AL541_RS00050 SM00382 ATPases associated with a variety of cellular activities AL541_RS00050 SM01086 C-terminal, D2-small domain, of ClpB protein AL541_RS00065 SM00354 helix_turn _helix lactose operon repressor AL541_RS00070 SM00487 DEAD-like helicases superfamily AL541_RS00070 SM00490 helicase superfamily c-terminal domain AL541_RS00085 SM01403 AL541_RS00085 AL541_RS00105 SM01382 AL541_RS00105 AL541_RS00105 SM01383 AL541_RS00105 AL541_RS00120 SM00322 K homology RNA-binding domain AL541_RS00140 SM01374 AL541_RS00140 AL541_RS00145 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL541_RS00210 SM00363 S4 RNA-binding domain AL541_RS00210 SM01390 AL541_RS00210 AL541_RS00215 SM00662 RNA polymerases D AL541_RS00245 SM00487 DEAD-like helicases superfamily AL541_RS00245 SM00490 helicase superfamily c-terminal domain AL541_RS00300 SM00382 ATPases associated with a variety of cellular activities AL541_RS00385 SM00382 ATPases associated with a variety of cellular activities AL541_RS00485 SM00650 Ribosomal RNA adenine dimethylases AL541_RS00505 SM00271 DnaJ molecular chaperone homology domain AL541_RS00525 SM01329 AL541_RS00525 AL541_RS00530 SM00917 LeuA allosteric (dimerisation) domain AL541_RS00545 SM00014 Acid phosphatase homologues AL541_RS00575 SM00267 diguanylate cyclase AL541_RS00580 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS00590 SM00420 helix_turn_helix, Deoxyribose operon repressor AL541_RS00590 SM01134 AL541_RS00590 AL541_RS00610 SM01120 AL541_RS00610 AL541_RS00640 SM00563 Phosphate acyltransferases AL541_RS00750 SM00530 Helix-turn-helix XRE-family like proteins AL541_RS00765 SM00400 zinc finger AL541_RS00765 SM00493 AL541_RS00765 AL541_RS00765 SM00766 DNA primase DnaG DnaB-binding AL541_RS00790 SM01207 AL541_RS00790 AL541_RS00795 SM00905 Dihydroneopterin aldolase AL541_RS00815 SM00382 ATPases associated with a variety of cellular activities AL541_RS00830 SM00287 Bacterial SH3 domain homologues AL541_RS00845 SM00880 AL541_RS00845 AL541_RS00845 SM01118 AL541_RS00845 AL541_RS00855 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS00895 SM00387 Histidine kinase-like ATPases AL541_RS00895 SM00433 TopoisomeraseII AL541_RS00900 SM00434 DNA Topoisomerase IV AL541_RS00905 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL541_RS00910 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL541_RS00970 SM00749 bacterial OsmY and nodulation domain AL541_RS01060 SM00842 Cell division protein FtsA AL541_RS01065 SM00864 Tubulin/FtsZ family, GTPase domain AL541_RS01065 SM00865 Tubulin/FtsZ family, C-terminal domain AL541_RS01080 SM00957 SecA DEAD-like domain AL541_RS01080 SM00958 SecA preprotein cross-linking domain AL541_RS01095 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AL541_RS01100 SM00851 MGS-like domain AL541_RS01100 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL541_RS01170 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_RS01175 SM00091 PAS domain AL541_RS01175 SM00267 diguanylate cyclase AL541_RS01180 SM00073 Histidine Phosphotransfer domain AL541_RS01180 SM00091 PAS domain AL541_RS01180 SM00387 Histidine kinase-like ATPases AL541_RS01180 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS01180 SM00448 cheY-homologous receiver domain AL541_RS01190 SM00448 cheY-homologous receiver domain AL541_RS01190 SM00862 Transcriptional regulatory protein, C terminal AL541_RS01245 SM00518 AP endonuclease family 2 AL541_RS01255 SM00986 Uracil DNA glycosylase superfamily AL541_RS01255 SM00987 UreE urease accessory protein, C-terminal domain AL541_RS01280 SM00487 DEAD-like helicases superfamily AL541_RS01280 SM00490 helicase superfamily c-terminal domain AL541_RS01325 SM00382 ATPases associated with a variety of cellular activities AL541_RS01345 SM00927 DNA mismatch repair enzyme MutH AL541_RS01355 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL541_RS01375 SM01154 AL541_RS01375 AL541_RS01390 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL541_RS01405 SM00904 Riboflavin kinase AL541_RS01430 SM00226 Low molecular weight phosphatase family AL541_RS01435 SM00448 cheY-homologous receiver domain AL541_RS01435 SM00850 LytTr DNA-binding domain AL541_RS01480 SM00830 Chorismate mutase type II AL541_RS01495 SM00382 ATPases associated with a variety of cellular activities AL541_RS01515 SM00830 Chorismate mutase type II AL541_RS01525 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS01535 SM00363 S4 RNA-binding domain AL541_RS01545 SM00382 ATPases associated with a variety of cellular activities AL541_RS01545 SM01086 C-terminal, D2-small domain, of ClpB protein AL541_RS01630 SM00448 cheY-homologous receiver domain AL541_RS01630 SM00862 Transcriptional regulatory protein, C terminal AL541_RS01635 SM00091 PAS domain AL541_RS01635 SM00387 Histidine kinase-like ATPases AL541_RS01635 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS01665 SM00382 ATPases associated with a variety of cellular activities AL541_RS01705 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_RS01710 SM00020 Trypsin-like serine protease AL541_RS01725 SM01323 AL541_RS01725 AL541_RS01780 SM00271 DnaJ molecular chaperone homology domain AL541_RS01805 SM00562 AL541_RS01805 AL541_RS01815 SM00530 Helix-turn-helix XRE-family like proteins AL541_RS01835 SM00564 beta-propeller repeat AL541_RS01840 SM00382 ATPases associated with a variety of cellular activities AL541_RS01860 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_RS01860 SM01240 AL541_RS01860 AL541_RS01875 SM00495 Chitin-binding domain type 3 AL541_RS02010 SM00271 DnaJ molecular chaperone homology domain AL541_RS02055 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS02060 SM01211 AL541_RS02060 AL541_RS02115 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL541_RS02165 SM00861 Transketolase, pyrimidine binding domain AL541_RS02190 SM00981 AL541_RS02190 AL541_RS02215 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL541_RS02215 SM00475 5'-3' exonuclease AL541_RS02225 SM00267 diguanylate cyclase AL541_RS02230 SM00028 Tetratricopeptide repeats AL541_RS02260 SM00382 ATPases associated with a variety of cellular activities AL541_RS02260 SM00930 AL541_RS02260 AL541_RS02270 SM00354 helix_turn _helix lactose operon repressor AL541_RS02280 SM00642 Alpha-amylase domain AL541_RS02290 SM00862 Transcriptional regulatory protein, C terminal AL541_RS02305 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_RS02320 SM00936 Penicillin-binding protein 5, C-terminal domain AL541_RS02375 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_RS02375 SM01091 Transporter associated domain AL541_RS02390 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_RS02520 SM01400 AL541_RS02520 AL541_RS02540 SM00937 AL541_RS02540 AL541_RS02575 SM00363 S4 RNA-binding domain AL541_RS02580 SM00463 Small MutS-related domain AL541_RS02605 SM01081 Putative carbohydrate binding domain AL541_RS02685 SM00858 AL541_RS02685 AL541_RS02690 SM00260 Two component signalling adaptor domain AL541_RS02690 SM00448 cheY-homologous receiver domain AL541_RS02695 SM00138 Methyltransferase, chemotaxis proteins AL541_RS02740 SM00047 Lysozyme subfamily 2 AL541_RS02810 SM00771 ZipA, C-terminal domain (FtsZ-binding) AL541_RS02815 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL541_RS02815 SM00292 breast cancer carboxy-terminal domain AL541_RS02815 SM00532 Ligase N family AL541_RS02840 SM00244 prohibitin homologues AL541_RS02875 SM00938 Nitrogen regulatory protein P-II AL541_RS02880 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_RS02910 SM00862 Transcriptional regulatory protein, C terminal AL541_RS02915 SM00387 Histidine kinase-like ATPases AL541_RS02935 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL541_RS03045 SM00861 Transketolase, pyrimidine binding domain AL541_RS03060 SM00881 CoA binding domain AL541_RS03070 SM00382 ATPases associated with a variety of cellular activities AL541_RS03080 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS03085 SM00899 AL541_RS03085 AL541_RS03110 SM00836 DALR anticodon binding domain AL541_RS03110 SM01016 Arginyl tRNA synthetase N terminal dom AL541_RS03130 SM00487 DEAD-like helicases superfamily AL541_RS03130 SM00491 AL541_RS03130 AL541_RS03160 SM00474 3'-5' exonuclease AL541_RS03210 SM00825 Beta-ketoacyl synthase AL541_RS03215 SM00822 AL541_RS03215 AL541_RS03225 SM00825 Beta-ketoacyl synthase AL541_RS03285 SM00563 Phosphate acyltransferases AL541_RS03315 SM00487 DEAD-like helicases superfamily AL541_RS03315 SM00490 helicase superfamily c-terminal domain AL541_RS03365 SM00382 ATPases associated with a variety of cellular activities AL541_RS03365 SM00448 cheY-homologous receiver domain AL541_RS03370 SM00387 Histidine kinase-like ATPases AL541_RS03370 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS03390 SM00382 ATPases associated with a variety of cellular activities AL541_RS03390 SM00994 ClpX C4-type zinc finger AL541_RS03390 SM01086 C-terminal, D2-small domain, of ClpB protein AL541_RS03395 SM00382 ATPases associated with a variety of cellular activities AL541_RS03395 SM00464 Found in ATP-dependent protease La (LON) AL541_RS03400 SM00411 bacterial (prokaryotic) histone like domain AL541_RS03410 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL541_RS03420 SM01144 AL541_RS03420 AL541_RS03425 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_RS03430 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_RS03460 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AL541_RS03480 SM00563 Phosphate acyltransferases AL541_RS03490 SM00978 AL541_RS03490 AL541_RS03550 SM00344 helix_turn_helix ASNC type AL541_RS03580 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS03580 SM00267 diguanylate cyclase AL541_RS03595 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_RS03615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS03615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS03665 SM00487 DEAD-like helicases superfamily AL541_RS03665 SM00490 helicase superfamily c-terminal domain AL541_RS03665 SM00982 AL541_RS03665 AL541_RS03665 SM01058 CarD-like/TRCF domain AL541_RS03680 SM00382 ATPases associated with a variety of cellular activities AL541_RS03695 SM00849 Metallo-beta-lactamase superfamily AL541_RS03705 SM00382 ATPases associated with a variety of cellular activities AL541_RS03735 SM00763 PrkA AAA domain AL541_RS03785 SM00382 ATPases associated with a variety of cellular activities AL541_RS03790 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS03790 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL541_RS03805 SM01276 AL541_RS03805 AL541_RS03830 SM00491 AL541_RS03830 AL541_RS03855 SM00357 Cold shock protein domain AL541_RS03865 SM00382 ATPases associated with a variety of cellular activities AL541_RS03865 SM01086 C-terminal, D2-small domain, of ClpB protein AL541_RS03870 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_RS03900 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL541_RS03900 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL541_RS03900 SM00493 AL541_RS03900 AL541_RS03935 SM00354 helix_turn _helix lactose operon repressor AL541_RS03945 SM00448 cheY-homologous receiver domain AL541_RS03945 SM00862 Transcriptional regulatory protein, C terminal AL541_RS04030 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL541_RS04035 SM00382 ATPases associated with a variety of cellular activities AL541_RS04090 SM00028 Tetratricopeptide repeats AL541_RS04125 SM00387 Histidine kinase-like ATPases AL541_RS04125 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS04125 SM00448 cheY-homologous receiver domain AL541_RS04160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS04160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS04175 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_RS04205 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS04230 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL541_RS04230 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL541_RS04235 SM00344 helix_turn_helix ASNC type AL541_RS04240 SM00843 AL541_RS04240 AL541_RS04250 SM00382 ATPases associated with a variety of cellular activities AL541_RS04280 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_RS04280 SM00876 Biotin and Thiamin Synthesis associated domain AL541_RS04375 SM00528 Domain in histone-like proteins of HNS family AL541_RS04430 SM00052 Putative diguanylate phosphodiesterase AL541_RS04445 SM00840 AL541_RS04445 AL541_RS04520 SM01131 AL541_RS04520 AL541_RS04530 SM00382 ATPases associated with a variety of cellular activities AL541_RS04535 SM00382 ATPases associated with a variety of cellular activities AL541_RS04555 SM00382 ATPases associated with a variety of cellular activities AL541_RS04610 SM00155 Phospholipase D. Active site motifs. AL541_RS04640 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL541_RS04640 SM00382 ATPases associated with a variety of cellular activities AL541_RS04660 SM00382 ATPases associated with a variety of cellular activities AL541_RS04710 SM00387 Histidine kinase-like ATPases AL541_RS04715 SM00448 cheY-homologous receiver domain AL541_RS04715 SM00862 Transcriptional regulatory protein, C terminal AL541_RS04725 SM00487 DEAD-like helicases superfamily AL541_RS04725 SM00490 helicase superfamily c-terminal domain AL541_RS04730 SM00363 S4 RNA-binding domain AL541_RS04760 SM00382 ATPases associated with a variety of cellular activities AL541_RS04860 SM00448 cheY-homologous receiver domain AL541_RS04865 SM00387 Histidine kinase-like ATPases AL541_RS04885 SM00382 ATPases associated with a variety of cellular activities AL541_RS04890 SM00382 ATPases associated with a variety of cellular activities AL541_RS04915 SM00267 diguanylate cyclase AL541_RS04930 SM00919 Malic enzyme, NAD binding domain AL541_RS04930 SM01274 AL541_RS04930 AL541_RS04935 SM00487 DEAD-like helicases superfamily AL541_RS04935 SM00490 helicase superfamily c-terminal domain AL541_RS04945 SM01321 AL541_RS04945 AL541_RS05025 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS05025 SM00866 AL541_RS05025 AL541_RS05040 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL541_RS05065 SM00530 Helix-turn-helix XRE-family like proteins AL541_RS05100 SM00873 B3/4 domain AL541_RS05100 SM00874 tRNA synthetase B5 domain AL541_RS05100 SM00896 Ferredoxin-fold anticodon binding domain AL541_RS05110 SM00411 bacterial (prokaryotic) histone like domain AL541_RS05145 SM00479 AL541_RS05145 AL541_RS05175 SM00855 Phosphoglycerate mutase family AL541_RS05195 SM00382 ATPases associated with a variety of cellular activities AL541_RS05240 SM00245 tail specific protease AL541_RS05250 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS05250 SM00895 AL541_RS05250 AL541_RS05280 SM01130 AL541_RS05280 AL541_RS05285 SM00382 ATPases associated with a variety of cellular activities AL541_RS05305 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL541_RS05315 SM00382 ATPases associated with a variety of cellular activities AL541_RS05320 SM00382 ATPases associated with a variety of cellular activities AL541_RS05540 SM01230 AL541_RS05540 AL541_RS05555 SM00530 Helix-turn-helix XRE-family like proteins AL541_RS05590 SM00052 Putative diguanylate phosphodiesterase AL541_RS05600 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_RS05630 SM00387 Histidine kinase-like ATPases AL541_RS05630 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS05630 SM00448 cheY-homologous receiver domain AL541_RS05635 SM00052 Putative diguanylate phosphodiesterase AL541_RS05635 SM00267 diguanylate cyclase AL541_RS05645 SM00028 Tetratricopeptide repeats AL541_RS05675 SM00487 DEAD-like helicases superfamily AL541_RS05705 SM00857 Resolvase, N terminal domain AL541_RS05710 SM00382 ATPases associated with a variety of cellular activities AL541_RS05760 SM00528 Domain in histone-like proteins of HNS family AL541_RS05780 SM00990 AL541_RS05780 AL541_RS05820 SM00530 Helix-turn-helix XRE-family like proteins AL541_RS05840 SM00267 diguanylate cyclase AL541_RS05860 SM00382 ATPases associated with a variety of cellular activities AL541_RS05940 SM00382 ATPases associated with a variety of cellular activities AL541_RS05945 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_RS05945 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_RS05950 SM00479 AL541_RS05950 AL541_RS05985 SM00028 Tetratricopeptide repeats AL541_RS06050 SM00420 helix_turn_helix, Deoxyribose operon repressor AL541_RS06050 SM01134 AL541_RS06050 AL541_RS06065 SM00267 diguanylate cyclase AL541_RS06090 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_RS06090 SM00387 Histidine kinase-like ATPases AL541_RS06095 SM00448 cheY-homologous receiver domain AL541_RS06100 SM00052 Putative diguanylate phosphodiesterase AL541_RS06100 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL541_RS06100 SM00091 PAS domain AL541_RS06100 SM00267 diguanylate cyclase AL541_RS06105 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_RS06135 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AL541_RS06140 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_RS06165 SM00382 ATPases associated with a variety of cellular activities AL541_RS06190 SM00382 ATPases associated with a variety of cellular activities AL541_RS06195 SM00382 ATPases associated with a variety of cellular activities AL541_RS06250 SM00267 diguanylate cyclase AL541_RS06250 SM01079 AL541_RS06250 AL541_RS06255 SM00479 AL541_RS06255 AL541_RS06290 SM00382 ATPases associated with a variety of cellular activities AL541_RS06290 SM00487 DEAD-like helicases superfamily AL541_RS06290 SM00490 helicase superfamily c-terminal domain AL541_RS06290 SM00847 Helicase associated domain (HA2) Add an annotation AL541_RS06365 SM00382 ATPases associated with a variety of cellular activities AL541_RS06365 SM00448 cheY-homologous receiver domain AL541_RS06425 SM00448 cheY-homologous receiver domain AL541_RS06430 SM00267 diguanylate cyclase AL541_RS06445 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS06470 SM01144 AL541_RS06470 AL541_RS06485 SM00852 Probable molybdopterin binding domain AL541_RS06495 SM00382 ATPases associated with a variety of cellular activities AL541_RS06510 SM00382 ATPases associated with a variety of cellular activities AL541_RS06510 SM00448 cheY-homologous receiver domain AL541_RS06515 SM00387 Histidine kinase-like ATPases AL541_RS06515 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS06525 SM00382 ATPases associated with a variety of cellular activities AL541_RS06560 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL541_RS06710 SM00248 ankyrin repeats AL541_RS06745 SM00382 ATPases associated with a variety of cellular activities AL541_RS06775 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_RS06775 SM00419 helix_turn_helix, cAMP Regulatory protein AL541_RS06825 SM00897 FIST N domain AL541_RS06825 SM01204 AL541_RS06825 AL541_RS06830 SM00387 Histidine kinase-like ATPases AL541_RS06830 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS06830 SM00448 cheY-homologous receiver domain AL541_RS06880 SM00382 ATPases associated with a variety of cellular activities AL541_RS06890 SM00981 AL541_RS06890 AL541_RS06925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL541_RS06925 SM00245 tail specific protease AL541_RS06930 SM00945 ProQ/FINO family AL541_RS06940 SM00382 ATPases associated with a variety of cellular activities AL541_RS06995 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS07010 SM00382 ATPases associated with a variety of cellular activities AL541_RS07035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS07040 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL541_RS07060 SM00112 Cadherin repeats. AL541_RS07060 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AL541_RS07060 SM00327 von Willebrand factor (vWF) type A domain AL541_RS07060 SM00736 Dystroglycan-type cadherin-like domains. AL541_RS07090 SM00028 Tetratricopeptide repeats AL541_RS07090 SM00267 diguanylate cyclase AL541_RS07095 SM00346 helix_turn_helix isocitrate lyase regulation AL541_RS07135 SM00829 Enoylreductase AL541_RS07140 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS07150 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS07150 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL541_RS07160 SM00829 Enoylreductase AL541_RS07170 SM00382 ATPases associated with a variety of cellular activities AL541_RS07180 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS07180 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL541_RS07230 SM00530 Helix-turn-helix XRE-family like proteins AL541_RS07255 SM00020 Trypsin-like serine protease AL541_RS07255 SM00495 Chitin-binding domain type 3 AL541_RS07290 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS07290 SM00895 AL541_RS07290 AL541_RS07395 SM00382 ATPases associated with a variety of cellular activities AL541_RS07435 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS07535 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS07560 SM00382 ATPases associated with a variety of cellular activities AL541_RS07575 SM01350 AL541_RS07575 AL541_RS07590 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS07590 SM00871 Bacterial transcription activator, effector binding domain AL541_RS07600 SM00448 cheY-homologous receiver domain AL541_RS07605 SM00091 PAS domain AL541_RS07605 SM00387 Histidine kinase-like ATPases AL541_RS07690 SM00155 Phospholipase D. Active site motifs. AL541_RS07735 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL541_RS07745 SM01266 AL541_RS07745 AL541_RS08110 SM00860 SMI1 / KNR4 family AL541_RS08225 SM00901 AL541_RS08225 AL541_RS08325 SM00974 AL541_RS08325 AL541_RS08675 SM00255 Toll - interleukin 1 - resistance AL541_RS08905 SM00530 Helix-turn-helix XRE-family like proteins AL541_RS09005 SM00382 ATPases associated with a variety of cellular activities AL541_RS09010 SM00823 Phosphopantetheine attachment site AL541_RS09010 SM00824 Thioesterase AL541_RS09015 SM00923 MbtH-like protein AL541_RS09045 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_RS09045 SM00419 helix_turn_helix, cAMP Regulatory protein AL541_RS09050 SM00028 Tetratricopeptide repeats AL541_RS09120 SM00954 Region found in RelA / SpoT proteins AL541_RS09495 SM00357 Cold shock protein domain AL541_RS09550 SM00091 PAS domain AL541_RS09550 SM00382 ATPases associated with a variety of cellular activities AL541_RS09585 SM00387 Histidine kinase-like ATPases AL541_RS09585 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS09585 SM00448 cheY-homologous receiver domain AL541_RS09610 SM00052 Putative diguanylate phosphodiesterase AL541_RS09625 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS09625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS09640 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS09665 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_RS09665 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_RS09670 SM00479 AL541_RS09670 AL541_RS09675 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS09675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS09685 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_RS09690 SM00421 helix_turn_helix, Lux Regulon AL541_RS09690 SM00448 cheY-homologous receiver domain AL541_RS09695 SM00387 Histidine kinase-like ATPases AL541_RS09695 SM01049 AL541_RS09695 AL541_RS09725 SM00849 Metallo-beta-lactamase superfamily AL541_RS09815 SM00434 DNA Topoisomerase IV AL541_RS09845 SM00852 Probable molybdopterin binding domain AL541_RS09900 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL541_RS09900 SM00465 GIY-YIG type nucleases (URI domain) AL541_RS09905 SM00421 helix_turn_helix, Lux Regulon AL541_RS09905 SM00448 cheY-homologous receiver domain AL541_RS09910 SM00486 DNA polymerase type-B family AL541_RS09920 SM00841 Elongation factor P, C-terminal AL541_RS09920 SM01185 AL541_RS09920 AL541_RS09930 SM00363 S4 RNA-binding domain AL541_RS09945 SM00481 DNA polymerase alpha chain like domain AL541_RS09985 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_RS09985 SM00419 helix_turn_helix, cAMP Regulatory protein AL541_RS10010 SM00387 Histidine kinase-like ATPases AL541_RS10010 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS10010 SM00448 cheY-homologous receiver domain AL541_RS10060 SM00052 Putative diguanylate phosphodiesterase AL541_RS10060 SM00091 PAS domain AL541_RS10065 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_RS10095 SM00448 cheY-homologous receiver domain AL541_RS10095 SM00862 Transcriptional regulatory protein, C terminal AL541_RS10100 SM00387 Histidine kinase-like ATPases AL541_RS10100 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS10105 SM00220 Serine/Threonine protein kinases, catalytic domain AL541_RS10105 SM00364 Leucine-rich repeats, bacterial type AL541_RS10105 SM00369 Leucine-rich repeats, typical (most populated) subfamily AL541_RS10155 SM00382 ATPases associated with a variety of cellular activities AL541_RS10210 SM00421 helix_turn_helix, Lux Regulon AL541_RS10210 SM00448 cheY-homologous receiver domain AL541_RS10215 SM00387 Histidine kinase-like ATPases AL541_RS10215 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS10230 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL541_RS10275 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AL541_RS10280 SM00028 Tetratricopeptide repeats AL541_RS10290 SM00411 bacterial (prokaryotic) histone like domain AL541_RS10295 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_RS10310 SM00822 AL541_RS10310 AL541_RS10325 SM00481 DNA polymerase alpha chain like domain AL541_RS10330 SM00260 Two component signalling adaptor domain AL541_RS10330 SM00448 cheY-homologous receiver domain AL541_RS10405 SM00825 Beta-ketoacyl synthase AL541_RS10415 SM00822 AL541_RS10415 AL541_RS10420 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AL541_RS10450 SM00363 S4 RNA-binding domain AL541_RS10460 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_RS10475 SM00226 Low molecular weight phosphatase family AL541_RS10520 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS10545 SM00267 diguanylate cyclase AL541_RS10550 SM00642 Alpha-amylase domain AL541_RS10555 SM00382 ATPases associated with a variety of cellular activities AL541_RS10595 SM00382 ATPases associated with a variety of cellular activities AL541_RS10600 SM00382 ATPases associated with a variety of cellular activities AL541_RS10635 SM00852 Probable molybdopterin binding domain AL541_RS10640 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_RS10655 SM00382 ATPases associated with a variety of cellular activities AL541_RS10655 SM00448 cheY-homologous receiver domain AL541_RS10660 SM00487 DEAD-like helicases superfamily AL541_RS10660 SM00490 helicase superfamily c-terminal domain AL541_RS10695 SM00900 AL541_RS10695 AL541_RS10705 SM00478 endonuclease III AL541_RS10705 SM00525 AL541_RS10705 AL541_RS10730 SM00479 AL541_RS10730 AL541_RS10795 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL541_RS10850 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL541_RS10850 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL541_RS10850 SM00493 AL541_RS10850 AL541_RS10875 SM00870 AL541_RS10875 AL541_RS10895 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_RS10905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS10905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS10930 SM00098 Alkaline phosphatase homologues AL541_RS10975 SM00493 AL541_RS10975 AL541_RS10985 SM00382 ATPases associated with a variety of cellular activities AL541_RS11005 SM00448 cheY-homologous receiver domain AL541_RS11055 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL541_RS11070 SM00825 Beta-ketoacyl synthase AL541_RS11120 SM00463 Small MutS-related domain AL541_RS11125 SM00855 Phosphoglycerate mutase family AL541_RS11220 SM00382 ATPases associated with a variety of cellular activities AL541_RS11230 SM00260 Two component signalling adaptor domain AL541_RS11235 SM00260 Two component signalling adaptor domain AL541_RS11245 SM00448 cheY-homologous receiver domain AL541_RS11250 SM00073 Histidine Phosphotransfer domain AL541_RS11250 SM00260 Two component signalling adaptor domain AL541_RS11250 SM00387 Histidine kinase-like ATPases AL541_RS11250 SM01231 AL541_RS11250 AL541_RS11260 SM00448 cheY-homologous receiver domain AL541_RS11275 SM00382 ATPases associated with a variety of cellular activities AL541_RS11275 SM00962 SRP54-type protein, GTPase domain AL541_RS11340 SM00382 ATPases associated with a variety of cellular activities AL541_RS11365 SM00382 ATPases associated with a variety of cellular activities AL541_RS11365 SM00448 cheY-homologous receiver domain AL541_RS11370 SM00387 Histidine kinase-like ATPases AL541_RS11370 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS11375 SM00382 ATPases associated with a variety of cellular activities AL541_RS11470 SM01130 AL541_RS11470 AL541_RS11495 SM00028 Tetratricopeptide repeats AL541_RS11580 SM00479 AL541_RS11580 AL541_RS11595 SM00849 Metallo-beta-lactamase superfamily AL541_RS11600 SM00257 Lysin motif AL541_RS11615 SM00938 Nitrogen regulatory protein P-II AL541_RS11625 SM00977 TilS substrate C-terminal domain AL541_RS11635 SM00481 DNA polymerase alpha chain like domain AL541_RS11665 SM00935 Outer membrane protein (OmpH-like) AL541_RS11675 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL541_RS11720 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_RS11780 SM00849 Metallo-beta-lactamase superfamily AL541_RS11845 SM00495 Chitin-binding domain type 3 AL541_RS11845 SM00636 AL541_RS11845 AL541_RS11860 SM00487 DEAD-like helicases superfamily AL541_RS11860 SM00490 helicase superfamily c-terminal domain AL541_RS11875 SM00267 diguanylate cyclase AL541_RS11875 SM00448 cheY-homologous receiver domain AL541_RS11905 SM00900 AL541_RS11905 AL541_RS11965 SM00464 Found in ATP-dependent protease La (LON) AL541_RS11995 SM00267 diguanylate cyclase AL541_RS12010 SM00925 MltA specific insert domain AL541_RS12125 SM00420 helix_turn_helix, Deoxyribose operon repressor AL541_RS12125 SM01134 AL541_RS12125 AL541_RS12155 SM00354 helix_turn _helix lactose operon repressor AL541_RS12170 SM00421 helix_turn_helix, Lux Regulon AL541_RS12215 SM00838 Elongation factor G C-terminus AL541_RS12215 SM00889 Elongation factor G, domain IV AL541_RS12220 SM00382 ATPases associated with a variety of cellular activities AL541_RS12250 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AL541_RS12255 SM01133 AL541_RS12255 AL541_RS12310 SM00052 Putative diguanylate phosphodiesterase AL541_RS12310 SM00091 PAS domain AL541_RS12310 SM00267 diguanylate cyclase AL541_RS12330 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_RS12335 SM00028 Tetratricopeptide repeats AL541_RS12340 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_RS12340 SM00322 K homology RNA-binding domain AL541_RS12345 SM01387 AL541_RS12345 AL541_RS12365 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_RS12405 SM00382 ATPases associated with a variety of cellular activities AL541_RS12415 SM01103 AL541_RS12415 AL541_RS12440 SM00363 S4 RNA-binding domain AL541_RS12480 SM00091 PAS domain AL541_RS12480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS12480 SM00387 Histidine kinase-like ATPases AL541_RS12480 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS12480 SM00448 cheY-homologous receiver domain AL541_RS12500 SM00382 ATPases associated with a variety of cellular activities AL541_RS12505 SM00382 ATPases associated with a variety of cellular activities AL541_RS12525 SM01068 Putative carbohydrate binding domain AL541_RS12535 SM00382 ATPases associated with a variety of cellular activities AL541_RS12555 SM00938 Nitrogen regulatory protein P-II AL541_RS12580 SM00487 DEAD-like helicases superfamily AL541_RS12580 SM00490 helicase superfamily c-terminal domain AL541_RS12580 SM00847 Helicase associated domain (HA2) Add an annotation AL541_RS12635 SM00382 ATPases associated with a variety of cellular activities AL541_RS12645 SM00947 Carbonic anhydrase AL541_RS12675 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS12675 SM00895 AL541_RS12675 AL541_RS12680 SM00644 AL541_RS12680 AL541_RS12745 SM00382 ATPases associated with a variety of cellular activities AL541_RS12745 SM00962 SRP54-type protein, GTPase domain AL541_RS12745 SM00963 SRP54-type protein, helical bundle domain AL541_RS12755 SM01091 Transporter associated domain AL541_RS12785 SM00829 Enoylreductase AL541_RS12865 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL541_RS12875 SM00382 ATPases associated with a variety of cellular activities AL541_RS12885 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AL541_RS12885 SM00534 ATPase domain of DNA mismatch repair MUTS family AL541_RS12895 SM00257 Lysin motif AL541_RS12930 SM01192 AL541_RS12930 AL541_RS12930 SM01193 AL541_RS12930 AL541_RS12945 SM00954 Region found in RelA / SpoT proteins AL541_RS12965 SM00073 Histidine Phosphotransfer domain AL541_RS12965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS12965 SM00387 Histidine kinase-like ATPases AL541_RS12965 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS12965 SM00448 cheY-homologous receiver domain AL541_RS12990 SM00358 Double-stranded RNA binding motif AL541_RS12990 SM00535 Ribonuclease III family AL541_RS13000 SM00838 Elongation factor G C-terminus AL541_RS13140 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_RS13155 SM00861 Transketolase, pyrimidine binding domain AL541_RS13175 SM00731 SprT homologues. AL541_RS13200 SM00732 Likely ribonuclease with RNase H fold. AL541_RS13210 SM00382 ATPases associated with a variety of cellular activities AL541_RS13230 SM01152 AL541_RS13230 AL541_RS13245 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_RS13265 SM00478 endonuclease III AL541_RS13265 SM00525 AL541_RS13265 AL541_RS13315 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS13315 SM01049 AL541_RS13315 AL541_RS13395 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_RS13400 SM00354 helix_turn _helix lactose operon repressor AL541_RS13430 SM00495 Chitin-binding domain type 3 AL541_RS13570 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_RS13615 SM00563 Phosphate acyltransferases AL541_RS13650 SM00382 ATPases associated with a variety of cellular activities AL541_RS13660 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_RS13675 SM00382 ATPases associated with a variety of cellular activities AL541_RS13705 SM00924 MgtE intracellular N domain AL541_RS13735 SM00487 DEAD-like helicases superfamily AL541_RS13735 SM00490 helicase superfamily c-terminal domain AL541_RS13740 SM00670 Large family of predicted nucleotide-binding domains AL541_RS13760 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_RS13830 SM00382 ATPases associated with a variety of cellular activities AL541_RS13835 SM00028 Tetratricopeptide repeats AL541_RS13845 SM00965 Secretin and TonB N terminus short domain AL541_RS13865 SM00052 Putative diguanylate phosphodiesterase AL541_RS13865 SM00267 diguanylate cyclase AL541_RS13875 SM00421 helix_turn_helix, Lux Regulon AL541_RS13910 SM01018 B12 binding domain AL541_RS14030 SM01005 Alanine racemase, C-terminal domain AL541_RS14090 SM00965 Secretin and TonB N terminus short domain AL541_RS14110 SM00842 Cell division protein FtsA AL541_RS14155 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL541_RS14195 SM00919 Malic enzyme, NAD binding domain AL541_RS14195 SM01274 AL541_RS14195 AL541_RS14215 SM00838 Elongation factor G C-terminus AL541_RS14215 SM00889 Elongation factor G, domain IV AL541_RS14255 SM00320 WD40 repeats AL541_RS14295 SM00382 ATPases associated with a variety of cellular activities AL541_RS14320 SM00100 Cyclic nucleotide-monophosphate binding domain AL541_RS14320 SM00419 helix_turn_helix, cAMP Regulatory protein AL541_RS14325 SM01150 AL541_RS14325 AL541_RS14370 SM00967 RNA 2'-O ribose methyltransferase substrate binding AL541_RS14375 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_RS14375 SM00357 Cold shock protein domain AL541_RS14375 SM00955 AL541_RS14375 AL541_RS14390 SM00671 Sel1-like repeats. AL541_RS14400 SM00788 Adenylosuccinate synthetase AL541_RS14410 SM00244 prohibitin homologues AL541_RS14415 SM00244 prohibitin homologues AL541_RS14435 SM00853 MutL C terminal dimerisation domain AL541_RS14435 SM01340 AL541_RS14435 AL541_RS14440 SM00257 Lysin motif AL541_RS14440 SM00646 AL541_RS14440 AL541_RS14520 SM00479 AL541_RS14520 AL541_RS14550 SM00450 Rhodanese Homology Domain AL541_RS14565 SM00971 Serine acetyltransferase, N-terminal AL541_RS14620 SM00841 Elongation factor P, C-terminal AL541_RS14620 SM01185 AL541_RS14620 AL541_RS14645 SM00883 Chaperonin 10 Kd subunit AL541_RS14670 SM00448 cheY-homologous receiver domain AL541_RS14670 SM00862 Transcriptional regulatory protein, C terminal AL541_RS14675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS14675 SM00387 Histidine kinase-like ATPases AL541_RS14675 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS14710 SM00421 helix_turn_helix, Lux Regulon AL541_RS14710 SM00448 cheY-homologous receiver domain AL541_RS14715 SM01091 Transporter associated domain AL541_RS14745 SM00387 Histidine kinase-like ATPases AL541_RS14745 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS14745 SM00448 cheY-homologous receiver domain AL541_RS14760 SM00479 AL541_RS14760 AL541_RS14780 SM00878 Biotin carboxylase C-terminal domain AL541_RS14810 SM00382 ATPases associated with a variety of cellular activities AL541_RS14880 SM00862 Transcriptional regulatory protein, C terminal AL541_RS14885 SM00422 helix_turn_helix, mercury resistance AL541_RS14895 SM00798 AICARFT/IMPCHase bienzyme AL541_RS14895 SM00851 MGS-like domain AL541_RS14900 SM01209 AL541_RS14900 AL541_RS14900 SM01210 AL541_RS14900 AL541_RS14910 SM00411 bacterial (prokaryotic) histone like domain AL541_RS14915 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_RS14930 SM00986 Uracil DNA glycosylase superfamily AL541_RS14930 SM00987 UreE urease accessory protein, C-terminal domain AL541_RS14950 SM00663 RNA polymerase I subunit A N-terminus AL541_RS14975 SM00649 Ribosomal protein L11/L12 AL541_RS14980 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL541_RS14980 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL541_RS15045 SM00155 Phospholipase D. Active site motifs. AL541_RS15105 SM00360 RNA recognition motif AL541_RS15170 SM00563 Phosphate acyltransferases AL541_RS15195 SM00450 Rhodanese Homology Domain AL541_RS15215 SM00382 ATPases associated with a variety of cellular activities AL541_RS15220 SM00382 ATPases associated with a variety of cellular activities AL541_RS15220 SM00962 SRP54-type protein, GTPase domain AL541_RS15220 SM00963 SRP54-type protein, helical bundle domain AL541_RS15280 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_RS15285 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL541_RS15290 SM00052 Putative diguanylate phosphodiesterase AL541_RS15320 SM01144 AL541_RS15320 AL541_RS15325 SM00052 Putative diguanylate phosphodiesterase AL541_RS15325 SM00897 FIST N domain AL541_RS15325 SM01204 AL541_RS15325 AL541_RS15360 SM01219 AL541_RS15360 AL541_RS15385 SM00028 Tetratricopeptide repeats AL541_RS15445 SM00357 Cold shock protein domain AL541_RS15445 SM00382 ATPases associated with a variety of cellular activities AL541_RS15445 SM00959 Rho termination factor, N-terminal domain AL541_RS15455 SM00487 DEAD-like helicases superfamily AL541_RS15455 SM00490 helicase superfamily c-terminal domain AL541_RS15485 SM00341 Helicase and RNase D C-terminal AL541_RS15485 SM00487 DEAD-like helicases superfamily AL541_RS15485 SM00490 helicase superfamily c-terminal domain AL541_RS15485 SM00956 AL541_RS15485 AL541_RS15495 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS15560 SM00876 Biotin and Thiamin Synthesis associated domain AL541_RS15665 SM01001 AIR carboxylase AL541_RS15695 SM00257 Lysin motif AL541_RS15765 SM00563 Phosphate acyltransferases AL541_RS15775 SM00382 ATPases associated with a variety of cellular activities AL541_RS15815 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS15835 SM00382 ATPases associated with a variety of cellular activities AL541_RS15875 SM00470 ParB-like nuclease domain AL541_RS15890 SM01228 AL541_RS15890 AL541_RS15910 SM01234 AL541_RS15910 AL541_RS15925 SM00382 ATPases associated with a variety of cellular activities AL541_RS15935 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS15935 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL541_RS15945 SM00382 ATPases associated with a variety of cellular activities AL541_RS15945 SM00760 Bacterial dnaA protein helix-turn-helix domain AL541_RS15950 SM00480 DNA polymerase III beta subunit AL541_RS15960 SM00387 Histidine kinase-like ATPases AL541_RS15960 SM00433 TopoisomeraseII AL541_RS15990 SM00642 Alpha-amylase domain AL541_RS16030 SM00829 Enoylreductase AL541_RS16170 SM00382 ATPases associated with a variety of cellular activities AL541_RS16220 SM00220 Serine/Threonine protein kinases, catalytic domain AL541_RS16225 SM00354 helix_turn _helix lactose operon repressor AL541_RS16290 SM00344 helix_turn_helix ASNC type AL541_RS16295 SM00052 Putative diguanylate phosphodiesterase AL541_RS16295 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL541_RS16295 SM00091 PAS domain AL541_RS16295 SM00267 diguanylate cyclase AL541_RS16335 SM00382 ATPases associated with a variety of cellular activities AL541_RS16340 SM00749 bacterial OsmY and nodulation domain AL541_RS16360 SM00046 Diacylglycerol kinase catalytic domain (presumed) AL541_RS16360 SM00195 Dual specificity phosphatase, catalytic domain AL541_RS16360 SM00404 Protein tyrosine phosphatase, catalytic domain motif AL541_RS16395 SM00052 Putative diguanylate phosphodiesterase AL541_RS16395 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL541_RS16395 SM00091 PAS domain AL541_RS16395 SM00267 diguanylate cyclase AL541_RS16455 SM01004 Delta-aminolevulinic acid dehydratase AL541_RS16470 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL541_RS16470 SM00474 3'-5' exonuclease AL541_RS16470 SM00475 5'-3' exonuclease AL541_RS16470 SM00482 DNA polymerase A domain AL541_RS16505 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_RS16515 SM00052 Putative diguanylate phosphodiesterase AL541_RS16515 SM00267 diguanylate cyclase AL541_RS16515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS16520 SM00382 ATPases associated with a variety of cellular activities AL541_RS16520 SM00448 cheY-homologous receiver domain AL541_RS16525 SM00091 PAS domain AL541_RS16525 SM00387 Histidine kinase-like ATPases AL541_RS16525 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS16535 SM01230 AL541_RS16535 AL541_RS16585 SM00363 S4 RNA-binding domain AL541_RS16600 SM00382 ATPases associated with a variety of cellular activities AL541_RS16680 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_RS16680 SM00732 Likely ribonuclease with RNase H fold. AL541_RS16700 SM00448 cheY-homologous receiver domain AL541_RS16700 SM00862 Transcriptional regulatory protein, C terminal AL541_RS16705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS16705 SM00387 Histidine kinase-like ATPases AL541_RS16705 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS16715 SM00487 DEAD-like helicases superfamily AL541_RS16715 SM00490 helicase superfamily c-terminal domain AL541_RS16725 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_RS16725 SM00954 Region found in RelA / SpoT proteins AL541_RS16730 SM01409 AL541_RS16730 AL541_RS16735 SM00072 Guanylate kinase homologues. AL541_RS16745 SM00028 Tetratricopeptide repeats AL541_RS16800 SM00382 ATPases associated with a variety of cellular activities AL541_RS16805 SM00382 ATPases associated with a variety of cellular activities AL541_RS16855 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS16855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS16855 SM01049 AL541_RS16855 AL541_RS16880 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AL541_RS16880 SM01232 AL541_RS16880 AL541_RS16890 SM00672 Putative lipopolysaccharide-modifying enzyme. AL541_RS17120 SM00984 UDP binding domain AL541_RS17130 SM00849 Metallo-beta-lactamase superfamily AL541_RS17130 SM01027 Beta-Casp domain AL541_RS17175 SM00382 ATPases associated with a variety of cellular activities AL541_RS17200 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL541_RS17205 SM00642 Alpha-amylase domain AL541_RS17210 SM00422 helix_turn_helix, mercury resistance AL541_RS17245 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS17245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS17280 SM01007 Class II Aldolase and Adducin N-terminal domain AL541_RS17295 SM00420 helix_turn_helix, Deoxyribose operon repressor AL541_RS17295 SM01134 AL541_RS17295 AL541_RS17310 SM00382 ATPases associated with a variety of cellular activities AL541_RS17315 SM00382 ATPases associated with a variety of cellular activities AL541_RS17330 SM00260 Two component signalling adaptor domain AL541_RS17330 SM00448 cheY-homologous receiver domain AL541_RS17350 SM00729 Elongator protein 3, MiaB family, Radical SAM AL541_RS17380 SM00382 ATPases associated with a variety of cellular activities AL541_RS17480 SM00382 ATPases associated with a variety of cellular activities AL541_RS17485 SM00382 ATPases associated with a variety of cellular activities AL541_RS17490 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS17525 SM00382 ATPases associated with a variety of cellular activities AL541_RS17585 SM01022 AL541_RS17585 AL541_RS17595 SM00829 Enoylreductase AL541_RS17605 SM01060 AL541_RS17605 AL541_RS17625 SM00849 Metallo-beta-lactamase superfamily AL541_RS17630 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL541_RS17630 SM00382 ATPases associated with a variety of cellular activities AL541_RS17695 SM00448 cheY-homologous receiver domain AL541_RS17695 SM00862 Transcriptional regulatory protein, C terminal AL541_RS17700 SM00387 Histidine kinase-like ATPases AL541_RS17700 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS17705 SM00382 ATPases associated with a variety of cellular activities AL541_RS17715 SM00382 ATPases associated with a variety of cellular activities AL541_RS17740 SM00382 ATPases associated with a variety of cellular activities AL541_RS17750 SM00421 helix_turn_helix, Lux Regulon AL541_RS17755 SM00421 helix_turn_helix, Lux Regulon AL541_RS17765 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS17765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS17785 SM00327 von Willebrand factor (vWF) type A domain AL541_RS17790 SM00327 von Willebrand factor (vWF) type A domain AL541_RS17800 SM00267 diguanylate cyclase AL541_RS17805 SM00382 ATPases associated with a variety of cellular activities AL541_RS17825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS17825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS17855 SM00487 DEAD-like helicases superfamily AL541_RS17855 SM00490 helicase superfamily c-terminal domain AL541_RS17865 SM00257 Lysin motif AL541_RS17875 SM00422 helix_turn_helix, mercury resistance AL541_RS17895 SM00028 Tetratricopeptide repeats AL541_RS17900 SM00267 diguanylate cyclase AL541_RS17920 SM00382 ATPases associated with a variety of cellular activities AL541_RS17955 SM00587 ZnF_C4 abd HLH domain containing kinases domain AL541_RS17975 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS17975 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS17990 SM00382 ATPases associated with a variety of cellular activities AL541_RS18025 SM01057 Eukaryotic-type carbonic anhydrase AL541_RS18030 SM00972 Spore Coat Protein U domain AL541_RS18045 SM00972 Spore Coat Protein U domain AL541_RS18050 SM00972 Spore Coat Protein U domain AL541_RS18055 SM00829 Enoylreductase AL541_RS18065 SM00052 Putative diguanylate phosphodiesterase AL541_RS18065 SM00267 diguanylate cyclase AL541_RS18070 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS18085 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS18090 SM00448 cheY-homologous receiver domain AL541_RS18090 SM00862 Transcriptional regulatory protein, C terminal AL541_RS18135 SM00481 DNA polymerase alpha chain like domain AL541_RS18155 SM00020 Trypsin-like serine protease AL541_RS18165 SM00382 ATPases associated with a variety of cellular activities AL541_RS18190 SM00382 ATPases associated with a variety of cellular activities AL541_RS18350 SM00387 Histidine kinase-like ATPases AL541_RS18350 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS18355 SM00448 cheY-homologous receiver domain AL541_RS18355 SM00862 Transcriptional regulatory protein, C terminal AL541_RS18470 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS18475 SM00642 Alpha-amylase domain AL541_RS18480 SM00936 Penicillin-binding protein 5, C-terminal domain AL541_RS18490 SM00450 Rhodanese Homology Domain AL541_RS18505 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AL541_RS18535 SM00226 Low molecular weight phosphatase family AL541_RS18610 SM00642 Alpha-amylase domain AL541_RS18620 SM00642 Alpha-amylase domain AL541_RS18635 SM00421 helix_turn_helix, Lux Regulon AL541_RS18680 SM00671 Sel1-like repeats. AL541_RS18685 SM00642 Alpha-amylase domain AL541_RS18695 SM00642 Alpha-amylase domain AL541_RS18715 SM00642 Alpha-amylase domain AL541_RS18770 SM00354 helix_turn _helix lactose operon repressor AL541_RS18805 SM00354 helix_turn _helix lactose operon repressor AL541_RS18810 SM00857 Resolvase, N terminal domain AL541_RS18845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS18845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS18850 SM00382 ATPases associated with a variety of cellular activities AL541_RS18910 SM00387 Histidine kinase-like ATPases AL541_RS18915 SM00448 cheY-homologous receiver domain AL541_RS18915 SM00862 Transcriptional regulatory protein, C terminal AL541_RS18945 SM00382 ATPases associated with a variety of cellular activities AL541_RS18970 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS18975 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS18975 SM00871 Bacterial transcription activator, effector binding domain AL541_RS19000 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_RS19065 SM00829 Enoylreductase AL541_RS19070 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS19080 SM00487 DEAD-like helicases superfamily AL541_RS19080 SM00490 helicase superfamily c-terminal domain AL541_RS19090 SM00382 ATPases associated with a variety of cellular activities AL541_RS19100 SM00344 helix_turn_helix ASNC type AL541_RS19120 SM00360 RNA recognition motif AL541_RS19145 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS19150 SM00421 helix_turn_helix, Lux Regulon AL541_RS19160 SM00387 Histidine kinase-like ATPases AL541_RS19165 SM00448 cheY-homologous receiver domain AL541_RS19180 SM00052 Putative diguanylate phosphodiesterase AL541_RS19180 SM00267 diguanylate cyclase AL541_RS19185 SM00382 ATPases associated with a variety of cellular activities AL541_RS19260 SM00470 ParB-like nuclease domain AL541_RS19280 SM00382 ATPases associated with a variety of cellular activities AL541_RS19285 SM00382 ATPases associated with a variety of cellular activities AL541_RS19305 SM00387 Histidine kinase-like ATPases AL541_RS19305 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS19305 SM00448 cheY-homologous receiver domain AL541_RS19330 SM00382 ATPases associated with a variety of cellular activities AL541_RS19350 SM00387 Histidine kinase-like ATPases AL541_RS19355 SM00448 cheY-homologous receiver domain AL541_RS19355 SM00850 LytTr DNA-binding domain AL541_RS19365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS19365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS19365 SM01049 AL541_RS19365 AL541_RS19395 SM00382 ATPases associated with a variety of cellular activities AL541_RS19400 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS19450 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS19450 SM01009 AlkA N-terminal domain AL541_RS19495 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL541_RS19495 SM00495 Chitin-binding domain type 3 AL541_RS19495 SM00636 AL541_RS19495 AL541_RS19515 SM00267 diguanylate cyclase AL541_RS19535 SM00849 Metallo-beta-lactamase superfamily AL541_RS19555 SM00267 diguanylate cyclase AL541_RS19570 SM00829 Enoylreductase AL541_RS19595 SM00344 helix_turn_helix ASNC type AL541_RS19600 SM00495 Chitin-binding domain type 3 AL541_RS19695 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS19730 SM00822 AL541_RS19730 AL541_RS19750 SM00014 Acid phosphatase homologues AL541_RS19780 SM00382 ATPases associated with a variety of cellular activities AL541_RS19875 SM00448 cheY-homologous receiver domain AL541_RS19875 SM00862 Transcriptional regulatory protein, C terminal AL541_RS19880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS19880 SM00387 Histidine kinase-like ATPases AL541_RS19880 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS19960 SM00382 ATPases associated with a variety of cellular activities AL541_RS20000 SM00849 Metallo-beta-lactamase superfamily AL541_RS20055 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL541_RS20055 SM00387 Histidine kinase-like ATPases AL541_RS20060 SM00382 ATPases associated with a variety of cellular activities AL541_RS20060 SM00448 cheY-homologous receiver domain AL541_RS20065 SM00267 diguanylate cyclase AL541_RS20165 SM00267 diguanylate cyclase AL541_RS20165 SM01079 AL541_RS20165 AL541_RS20170 SM00530 Helix-turn-helix XRE-family like proteins AL541_RS20180 SM00267 diguanylate cyclase AL541_RS20215 SM01266 AL541_RS20215 AL541_RS20275 SM01057 Eukaryotic-type carbonic anhydrase AL541_RS20295 SM00382 ATPases associated with a variety of cellular activities AL541_RS20345 SM00354 helix_turn _helix lactose operon repressor AL541_RS20370 SM00382 ATPases associated with a variety of cellular activities AL541_RS20380 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS20380 SM00866 AL541_RS20380 AL541_RS20410 SM00631 AL541_RS20410 AL541_RS20475 SM00858 AL541_RS20475 AL541_RS20550 SM01240 AL541_RS20550 AL541_RS20565 SM00450 Rhodanese Homology Domain AL541_RS20570 SM00883 Chaperonin 10 Kd subunit AL541_RS20610 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS20640 SM00420 helix_turn_helix, Deoxyribose operon repressor AL541_RS20640 SM01134 AL541_RS20640 AL541_RS20715 SM00382 ATPases associated with a variety of cellular activities AL541_RS20755 SM00838 Elongation factor G C-terminus AL541_RS20755 SM00889 Elongation factor G, domain IV AL541_RS20765 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AL541_RS20790 SM00422 helix_turn_helix, mercury resistance AL541_RS20800 SM00028 Tetratricopeptide repeats AL541_RS20805 SM01022 AL541_RS20805 AL541_RS20815 SM00155 Phospholipase D. Active site motifs. AL541_RS20865 SM00382 ATPases associated with a variety of cellular activities AL541_RS20890 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS20890 SM00866 AL541_RS20890 AL541_RS20925 SM00421 helix_turn_helix, Lux Regulon AL541_RS20945 SM00870 AL541_RS20945 AL541_RS20950 SM00788 Adenylosuccinate synthetase AL541_RS20985 SM00344 helix_turn_helix ASNC type AL541_RS21000 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS21005 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS21020 SM00829 Enoylreductase AL541_RS21050 SM00487 DEAD-like helicases superfamily AL541_RS21050 SM00490 helicase superfamily c-terminal domain AL541_RS21085 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS21085 SM00871 Bacterial transcription activator, effector binding domain AL541_RS21125 SM00822 AL541_RS21125 AL541_RS21160 SM00354 helix_turn _helix lactose operon repressor AL541_RS21175 SM00640 Glycosyl hydrolases family 32 AL541_RS21200 SM00936 Penicillin-binding protein 5, C-terminal domain AL541_RS21230 SM00357 Cold shock protein domain AL541_RS21275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS21275 SM00387 Histidine kinase-like ATPases AL541_RS21275 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS21280 SM00448 cheY-homologous receiver domain AL541_RS21280 SM00862 Transcriptional regulatory protein, C terminal AL541_RS21325 SM00563 Phosphate acyltransferases AL541_RS21335 SM00530 Helix-turn-helix XRE-family like proteins AL541_RS21340 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL541_RS21355 SM00924 MgtE intracellular N domain AL541_RS21375 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS21390 SM00448 cheY-homologous receiver domain AL541_RS21390 SM00862 Transcriptional regulatory protein, C terminal AL541_RS21395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS21395 SM00387 Histidine kinase-like ATPases AL541_RS21395 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS21405 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS21420 SM00344 helix_turn_helix ASNC type AL541_RS21440 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL541_RS21445 SM00387 Histidine kinase-like ATPases AL541_RS21445 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS21445 SM00448 cheY-homologous receiver domain AL541_RS21470 SM00465 GIY-YIG type nucleases (URI domain) AL541_RS21485 SM00387 Histidine kinase-like ATPases AL541_RS21485 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS21485 SM00448 cheY-homologous receiver domain AL541_RS21490 SM00347 helix_turn_helix multiple antibiotic resistance protein AL541_RS21515 SM00344 helix_turn_helix ASNC type AL541_RS21565 SM00822 AL541_RS21565 AL541_RS21600 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL541_RS21615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS21615 SM00387 Histidine kinase-like ATPases AL541_RS21620 SM00421 helix_turn_helix, Lux Regulon AL541_RS21620 SM00448 cheY-homologous receiver domain AL541_RS21655 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS21690 SM00091 PAS domain AL541_RS21690 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS21695 SM00861 Transketolase, pyrimidine binding domain AL541_RS21720 SM00450 Rhodanese Homology Domain AL541_RS21740 SM00852 Probable molybdopterin binding domain AL541_RS21775 SM00448 cheY-homologous receiver domain AL541_RS21790 SM01240 AL541_RS21790 AL541_RS21860 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS21925 SM00382 ATPases associated with a variety of cellular activities AL541_RS21930 SM00382 ATPases associated with a variety of cellular activities AL541_RS21930 SM01086 C-terminal, D2-small domain, of ClpB protein AL541_RS21965 SM00220 Serine/Threonine protein kinases, catalytic domain AL541_RS22000 SM00344 helix_turn_helix ASNC type AL541_RS22020 SM00240 Forkhead associated domain AL541_RS22070 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS22080 SM00822 AL541_RS22080 AL541_RS22125 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS22125 SM00866 AL541_RS22125 AL541_RS22145 SM00893 Electron transfer flavoprotein domain AL541_RS22150 SM00893 Electron transfer flavoprotein domain AL541_RS22165 SM00382 ATPases associated with a variety of cellular activities AL541_RS22190 SM00382 ATPases associated with a variety of cellular activities AL541_RS22280 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS22285 SM01266 AL541_RS22285 AL541_RS22310 SM00878 Biotin carboxylase C-terminal domain AL541_RS22330 SM00422 helix_turn_helix, mercury resistance AL541_RS22365 SM00822 AL541_RS22365 AL541_RS22370 SM00028 Tetratricopeptide repeats AL541_RS22370 SM00267 diguanylate cyclase AL541_RS22400 SM00382 ATPases associated with a variety of cellular activities AL541_RS22415 SM00244 prohibitin homologues AL541_RS22430 SM00387 Histidine kinase-like ATPases AL541_RS22430 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS22430 SM00448 cheY-homologous receiver domain AL541_RS22440 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL541_RS22495 SM00052 Putative diguanylate phosphodiesterase AL541_RS22495 SM00267 diguanylate cyclase AL541_RS22505 SM00382 ATPases associated with a variety of cellular activities AL541_RS22525 SM00354 helix_turn _helix lactose operon repressor AL541_RS22565 SM00382 ATPases associated with a variety of cellular activities AL541_RS22570 SM00422 helix_turn_helix, mercury resistance AL541_RS22575 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS22625 SM00851 MGS-like domain AL541_RS22635 SM00073 Histidine Phosphotransfer domain AL541_RS22635 SM00387 Histidine kinase-like ATPases AL541_RS22635 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS22635 SM00448 cheY-homologous receiver domain AL541_RS22650 SM00862 Transcriptional regulatory protein, C terminal AL541_RS22690 SM00327 von Willebrand factor (vWF) type A domain AL541_RS22695 SM00327 von Willebrand factor (vWF) type A domain AL541_RS22715 SM00046 Diacylglycerol kinase catalytic domain (presumed) AL541_RS22730 SM00990 AL541_RS22730 AL541_RS22765 SM00387 Histidine kinase-like ATPases AL541_RS22765 SM00448 cheY-homologous receiver domain AL541_RS22780 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS22780 SM00387 Histidine kinase-like ATPases AL541_RS22780 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS22780 SM00448 cheY-homologous receiver domain AL541_RS22785 SM00052 Putative diguanylate phosphodiesterase AL541_RS22785 SM00448 cheY-homologous receiver domain AL541_RS22790 SM00421 helix_turn_helix, Lux Regulon AL541_RS22790 SM00448 cheY-homologous receiver domain AL541_RS22795 SM00267 diguanylate cyclase AL541_RS22805 SM00421 helix_turn_helix, Lux Regulon AL541_RS22805 SM00448 cheY-homologous receiver domain AL541_RS22815 SM00260 Two component signalling adaptor domain AL541_RS22815 SM00448 cheY-homologous receiver domain AL541_RS22880 SM00704 CDGSH-type zinc finger. Function unknown. AL541_RS22895 SM00953 AL541_RS22895 AL541_RS22935 SM00924 MgtE intracellular N domain AL541_RS22975 SM00422 helix_turn_helix, mercury resistance AL541_RS23005 SM00382 ATPases associated with a variety of cellular activities AL541_RS23015 SM00479 AL541_RS23015 AL541_RS23065 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS23085 SM00849 Metallo-beta-lactamase superfamily AL541_RS23115 SM00530 Helix-turn-helix XRE-family like proteins AL541_RS23165 SM00354 helix_turn _helix lactose operon repressor AL541_RS23180 SM00052 Putative diguanylate phosphodiesterase AL541_RS23190 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS23190 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL541_RS23200 SM00382 ATPases associated with a variety of cellular activities AL541_RS23215 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS23225 SM00495 Chitin-binding domain type 3 AL541_RS23225 SM00636 AL541_RS23225 AL541_RS23265 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS23280 SM00487 DEAD-like helicases superfamily AL541_RS23280 SM00490 helicase superfamily c-terminal domain AL541_RS23285 SM00052 Putative diguanylate phosphodiesterase AL541_RS23305 SM00867 YceI-like domain AL541_RS23310 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_RS23345 SM00782 PhnA Zinc-Ribbon AL541_RS23410 SM00271 DnaJ molecular chaperone homology domain AL541_RS23420 SM00052 Putative diguanylate phosphodiesterase AL541_RS23420 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL541_RS23420 SM00267 diguanylate cyclase AL541_RS23435 SM00382 ATPases associated with a variety of cellular activities AL541_RS23450 SM00797 Allophanate hydrolase subunit 2 AL541_RS23455 SM00796 Allophanate hydrolase subunit 1 AL541_RS23465 SM00091 PAS domain AL541_RS23465 SM00267 diguanylate cyclase AL541_RS23465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS23490 SM00881 CoA binding domain AL541_RS23685 SM00448 cheY-homologous receiver domain AL541_RS23685 SM00862 Transcriptional regulatory protein, C terminal AL541_RS23690 SM00387 Histidine kinase-like ATPases AL541_RS23690 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS23700 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL541_RS23700 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL541_RS23715 SM00267 diguanylate cyclase AL541_RS23720 SM00267 diguanylate cyclase AL541_RS23720 SM00448 cheY-homologous receiver domain AL541_RS23730 SM00382 ATPases associated with a variety of cellular activities AL541_RS23770 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS23810 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL541_RS23815 SM00450 Rhodanese Homology Domain AL541_RS23865 SM00421 helix_turn_helix, Lux Regulon AL541_RS23865 SM00448 cheY-homologous receiver domain AL541_RS23870 SM00387 Histidine kinase-like ATPases AL541_RS23990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL541_RS23990 SM00267 diguanylate cyclase AL541_RS24000 SM00267 diguanylate cyclase AL541_RS24025 SM00880 AL541_RS24025 AL541_RS24040 SM00642 Alpha-amylase domain AL541_RS24055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS24055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS24060 SM01005 Alanine racemase, C-terminal domain AL541_RS24100 SM00382 ATPases associated with a variety of cellular activities AL541_RS24170 SM00382 ATPases associated with a variety of cellular activities AL541_RS24170 SM01086 C-terminal, D2-small domain, of ClpB protein AL541_RS24215 SM00331 Sigma factor PP2C-like phosphatases AL541_RS24215 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AL541_RS24245 SM00240 Forkhead associated domain AL541_RS24250 SM00220 Serine/Threonine protein kinases, catalytic domain AL541_RS24270 SM00331 Sigma factor PP2C-like phosphatases AL541_RS24270 SM00448 cheY-homologous receiver domain AL541_RS24305 SM00382 ATPases associated with a variety of cellular activities AL541_RS24325 SM01012 AL541_RS24325 AL541_RS24345 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL541_RS24365 SM00028 Tetratricopeptide repeats AL541_RS24365 SM00267 diguanylate cyclase AL541_RS24385 SM00871 Bacterial transcription activator, effector binding domain AL541_RS24390 SM00388 His Kinase A (phosphoacceptor) domain AL541_RS24395 SM00448 cheY-homologous receiver domain AL541_RS24395 SM00862 Transcriptional regulatory protein, C terminal AL541_RS24505 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS24505 SM00895 AL541_RS24505 AL541_RS24510 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL541_RS24510 SM00895 AL541_RS24510 AL541_RS24515 SM00116 Domain in cystathionine beta-synthase and other proteins. AL541_RS24520 SM00479 AL541_RS24520 AL541_RS24545 SM00861 Transketolase, pyrimidine binding domain AL541_RS24555 SM00893 Electron transfer flavoprotein domain AL541_RS24600 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS24600 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL541_RS24605 SM00382 ATPases associated with a variety of cellular activities AL541_RS24690 SM00822 AL541_RS24690 AL541_RS24725 SM00422 helix_turn_helix, mercury resistance AL541_RS24755 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL541_RS24755 SM00091 PAS domain AL541_RS24755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS24780 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL541_RS24785 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL541_RS24830 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS24880 SM00487 DEAD-like helicases superfamily AL541_RS24880 SM00490 helicase superfamily c-terminal domain AL541_RS24885 SM00316 Ribosomal protein S1-like RNA-binding domain AL541_RS24885 SM00357 Cold shock protein domain AL541_RS24885 SM00955 AL541_RS24885 AL541_RS24890 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS24915 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS24920 SM00382 ATPases associated with a variety of cellular activities AL541_RS24925 SM00052 Putative diguanylate phosphodiesterase AL541_RS24945 SM00487 DEAD-like helicases superfamily AL541_RS24945 SM00490 helicase superfamily c-terminal domain AL541_RS24950 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL541_RS24970 SM00357 Cold shock protein domain AL541_RS24995 SM00487 DEAD-like helicases superfamily AL541_RS24995 SM00490 helicase superfamily c-terminal domain AL541_RS25100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS25100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS25125 SM00448 cheY-homologous receiver domain AL541_RS25135 SM00382 ATPases associated with a variety of cellular activities AL541_RS25140 SM00382 ATPases associated with a variety of cellular activities AL541_RS25155 SM00062 Bacterial periplasmic substrate-binding proteins AL541_RS25155 SM00267 diguanylate cyclase AL541_RS25165 SM00357 Cold shock protein domain AL541_RS25170 SM01322 AL541_RS25170 AL541_RS25260 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS25320 SM00052 Putative diguanylate phosphodiesterase AL541_RS25320 SM00267 diguanylate cyclase AL541_RS25355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL541_RS25355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL541_RS25375 SM00530 Helix-turn-helix XRE-family like proteins AL541_RS25425 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL541_RS25435 SM00342 helix_turn_helix, arabinose operon control protein AL541_RS25455 SM00382 ATPases associated with a variety of cellular activities AL541_RS25470 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL541_RS25505 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL541_RS25505 SM00267 diguanylate cyclase