locus-tag class description AL541_RS00025 PF00455 DeoR C terminal sensor domain AL541_RS00025 PF08220 DeoR-like helix-turn-helix domain AL541_RS00030 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL541_RS00035 PF06005 Cell division protein ZapB AL541_RS00040 PF03737 Aldolase/RraA AL541_RS00045 PF01040 UbiA prenyltransferase family AL541_RS00050 PF07724 AAA domain (Cdc48 subfamily) AL541_RS00050 PF00004 ATPase family associated with various cellular activities (AAA) AL541_RS00055 PF00227 Proteasome subunit AL541_RS00065 PF00356 Bacterial regulatory proteins, lacI family AL541_RS00070 PF00270 DEAD/DEAH box helicase AL541_RS00070 PF00271 Helicase conserved C-terminal domain AL541_RS00070 PF17764 3′ DNA-binding domain (3′BD) AL541_RS00070 PF18074 Primosomal protein N C-terminal domain AL541_RS00070 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL541_RS00080 PF01197 Ribosomal protein L31 AL541_RS00085 PF00338 Ribosomal protein S10p/S20e AL541_RS00090 PF00297 Ribosomal protein L3 AL541_RS00095 PF00573 Ribosomal protein L4/L1 family AL541_RS00100 PF00276 Ribosomal protein L23 AL541_RS00105 PF03947 Ribosomal Proteins L2, C-terminal domain AL541_RS00105 PF00181 Ribosomal Proteins L2, RNA binding domain AL541_RS00110 PF00203 Ribosomal protein S19 AL541_RS00115 PF00237 Ribosomal protein L22p/L17e AL541_RS00120 PF00189 Ribosomal protein S3, C-terminal domain AL541_RS00120 PF07650 KH domain AL541_RS00125 PF00252 Ribosomal protein L16p/L10e AL541_RS00130 PF00831 Ribosomal L29 protein AL541_RS00135 PF00366 Ribosomal protein S17 AL541_RS00140 PF00238 Ribosomal protein L14p/L23e AL541_RS00145 PF00467 KOW motif AL541_RS00145 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL541_RS00150 PF00673 ribosomal L5P family C-terminus AL541_RS00150 PF00281 Ribosomal protein L5 AL541_RS00155 PF00253 Ribosomal protein S14p/S29e AL541_RS00160 PF00410 Ribosomal protein S8 AL541_RS00165 PF00347 Ribosomal protein L6 AL541_RS00170 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL541_RS00175 PF00333 Ribosomal protein S5, N-terminal domain AL541_RS00175 PF03719 Ribosomal protein S5, C-terminal domain AL541_RS00180 PF00327 Ribosomal protein L30p/L7e AL541_RS00185 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AL541_RS00190 PF00344 SecY translocase AL541_RS00195 PF00444 Ribosomal protein L36 AL541_RS00200 PF00416 Ribosomal protein S13/S18 AL541_RS00205 PF00411 Ribosomal protein S11 AL541_RS00210 PF01479 S4 domain AL541_RS00210 PF00163 Ribosomal protein S4/S9 N-terminal domain AL541_RS00215 PF01000 RNA polymerase Rpb3/RpoA insert domain AL541_RS00215 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL541_RS00215 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL541_RS00220 PF01196 Ribosomal protein L17 AL541_RS00230 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL541_RS00230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL541_RS00240 PF13673 Acetyltransferase (GNAT) domain AL541_RS00245 PF00271 Helicase conserved C-terminal domain AL541_RS00245 PF00270 DEAD/DEAH box helicase AL541_RS00245 PF03880 DbpA RNA binding domain AL541_RS00255 PF00149 Calcineurin-like phosphoesterase AL541_RS00255 PF02872 5'-nucleotidase, C-terminal domain AL541_RS00260 PF14824 Sirohaem biosynthesis protein central AL541_RS00260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL541_RS00260 PF10414 Sirohaem synthase dimerisation region AL541_RS00265 PF01507 Phosphoadenosine phosphosulfate reductase family AL541_RS00270 PF00009 Elongation factor Tu GTP binding domain AL541_RS00275 PF02080 TrkA-C domain AL541_RS00275 PF03600 Citrate transporter AL541_RS00300 PF00005 ABC transporter AL541_RS00310 PF10795 Protein of unknown function (DUF2607) AL541_RS00315 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL541_RS00320 PF06526 Protein of unknown function (DUF1107) AL541_RS00325 PF01625 Peptide methionine sulfoxide reductase AL541_RS00330 PF17243 POTRA domain TamA domain 1 AL541_RS00330 PF07244 Surface antigen variable number repeat AL541_RS00330 PF01103 Surface antigen AL541_RS00335 PF04357 TamB, inner membrane protein subunit of TAM complex AL541_RS00340 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL541_RS00350 PF00719 Inorganic pyrophosphatase AL541_RS00355 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL541_RS00365 PF08245 Mur ligase middle domain AL541_RS00365 PF01225 Mur ligase family, catalytic domain AL541_RS00365 PF02875 Mur ligase family, glutamate ligase domain AL541_RS00370 PF02441 Flavoprotein AL541_RS00380 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS00385 PF00005 ABC transporter AL541_RS00390 PF03466 LysR substrate binding domain AL541_RS00390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS00395 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL541_RS00415 PF16868 NMT1-like family AL541_RS00425 PF02863 Arginine repressor, C-terminal domain AL541_RS00425 PF01316 Arginine repressor, DNA binding domain AL541_RS00430 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL541_RS00430 PF00056 lactate/malate dehydrogenase, NAD binding domain AL541_RS00440 PF00348 Polyprenyl synthetase AL541_RS00445 PF00829 Ribosomal prokaryotic L21 protein AL541_RS00450 PF01016 Ribosomal L27 protein AL541_RS00455 PF01926 50S ribosome-binding GTPase AL541_RS00455 PF01018 GTP1/OBG AL541_RS00460 PF06738 Putative threonine/serine exporter AL541_RS00465 PF12821 Threonine/Serine exporter, ThrE AL541_RS00470 PF00186 Dihydrofolate reductase AL541_RS00475 PF00149 Calcineurin-like phosphoesterase AL541_RS00480 PF04379 ApaG domain AL541_RS00485 PF00398 Ribosomal RNA adenine dimethylase AL541_RS00490 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL541_RS00495 PF09312 SurA N-terminal domain AL541_RS00500 PF04453 LPS transport system D AL541_RS00500 PF03968 OstA-like protein AL541_RS00505 PF00226 DnaJ domain AL541_RS00505 PF05099 Tellurite resistance protein TerB AL541_RS00515 PF00694 Aconitase C-terminal domain AL541_RS00520 PF00330 Aconitase family (aconitate hydratase) AL541_RS00525 PF00180 Isocitrate/isopropylmalate dehydrogenase AL541_RS00530 PF08502 LeuA allosteric (dimerisation) domain AL541_RS00530 PF00682 HMGL-like AL541_RS00545 PF01569 PAP2 superfamily AL541_RS00555 PF03466 LysR substrate binding domain AL541_RS00555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS00560 PF00501 AMP-binding enzyme AL541_RS00565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL541_RS00565 PF00205 Thiamine pyrophosphate enzyme, central domain AL541_RS00565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL541_RS00570 PF10369 Small subunit of acetolactate synthase AL541_RS00575 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS00585 PF00224 Pyruvate kinase, barrel domain AL541_RS00585 PF02887 Pyruvate kinase, alpha/beta domain AL541_RS00590 PF00455 DeoR C terminal sensor domain AL541_RS00590 PF08220 DeoR-like helix-turn-helix domain AL541_RS00595 PF01380 SIS domain AL541_RS00600 PF00465 Iron-containing alcohol dehydrogenase AL541_RS00605 PF02733 Dak1 domain AL541_RS00610 PF02734 DAK2 domain AL541_RS00615 PF00391 PEP-utilising enzyme, mobile domain AL541_RS00615 PF02896 PEP-utilising enzyme, TIM barrel domain AL541_RS00615 PF05524 PEP-utilising enzyme, N-terminal AL541_RS00620 PF02954 Bacterial regulatory protein, Fis family AL541_RS00620 PF00158 Sigma-54 interaction domain AL541_RS00620 PF00989 PAS fold AL541_RS00625 PF05068 Mannitol repressor AL541_RS00630 PF01232 Mannitol dehydrogenase Rossmann domain AL541_RS00630 PF08125 Mannitol dehydrogenase C-terminal domain AL541_RS00635 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL541_RS00635 PF02378 Phosphotransferase system, EIIC AL541_RS00635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL541_RS00655 PF03180 NLPA lipoprotein AL541_RS00710 PF13657 HipA N-terminal domain AL541_RS00710 PF07804 HipA-like C-terminal domain AL541_RS00735 PF11638 DnaA N-terminal domain AL541_RS00735 PF08299 Bacterial dnaA protein helix-turn-helix AL541_RS00735 PF00308 Bacterial dnaA protein AL541_RS00745 PF13657 HipA N-terminal domain AL541_RS00745 PF07804 HipA-like C-terminal domain AL541_RS00760 PF04539 Sigma-70 region 3 AL541_RS00760 PF04546 Sigma-70, non-essential region AL541_RS00760 PF00140 Sigma-70 factor, region 1.2 AL541_RS00760 PF04542 Sigma-70 region 2 AL541_RS00760 PF03979 Sigma-70 factor, region 1.1 AL541_RS00760 PF04545 Sigma-70, region 4 AL541_RS00765 PF10410 DnaB-helicase binding domain of primase AL541_RS00765 PF08278 DNA primase DnaG DnaB-binding AL541_RS00765 PF08275 DNA primase catalytic core, N-terminal domain AL541_RS00765 PF01807 CHC2 zinc finger AL541_RS00770 PF09424 Yqey-like protein AL541_RS00775 PF01165 Ribosomal protein S21 AL541_RS00780 PF00814 Glycoprotease family AL541_RS00785 PF00561 alpha/beta hydrolase fold AL541_RS00790 PF02660 Glycerol-3-phosphate acyltransferase AL541_RS00795 PF02152 Dihydroneopterin aldolase AL541_RS00800 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL541_RS00805 PF02673 Bacitracin resistance protein BacA AL541_RS00810 PF01743 Poly A polymerase head domain AL541_RS00810 PF01966 HD domain AL541_RS00810 PF12627 Probable RNA and SrmB- binding site of polymerase A AL541_RS00815 PF01471 Putative peptidoglycan binding domain AL541_RS00815 PF13401 AAA domain AL541_RS00830 PF08239 Bacterial SH3 domain AL541_RS00835 PF01384 Phosphate transporter family AL541_RS00840 PF01865 Protein of unknown function DUF47 AL541_RS00845 PF01928 CYTH domain AL541_RS00855 PF02743 Cache domain AL541_RS00855 PF00672 HAMP domain AL541_RS00855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS00860 PF08335 GlnD PII-uridylyltransferase AL541_RS00860 PF03710 Glutamate-ammonia ligase adenylyltransferase AL541_RS00865 PF01467 Cytidylyltransferase-like AL541_RS00865 PF00294 pfkB family carbohydrate kinase AL541_RS00870 PF02321 Outer membrane efflux protein AL541_RS00875 PF00293 NUDIX domain AL541_RS00880 PF06853 Protein of unknown function (DUF1249) AL541_RS00885 PF00149 Calcineurin-like phosphoesterase AL541_RS00890 PF05728 Uncharacterised protein family (UPF0227) AL541_RS00895 PF00986 DNA gyrase B subunit, carboxyl terminus AL541_RS00895 PF01751 Toprim domain AL541_RS00895 PF00204 DNA gyrase B AL541_RS00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS00900 PF00521 DNA gyrase/topoisomerase IV, subunit A AL541_RS00900 PF03989 DNA gyrase C-terminal domain, beta-propeller AL541_RS00905 PF13180 PDZ domain AL541_RS00910 PF00595 PDZ domain AL541_RS00915 PF06295 Protein of unknown function (DUF1043) AL541_RS00925 PF03969 AFG1-like ATPase AL541_RS00935 PF00572 Ribosomal protein L13 AL541_RS00940 PF00380 Ribosomal protein S9/S16 AL541_RS00945 PF00355 Rieske [2Fe-2S] domain AL541_RS00945 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL541_RS00950 PF00032 Cytochrome b(C-terminal)/b6/petD AL541_RS00950 PF00033 Cytochrome b/b6/petB AL541_RS00955 PF02167 Cytochrome C1 family AL541_RS00960 PF00043 Glutathione S-transferase, C-terminal domain AL541_RS00960 PF02798 Glutathione S-transferase, N-terminal domain AL541_RS00965 PF04386 Stringent starvation protein B AL541_RS00970 PF04972 BON domain AL541_RS00975 PF13580 SIS domain AL541_RS00980 PF02021 Uncharacterised protein family UPF0102 AL541_RS00985 PF04348 LppC putative lipoprotein AL541_RS00990 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL541_RS01005 PF01795 MraW methylase family AL541_RS01010 PF04999 Cell division protein FtsL AL541_RS01015 PF00905 Penicillin binding protein transpeptidase domain AL541_RS01015 PF03717 Penicillin-binding Protein dimerisation domain AL541_RS01020 PF01225 Mur ligase family, catalytic domain AL541_RS01020 PF08245 Mur ligase middle domain AL541_RS01020 PF02875 Mur ligase family, glutamate ligase domain AL541_RS01025 PF01225 Mur ligase family, catalytic domain AL541_RS01025 PF02875 Mur ligase family, glutamate ligase domain AL541_RS01025 PF08245 Mur ligase middle domain AL541_RS01030 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL541_RS01030 PF00953 Glycosyl transferase family 4 AL541_RS01035 PF02875 Mur ligase family, glutamate ligase domain AL541_RS01035 PF08245 Mur ligase middle domain AL541_RS01040 PF01098 Cell cycle protein AL541_RS01045 PF03033 Glycosyltransferase family 28 N-terminal domain AL541_RS01045 PF04101 Glycosyltransferase family 28 C-terminal domain AL541_RS01050 PF08245 Mur ligase middle domain AL541_RS01050 PF02875 Mur ligase family, glutamate ligase domain AL541_RS01050 PF01225 Mur ligase family, catalytic domain AL541_RS01055 PF08478 POTRA domain, FtsQ-type AL541_RS01055 PF03799 Cell division protein FtsQ AL541_RS01060 PF02491 SHS2 domain inserted in FTSA AL541_RS01065 PF12327 FtsZ family, C-terminal domain AL541_RS01065 PF00091 Tubulin/FtsZ family, GTPase domain AL541_RS01070 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL541_RS01080 PF02810 SEC-C motif AL541_RS01080 PF07517 SecA DEAD-like domain AL541_RS01080 PF01043 SecA preprotein cross-linking domain AL541_RS01080 PF07516 SecA Wing and Scaffold domain AL541_RS01085 PF00293 NUDIX domain AL541_RS01090 PF05173 Dihydrodipicolinate reductase, C-terminus AL541_RS01090 PF01113 Dihydrodipicolinate reductase, N-terminus AL541_RS01095 PF00117 Glutamine amidotransferase class-I AL541_RS01095 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL541_RS01100 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL541_RS01100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL541_RS01100 PF02142 MGS-like domain AL541_RS01115 PF01925 Sulfite exporter TauE/SafE AL541_RS01120 PF03466 LysR substrate binding domain AL541_RS01120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS01125 PF03458 UPF0126 domain AL541_RS01130 PF01497 Periplasmic binding protein AL541_RS01135 PF03186 CobD/Cbib protein AL541_RS01135 PF17113 Regulatory signalling modulator protein AmpE AL541_RS01140 PF01048 Phosphorylase superfamily AL541_RS01150 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS01150 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL541_RS01155 PF00310 Glutamine amidotransferases class-II AL541_RS01155 PF04898 Glutamate synthase central domain AL541_RS01155 PF01645 Conserved region in glutamate synthase AL541_RS01155 PF01493 GXGXG motif AL541_RS01160 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL541_RS01160 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS01165 PF01493 GXGXG motif AL541_RS01165 PF04898 Glutamate synthase central domain AL541_RS01165 PF00310 Glutamine amidotransferases class-II AL541_RS01165 PF01645 Conserved region in glutamate synthase AL541_RS01170 PF16199 Radical_SAM C-terminal domain AL541_RS01170 PF04055 Radical SAM superfamily AL541_RS01175 PF00563 EAL domain AL541_RS01175 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS01175 PF01590 GAF domain AL541_RS01175 PF00360 Phytochrome region AL541_RS01180 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS01180 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL541_RS01180 PF01627 Hpt domain AL541_RS01180 PF00989 PAS fold AL541_RS01180 PF00072 Response regulator receiver domain AL541_RS01180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS01190 PF00072 Response regulator receiver domain AL541_RS01190 PF00486 Transcriptional regulatory protein, C terminal AL541_RS01205 PF03737 Aldolase/RraA AL541_RS01220 PF03447 Homoserine dehydrogenase, NAD binding domain AL541_RS01220 PF00696 Amino acid kinase family AL541_RS01220 PF01842 ACT domain AL541_RS01220 PF13840 ACT domain AL541_RS01220 PF00742 Homoserine dehydrogenase AL541_RS01225 PF00288 GHMP kinases N terminal domain AL541_RS01225 PF08544 GHMP kinases C terminal AL541_RS01230 PF00291 Pyridoxal-phosphate dependent enzyme AL541_RS01230 PF14821 Threonine synthase N terminus AL541_RS01240 PF01228 Glycine radical AL541_RS01245 PF01261 Xylose isomerase-like TIM barrel AL541_RS01255 PF03167 Uracil DNA glycosylase superfamily AL541_RS01270 PF01235 Sodium:alanine symporter family AL541_RS01275 PF03883 Peroxide stress protein YaaA AL541_RS01280 PF00270 DEAD/DEAH box helicase AL541_RS01280 PF00271 Helicase conserved C-terminal domain AL541_RS01285 PF05175 Methyltransferase small domain AL541_RS01290 PF05525 Branched-chain amino acid transport protein AL541_RS01295 PF00258 Flavodoxin AL541_RS01300 PF02899 Phage integrase, N-terminal SAM-like domain AL541_RS01300 PF00589 Phage integrase family AL541_RS01305 PF13098 Thioredoxin-like domain AL541_RS01305 PF10411 Disulfide bond isomerase protein N-terminus AL541_RS01310 PF01368 DHH family AL541_RS01310 PF02272 DHHA1 domain AL541_RS01310 PF17768 RecJ OB domain AL541_RS01320 PF00152 tRNA synthetases class II (D, K and N) AL541_RS01320 PF01336 OB-fold nucleic acid binding domain AL541_RS01325 PF00072 Response regulator receiver domain AL541_RS01325 PF02954 Bacterial regulatory protein, Fis family AL541_RS01325 PF00158 Sigma-54 interaction domain AL541_RS01335 PF00248 Aldo/keto reductase family AL541_RS01345 PF02976 DNA mismatch repair enzyme MutH AL541_RS01350 PF00293 NUDIX domain AL541_RS01355 PF01590 GAF domain AL541_RS01355 PF05524 PEP-utilising enzyme, N-terminal AL541_RS01355 PF00391 PEP-utilising enzyme, mobile domain AL541_RS01355 PF02896 PEP-utilising enzyme, TIM barrel domain AL541_RS01360 PF01925 Sulfite exporter TauE/SafE AL541_RS01365 PF01790 Prolipoprotein diacylglyceryl transferase AL541_RS01370 PF00303 Thymidylate synthase AL541_RS01380 PF02690 Na+/Pi-cotransporter AL541_RS01385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS01385 PF03466 LysR substrate binding domain AL541_RS01390 PF01022 Bacterial regulatory protein, arsR family AL541_RS01395 PF01649 Ribosomal protein S20 AL541_RS01400 PF03023 Lipid II flippase MurJ AL541_RS01405 PF06574 FAD synthetase AL541_RS01405 PF01687 Riboflavin kinase AL541_RS01410 PF00133 tRNA synthetases class I (I, L, M and V) AL541_RS01410 PF06827 Zinc finger found in FPG and IleRS AL541_RS01410 PF08264 Anticodon-binding domain of tRNA AL541_RS01415 PF01252 Signal peptidase (SPase) II AL541_RS01420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL541_RS01425 PF02401 LytB protein AL541_RS01435 PF04397 LytTr DNA-binding domain AL541_RS01435 PF00072 Response regulator receiver domain AL541_RS01440 PF06580 Histidine kinase AL541_RS01440 PF07694 5TMR of 5TMR-LYT AL541_RS01445 PF02554 Carbon starvation protein CstA AL541_RS01460 PF01380 SIS domain AL541_RS01465 PF03702 Anhydro-N-acetylmuramic acid kinase AL541_RS01470 PF00933 Glycosyl hydrolase family 3 N terminal domain AL541_RS01475 PF00793 DAHP synthetase I family AL541_RS01480 PF01817 Chorismate mutase type II AL541_RS01480 PF02153 Prephenate dehydrogenase AL541_RS01485 PF01551 Peptidase family M23 AL541_RS01485 PF04225 Opacity-associated protein A LysM-like domain AL541_RS01490 PF07238 PilZ domain AL541_RS01495 PF12848 ABC transporter AL541_RS01495 PF00005 ABC transporter AL541_RS01500 PF14718 Soluble lytic murein transglycosylase L domain AL541_RS01500 PF01464 Transglycosylase SLT domain AL541_RS01505 PF01371 Trp repressor protein AL541_RS01510 PF01931 Protein of unknown function DUF84 AL541_RS01515 PF00800 Prephenate dehydratase AL541_RS01515 PF01817 Chorismate mutase type II AL541_RS01520 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL541_RS01525 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_RS01525 PF01464 Transglycosylase SLT domain AL541_RS01530 PF13525 Outer membrane lipoprotein AL541_RS01535 PF00849 RNA pseudouridylate synthase AL541_RS01535 PF01479 S4 domain AL541_RS01540 PF02578 Multi-copper polyphenol oxidoreductase laccase AL541_RS01545 PF00004 ATPase family associated with various cellular activities (AAA) AL541_RS01545 PF07724 AAA domain (Cdc48 subfamily) AL541_RS01545 PF17871 AAA lid domain AL541_RS01545 PF02861 Clp amino terminal domain, pathogenicity island component AL541_RS01545 PF10431 C-terminal, D2-small domain, of ClpB protein AL541_RS01595 PF03411 Penicillin-insensitive murein endopeptidase AL541_RS01610 PF00037 4Fe-4S binding domain AL541_RS01615 PF16325 Peptidase family U32 C-terminal domain AL541_RS01615 PF01136 Peptidase family U32 AL541_RS01620 PF04381 Putative exonuclease, RdgC AL541_RS01630 PF00486 Transcriptional regulatory protein, C terminal AL541_RS01630 PF00072 Response regulator receiver domain AL541_RS01635 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS01635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS01635 PF11808 Phosphate regulon sensor protein PhoR AL541_RS01635 PF00989 PAS fold AL541_RS01640 PF12849 PBP superfamily domain AL541_RS01645 PF02541 Ppx/GppA phosphatase family AL541_RS01650 PF02503 Polyphosphate kinase middle domain AL541_RS01650 PF13089 Polyphosphate kinase N-terminal domain AL541_RS01650 PF17941 Polyphosphate kinase C-terminal domain 1 AL541_RS01650 PF13090 Polyphosphate kinase C-terminal domain 2 AL541_RS01655 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS01660 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS01665 PF00005 ABC transporter AL541_RS01670 PF01895 PhoU domain AL541_RS01675 PF03976 Polyphosphate kinase 2 (PPK2) AL541_RS01680 PF03932 CutC family AL541_RS01685 PF00578 AhpC/TSA family AL541_RS01685 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL541_RS01690 PF03466 LysR substrate binding domain AL541_RS01690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS01695 PF01274 Malate synthase AL541_RS01700 PF00463 Isocitrate lyase family AL541_RS01705 PF00571 CBS domain AL541_RS01715 PF02547 Queuosine biosynthesis protein AL541_RS01720 PF01702 Queuine tRNA-ribosyltransferase AL541_RS01725 PF02699 Preprotein translocase subunit AL541_RS01730 PF07549 SecD/SecF GG Motif AL541_RS01730 PF13721 SecD export protein N-terminal TM region AL541_RS01730 PF02355 Protein export membrane protein AL541_RS01735 PF07549 SecD/SecF GG Motif AL541_RS01735 PF02355 Protein export membrane protein AL541_RS01750 PF00459 Inositol monophosphatase family AL541_RS01755 PF00588 SpoU rRNA Methylase family AL541_RS01760 PF02082 Transcriptional regulator AL541_RS01765 PF00266 Aminotransferase class-V AL541_RS01770 PF01592 NifU-like N terminal domain AL541_RS01775 PF01521 Iron-sulphur cluster biosynthesis AL541_RS01780 PF07743 HSCB C-terminal oligomerisation domain AL541_RS01780 PF00226 DnaJ domain AL541_RS01785 PF00012 Hsp70 protein AL541_RS01790 PF00111 2Fe-2S iron-sulfur cluster binding domain AL541_RS01795 PF04384 Iron-sulphur cluster assembly AL541_RS01800 PF00883 Cytosol aminopeptidase family, catalytic domain AL541_RS01800 PF12404 Peptidase AL541_RS01805 PF00334 Nucleoside diphosphate kinase AL541_RS01810 PF04055 Radical SAM superfamily AL541_RS01815 PF13464 Domain of unknown function (DUF4115) AL541_RS01820 PF04551 GcpE protein AL541_RS01825 PF03129 Anticodon binding domain AL541_RS01825 PF13393 Histidyl-tRNA synthetase AL541_RS01830 PF09976 Tetratricopeptide repeat-like domain AL541_RS01835 PF13360 PQQ-like domain AL541_RS01840 PF01926 50S ribosome-binding GTPase AL541_RS01840 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL541_RS01855 PF02601 Exonuclease VII, large subunit AL541_RS01855 PF13742 OB-fold nucleic acid binding domain AL541_RS01860 PF00478 IMP dehydrogenase / GMP reductase domain AL541_RS01860 PF00571 CBS domain AL541_RS01865 PF02540 NAD synthase AL541_RS01865 PF00117 Glutamine amidotransferase class-I AL541_RS01865 PF00958 GMP synthase C terminal domain AL541_RS01870 PF03553 Na+/H+ antiporter family AL541_RS01875 PF06483 Chitinase C AL541_RS01875 PF00704 Glycosyl hydrolases family 18 AL541_RS01880 PF01184 GPR1/FUN34/yaaH family AL541_RS01885 PF01235 Sodium:alanine symporter family AL541_RS01890 PF01266 FAD dependent oxidoreductase AL541_RS01900 PF01053 Cys/Met metabolism PLP-dependent enzyme AL541_RS01905 PF00202 Aminotransferase class-III AL541_RS01925 PF00583 Acetyltransferase (GNAT) family AL541_RS01925 PF00795 Carbon-nitrogen hydrolase AL541_RS01930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS01930 PF03466 LysR substrate binding domain AL541_RS01955 PF01668 SmpB protein AL541_RS01960 PF03364 Polyketide cyclase / dehydrase and lipid transport AL541_RS01965 PF03658 RnfH family Ubiquitin AL541_RS01970 PF04355 SmpA / OmlA family AL541_RS01980 PF02463 RecF/RecN/SMC N terminal domain AL541_RS01990 PF01513 ATP-NAD kinase AL541_RS01995 PF01025 GrpE AL541_RS02000 PF00375 Sodium:dicarboxylate symporter family AL541_RS02005 PF00012 Hsp70 protein AL541_RS02010 PF00684 DnaJ central domain AL541_RS02010 PF00226 DnaJ domain AL541_RS02010 PF01556 DnaJ C terminal domain AL541_RS02020 PF07963 Prokaryotic N-terminal methylation motif AL541_RS02020 PF00114 Pilin (bacterial filament) AL541_RS02040 PF03806 AbgT putative transporter family AL541_RS02045 PF14437 MafB19-like deaminase AL541_RS02055 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_RS02055 PF01464 Transglycosylase SLT domain AL541_RS02060 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL541_RS02060 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL541_RS02060 PF02769 AIR synthase related protein, C-terminal domain AL541_RS02075 PF00593 TonB dependent receptor AL541_RS02075 PF07715 TonB-dependent Receptor Plug Domain AL541_RS02090 PF07687 Peptidase dimerisation domain AL541_RS02090 PF01546 Peptidase family M20/M25/M40 AL541_RS02095 PF00860 Permease family AL541_RS02100 PF00156 Phosphoribosyl transferase domain AL541_RS02105 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) AL541_RS02110 PF07417 Sigma factor-binding transcriptional regulator Crl AL541_RS02115 PF01472 PUA domain AL541_RS02115 PF00696 Amino acid kinase family AL541_RS02120 PF00171 Aldehyde dehydrogenase family AL541_RS02125 PF03477 ATP cone domain AL541_RS02130 PF01872 RibD C-terminal domain AL541_RS02130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL541_RS02135 PF00677 Lumazine binding domain AL541_RS02140 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL541_RS02140 PF00925 GTP cyclohydrolase II AL541_RS02145 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL541_RS02150 PF01029 NusB family AL541_RS02155 PF00586 AIR synthase related protein, N-terminal domain AL541_RS02155 PF02769 AIR synthase related protein, C-terminal domain AL541_RS02160 PF04608 Phosphatidylglycerophosphatase A AL541_RS02165 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL541_RS02165 PF02780 Transketolase, C-terminal domain AL541_RS02165 PF02779 Transketolase, pyrimidine binding domain AL541_RS02170 PF00348 Polyprenyl synthetase AL541_RS02175 PF02609 Exonuclease VII small subunit AL541_RS02180 PF01618 MotA/TolQ/ExbB proton channel family AL541_RS02185 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL541_RS02185 PF00691 OmpA family AL541_RS02190 PF02926 THUMP domain AL541_RS02190 PF02568 Thiamine biosynthesis protein (ThiI) AL541_RS02195 PF03466 LysR substrate binding domain AL541_RS02195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS02205 PF04241 Protein of unknown function (DUF423) AL541_RS02210 PF18125 RlmM ferredoxin-like domain AL541_RS02210 PF01728 FtsJ-like methyltransferase AL541_RS02215 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL541_RS02215 PF01367 5'-3' exonuclease, C-terminal SAM fold AL541_RS02220 PF11892 Domain of unknown function (DUF3412) AL541_RS02220 PF03641 Possible lysine decarboxylase AL541_RS02220 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL541_RS02225 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS02235 PF14489 QueF-like protein AL541_RS02235 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL541_RS02240 PF07348 Syd protein (SUKH-2) AL541_RS02245 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL541_RS02250 PF03180 NLPA lipoprotein AL541_RS02255 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS02260 PF09383 NIL domain AL541_RS02260 PF00005 ABC transporter AL541_RS02270 PF00356 Bacterial regulatory proteins, lacI family AL541_RS02275 PF00367 phosphotransferase system, EIIB AL541_RS02275 PF02378 Phosphotransferase system, EIIC AL541_RS02280 PF16657 Maltogenic Amylase, C-terminal domain AL541_RS02280 PF00128 Alpha amylase, catalytic domain AL541_RS02295 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL541_RS02295 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AL541_RS02300 PF00464 Serine hydroxymethyltransferase AL541_RS02305 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL541_RS02305 PF04055 Radical SAM superfamily AL541_RS02310 PF03099 Biotin/lipoate A/B protein ligase family AL541_RS02315 PF04359 Protein of unknown function (DUF493) AL541_RS02320 PF00768 D-alanyl-D-alanine carboxypeptidase AL541_RS02320 PF07943 Penicillin-binding protein 5, C-terminal domain AL541_RS02325 PF05036 Sporulation related domain AL541_RS02325 PF03330 Lytic transglycolase AL541_RS02330 PF01098 Cell cycle protein AL541_RS02335 PF03717 Penicillin-binding Protein dimerisation domain AL541_RS02335 PF00905 Penicillin binding protein transpeptidase domain AL541_RS02340 PF02590 Predicted SPOUT methyltransferase AL541_RS02350 PF06144 DNA polymerase III, delta subunit AL541_RS02350 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AL541_RS02355 PF04390 Lipopolysaccharide-assembly AL541_RS02360 PF00133 tRNA synthetases class I (I, L, M and V) AL541_RS02360 PF08264 Anticodon-binding domain of tRNA AL541_RS02360 PF13603 Leucyl-tRNA synthetase, Domain 2 AL541_RS02365 PF07295 Zinc-ribbon containing domain AL541_RS02370 PF00795 Carbon-nitrogen hydrolase AL541_RS02375 PF00571 CBS domain AL541_RS02375 PF03471 Transporter associated domain AL541_RS02380 PF02130 Uncharacterized protein family UPF0054 AL541_RS02385 PF02562 PhoH-like protein AL541_RS02390 PF04055 Radical SAM superfamily AL541_RS02390 PF00919 Uncharacterized protein family UPF0004 AL541_RS02390 PF01938 TRAM domain AL541_RS02400 PF01494 FAD binding domain AL541_RS02510 PF01926 50S ribosome-binding GTPase AL541_RS02510 PF06071 Protein of unknown function (DUF933) AL541_RS02515 PF01195 Peptidyl-tRNA hydrolase AL541_RS02520 PF14572 Phosphoribosyl synthetase-associated domain AL541_RS02520 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL541_RS02525 PF08544 GHMP kinases C terminal AL541_RS02525 PF00288 GHMP kinases N terminal domain AL541_RS02530 PF03550 Outer membrane lipoprotein LolB AL541_RS02535 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL541_RS02535 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL541_RS02535 PF01488 Shikimate / quinate 5-dehydrogenase AL541_RS02540 PF03462 PCRF domain AL541_RS02540 PF00472 RF-1 domain AL541_RS02545 PF13847 Methyltransferase domain AL541_RS02545 PF17827 PrmC N-terminal domain AL541_RS02550 PF04247 Invasion gene expression up-regulator, SirB AL541_RS02555 PF13369 Transglutaminase-like superfamily AL541_RS02560 PF00793 DAHP synthetase I family AL541_RS02565 PF00149 Calcineurin-like phosphoesterase AL541_RS02565 PF02872 5'-nucleotidase, C-terminal domain AL541_RS02570 PF04073 Aminoacyl-tRNA editing domain AL541_RS02575 PF00849 RNA pseudouridylate synthase AL541_RS02575 PF01479 S4 domain AL541_RS02580 PF01713 Smr domain AL541_RS02605 PF00728 Glycosyl hydrolase family 20, catalytic domain AL541_RS02605 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL541_RS02605 PF03173 Putative carbohydrate binding domain AL541_RS02605 PF02838 Glycosyl hydrolase family 20, domain 2 AL541_RS02620 PF00403 Heavy-metal-associated domain AL541_RS02630 PF13609 Gram-negative porin AL541_RS02635 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL541_RS02640 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL541_RS02645 PF00691 OmpA family AL541_RS02645 PF01389 OmpA-like transmembrane domain AL541_RS02690 PF00072 Response regulator receiver domain AL541_RS02690 PF01584 CheW-like domain AL541_RS02695 PF03705 CheR methyltransferase, all-alpha domain AL541_RS02695 PF01739 CheR methyltransferase, SAM binding domain AL541_RS02700 PF00460 Flagella basal body rod protein AL541_RS02705 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_RS02705 PF00460 Flagella basal body rod protein AL541_RS02710 PF13861 FlgD Tudor-like domain AL541_RS02710 PF13860 FlgD Ig-like domain AL541_RS02710 PF03963 Flagellar hook capping protein - N-terminal region AL541_RS02715 PF00460 Flagella basal body rod protein AL541_RS02715 PF07559 Flagellar basal body protein FlaE AL541_RS02715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_RS02720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_RS02720 PF00460 Flagella basal body rod protein AL541_RS02725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_RS02725 PF00460 Flagella basal body rod protein AL541_RS02730 PF02107 Flagellar L-ring protein AL541_RS02735 PF02119 Flagellar P-ring protein AL541_RS02740 PF10135 Rod binding protein AL541_RS02740 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL541_RS02745 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_RS02745 PF07196 Flagellin hook IN motif AL541_RS02750 PF00669 Bacterial flagellin N-terminal helical region AL541_RS02755 PF00700 Bacterial flagellin C-terminal helical region AL541_RS02755 PF00669 Bacterial flagellin N-terminal helical region AL541_RS02755 PF07196 Flagellin hook IN motif AL541_RS02765 PF00700 Bacterial flagellin C-terminal helical region AL541_RS02765 PF07196 Flagellin hook IN motif AL541_RS02765 PF00669 Bacterial flagellin N-terminal helical region AL541_RS02780 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL541_RS02785 PF02896 PEP-utilising enzyme, TIM barrel domain AL541_RS02785 PF00391 PEP-utilising enzyme, mobile domain AL541_RS02785 PF05524 PEP-utilising enzyme, N-terminal AL541_RS02790 PF00381 PTS HPr component phosphorylation site AL541_RS02800 PF00291 Pyridoxal-phosphate dependent enzyme AL541_RS02810 PF04354 ZipA, C-terminal FtsZ-binding domain AL541_RS02815 PF12826 Helix-hairpin-helix motif AL541_RS02815 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL541_RS02815 PF03120 NAD-dependent DNA ligase OB-fold domain AL541_RS02815 PF01653 NAD-dependent DNA ligase adenylation domain AL541_RS02815 PF00533 BRCA1 C Terminus (BRCT) domain AL541_RS02820 PF03573 outer membrane porin, OprD family AL541_RS02840 PF01145 SPFH domain / Band 7 family AL541_RS02840 PF16200 C-terminal region of band_7 AL541_RS02845 PF00085 Thioredoxin AL541_RS02855 PF00106 short chain dehydrogenase AL541_RS02860 PF01370 NAD dependent epimerase/dehydratase family AL541_RS02860 PF08338 Domain of unknown function (DUF1731) AL541_RS02865 PF07556 Protein of unknown function (DUF1538) AL541_RS02870 PF07556 Protein of unknown function (DUF1538) AL541_RS02890 PF12850 Calcineurin-like phosphoesterase superfamily domain AL541_RS02905 PF17323 Trans-membrane regulatory protein ToxS AL541_RS02910 PF00486 Transcriptional regulatory protein, C terminal AL541_RS02915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS02915 PF00183 Hsp90 protein AL541_RS02920 PF05191 Adenylate kinase, active site lid AL541_RS02925 PF00762 Ferrochelatase AL541_RS02930 PF00854 POT family AL541_RS02935 PF02357 Transcription termination factor nusG AL541_RS02940 PF13537 Glutamine amidotransferase domain AL541_RS02940 PF00733 Asparagine synthase AL541_RS02945 PF00999 Sodium/hydrogen exchanger family AL541_RS02945 PF02254 TrkA-N domain AL541_RS02950 PF00480 ROK family AL541_RS02950 PF01047 MarR family AL541_RS02955 PF01979 Amidohydrolase family AL541_RS02965 PF02378 Phosphotransferase system, EIIC AL541_RS02965 PF00367 phosphotransferase system, EIIB AL541_RS02965 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL541_RS02970 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL541_RS02970 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL541_RS02975 PF01475 Ferric uptake regulator family AL541_RS02985 PF00258 Flavodoxin AL541_RS02995 PF12697 Alpha/beta hydrolase family AL541_RS03000 PF03925 SeqA protein C-terminal domain AL541_RS03000 PF17206 SeqA protein N-terminal domain AL541_RS03005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL541_RS03005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL541_RS03005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL541_RS03005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL541_RS03015 PF01784 NIF3 (NGG1p interacting factor 3) AL541_RS03020 PF00285 Citrate synthase, C-terminal domain AL541_RS03025 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL541_RS03030 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL541_RS03035 PF02910 Fumarate reductase flavoprotein C-term AL541_RS03035 PF00890 FAD binding domain AL541_RS03040 PF13085 2Fe-2S iron-sulfur cluster binding domain AL541_RS03045 PF02779 Transketolase, pyrimidine binding domain AL541_RS03045 PF16870 2-oxoglutarate dehydrogenase C-terminal AL541_RS03045 PF16078 2-oxoglutarate dehydrogenase N-terminus AL541_RS03045 PF00676 Dehydrogenase E1 component AL541_RS03050 PF00364 Biotin-requiring enzyme AL541_RS03050 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL541_RS03050 PF02817 e3 binding domain AL541_RS03055 PF00549 CoA-ligase AL541_RS03055 PF08442 ATP-grasp domain AL541_RS03060 PF00549 CoA-ligase AL541_RS03060 PF02629 CoA binding domain AL541_RS03065 PF00950 ABC 3 transport family AL541_RS03070 PF00005 ABC transporter AL541_RS03075 PF01297 Zinc-uptake complex component A periplasmic AL541_RS03080 PF02311 AraC-like ligand binding domain AL541_RS03080 PF12833 Helix-turn-helix domain AL541_RS03085 PF04023 FeoA domain AL541_RS03090 PF17910 FeoB cytosolic helical domain AL541_RS03090 PF02421 Ferrous iron transport protein B AL541_RS03090 PF07670 Nucleoside recognition AL541_RS03090 PF07664 Ferrous iron transport protein B C terminus AL541_RS03110 PF05746 DALR anticodon binding domain AL541_RS03110 PF00750 tRNA synthetases class I (R) AL541_RS03110 PF03485 Arginyl tRNA synthetase N terminal domain AL541_RS03120 PF06185 YecM protein AL541_RS03125 PF01842 ACT domain AL541_RS03125 PF00551 Formyl transferase AL541_RS03130 PF13307 Helicase C-terminal domain AL541_RS03130 PF04851 Type III restriction enzyme, res subunit AL541_RS03135 PF00814 Glycoprotease family AL541_RS03145 PF03843 Outer membrane lipoprotein Slp family AL541_RS03150 PF00561 alpha/beta hydrolase fold AL541_RS03155 PF00501 AMP-binding enzyme AL541_RS03155 PF13193 AMP-binding enzyme C-terminal domain AL541_RS03160 PF00570 HRDC domain AL541_RS03160 PF01612 3'-5' exonuclease AL541_RS03165 PF03776 Septum formation topological specificity factor MinE AL541_RS03170 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL541_RS03175 PF03775 Septum formation inhibitor MinC, C-terminal domain AL541_RS03175 PF05209 Septum formation inhibitor MinC, N-terminal domain AL541_RS03180 PF05166 YcgL domain AL541_RS03185 PF13406 Transglycosylase SLT domain AL541_RS03190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS03190 PF03466 LysR substrate binding domain AL541_RS03195 PF07662 Na+ dependent nucleoside transporter C-terminus AL541_RS03195 PF07670 Nucleoside recognition AL541_RS03195 PF01773 Na+ dependent nucleoside transporter N-terminus AL541_RS03200 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL541_RS03200 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL541_RS03210 PF02801 Beta-ketoacyl synthase, C-terminal domain AL541_RS03210 PF00109 Beta-ketoacyl synthase, N-terminal domain AL541_RS03220 PF07977 FabA-like domain AL541_RS03225 PF02801 Beta-ketoacyl synthase, C-terminal domain AL541_RS03225 PF00109 Beta-ketoacyl synthase, N-terminal domain AL541_RS03250 PF00221 Aromatic amino acid lyase AL541_RS03255 PF00535 Glycosyl transferase family 2 AL541_RS03260 PF07977 FabA-like domain AL541_RS03275 PF00550 Phosphopantetheine attachment site AL541_RS03280 PF00550 Phosphopantetheine attachment site AL541_RS03305 PF04820 Tryptophan halogenase AL541_RS03315 PF00270 DEAD/DEAH box helicase AL541_RS03315 PF00271 Helicase conserved C-terminal domain AL541_RS03320 PF02254 TrkA-N domain AL541_RS03320 PF02080 TrkA-C domain AL541_RS03325 PF02386 Cation transport protein AL541_RS03340 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL541_RS03345 PF03480 Bacterial extracellular solute-binding protein, family 7 AL541_RS03350 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL541_RS03355 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL541_RS03365 PF02954 Bacterial regulatory protein, Fis family AL541_RS03365 PF00158 Sigma-54 interaction domain AL541_RS03365 PF00072 Response regulator receiver domain AL541_RS03370 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS03370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS03370 PF02743 Cache domain AL541_RS03380 PF05698 Bacterial trigger factor protein (TF) C-terminus AL541_RS03380 PF05697 Bacterial trigger factor protein (TF) AL541_RS03380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL541_RS03385 PF00574 Clp protease AL541_RS03390 PF10431 C-terminal, D2-small domain, of ClpB protein AL541_RS03390 PF06689 ClpX C4-type zinc finger AL541_RS03390 PF07724 AAA domain (Cdc48 subfamily) AL541_RS03395 PF05362 Lon protease (S16) C-terminal proteolytic domain AL541_RS03395 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL541_RS03395 PF00004 ATPase family associated with various cellular activities (AAA) AL541_RS03400 PF00216 Bacterial DNA-binding protein AL541_RS03405 PF13145 PPIC-type PPIASE domain AL541_RS03425 PF13286 Phosphohydrolase-associated domain AL541_RS03425 PF01966 HD domain AL541_RS03435 PF00155 Aminotransferase class I and II AL541_RS03440 PF00425 chorismate binding enzyme AL541_RS03445 PF16582 Middle domain of thiamine pyrophosphate AL541_RS03445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL541_RS03445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL541_RS03450 PF12697 Alpha/beta hydrolase family AL541_RS03455 PF00378 Enoyl-CoA hydratase/isomerase AL541_RS03460 PF13378 Enolase C-terminal domain-like AL541_RS03465 PF13193 AMP-binding enzyme C-terminal domain AL541_RS03465 PF00501 AMP-binding enzyme AL541_RS03475 PF03601 Conserved hypothetical protein 698 AL541_RS03480 PF07690 Major Facilitator Superfamily AL541_RS03525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_RS03525 PF00529 HlyD membrane-fusion protein of T1SS AL541_RS03530 PF00873 AcrB/AcrD/AcrF family AL541_RS03545 PF00291 Pyridoxal-phosphate dependent enzyme AL541_RS03550 PF01037 Lrp/AsnC ligand binding domain AL541_RS03550 PF13404 AsnC-type helix-turn-helix domain AL541_RS03565 PF09619 Type III secretion system lipoprotein chaperone (YscW) AL541_RS03570 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL541_RS03580 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS03590 PF00588 SpoU rRNA Methylase family AL541_RS03590 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL541_RS03595 PF00478 IMP dehydrogenase / GMP reductase domain AL541_RS03595 PF00571 CBS domain AL541_RS03600 PF00403 Heavy-metal-associated domain AL541_RS03605 PF01048 Phosphorylase superfamily AL541_RS03615 PF00672 HAMP domain AL541_RS03615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS03620 PF01230 HIT domain AL541_RS03635 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL541_RS03635 PF13036 Peptidoglycan-synthase activator LpoB AL541_RS03640 PF01636 Phosphotransferase enzyme family AL541_RS03645 PF05728 Uncharacterised protein family (UPF0227) AL541_RS03650 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS03665 PF00270 DEAD/DEAH box helicase AL541_RS03665 PF02559 CarD-like/TRCF domain AL541_RS03665 PF17757 UvrB interaction domain AL541_RS03665 PF03461 TRCF domain AL541_RS03665 PF00271 Helicase conserved C-terminal domain AL541_RS03675 PF12704 MacB-like periplasmic core domain AL541_RS03675 PF02687 FtsX-like permease family AL541_RS03680 PF00005 ABC transporter AL541_RS03685 PF02687 FtsX-like permease family AL541_RS03685 PF12704 MacB-like periplasmic core domain AL541_RS03695 PF00753 Metallo-beta-lactamase superfamily AL541_RS03695 PF13567 Domain of unknown function (DUF4131) AL541_RS03695 PF03772 Competence protein AL541_RS03705 PF00005 ABC transporter AL541_RS03705 PF00664 ABC transporter transmembrane region AL541_RS03710 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL541_RS03715 PF03966 Trm112p-like protein AL541_RS03720 PF02348 Cytidylyltransferase AL541_RS03725 PF04293 SpoVR like protein AL541_RS03730 PF04285 Protein of unknown function (DUF444) AL541_RS03735 PF06798 PrkA serine protein kinase C-terminal domain AL541_RS03735 PF08298 PrkA AAA domain AL541_RS03745 PF03887 YfbU domain AL541_RS03755 PF04055 Radical SAM superfamily AL541_RS03765 PF01228 Glycine radical AL541_RS03765 PF02901 Pyruvate formate lyase-like AL541_RS03785 PF00005 ABC transporter AL541_RS03790 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_RS03795 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS03800 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS03810 PF03372 Endonuclease/Exonuclease/phosphatase family AL541_RS03815 PF10689 Protein of unknown function (DUF2496) AL541_RS03820 PF07445 Primosomal replication protein priC AL541_RS03825 PF01925 Sulfite exporter TauE/SafE AL541_RS03830 PF13307 Helicase C-terminal domain AL541_RS03830 PF06733 DEAD_2 AL541_RS03840 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL541_RS03845 PF00849 RNA pseudouridylate synthase AL541_RS03850 PF03971 Monomeric isocitrate dehydrogenase AL541_RS03855 PF00313 'Cold-shock' DNA-binding domain AL541_RS03860 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL541_RS03865 PF02861 Clp amino terminal domain, pathogenicity island component AL541_RS03865 PF17871 AAA lid domain AL541_RS03865 PF07724 AAA domain (Cdc48 subfamily) AL541_RS03865 PF00004 ATPase family associated with various cellular activities (AAA) AL541_RS03865 PF10431 C-terminal, D2-small domain, of ClpB protein AL541_RS03870 PF01176 Translation initiation factor 1A / IF-1 AL541_RS03875 PF04377 Arginine-tRNA-protein transferase, C terminus AL541_RS03875 PF04376 Arginine-tRNA-protein transferase, N terminus AL541_RS03880 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AL541_RS03890 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL541_RS03895 PF10692 Protein of unknown function (DUF2498) AL541_RS03900 PF08272 Topoisomerase I zinc-ribbon-like AL541_RS03900 PF01396 Topoisomerase DNA binding C4 zinc finger AL541_RS03900 PF01751 Toprim domain AL541_RS03900 PF01131 DNA topoisomerase AL541_RS03905 PF00483 Nucleotidyl transferase AL541_RS03910 PF08323 Starch synthase catalytic domain AL541_RS03910 PF00534 Glycosyl transferases group 1 AL541_RS03930 PF04994 TfoX C-terminal domain AL541_RS03930 PF04993 TfoX N-terminal domain AL541_RS03935 PF00356 Bacterial regulatory proteins, lacI family AL541_RS03940 PF02613 Nitrate reductase delta subunit AL541_RS03945 PF00486 Transcriptional regulatory protein, C terminal AL541_RS03945 PF00072 Response regulator receiver domain AL541_RS03950 PF02698 DUF218 domain AL541_RS03955 PF13847 Methyltransferase domain AL541_RS03960 PF17192 MukF middle domain AL541_RS03960 PF17193 MukF C-terminal domain AL541_RS03960 PF03882 MukF winged-helix domain AL541_RS03965 PF04288 MukE-like family AL541_RS03970 PF04310 MukB N-terminal AL541_RS03970 PF16330 MukB hinge domain AL541_RS03990 PF18030 RimK PreATP-grasp domain AL541_RS03990 PF08443 RimK-like ATP-grasp domain AL541_RS04000 PF08003 Protein of unknown function (DUF1698) AL541_RS04005 PF13649 Methyltransferase domain AL541_RS04010 PF01904 Protein of unknown function DUF72 AL541_RS04015 PF00152 tRNA synthetases class II (D, K and N) AL541_RS04015 PF02938 GAD domain AL541_RS04015 PF01336 OB-fold nucleic acid binding domain AL541_RS04020 PF01709 Transcriptional regulator AL541_RS04025 PF02075 Crossover junction endodeoxyribonuclease RuvC AL541_RS04030 PF01330 RuvA N terminal domain AL541_RS04030 PF07499 RuvA, C-terminal domain AL541_RS04035 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL541_RS04035 PF17864 RuvB AAA lid domain AL541_RS04035 PF05491 RuvB C-terminal winged helix domain AL541_RS04040 PF01654 Cytochrome bd terminal oxidase subunit I AL541_RS04045 PF02322 Cytochrome bd terminal oxidase subunit II AL541_RS04050 PF08173 Membrane bound YbgT-like protein AL541_RS04060 PF03061 Thioesterase superfamily AL541_RS04065 PF01618 MotA/TolQ/ExbB proton channel family AL541_RS04070 PF02472 Biopolymer transport protein ExbD/TolR AL541_RS04080 PF04052 TolB amino-terminal domain AL541_RS04080 PF07676 WD40-like Beta Propeller Repeat AL541_RS04085 PF00691 OmpA family AL541_RS04090 PF16331 TolA binding protein trimerisation AL541_RS04090 PF13174 Tetratricopeptide repeat AL541_RS04095 PF02445 Quinolinate synthetase A protein AL541_RS04105 PF03994 Domain of Unknown Function (DUF350) AL541_RS04115 PF03738 Glutathionylspermidine synthase preATP-grasp AL541_RS04125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS04125 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS04125 PF09308 LuxQ, periplasmic AL541_RS04125 PF00072 Response regulator receiver domain AL541_RS04130 PF06610 L-alanine exporter AL541_RS04140 PF02322 Cytochrome bd terminal oxidase subunit II AL541_RS04145 PF01654 Cytochrome bd terminal oxidase subunit I AL541_RS04160 PF17200 Single Cache domain 2 AL541_RS04160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS04160 PF00672 HAMP domain AL541_RS04165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_RS04165 PF00529 HlyD membrane-fusion protein of T1SS AL541_RS04170 PF00873 AcrB/AcrD/AcrF family AL541_RS04185 PF00579 tRNA synthetases class I (W and Y) AL541_RS04195 PF03372 Endonuclease/Exonuclease/phosphatase family AL541_RS04205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS04205 PF00672 HAMP domain AL541_RS04210 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL541_RS04220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS04220 PF03466 LysR substrate binding domain AL541_RS04230 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL541_RS04230 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL541_RS04235 PF01037 Lrp/AsnC ligand binding domain AL541_RS04240 PF09397 Ftsk gamma domain AL541_RS04240 PF01580 FtsK/SpoIIIE family AL541_RS04240 PF17854 FtsK alpha domain AL541_RS04240 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL541_RS04245 PF03548 Outer membrane lipoprotein carrier protein LolA AL541_RS04250 PF00004 ATPase family associated with various cellular activities (AAA) AL541_RS04250 PF12002 MgsA AAA+ ATPase C terminal AL541_RS04250 PF16193 AAA C-terminal domain AL541_RS04255 PF02403 Seryl-tRNA synthetase N-terminal domain AL541_RS04255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL541_RS04270 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL541_RS04275 PF00202 Aminotransferase class-III AL541_RS04280 PF04055 Radical SAM superfamily AL541_RS04280 PF06968 Biotin and Thiamin Synthesis associated domain AL541_RS04285 PF00155 Aminotransferase class I and II AL541_RS04290 PF08241 Methyltransferase domain AL541_RS04305 PF01435 Peptidase family M48 AL541_RS04315 PF00106 short chain dehydrogenase AL541_RS04340 PF16036 Chalcone isomerase-like AL541_RS04350 PF08328 Adenylosuccinate lyase C-terminal AL541_RS04350 PF00206 Lyase AL541_RS04355 PF04356 Protein of unknown function (DUF489) AL541_RS04370 PF00294 pfkB family carbohydrate kinase AL541_RS04375 PF00816 H-NS histone family AL541_RS04380 PF03553 Na+/H+ antiporter family AL541_RS04385 PF01634 ATP phosphoribosyltransferase AL541_RS04385 PF08029 HisG, C-terminal domain AL541_RS04390 PF00815 Histidinol dehydrogenase AL541_RS04395 PF00155 Aminotransferase class I and II AL541_RS04400 PF00475 Imidazoleglycerol-phosphate dehydratase AL541_RS04400 PF08645 Polynucleotide kinase 3 phosphatase AL541_RS04405 PF00117 Glutamine amidotransferase class-I AL541_RS04410 PF00977 Histidine biosynthesis protein AL541_RS04415 PF00977 Histidine biosynthesis protein AL541_RS04420 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL541_RS04420 PF01502 Phosphoribosyl-AMP cyclohydrolase AL541_RS04425 PF02810 SEC-C motif AL541_RS04430 PF08668 HDOD domain AL541_RS04430 PF00563 EAL domain AL541_RS04435 PF00149 Calcineurin-like phosphoesterase AL541_RS04440 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL541_RS04445 PF09190 DALR domain AL541_RS04445 PF01406 tRNA synthetases class I (C) catalytic domain AL541_RS04450 PF00265 Thymidine kinase AL541_RS04455 PF02698 DUF218 domain AL541_RS04480 PF01226 Formate/nitrite transporter AL541_RS04490 PF03649 Uncharacterised protein family (UPF0014) AL541_RS04495 PF06796 Periplasmic nitrate reductase protein NapE AL541_RS04500 PF03264 NapC/NirT cytochrome c family, N-terminal region AL541_RS04505 PF18364 Molybdopterin oxidoreductase N-terminal domain AL541_RS04505 PF00384 Molybdopterin oxidoreductase AL541_RS04505 PF01568 Molydopterin dinucleotide binding domain AL541_RS04510 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL541_RS04510 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL541_RS04520 PF02833 DHHA2 domain AL541_RS04520 PF01368 DHH family AL541_RS04530 PF00005 ABC transporter AL541_RS04535 PF00005 ABC transporter AL541_RS04535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS04540 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS04540 PF12911 N-terminal TM domain of oligopeptide transport permease C AL541_RS04545 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS04550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_RS04555 PF02954 Bacterial regulatory protein, Fis family AL541_RS04555 PF00158 Sigma-54 interaction domain AL541_RS04560 PF04012 PspA/IM30 family AL541_RS04565 PF06667 Phage shock protein B AL541_RS04570 PF04024 PspC domain AL541_RS04580 PF13533 Biotin-lipoyl like AL541_RS04585 PF00873 AcrB/AcrD/AcrF family AL541_RS04590 PF03352 Methyladenine glycosylase AL541_RS04595 PF03280 Proteobacterial lipase chaperone protein AL541_RS04600 PF00561 alpha/beta hydrolase fold AL541_RS04605 PF01053 Cys/Met metabolism PLP-dependent enzyme AL541_RS04610 PF13091 PLD-like domain AL541_RS04610 PF13396 Phospholipase_D-nuclease N-terminal AL541_RS04615 PF00209 Sodium:neurotransmitter symporter family AL541_RS04620 PF00849 RNA pseudouridylate synthase AL541_RS04630 PF00175 Oxidoreductase NAD-binding domain AL541_RS04630 PF00111 2Fe-2S iron-sulfur cluster binding domain AL541_RS04630 PF00970 Oxidoreductase FAD-binding domain AL541_RS04635 PF03063 Prismane/CO dehydrogenase family AL541_RS04640 PF00158 Sigma-54 interaction domain AL541_RS04640 PF01590 GAF domain AL541_RS04655 PF01066 CDP-alcohol phosphatidyltransferase AL541_RS04660 PF00005 ABC transporter AL541_RS04665 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS04670 PF13416 Bacterial extracellular solute-binding protein AL541_RS04680 PF06945 Protein of unknown function (DUF1289) AL541_RS04695 PF02872 5'-nucleotidase, C-terminal domain AL541_RS04695 PF00149 Calcineurin-like phosphoesterase AL541_RS04705 PF01386 Ribosomal L25p family AL541_RS04710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS04715 PF00072 Response regulator receiver domain AL541_RS04715 PF00486 Transcriptional regulatory protein, C terminal AL541_RS04725 PF00271 Helicase conserved C-terminal domain AL541_RS04725 PF04851 Type III restriction enzyme, res subunit AL541_RS04730 PF00849 RNA pseudouridylate synthase AL541_RS04730 PF01479 S4 domain AL541_RS04740 PF07690 Major Facilitator Superfamily AL541_RS04750 PF11066 Protein of unknown function (DUF2867) AL541_RS04750 PF13460 NAD(P)H-binding AL541_RS04755 PF01554 MatE AL541_RS04760 PF00005 ABC transporter AL541_RS04775 PF06965 Na+/H+ antiporter 1 AL541_RS04785 PF16295 Tetracyclin repressor-like, C-terminal domain AL541_RS04785 PF00440 Bacterial regulatory proteins, tetR family AL541_RS04790 PF09317 Domain of unknown function (DUF1974) AL541_RS04790 PF02770 Acyl-CoA dehydrogenase, middle domain AL541_RS04790 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL541_RS04790 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL541_RS04795 PF07055 Enoyl reductase FAD binding domain AL541_RS04795 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL541_RS04795 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL541_RS04800 PF02080 TrkA-C domain AL541_RS04800 PF06826 Predicted Permease Membrane Region AL541_RS04805 PF00462 Glutaredoxin AL541_RS04810 PF00465 Iron-containing alcohol dehydrogenase AL541_RS04815 PF01380 SIS domain AL541_RS04815 PF01418 Helix-turn-helix domain, rpiR family AL541_RS04820 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL541_RS04830 PF03956 Lysine exporter LysO AL541_RS04850 PF04993 TfoX N-terminal domain AL541_RS04850 PF04994 TfoX C-terminal domain AL541_RS04865 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_RS04865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS04865 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS04875 PF00266 Aminotransferase class-V AL541_RS04880 PF00291 Pyridoxal-phosphate dependent enzyme AL541_RS04885 PF00005 ABC transporter AL541_RS04885 PF00664 ABC transporter transmembrane region AL541_RS04890 PF00005 ABC transporter AL541_RS04890 PF00664 ABC transporter transmembrane region AL541_RS04895 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS04905 PF00266 Aminotransferase class-V AL541_RS04915 PF00072 Response regulator receiver domain AL541_RS04915 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS04920 PF00939 Sodium:sulfate symporter transmembrane region AL541_RS04925 PF02698 DUF218 domain AL541_RS04930 PF00390 Malic enzyme, N-terminal domain AL541_RS04930 PF03949 Malic enzyme, NAD binding domain AL541_RS04935 PF04408 Helicase associated domain (HA2) AL541_RS04935 PF00270 DEAD/DEAH box helicase AL541_RS04935 PF11898 Domain of unknown function (DUF3418) AL541_RS04935 PF00271 Helicase conserved C-terminal domain AL541_RS04935 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL541_RS04945 PF01797 Transposase IS200 like AL541_RS04950 PF16655 PhoD-like phosphatase, N-terminal domain AL541_RS04950 PF09423 PhoD-like phosphatase AL541_RS04955 PF01259 SAICAR synthetase AL541_RS04975 PF00691 OmpA family AL541_RS04975 PF05736 OprF membrane domain AL541_RS04990 PF13183 4Fe-4S dicluster domain AL541_RS04990 PF01565 FAD binding domain AL541_RS04990 PF02913 FAD linked oxidases, C-terminal domain AL541_RS04995 PF04191 Phospholipid methyltransferase AL541_RS05005 PF00221 Aromatic amino acid lyase AL541_RS05010 PF17391 Urocanase N-terminal domain AL541_RS05010 PF17392 Urocanase C-terminal domain AL541_RS05010 PF01175 Urocanase Rossmann-like domain AL541_RS05015 PF00491 Arginase family AL541_RS05020 PF01979 Amidohydrolase family AL541_RS05025 PF07702 UTRA domain AL541_RS05025 PF00392 Bacterial regulatory proteins, gntR family AL541_RS05040 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL541_RS05040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL541_RS05040 PF02824 TGS domain AL541_RS05040 PF03129 Anticodon binding domain AL541_RS05045 PF00707 Translation initiation factor IF-3, C-terminal domain AL541_RS05045 PF05198 Translation initiation factor IF-3, N-terminal domain AL541_RS05050 PF01632 Ribosomal protein L35 AL541_RS05055 PF00453 Ribosomal protein L20 AL541_RS05060 PF01906 Putative heavy-metal-binding AL541_RS05095 PF01409 tRNA synthetases class II core domain (F) AL541_RS05095 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL541_RS05100 PF03483 B3/4 domain AL541_RS05100 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL541_RS05100 PF01588 Putative tRNA binding domain AL541_RS05100 PF03147 Ferredoxin-fold anticodon binding domain AL541_RS05100 PF03484 tRNA synthetase B5 domain AL541_RS05110 PF00216 Bacterial DNA-binding protein AL541_RS05120 PF05724 Thiopurine S-methyltransferase (TPMT) AL541_RS05125 PF02222 ATP-grasp domain AL541_RS05130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL541_RS05130 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL541_RS05135 PF04172 LrgB-like family AL541_RS05140 PF03788 LrgA family AL541_RS05145 PF08411 Exonuclease C-terminal AL541_RS05145 PF00929 Exonuclease AL541_RS05150 PF00375 Sodium:dicarboxylate symporter family AL541_RS05155 PF13460 NAD(P)H-binding AL541_RS05160 PF02277 Phosphoribosyltransferase AL541_RS05165 PF02654 Cobalamin-5-phosphate synthase AL541_RS05170 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL541_RS05185 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL541_RS05190 PF01032 FecCD transport family AL541_RS05195 PF00005 ABC transporter AL541_RS05215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS05215 PF03466 LysR substrate binding domain AL541_RS05225 PF01863 Protein of unknown function DUF45 AL541_RS05230 PF05971 RNA methyltransferase AL541_RS05250 PF00392 Bacterial regulatory proteins, gntR family AL541_RS05255 PF00171 Aldehyde dehydrogenase family AL541_RS05260 PF05544 Proline racemase AL541_RS05265 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL541_RS05265 PF01266 FAD dependent oxidoreductase AL541_RS05275 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL541_RS05280 PF00701 Dihydrodipicolinate synthetase family AL541_RS05285 PF00005 ABC transporter AL541_RS05285 PF08402 TOBE domain AL541_RS05290 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS05295 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS05305 PF08453 Peptidase family M9 N-terminal AL541_RS05305 PF01752 Collagenase AL541_RS05315 PF00005 ABC transporter AL541_RS05315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS05320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS05320 PF00005 ABC transporter AL541_RS05325 PF12911 N-terminal TM domain of oligopeptide transport permease C AL541_RS05325 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS05330 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS05335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_RS05340 PF01546 Peptidase family M20/M25/M40 AL541_RS05340 PF07687 Peptidase dimerisation domain AL541_RS05345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_RS05350 PF04209 homogentisate 1,2-dioxygenase AL541_RS05360 PF14497 Glutathione S-transferase, C-terminal domain AL541_RS05360 PF02798 Glutathione S-transferase, N-terminal domain AL541_RS05520 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AL541_RS05535 PF03553 Na+/H+ antiporter family AL541_RS05540 PF00120 Glutamine synthetase, catalytic domain AL541_RS05550 PF07722 Peptidase C26 AL541_RS05555 PF07883 Cupin domain AL541_RS05555 PF01381 Helix-turn-helix AL541_RS05560 PF00171 Aldehyde dehydrogenase family AL541_RS05565 PF01266 FAD dependent oxidoreductase AL541_RS05570 PF00795 Carbon-nitrogen hydrolase AL541_RS05575 PF04371 Porphyromonas-type peptidyl-arginine deiminase AL541_RS05580 PF00171 Aldehyde dehydrogenase family AL541_RS05585 PF00202 Aminotransferase class-III AL541_RS05590 PF00563 EAL domain AL541_RS05590 PF12792 CSS motif domain associated with EAL AL541_RS05600 PF01047 MarR family AL541_RS05605 PF04237 YjbR AL541_RS05630 PF00072 Response regulator receiver domain AL541_RS05630 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL541_RS05630 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS05630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS05630 PF00672 HAMP domain AL541_RS05630 PF01627 Hpt domain AL541_RS05635 PF00563 EAL domain AL541_RS05635 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS05635 PF03707 Bacterial signalling protein N terminal repeat AL541_RS05650 PF04204 Homoserine O-succinyltransferase AL541_RS05660 PF00893 Small Multidrug Resistance protein AL541_RS05665 PF03279 Bacterial lipid A biosynthesis acyltransferase AL541_RS05670 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL541_RS05705 PF07508 Recombinase AL541_RS05705 PF00239 Resolvase, N terminal domain AL541_RS05705 PF13408 Recombinase zinc beta ribbon domain AL541_RS05745 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL541_RS05745 PF01926 50S ribosome-binding GTPase AL541_RS05750 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL541_RS05750 PF01926 50S ribosome-binding GTPase AL541_RS05760 PF00816 H-NS histone family AL541_RS05800 PF07510 Protein of unknown function (DUF1524) AL541_RS05815 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AL541_RS05840 PF17152 Periplasmic sensor domain AL541_RS05840 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS05885 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL541_RS05890 PF01810 LysE type translocator AL541_RS05900 PF01235 Sodium:alanine symporter family AL541_RS05925 PF00884 Sulfatase AL541_RS05930 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL541_RS05935 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS05940 PF00005 ABC transporter AL541_RS05940 PF00571 CBS domain AL541_RS05955 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_RS05960 PF00583 Acetyltransferase (GNAT) family AL541_RS05965 PF00202 Aminotransferase class-III AL541_RS05970 PF06339 Ectoine synthase AL541_RS05975 PF13840 ACT domain AL541_RS05975 PF00696 Amino acid kinase family AL541_RS05980 PF00884 Sulfatase AL541_RS05990 PF03781 Sulfatase-modifying factor enzyme 1 AL541_RS05995 PF13186 Iron-sulfur cluster-binding domain AL541_RS05995 PF04055 Radical SAM superfamily AL541_RS06010 PF00884 Sulfatase AL541_RS06015 PF00884 Sulfatase AL541_RS06035 PF02321 Outer membrane efflux protein AL541_RS06050 PF00455 DeoR C terminal sensor domain AL541_RS06050 PF08220 DeoR-like helix-turn-helix domain AL541_RS06055 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL541_RS06055 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL541_RS06060 PF03928 Haem-degrading AL541_RS06065 PF00072 Response regulator receiver domain AL541_RS06065 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS06085 PF00939 Sodium:sulfate symporter transmembrane region AL541_RS06090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS06090 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS06095 PF00158 Sigma-54 interaction domain AL541_RS06095 PF00072 Response regulator receiver domain AL541_RS06095 PF02954 Bacterial regulatory protein, Fis family AL541_RS06100 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS06100 PF03707 Bacterial signalling protein N terminal repeat AL541_RS06100 PF00563 EAL domain AL541_RS06105 PF01966 HD domain AL541_RS06105 PF11871 Domain of unknown function (DUF3391) AL541_RS06110 PF01810 LysE type translocator AL541_RS06115 PF11230 Protein of unknown function (DUF3029) AL541_RS06120 PF04055 Radical SAM superfamily AL541_RS06130 PF03741 Integral membrane protein TerC family AL541_RS06140 PF01966 HD domain AL541_RS06145 PF00465 Iron-containing alcohol dehydrogenase AL541_RS06150 PF03222 Tryptophan/tyrosine permease family AL541_RS06155 PF01966 HD domain AL541_RS06155 PF11871 Domain of unknown function (DUF3391) AL541_RS06165 PF00005 ABC transporter AL541_RS06170 PF01497 Periplasmic binding protein AL541_RS06175 PF01032 FecCD transport family AL541_RS06180 PF00593 TonB dependent receptor AL541_RS06180 PF07715 TonB-dependent Receptor Plug Domain AL541_RS06190 PF00005 ABC transporter AL541_RS06190 PF00664 ABC transporter transmembrane region AL541_RS06195 PF00005 ABC transporter AL541_RS06195 PF00664 ABC transporter transmembrane region AL541_RS06200 PF08334 Type II secretion system (T2SS), protein G AL541_RS06200 PF07963 Prokaryotic N-terminal methylation motif AL541_RS06210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS06210 PF03466 LysR substrate binding domain AL541_RS06220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL541_RS06220 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL541_RS06235 PF00012 Hsp70 protein AL541_RS06240 PF00012 Hsp70 protein AL541_RS06250 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS06285 PF02525 Flavodoxin-like fold AL541_RS06290 PF04408 Helicase associated domain (HA2) AL541_RS06290 PF00271 Helicase conserved C-terminal domain AL541_RS06290 PF00270 DEAD/DEAH box helicase AL541_RS06290 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL541_RS06290 PF11898 Domain of unknown function (DUF3418) AL541_RS06305 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_RS06315 PF02397 Bacterial sugar transferase AL541_RS06325 PF00534 Glycosyl transferases group 1 AL541_RS06325 PF13439 Glycosyltransferase Family 4 AL541_RS06355 PF00534 Glycosyl transferases group 1 AL541_RS06355 PF13439 Glycosyltransferase Family 4 AL541_RS06360 PF00534 Glycosyl transferases group 1 AL541_RS06365 PF00158 Sigma-54 interaction domain AL541_RS06365 PF00072 Response regulator receiver domain AL541_RS06365 PF02954 Bacterial regulatory protein, Fis family AL541_RS06380 PF10531 SLBB domain AL541_RS06380 PF02563 Polysaccharide biosynthesis/export protein AL541_RS06390 PF01740 STAS domain AL541_RS06395 PF14743 DNA ligase OB-like domain AL541_RS06395 PF01068 ATP dependent DNA ligase domain AL541_RS06405 PF01554 MatE AL541_RS06410 PF00677 Lumazine binding domain AL541_RS06420 PF03881 Fructosamine kinase AL541_RS06425 PF00072 Response regulator receiver domain AL541_RS06425 PF01339 CheB methylesterase AL541_RS06430 PF05230 MASE2 domain AL541_RS06430 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS06440 PF00877 NlpC/P60 family AL541_RS06470 PF03942 DTW domain AL541_RS06475 PF00480 ROK family AL541_RS06485 PF00994 Probable molybdopterin binding domain AL541_RS06485 PF03453 MoeA N-terminal region (domain I and II) AL541_RS06485 PF03454 MoeA C-terminal region (domain IV) AL541_RS06490 PF12804 MobA-like NTP transferase domain AL541_RS06495 PF00005 ABC transporter AL541_RS06495 PF08402 TOBE domain AL541_RS06500 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS06505 PF12849 PBP superfamily domain AL541_RS06510 PF00158 Sigma-54 interaction domain AL541_RS06510 PF02954 Bacterial regulatory protein, Fis family AL541_RS06510 PF00072 Response regulator receiver domain AL541_RS06515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS06515 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS06525 PF12848 ABC transporter AL541_RS06525 PF00005 ABC transporter AL541_RS06530 PF02634 FdhD/NarQ family AL541_RS06550 PF02613 Nitrate reductase delta subunit AL541_RS06560 PF01568 Molydopterin dinucleotide binding domain AL541_RS06560 PF00384 Molybdopterin oxidoreductase AL541_RS06560 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL541_RS06565 PF13247 4Fe-4S dicluster domain AL541_RS06580 PF05593 RHS Repeat AL541_RS06580 PF03527 RHS protein AL541_RS06715 PF00909 Ammonium Transporter Family AL541_RS06720 PF02146 Sir2 family AL541_RS06725 PF13416 Bacterial extracellular solute-binding protein AL541_RS06730 PF13416 Bacterial extracellular solute-binding protein AL541_RS06735 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS06740 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS06745 PF00005 ABC transporter AL541_RS06745 PF08402 TOBE domain AL541_RS06765 PF01171 PP-loop family AL541_RS06770 PF00582 Universal stress protein family AL541_RS06775 PF13545 Crp-like helix-turn-helix domain AL541_RS06775 PF00027 Cyclic nucleotide-binding domain AL541_RS06790 PF00403 Heavy-metal-associated domain AL541_RS06800 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL541_RS06800 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL541_RS06815 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL541_RS06830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS06830 PF00072 Response regulator receiver domain AL541_RS06830 PF09308 LuxQ, periplasmic AL541_RS06830 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS06855 PF06303 MatP N-terminal domain AL541_RS06855 PF17414 MatP C-terminal ribbon-helix-helix domain AL541_RS06860 PF05362 Lon protease (S16) C-terminal proteolytic domain AL541_RS06860 PF13654 AAA domain AL541_RS06865 PF07977 FabA-like domain AL541_RS06870 PF04957 Ribosome modulation factor AL541_RS06880 PF00005 ABC transporter AL541_RS06880 PF16326 ABC transporter C-terminal domain AL541_RS06880 PF12848 ABC transporter AL541_RS06890 PF10672 S-adenosylmethionine-dependent methyltransferase AL541_RS06890 PF01170 Putative RNA methylase family UPF0020 AL541_RS06890 PF02926 THUMP domain AL541_RS06895 PF07126 Cell-division protein ZapC AL541_RS06900 PF01180 Dihydroorotate dehydrogenase AL541_RS06905 PF05088 Bacterial NAD-glutamate dehydrogenase AL541_RS06915 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL541_RS06915 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL541_RS06915 PF01433 Peptidase family M1 domain AL541_RS06925 PF00595 PDZ domain AL541_RS06925 PF03572 Peptidase family S41 AL541_RS06925 PF11818 C-terminal domain of tail specific protease (DUF3340) AL541_RS06925 PF17804 Tail specific protease N-terminal domain AL541_RS06930 PF04352 ProQ/FINO family AL541_RS06930 PF17516 ProQ C-terminal domain AL541_RS06935 PF13185 GAF domain AL541_RS06940 PF00664 ABC transporter transmembrane region AL541_RS06940 PF00005 ABC transporter AL541_RS06945 PF04403 Paraquat-inducible protein A AL541_RS06950 PF02470 MlaD protein AL541_RS06955 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL541_RS06955 PF01189 16S rRNA methyltransferase RsmB/F AL541_RS06955 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL541_RS06975 PF00793 DAHP synthetase I family AL541_RS06980 PF04461 Protein of unknown function (DUF520) AL541_RS06985 PF14824 Sirohaem biosynthesis protein central AL541_RS06985 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL541_RS06985 PF10414 Sirohaem synthase dimerisation region AL541_RS06995 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_RS07000 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS07005 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS07010 PF00005 ABC transporter AL541_RS07015 PF01027 Inhibitor of apoptosis-promoting Bax1 AL541_RS07025 PF04358 DsrC like protein AL541_RS07030 PF00708 Acylphosphatase AL541_RS07035 PF02743 Cache domain AL541_RS07035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS07035 PF00672 HAMP domain AL541_RS07040 PF17785 PUA-like domain AL541_RS07040 PF10672 S-adenosylmethionine-dependent methyltransferase AL541_RS07055 PF00691 OmpA family AL541_RS07080 PF05736 OprF membrane domain AL541_RS07080 PF00691 OmpA family AL541_RS07090 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS07095 PF01614 Bacterial transcriptional regulator AL541_RS07095 PF09339 IclR helix-turn-helix domain AL541_RS07105 PF00248 Aldo/keto reductase family AL541_RS07110 PF03466 LysR substrate binding domain AL541_RS07110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS07120 PF03466 LysR substrate binding domain AL541_RS07120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS07125 PF07690 Major Facilitator Superfamily AL541_RS07135 PF14765 Polyketide synthase dehydratase AL541_RS07135 PF00550 Phosphopantetheine attachment site AL541_RS07135 PF16197 Ketoacyl-synthetase C-terminal extension AL541_RS07135 PF00698 Acyl transferase domain AL541_RS07135 PF00107 Zinc-binding dehydrogenase AL541_RS07135 PF08240 Alcohol dehydrogenase GroES-like domain AL541_RS07135 PF08659 KR domain AL541_RS07135 PF02801 Beta-ketoacyl synthase, C-terminal domain AL541_RS07135 PF00109 Beta-ketoacyl synthase, N-terminal domain AL541_RS07140 PF02311 AraC-like ligand binding domain AL541_RS07140 PF12833 Helix-turn-helix domain AL541_RS07145 PF00857 Isochorismatase family AL541_RS07150 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_RS07160 PF00107 Zinc-binding dehydrogenase AL541_RS07160 PF08240 Alcohol dehydrogenase GroES-like domain AL541_RS07165 PF00809 Pterin binding enzyme AL541_RS07165 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL541_RS07165 PF02607 B12 binding domain AL541_RS07165 PF02310 B12 binding domain AL541_RS07165 PF02574 Homocysteine S-methyltransferase AL541_RS07170 PF00005 ABC transporter AL541_RS07175 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS07180 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_RS07190 PF00267 Gram-negative porin AL541_RS07195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS07195 PF03466 LysR substrate binding domain AL541_RS07205 PF00873 AcrB/AcrD/AcrF family AL541_RS07210 PF03466 LysR substrate binding domain AL541_RS07210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS07220 PF03466 LysR substrate binding domain AL541_RS07220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS07225 PF01810 LysE type translocator AL541_RS07235 PF06508 Queuosine biosynthesis protein QueC AL541_RS07240 PF04055 Radical SAM superfamily AL541_RS07255 PF00089 Trypsin AL541_RS07265 PF13193 AMP-binding enzyme C-terminal domain AL541_RS07265 PF16177 Acetyl-coenzyme A synthetase N-terminus AL541_RS07265 PF00501 AMP-binding enzyme AL541_RS07270 PF04303 PrpF protein AL541_RS07275 PF00694 Aconitase C-terminal domain AL541_RS07275 PF00330 Aconitase family (aconitate hydratase) AL541_RS07280 PF00285 Citrate synthase, C-terminal domain AL541_RS07310 PF01970 Tripartite tricarboxylate transporter TctA family AL541_RS07320 PF01925 Sulfite exporter TauE/SafE AL541_RS07325 PF16868 NMT1-like family AL541_RS07335 PF05844 YopD protein AL541_RS07345 PF07720 Tetratricopeptide repeat AL541_RS07350 PF04792 V antigen (LcrV) protein AL541_RS07360 PF09621 Type III secretion system regulator (LcrR) AL541_RS07365 PF00771 FHIPEP family AL541_RS07385 PF09059 TyeA AL541_RS07395 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL541_RS07395 PF18269 T3SS EscN ATPase C-terminal domain AL541_RS07395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL541_RS07410 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL541_RS07415 PF00813 FliP family AL541_RS07420 PF01313 Bacterial export proteins, family 3 AL541_RS07425 PF01311 Bacterial export proteins, family 1 AL541_RS07430 PF01312 FlhB HrpN YscU SpaS Family AL541_RS07435 PF12852 Cupin AL541_RS07435 PF12833 Helix-turn-helix domain AL541_RS07465 PF02661 Fic/DOC family AL541_RS07475 PF02108 Flagellar assembly protein FliH AL541_RS07485 PF01514 Secretory protein of YscJ/FliF family AL541_RS07490 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI AL541_RS07500 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) AL541_RS07505 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AL541_RS07515 PF16697 Inner membrane component of T3SS, cytoplasmic domain AL541_RS07515 PF16693 Inner membrane component of T3SS, periplasmic domain AL541_RS07520 PF03958 Bacterial type II/III secretion system short domain AL541_RS07520 PF00263 Bacterial type II and III secretion system protein AL541_RS07535 PF12833 Helix-turn-helix domain AL541_RS07555 PF00171 Aldehyde dehydrogenase family AL541_RS07560 PF02954 Bacterial regulatory protein, Fis family AL541_RS07560 PF00158 Sigma-54 interaction domain AL541_RS07560 PF01590 GAF domain AL541_RS07575 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL541_RS07575 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL541_RS07580 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL541_RS07585 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL541_RS07585 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL541_RS07590 PF12833 Helix-turn-helix domain AL541_RS07590 PF02311 AraC-like ligand binding domain AL541_RS07595 PF07715 TonB-dependent Receptor Plug Domain AL541_RS07595 PF00593 TonB dependent receptor AL541_RS07600 PF12431 Transcriptional regulator AL541_RS07600 PF00072 Response regulator receiver domain AL541_RS07605 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL541_RS07605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS07605 PF00989 PAS fold AL541_RS07605 PF17203 Single cache domain 3 AL541_RS07620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_RS07635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS07635 PF03466 LysR substrate binding domain AL541_RS07650 PF08543 Phosphomethylpyrimidine kinase AL541_RS07655 PF00155 Aminotransferase class I and II AL541_RS07660 PF06826 Predicted Permease Membrane Region AL541_RS07660 PF02080 TrkA-C domain AL541_RS07670 PF13533 Biotin-lipoyl like AL541_RS07685 PF00135 Carboxylesterase family AL541_RS07690 PF13091 PLD-like domain AL541_RS07695 PF17243 POTRA domain TamA domain 1 AL541_RS07695 PF01103 Surface antigen AL541_RS07700 PF11008 Protein of unknown function (DUF2846) AL541_RS07705 PF01810 LysE type translocator AL541_RS07710 PF01810 LysE type translocator AL541_RS07715 PF07237 Protein of unknown function (DUF1428) AL541_RS07735 PF02272 DHHA1 domain AL541_RS07735 PF01411 tRNA synthetases class II (A) AL541_RS07735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL541_RS07740 PF13302 Acetyltransferase (GNAT) domain AL541_RS07745 PF12464 Maltose acetyltransferase AL541_RS07745 PF14602 Hexapeptide repeat of succinyl-transferase AL541_RS07855 PF08274 PhnA Zinc-Ribbon AL541_RS07855 PF03831 PhnA domain AL541_RS07950 PF13333 Integrase core domain AL541_RS07950 PF13276 HTH-like domain AL541_RS07950 PF00665 Integrase core domain AL541_RS07965 PF00293 NUDIX domain AL541_RS07965 PF13344 Haloacid dehalogenase-like hydrolase AL541_RS08340 PF00857 Isochorismatase family AL541_RS08470 PF01810 LysE type translocator AL541_RS08540 PF04229 GrpB protein AL541_RS08635 PF04480 Protein of unknown function (DUF559) AL541_RS08650 PF00293 NUDIX domain AL541_RS08650 PF13344 Haloacid dehalogenase-like hydrolase AL541_RS08725 PF03544 Gram-negative bacterial TonB protein C-terminal AL541_RS08810 PF00877 NlpC/P60 family AL541_RS08840 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL541_RS08950 PF01648 4'-phosphopantetheinyl transferase superfamily AL541_RS08950 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AL541_RS08960 PF00793 DAHP synthetase I family AL541_RS08970 PF00425 chorismate binding enzyme AL541_RS08975 PF13193 AMP-binding enzyme C-terminal domain AL541_RS08975 PF00501 AMP-binding enzyme AL541_RS08980 PF00550 Phosphopantetheine attachment site AL541_RS08980 PF00857 Isochorismatase family AL541_RS08985 PF01497 Periplasmic binding protein AL541_RS08990 PF05977 Transmembrane secretion effector AL541_RS08995 PF01032 FecCD transport family AL541_RS09000 PF01032 FecCD transport family AL541_RS09005 PF00005 ABC transporter AL541_RS09010 PF13193 AMP-binding enzyme C-terminal domain AL541_RS09010 PF00668 Condensation domain AL541_RS09010 PF00550 Phosphopantetheine attachment site AL541_RS09010 PF00501 AMP-binding enzyme AL541_RS09015 PF03621 MbtH-like protein AL541_RS09020 PF00756 Putative esterase AL541_RS09020 PF11806 Domain of unknown function (DUF3327) AL541_RS09025 PF07715 TonB-dependent Receptor Plug Domain AL541_RS09045 PF13545 Crp-like helix-turn-helix domain AL541_RS09045 PF00027 Cyclic nucleotide-binding domain AL541_RS09060 PF02810 SEC-C motif AL541_RS09060 PF01043 SecA preprotein cross-linking domain AL541_RS09060 PF07517 SecA DEAD-like domain AL541_RS09060 PF07516 SecA Wing and Scaffold domain AL541_RS09135 PF13344 Haloacid dehalogenase-like hydrolase AL541_RS09135 PF00293 NUDIX domain AL541_RS09155 PF00857 Isochorismatase family AL541_RS09390 PF01043 SecA preprotein cross-linking domain AL541_RS09390 PF07517 SecA DEAD-like domain AL541_RS09390 PF02810 SEC-C motif AL541_RS09390 PF07516 SecA Wing and Scaffold domain AL541_RS09530 PF00589 Phage integrase family AL541_RS09530 PF13495 Phage integrase, N-terminal SAM-like domain AL541_RS09545 PF13302 Acetyltransferase (GNAT) domain AL541_RS09550 PF18024 Helix-turn-helix domain AL541_RS09550 PF00158 Sigma-54 interaction domain AL541_RS09555 PF05128 Domain of unknown function (DUF697) AL541_RS09560 PF04317 YcjX-like family, DUF463 AL541_RS09580 PF00425 chorismate binding enzyme AL541_RS09580 PF04715 Anthranilate synthase component I, N terminal region AL541_RS09585 PF00072 Response regulator receiver domain AL541_RS09585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS09585 PF09308 LuxQ, periplasmic AL541_RS09585 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS09595 PF00293 NUDIX domain AL541_RS09600 PF03222 Tryptophan/tyrosine permease family AL541_RS09605 PF03315 Serine dehydratase beta chain AL541_RS09605 PF03313 Serine dehydratase alpha chain AL541_RS09610 PF00563 EAL domain AL541_RS09610 PF04940 Sensors of blue-light using FAD AL541_RS09620 PF01242 6-pyruvoyl tetrahydropterin synthase AL541_RS09625 PF17200 Single Cache domain 2 AL541_RS09625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS09625 PF00672 HAMP domain AL541_RS09630 PF00152 tRNA synthetases class II (D, K and N) AL541_RS09630 PF01336 OB-fold nucleic acid binding domain AL541_RS09640 PF00392 Bacterial regulatory proteins, gntR family AL541_RS09640 PF00155 Aminotransferase class I and II AL541_RS09655 PF00155 Aminotransferase class I and II AL541_RS09675 PF00672 HAMP domain AL541_RS09675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS09680 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_RS09690 PF00072 Response regulator receiver domain AL541_RS09690 PF00196 Bacterial regulatory proteins, luxR family AL541_RS09695 PF17200 Single Cache domain 2 AL541_RS09695 PF07730 Histidine kinase AL541_RS09700 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL541_RS09710 PF03480 Bacterial extracellular solute-binding protein, family 7 AL541_RS09725 PF00753 Metallo-beta-lactamase superfamily AL541_RS09730 PF05951 Bacterial protein of unknown function (DUF882) AL541_RS09735 PF03734 L,D-transpeptidase catalytic domain AL541_RS09735 PF01471 Putative peptidoglycan binding domain AL541_RS09760 PF00925 GTP cyclohydrolase II AL541_RS09770 PF03918 Cytochrome C biogenesis protein AL541_RS09775 PF08534 Redoxin AL541_RS09780 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL541_RS09780 PF01578 Cytochrome C assembly protein AL541_RS09785 PF03916 Polysulphide reductase, NrfD AL541_RS09790 PF13247 4Fe-4S dicluster domain AL541_RS09800 PF02335 Cytochrome c552 AL541_RS09815 PF03989 DNA gyrase C-terminal domain, beta-propeller AL541_RS09815 PF00521 DNA gyrase/topoisomerase IV, subunit A AL541_RS09830 PF00317 Ribonucleotide reductase, all-alpha domain AL541_RS09830 PF02867 Ribonucleotide reductase, barrel domain AL541_RS09830 PF03477 ATP cone domain AL541_RS09835 PF00268 Ribonucleotide reductase, small chain AL541_RS09845 PF00994 Probable molybdopterin binding domain AL541_RS09860 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL541_RS09865 PF16653 Saccharopine dehydrogenase C-terminal domain AL541_RS09865 PF03435 Saccharopine dehydrogenase NADP binding domain AL541_RS09870 PF00202 Aminotransferase class-III AL541_RS09895 PF01066 CDP-alcohol phosphatidyltransferase AL541_RS09900 PF02151 UvrB/uvrC motif AL541_RS09900 PF01541 GIY-YIG catalytic domain AL541_RS09900 PF08459 UvrC Helix-hairpin-helix N-terminal AL541_RS09905 PF00196 Bacterial regulatory proteins, luxR family AL541_RS09905 PF00072 Response regulator receiver domain AL541_RS09910 PF00136 DNA polymerase family B AL541_RS09910 PF03104 DNA polymerase family B, exonuclease domain AL541_RS09920 PF09285 Elongation factor P, C-terminal AL541_RS09920 PF08207 Elongation factor P (EF-P) KOW-like domain AL541_RS09920 PF01132 Elongation factor P (EF-P) OB domain AL541_RS09925 PF04269 Protein of unknown function, DUF440 AL541_RS09930 PF01479 S4 domain AL541_RS09930 PF00849 RNA pseudouridylate synthase AL541_RS09940 PF01300 Telomere recombination AL541_RS09945 PF02811 PHP domain AL541_RS09950 PF08056 Tryptophan operon leader peptide AL541_RS09955 PF00425 chorismate binding enzyme AL541_RS09955 PF04715 Anthranilate synthase component I, N terminal region AL541_RS09960 PF00117 Glutamine amidotransferase class-I AL541_RS09965 PF02885 Glycosyl transferase family, helical bundle domain AL541_RS09965 PF00591 Glycosyl transferase family, a/b domain AL541_RS09970 PF00218 Indole-3-glycerol phosphate synthase AL541_RS09970 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL541_RS09975 PF00291 Pyridoxal-phosphate dependent enzyme AL541_RS09980 PF00290 Tryptophan synthase alpha chain AL541_RS09985 PF13545 Crp-like helix-turn-helix domain AL541_RS09985 PF00027 Cyclic nucleotide-binding domain AL541_RS09990 PF00501 AMP-binding enzyme AL541_RS09990 PF13193 AMP-binding enzyme C-terminal domain AL541_RS10000 PF00375 Sodium:dicarboxylate symporter family AL541_RS10005 PF17327 Acyl homoserine lactone synthase AL541_RS10010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS10010 PF00072 Response regulator receiver domain AL541_RS10020 PF04279 Intracellular septation protein A AL541_RS10025 PF03061 Thioesterase superfamily AL541_RS10030 PF03795 YCII-related domain AL541_RS10040 PF08267 Cobalamin-independent synthase, N-terminal domain AL541_RS10040 PF01717 Cobalamin-independent synthase, Catalytic domain AL541_RS10045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS10045 PF03466 LysR substrate binding domain AL541_RS10060 PF00563 EAL domain AL541_RS10060 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS10060 PF08447 PAS fold AL541_RS10060 PF08448 PAS fold AL541_RS10065 PF08497 Radical SAM N-terminal AL541_RS10065 PF04055 Radical SAM superfamily AL541_RS10065 PF11842 Domain of unknown function (DUF3362) AL541_RS10085 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AL541_RS10090 PF00535 Glycosyl transferase family 2 AL541_RS10095 PF00486 Transcriptional regulatory protein, C terminal AL541_RS10095 PF00072 Response regulator receiver domain AL541_RS10100 PF00672 HAMP domain AL541_RS10100 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS10100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS10120 PF03466 LysR substrate binding domain AL541_RS10120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS10125 PF00529 HlyD membrane-fusion protein of T1SS AL541_RS10125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_RS10135 PF01717 Cobalamin-independent synthase, Catalytic domain AL541_RS10135 PF08267 Cobalamin-independent synthase, N-terminal domain AL541_RS10155 PF00005 ABC transporter AL541_RS10155 PF12704 MacB-like periplasmic core domain AL541_RS10155 PF02687 FtsX-like permease family AL541_RS10160 PF00005 ABC transporter AL541_RS10160 PF02687 FtsX-like permease family AL541_RS10160 PF12704 MacB-like periplasmic core domain AL541_RS10165 PF12704 MacB-like periplasmic core domain AL541_RS10165 PF02687 FtsX-like permease family AL541_RS10165 PF00005 ABC transporter AL541_RS10175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_RS10195 PF00085 Thioredoxin AL541_RS10200 PF11412 Disulphide bond corrector protein DsbC AL541_RS10200 PF02683 Cytochrome C biogenesis protein transmembrane region AL541_RS10210 PF00196 Bacterial regulatory proteins, luxR family AL541_RS10210 PF00072 Response regulator receiver domain AL541_RS10215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS10215 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS10220 PF13247 4Fe-4S dicluster domain AL541_RS10225 PF03916 Polysulphide reductase, NrfD AL541_RS10230 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL541_RS10230 PF00384 Molybdopterin oxidoreductase AL541_RS10230 PF01568 Molydopterin dinucleotide binding domain AL541_RS10235 PF00034 Cytochrome c AL541_RS10240 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL541_RS10245 PF04403 Paraquat-inducible protein A AL541_RS10250 PF02470 MlaD protein AL541_RS10270 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_RS10275 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL541_RS10280 PF18073 Rubredoxin metal binding domain AL541_RS10285 PF06305 Lipopolysaccharide assembly protein A domain AL541_RS10290 PF00216 Bacterial DNA-binding protein AL541_RS10295 PF00575 S1 RNA binding domain AL541_RS10300 PF02224 Cytidylate kinase AL541_RS10305 PF01343 Peptidase family S49 AL541_RS10305 PF08496 Peptidase family S49 N-terminal AL541_RS10310 PF00106 short chain dehydrogenase AL541_RS10325 PF02811 PHP domain AL541_RS10325 PF01336 OB-fold nucleic acid binding domain AL541_RS10325 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL541_RS10325 PF14579 Helix-hairpin-helix motif AL541_RS10325 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL541_RS10330 PF01584 CheW-like domain AL541_RS10330 PF00072 Response regulator receiver domain AL541_RS10335 PF00480 ROK family AL541_RS10340 PF02887 Pyruvate kinase, alpha/beta domain AL541_RS10340 PF00224 Pyruvate kinase, barrel domain AL541_RS10345 PF01734 Patatin-like phospholipase AL541_RS10360 PF00209 Sodium:neurotransmitter symporter family AL541_RS10375 PF02378 Phosphotransferase system, EIIC AL541_RS10375 PF00367 phosphotransferase system, EIIB AL541_RS10380 PF01026 TatD related DNase AL541_RS10385 PF09115 DNA polymerase III, delta subunit, C terminal AL541_RS10390 PF02223 Thymidylate kinase AL541_RS10395 PF02618 YceG-like family AL541_RS10400 PF01063 Amino-transferase class IV AL541_RS10405 PF00109 Beta-ketoacyl synthase, N-terminal domain AL541_RS10405 PF02801 Beta-ketoacyl synthase, C-terminal domain AL541_RS10410 PF00550 Phosphopantetheine attachment site AL541_RS10420 PF00698 Acyl transferase domain AL541_RS10425 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL541_RS10425 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL541_RS10430 PF02504 Fatty acid synthesis protein AL541_RS10435 PF01783 Ribosomal L32p protein family AL541_RS10440 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL541_RS10445 PF02545 Maf-like protein AL541_RS10450 PF01479 S4 domain AL541_RS10450 PF00849 RNA pseudouridylate synthase AL541_RS10460 PF00575 S1 RNA binding domain AL541_RS10460 PF10150 Ribonuclease E/G family AL541_RS10460 PF12111 Polyribonucleotide phosphorylase C terminal AL541_RS10470 PF01740 STAS domain AL541_RS10470 PF00916 Sulfate permease family AL541_RS10475 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL541_RS10480 PF12557 Cob(I)alamin adenosyltransferase N terminal AL541_RS10480 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL541_RS10490 PF00485 Phosphoribulokinase / Uridine kinase family AL541_RS10495 PF10609 NUBPL iron-transfer P-loop NTPase AL541_RS10500 PF01588 Putative tRNA binding domain AL541_RS10500 PF09334 tRNA synthetases class I (M) AL541_RS10520 PF00392 Bacterial regulatory proteins, gntR family AL541_RS10520 PF07840 FadR C-terminal domain AL541_RS10525 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL541_RS10530 PF02600 Disulfide bond formation protein DsbB AL541_RS10535 PF07516 SecA Wing and Scaffold domain AL541_RS10535 PF01043 SecA preprotein cross-linking domain AL541_RS10535 PF07517 SecA DEAD-like domain AL541_RS10535 PF02810 SEC-C motif AL541_RS10540 PF01207 Dihydrouridine synthase (Dus) AL541_RS10545 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS10545 PF17158 Membrane-associated sensor, integral membrane domain AL541_RS10550 PF00128 Alpha amylase, catalytic domain AL541_RS10550 PF02903 Alpha amylase, N-terminal ig-like domain AL541_RS10555 PF00005 ABC transporter AL541_RS10560 PF02653 Branched-chain amino acid transport system / permease component AL541_RS10570 PF04217 Protein of unknown function, DUF412 AL541_RS10575 PF00871 Acetokinase family AL541_RS10580 PF01515 Phosphate acetyl/butaryl transferase AL541_RS10580 PF07085 DRTGG domain AL541_RS10590 PF13409 Glutathione S-transferase, N-terminal domain AL541_RS10595 PF00005 ABC transporter AL541_RS10595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS10600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS10600 PF00005 ABC transporter AL541_RS10605 PF12911 N-terminal TM domain of oligopeptide transport permease C AL541_RS10605 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS10610 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS10615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_RS10620 PF02391 MoaE protein AL541_RS10625 PF02597 ThiS family AL541_RS10630 PF01967 MoaC family AL541_RS10635 PF00994 Probable molybdopterin binding domain AL541_RS10640 PF04055 Radical SAM superfamily AL541_RS10640 PF06463 Molybdenum Cofactor Synthesis C AL541_RS10645 PF01933 Uncharacterised protein family UPF0052 AL541_RS10650 PF01627 Hpt domain AL541_RS10655 PF02954 Bacterial regulatory protein, Fis family AL541_RS10655 PF00158 Sigma-54 interaction domain AL541_RS10655 PF00072 Response regulator receiver domain AL541_RS10660 PF02151 UvrB/uvrC motif AL541_RS10660 PF04851 Type III restriction enzyme, res subunit AL541_RS10660 PF00271 Helicase conserved C-terminal domain AL541_RS10660 PF12344 Ultra-violet resistance protein B AL541_RS10660 PF17757 UvrB interaction domain AL541_RS10670 PF02901 Pyruvate formate lyase-like AL541_RS10670 PF01228 Glycine radical AL541_RS10675 PF02508 Rnf-Nqr subunit, membrane protein AL541_RS10680 PF04060 Putative Fe-S cluster AL541_RS10685 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL541_RS10685 PF13375 RnfC Barrel sandwich hybrid domain AL541_RS10685 PF12838 4Fe-4S dicluster domain AL541_RS10685 PF10531 SLBB domain AL541_RS10690 PF03116 NQR2, RnfD, RnfE family AL541_RS10695 PF04205 FMN-binding domain AL541_RS10700 PF02508 Rnf-Nqr subunit, membrane protein AL541_RS10705 PF00730 HhH-GPD superfamily base excision DNA repair protein AL541_RS10705 PF00633 Helix-hairpin-helix motif AL541_RS10705 PF10576 Iron-sulfur binding domain of endonuclease III AL541_RS10710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_RS10715 PF10952 Protein of unknown function (DUF2753) AL541_RS10720 PF18393 MotY N-terminal domain AL541_RS10720 PF00691 OmpA family AL541_RS10730 PF00929 Exonuclease AL541_RS10735 PF03553 Na+/H+ antiporter family AL541_RS10735 PF13726 Na+-H+ antiporter family AL541_RS10755 PF00462 Glutaredoxin AL541_RS10760 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL541_RS10760 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL541_RS10780 PF00465 Iron-containing alcohol dehydrogenase AL541_RS10780 PF00171 Aldehyde dehydrogenase family AL541_RS10785 PF01914 MarC family integral membrane protein AL541_RS10790 PF00027 Cyclic nucleotide-binding domain AL541_RS10790 PF00520 Ion transport protein AL541_RS10795 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL541_RS10795 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL541_RS10800 PF03553 Na+/H+ antiporter family AL541_RS10815 PF04245 37-kD nucleoid-associated bacterial protein AL541_RS10820 PF07208 Protein of unknown function (DUF1414) AL541_RS10825 PF00884 Sulfatase AL541_RS10825 PF11893 Domain of unknown function (DUF3413) AL541_RS10835 PF00850 Histone deacetylase domain AL541_RS10840 PF00106 short chain dehydrogenase AL541_RS10850 PF01131 DNA topoisomerase AL541_RS10850 PF01751 Toprim domain AL541_RS10855 PF00881 Nitroreductase family AL541_RS10865 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS10865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL541_RS10870 PF01343 Peptidase family S49 AL541_RS10875 PF00710 Asparaginase, N-terminal AL541_RS10875 PF17763 Glutaminase/Asparaginase C-terminal domain AL541_RS10880 PF07023 Protein of unknown function (DUF1315) AL541_RS10890 PF01641 SelR domain AL541_RS10895 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_RS10895 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL541_RS10900 PF01263 Aldose 1-epimerase AL541_RS10905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS10905 PF08447 PAS fold AL541_RS10905 PF13426 PAS domain AL541_RS10910 PF13847 Methyltransferase domain AL541_RS10930 PF00245 Alkaline phosphatase AL541_RS10940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_RS10945 PF03992 Antibiotic biosynthesis monooxygenase AL541_RS10950 PF05552 Conserved TM helix AL541_RS10950 PF00924 Mechanosensitive ion channel AL541_RS10955 PF03692 Putative zinc- or iron-chelating domain AL541_RS10960 PF04226 Transglycosylase associated protein AL541_RS10965 PF03692 Putative zinc- or iron-chelating domain AL541_RS10970 PF00230 Major intrinsic protein AL541_RS10975 PF13662 Toprim domain AL541_RS10975 PF02132 RecR protein AL541_RS10980 PF02575 YbaB/EbfC DNA-binding family AL541_RS10985 PF12170 DNA polymerase III tau subunit V interacting with alpha AL541_RS10985 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AL541_RS10985 PF12169 DNA polymerase III subunits gamma and tau domain III AL541_RS10990 PF00156 Phosphoribosyl transferase domain AL541_RS10995 PF04304 Protein of unknown function (DUF454) AL541_RS11005 PF00072 Response regulator receiver domain AL541_RS11010 PF03466 LysR substrate binding domain AL541_RS11010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS11015 PF00156 Phosphoribosyl transferase domain AL541_RS11020 PF02674 Colicin V production protein AL541_RS11025 PF05036 Sporulation related domain AL541_RS11030 PF08245 Mur ligase middle domain AL541_RS11030 PF02875 Mur ligase family, glutamate ligase domain AL541_RS11035 PF01039 Carboxyl transferase domain AL541_RS11035 PF17848 Acetyl-coA carboxylase zinc finger domain AL541_RS11045 PF01416 tRNA pseudouridine synthase AL541_RS11055 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL541_RS11055 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL541_RS11060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL541_RS11060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL541_RS11060 PF11890 Domain of unknown function (DUF3410) AL541_RS11070 PF02801 Beta-ketoacyl synthase, C-terminal domain AL541_RS11070 PF00109 Beta-ketoacyl synthase, N-terminal domain AL541_RS11075 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL541_RS11075 PF01266 FAD dependent oxidoreductase AL541_RS11080 PF03358 NADPH-dependent FMN reductase AL541_RS11090 PF08891 YfcL protein AL541_RS11095 PF04315 Elongation factor P hydroxylase AL541_RS11105 PF03458 UPF0126 domain AL541_RS11110 PF01264 Chorismate synthase AL541_RS11115 PF05175 Methyltransferase small domain AL541_RS11120 PF01713 Smr domain AL541_RS11125 PF00300 Histidine phosphatase superfamily (branch 1) AL541_RS11130 PF00675 Insulinase (Peptidase family M16) AL541_RS11130 PF05193 Peptidase M16 inactive domain AL541_RS11130 PF16187 Middle or third domain of peptidase_M16 AL541_RS11140 PF00378 Enoyl-CoA hydratase/isomerase AL541_RS11140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL541_RS11140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL541_RS11145 PF02803 Thiolase, C-terminal domain AL541_RS11145 PF00108 Thiolase, N-terminal domain AL541_RS11155 PF04542 Sigma-70 region 2 AL541_RS11155 PF08281 Sigma-70, region 4 AL541_RS11165 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL541_RS11170 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL541_RS11175 PF04333 MlaA lipoprotein AL541_RS11180 PF03918 Cytochrome C biogenesis protein AL541_RS11185 PF03918 Cytochrome C biogenesis protein AL541_RS11190 PF08534 Redoxin AL541_RS11195 PF01578 Cytochrome C assembly protein AL541_RS11195 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL541_RS11200 PF03100 CcmE AL541_RS11205 PF04995 Heme exporter protein D (CcmD) AL541_RS11210 PF01578 Cytochrome C assembly protein AL541_RS11215 PF03379 CcmB protein AL541_RS11220 PF00005 ABC transporter AL541_RS11230 PF01584 CheW-like domain AL541_RS11240 PF13614 AAA domain AL541_RS11245 PF01339 CheB methylesterase AL541_RS11245 PF00072 Response regulator receiver domain AL541_RS11250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS11250 PF01627 Hpt domain AL541_RS11250 PF01584 CheW-like domain AL541_RS11250 PF00072 Response regulator receiver domain AL541_RS11250 PF02895 Signal transducing histidine kinase, homodimeric domain AL541_RS11255 PF04344 Chemotaxis phosphatase, CheZ AL541_RS11260 PF00072 Response regulator receiver domain AL541_RS11265 PF04545 Sigma-70, region 4 AL541_RS11265 PF04542 Sigma-70 region 2 AL541_RS11265 PF04539 Sigma-70 region 3 AL541_RS11270 PF10609 NUBPL iron-transfer P-loop NTPase AL541_RS11275 PF00448 SRP54-type protein, GTPase domain AL541_RS11280 PF00771 FHIPEP family AL541_RS11285 PF01312 FlhB HrpN YscU SpaS Family AL541_RS11290 PF01311 Bacterial export proteins, family 1 AL541_RS11295 PF01313 Bacterial export proteins, family 3 AL541_RS11300 PF00813 FliP family AL541_RS11305 PF04347 Flagellar biosynthesis protein, FliO AL541_RS11310 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL541_RS11315 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL541_RS11315 PF02154 Flagellar motor switch protein FliM AL541_RS11340 PF18269 T3SS EscN ATPase C-terminal domain AL541_RS11340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL541_RS11350 PF14842 FliG N-terminal domain AL541_RS11350 PF14841 FliG middle domain AL541_RS11350 PF01706 FliG C-terminal domain AL541_RS11355 PF08345 Flagellar M-ring protein C-terminal AL541_RS11355 PF01514 Secretory protein of YscJ/FliF family AL541_RS11360 PF02049 Flagellar hook-basal body complex protein FliE AL541_RS11365 PF00072 Response regulator receiver domain AL541_RS11365 PF00158 Sigma-54 interaction domain AL541_RS11365 PF02954 Bacterial regulatory protein, Fis family AL541_RS11370 PF13188 PAS domain AL541_RS11370 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS11370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS11375 PF02954 Bacterial regulatory protein, Fis family AL541_RS11375 PF06490 Flagellar regulatory protein FleQ AL541_RS11375 PF00158 Sigma-54 interaction domain AL541_RS11380 PF02561 Flagellar protein FliS AL541_RS11390 PF07195 Flagellar hook-associated protein 2 C-terminus AL541_RS11390 PF07196 Flagellin hook IN motif AL541_RS11390 PF02465 Flagellar hook-associated protein 2 N-terminus AL541_RS11395 PF03646 FlaG protein AL541_RS11400 PF07196 Flagellin hook IN motif AL541_RS11400 PF00700 Bacterial flagellin C-terminal helical region AL541_RS11400 PF00669 Bacterial flagellin N-terminal helical region AL541_RS11405 PF00669 Bacterial flagellin N-terminal helical region AL541_RS11405 PF00700 Bacterial flagellin C-terminal helical region AL541_RS11405 PF07196 Flagellin hook IN motif AL541_RS11415 PF00669 Bacterial flagellin N-terminal helical region AL541_RS11415 PF07196 Flagellin hook IN motif AL541_RS11415 PF00700 Bacterial flagellin C-terminal helical region AL541_RS11420 PF04261 Dyp-type peroxidase family AL541_RS11425 PF11143 Protein of unknown function (DUF2919) AL541_RS11445 PF03960 ArsC family AL541_RS11450 PF07687 Peptidase dimerisation domain AL541_RS11450 PF01546 Peptidase family M20/M25/M40 AL541_RS11465 PF06804 NlpB/DapX lipoprotein AL541_RS11470 PF00701 Dihydrodipicolinate synthetase family AL541_RS11480 PF00578 AhpC/TSA family AL541_RS11485 PF01594 AI-2E family transporter AL541_RS11495 PF01435 Peptidase family M48 AL541_RS11495 PF13181 Tetratricopeptide repeat AL541_RS11500 PF03960 ArsC family AL541_RS11505 PF03358 NADPH-dependent FMN reductase AL541_RS11520 PF00860 Permease family AL541_RS11530 PF02769 AIR synthase related protein, C-terminal domain AL541_RS11530 PF00586 AIR synthase related protein, N-terminal domain AL541_RS11535 PF00551 Formyl transferase AL541_RS11540 PF13230 Glutamine amidotransferases class-II AL541_RS11545 PF13580 SIS domain AL541_RS11550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL541_RS11550 PF02770 Acyl-CoA dehydrogenase, middle domain AL541_RS11550 PF09317 Domain of unknown function (DUF1974) AL541_RS11550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL541_RS11555 PF01740 STAS domain AL541_RS11555 PF00916 Sulfate permease family AL541_RS11580 PF00929 Exonuclease AL541_RS11585 PF00075 RNase H AL541_RS11590 PF08241 Methyltransferase domain AL541_RS11595 PF00753 Metallo-beta-lactamase superfamily AL541_RS11595 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL541_RS11600 PF01464 Transglycosylase SLT domain AL541_RS11600 PF01476 LysM domain AL541_RS11610 PF03372 Endonuclease/Exonuclease/phosphatase family AL541_RS11615 PF00543 Nitrogen regulatory protein P-II AL541_RS11620 PF00034 Cytochrome c AL541_RS11625 PF09179 TilS substrate binding domain AL541_RS11625 PF11734 TilS substrate C-terminal domain AL541_RS11625 PF01171 PP-loop family AL541_RS11630 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL541_RS11635 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL541_RS11635 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL541_RS11635 PF01336 OB-fold nucleic acid binding domain AL541_RS11635 PF14579 Helix-hairpin-helix motif AL541_RS11635 PF02811 PHP domain AL541_RS11640 PF01351 Ribonuclease HII AL541_RS11645 PF02684 Lipid-A-disaccharide synthetase AL541_RS11650 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL541_RS11650 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_RS11655 PF07977 FabA-like domain AL541_RS11660 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL541_RS11660 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_RS11665 PF03938 Outer membrane protein (OmpH-like) AL541_RS11670 PF01103 Surface antigen AL541_RS11670 PF07244 Surface antigen variable number repeat AL541_RS11675 PF17820 PDZ domain AL541_RS11675 PF02163 Peptidase family M50 AL541_RS11680 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL541_RS11680 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL541_RS11680 PF13288 DXP reductoisomerase C-terminal domain AL541_RS11690 PF01255 Putative undecaprenyl diphosphate synthase AL541_RS11695 PF01765 Ribosome recycling factor AL541_RS11700 PF00696 Amino acid kinase family AL541_RS11705 PF00889 Elongation factor TS AL541_RS11710 PF00318 Ribosomal protein S2 AL541_RS11715 PF00557 Metallopeptidase family M24 AL541_RS11720 PF01842 ACT domain AL541_RS11720 PF08335 GlnD PII-uridylyltransferase AL541_RS11720 PF01966 HD domain AL541_RS11720 PF01909 Nucleotidyltransferase domain AL541_RS11725 PF11944 Protein of unknown function (DUF3461) AL541_RS11730 PF00849 RNA pseudouridylate synthase AL541_RS11735 PF04287 tRNA pseudouridine synthase C AL541_RS11765 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL541_RS11770 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL541_RS11770 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL541_RS11775 PF01370 NAD dependent epimerase/dehydratase family AL541_RS11800 PF03806 AbgT putative transporter family AL541_RS11805 PF00444 Ribosomal protein L36 AL541_RS11810 PF01197 Ribosomal protein L31 AL541_RS11815 PF01980 tRNA-methyltransferase O AL541_RS11815 PF18389 TrmO C-terminal domain AL541_RS11820 PF03129 Anticodon binding domain AL541_RS11820 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL541_RS11820 PF04073 Aminoacyl-tRNA editing domain AL541_RS11830 PF06786 Uncharacterised protein family (UPF0253) AL541_RS11840 PF00209 Sodium:neurotransmitter symporter family AL541_RS11845 PF06483 Chitinase C AL541_RS11845 PF00704 Glycosyl hydrolases family 18 AL541_RS11855 PF01272 Transcription elongation factor, GreA/GreB, C-term AL541_RS11855 PF03449 Transcription elongation factor, N-terminal AL541_RS11860 PF00270 DEAD/DEAH box helicase AL541_RS11860 PF09382 RQC domain AL541_RS11860 PF00570 HRDC domain AL541_RS11860 PF00271 Helicase conserved C-terminal domain AL541_RS11860 PF16124 RecQ zinc-binding AL541_RS11865 PF11798 IMS family HHH motif AL541_RS11865 PF00817 impB/mucB/samB family AL541_RS11865 PF11799 impB/mucB/samB family C-terminal domain AL541_RS11875 PF00072 Response regulator receiver domain AL541_RS11875 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS11885 PF02424 ApbE family AL541_RS11890 PF00111 2Fe-2S iron-sulfur cluster binding domain AL541_RS11890 PF00175 Oxidoreductase NAD-binding domain AL541_RS11890 PF00970 Oxidoreductase FAD-binding domain AL541_RS11895 PF02508 Rnf-Nqr subunit, membrane protein AL541_RS11900 PF02508 Rnf-Nqr subunit, membrane protein AL541_RS11905 PF04205 FMN-binding domain AL541_RS11910 PF03116 NQR2, RnfD, RnfE family AL541_RS11915 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL541_RS11915 PF11973 NQRA C-terminal domain AL541_RS11925 PF01722 BolA-like protein AL541_RS11930 PF05175 Methyltransferase small domain AL541_RS11935 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL541_RS11935 PF03923 Uncharacterized lipoprotein AL541_RS11940 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL541_RS11945 PF07690 Major Facilitator Superfamily AL541_RS11955 PF04542 Sigma-70 region 2 AL541_RS11955 PF04545 Sigma-70, region 4 AL541_RS11975 PF03502 Nucleoside-specific channel-forming protein, Tsx AL541_RS11980 PF02558 Ketopantoate reductase PanE/ApbA AL541_RS11980 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL541_RS11985 PF01965 DJ-1/PfpI family AL541_RS11990 PF00266 Aminotransferase class-V AL541_RS11995 PF17158 Membrane-associated sensor, integral membrane domain AL541_RS11995 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS12000 PF02657 Fe-S metabolism associated domain AL541_RS12005 PF00899 ThiF family AL541_RS12010 PF06725 3D domain AL541_RS12010 PF03562 MltA specific insert domain AL541_RS12025 PF00696 Amino acid kinase family AL541_RS12025 PF00583 Acetyltransferase (GNAT) family AL541_RS12045 PF13538 UvrD-like helicase C-terminal domain AL541_RS12050 PF12705 PD-(D/E)XK nuclease superfamily AL541_RS12050 PF00580 UvrD/REP helicase N-terminal domain AL541_RS12050 PF13361 UvrD-like helicase C-terminal domain AL541_RS12060 PF17946 RecC C-terminal domain AL541_RS12065 PF11893 Domain of unknown function (DUF3413) AL541_RS12065 PF00884 Sulfatase AL541_RS12075 PF03466 LysR substrate binding domain AL541_RS12075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS12080 PF07130 YebG protein AL541_RS12095 PF14602 Hexapeptide repeat of succinyl-transferase AL541_RS12095 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL541_RS12100 PF03009 Glycerophosphoryl diester phosphodiesterase family AL541_RS12105 PF07690 Major Facilitator Superfamily AL541_RS12115 PF00230 Major intrinsic protein AL541_RS12120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL541_RS12120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL541_RS12125 PF08220 DeoR-like helix-turn-helix domain AL541_RS12125 PF00455 DeoR C terminal sensor domain AL541_RS12130 PF01266 FAD dependent oxidoreductase AL541_RS12130 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL541_RS12135 PF01544 CorA-like Mg2+ transporter protein AL541_RS12155 PF00356 Bacterial regulatory proteins, lacI family AL541_RS12160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS12160 PF03466 LysR substrate binding domain AL541_RS12170 PF00196 Bacterial regulatory proteins, luxR family AL541_RS12200 PF00501 AMP-binding enzyme AL541_RS12210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS12210 PF03466 LysR substrate binding domain AL541_RS12215 PF14492 Elongation Factor G, domain II AL541_RS12215 PF03144 Elongation factor Tu domain 2 AL541_RS12215 PF00009 Elongation factor Tu GTP binding domain AL541_RS12215 PF03764 Elongation factor G, domain IV AL541_RS12215 PF00679 Elongation factor G C-terminus AL541_RS12220 PF18073 Rubredoxin metal binding domain AL541_RS12230 PF18429 Domain of unknown function (DUF5609) AL541_RS12240 PF01048 Phosphorylase superfamily AL541_RS12245 PF01676 Metalloenzyme superfamily AL541_RS12250 PF02885 Glycosyl transferase family, helical bundle domain AL541_RS12250 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL541_RS12250 PF00591 Glycosyl transferase family, a/b domain AL541_RS12255 PF01791 DeoC/LacD family aldolase AL541_RS12260 PF01773 Na+ dependent nucleoside transporter N-terminus AL541_RS12260 PF07662 Na+ dependent nucleoside transporter C-terminus AL541_RS12260 PF07670 Nucleoside recognition AL541_RS12265 PF01026 TatD related DNase AL541_RS12275 PF03144 Elongation factor Tu domain 2 AL541_RS12275 PF16658 Class II release factor RF3, C-terminal domain AL541_RS12275 PF00009 Elongation factor Tu GTP binding domain AL541_RS12295 PF13508 Acetyltransferase (GNAT) domain AL541_RS12300 PF02036 SCP-2 sterol transfer family AL541_RS12310 PF03707 Bacterial signalling protein N terminal repeat AL541_RS12310 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS12310 PF00563 EAL domain AL541_RS12315 PF01136 Peptidase family U32 AL541_RS12320 PF01136 Peptidase family U32 AL541_RS12325 PF01554 MatE AL541_RS12335 PF07719 Tetratricopeptide repeat AL541_RS12335 PF13181 Tetratricopeptide repeat AL541_RS12340 PF00013 KH domain AL541_RS12340 PF01138 3' exoribonuclease family, domain 1 AL541_RS12340 PF00575 S1 RNA binding domain AL541_RS12340 PF03725 3' exoribonuclease family, domain 2 AL541_RS12340 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL541_RS12345 PF00312 Ribosomal protein S15 AL541_RS12350 PF09157 Pseudouridine synthase II TruB, C-terminal AL541_RS12350 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL541_RS12350 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL541_RS12355 PF02033 Ribosome-binding factor A AL541_RS12360 PF08364 Bacterial translation initiation factor IF-2 associated region AL541_RS12360 PF00009 Elongation factor Tu GTP binding domain AL541_RS12360 PF04760 Translation initiation factor IF-2, N-terminal region AL541_RS12360 PF11987 Translation-initiation factor 2 AL541_RS12365 PF00575 S1 RNA binding domain AL541_RS12365 PF13184 NusA-like KH domain AL541_RS12365 PF08529 NusA N-terminal domain AL541_RS12370 PF17384 RimP C-terminal SH3 domain AL541_RS12370 PF02576 RimP N-terminal domain AL541_RS12385 PF03840 Preprotein translocase SecG subunit AL541_RS12395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL541_RS12395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL541_RS12395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL541_RS12395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL541_RS12400 PF00809 Pterin binding enzyme AL541_RS12405 PF17862 AAA+ lid domain AL541_RS12405 PF01434 Peptidase family M41 AL541_RS12405 PF06480 FtsH Extracellular AL541_RS12405 PF00004 ATPase family associated with various cellular activities (AAA) AL541_RS12410 PF01728 FtsJ-like methyltransferase AL541_RS12415 PF01985 CRS1 / YhbY (CRM) domain AL541_RS12420 PF03449 Transcription elongation factor, N-terminal AL541_RS12420 PF01272 Transcription elongation factor, GreA/GreB, C-term AL541_RS12425 PF13609 Gram-negative porin AL541_RS12430 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL541_RS12440 PF00579 tRNA synthetases class I (W and Y) AL541_RS12445 PF01476 LysM domain AL541_RS12445 PF08525 Opacity-associated protein A N-terminal motif AL541_RS12445 PF01551 Peptidase family M23 AL541_RS12450 PF00873 AcrB/AcrD/AcrF family AL541_RS12460 PF01521 Iron-sulphur cluster biosynthesis AL541_RS12465 PF00202 Aminotransferase class-III AL541_RS12470 PF01594 AI-2E family transporter AL541_RS12475 PF08468 Methyltransferase small domain N-terminal AL541_RS12475 PF05175 Methyltransferase small domain AL541_RS12480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS12480 PF09308 LuxQ, periplasmic AL541_RS12480 PF00072 Response regulator receiver domain AL541_RS12480 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS12485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_RS12490 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS12495 PF12911 N-terminal TM domain of oligopeptide transport permease C AL541_RS12495 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS12500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS12500 PF00005 ABC transporter AL541_RS12505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS12505 PF00005 ABC transporter AL541_RS12515 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL541_RS12520 PF02838 Glycosyl hydrolase family 20, domain 2 AL541_RS12520 PF00728 Glycosyl hydrolase family 20, catalytic domain AL541_RS12525 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL541_RS12525 PF06165 Glycosyltransferase family 36 AL541_RS12530 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL541_RS12530 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL541_RS12530 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL541_RS12530 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL541_RS12535 PF08402 TOBE domain AL541_RS12535 PF00005 ABC transporter AL541_RS12545 PF13416 Bacterial extracellular solute-binding protein AL541_RS12550 PF00909 Ammonium Transporter Family AL541_RS12555 PF00543 Nitrogen regulatory protein P-II AL541_RS12560 PF06062 Uncharacterised protein family (UPF0231) AL541_RS12565 PF06434 Aconitate hydratase 2 N-terminus AL541_RS12565 PF11791 Aconitate B N-terminal domain AL541_RS12565 PF00330 Aconitase family (aconitate hydratase) AL541_RS12570 PF01734 Patatin-like phospholipase AL541_RS12575 PF14814 Bifunctional transglycosylase second domain AL541_RS12575 PF00905 Penicillin binding protein transpeptidase domain AL541_RS12575 PF00912 Transglycosylase AL541_RS12580 PF00270 DEAD/DEAH box helicase AL541_RS12580 PF04408 Helicase associated domain (HA2) AL541_RS12580 PF00271 Helicase conserved C-terminal domain AL541_RS12580 PF08482 ATP-dependent helicase C-terminal AL541_RS12585 PF17746 SfsA N-terminal OB domain AL541_RS12585 PF03749 Sugar fermentation stimulation protein RE domain AL541_RS12590 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL541_RS12595 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL541_RS12600 PF01743 Poly A polymerase head domain AL541_RS12600 PF12627 Probable RNA and SrmB- binding site of polymerase A AL541_RS12600 PF12626 Polymerase A arginine-rich C-terminus AL541_RS12605 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL541_RS12610 PF02548 Ketopantoate hydroxymethyltransferase AL541_RS12615 PF02569 Pantoate-beta-alanine ligase AL541_RS12620 PF03279 Bacterial lipid A biosynthesis acyltransferase AL541_RS12630 PF01061 ABC-2 type transporter AL541_RS12635 PF00005 ABC transporter AL541_RS12640 PF01740 STAS domain AL541_RS12640 PF00916 Sulfate permease family AL541_RS12645 PF00484 Carbonic anhydrase AL541_RS12650 PF00156 Phosphoribosyl transferase domain AL541_RS12655 PF00440 Bacterial regulatory proteins, tetR family AL541_RS12660 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS12660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL541_RS12665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL541_RS12665 PF00364 Biotin-requiring enzyme AL541_RS12665 PF02817 e3 binding domain AL541_RS12670 PF17831 Pyruvate dehydrogenase E1 component middle domain AL541_RS12670 PF00456 Transketolase, thiamine diphosphate binding domain AL541_RS12675 PF00392 Bacterial regulatory proteins, gntR family AL541_RS12675 PF07729 FCD domain AL541_RS12680 PF01510 N-acetylmuramoyl-L-alanine amidase AL541_RS12685 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL541_RS12685 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL541_RS12690 PF07963 Prokaryotic N-terminal methylation motif AL541_RS12690 PF00114 Pilin (bacterial filament) AL541_RS12695 PF00437 Type II/IV secretion system protein AL541_RS12695 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL541_RS12700 PF00482 Type II secretion system (T2SS), protein F AL541_RS12705 PF06750 Bacterial Peptidase A24 N-terminal domain AL541_RS12705 PF01478 Type IV leader peptidase family AL541_RS12710 PF01121 Dephospho-CoA kinase AL541_RS12715 PF07072 Cell division protein AL541_RS12720 PF03884 DNA gyrase inhibitor YacG AL541_RS12725 PF01245 Ribosomal protein L19 AL541_RS12730 PF01746 tRNA (Guanine-1)-methyltransferase AL541_RS12735 PF01782 RimM N-terminal domain AL541_RS12735 PF05239 PRC-barrel domain AL541_RS12740 PF00886 Ribosomal protein S16 AL541_RS12745 PF00448 SRP54-type protein, GTPase domain AL541_RS12745 PF02978 Signal peptide binding domain AL541_RS12745 PF02881 SRP54-type protein, helical bundle domain AL541_RS12750 PF01578 Cytochrome C assembly protein AL541_RS12755 PF03471 Transporter associated domain AL541_RS12755 PF00571 CBS domain AL541_RS12755 PF01595 Cyclin M transmembrane N-terminal domain AL541_RS12760 PF02664 S-Ribosylhomocysteinase (LuxS) AL541_RS12770 PF04262 Glutamate-cysteine ligase AL541_RS12775 PF05193 Peptidase M16 inactive domain AL541_RS12775 PF00675 Insulinase (Peptidase family M16) AL541_RS12780 PF09335 SNARE associated Golgi protein AL541_RS12785 PF00107 Zinc-binding dehydrogenase AL541_RS12785 PF08240 Alcohol dehydrogenase GroES-like domain AL541_RS12790 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL541_RS12795 PF00364 Biotin-requiring enzyme AL541_RS12795 PF00682 HMGL-like AL541_RS12795 PF02436 Conserved carboxylase domain AL541_RS12800 PF04277 Oxaloacetate decarboxylase, gamma chain AL541_RS12855 PF02599 Global regulator protein family AL541_RS12860 PF13840 ACT domain AL541_RS12860 PF01842 ACT domain AL541_RS12860 PF00696 Amino acid kinase family AL541_RS12865 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL541_RS12865 PF01411 tRNA synthetases class II (A) AL541_RS12865 PF02272 DHHA1 domain AL541_RS12870 PF02631 RecX family AL541_RS12875 PF00154 recA bacterial DNA recombination protein AL541_RS12880 PF02464 Competence-damaged protein AL541_RS12885 PF05190 MutS family domain IV AL541_RS12885 PF05192 MutS domain III AL541_RS12885 PF05188 MutS domain II AL541_RS12885 PF00488 MutS domain V AL541_RS12885 PF01624 MutS domain I AL541_RS12890 PF04542 Sigma-70 region 2 AL541_RS12890 PF00140 Sigma-70 factor, region 1.2 AL541_RS12890 PF04539 Sigma-70 region 3 AL541_RS12890 PF04545 Sigma-70, region 4 AL541_RS12895 PF01476 LysM domain AL541_RS12895 PF01551 Peptidase family M23 AL541_RS12905 PF01975 Survival protein SurE AL541_RS12910 PF01142 tRNA pseudouridine synthase D (TruD) AL541_RS12915 PF02542 YgbB family AL541_RS12920 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL541_RS12925 PF04977 Septum formation initiator AL541_RS12930 PF00113 Enolase, C-terminal TIM barrel domain AL541_RS12930 PF03952 Enolase, N-terminal domain AL541_RS12935 PF06418 CTP synthase N-terminus AL541_RS12935 PF00117 Glutamine amidotransferase class-I AL541_RS12940 PF03819 MazG nucleotide pyrophosphohydrolase domain AL541_RS12945 PF04607 Region found in RelA / SpoT proteins AL541_RS12945 PF02824 TGS domain AL541_RS12945 PF13291 ACT domain AL541_RS12955 PF05958 tRNA (Uracil-5-)-methyltransferase AL541_RS12955 PF01938 TRAM domain AL541_RS12965 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS12965 PF00072 Response regulator receiver domain AL541_RS12965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS12965 PF00672 HAMP domain AL541_RS12965 PF01627 Hpt domain AL541_RS12965 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL541_RS12970 PF01648 4'-phosphopantetheinyl transferase superfamily AL541_RS12975 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL541_RS12980 PF02565 Recombination protein O C terminal AL541_RS12980 PF11967 Recombination protein O N terminal AL541_RS12985 PF07650 KH domain AL541_RS12985 PF01926 50S ribosome-binding GTPase AL541_RS12990 PF00035 Double-stranded RNA binding motif AL541_RS12990 PF14622 Ribonuclease-III-like AL541_RS12995 PF10502 Signal peptidase, peptidase S26 AL541_RS13000 PF06421 GTP-binding protein LepA C-terminus AL541_RS13000 PF03144 Elongation factor Tu domain 2 AL541_RS13000 PF00009 Elongation factor Tu GTP binding domain AL541_RS13000 PF00679 Elongation factor G C-terminus AL541_RS13010 PF17188 MucB/RseB C-terminal domain AL541_RS13010 PF03888 MucB/RseB N-terminal domain AL541_RS13015 PF03872 Anti sigma-E protein RseA, N-terminal domain AL541_RS13015 PF03873 Anti sigma-E protein RseA, C-terminal domain AL541_RS13020 PF08281 Sigma-70, region 4 AL541_RS13020 PF04542 Sigma-70 region 2 AL541_RS13030 PF02910 Fumarate reductase flavoprotein C-term AL541_RS13030 PF00890 FAD binding domain AL541_RS13040 PF03937 Flavinator of succinate dehydrogenase AL541_RS13045 PF01571 Aminomethyltransferase folate-binding domain AL541_RS13060 PF01494 FAD binding domain AL541_RS13065 PF01494 FAD binding domain AL541_RS13070 PF03695 Uncharacterised protein family (UPF0149) AL541_RS13080 PF05164 Cell division protein ZapA AL541_RS13090 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL541_RS13095 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL541_RS13100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL541_RS13100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL541_RS13100 PF01842 ACT domain AL541_RS13105 PF04402 Protein of unknown function (DUF541) AL541_RS13110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS13110 PF03466 LysR substrate binding domain AL541_RS13115 PF01810 LysE type translocator AL541_RS13125 PF00924 Mechanosensitive ion channel AL541_RS13125 PF05552 Conserved TM helix AL541_RS13130 PF01116 Fructose-bisphosphate aldolase class-II AL541_RS13135 PF00162 Phosphoglycerate kinase AL541_RS13140 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL541_RS13140 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_RS13145 PF00593 TonB dependent receptor AL541_RS13145 PF07715 TonB-dependent Receptor Plug Domain AL541_RS13150 PF03466 LysR substrate binding domain AL541_RS13150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS13155 PF00456 Transketolase, thiamine diphosphate binding domain AL541_RS13155 PF02779 Transketolase, pyrimidine binding domain AL541_RS13155 PF02780 Transketolase, C-terminal domain AL541_RS13165 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL541_RS13165 PF02772 S-adenosylmethionine synthetase, central domain AL541_RS13165 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL541_RS13175 PF10263 SprT-like family AL541_RS13175 PF17283 SprT-like zinc ribbon domain AL541_RS13180 PF04231 Endonuclease I AL541_RS13185 PF04452 RNA methyltransferase AL541_RS13190 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL541_RS13190 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL541_RS13195 PF02622 Uncharacterized ACR, COG1678 AL541_RS13200 PF03652 Holliday junction resolvase AL541_RS13205 PF00437 Type II/IV secretion system protein AL541_RS13210 PF00437 Type II/IV secretion system protein AL541_RS13215 PF01168 Alanine racemase, N-terminal domain AL541_RS13220 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL541_RS13220 PF03807 NADP oxidoreductase coenzyme F420-dependent AL541_RS13225 PF02325 YGGT family AL541_RS13230 PF02594 Uncharacterised ACR, YggU family COG1872 AL541_RS13240 PF01725 Ham1 family AL541_RS13245 PF04055 Radical SAM superfamily AL541_RS13245 PF06969 HemN C-terminal domain AL541_RS13250 PF04960 Glutaminase AL541_RS13255 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL541_RS13260 PF02390 Putative methyltransferase AL541_RS13265 PF14815 NUDIX domain AL541_RS13265 PF00730 HhH-GPD superfamily base excision DNA repair protein AL541_RS13265 PF00633 Helix-hairpin-helix motif AL541_RS13270 PF04362 Bacterial Fe(2+) trafficking AL541_RS13275 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL541_RS13275 PF01464 Transglycosylase SLT domain AL541_RS13315 PF17200 Single Cache domain 2 AL541_RS13315 PF00672 HAMP domain AL541_RS13315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS13350 PF00171 Aldehyde dehydrogenase family AL541_RS13400 PF00356 Bacterial regulatory proteins, lacI family AL541_RS13405 PF04794 YdjC-like protein AL541_RS13410 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL541_RS13410 PF02056 Family 4 glycosyl hydrolase AL541_RS13415 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL541_RS13420 PF02378 Phosphotransferase system, EIIC AL541_RS13425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL541_RS13430 PF01522 Polysaccharide deacetylase AL541_RS13530 PF10011 Predicted membrane protein (DUF2254) AL541_RS13540 PF03739 Lipopolysaccharide export system permease LptF/LptG AL541_RS13545 PF03739 Lipopolysaccharide export system permease LptF/LptG AL541_RS13550 PF02789 Cytosol aminopeptidase family, N-terminal domain AL541_RS13550 PF00883 Cytosol aminopeptidase family, catalytic domain AL541_RS13555 PF04364 DNA polymerase III chi subunit, HolC AL541_RS13560 PF10458 Valyl tRNA synthetase tRNA binding arm AL541_RS13560 PF00133 tRNA synthetases class I (I, L, M and V) AL541_RS13560 PF08264 Anticodon-binding domain of tRNA AL541_RS13570 PF00583 Acetyltransferase (GNAT) family AL541_RS13580 PF06877 Regulator of ribonuclease activity B AL541_RS13590 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL541_RS13590 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL541_RS13600 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL541_RS13600 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL541_RS13605 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL541_RS13605 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL541_RS13610 PF01042 Endoribonuclease L-PSP AL541_RS13615 PF01553 Acyltransferase AL541_RS13620 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL541_RS13625 PF01722 BolA-like protein AL541_RS13635 PF05494 MlaC protein AL541_RS13640 PF02470 MlaD protein AL541_RS13645 PF02405 Permease MlaE AL541_RS13650 PF00005 ABC transporter AL541_RS13655 PF01699 Sodium/calcium exchanger protein AL541_RS13660 PF00571 CBS domain AL541_RS13660 PF01380 SIS domain AL541_RS13670 PF03968 OstA-like protein AL541_RS13675 PF00005 ABC transporter AL541_RS13675 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL541_RS13680 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL541_RS13680 PF04552 Sigma-54, DNA binding domain AL541_RS13680 PF04963 Sigma-54 factor, core binding domain AL541_RS13685 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL541_RS13690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL541_RS13695 PF03668 P-loop ATPase protein family AL541_RS13700 PF00381 PTS HPr component phosphorylation site AL541_RS13705 PF03448 MgtE intracellular N domain AL541_RS13705 PF01769 Divalent cation transporter AL541_RS13705 PF00571 CBS domain AL541_RS13710 PF01523 Putative modulator of DNA gyrase AL541_RS13715 PF04751 Protein of unknown function (DUF615) AL541_RS13720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL541_RS13720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL541_RS13725 PF00849 RNA pseudouridylate synthase AL541_RS13735 PF00271 Helicase conserved C-terminal domain AL541_RS13735 PF18339 RapA N-terminal Tudor like domain 1 AL541_RS13735 PF18337 RapA N-terminal Tudor like domain AL541_RS13735 PF12137 RNA polymerase recycling family C-terminal AL541_RS13735 PF00176 SNF2 family N-terminal domain AL541_RS13740 PF02562 PhoH-like protein AL541_RS13740 PF13638 PIN domain AL541_RS13745 PF01523 Putative modulator of DNA gyrase AL541_RS13750 PF00795 Carbon-nitrogen hydrolase AL541_RS13755 PF13502 AsmA-like C-terminal region AL541_RS13755 PF13116 Protein of unknown function AL541_RS13760 PF10150 Ribonuclease E/G family AL541_RS13760 PF00575 S1 RNA binding domain AL541_RS13765 PF02545 Maf-like protein AL541_RS13770 PF04093 rod shape-determining protein MreD AL541_RS13775 PF04085 rod shape-determining protein MreC AL541_RS13815 PF07963 Prokaryotic N-terminal methylation motif AL541_RS13825 PF00482 Type II secretion system (T2SS), protein F AL541_RS13830 PF00437 Type II/IV secretion system protein AL541_RS13830 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL541_RS13840 PF13401 AAA domain AL541_RS13840 PF01471 Putative peptidoglycan binding domain AL541_RS13845 PF00263 Bacterial type II and III secretion system protein AL541_RS13845 PF03958 Bacterial type II/III secretion system short domain AL541_RS13865 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS13865 PF00563 EAL domain AL541_RS13865 PF17157 Gammaproteobacterial periplasmic sensor domain AL541_RS13870 PF00436 Single-strand binding protein family AL541_RS13875 PF00196 Bacterial regulatory proteins, luxR family AL541_RS13880 PF00483 Nucleotidyl transferase AL541_RS13885 PF17760 UvrA interaction domain AL541_RS13885 PF00005 ABC transporter AL541_RS13885 PF17755 UvrA DNA-binding domain AL541_RS13895 PF00266 Aminotransferase class-V AL541_RS13905 PF00696 Amino acid kinase family AL541_RS13905 PF01842 ACT domain AL541_RS13910 PF02607 B12 binding domain AL541_RS13910 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL541_RS13910 PF02310 B12 binding domain AL541_RS13910 PF02574 Homocysteine S-methyltransferase AL541_RS13910 PF00809 Pterin binding enzyme AL541_RS13915 PF00999 Sodium/hydrogen exchanger family AL541_RS13975 PF01507 Phosphoadenosine phosphosulfate reductase family AL541_RS13980 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL541_RS13980 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL541_RS13985 PF00175 Oxidoreductase NAD-binding domain AL541_RS13985 PF00258 Flavodoxin AL541_RS13985 PF00667 FAD binding domain AL541_RS14005 PF01207 Dihydrouridine synthase (Dus) AL541_RS14010 PF01475 Ferric uptake regulator family AL541_RS14020 PF00342 Phosphoglucose isomerase AL541_RS14025 PF01894 Uncharacterised protein family UPF0047 AL541_RS14030 PF01168 Alanine racemase, N-terminal domain AL541_RS14030 PF00842 Alanine racemase, C-terminal domain AL541_RS14035 PF03796 DnaB-like helicase C terminal domain AL541_RS14035 PF00772 DnaB-like helicase N terminal domain AL541_RS14045 PF01281 Ribosomal protein L9, N-terminal domain AL541_RS14045 PF03948 Ribosomal protein L9, C-terminal domain AL541_RS14050 PF01084 Ribosomal protein S18 AL541_RS14055 PF00436 Single-strand binding protein family AL541_RS14060 PF01250 Ribosomal protein S6 AL541_RS14065 PF00834 Ribulose-phosphate 3 epimerase family AL541_RS14070 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL541_RS14080 PF01761 3-dehydroquinate synthase AL541_RS14085 PF01202 Shikimate kinase AL541_RS14090 PF11741 AMIN domain AL541_RS14090 PF00263 Bacterial type II and III secretion system protein AL541_RS14090 PF03958 Bacterial type II/III secretion system short domain AL541_RS14090 PF07660 Secretin and TonB N terminus short domain AL541_RS14095 PF04351 Pilus assembly protein, PilP AL541_RS14105 PF05137 Fimbrial assembly protein (PilN) AL541_RS14115 PF17092 Penicillin-binding protein OB-like domain AL541_RS14115 PF00912 Transglycosylase AL541_RS14115 PF00905 Penicillin binding protein transpeptidase domain AL541_RS14120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS14120 PF03466 LysR substrate binding domain AL541_RS14125 PF00462 Glutaredoxin AL541_RS14125 PF08534 Redoxin AL541_RS14130 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL541_RS14130 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS14140 PF14698 Argininosuccinate lyase C-terminal AL541_RS14140 PF00206 Lyase AL541_RS14140 PF00583 Acetyltransferase (GNAT) family AL541_RS14145 PF00764 Arginosuccinate synthase AL541_RS14150 PF00696 Amino acid kinase family AL541_RS14155 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL541_RS14155 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL541_RS14160 PF07687 Peptidase dimerisation domain AL541_RS14160 PF01546 Peptidase family M20/M25/M40 AL541_RS14165 PF00311 Phosphoenolpyruvate carboxylase AL541_RS14175 PF02219 Methylenetetrahydrofolate reductase AL541_RS14180 PF00742 Homoserine dehydrogenase AL541_RS14180 PF03447 Homoserine dehydrogenase, NAD binding domain AL541_RS14180 PF00696 Amino acid kinase family AL541_RS14185 PF01053 Cys/Met metabolism PLP-dependent enzyme AL541_RS14190 PF01340 Met Apo-repressor, MetJ AL541_RS14195 PF03949 Malic enzyme, NAD binding domain AL541_RS14195 PF00390 Malic enzyme, N-terminal domain AL541_RS14200 PF00210 Ferritin-like domain AL541_RS14205 PF04324 BFD-like [2Fe-2S] binding domain AL541_RS14210 PF00009 Elongation factor Tu GTP binding domain AL541_RS14210 PF03143 Elongation factor Tu C-terminal domain AL541_RS14210 PF03144 Elongation factor Tu domain 2 AL541_RS14215 PF00679 Elongation factor G C-terminus AL541_RS14215 PF03764 Elongation factor G, domain IV AL541_RS14215 PF14492 Elongation Factor G, domain II AL541_RS14215 PF03144 Elongation factor Tu domain 2 AL541_RS14215 PF00009 Elongation factor Tu GTP binding domain AL541_RS14220 PF00177 Ribosomal protein S7p/S5e AL541_RS14225 PF00164 Ribosomal protein S12/S23 AL541_RS14230 PF04077 DsrH like protein AL541_RS14235 PF02635 DsrE/DsrF-like family AL541_RS14240 PF02635 DsrE/DsrF-like family AL541_RS14245 PF13309 HTH domain AL541_RS14245 PF08348 YheO-like PAS domain AL541_RS14250 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL541_RS14250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL541_RS14260 PF04102 SlyX AL541_RS14265 PF01112 Asparaginase AL541_RS14275 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL541_RS14285 PF02254 TrkA-N domain AL541_RS14285 PF00999 Sodium/hydrogen exchanger family AL541_RS14290 PF02525 Flavodoxin-like fold AL541_RS14295 PF12848 ABC transporter AL541_RS14295 PF00005 ABC transporter AL541_RS14305 PF00561 alpha/beta hydrolase fold AL541_RS14310 PF06794 Uncharacterised protein family (UPF0270) AL541_RS14315 PF00485 Phosphoribulokinase / Uridine kinase family AL541_RS14320 PF13545 Crp-like helix-turn-helix domain AL541_RS14320 PF00027 Cyclic nucleotide-binding domain AL541_RS14330 PF00171 Aldehyde dehydrogenase family AL541_RS14335 PF04958 Arginine N-succinyltransferase beta subunit AL541_RS14340 PF00202 Aminotransferase class-III AL541_RS14345 PF00117 Glutamine amidotransferase class-I AL541_RS14360 PF00579 tRNA synthetases class I (W and Y) AL541_RS14365 PF13419 Haloacid dehalogenase-like hydrolase AL541_RS14370 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL541_RS14370 PF00588 SpoU rRNA Methylase family AL541_RS14375 PF08206 Ribonuclease B OB domain AL541_RS14375 PF08461 Ribonuclease R winged-helix domain AL541_RS14375 PF17876 Cold shock domain AL541_RS14375 PF00773 RNB domain AL541_RS14375 PF00575 S1 RNA binding domain AL541_RS14380 PF02082 Transcriptional regulator AL541_RS14385 PF00175 Oxidoreductase NAD-binding domain AL541_RS14385 PF00042 Globin AL541_RS14385 PF00970 Oxidoreductase FAD-binding domain AL541_RS14390 PF08238 Sel1 repeat AL541_RS14400 PF00709 Adenylosuccinate synthetase AL541_RS14405 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL541_RS14410 PF01145 SPFH domain / Band 7 family AL541_RS14415 PF12221 Bacterial membrane protein N terminal AL541_RS14415 PF01145 SPFH domain / Band 7 family AL541_RS14420 PF16360 GTP-binding GTPase Middle Region AL541_RS14420 PF01926 50S ribosome-binding GTPase AL541_RS14420 PF13167 GTP-binding GTPase N-terminal AL541_RS14425 PF17209 Hfq protein AL541_RS14435 PF01119 DNA mismatch repair protein, C-terminal domain AL541_RS14435 PF08676 MutL C terminal dimerisation domain AL541_RS14440 PF01520 N-acetylmuramoyl-L-alanine amidase AL541_RS14445 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL541_RS14455 PF08331 Domain of unknown function (DUF1730) AL541_RS14520 PF00929 Exonuclease AL541_RS14525 PF03193 RsgA GTPase AL541_RS14530 PF02666 Phosphatidylserine decarboxylase AL541_RS14535 PF00939 Sodium:sulfate symporter transmembrane region AL541_RS14545 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL541_RS14545 PF01676 Metalloenzyme superfamily AL541_RS14550 PF00581 Rhodanese-like domain AL541_RS14555 PF02556 Preprotein translocase subunit SecB AL541_RS14560 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL541_RS14560 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL541_RS14565 PF06426 Serine acetyltransferase, N-terminal AL541_RS14565 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_RS14570 PF01551 Peptidase family M23 AL541_RS14580 PF08360 QacR-like protein, C-terminal region AL541_RS14580 PF00440 Bacterial regulatory proteins, tetR family AL541_RS14590 PF00152 tRNA synthetases class II (D, K and N) AL541_RS14595 PF02910 Fumarate reductase flavoprotein C-term AL541_RS14595 PF00890 FAD binding domain AL541_RS14600 PF13085 2Fe-2S iron-sulfur cluster binding domain AL541_RS14600 PF13183 4Fe-4S dicluster domain AL541_RS14605 PF02300 Fumarate reductase subunit C AL541_RS14610 PF02313 Fumarate reductase subunit D AL541_RS14620 PF09285 Elongation factor P, C-terminal AL541_RS14620 PF01132 Elongation factor P (EF-P) OB domain AL541_RS14620 PF08207 Elongation factor P (EF-P) KOW-like domain AL541_RS14625 PF04055 Radical SAM superfamily AL541_RS14630 PF02308 MgtC family AL541_RS14640 PF00118 TCP-1/cpn60 chaperonin family AL541_RS14645 PF00166 Chaperonin 10 Kd subunit AL541_RS14650 PF01554 MatE AL541_RS14655 PF00365 Phosphofructokinase AL541_RS14660 PF16916 Dimerisation domain of Zinc Transporter AL541_RS14660 PF01545 Cation efflux family AL541_RS14665 PF07813 LTXXQ motif family protein AL541_RS14670 PF00072 Response regulator receiver domain AL541_RS14670 PF00486 Transcriptional regulatory protein, C terminal AL541_RS14675 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS14675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS14675 PF00672 HAMP domain AL541_RS14675 PF16527 Two-component sensor protein CpxA, periplasmic domain AL541_RS14680 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL541_RS14680 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL541_RS14685 PF00588 SpoU rRNA Methylase family AL541_RS14690 PF04186 FxsA cytoplasmic membrane protein AL541_RS14695 PF00206 Lyase AL541_RS14695 PF10415 Fumarase C C-terminus AL541_RS14700 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL541_RS14705 PF11412 Disulphide bond corrector protein DsbC AL541_RS14705 PF02683 Cytochrome C biogenesis protein transmembrane region AL541_RS14710 PF00196 Bacterial regulatory proteins, luxR family AL541_RS14710 PF00072 Response regulator receiver domain AL541_RS14715 PF02080 TrkA-C domain AL541_RS14715 PF00999 Sodium/hydrogen exchanger family AL541_RS14715 PF03471 Transporter associated domain AL541_RS14725 PF00474 Sodium:solute symporter family AL541_RS14740 PF00206 Lyase AL541_RS14740 PF10415 Fumarase C C-terminus AL541_RS14745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS14745 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS14745 PF00072 Response regulator receiver domain AL541_RS14745 PF09308 LuxQ, periplasmic AL541_RS14750 PF12832 MFS_1 like family AL541_RS14765 PF16177 Acetyl-coenzyme A synthetase N-terminus AL541_RS14765 PF00501 AMP-binding enzyme AL541_RS14765 PF13193 AMP-binding enzyme C-terminal domain AL541_RS14770 PF01220 Dehydroquinase class II AL541_RS14775 PF00364 Biotin-requiring enzyme AL541_RS14780 PF02785 Biotin carboxylase C-terminal domain AL541_RS14780 PF00289 Biotin carboxylase, N-terminal domain AL541_RS14780 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL541_RS14795 PF01207 Dihydrouridine synthase (Dus) AL541_RS14800 PF02954 Bacterial regulatory protein, Fis family AL541_RS14810 PF00005 ABC transporter AL541_RS14810 PF12848 ABC transporter AL541_RS14865 PF01276 Orn/Lys/Arg decarboxylase, major domain AL541_RS14865 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL541_RS14865 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL541_RS14870 PF13520 Amino acid permease AL541_RS14880 PF18500 CadC C-terminal domain 1 AL541_RS14880 PF00486 Transcriptional regulatory protein, C terminal AL541_RS14885 PF13411 MerR HTH family regulatory protein AL541_RS14895 PF02142 MGS-like domain AL541_RS14895 PF01808 AICARFT/IMPCHase bienzyme AL541_RS14900 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL541_RS14900 PF02843 Phosphoribosylglycinamide synthetase, C domain AL541_RS14900 PF02844 Phosphoribosylglycinamide synthetase, N domain AL541_RS14910 PF00216 Bacterial DNA-binding protein AL541_RS14915 PF01595 Cyclin M transmembrane N-terminal domain AL541_RS14915 PF00571 CBS domain AL541_RS14920 PF04222 Protein of unknown function (DUF416) AL541_RS14925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL541_RS14930 PF03167 Uracil DNA glycosylase superfamily AL541_RS14935 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL541_RS14940 PF00293 NUDIX domain AL541_RS14940 PF09297 NADH pyrophosphatase zinc ribbon domain AL541_RS14945 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL541_RS14950 PF04998 RNA polymerase Rpb1, domain 5 AL541_RS14950 PF04997 RNA polymerase Rpb1, domain 1 AL541_RS14950 PF05000 RNA polymerase Rpb1, domain 4 AL541_RS14950 PF00623 RNA polymerase Rpb1, domain 2 AL541_RS14950 PF04983 RNA polymerase Rpb1, domain 3 AL541_RS14955 PF04563 RNA polymerase beta subunit AL541_RS14955 PF04561 RNA polymerase Rpb2, domain 2 AL541_RS14955 PF04560 RNA polymerase Rpb2, domain 7 AL541_RS14955 PF10385 RNA polymerase beta subunit external 1 domain AL541_RS14955 PF00562 RNA polymerase Rpb2, domain 6 AL541_RS14955 PF04565 RNA polymerase Rpb2, domain 3 AL541_RS14960 PF00542 Ribosomal protein L7/L12 C-terminal domain AL541_RS14960 PF16320 Ribosomal protein L7/L12 dimerisation domain AL541_RS14965 PF00466 Ribosomal protein L10 AL541_RS14970 PF00687 Ribosomal protein L1p/L10e family AL541_RS14975 PF00298 Ribosomal protein L11, RNA binding domain AL541_RS14975 PF03946 Ribosomal protein L11, N-terminal domain AL541_RS14980 PF02357 Transcription termination factor nusG AL541_RS14980 PF00467 KOW motif AL541_RS14985 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL541_RS14995 PF00009 Elongation factor Tu GTP binding domain AL541_RS14995 PF03144 Elongation factor Tu domain 2 AL541_RS14995 PF03143 Elongation factor Tu C-terminal domain AL541_RS15025 PF00485 Phosphoribulokinase / Uridine kinase family AL541_RS15030 PF08279 HTH domain AL541_RS15030 PF03099 Biotin/lipoate A/B protein ligase family AL541_RS15030 PF02237 Biotin protein ligase C terminal domain AL541_RS15035 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL541_RS15035 PF01565 FAD binding domain AL541_RS15045 PF13091 PLD-like domain AL541_RS15110 PF01177 Asp/Glu/Hydantoin racemase AL541_RS15120 PF00593 TonB dependent receptor AL541_RS15120 PF07715 TonB-dependent Receptor Plug Domain AL541_RS15125 PF05958 tRNA (Uracil-5-)-methyltransferase AL541_RS15135 PF00440 Bacterial regulatory proteins, tetR family AL541_RS15140 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL541_RS15140 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS15145 PF01554 MatE AL541_RS15150 PF04072 Leucine carboxyl methyltransferase AL541_RS15160 PF00717 Peptidase S24-like AL541_RS15160 PF01726 LexA DNA binding domain AL541_RS15170 PF01553 Acyltransferase AL541_RS15175 PF01040 UbiA prenyltransferase family AL541_RS15180 PF04345 Chorismate lyase AL541_RS15185 PF03748 Flagellar basal body-associated protein FliL AL541_RS15190 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL541_RS15190 PF01694 Rhomboid family AL541_RS15195 PF00581 Rhodanese-like domain AL541_RS15205 PF04542 Sigma-70 region 2 AL541_RS15205 PF00140 Sigma-70 factor, region 1.2 AL541_RS15205 PF04545 Sigma-70, region 4 AL541_RS15210 PF18075 FtsX extracellular domain AL541_RS15215 PF00005 ABC transporter AL541_RS15220 PF00448 SRP54-type protein, GTPase domain AL541_RS15220 PF02881 SRP54-type protein, helical bundle domain AL541_RS15235 PF01914 MarC family integral membrane protein AL541_RS15260 PF10694 Protein of unknown function (DUF2500) AL541_RS15280 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_RS15280 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL541_RS15285 PF01022 Bacterial regulatory protein, arsR family AL541_RS15290 PF00563 EAL domain AL541_RS15290 PF08668 HDOD domain AL541_RS15295 PF01810 LysE type translocator AL541_RS15300 PF12146 Serine aminopeptidase, S33 AL541_RS15320 PF03942 DTW domain AL541_RS15325 PF00563 EAL domain AL541_RS15325 PF08495 FIST N domain AL541_RS15325 PF10442 FIST C domain AL541_RS15325 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS15330 PF13419 Haloacid dehalogenase-like hydrolase AL541_RS15335 PF02899 Phage integrase, N-terminal SAM-like domain AL541_RS15335 PF00589 Phage integrase family AL541_RS15345 PF01678 Diaminopimelate epimerase AL541_RS15350 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL541_RS15350 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL541_RS15360 PF01491 Frataxin-like domain AL541_RS15365 PF12633 Adenylate cyclase NT domain AL541_RS15365 PF01295 Adenylate cyclase, class-I AL541_RS15370 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL541_RS15370 PF03900 Porphobilinogen deaminase, C-terminal domain AL541_RS15375 PF02602 Uroporphyrinogen-III synthase HemD AL541_RS15380 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL541_RS15385 PF07219 HemY protein N-terminus AL541_RS15425 PF00175 Oxidoreductase NAD-binding domain AL541_RS15430 PF00111 2Fe-2S iron-sulfur cluster binding domain AL541_RS15435 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL541_RS15445 PF07497 Rho termination factor, RNA-binding domain AL541_RS15445 PF07498 Rho termination factor, N-terminal domain AL541_RS15445 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL541_RS15450 PF00085 Thioredoxin AL541_RS15455 PF00270 DEAD/DEAH box helicase AL541_RS15455 PF00271 Helicase conserved C-terminal domain AL541_RS15460 PF02541 Ppx/GppA phosphatase family AL541_RS15470 PF02592 Putative vitamin uptake transporter AL541_RS15485 PF09382 RQC domain AL541_RS15485 PF16124 RecQ zinc-binding AL541_RS15485 PF00270 DEAD/DEAH box helicase AL541_RS15485 PF00271 Helicase conserved C-terminal domain AL541_RS15485 PF00570 HRDC domain AL541_RS15490 PF00892 EamA-like transporter family AL541_RS15500 PF01810 LysE type translocator AL541_RS15515 PF13361 UvrD-like helicase C-terminal domain AL541_RS15515 PF00580 UvrD/REP helicase N-terminal domain AL541_RS15525 PF05114 Protein of unknown function (DUF692) AL541_RS15545 PF07690 Major Facilitator Superfamily AL541_RS15550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS15550 PF03466 LysR substrate binding domain AL541_RS15555 PF00557 Metallopeptidase family M24 AL541_RS15555 PF01321 Creatinase/Prolidase N-terminal domain AL541_RS15555 PF00557 Metallopeptidase family M24 AL541_RS15555 PF01321 Creatinase/Prolidase N-terminal domain AL541_RS15560 PF06968 Biotin and Thiamin Synthesis associated domain AL541_RS15560 PF04055 Radical SAM superfamily AL541_RS15565 PF05690 Thiazole biosynthesis protein ThiG AL541_RS15575 PF00899 ThiF family AL541_RS15580 PF02581 Thiamine monophosphate synthase AL541_RS15585 PF01964 Radical SAM ThiC family AL541_RS15585 PF13667 ThiC-associated domain AL541_RS15590 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL541_RS15595 PF00394 Multicopper oxidase AL541_RS15595 PF07731 Multicopper oxidase AL541_RS15595 PF07732 Multicopper oxidase AL541_RS15640 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_RS15645 PF07369 Protein of unknown function (DUF1488) AL541_RS15650 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL541_RS15650 PF08501 Shikimate dehydrogenase substrate binding domain AL541_RS15650 PF01488 Shikimate / quinate 5-dehydrogenase AL541_RS15655 PF01218 Coproporphyrinogen III oxidase AL541_RS15660 PF01300 Telomere recombination AL541_RS15665 PF00731 AIR carboxylase AL541_RS15670 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL541_RS15670 PF02222 ATP-grasp domain AL541_RS15675 PF01396 Topoisomerase DNA binding C4 zinc finger AL541_RS15685 PF04361 Protein of unknown function (DUF494) AL541_RS15690 PF02481 DNA recombination-mediator protein A AL541_RS15690 PF17782 DprA winged helix domain AL541_RS15700 PF01327 Polypeptide deformylase AL541_RS15705 PF00551 Formyl transferase AL541_RS15705 PF02911 Formyl transferase, C-terminal domain AL541_RS15710 PF01029 NusB family AL541_RS15710 PF01189 16S rRNA methyltransferase RsmB/F AL541_RS15715 PF02080 TrkA-C domain AL541_RS15715 PF02254 TrkA-N domain AL541_RS15720 PF02386 Cation transport protein AL541_RS15730 PF03006 Haemolysin-III related AL541_RS15735 PF07070 SpoOM protein AL541_RS15745 PF06288 Protein of unknown function (DUF1040) AL541_RS15750 PF13746 4Fe-4S dicluster domain AL541_RS15750 PF12801 4Fe-4S binding domain AL541_RS15750 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL541_RS15755 PF01636 Phosphotransferase enzyme family AL541_RS15760 PF01323 DSBA-like thioredoxin domain AL541_RS15765 PF01553 Acyltransferase AL541_RS15775 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL541_RS15775 PF01078 Magnesium chelatase, subunit ChlI AL541_RS15780 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL541_RS15780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL541_RS15780 PF00205 Thiamine pyrophosphate enzyme, central domain AL541_RS15790 PF01063 Amino-transferase class IV AL541_RS15795 PF00920 Dehydratase family AL541_RS15800 PF00585 C-terminal regulatory domain of Threonine dehydratase AL541_RS15800 PF00291 Pyridoxal-phosphate dependent enzyme AL541_RS15805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS15805 PF03466 LysR substrate binding domain AL541_RS15810 PF07690 Major Facilitator Superfamily AL541_RS15815 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_RS15820 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS15825 PF12804 MobA-like NTP transferase domain AL541_RS15825 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_RS15830 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL541_RS15830 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL541_RS15835 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL541_RS15835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL541_RS15840 PF00231 ATP synthase AL541_RS15845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL541_RS15845 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL541_RS15845 PF00306 ATP synthase alpha/beta chain, C terminal domain AL541_RS15850 PF00213 ATP synthase delta (OSCP) subunit AL541_RS15855 PF00430 ATP synthase B/B' CF(0) AL541_RS15860 PF00137 ATP synthase subunit C AL541_RS15865 PF00119 ATP synthase A chain AL541_RS15870 PF03899 ATP synthase I chain AL541_RS15875 PF02195 ParB-like nuclease domain AL541_RS15875 PF17762 HTH domain found in ParB protein AL541_RS15880 PF13614 AAA domain AL541_RS15885 PF02527 rRNA small subunit methyltransferase G AL541_RS15890 PF01134 Glucose inhibited division protein A AL541_RS15890 PF13932 GidA associated domain AL541_RS15895 PF00258 Flavodoxin AL541_RS15900 PF12631 MnmE helical domain AL541_RS15900 PF10396 GTP-binding protein TrmE N-terminus AL541_RS15900 PF01926 50S ribosome-binding GTPase AL541_RS15905 PF14849 YidC periplasmic domain AL541_RS15905 PF02096 60Kd inner membrane protein AL541_RS15910 PF01809 Putative membrane protein insertion efficiency factor AL541_RS15915 PF00825 Ribonuclease P AL541_RS15920 PF00468 Ribosomal protein L34 AL541_RS15925 PF00005 ABC transporter AL541_RS15930 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS15935 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_RS15945 PF00308 Bacterial dnaA protein AL541_RS15945 PF11638 DnaA N-terminal domain AL541_RS15945 PF08299 Bacterial dnaA protein helix-turn-helix AL541_RS15950 PF02768 DNA polymerase III beta subunit, C-terminal domain AL541_RS15950 PF02767 DNA polymerase III beta subunit, central domain AL541_RS15950 PF00712 DNA polymerase III beta subunit, N-terminal domain AL541_RS15955 PF02463 RecF/RecN/SMC N terminal domain AL541_RS15960 PF00986 DNA gyrase B subunit, carboxyl terminus AL541_RS15960 PF18053 DNA gyrase B subunit insert domain AL541_RS15960 PF01751 Toprim domain AL541_RS15960 PF00204 DNA gyrase B AL541_RS15960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS15980 PF00011 Hsp20/alpha crystallin family AL541_RS15985 PF00155 Aminotransferase class I and II AL541_RS15990 PF00128 Alpha amylase, catalytic domain AL541_RS15995 PF05746 DALR anticodon binding domain AL541_RS15995 PF02092 Glycyl-tRNA synthetase beta subunit AL541_RS16000 PF02091 Glycyl-tRNA synthetase alpha subunit AL541_RS16005 PF01169 Uncharacterized protein family UPF0016 AL541_RS16015 PF01206 Sulfurtransferase TusA AL541_RS16025 PF03466 LysR substrate binding domain AL541_RS16025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS16030 PF00107 Zinc-binding dehydrogenase AL541_RS16030 PF08240 Alcohol dehydrogenase GroES-like domain AL541_RS16035 PF00108 Thiolase, N-terminal domain AL541_RS16035 PF02803 Thiolase, C-terminal domain AL541_RS16040 PF00378 Enoyl-CoA hydratase/isomerase AL541_RS16040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL541_RS16040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL541_RS16045 PF09186 Domain of unknown function (DUF1949) AL541_RS16045 PF01205 Uncharacterized protein family UPF0029 AL541_RS16050 PF02386 Cation transport protein AL541_RS16055 PF12724 Flavodoxin domain AL541_RS16095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS16095 PF03466 LysR substrate binding domain AL541_RS16100 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL541_RS16100 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL541_RS16105 PF04380 Membrane fusogenic activity AL541_RS16110 PF00873 AcrB/AcrD/AcrF family AL541_RS16115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_RS16120 PF00440 Bacterial regulatory proteins, tetR family AL541_RS16120 PF16295 Tetracyclin repressor-like, C-terminal domain AL541_RS16125 PF13361 UvrD-like helicase C-terminal domain AL541_RS16125 PF00580 UvrD/REP helicase N-terminal domain AL541_RS16130 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL541_RS16160 PF13419 Haloacid dehalogenase-like hydrolase AL541_RS16170 PF00005 ABC transporter AL541_RS16170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS16175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_RS16180 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS16185 PF12911 N-terminal TM domain of oligopeptide transport permease C AL541_RS16185 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS16220 PF00069 Protein kinase domain AL541_RS16225 PF00356 Bacterial regulatory proteins, lacI family AL541_RS16225 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL541_RS16230 PF03466 LysR substrate binding domain AL541_RS16230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS16235 PF00893 Small Multidrug Resistance protein AL541_RS16240 PF00893 Small Multidrug Resistance protein AL541_RS16245 PF00920 Dehydratase family AL541_RS16250 PF01202 Shikimate kinase AL541_RS16255 PF02447 GntP family permease AL541_RS16260 PF01081 KDPG and KHG aldolase AL541_RS16265 PF01048 Phosphorylase superfamily AL541_RS16270 PF03466 LysR substrate binding domain AL541_RS16270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS16275 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL541_RS16275 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS16280 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL541_RS16285 PF01432 Peptidase family M3 AL541_RS16290 PF01037 Lrp/AsnC ligand binding domain AL541_RS16295 PF00563 EAL domain AL541_RS16295 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS16295 PF08448 PAS fold AL541_RS16300 PF04445 Putative SAM-dependent methyltransferase AL541_RS16310 PF00892 EamA-like transporter family AL541_RS16315 PF00582 Universal stress protein family AL541_RS16320 PF00210 Ferritin-like domain AL541_RS16325 PF10625 Universal stress protein B (UspB) AL541_RS16335 PF00158 Sigma-54 interaction domain AL541_RS16335 PF02954 Bacterial regulatory protein, Fis family AL541_RS16335 PF01590 GAF domain AL541_RS16360 PF00781 Diacylglycerol kinase catalytic domain AL541_RS16390 PF01594 AI-2E family transporter AL541_RS16395 PF00563 EAL domain AL541_RS16395 PF03707 Bacterial signalling protein N terminal repeat AL541_RS16395 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS16405 PF02646 RmuC family AL541_RS16410 PF01209 ubiE/COQ5 methyltransferase family AL541_RS16415 PF02036 SCP-2 sterol transfer family AL541_RS16420 PF03109 ABC1 family AL541_RS16425 PF02416 mttA/Hcf106 family AL541_RS16430 PF02416 mttA/Hcf106 family AL541_RS16435 PF00902 Sec-independent protein translocase protein (TatC) AL541_RS16445 PF01026 TatD related DNase AL541_RS16455 PF00490 Delta-aminolevulinic acid dehydratase AL541_RS16460 PF00583 Acetyltransferase (GNAT) family AL541_RS16470 PF01367 5'-3' exonuclease, C-terminal SAM fold AL541_RS16470 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL541_RS16470 PF00476 DNA polymerase family A AL541_RS16470 PF01612 3'-5' exonuclease AL541_RS16475 PF01926 50S ribosome-binding GTPase AL541_RS16480 PF00034 Cytochrome c AL541_RS16495 PF04220 Der GTPase activator (YihI) AL541_RS16500 PF10675 Protein of unknown function (DUF2489) AL541_RS16505 PF06969 HemN C-terminal domain AL541_RS16505 PF04055 Radical SAM superfamily AL541_RS16510 PF00962 Adenosine/AMP deaminase AL541_RS16515 PF00563 EAL domain AL541_RS16515 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS16515 PF03707 Bacterial signalling protein N terminal repeat AL541_RS16520 PF00158 Sigma-54 interaction domain AL541_RS16520 PF00072 Response regulator receiver domain AL541_RS16520 PF02954 Bacterial regulatory protein, Fis family AL541_RS16525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS16525 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS16525 PF00989 PAS fold AL541_RS16535 PF00120 Glutamine synthetase, catalytic domain AL541_RS16535 PF03951 Glutamine synthetase, beta-Grasp domain AL541_RS16540 PF00009 Elongation factor Tu GTP binding domain AL541_RS16540 PF00679 Elongation factor G C-terminus AL541_RS16540 PF03144 Elongation factor Tu domain 2 AL541_RS16545 PF00308 Bacterial dnaA protein AL541_RS16545 PF08299 Bacterial dnaA protein helix-turn-helix AL541_RS16555 PF03631 Virulence factor BrkB AL541_RS16560 PF02580 D-Tyr-tRNA(Tyr) deacylase AL541_RS16565 PF00583 Acetyltransferase (GNAT) family AL541_RS16565 PF09500 Putative thioesterase (yiiD_Cterm) AL541_RS16575 PF01293 Phosphoenolpyruvate carboxykinase AL541_RS16580 PF01430 Hsp33 protein AL541_RS16585 PF01479 S4 domain AL541_RS16590 PF11356 Type II secretion system protein C AL541_RS16595 PF00263 Bacterial type II and III secretion system protein AL541_RS16595 PF03958 Bacterial type II/III secretion system short domain AL541_RS16600 PF00437 Type II/IV secretion system protein AL541_RS16605 PF00482 Type II secretion system (T2SS), protein F AL541_RS16610 PF07963 Prokaryotic N-terminal methylation motif AL541_RS16610 PF08334 Type II secretion system (T2SS), protein G AL541_RS16615 PF12019 Type II transport protein GspH AL541_RS16620 PF07963 Prokaryotic N-terminal methylation motif AL541_RS16620 PF02501 Type II secretion system (T2SS), protein I AL541_RS16625 PF11612 Type II secretion system (T2SS), protein J AL541_RS16625 PF07963 Prokaryotic N-terminal methylation motif AL541_RS16630 PF03934 Type II secretion system (T2SS), protein K AL541_RS16635 PF05134 Type II secretion system (T2SS), protein L AL541_RS16635 PF12693 GspL periplasmic domain AL541_RS16640 PF04612 Type II secretion system (T2SS), protein M AL541_RS16645 PF01203 Type II secretion system (T2SS), protein N AL541_RS16650 PF00459 Inositol monophosphatase family AL541_RS16655 PF00293 NUDIX domain AL541_RS16660 PF01521 Iron-sulphur cluster biosynthesis AL541_RS16660 PF01106 NifU-like domain AL541_RS16665 PF00156 Phosphoribosyl transferase domain AL541_RS16670 PF00561 alpha/beta hydrolase fold AL541_RS16680 PF16921 Tex protein YqgF-like domain AL541_RS16680 PF09371 Tex-like protein N-terminal domain AL541_RS16680 PF17674 HHH domain AL541_RS16680 PF00575 S1 RNA binding domain AL541_RS16690 PF03449 Transcription elongation factor, N-terminal AL541_RS16690 PF01272 Transcription elongation factor, GreA/GreB, C-term AL541_RS16700 PF00486 Transcriptional regulatory protein, C terminal AL541_RS16700 PF00072 Response regulator receiver domain AL541_RS16705 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS16705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS16705 PF00672 HAMP domain AL541_RS16710 PF00860 Permease family AL541_RS16715 PF17191 RecG wedge domain AL541_RS16715 PF00271 Helicase conserved C-terminal domain AL541_RS16715 PF00270 DEAD/DEAH box helicase AL541_RS16720 PF00588 SpoU rRNA Methylase family AL541_RS16720 PF12105 SpoU, rRNA methylase, C-terminal AL541_RS16725 PF13291 ACT domain AL541_RS16725 PF04607 Region found in RelA / SpoT proteins AL541_RS16725 PF02824 TGS domain AL541_RS16730 PF01192 RNA polymerase Rpb6 AL541_RS16735 PF00625 Guanylate kinase AL541_RS16755 PF02472 Biopolymer transport protein ExbD/TolR AL541_RS16760 PF01618 MotA/TolQ/ExbB proton channel family AL541_RS16775 PF00593 TonB dependent receptor AL541_RS16775 PF07715 TonB-dependent Receptor Plug Domain AL541_RS16785 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS16790 PF12911 N-terminal TM domain of oligopeptide transport permease C AL541_RS16790 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS16795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_RS16800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS16800 PF00005 ABC transporter AL541_RS16805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS16805 PF00005 ABC transporter AL541_RS16815 PF03755 YicC-like family, N-terminal region AL541_RS16815 PF08340 Domain of unknown function (DUF1732) AL541_RS16825 PF01138 3' exoribonuclease family, domain 1 AL541_RS16825 PF03725 3' exoribonuclease family, domain 2 AL541_RS16830 PF00156 Phosphoribosyl transferase domain AL541_RS16835 PF03279 Bacterial lipid A biosynthesis acyltransferase AL541_RS16840 PF00440 Bacterial regulatory proteins, tetR family AL541_RS16845 PF02441 Flavoprotein AL541_RS16845 PF04127 DNA / pantothenate metabolism flavoprotein AL541_RS16855 PF00672 HAMP domain AL541_RS16855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS16855 PF02743 Cache domain AL541_RS16860 PF04002 RadC-like JAB domain AL541_RS16865 PF00830 Ribosomal L28 family AL541_RS16870 PF00471 Ribosomal protein L33 AL541_RS16880 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL541_RS16880 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL541_RS16880 PF06827 Zinc finger found in FPG and IleRS AL541_RS16885 PF01467 Cytidylyltransferase-like AL541_RS16890 PF05686 Glycosyl transferase family 90 AL541_RS16895 PF00535 Glycosyl transferase family 2 AL541_RS16900 PF00535 Glycosyl transferase family 2 AL541_RS16905 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL541_RS16910 PF01219 Prokaryotic diacylglycerol kinase AL541_RS16920 PF16363 GDP-mannose 4,6 dehydratase AL541_RS16925 PF00483 Nucleotidyl transferase AL541_RS16930 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL541_RS16935 PF00975 Thioesterase domain AL541_RS16935 PF00501 AMP-binding enzyme AL541_RS16935 PF00668 Condensation domain AL541_RS16935 PF13193 AMP-binding enzyme C-terminal domain AL541_RS16935 PF00550 Phosphopantetheine attachment site AL541_RS16945 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL541_RS16945 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL541_RS16960 PF00551 Formyl transferase AL541_RS16960 PF02911 Formyl transferase, C-terminal domain AL541_RS16970 PF00535 Glycosyl transferase family 2 AL541_RS16975 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL541_RS16980 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL541_RS16985 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) AL541_RS16990 PF03279 Bacterial lipid A biosynthesis acyltransferase AL541_RS16995 PF01370 NAD dependent epimerase/dehydratase family AL541_RS17000 PF06082 Exopolysaccharide biosynthesis protein YbjH AL541_RS17060 PF00535 Glycosyl transferase family 2 AL541_RS17070 PF16363 GDP-mannose 4,6 dehydratase AL541_RS17075 PF01370 NAD dependent epimerase/dehydratase family AL541_RS17080 PF00293 NUDIX domain AL541_RS17085 PF00483 Nucleotidyl transferase AL541_RS17085 PF01050 Mannose-6-phosphate isomerase AL541_RS17090 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL541_RS17090 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL541_RS17090 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL541_RS17090 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL541_RS17095 PF01238 Phosphomannose isomerase type I AL541_RS17100 PF00535 Glycosyl transferase family 2 AL541_RS17105 PF01370 NAD dependent epimerase/dehydratase family AL541_RS17110 PF02397 Bacterial sugar transferase AL541_RS17115 PF02719 Polysaccharide biosynthesis protein AL541_RS17120 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL541_RS17120 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL541_RS17120 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL541_RS17125 PF00483 Nucleotidyl transferase AL541_RS17130 PF00753 Metallo-beta-lactamase superfamily AL541_RS17130 PF10996 Beta-Casp domain AL541_RS17130 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AL541_RS17135 PF00121 Triosephosphate isomerase AL541_RS17140 PF13302 Acetyltransferase (GNAT) domain AL541_RS17150 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL541_RS17155 PF00873 AcrB/AcrD/AcrF family AL541_RS17160 PF13533 Biotin-lipoyl like AL541_RS17170 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL541_RS17170 PF00326 Prolyl oligopeptidase family AL541_RS17175 PF00005 ABC transporter AL541_RS17175 PF16326 ABC transporter C-terminal domain AL541_RS17175 PF12848 ABC transporter AL541_RS17180 PF00582 Universal stress protein family AL541_RS17185 PF02525 Flavodoxin-like fold AL541_RS17190 PF00999 Sodium/hydrogen exchanger family AL541_RS17190 PF02254 TrkA-N domain AL541_RS17205 PF00128 Alpha amylase, catalytic domain AL541_RS17210 PF13411 MerR HTH family regulatory protein AL541_RS17215 PF02627 Carboxymuconolactone decarboxylase family AL541_RS17225 PF01752 Collagenase AL541_RS17225 PF08453 Peptidase family M9 N-terminal AL541_RS17225 PF04151 Bacterial pre-peptidase C-terminal domain AL541_RS17235 PF17848 Acetyl-coA carboxylase zinc finger domain AL541_RS17235 PF01039 Carboxyl transferase domain AL541_RS17240 PF03466 LysR substrate binding domain AL541_RS17240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS17245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS17245 PF02743 Cache domain AL541_RS17245 PF00672 HAMP domain AL541_RS17255 PF03824 High-affinity nickel-transport protein AL541_RS17260 PF02583 Metal-sensitive transcriptional repressor AL541_RS17265 PF02447 GntP family permease AL541_RS17270 PF01370 NAD dependent epimerase/dehydratase family AL541_RS17275 PF01261 Xylose isomerase-like TIM barrel AL541_RS17280 PF00596 Class II Aldolase and Adducin N-terminal domain AL541_RS17285 PF07005 Sugar-binding N-terminal domain AL541_RS17285 PF17042 Nucleotide-binding C-terminal domain AL541_RS17290 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL541_RS17290 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL541_RS17295 PF00455 DeoR C terminal sensor domain AL541_RS17295 PF08220 DeoR-like helix-turn-helix domain AL541_RS17300 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS17305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_RS17310 PF00005 ABC transporter AL541_RS17310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS17315 PF00005 ABC transporter AL541_RS17315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS17320 PF01554 MatE AL541_RS17330 PF00072 Response regulator receiver domain AL541_RS17330 PF01584 CheW-like domain AL541_RS17340 PF01243 Pyridoxamine 5'-phosphate oxidase AL541_RS17345 PF06228 Haem utilisation ChuX/HutX AL541_RS17350 PF04055 Radical SAM superfamily AL541_RS17355 PF03544 Gram-negative bacterial TonB protein C-terminal AL541_RS17360 PF01618 MotA/TolQ/ExbB proton channel family AL541_RS17365 PF02472 Biopolymer transport protein ExbD/TolR AL541_RS17375 PF01032 FecCD transport family AL541_RS17380 PF00005 ABC transporter AL541_RS17420 PF01467 Cytidylyltransferase-like AL541_RS17425 PF02540 NAD synthase AL541_RS17430 PF00111 2Fe-2S iron-sulfur cluster binding domain AL541_RS17430 PF03473 MOSC domain AL541_RS17430 PF00111 2Fe-2S iron-sulfur cluster binding domain AL541_RS17430 PF03476 MOSC N-terminal beta barrel domain AL541_RS17430 PF03476 MOSC N-terminal beta barrel domain AL541_RS17430 PF03473 MOSC domain AL541_RS17435 PF01679 Proteolipid membrane potential modulator AL541_RS17445 PF01979 Amidohydrolase family AL541_RS17450 PF05661 Protein of unknown function (DUF808) AL541_RS17460 PF01032 FecCD transport family AL541_RS17465 PF01032 FecCD transport family AL541_RS17470 PF01497 Periplasmic binding protein AL541_RS17475 PF00593 TonB dependent receptor AL541_RS17475 PF07715 TonB-dependent Receptor Plug Domain AL541_RS17480 PF00005 ABC transporter AL541_RS17480 PF04954 Siderophore-interacting protein AL541_RS17480 PF08021 Siderophore-interacting FAD-binding domain AL541_RS17480 PF00664 ABC transporter transmembrane region AL541_RS17485 PF00005 ABC transporter AL541_RS17485 PF00664 ABC transporter transmembrane region AL541_RS17510 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS17515 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS17515 PF14785 Maltose transport system permease protein MalF P2 domain AL541_RS17520 PF01547 Bacterial extracellular solute-binding protein AL541_RS17525 PF08402 TOBE domain AL541_RS17525 PF00005 ABC transporter AL541_RS17530 PF02397 Bacterial sugar transferase AL541_RS17545 PF13807 G-rich domain on putative tyrosine kinase AL541_RS17545 PF02706 Chain length determinant protein AL541_RS17545 PF13614 AAA domain AL541_RS17555 PF13439 Glycosyltransferase Family 4 AL541_RS17555 PF00534 Glycosyl transferases group 1 AL541_RS17585 PF04266 ASCH domain AL541_RS17590 PF00440 Bacterial regulatory proteins, tetR family AL541_RS17590 PF16925 Tetracyclin repressor-like, C-terminal domain AL541_RS17595 PF00107 Zinc-binding dehydrogenase AL541_RS17595 PF16884 N-terminal domain of oxidoreductase AL541_RS17600 PF13417 Glutathione S-transferase, N-terminal domain AL541_RS17605 PF00199 Catalase AL541_RS17605 PF06628 Catalase-related immune-responsive AL541_RS17610 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL541_RS17610 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL541_RS17620 PF18113 Rubredoxin binding C-terminal domain AL541_RS17620 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS17625 PF00258 Flavodoxin AL541_RS17625 PF00301 Rubredoxin AL541_RS17625 PF00753 Metallo-beta-lactamase superfamily AL541_RS17630 PF01590 GAF domain AL541_RS17630 PF00158 Sigma-54 interaction domain AL541_RS17640 PF13419 Haloacid dehalogenase-like hydrolase AL541_RS17645 PF00127 Copper binding proteins, plastocyanin/azurin family AL541_RS17655 PF01266 FAD dependent oxidoreductase AL541_RS17660 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS17660 PF18113 Rubredoxin binding C-terminal domain AL541_RS17665 PF00171 Aldehyde dehydrogenase family AL541_RS17670 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AL541_RS17670 PF00355 Rieske [2Fe-2S] domain AL541_RS17675 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_RS17680 PF03466 LysR substrate binding domain AL541_RS17680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS17685 PF02386 Cation transport protein AL541_RS17690 PF02080 TrkA-C domain AL541_RS17690 PF02254 TrkA-N domain AL541_RS17695 PF00486 Transcriptional regulatory protein, C terminal AL541_RS17695 PF00072 Response regulator receiver domain AL541_RS17700 PF13493 Domain of unknown function (DUF4118) AL541_RS17700 PF02702 Osmosensitive K+ channel His kinase sensor domain AL541_RS17700 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS17700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS17705 PF00005 ABC transporter AL541_RS17705 PF00664 ABC transporter transmembrane region AL541_RS17710 PF00593 TonB dependent receptor AL541_RS17710 PF07715 TonB-dependent Receptor Plug Domain AL541_RS17715 PF00005 ABC transporter AL541_RS17720 PF01497 Periplasmic binding protein AL541_RS17725 PF01032 FecCD transport family AL541_RS17735 PF00529 HlyD membrane-fusion protein of T1SS AL541_RS17740 PF00005 ABC transporter AL541_RS17740 PF00664 ABC transporter transmembrane region AL541_RS17750 PF00196 Bacterial regulatory proteins, luxR family AL541_RS17755 PF00196 Bacterial regulatory proteins, luxR family AL541_RS17765 PF00672 HAMP domain AL541_RS17765 PF02743 Cache domain AL541_RS17765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS17770 PF17863 AAA lid domain AL541_RS17770 PF07726 ATPase family associated with various cellular activities (AAA) AL541_RS17775 PF01882 Protein of unknown function DUF58 AL541_RS17785 PF13519 von Willebrand factor type A domain AL541_RS17790 PF13519 von Willebrand factor type A domain AL541_RS17790 PF07584 Aerotolerance regulator N-terminal AL541_RS17805 PF00005 ABC transporter AL541_RS17810 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS17815 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS17820 PF12849 PBP superfamily domain AL541_RS17825 PF00672 HAMP domain AL541_RS17825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS17845 PF00593 TonB dependent receptor AL541_RS17845 PF07715 TonB-dependent Receptor Plug Domain AL541_RS17850 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL541_RS17850 PF00326 Prolyl oligopeptidase family AL541_RS17855 PF00270 DEAD/DEAH box helicase AL541_RS17855 PF00271 Helicase conserved C-terminal domain AL541_RS17865 PF03734 L,D-transpeptidase catalytic domain AL541_RS17865 PF01476 LysM domain AL541_RS17865 PF17969 L,D-transpeptidase C-terminal domain AL541_RS17870 PF03441 FAD binding domain of DNA photolyase AL541_RS17870 PF00875 DNA photolyase AL541_RS17875 PF13411 MerR HTH family regulatory protein AL541_RS17880 PF08349 Protein of unknown function (DUF1722) AL541_RS17885 PF01048 Phosphorylase superfamily AL541_RS17900 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS17905 PF11742 Protein of unknown function (DUF3302) AL541_RS17910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_RS17910 PF00529 HlyD membrane-fusion protein of T1SS AL541_RS17915 PF07155 ECF-type riboflavin transporter, S component AL541_RS17920 PF00005 ABC transporter AL541_RS17920 PF12558 ATP-binding cassette cobalt transporter AL541_RS17940 PF13237 4Fe-4S dicluster domain AL541_RS17940 PF12801 4Fe-4S binding domain AL541_RS17945 PF12800 4Fe-4S binding domain AL541_RS17945 PF12838 4Fe-4S dicluster domain AL541_RS17950 PF00583 Acetyltransferase (GNAT) family AL541_RS17965 PF07238 PilZ domain AL541_RS17965 PF12945 Flagellar protein YcgR AL541_RS17970 PF13609 Gram-negative porin AL541_RS17975 PF17200 Single Cache domain 2 AL541_RS17975 PF00672 HAMP domain AL541_RS17975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS17980 PF05362 Lon protease (S16) C-terminal proteolytic domain AL541_RS17980 PF13654 AAA domain AL541_RS17990 PF00005 ABC transporter AL541_RS17990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS17995 PF00326 Prolyl oligopeptidase family AL541_RS17995 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL541_RS18000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS18000 PF03466 LysR substrate binding domain AL541_RS18005 PF02652 L-lactate permease AL541_RS18010 PF01070 FMN-dependent dehydrogenase AL541_RS18020 PF00924 Mechanosensitive ion channel AL541_RS18025 PF00194 Eukaryotic-type carbonic anhydrase AL541_RS18055 PF08240 Alcohol dehydrogenase GroES-like domain AL541_RS18055 PF00107 Zinc-binding dehydrogenase AL541_RS18060 PF00155 Aminotransferase class I and II AL541_RS18065 PF00563 EAL domain AL541_RS18065 PF13188 PAS domain AL541_RS18065 PF03707 Bacterial signalling protein N terminal repeat AL541_RS18065 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS18080 PF00080 Copper/zinc superoxide dismutase (SODC) AL541_RS18085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS18085 PF13426 PAS domain AL541_RS18085 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS18085 PF08448 PAS fold AL541_RS18085 PF00072 Response regulator receiver domain AL541_RS18090 PF00072 Response regulator receiver domain AL541_RS18090 PF00486 Transcriptional regulatory protein, C terminal AL541_RS18110 PF03466 LysR substrate binding domain AL541_RS18110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS18115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_RS18150 PF03466 LysR substrate binding domain AL541_RS18150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS18165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL541_RS18165 PF18269 T3SS EscN ATPase C-terminal domain AL541_RS18175 PF14841 FliG middle domain AL541_RS18175 PF14842 FliG N-terminal domain AL541_RS18175 PF01706 FliG C-terminal domain AL541_RS18180 PF08345 Flagellar M-ring protein C-terminal AL541_RS18180 PF01514 Secretory protein of YscJ/FliF family AL541_RS18185 PF02049 Flagellar hook-basal body complex protein FliE AL541_RS18190 PF02954 Bacterial regulatory protein, Fis family AL541_RS18190 PF00158 Sigma-54 interaction domain AL541_RS18190 PF00072 Response regulator receiver domain AL541_RS18205 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL541_RS18210 PF00813 FliP family AL541_RS18215 PF01313 Bacterial export proteins, family 3 AL541_RS18220 PF01311 Bacterial export proteins, family 1 AL541_RS18225 PF01312 FlhB HrpN YscU SpaS Family AL541_RS18230 PF00771 FHIPEP family AL541_RS18240 PF00669 Bacterial flagellin N-terminal helical region AL541_RS18240 PF00700 Bacterial flagellin C-terminal helical region AL541_RS18250 PF07196 Flagellin hook IN motif AL541_RS18250 PF07195 Flagellar hook-associated protein 2 C-terminus AL541_RS18250 PF02465 Flagellar hook-associated protein 2 N-terminus AL541_RS18255 PF02561 Flagellar protein FliS AL541_RS18270 PF03748 Flagellar basal body-associated protein FliL AL541_RS18275 PF04542 Sigma-70 region 2 AL541_RS18275 PF04545 Sigma-70, region 4 AL541_RS18280 PF01618 MotA/TolQ/ExbB proton channel family AL541_RS18285 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL541_RS18285 PF00691 OmpA family AL541_RS18300 PF08000 Bacterial PH domain AL541_RS18320 PF01228 Glycine radical AL541_RS18320 PF02901 Pyruvate formate lyase-like AL541_RS18325 PF04055 Radical SAM superfamily AL541_RS18330 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL541_RS18350 PF00672 HAMP domain AL541_RS18350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS18350 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS18355 PF00072 Response regulator receiver domain AL541_RS18355 PF00486 Transcriptional regulatory protein, C terminal AL541_RS18380 PF07690 Major Facilitator Superfamily AL541_RS18385 PF03466 LysR substrate binding domain AL541_RS18385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS18390 PF00892 EamA-like transporter family AL541_RS18415 PF13533 Biotin-lipoyl like AL541_RS18425 PF01594 AI-2E family transporter AL541_RS18430 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL541_RS18440 PF00175 Oxidoreductase NAD-binding domain AL541_RS18440 PF00970 Oxidoreductase FAD-binding domain AL541_RS18450 PF09905 DNA-binding protein VF530 AL541_RS18455 PF03466 LysR substrate binding domain AL541_RS18455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS18465 PF00881 Nitroreductase family AL541_RS18470 PF12833 Helix-turn-helix domain AL541_RS18470 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL541_RS18475 PF00128 Alpha amylase, catalytic domain AL541_RS18475 PF00686 Starch binding domain AL541_RS18480 PF07943 Penicillin-binding protein 5, C-terminal domain AL541_RS18480 PF00768 D-alanyl-D-alanine carboxypeptidase AL541_RS18485 PF00561 alpha/beta hydrolase fold AL541_RS18490 PF17773 UPF0176 acylphosphatase like domain AL541_RS18490 PF00581 Rhodanese-like domain AL541_RS18500 PF03441 FAD binding domain of DNA photolyase AL541_RS18500 PF00875 DNA photolyase AL541_RS18505 PF02469 Fasciclin domain AL541_RS18510 PF18416 N-acetylglucosamine binding protein domain 2 AL541_RS18510 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL541_RS18515 PF01734 Patatin-like phospholipase AL541_RS18520 PF01914 MarC family integral membrane protein AL541_RS18525 PF00881 Nitroreductase family AL541_RS18530 PF02563 Polysaccharide biosynthesis/export protein AL541_RS18530 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL541_RS18530 PF10531 SLBB domain AL541_RS18535 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL541_RS18540 PF02706 Chain length determinant protein AL541_RS18540 PF13614 AAA domain AL541_RS18540 PF13807 G-rich domain on putative tyrosine kinase AL541_RS18550 PF08803 Putative mono-oxygenase ydhR AL541_RS18555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS18555 PF03466 LysR substrate binding domain AL541_RS18565 PF00375 Sodium:dicarboxylate symporter family AL541_RS18580 PF06803 Protein of unknown function (DUF1232) AL541_RS18585 PF07687 Peptidase dimerisation domain AL541_RS18585 PF01546 Peptidase family M20/M25/M40 AL541_RS18590 PF07670 Nucleoside recognition AL541_RS18595 PF07670 Nucleoside recognition AL541_RS18610 PF00128 Alpha amylase, catalytic domain AL541_RS18615 PF00912 Transglycosylase AL541_RS18620 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL541_RS18620 PF02806 Alpha amylase, C-terminal all-beta domain AL541_RS18620 PF00128 Alpha amylase, catalytic domain AL541_RS18625 PF02446 4-alpha-glucanotransferase AL541_RS18630 PF00343 Carbohydrate phosphorylase AL541_RS18635 PF17874 MalT-like TPR region AL541_RS18635 PF00196 Bacterial regulatory proteins, luxR family AL541_RS18650 PF02630 SCO1/SenC AL541_RS18655 PF02378 Phosphotransferase system, EIIC AL541_RS18655 PF00367 phosphotransferase system, EIIB AL541_RS18660 PF03193 RsgA GTPase AL541_RS18665 PF00375 Sodium:dicarboxylate symporter family AL541_RS18670 PF08543 Phosphomethylpyrimidine kinase AL541_RS18685 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL541_RS18685 PF18494 Pullulanase Ins domain AL541_RS18685 PF11852 Domain of unknown function (DUF3372) AL541_RS18685 PF17967 Pullulanase N2 domain AL541_RS18685 PF03714 Bacterial pullanase-associated domain AL541_RS18690 PF04231 Endonuclease I AL541_RS18695 PF00128 Alpha amylase, catalytic domain AL541_RS18695 PF16657 Maltogenic Amylase, C-terminal domain AL541_RS18695 PF02903 Alpha amylase, N-terminal ig-like domain AL541_RS18710 PF02264 LamB porin AL541_RS18715 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL541_RS18715 PF00128 Alpha amylase, catalytic domain AL541_RS18720 PF03313 Serine dehydratase alpha chain AL541_RS18720 PF03315 Serine dehydratase beta chain AL541_RS18725 PF00474 Sodium:solute symporter family AL541_RS18730 PF07690 Major Facilitator Superfamily AL541_RS18745 PF12697 Alpha/beta hydrolase family AL541_RS18760 PF00815 Histidinol dehydrogenase AL541_RS18765 PF03328 HpcH/HpaI aldolase/citrate lyase family AL541_RS18770 PF00356 Bacterial regulatory proteins, lacI family AL541_RS18775 PF03480 Bacterial extracellular solute-binding protein, family 7 AL541_RS18785 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL541_RS18785 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL541_RS18800 PF00474 Sodium:solute symporter family AL541_RS18805 PF00356 Bacterial regulatory proteins, lacI family AL541_RS18810 PF02796 Helix-turn-helix domain of resolvase AL541_RS18810 PF00239 Resolvase, N terminal domain AL541_RS18815 PF07690 Major Facilitator Superfamily AL541_RS18830 PF04225 Opacity-associated protein A LysM-like domain AL541_RS18830 PF01551 Peptidase family M23 AL541_RS18840 PF00675 Insulinase (Peptidase family M16) AL541_RS18840 PF05193 Peptidase M16 inactive domain AL541_RS18845 PF00672 HAMP domain AL541_RS18845 PF17200 Single Cache domain 2 AL541_RS18845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS18850 PF00005 ABC transporter AL541_RS18855 PF01032 FecCD transport family AL541_RS18860 PF01032 FecCD transport family AL541_RS18865 PF01497 Periplasmic binding protein AL541_RS18870 PF07715 TonB-dependent Receptor Plug Domain AL541_RS18870 PF07660 Secretin and TonB N terminus short domain AL541_RS18870 PF00593 TonB dependent receptor AL541_RS18875 PF07715 TonB-dependent Receptor Plug Domain AL541_RS18875 PF00593 TonB dependent receptor AL541_RS18880 PF02655 ATP-grasp domain AL541_RS18880 PF00206 Lyase AL541_RS18885 PF04183 IucA / IucC family AL541_RS18885 PF06276 Ferric iron reductase FhuF-like transporter AL541_RS18895 PF06276 Ferric iron reductase FhuF-like transporter AL541_RS18895 PF04183 IucA / IucC family AL541_RS18900 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL541_RS18900 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL541_RS18905 PF01547 Bacterial extracellular solute-binding protein AL541_RS18910 PF08521 Two-component sensor kinase N-terminal AL541_RS18910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS18910 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS18915 PF00486 Transcriptional regulatory protein, C terminal AL541_RS18915 PF00072 Response regulator receiver domain AL541_RS18925 PF02378 Phosphotransferase system, EIIC AL541_RS18925 PF00367 phosphotransferase system, EIIB AL541_RS18935 PF01136 Peptidase family U32 AL541_RS18945 PF00005 ABC transporter AL541_RS18950 PF02687 FtsX-like permease family AL541_RS18950 PF12704 MacB-like periplasmic core domain AL541_RS18995 PF02566 OsmC-like protein AL541_RS19000 PF01047 MarR family AL541_RS19005 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL541_RS19005 PF00578 AhpC/TSA family AL541_RS19010 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS19010 PF13192 Thioredoxin domain AL541_RS19025 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AL541_RS19040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS19040 PF03466 LysR substrate binding domain AL541_RS19050 PF01965 DJ-1/PfpI family AL541_RS19050 PF12833 Helix-turn-helix domain AL541_RS19055 PF08281 Sigma-70, region 4 AL541_RS19055 PF04542 Sigma-70 region 2 AL541_RS19075 PF03475 3-alpha domain AL541_RS19075 PF03473 MOSC domain AL541_RS19080 PF00271 Helicase conserved C-terminal domain AL541_RS19080 PF00270 DEAD/DEAH box helicase AL541_RS19090 PF00005 ABC transporter AL541_RS19090 PF00664 ABC transporter transmembrane region AL541_RS19100 PF01037 Lrp/AsnC ligand binding domain AL541_RS19130 PF00474 Sodium:solute symporter family AL541_RS19140 PF00171 Aldehyde dehydrogenase family AL541_RS19140 PF01619 Proline dehydrogenase AL541_RS19140 PF14850 DNA-binding domain of Proline dehydrogenase AL541_RS19140 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL541_RS19145 PF12833 Helix-turn-helix domain AL541_RS19155 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL541_RS19155 PF01243 Pyridoxamine 5'-phosphate oxidase AL541_RS19160 PF02743 Cache domain AL541_RS19160 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS19160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS19165 PF02954 Bacterial regulatory protein, Fis family AL541_RS19165 PF00072 Response regulator receiver domain AL541_RS19165 PF00158 Sigma-54 interaction domain AL541_RS19170 PF00529 HlyD membrane-fusion protein of T1SS AL541_RS19185 PF00005 ABC transporter AL541_RS19185 PF03412 Peptidase C39 family AL541_RS19185 PF00664 ABC transporter transmembrane region AL541_RS19195 PF03358 NADPH-dependent FMN reductase AL541_RS19200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_RS19205 PF00246 Zinc carboxypeptidase AL541_RS19210 PF01418 Helix-turn-helix domain, rpiR family AL541_RS19210 PF01380 SIS domain AL541_RS19220 PF01380 SIS domain AL541_RS19225 PF00367 phosphotransferase system, EIIB AL541_RS19225 PF02378 Phosphotransferase system, EIIC AL541_RS19230 PF00267 Gram-negative porin AL541_RS19235 PF03575 Peptidase family S51 AL541_RS19240 PF03466 LysR substrate binding domain AL541_RS19240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS19245 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_RS19255 PF05127 Helicase AL541_RS19255 PF13718 GNAT acetyltransferase 2 AL541_RS19260 PF02195 ParB-like nuclease domain AL541_RS19260 PF08775 ParB family AL541_RS19265 PF18607 ParA helix turn helix domain AL541_RS19265 PF13614 AAA domain AL541_RS19280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS19280 PF00005 ABC transporter AL541_RS19285 PF00005 ABC transporter AL541_RS19285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL541_RS19295 PF08719 Domain of unknown function (DUF1768) AL541_RS19295 PF00925 GTP cyclohydrolase II AL541_RS19305 PF00072 Response regulator receiver domain AL541_RS19305 PF01627 Hpt domain AL541_RS19305 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS19305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS19305 PF00672 HAMP domain AL541_RS19305 PF17149 Periplasmic sensor domain found in signal transduction proteins AL541_RS19315 PF01709 Transcriptional regulator AL541_RS19320 PF01098 Cell cycle protein AL541_RS19330 PF00005 ABC transporter AL541_RS19350 PF06580 Histidine kinase AL541_RS19350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS19350 PF07694 5TMR of 5TMR-LYT AL541_RS19350 PF13492 GAF domain AL541_RS19355 PF04397 LytTr DNA-binding domain AL541_RS19355 PF00072 Response regulator receiver domain AL541_RS19360 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL541_RS19365 PF17200 Single Cache domain 2 AL541_RS19365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS19365 PF00672 HAMP domain AL541_RS19385 PF03616 Sodium/glutamate symporter AL541_RS19395 PF00005 ABC transporter AL541_RS19400 PF00155 Aminotransferase class I and II AL541_RS19400 PF00392 Bacterial regulatory proteins, gntR family AL541_RS19405 PF03616 Sodium/glutamate symporter AL541_RS19415 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL541_RS19430 PF03466 LysR substrate binding domain AL541_RS19430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS19435 PF17954 Quercetinase C-terminal cupin domain AL541_RS19435 PF02678 Pirin AL541_RS19440 PF07681 DoxX AL541_RS19450 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL541_RS19450 PF12833 Helix-turn-helix domain AL541_RS19450 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL541_RS19450 PF02805 Metal binding domain of Ada AL541_RS19455 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL541_RS19455 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL541_RS19465 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL541_RS19475 PF03600 Citrate transporter AL541_RS19490 PF12697 Alpha/beta hydrolase family AL541_RS19495 PF00704 Glycosyl hydrolases family 18 AL541_RS19495 PF08329 Chitinase A, N-terminal domain AL541_RS19505 PF06865 Pyrimidine/purine nucleoside phosphorylase AL541_RS19515 PF00563 EAL domain AL541_RS19515 PF03707 Bacterial signalling protein N terminal repeat AL541_RS19515 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS19520 PF01554 MatE AL541_RS19525 PF00849 RNA pseudouridylate synthase AL541_RS19540 PF03466 LysR substrate binding domain AL541_RS19540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS19555 PF17152 Periplasmic sensor domain AL541_RS19555 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS19565 PF00756 Putative esterase AL541_RS19570 PF00107 Zinc-binding dehydrogenase AL541_RS19570 PF08240 Alcohol dehydrogenase GroES-like domain AL541_RS19575 PF00797 N-acetyltransferase AL541_RS19580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS19580 PF03466 LysR substrate binding domain AL541_RS19585 PF04954 Siderophore-interacting protein AL541_RS19585 PF08021 Siderophore-interacting FAD-binding domain AL541_RS19590 PF01810 LysE type translocator AL541_RS19595 PF01037 Lrp/AsnC ligand binding domain AL541_RS19615 PF13599 Pentapeptide repeats (9 copies) AL541_RS19620 PF03922 OmpW family AL541_RS19625 PF13533 Biotin-lipoyl like AL541_RS19630 PF07690 Major Facilitator Superfamily AL541_RS19640 PF12706 Beta-lactamase superfamily domain AL541_RS19645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_RS19680 PF13556 PucR C-terminal helix-turn-helix domain AL541_RS19680 PF05651 Putative sugar diacid recognition AL541_RS19680 PF17853 GGDEF-like domain AL541_RS19685 PF02447 GntP family permease AL541_RS19690 PF02595 Glycerate kinase family AL541_RS19695 PF00155 Aminotransferase class I and II AL541_RS19695 PF00392 Bacterial regulatory proteins, gntR family AL541_RS19715 PF00583 Acetyltransferase (GNAT) family AL541_RS19735 PF13302 Acetyltransferase (GNAT) domain AL541_RS19740 PF03264 NapC/NirT cytochrome c family, N-terminal region AL541_RS19745 PF00384 Molybdopterin oxidoreductase AL541_RS19745 PF18364 Molybdopterin oxidoreductase N-terminal domain AL541_RS19745 PF01568 Molydopterin dinucleotide binding domain AL541_RS19755 PF02581 Thiamine monophosphate synthase AL541_RS19760 PF02110 Hydroxyethylthiazole kinase family AL541_RS19765 PF03070 TENA/THI-4/PQQC family AL541_RS19770 PF09084 NMT1/THI5 like AL541_RS19775 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS19780 PF00005 ABC transporter AL541_RS19785 PF08543 Phosphomethylpyrimidine kinase AL541_RS19790 PF01523 Putative modulator of DNA gyrase AL541_RS19795 PF01523 Putative modulator of DNA gyrase AL541_RS19800 PF04013 Putative SAM-dependent RNA methyltransferase AL541_RS19855 PF10928 Protein of unknown function (DUF2810) AL541_RS19860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL541_RS19860 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL541_RS19870 PF03009 Glycerophosphoryl diester phosphodiesterase family AL541_RS19875 PF00072 Response regulator receiver domain AL541_RS19875 PF00486 Transcriptional regulatory protein, C terminal AL541_RS19880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS19880 PF00672 HAMP domain AL541_RS19880 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS19885 PF07715 TonB-dependent Receptor Plug Domain AL541_RS19885 PF00593 TonB dependent receptor AL541_RS19895 PF01618 MotA/TolQ/ExbB proton channel family AL541_RS19900 PF01618 MotA/TolQ/ExbB proton channel family AL541_RS19905 PF02472 Biopolymer transport protein ExbD/TolR AL541_RS19955 PF01297 Zinc-uptake complex component A periplasmic AL541_RS19960 PF00005 ABC transporter AL541_RS19965 PF00950 ABC 3 transport family AL541_RS19980 PF00326 Prolyl oligopeptidase family AL541_RS19980 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL541_RS19985 PF07690 Major Facilitator Superfamily AL541_RS19990 PF00491 Arginase family AL541_RS19995 PF17810 Arginine decarboxylase helical bundle domain AL541_RS19995 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL541_RS19995 PF17944 Arginine decarboxylase C-terminal helical extension AL541_RS20000 PF00753 Metallo-beta-lactamase superfamily AL541_RS20005 PF18030 RimK PreATP-grasp domain AL541_RS20005 PF08443 RimK-like ATP-grasp domain AL541_RS20010 PF08443 RimK-like ATP-grasp domain AL541_RS20010 PF18030 RimK PreATP-grasp domain AL541_RS20025 PF12706 Beta-lactamase superfamily domain AL541_RS20035 PF03466 LysR substrate binding domain AL541_RS20035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS20050 PF00232 Glycosyl hydrolase family 1 AL541_RS20055 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS20055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS20060 PF00158 Sigma-54 interaction domain AL541_RS20060 PF00072 Response regulator receiver domain AL541_RS20060 PF02954 Bacterial regulatory protein, Fis family AL541_RS20065 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS20070 PF05525 Branched-chain amino acid transport protein AL541_RS20090 PF01266 FAD dependent oxidoreductase AL541_RS20095 PF00182 Chitinase class I AL541_RS20115 PF02322 Cytochrome bd terminal oxidase subunit II AL541_RS20120 PF01654 Cytochrome bd terminal oxidase subunit I AL541_RS20125 PF03116 NQR2, RnfD, RnfE family AL541_RS20130 PF01212 Beta-eliminating lyase AL541_RS20150 PF07662 Na+ dependent nucleoside transporter C-terminus AL541_RS20150 PF01773 Na+ dependent nucleoside transporter N-terminus AL541_RS20150 PF07670 Nucleoside recognition AL541_RS20165 PF05230 MASE2 domain AL541_RS20165 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS20180 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS20185 PF03441 FAD binding domain of DNA photolyase AL541_RS20185 PF00875 DNA photolyase AL541_RS20190 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AL541_RS20205 PF01641 SelR domain AL541_RS20205 PF01625 Peptide methionine sulfoxide reductase AL541_RS20210 PF02566 OsmC-like protein AL541_RS20215 PF12464 Maltose acetyltransferase AL541_RS20215 PF14602 Hexapeptide repeat of succinyl-transferase AL541_RS20250 PF03466 LysR substrate binding domain AL541_RS20250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS20255 PF13419 Haloacid dehalogenase-like hydrolase AL541_RS20270 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL541_RS20275 PF00194 Eukaryotic-type carbonic anhydrase AL541_RS20280 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL541_RS20290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_RS20295 PF02687 FtsX-like permease family AL541_RS20295 PF00005 ABC transporter AL541_RS20295 PF12704 MacB-like periplasmic core domain AL541_RS20300 PF02321 Outer membrane efflux protein AL541_RS20310 PF00440 Bacterial regulatory proteins, tetR family AL541_RS20315 PF00657 GDSL-like Lipase/Acylhydrolase AL541_RS20320 PF00082 Subtilase family AL541_RS20320 PF05922 Peptidase inhibitor I9 AL541_RS20330 PF03611 PTS system sugar-specific permease component AL541_RS20340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL541_RS20345 PF00356 Bacterial regulatory proteins, lacI family AL541_RS20350 PF13419 Haloacid dehalogenase-like hydrolase AL541_RS20355 PF00202 Aminotransferase class-III AL541_RS20360 PF00266 Aminotransferase class-V AL541_RS20370 PF00005 ABC transporter AL541_RS20375 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS20380 PF07702 UTRA domain AL541_RS20380 PF00392 Bacterial regulatory proteins, gntR family AL541_RS20395 PF04393 Protein of unknown function (DUF535) AL541_RS20405 PF01266 FAD dependent oxidoreductase AL541_RS20410 PF00246 Zinc carboxypeptidase AL541_RS20410 PF18027 Cytosolic carboxypeptidase N-terminal domain AL541_RS20415 PF01389 OmpA-like transmembrane domain AL541_RS20415 PF00691 OmpA family AL541_RS20420 PF03466 LysR substrate binding domain AL541_RS20420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS20425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS20425 PF03466 LysR substrate binding domain AL541_RS20435 PF03313 Serine dehydratase alpha chain AL541_RS20435 PF03315 Serine dehydratase beta chain AL541_RS20455 PF00133 tRNA synthetases class I (I, L, M and V) AL541_RS20455 PF08264 Anticodon-binding domain of tRNA AL541_RS20460 PF01464 Transglycosylase SLT domain AL541_RS20460 PF01476 LysM domain AL541_RS20480 PF00460 Flagella basal body rod protein AL541_RS20485 PF00460 Flagella basal body rod protein AL541_RS20485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_RS20490 PF03963 Flagellar hook capping protein - N-terminal region AL541_RS20490 PF13860 FlgD Ig-like domain AL541_RS20490 PF13861 FlgD Tudor-like domain AL541_RS20495 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_RS20495 PF00460 Flagella basal body rod protein AL541_RS20495 PF07559 Flagellar basal body protein FlaE AL541_RS20500 PF00460 Flagella basal body rod protein AL541_RS20500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_RS20505 PF00460 Flagella basal body rod protein AL541_RS20505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_RS20510 PF02107 Flagellar L-ring protein AL541_RS20515 PF02119 Flagellar P-ring protein AL541_RS20520 PF10135 Rod binding protein AL541_RS20520 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL541_RS20525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL541_RS20525 PF00460 Flagella basal body rod protein AL541_RS20530 PF00669 Bacterial flagellin N-terminal helical region AL541_RS20550 PF01070 FMN-dependent dehydrogenase AL541_RS20565 PF00581 Rhodanese-like domain AL541_RS20570 PF00166 Chaperonin 10 Kd subunit AL541_RS20575 PF00118 TCP-1/cpn60 chaperonin family AL541_RS20585 PF01810 LysE type translocator AL541_RS20605 PF08359 YsiA-like protein, C-terminal region AL541_RS20605 PF00440 Bacterial regulatory proteins, tetR family AL541_RS20610 PF12833 Helix-turn-helix domain AL541_RS20615 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AL541_RS20620 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AL541_RS20625 PF13520 Amino acid permease AL541_RS20630 PF03060 Nitronate monooxygenase AL541_RS20635 PF01641 SelR domain AL541_RS20635 PF01625 Peptide methionine sulfoxide reductase AL541_RS20640 PF00455 DeoR C terminal sensor domain AL541_RS20640 PF08220 DeoR-like helix-turn-helix domain AL541_RS20655 PF00857 Isochorismatase family AL541_RS20665 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL541_RS20665 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL541_RS20690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS20690 PF03466 LysR substrate binding domain AL541_RS20705 PF06629 MltA-interacting protein MipA AL541_RS20710 PF04170 NlpE N-terminal domain AL541_RS20710 PF17185 NlpE C-terminal OB domain AL541_RS20715 PF00571 CBS domain AL541_RS20715 PF00005 ABC transporter AL541_RS20720 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS20730 PF02001 Protein of unknown function DUF134 AL541_RS20755 PF03144 Elongation factor Tu domain 2 AL541_RS20755 PF00009 Elongation factor Tu GTP binding domain AL541_RS20755 PF03764 Elongation factor G, domain IV AL541_RS20755 PF14492 Elongation Factor G, domain II AL541_RS20755 PF00679 Elongation factor G C-terminus AL541_RS20765 PF13378 Enolase C-terminal domain-like AL541_RS20765 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AL541_RS20775 PF03466 LysR substrate binding domain AL541_RS20775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS20790 PF00376 MerR family regulatory protein AL541_RS20790 PF09278 MerR, DNA binding AL541_RS20810 PF00398 Ribosomal RNA adenine dimethylase AL541_RS20815 PF13091 PLD-like domain AL541_RS20825 PF00873 AcrB/AcrD/AcrF family AL541_RS20845 PF00873 AcrB/AcrD/AcrF family AL541_RS20865 PF00005 ABC transporter AL541_RS20865 PF08402 TOBE domain AL541_RS20890 PF07702 UTRA domain AL541_RS20890 PF00392 Bacterial regulatory proteins, gntR family AL541_RS20895 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_RS20900 PF00703 Glycosyl hydrolases family 2 AL541_RS20900 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL541_RS20900 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL541_RS20900 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AL541_RS20915 PF13416 Bacterial extracellular solute-binding protein AL541_RS20920 PF00579 tRNA synthetases class I (W and Y) AL541_RS20925 PF00072 Response regulator receiver domain AL541_RS20925 PF00196 Bacterial regulatory proteins, luxR family AL541_RS20935 PF02896 PEP-utilising enzyme, TIM barrel domain AL541_RS20935 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL541_RS20935 PF00391 PEP-utilising enzyme, mobile domain AL541_RS20940 PF03618 Kinase/pyrophosphorylase AL541_RS20945 PF00710 Asparaginase, N-terminal AL541_RS20945 PF17763 Glutaminase/Asparaginase C-terminal domain AL541_RS20950 PF00709 Adenylosuccinate synthetase AL541_RS20955 PF03466 LysR substrate binding domain AL541_RS20955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS20970 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AL541_RS20975 PF00202 Aminotransferase class-III AL541_RS20980 PF00171 Aldehyde dehydrogenase family AL541_RS20985 PF01037 Lrp/AsnC ligand binding domain AL541_RS20990 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL541_RS20995 PF01321 Creatinase/Prolidase N-terminal domain AL541_RS20995 PF00557 Metallopeptidase family M24 AL541_RS21000 PF00155 Aminotransferase class I and II AL541_RS21000 PF00392 Bacterial regulatory proteins, gntR family AL541_RS21020 PF08240 Alcohol dehydrogenase GroES-like domain AL541_RS21020 PF00107 Zinc-binding dehydrogenase AL541_RS21025 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL541_RS21035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS21035 PF03466 LysR substrate binding domain AL541_RS21040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS21040 PF03466 LysR substrate binding domain AL541_RS21050 PF00271 Helicase conserved C-terminal domain AL541_RS21050 PF00270 DEAD/DEAH box helicase AL541_RS21080 PF00155 Aminotransferase class I and II AL541_RS21085 PF12833 Helix-turn-helix domain AL541_RS21085 PF01497 Periplasmic binding protein AL541_RS21090 PF03466 LysR substrate binding domain AL541_RS21090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS21095 PF00106 short chain dehydrogenase AL541_RS21130 PF04151 Bacterial pre-peptidase C-terminal domain AL541_RS21130 PF00082 Subtilase family AL541_RS21130 PF05922 Peptidase inhibitor I9 AL541_RS21140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS21140 PF03466 LysR substrate binding domain AL541_RS21145 PF07715 TonB-dependent Receptor Plug Domain AL541_RS21145 PF00593 TonB dependent receptor AL541_RS21155 PF11471 Maltoporin periplasmic N-terminal extension AL541_RS21155 PF02264 LamB porin AL541_RS21160 PF00356 Bacterial regulatory proteins, lacI family AL541_RS21165 PF02378 Phosphotransferase system, EIIC AL541_RS21165 PF00367 phosphotransferase system, EIIB AL541_RS21170 PF00294 pfkB family carbohydrate kinase AL541_RS21175 PF08244 Glycosyl hydrolases family 32 C terminal AL541_RS21175 PF00251 Glycosyl hydrolases family 32 N-terminal domain AL541_RS21180 PF01872 RibD C-terminal domain AL541_RS21185 PF00440 Bacterial regulatory proteins, tetR family AL541_RS21185 PF02909 Tetracyclin repressor-like, C-terminal domain AL541_RS21190 PF02798 Glutathione S-transferase, N-terminal domain AL541_RS21200 PF07943 Penicillin-binding protein 5, C-terminal domain AL541_RS21200 PF00768 D-alanyl-D-alanine carboxypeptidase AL541_RS21210 PF08534 Redoxin AL541_RS21210 PF00462 Glutaredoxin AL541_RS21215 PF00962 Adenosine/AMP deaminase AL541_RS21230 PF00313 'Cold-shock' DNA-binding domain AL541_RS21235 PF05726 Pirin C-terminal cupin domain AL541_RS21235 PF02678 Pirin AL541_RS21240 PF01734 Patatin-like phospholipase AL541_RS21255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL541_RS21260 PF00884 Sulfatase AL541_RS21260 PF08019 Phosphoethanolamine transferase EptA/EptB AL541_RS21265 PF01219 Prokaryotic diacylglycerol kinase AL541_RS21275 PF00672 HAMP domain AL541_RS21275 PF16527 Two-component sensor protein CpxA, periplasmic domain AL541_RS21275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS21275 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS21280 PF00072 Response regulator receiver domain AL541_RS21280 PF00486 Transcriptional regulatory protein, C terminal AL541_RS21295 PF01323 DSBA-like thioredoxin domain AL541_RS21310 PF00255 Glutathione peroxidase AL541_RS21315 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL541_RS21325 PF07690 Major Facilitator Superfamily AL541_RS21340 PF01966 HD domain AL541_RS21345 PF07969 Amidohydrolase family AL541_RS21350 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AL541_RS21355 PF03448 MgtE intracellular N domain AL541_RS21355 PF00571 CBS domain AL541_RS21355 PF01769 Divalent cation transporter AL541_RS21360 PF03109 ABC1 family AL541_RS21365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_RS21365 PF00529 HlyD membrane-fusion protein of T1SS AL541_RS21375 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL541_RS21375 PF12833 Helix-turn-helix domain AL541_RS21390 PF00486 Transcriptional regulatory protein, C terminal AL541_RS21390 PF00072 Response regulator receiver domain AL541_RS21395 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS21395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS21395 PF00672 HAMP domain AL541_RS21395 PF16527 Two-component sensor protein CpxA, periplasmic domain AL541_RS21405 PF00155 Aminotransferase class I and II AL541_RS21405 PF00392 Bacterial regulatory proteins, gntR family AL541_RS21410 PF13520 Amino acid permease AL541_RS21425 PF03466 LysR substrate binding domain AL541_RS21425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS21440 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL541_RS21440 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_RS21445 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL541_RS21445 PF00072 Response regulator receiver domain AL541_RS21445 PF01627 Hpt domain AL541_RS21445 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS21445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS21445 PF00672 HAMP domain AL541_RS21450 PF01554 MatE AL541_RS21455 PF04363 Protein of unknown function (DUF496) AL541_RS21465 PF04337 Protein of unknown function, DUF480 AL541_RS21470 PF01541 GIY-YIG catalytic domain AL541_RS21480 PF13407 Periplasmic binding protein domain AL541_RS21485 PF00072 Response regulator receiver domain AL541_RS21485 PF09308 LuxQ, periplasmic AL541_RS21485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS21485 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS21490 PF01047 MarR family AL541_RS21495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_RS21495 PF00529 HlyD membrane-fusion protein of T1SS AL541_RS21515 PF01037 Lrp/AsnC ligand binding domain AL541_RS21545 PF02355 Protein export membrane protein AL541_RS21545 PF13721 SecD export protein N-terminal TM region AL541_RS21545 PF07549 SecD/SecF GG Motif AL541_RS21550 PF02355 Protein export membrane protein AL541_RS21550 PF07549 SecD/SecF GG Motif AL541_RS21560 PF01810 LysE type translocator AL541_RS21565 PF00106 short chain dehydrogenase AL541_RS21570 PF02803 Thiolase, C-terminal domain AL541_RS21570 PF00108 Thiolase, N-terminal domain AL541_RS21580 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL541_RS21590 PF03264 NapC/NirT cytochrome c family, N-terminal region AL541_RS21595 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL541_RS21600 PF01568 Molydopterin dinucleotide binding domain AL541_RS21600 PF00384 Molybdopterin oxidoreductase AL541_RS21600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL541_RS21610 PF13187 4Fe-4S dicluster domain AL541_RS21610 PF12838 4Fe-4S dicluster domain AL541_RS21615 PF07730 Histidine kinase AL541_RS21615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS21615 PF00672 HAMP domain AL541_RS21615 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL541_RS21620 PF00196 Bacterial regulatory proteins, luxR family AL541_RS21620 PF00072 Response regulator receiver domain AL541_RS21635 PF07687 Peptidase dimerisation domain AL541_RS21635 PF01546 Peptidase family M20/M25/M40 AL541_RS21640 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL541_RS21645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_RS21650 PF00873 AcrB/AcrD/AcrF family AL541_RS21655 PF00672 HAMP domain AL541_RS21655 PF12729 Four helix bundle sensory module for signal transduction AL541_RS21655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS21660 PF00472 RF-1 domain AL541_RS21665 PF13419 Haloacid dehalogenase-like hydrolase AL541_RS21670 PF00691 OmpA family AL541_RS21670 PF01389 OmpA-like transmembrane domain AL541_RS21680 PF00793 DAHP synthetase I family AL541_RS21685 PF07690 Major Facilitator Superfamily AL541_RS21690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS21690 PF12729 Four helix bundle sensory module for signal transduction AL541_RS21690 PF00672 HAMP domain AL541_RS21695 PF00456 Transketolase, thiamine diphosphate binding domain AL541_RS21695 PF02780 Transketolase, C-terminal domain AL541_RS21695 PF02779 Transketolase, pyrimidine binding domain AL541_RS21700 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL541_RS21720 PF00581 Rhodanese-like domain AL541_RS21735 PF00899 ThiF family AL541_RS21740 PF03454 MoeA C-terminal region (domain IV) AL541_RS21740 PF03453 MoeA N-terminal region (domain I and II) AL541_RS21740 PF00994 Probable molybdopterin binding domain AL541_RS21745 PF01227 GTP cyclohydrolase I AL541_RS21755 PF00654 Voltage gated chloride channel AL541_RS21770 PF00248 Aldo/keto reductase family AL541_RS21775 PF00072 Response regulator receiver domain AL541_RS21785 PF03853 YjeF-related protein N-terminus AL541_RS21785 PF01256 Carbohydrate kinase AL541_RS21790 PF00478 IMP dehydrogenase / GMP reductase domain AL541_RS21815 PF07971 Glycosyl hydrolase family 92 AL541_RS21815 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL541_RS21820 PF07971 Glycosyl hydrolase family 92 AL541_RS21820 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL541_RS21830 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL541_RS21830 PF07971 Glycosyl hydrolase family 92 AL541_RS21835 PF07971 Glycosyl hydrolase family 92 AL541_RS21835 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL541_RS21850 PF01238 Phosphomannose isomerase type I AL541_RS21855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL541_RS21855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL541_RS21860 PF12833 Helix-turn-helix domain AL541_RS21870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL541_RS21900 PF01476 LysM domain AL541_RS21900 PF01551 Peptidase family M23 AL541_RS21900 PF08525 Opacity-associated protein A N-terminal motif AL541_RS21925 PF02954 Bacterial regulatory protein, Fis family AL541_RS21925 PF00158 Sigma-54 interaction domain AL541_RS21930 PF00004 ATPase family associated with various cellular activities (AAA) AL541_RS21930 PF17871 AAA lid domain AL541_RS21930 PF10431 C-terminal, D2-small domain, of ClpB protein AL541_RS21930 PF07724 AAA domain (Cdc48 subfamily) AL541_RS21935 PF05638 Type VI secretion system effector, Hcp AL541_RS21940 PF04717 Type VI secretion system, phage-baseplate injector AL541_RS21965 PF00069 Protein kinase domain AL541_RS21980 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AL541_RS21990 PF05947 Type VI secretion system, TssF AL541_RS22000 PF01037 Lrp/AsnC ligand binding domain AL541_RS22030 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AL541_RS22045 PF04717 Type VI secretion system, phage-baseplate injector AL541_RS22045 PF01471 Putative peptidoglycan binding domain AL541_RS22065 PF07690 Major Facilitator Superfamily AL541_RS22075 PF03466 LysR substrate binding domain AL541_RS22075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS22080 PF00106 short chain dehydrogenase AL541_RS22085 PF00582 Universal stress protein family AL541_RS22095 PF13244 Domain of unknown function (DUF4040) AL541_RS22095 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AL541_RS22095 PF00361 Proton-conducting membrane transporter AL541_RS22095 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AL541_RS22100 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AL541_RS22105 PF00361 Proton-conducting membrane transporter AL541_RS22110 PF01899 Na+/H+ ion antiporter subunit AL541_RS22115 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AL541_RS22120 PF03334 Na+/H+ antiporter subunit AL541_RS22125 PF07702 UTRA domain AL541_RS22125 PF00392 Bacterial regulatory proteins, gntR family AL541_RS22130 PF02056 Family 4 glycosyl hydrolase AL541_RS22130 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL541_RS22135 PF00367 phosphotransferase system, EIIB AL541_RS22135 PF02378 Phosphotransferase system, EIIC AL541_RS22140 PF13193 AMP-binding enzyme C-terminal domain AL541_RS22140 PF00501 AMP-binding enzyme AL541_RS22145 PF01012 Electron transfer flavoprotein domain AL541_RS22145 PF00766 Electron transfer flavoprotein FAD-binding domain AL541_RS22150 PF01012 Electron transfer flavoprotein domain AL541_RS22165 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL541_RS22165 PF00005 ABC transporter AL541_RS22170 PF00501 AMP-binding enzyme AL541_RS22190 PF00005 ABC transporter AL541_RS22195 PF00501 AMP-binding enzyme AL541_RS22195 PF14535 AMP-binding enzyme C-terminal domain AL541_RS22200 PF05724 Thiopurine S-methyltransferase (TPMT) AL541_RS22230 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_RS22235 PF00106 short chain dehydrogenase AL541_RS22240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL541_RS22240 PF00205 Thiamine pyrophosphate enzyme, central domain AL541_RS22240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL541_RS22245 PF03306 Alpha-acetolactate decarboxylase AL541_RS22250 PF03466 LysR substrate binding domain AL541_RS22250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS22255 PF13419 Haloacid dehalogenase-like hydrolase AL541_RS22270 PF02322 Cytochrome bd terminal oxidase subunit II AL541_RS22275 PF01654 Cytochrome bd terminal oxidase subunit I AL541_RS22280 PF00155 Aminotransferase class I and II AL541_RS22280 PF00392 Bacterial regulatory proteins, gntR family AL541_RS22285 PF12464 Maltose acetyltransferase AL541_RS22285 PF14602 Hexapeptide repeat of succinyl-transferase AL541_RS22295 PF00924 Mechanosensitive ion channel AL541_RS22295 PF12795 Mechanosensitive ion channel porin domain AL541_RS22295 PF12794 Mechanosensitive ion channel inner membrane domain 1 AL541_RS22305 PF00682 HMGL-like AL541_RS22310 PF02785 Biotin carboxylase C-terminal domain AL541_RS22310 PF18140 Propionyl-coenzyme A carboxylase BT domain AL541_RS22310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL541_RS22310 PF00289 Biotin carboxylase, N-terminal domain AL541_RS22310 PF00364 Biotin-requiring enzyme AL541_RS22315 PF00378 Enoyl-CoA hydratase/isomerase AL541_RS22320 PF01039 Carboxyl transferase domain AL541_RS22325 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL541_RS22325 PF02770 Acyl-CoA dehydrogenase, middle domain AL541_RS22325 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL541_RS22330 PF00376 MerR family regulatory protein AL541_RS22330 PF09278 MerR, DNA binding AL541_RS22335 PF02803 Thiolase, C-terminal domain AL541_RS22335 PF00108 Thiolase, N-terminal domain AL541_RS22340 PF00171 Aldehyde dehydrogenase family AL541_RS22345 PF02770 Acyl-CoA dehydrogenase, middle domain AL541_RS22345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL541_RS22345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL541_RS22350 PF00378 Enoyl-CoA hydratase/isomerase AL541_RS22360 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL541_RS22360 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL541_RS22370 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS22370 PF00072 Response regulator receiver domain AL541_RS22375 PF00440 Bacterial regulatory proteins, tetR family AL541_RS22375 PF13977 BetI-type transcriptional repressor, C-terminal AL541_RS22380 PF00171 Aldehyde dehydrogenase family AL541_RS22385 PF00732 GMC oxidoreductase AL541_RS22385 PF05199 GMC oxidoreductase AL541_RS22390 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL541_RS22395 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS22400 PF00571 CBS domain AL541_RS22400 PF00005 ABC transporter AL541_RS22405 PF00881 Nitroreductase family AL541_RS22415 PF01145 SPFH domain / Band 7 family AL541_RS22415 PF16200 C-terminal region of band_7 AL541_RS22425 PF03150 Di-haem cytochrome c peroxidase AL541_RS22425 PF00034 Cytochrome c AL541_RS22430 PF00072 Response regulator receiver domain AL541_RS22430 PF09308 LuxQ, periplasmic AL541_RS22430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS22430 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS22440 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AL541_RS22440 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL541_RS22450 PF04116 Fatty acid hydroxylase superfamily AL541_RS22495 PF00563 EAL domain AL541_RS22495 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS22500 PF05025 RbsD / FucU transport protein family AL541_RS22505 PF00005 ABC transporter AL541_RS22510 PF02653 Branched-chain amino acid transport system / permease component AL541_RS22515 PF13407 Periplasmic binding protein domain AL541_RS22520 PF00294 pfkB family carbohydrate kinase AL541_RS22525 PF00356 Bacterial regulatory proteins, lacI family AL541_RS22535 PF04973 Nicotinamide mononucleotide transporter AL541_RS22540 PF01048 Phosphorylase superfamily AL541_RS22550 PF01497 Periplasmic binding protein AL541_RS22555 PF01032 FecCD transport family AL541_RS22560 PF01032 FecCD transport family AL541_RS22565 PF00005 ABC transporter AL541_RS22570 PF13411 MerR HTH family regulatory protein AL541_RS22580 PF00593 TonB dependent receptor AL541_RS22580 PF07715 TonB-dependent Receptor Plug Domain AL541_RS22615 PF12805 FUSC-like inner membrane protein yccS AL541_RS22620 PF13361 UvrD-like helicase C-terminal domain AL541_RS22620 PF12462 DNA helicase IV / RNA helicase N terminal AL541_RS22620 PF00580 UvrD/REP helicase N-terminal domain AL541_RS22625 PF02142 MGS-like domain AL541_RS22630 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL541_RS22635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS22635 PF00672 HAMP domain AL541_RS22635 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS22635 PF01627 Hpt domain AL541_RS22635 PF00072 Response regulator receiver domain AL541_RS22650 PF00072 Response regulator receiver domain AL541_RS22650 PF00486 Transcriptional regulatory protein, C terminal AL541_RS22655 PF00884 Sulfatase AL541_RS22660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS22660 PF03466 LysR substrate binding domain AL541_RS22665 PF00884 Sulfatase AL541_RS22665 PF16385 Domain of unknown function AL541_RS22670 PF04055 Radical SAM superfamily AL541_RS22670 PF13186 Iron-sulfur cluster-binding domain AL541_RS22675 PF17863 AAA lid domain AL541_RS22675 PF07726 ATPase family associated with various cellular activities (AAA) AL541_RS22690 PF00092 von Willebrand factor type A domain AL541_RS22705 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL541_RS22710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS22710 PF03466 LysR substrate binding domain AL541_RS22715 PF00781 Diacylglycerol kinase catalytic domain AL541_RS22720 PF04076 Bacterial OB fold (BOF) protein AL541_RS22730 PF18081 Fanconi anemia-associated nuclease SAP domain AL541_RS22730 PF08774 VRR-NUC domain AL541_RS22745 PF03606 C4-dicarboxylate anaerobic carrier AL541_RS22755 PF00814 Glycoprotease family AL541_RS22755 PF00583 Acetyltransferase (GNAT) family AL541_RS22765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS22765 PF00072 Response regulator receiver domain AL541_RS22770 PF00155 Aminotransferase class I and II AL541_RS22775 PF01926 50S ribosome-binding GTPase AL541_RS22780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS22780 PF00072 Response regulator receiver domain AL541_RS22780 PF00512 His Kinase A (phospho-acceptor) domain AL541_RS22780 PF09456 RcsC Alpha-Beta-Loop (ABL) AL541_RS22785 PF13188 PAS domain AL541_RS22785 PF00563 EAL domain AL541_RS22785 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS22785 PF03707 Bacterial signalling protein N terminal repeat AL541_RS22790 PF00072 Response regulator receiver domain AL541_RS22790 PF00196 Bacterial regulatory proteins, luxR family AL541_RS22795 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS22805 PF00072 Response regulator receiver domain AL541_RS22805 PF00196 Bacterial regulatory proteins, luxR family AL541_RS22815 PF00072 Response regulator receiver domain AL541_RS22815 PF01584 CheW-like domain AL541_RS22820 PF07963 Prokaryotic N-terminal methylation motif AL541_RS22820 PF08334 Type II secretion system (T2SS), protein G AL541_RS22830 PF00892 EamA-like transporter family AL541_RS22850 PF00893 Small Multidrug Resistance protein AL541_RS22855 PF00892 EamA-like transporter family AL541_RS22870 PF00171 Aldehyde dehydrogenase family AL541_RS22880 PF01645 Conserved region in glutamate synthase AL541_RS22880 PF13187 4Fe-4S dicluster domain AL541_RS22885 PF00141 Peroxidase AL541_RS22890 PF09722 Protein of unknown function (DUF2384) AL541_RS22900 PF01757 Acyltransferase family AL541_RS22910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL541_RS22915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_RS22935 PF03448 MgtE intracellular N domain AL541_RS22935 PF01769 Divalent cation transporter AL541_RS22935 PF00571 CBS domain AL541_RS22970 PF01327 Polypeptide deformylase AL541_RS22975 PF00376 MerR family regulatory protein AL541_RS22975 PF09278 MerR, DNA binding AL541_RS22985 PF02253 Phospholipase A1 AL541_RS23005 PF00664 ABC transporter transmembrane region AL541_RS23005 PF00005 ABC transporter AL541_RS23015 PF11490 DNA polymerase III polC-type N-terminus II AL541_RS23015 PF00929 Exonuclease AL541_RS23015 PF02811 PHP domain AL541_RS23015 PF14579 Helix-hairpin-helix motif AL541_RS23015 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL541_RS23015 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL541_RS23065 PF12833 Helix-turn-helix domain AL541_RS23070 PF02627 Carboxymuconolactone decarboxylase family AL541_RS23075 PF00892 EamA-like transporter family AL541_RS23080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS23080 PF03466 LysR substrate binding domain AL541_RS23085 PF00753 Metallo-beta-lactamase superfamily AL541_RS23085 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL541_RS23095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL541_RS23100 PF02347 Glycine cleavage system P-protein AL541_RS23105 PF01597 Glycine cleavage H-protein AL541_RS23110 PF00464 Serine hydroxymethyltransferase AL541_RS23120 PF01571 Aminomethyltransferase folate-binding domain AL541_RS23120 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL541_RS23140 PF00873 AcrB/AcrD/AcrF family AL541_RS23150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL541_RS23150 PF02378 Phosphotransferase system, EIIC AL541_RS23155 PF00294 pfkB family carbohydrate kinase AL541_RS23160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL541_RS23160 PF00381 PTS HPr component phosphorylation site AL541_RS23165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL541_RS23165 PF00356 Bacterial regulatory proteins, lacI family AL541_RS23180 PF01590 GAF domain AL541_RS23180 PF00563 EAL domain AL541_RS23180 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS23180 PF00989 PAS fold AL541_RS23185 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS23190 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_RS23195 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS23200 PF00005 ABC transporter AL541_RS23210 PF00465 Iron-containing alcohol dehydrogenase AL541_RS23215 PF12833 Helix-turn-helix domain AL541_RS23215 PF06719 AraC-type transcriptional regulator N-terminus AL541_RS23225 PF00704 Glycosyl hydrolases family 18 AL541_RS23225 PF06483 Chitinase C AL541_RS23230 PF00483 Nucleotidyl transferase AL541_RS23235 PF01268 Formate--tetrahydrofolate ligase AL541_RS23240 PF00294 pfkB family carbohydrate kinase AL541_RS23255 PF13419 Haloacid dehalogenase-like hydrolase AL541_RS23265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS23265 PF00672 HAMP domain AL541_RS23275 PF04336 Acyl carrier protein phosphodiesterase AL541_RS23280 PF00270 DEAD/DEAH box helicase AL541_RS23280 PF00271 Helicase conserved C-terminal domain AL541_RS23300 PF01292 Prokaryotic cytochrome b561 AL541_RS23305 PF04264 YceI-like domain AL541_RS23310 PF01226 Formate/nitrite transporter AL541_RS23315 PF03466 LysR substrate binding domain AL541_RS23315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS23320 PF06496 Protein of unknown function (DUF1097) AL541_RS23325 PF11398 Protein of unknown function (DUF2813) AL541_RS23330 PF02872 5'-nucleotidase, C-terminal domain AL541_RS23330 PF00149 Calcineurin-like phosphoesterase AL541_RS23335 PF03741 Integral membrane protein TerC family AL541_RS23355 PF12262 Bacterial virulence factor lipase N-terminal AL541_RS23360 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL541_RS23375 PF03061 Thioesterase superfamily AL541_RS23385 PF12793 Sugar transport-related sRNA regulator N-term AL541_RS23385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL541_RS23410 PF00684 DnaJ central domain AL541_RS23410 PF00226 DnaJ domain AL541_RS23410 PF01556 DnaJ C terminal domain AL541_RS23420 PF13188 PAS domain AL541_RS23420 PF03707 Bacterial signalling protein N terminal repeat AL541_RS23420 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS23420 PF00563 EAL domain AL541_RS23425 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL541_RS23425 PF07055 Enoyl reductase FAD binding domain AL541_RS23425 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL541_RS23430 PF13472 GDSL-like Lipase/Acylhydrolase family AL541_RS23435 PF00005 ABC transporter AL541_RS23450 PF02626 Carboxyltransferase domain, subdomain A and B AL541_RS23455 PF02682 Carboxyltransferase domain, subdomain C and D AL541_RS23460 PF03746 LamB/YcsF family AL541_RS23465 PF08448 PAS fold AL541_RS23465 PF08447 PAS fold AL541_RS23465 PF00563 EAL domain AL541_RS23465 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS23465 PF05231 MASE1 AL541_RS23465 PF13426 PAS domain AL541_RS23470 PF16363 GDP-mannose 4,6 dehydratase AL541_RS23480 PF00593 TonB dependent receptor AL541_RS23480 PF04886 PT repeat AL541_RS23480 PF07715 TonB-dependent Receptor Plug Domain AL541_RS23485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS23485 PF03466 LysR substrate binding domain AL541_RS23490 PF13607 Succinyl-CoA ligase like flavodoxin domain AL541_RS23490 PF13380 CoA binding domain AL541_RS23490 PF00583 Acetyltransferase (GNAT) family AL541_RS23495 PF05036 Sporulation related domain AL541_RS23500 PF01820 D-ala D-ala ligase N-terminus AL541_RS23500 PF07478 D-ala D-ala ligase C-terminus AL541_RS23510 PF01253 Translation initiation factor SUI1 AL541_RS23615 PF05840 Bacteriophage replication gene A protein (GPA) AL541_RS23670 PF03701 Uncharacterised protein family (UPF0181) AL541_RS23685 PF00486 Transcriptional regulatory protein, C terminal AL541_RS23685 PF00072 Response regulator receiver domain AL541_RS23695 PF02233 NAD(P) transhydrogenase beta subunit AL541_RS23700 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL541_RS23700 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL541_RS23700 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL541_RS23715 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS23720 PF00360 Phytochrome region AL541_RS23720 PF01590 GAF domain AL541_RS23720 PF00563 EAL domain AL541_RS23720 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS23730 PF03459 TOBE domain AL541_RS23730 PF00005 ABC transporter AL541_RS23735 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS23745 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL541_RS23745 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL541_RS23750 PF04076 Bacterial OB fold (BOF) protein AL541_RS23760 PF18030 RimK PreATP-grasp domain AL541_RS23760 PF08443 RimK-like ATP-grasp domain AL541_RS23765 PF00155 Aminotransferase class I and II AL541_RS23770 PF12833 Helix-turn-helix domain AL541_RS23770 PF12852 Cupin AL541_RS23775 PF01554 MatE AL541_RS23785 PF03477 ATP cone domain AL541_RS23785 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL541_RS23805 PF04143 Sulphur transport AL541_RS23815 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS23815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL541_RS23820 PF01177 Asp/Glu/Hydantoin racemase AL541_RS23825 PF02567 Phenazine biosynthesis-like protein AL541_RS23840 PF00384 Molybdopterin oxidoreductase AL541_RS23850 PF03466 LysR substrate binding domain AL541_RS23850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS23855 PF02634 FdhD/NarQ family AL541_RS23860 PF07690 Major Facilitator Superfamily AL541_RS23865 PF00072 Response regulator receiver domain AL541_RS23865 PF00196 Bacterial regulatory proteins, luxR family AL541_RS23870 PF07730 Histidine kinase AL541_RS23870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS23870 PF05231 MASE1 AL541_RS23875 PF07690 Major Facilitator Superfamily AL541_RS23880 PF01238 Phosphomannose isomerase type I AL541_RS23900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL541_RS23900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL541_RS23905 PF00085 Thioredoxin AL541_RS23910 PF07690 Major Facilitator Superfamily AL541_RS23915 PF11756 Nitrous oxide-stimulated promoter AL541_RS23920 PF13302 Acetyltransferase (GNAT) domain AL541_RS23930 PF00593 TonB dependent receptor AL541_RS23930 PF07715 TonB-dependent Receptor Plug Domain AL541_RS23945 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL541_RS23960 PF10414 Sirohaem synthase dimerisation region AL541_RS23960 PF14824 Sirohaem biosynthesis protein central AL541_RS23960 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL541_RS23965 PF01226 Formate/nitrite transporter AL541_RS23970 PF13806 Rieske-like [2Fe-2S] domain AL541_RS23975 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL541_RS23975 PF04324 BFD-like [2Fe-2S] binding domain AL541_RS23975 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL541_RS23975 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL541_RS23975 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS23980 PF14760 Rnk N-terminus AL541_RS23980 PF01272 Transcription elongation factor, GreA/GreB, C-term AL541_RS23990 PF03707 Bacterial signalling protein N terminal repeat AL541_RS23990 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS23990 PF00563 EAL domain AL541_RS24000 PF03707 Bacterial signalling protein N terminal repeat AL541_RS24000 PF00563 EAL domain AL541_RS24000 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS24005 PF00296 Luciferase-like monooxygenase AL541_RS24040 PF00128 Alpha amylase, catalytic domain AL541_RS24040 PF09154 Domain of unknown function (DUF1939) AL541_RS24055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS24055 PF00672 HAMP domain AL541_RS24060 PF00842 Alanine racemase, C-terminal domain AL541_RS24060 PF01168 Alanine racemase, N-terminal domain AL541_RS24075 PF01565 FAD binding domain AL541_RS24075 PF09330 D-lactate dehydrogenase, membrane binding AL541_RS24080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS24080 PF03466 LysR substrate binding domain AL541_RS24095 PF05762 VWA domain containing CoxE-like protein AL541_RS24100 PF07728 AAA domain (dynein-related subfamily) AL541_RS24100 PF12592 Protein of unknown function (DUF3763) AL541_RS24100 PF17868 AAA lid domain AL541_RS24110 PF01212 Beta-eliminating lyase AL541_RS24120 PF03606 C4-dicarboxylate anaerobic carrier AL541_RS24130 PF08212 Lipocalin-like domain AL541_RS24140 PF13476 AAA domain AL541_RS24145 PF12320 Type 5 capsule protein repressor C-terminal domain AL541_RS24145 PF00149 Calcineurin-like phosphoesterase AL541_RS24160 PF04717 Type VI secretion system, phage-baseplate injector AL541_RS24160 PF06715 Gp5 C-terminal repeat (3 copies) AL541_RS24170 PF10431 C-terminal, D2-small domain, of ClpB protein AL541_RS24170 PF00004 ATPase family associated with various cellular activities (AAA) AL541_RS24170 PF07724 AAA domain (Cdc48 subfamily) AL541_RS24170 PF17871 AAA lid domain AL541_RS24180 PF05947 Type VI secretion system, TssF AL541_RS24195 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AL541_RS24200 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AL541_RS24205 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AL541_RS24225 PF06744 Type VI secretion protein IcmF C-terminal AL541_RS24225 PF14331 ImcF-related N-terminal domain AL541_RS24225 PF06761 Intracellular multiplication and human macrophage-killing AL541_RS24230 PF00691 OmpA family AL541_RS24230 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL541_RS24235 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AL541_RS24250 PF00069 Protein kinase domain AL541_RS24250 PF03793 PASTA domain AL541_RS24270 PF00072 Response regulator receiver domain AL541_RS24270 PF00211 Adenylate and Guanylate cyclase catalytic domain AL541_RS24300 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL541_RS24300 PF13806 Rieske-like [2Fe-2S] domain AL541_RS24300 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS24300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL541_RS24300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL541_RS24300 PF04324 BFD-like [2Fe-2S] binding domain AL541_RS24305 PF00005 ABC transporter AL541_RS24310 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS24315 PF00005 ABC transporter AL541_RS24325 PF00072 Response regulator receiver domain AL541_RS24325 PF03861 ANTAR domain AL541_RS24330 PF01738 Dienelactone hydrolase family AL541_RS24335 PF02885 Glycosyl transferase family, helical bundle domain AL541_RS24335 PF00591 Glycosyl transferase family, a/b domain AL541_RS24340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL541_RS24340 PF14824 Sirohaem biosynthesis protein central AL541_RS24340 PF10414 Sirohaem synthase dimerisation region AL541_RS24345 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL541_RS24345 PF01568 Molydopterin dinucleotide binding domain AL541_RS24345 PF00384 Molybdopterin oxidoreductase AL541_RS24355 PF03222 Tryptophan/tyrosine permease family AL541_RS24365 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS24375 PF01483 Proprotein convertase P-domain AL541_RS24375 PF00082 Subtilase family AL541_RS24395 PF00486 Transcriptional regulatory protein, C terminal AL541_RS24395 PF00072 Response regulator receiver domain AL541_RS24430 PF04314 Copper chaperone PCu(A)C AL541_RS24440 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL541_RS24440 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL541_RS24450 PF01081 KDPG and KHG aldolase AL541_RS24455 PF00294 pfkB family carbohydrate kinase AL541_RS24460 PF07883 Cupin domain AL541_RS24465 PF07940 Heparinase II/III-like protein AL541_RS24465 PF05426 Alginate lyase AL541_RS24470 PF05426 Alginate lyase AL541_RS24470 PF07940 Heparinase II/III-like protein AL541_RS24475 PF08787 Alginate lyase AL541_RS24480 PF08787 Alginate lyase AL541_RS24495 PF08787 Alginate lyase AL541_RS24505 PF07729 FCD domain AL541_RS24505 PF00392 Bacterial regulatory proteins, gntR family AL541_RS24510 PF07729 FCD domain AL541_RS24510 PF00392 Bacterial regulatory proteins, gntR family AL541_RS24515 PF00571 CBS domain AL541_RS24520 PF14579 Helix-hairpin-helix motif AL541_RS24520 PF02811 PHP domain AL541_RS24520 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL541_RS24520 PF00929 Exonuclease AL541_RS24520 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL541_RS24520 PF11490 DNA polymerase III polC-type N-terminus II AL541_RS24525 PF00474 Sodium:solute symporter family AL541_RS24540 PF00676 Dehydrogenase E1 component AL541_RS24545 PF02780 Transketolase, C-terminal domain AL541_RS24545 PF02779 Transketolase, pyrimidine binding domain AL541_RS24550 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL541_RS24550 PF00364 Biotin-requiring enzyme AL541_RS24550 PF02817 e3 binding domain AL541_RS24555 PF01012 Electron transfer flavoprotein domain AL541_RS24555 PF00766 Electron transfer flavoprotein FAD-binding domain AL541_RS24565 PF03466 LysR substrate binding domain AL541_RS24565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS24575 PF00043 Glutathione S-transferase, C-terminal domain AL541_RS24575 PF13417 Glutathione S-transferase, N-terminal domain AL541_RS24580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS24580 PF03466 LysR substrate binding domain AL541_RS24590 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS24595 PF00528 Binding-protein-dependent transport system inner membrane component AL541_RS24600 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL541_RS24605 PF00005 ABC transporter AL541_RS24635 PF02028 BCCT, betaine/carnitine/choline family transporter AL541_RS24645 PF00171 Aldehyde dehydrogenase family AL541_RS24660 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL541_RS24660 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL541_RS24665 PF01040 UbiA prenyltransferase family AL541_RS24675 PF00510 Cytochrome c oxidase subunit III AL541_RS24680 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL541_RS24685 PF06481 COX Aromatic Rich Motif AL541_RS24685 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL541_RS24695 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL541_RS24695 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL541_RS24700 PF00378 Enoyl-CoA hydratase/isomerase AL541_RS24705 PF00378 Enoyl-CoA hydratase/isomerase AL541_RS24710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL541_RS24710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL541_RS24710 PF02770 Acyl-CoA dehydrogenase, middle domain AL541_RS24715 PF00171 Aldehyde dehydrogenase family AL541_RS24720 PF02803 Thiolase, C-terminal domain AL541_RS24720 PF00108 Thiolase, N-terminal domain AL541_RS24725 PF00376 MerR family regulatory protein AL541_RS24725 PF09278 MerR, DNA binding AL541_RS24730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL541_RS24730 PF02770 Acyl-CoA dehydrogenase, middle domain AL541_RS24730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL541_RS24735 PF01039 Carboxyl transferase domain AL541_RS24740 PF00378 Enoyl-CoA hydratase/isomerase AL541_RS24745 PF00682 HMGL-like AL541_RS24755 PF13426 PAS domain AL541_RS24755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS24755 PF08447 PAS fold AL541_RS24765 PF01914 MarC family integral membrane protein AL541_RS24775 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL541_RS24780 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL541_RS24780 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL541_RS24785 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL541_RS24785 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL541_RS24795 PF08525 Opacity-associated protein A N-terminal motif AL541_RS24795 PF01476 LysM domain AL541_RS24795 PF01551 Peptidase family M23 AL541_RS24800 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL541_RS24805 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL541_RS24805 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL541_RS24810 PF00132 Bacterial transferase hexapeptide (six repeats) AL541_RS24815 PF01979 Amidohydrolase family AL541_RS24820 PF01475 Ferric uptake regulator family AL541_RS24835 PF01925 Sulfite exporter TauE/SafE AL541_RS24850 PF12146 Serine aminopeptidase, S33 AL541_RS24855 PF12146 Serine aminopeptidase, S33 AL541_RS24860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS24860 PF03466 LysR substrate binding domain AL541_RS24865 PF00871 Acetokinase family AL541_RS24880 PF03880 DbpA RNA binding domain AL541_RS24880 PF00271 Helicase conserved C-terminal domain AL541_RS24880 PF00270 DEAD/DEAH box helicase AL541_RS24885 PF00575 S1 RNA binding domain AL541_RS24885 PF08206 Ribonuclease B OB domain AL541_RS24885 PF00773 RNB domain AL541_RS24890 PF12833 Helix-turn-helix domain AL541_RS24900 PF12849 PBP superfamily domain AL541_RS24905 PF01575 MaoC like domain AL541_RS24915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS24915 PF00672 HAMP domain AL541_RS24915 PF12729 Four helix bundle sensory module for signal transduction AL541_RS24920 PF00005 ABC transporter AL541_RS24925 PF12792 CSS motif domain associated with EAL AL541_RS24925 PF00563 EAL domain AL541_RS24945 PF00271 Helicase conserved C-terminal domain AL541_RS24945 PF00270 DEAD/DEAH box helicase AL541_RS24950 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL541_RS24950 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL541_RS24960 PF01470 Pyroglutamyl peptidase AL541_RS24970 PF00313 'Cold-shock' DNA-binding domain AL541_RS24980 PF00291 Pyridoxal-phosphate dependent enzyme AL541_RS24990 PF09905 DNA-binding protein VF530 AL541_RS24995 PF00271 Helicase conserved C-terminal domain AL541_RS24995 PF00270 DEAD/DEAH box helicase AL541_RS25000 PF07690 Major Facilitator Superfamily AL541_RS25005 PF03466 LysR substrate binding domain AL541_RS25005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS25015 PF12843 Putative quorum-sensing-regulated virulence factor AL541_RS25035 PF01329 Pterin 4 alpha carbinolamine dehydratase AL541_RS25040 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL541_RS25045 PF00501 AMP-binding enzyme AL541_RS25045 PF13193 AMP-binding enzyme C-terminal domain AL541_RS25055 PF03466 LysR substrate binding domain AL541_RS25055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS25065 PF00892 EamA-like transporter family AL541_RS25075 PF00465 Iron-containing alcohol dehydrogenase AL541_RS25080 PF07995 Glucose / Sorbosone dehydrogenase AL541_RS25085 PF17676 LD-carboxypeptidase C-terminal domain AL541_RS25085 PF02016 LD-carboxypeptidase N-terminal domain AL541_RS25095 PF00210 Ferritin-like domain AL541_RS25100 PF17200 Single Cache domain 2 AL541_RS25100 PF00672 HAMP domain AL541_RS25100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS25120 PF13533 Biotin-lipoyl like AL541_RS25125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL541_RS25125 PF00072 Response regulator receiver domain AL541_RS25130 PF02321 Outer membrane efflux protein AL541_RS25135 PF00005 ABC transporter AL541_RS25135 PF00664 ABC transporter transmembrane region AL541_RS25140 PF00005 ABC transporter AL541_RS25140 PF00664 ABC transporter transmembrane region AL541_RS25150 PF00140 Sigma-70 factor, region 1.2 AL541_RS25150 PF04542 Sigma-70 region 2 AL541_RS25150 PF04539 Sigma-70 region 3 AL541_RS25150 PF04545 Sigma-70, region 4 AL541_RS25155 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS25160 PF03889 Alternative ribosome-rescue factor A AL541_RS25165 PF00313 'Cold-shock' DNA-binding domain AL541_RS25185 PF00691 OmpA family AL541_RS25185 PF05736 OprF membrane domain AL541_RS25195 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL541_RS25195 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL541_RS25200 PF01040 UbiA prenyltransferase family AL541_RS25205 PF02628 Cytochrome oxidase assembly protein AL541_RS25225 PF00510 Cytochrome c oxidase subunit III AL541_RS25230 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AL541_RS25235 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL541_RS25240 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL541_RS25240 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL541_RS25245 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL541_RS25245 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL541_RS25245 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL541_RS25245 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL541_RS25255 PF01810 LysE type translocator AL541_RS25275 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL541_RS25285 PF00267 Gram-negative porin AL541_RS25290 PF00892 EamA-like transporter family AL541_RS25295 PF00462 Glutaredoxin AL541_RS25310 PF07690 Major Facilitator Superfamily AL541_RS25315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS25315 PF03466 LysR substrate binding domain AL541_RS25320 PF08448 PAS fold AL541_RS25320 PF08447 PAS fold AL541_RS25320 PF00990 Diguanylate cyclase, GGDEF domain AL541_RS25320 PF00563 EAL domain AL541_RS25325 PF01551 Peptidase family M23 AL541_RS25325 PF08525 Opacity-associated protein A N-terminal motif AL541_RS25325 PF01476 LysM domain AL541_RS25350 PF07670 Nucleoside recognition AL541_RS25355 PF00672 HAMP domain AL541_RS25355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL541_RS25355 PF02743 Cache domain AL541_RS25365 PF03222 Tryptophan/tyrosine permease family AL541_RS25390 PF00248 Aldo/keto reductase family AL541_RS25395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL541_RS25395 PF03466 LysR substrate binding domain AL541_RS25415 PF01638 HxlR-like helix-turn-helix AL541_RS25430 PF01758 Sodium Bile acid symporter family AL541_RS25440 PF01161 Phosphatidylethanolamine-binding protein AL541_RS25445 PF02567 Phenazine biosynthesis-like protein AL541_RS25455 PF00005 ABC transporter AL541_RS25470 PF12838 4Fe-4S dicluster domain AL541_RS25470 PF00384 Molybdopterin oxidoreductase AL541_RS25470 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL541_RS25470 PF01568 Molydopterin dinucleotide binding domain AL541_RS25470 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL541_RS25485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL541_RS25490 PF00873 AcrB/AcrD/AcrF family AL541_RS25505 PF17151 Periplasmic sensor domain AL541_RS25505 PF00990 Diguanylate cyclase, GGDEF domain