locus-tag	class	description
Vc3S01_RS00005	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
Vc3S01_RS00065	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
Vc3S01_RS00095	COG4974	Belongs to the 'phage' integrase family
Vc3S01_RS00125	COG1126	abc transporter atp-binding protein
Vc3S01_RS00150	COG0592	DNA-directed DNA polymerase activity
Vc3S01_RS00160	COG0187	DNA topoisomerase II activity
Vc3S01_RS00165	COG0071	Belongs to the small heat shock protein (HSP20) family
Vc3S01_RS00170	COG3977	Valine--pyruvate aminotransferase
Vc3S01_RS00185	COG2119	membrane
Vc3S01_RS00195	COG0425	Belongs to the sulfur carrier protein TusA family
Vc3S01_RS00210	COG0604	alcohol dehydrogenase
Vc3S01_RS00215	COG0183	Belongs to the thiolase family
Vc3S01_RS00225	COG1739	Uncharacterized protein family UPF0029
Vc3S01_RS00230	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Vc3S01_RS00285	COG2132	Multicopper oxidase
Vc3S01_RS00305	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
Vc3S01_RS00310	COG2104	thiamine diphosphate biosynthetic process
Vc3S01_RS00325	COG0006	proline dipeptidase activity
Vc3S01_RS00325	COG0006	proline dipeptidase activity
Vc3S01_RS00335	COG2814	Major facilitator Superfamily
Vc3S01_RS00355	COG3220	belongs to the UPF0276 family
Vc3S01_RS00365	COG0210	DNA helicase
Vc3S01_RS00370	COG0405	Gamma-glutamyltransferase
Vc3S01_RS00375	COG1280	lysine exporter protein (LysE YggA)
Vc3S01_RS00395	COG2962	Rard protein
Vc3S01_RS00400	COG0514	ATP-dependent DNA helicase (RecQ)
Vc3S01_RS00410	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
Vc3S01_RS00425	COG3118	belongs to the thioredoxin family
Vc3S01_RS00440	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
Vc3S01_RS00445	COG0633	Ferredoxin
Vc3S01_RS00485	COG3071	HemY protein
Vc3S01_RS00490	COG2959	enzyme of heme biosynthesis
Vc3S01_RS00495	COG1587	Uroporphyrinogen-III synthase
Vc3S01_RS00505	COG3072	Adenylate cyclase
Vc3S01_RS00520	COG0019	diaminopimelate decarboxylase activity
Vc3S01_RS00540	COG1011	Hydrolase
Vc3S01_RS00545	COG2199	diguanylate cyclase activity
Vc3S01_RS00545	COG3287	FIST C domain
Vc3S01_RS00545	COG2200	EAL domain
Vc3S01_RS00550	COG3148	PFAM DTW domain containing protein
Vc3S01_RS00565	COG0561	phosphatase activity
Vc3S01_RS00570	COG2267	carboxylic ester hydrolase activity
Vc3S01_RS00575	COG1280	lysine exporter protein (LysE YggA)
Vc3S01_RS00580	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
Vc3S01_RS00585	COG0640	Transcriptional regulator
Vc3S01_RS00590	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
Vc3S01_RS00645	COG2095	MarC family integral membrane protein
Vc3S01_RS00655	COG0742	ribosomal rna small subunit methyltransferase
Vc3S01_RS00660	COG0552	protein localization to endoplasmic reticulum
Vc3S01_RS00665	COG2884	Cell division ATP-binding protein ftsE
Vc3S01_RS00670	COG2177	Part of the ABC transporter FtsEX involved in
Vc3S01_RS00690	COG0705	Rhomboid family
Vc3S01_RS00695	COG1580	Controls the rotational direction of flagella during chemotaxis
Vc3S01_RS00700	COG3161	chorismate lyase activity
Vc3S01_RS00710	COG2937	Belongs to the GPAT DAPAT family
Vc3S01_RS00730	COG0534	Mate efflux family protein
Vc3S01_RS00735	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Vc3S01_RS00835	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Vc3S01_RS00845	COG0812	UDP-N-acetylmuramate dehydrogenase activity
Vc3S01_RS00895	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Vc3S01_RS00900	COG0250	Participates in transcription elongation, termination and antitermination
Vc3S01_RS00915	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
Vc3S01_RS00940	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
Vc3S01_RS00945	COG2816	NAD+ diphosphatase activity
Vc3S01_RS00965	COG1573	uracil-dna glycosylase
Vc3S01_RS00975	COG3068	Protein conserved in bacteria
Vc3S01_RS00980	COG1253	flavin adenine dinucleotide binding
Vc3S01_RS00995	COG0151	Belongs to the GarS family
Vc3S01_RS01010	COG0789	Transcriptional regulator
Vc3S01_RS01015	COG3710	Transcriptional regulator
Vc3S01_RS01025	COG0531	amino acid
Vc3S01_RS01030	COG1982	Orn Lys Arg decarboxylase major
Vc3S01_RS01075	COG2199	diguanylate cyclase activity
Vc3S01_RS01080	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
Vc3S01_RS01085	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Vc3S01_RS01095	COG0439	Biotin carboxylase
Vc3S01_RS01100	COG0511	ligase activity, forming carbon-carbon bonds
Vc3S01_RS01105	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
Vc3S01_RS01110	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
Vc3S01_RS01125	COG2814	Major facilitator Superfamily
Vc3S01_RS01130	COG0784	Response regulator, receiver
Vc3S01_RS01130	COG2198	Histidine kinase
Vc3S01_RS01130	COG2205	protein histidine kinase activity
Vc3S01_RS01150	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Vc3S01_RS01160	COG2095	MarC family integral membrane protein
Vc3S01_RS01170	COG4232	protein-disulfide reductase activity
Vc3S01_RS01175	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
Vc3S01_RS01180	COG1027	Aspartate ammonia-lyase
Vc3S01_RS01185	COG3030	protein affecting phage T7 exclusion by the F plasmid
Vc3S01_RS01190	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
Vc3S01_RS01200	COG2205	protein histidine kinase activity
Vc3S01_RS01205	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS01225	COG0534	Mate efflux family protein
Vc3S01_RS01250	COG1509	lysine 2,3-aminomutase activity
Vc3S01_RS01280	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
Vc3S01_RS01285	COG1053	succinate dehydrogenase
Vc3S01_RS01310	COG4942	peptidase
Vc3S01_RS01315	COG1045	serine acetyltransferase
Vc3S01_RS01330	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
Vc3S01_RS01335	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
Vc3S01_RS01345	COG0840	transmembrane signaling receptor activity
Vc3S01_RS01350	COG0471	metal ion transport
Vc3S01_RS01360	COG1162	GTPase activity
Vc3S01_RS01435	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
Vc3S01_RS01440	COG0802	atpase or kinase
Vc3S01_RS01445	COG0860	N-Acetylmuramoyl-L-alanine amidase
Vc3S01_RS01450	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
Vc3S01_RS01465	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
Vc3S01_RS01470	COG0330	HflC and HflK could
Vc3S01_RS01475	COG0330	HflC and HflK could
Vc3S01_RS01480	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
Vc3S01_RS01485	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
Vc3S01_RS01495	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
Vc3S01_RS01500	COG1017	nitric oxide dioxygenase activity
Vc3S01_RS01500	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
Vc3S01_RS01510	COG0557	exoribonuclease II activity
Vc3S01_RS01515	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Vc3S01_RS01520	COG0546	phosphoglycolate phosphatase activity
Vc3S01_RS01540	COG0512	Glutamine amidotransferase of anthranilate synthase
Vc3S01_RS01565	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Vc3S01_RS01570	COG3954	Phosphoribulokinase
Vc3S01_RS01580	COG0429	hydrolase of the alpha beta-hydrolase fold
Vc3S01_RS01590	COG0488	(ABC) transporter
Vc3S01_RS01595	COG2249	NAD(P)H dehydrogenase (quinone) activity
Vc3S01_RS01610	COG1047	Peptidyl-prolyl cis-trans
Vc3S01_RS01620	COG1446	asparaginase
Vc3S01_RS01635	COG0545	Peptidyl-prolyl cis-trans isomerase
Vc3S01_RS01640	COG2964	Protein conserved in bacteria
Vc3S01_RS01645	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
Vc3S01_RS01650	COG2923	Belongs to the DsrF TusC family
Vc3S01_RS01655	COG2168	tRNA wobble position uridine thiolation
Vc3S01_RS01670	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Vc3S01_RS01680	COG2906	2 iron, 2 sulfur cluster binding
Vc3S01_RS01690	COG0281	malic enzyme
Vc3S01_RS01700	COG0626	cystathionine gamma-synthase activity
Vc3S01_RS01705	COG0527	aspartate kinase activity
Vc3S01_RS01705	COG0460	homoserine dehydrogenase
Vc3S01_RS01710	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
Vc3S01_RS01720	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
Vc3S01_RS01730	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
Vc3S01_RS01745	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
Vc3S01_RS01745	COG0165	Argininosuccinate lyase
Vc3S01_RS01760	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Vc3S01_RS01765	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
Vc3S01_RS01765	COG0678	peroxiredoxin activity
Vc3S01_RS01775	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
Vc3S01_RS01820	COG0338	D12 class N6 adenine-specific DNA methyltransferase
Vc3S01_RS01825	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
Vc3S01_RS01835	COG2965	DNA replication, synthesis of RNA primer
Vc3S01_RS01855	COG0305	Participates in initiation and elongation during chromosome replication
Vc3S01_RS01860	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
Vc3S01_RS01870	COG0432	Pfam Uncharacterised protein family UPF0047
Vc3S01_RS01885	COG0735	belongs to the Fur family
Vc3S01_RS01995	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
Vc3S01_RS02015	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Vc3S01_RS02035	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
Vc3S01_RS02110	COG0646	methionine synthase
Vc3S01_RS02110	COG1410	methionine synthase
Vc3S01_RS02115	COG0527	aspartate kinase activity
Vc3S01_RS02125	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
Vc3S01_RS02135	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
Vc3S01_RS02150	COG0629	single-stranded DNA binding
Vc3S01_RS02155	COG2200	EAL domain
Vc3S01_RS02155	COG2199	diguanylate cyclase activity
Vc3S01_RS02180	COG3267	Type II secretory pathway component ExeA
Vc3S01_RS02180	COG3409	Peptidoglycan-binding domain 1 protein
Vc3S01_RS02190	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Vc3S01_RS02195	COG1459	type II secretion system
Vc3S01_RS02205	COG2165	general secretion pathway protein
Vc3S01_RS02220	COG2165	general secretion pathway protein
Vc3S01_RS02240	COG1077	Cell shape determining protein MreB Mrl
Vc3S01_RS02245	COG1792	Involved in formation and maintenance of cell shape
Vc3S01_RS02250	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
Vc3S01_RS02255	COG0424	maF-like protein
Vc3S01_RS02265	COG3164	Protein of unknown function
Vc3S01_RS02270	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Vc3S01_RS02275	COG0312	modulator of DNA gyrase
Vc3S01_RS02280	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
Vc3S01_RS02295	COG0564	pseudouridine synthase activity
Vc3S01_RS02300	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Vc3S01_RS02310	COG0312	modulator of DNA gyrase
Vc3S01_RS02315	COG2239	Acts as a magnesium transporter
Vc3S01_RS02320	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
Vc3S01_RS02330	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Vc3S01_RS02335	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
Vc3S01_RS02345	COG1137	ATPase activity
Vc3S01_RS02350	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
Vc3S01_RS02360	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
Vc3S01_RS02360	COG0517	IMP dehydrogenase activity
Vc3S01_RS02370	COG1127	ABC transporter
Vc3S01_RS02375	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
Vc3S01_RS02380	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
Vc3S01_RS02385	COG2854	intermembrane phospholipid transfer
Vc3S01_RS02395	COG5007	Belongs to the BolA IbaG family
Vc3S01_RS02405	COG0204	Acyl-transferase
Vc3S01_RS02410	COG0251	oxidation-reduction process
Vc3S01_RS02450	COG0456	acetyltransferase
Vc3S01_RS02460	COG0525	valine-tRNA ligase activity
Vc3S01_RS02465	COG2927	DNA polymerase III (CHI subunit)
Vc3S01_RS02475	COG0795	lipopolysaccharide-transporting ATPase activity
Vc3S01_RS02480	COG0795	lipopolysaccharide-transporting ATPase activity
Vc3S01_RS02490	COG1028	Short-chain dehydrogenase reductase Sdr
Vc3S01_RS02500	COG0726	polysaccharide deacetylase
Vc3S01_RS02505	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
Vc3S01_RS02515	COG1447	Phosphotransferase system cellobiose-specific component IIA
Vc3S01_RS02520	COG1486	melibiose metabolic process
Vc3S01_RS02530	COG1609	Transcriptional regulator
Vc3S01_RS02580	COG1012	belongs to the aldehyde dehydrogenase family
Vc3S01_RS02680	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Vc3S01_RS02685	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
Vc3S01_RS02700	COG0762	integral membrane protein
Vc3S01_RS02705	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
Vc3S01_RS02710	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
Vc3S01_RS02725	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
Vc3S01_RS02730	COG1678	Uncharacterized ACR, COG1678
Vc3S01_RS02735	COG0189	ligase activity
Vc3S01_RS02740	COG1385	rRNA (uridine-N3-)-methyltransferase activity
Vc3S01_RS02745	COG2356	endonuclease I
Vc3S01_RS02765	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
Vc3S01_RS02785	COG0191	fructose-bisphosphate aldolase activity
Vc3S01_RS02790	COG0668	transmembrane transport
Vc3S01_RS02805	COG0583	DNA-binding transcription factor activity
Vc3S01_RS02815	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Vc3S01_RS02825	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
Vc3S01_RS02835	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
Vc3S01_RS02845	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Vc3S01_RS02850	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Vc3S01_RS02870	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
Vc3S01_RS02880	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
Vc3S01_RS02885	COG1595	DNA-templated transcription, initiation
Vc3S01_RS02900	COG3086	response to oxidative stress
Vc3S01_RS02920	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
Vc3S01_RS02925	COG1381	Involved in DNA repair and RecF pathway recombination
Vc3S01_RS02930	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
Vc3S01_RS02955	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Vc3S01_RS02960	COG3956	TIGRFAM MazG family protein
Vc3S01_RS02970	COG0148	phosphopyruvate hydratase activity
Vc3S01_RS02980	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Vc3S01_RS03010	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Vc3S01_RS03020	COG1546	Belongs to the CinA family
Vc3S01_RS03025	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
Vc3S01_RS03040	COG0527	aspartate kinase activity
Vc3S01_RS03100	COG3630	sodium ion export across plasma membrane
Vc3S01_RS03105	COG5016	pyruvate
Vc3S01_RS03105	COG0511	ligase activity, forming carbon-carbon bonds
Vc3S01_RS03110	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
Vc3S01_RS03120	COG1238	metal cluster binding
Vc3S01_RS03125	COG0612	Peptidase, M16
Vc3S01_RS03145	COG4536	flavin adenine dinucleotide binding
Vc3S01_RS03150	COG4137	Cytochrome C assembly protein
Vc3S01_RS03155	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
Vc3S01_RS03185	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
Vc3S01_RS03190	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
Vc3S01_RS03195	COG0237	dephospho-CoA kinase activity
Vc3S01_RS03205	COG1459	type II secretion system
Vc3S01_RS03210	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Vc3S01_RS03235	COG2186	Transcriptional regulator
Vc3S01_RS03240	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
Vc3S01_RS03245	COG0508	dehydrogenase complex catalyzes the overall conversion of
Vc3S01_RS03250	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Vc3S01_RS03270	COG0288	reversible hydration of carbon dioxide
Vc3S01_RS03275	COG0659	secondary active sulfate transmembrane transporter activity
Vc3S01_RS03280	COG1131	(ABC) transporter
Vc3S01_RS03285	COG0842	Transport permease protein
Vc3S01_RS03290	COG1560	Kdo2-lipid A biosynthetic process
Vc3S01_RS03305	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Vc3S01_RS03315	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
Vc3S01_RS03330	COG1643	Atp-dependent helicase
Vc3S01_RS03335	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
Vc3S01_RS03340	COG1752	Esterase of the alpha-beta hydrolase superfamily
Vc3S01_RS03345	COG1049	propionate catabolic process, 2-methylcitrate cycle
Vc3S01_RS03360	COG0004	ammonium transporteR
Vc3S01_RS03365	COG1840	ABC-type Fe3 transport system, periplasmic component
Vc3S01_RS03375	COG3842	ATPase activity
Vc3S01_RS03380	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Vc3S01_RS03395	COG2971	BadF BadG BcrA BcrD
Vc3S01_RS03405	COG4608	Belongs to the ABC transporter superfamily
Vc3S01_RS03410	COG0444	Belongs to the ABC transporter superfamily
Vc3S01_RS03415	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Vc3S01_RS03425	COG0747	negative chemotaxis
Vc3S01_RS03430	COG2205	protein histidine kinase activity
Vc3S01_RS03430	COG0784	Response regulator, receiver
Vc3S01_RS03430	COG2198	Histidine kinase
Vc3S01_RS03430	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Vc3S01_RS03445	COG0628	permease
Vc3S01_RS03470	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Vc3S01_RS03475	COG0739	heme binding
Vc3S01_RS03480	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
Vc3S01_RS03490	COG2027	D-alanyl-D-alanine carboxypeptidase
Vc3S01_RS03495	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
Vc3S01_RS03500	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Vc3S01_RS03505	COG1534	Rna-binding protein
Vc3S01_RS03515	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
Vc3S01_RS03520	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
Vc3S01_RS03535	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Vc3S01_RS03555	COG0195	Participates in both transcription termination and antitermination
Vc3S01_RS03575	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
Vc3S01_RS03595	COG0534	Mate efflux family protein
Vc3S01_RS03600	COG0826	peptidase U32
Vc3S01_RS03605	COG0826	peptidase U32
Vc3S01_RS03615	COG3154	lipid carrier protein
Vc3S01_RS03620	COG3153	acetyltransferase
Vc3S01_RS03640	COG3706	GGDEF domain
Vc3S01_RS03650	COG0084	hydrolase, TatD family'
Vc3S01_RS03655	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
Vc3S01_RS03665	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
Vc3S01_RS03675	COG0813	purine-nucleoside phosphorylase activity
Vc3S01_RS03685	COG0560	Phosphoserine phosphatase
Vc3S01_RS03695	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
Vc3S01_RS03700	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Vc3S01_RS03705	COG0583	DNA-binding transcription factor activity
Vc3S01_RS03740	COG1022	Amp-dependent synthetase and ligase
Vc3S01_RS03770	COG4964	Belongs to the GSP D family
Vc3S01_RS03830	COG0583	DNA-binding transcription factor activity
Vc3S01_RS03835	COG3408	Glycogen debranching enzyme
Vc3S01_RS03835	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
Vc3S01_RS03845	COG0531	amino acid
Vc3S01_RS03850	COG2731	YhcH YjgK YiaL family protein
Vc3S01_RS03855	COG3250	beta-galactosidase activity
Vc3S01_RS03860	COG1609	Transcriptional regulator
Vc3S01_RS03865	COG0768	penicillin binding
Vc3S01_RS03870	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Vc3S01_RS03875	COG1085	galactose-1-phosphate uridylyltransferase
Vc3S01_RS03885	COG2017	converts alpha-aldose to the beta-anomer
Vc3S01_RS03895	COG1609	Transcriptional regulator
Vc3S01_RS03900	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Vc3S01_RS03900	COG1263	PTS System
Vc3S01_RS03910	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Vc3S01_RS03935	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
Vc3S01_RS03940	COG1349	DNA-binding transcription factor activity
Vc3S01_RS03950	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Vc3S01_RS03960	COG2271	Major facilitator Superfamily
Vc3S01_RS03965	COG0584	glycerophosphoryl diester phosphodiesterase
Vc3S01_RS03980	COG2171	N-acyltransferase activity
Vc3S01_RS03995	COG3141	response to X-ray
Vc3S01_RS04015	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
Vc3S01_RS04020	COG1074	ATP-dependent DNA helicase activity
Vc3S01_RS04025	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
Vc3S01_RS04045	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
Vc3S01_RS04045	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
Vc3S01_RS04060	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
Vc3S01_RS04065	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
Vc3S01_RS04070	COG2166	iron-sulfur cluster assembly
Vc3S01_RS04075	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
Vc3S01_RS04080	COG0693	protein deglycase activity
Vc3S01_RS04085	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
Vc3S01_RS04110	COG1595	DNA-templated transcription, initiation
Vc3S01_RS04140	COG0271	Belongs to the BolA IbaG family
Vc3S01_RS04175	COG1477	protein flavinylation
Vc3S01_RS04190	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
Vc3S01_RS04195	COG0514	ATP-dependent DNA helicase (RecQ)
Vc3S01_RS04200	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Vc3S01_RS04215	COG0733	neurotransmitter:sodium symporter activity
Vc3S01_RS04240	COG1720	tRNA m6t6A37 methyltransferase activity
Vc3S01_RS04255	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
Vc3S01_RS04290	COG3098	single-species biofilm formation
Vc3S01_RS04295	COG0564	pseudouridine synthase activity
Vc3S01_RS04310	COG0024	Methionine aminopeptidase
Vc3S01_RS04335	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
Vc3S01_RS04340	COG0575	Belongs to the CDS family
Vc3S01_RS04350	COG0750	zinc metalloprotease
Vc3S01_RS04360	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
Vc3S01_RS04365	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Vc3S01_RS04390	COG0587	DNA-directed DNA polymerase activity
Vc3S01_RS04410	COG0347	Belongs to the P(II) protein family
Vc3S01_RS04425	COG0741	lytic transglycosylase activity
Vc3S01_RS04425	COG1388	LysM domain
Vc3S01_RS04435	COG2226	methyltransferase
Vc3S01_RS04445	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
Vc3S01_RS04470	COG1960	acyl-CoA dehydrogenase activity
Vc3S01_RS04475	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
Vc3S01_RS04480	COG0121	glutamine amidotransferase
Vc3S01_RS04485	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
Vc3S01_RS04490	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
Vc3S01_RS04495	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
Vc3S01_RS04500	COG2233	PERMEase
Vc3S01_RS04520	COG4783	chaperone-mediated protein folding
Vc3S01_RS04535	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
Vc3S01_RS04540	COG2716	regulation of RNA biosynthetic process
Vc3S01_RS04545	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Vc3S01_RS04550	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
Vc3S01_RS04570	COG1393	Belongs to the ArsC family
Vc3S01_RS04600	COG2837	iron assimilation
Vc3S01_RS04605	COG2169	Transcriptional regulator
Vc3S01_RS04610	COG1486	melibiose metabolic process
Vc3S01_RS04615	COG2211	Major facilitator Superfamily
Vc3S01_RS04625	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Vc3S01_RS04635	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Vc3S01_RS04640	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Vc3S01_RS04645	COG1334	flagellar protein FlaG
Vc3S01_RS04650	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
Vc3S01_RS04660	COG1516	flagellar protein fliS
Vc3S01_RS04680	COG1677	Flagellar hook-basal body complex protein FliE
Vc3S01_RS04690	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Vc3S01_RS04745	COG1987	bacterial-type flagellum assembly
Vc3S01_RS04750	COG1684	flagellar biosynthetic protein fliR
Vc3S01_RS04785	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
Vc3S01_RS04790	COG0643	Histidine kinase
Vc3S01_RS04790	COG0784	Response regulator, receiver
Vc3S01_RS04790	COG2198	Histidine kinase
Vc3S01_RS04795	COG2201	protein-glutamate methylesterase activity
Vc3S01_RS04800	COG1192	Involved in chromosome partitioning
Vc3S01_RS04810	COG0835	chemotaxis
Vc3S01_RS04820	COG4133	protoheme IX ABC transporter activity
Vc3S01_RS04825	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
Vc3S01_RS04830	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
Vc3S01_RS04845	COG1138	Cytochrome C-type biogenesis protein
Vc3S01_RS04850	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
Vc3S01_RS04860	COG4235	cytochrome complex assembly
Vc3S01_RS04860	COG3088	subunit of a heme lyase
Vc3S01_RS04865	COG2853	Lipoprotein
Vc3S01_RS04875	COG2067	long-chain fatty acid transport protein
Vc3S01_RS04895	COG0183	Belongs to the thiolase family
Vc3S01_RS04915	COG2062	phosphohistidine phosphatase, SixA
Vc3S01_RS04925	COG2890	protein-(glutamine-N5) methyltransferase activity
Vc3S01_RS04935	COG2860	membrane
Vc3S01_RS04940	COG3101	peptidyl-lysine hydroxylation
Vc3S01_RS04965	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Vc3S01_RS04975	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Vc3S01_RS04980	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
Vc3S01_RS05005	COG0285	dihydrofolate synthase activity
Vc3S01_RS05010	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
Vc3S01_RS05015	COG1286	toxin biosynthetic process
Vc3S01_RS05020	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
Vc3S01_RS05025	COG0583	DNA-binding transcription factor activity
Vc3S01_RS05030	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS05040	COG2832	Protein of unknown function (DUF454)
Vc3S01_RS05050	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
Vc3S01_RS05060	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
Vc3S01_RS05065	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Vc3S01_RS05070	COG0814	amino acid
Vc3S01_RS05075	COG0251	oxidation-reduction process
Vc3S01_RS05085	COG2964	Protein conserved in bacteria
Vc3S01_RS05095	COG2983	Belongs to the UPF0260 family
Vc3S01_RS05100	COG2261	transglycosylase associated protein
Vc3S01_RS05105	COG2985	domain, Protein
Vc3S01_RS05110	COG0076	glutamate decarboxylase activity
Vc3S01_RS05115	COG0668	transmembrane transport
Vc3S01_RS05125	COG0346	lactoylglutathione lyase activity
Vc3S01_RS05135	COG1785	Belongs to the alkaline phosphatase family
Vc3S01_RS05155	COG2226	methyltransferase
Vc3S01_RS05175	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
Vc3S01_RS05180	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Vc3S01_RS05190	COG3139	Protein of unknown function (DUF1315)
Vc3S01_RS05195	COG0252	asparaginase activity
Vc3S01_RS05200	COG0616	signal peptide processing
Vc3S01_RS05205	COG0446	pyridine nucleotide-disulphide oxidoreductase
Vc3S01_RS05205	COG1902	pentaerythritol trinitrate reductase activity
Vc3S01_RS05210	COG0778	Nitroreductase
Vc3S01_RS05215	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Vc3S01_RS05230	COG0123	including yeast histone deacetylase and acetoin utilization protein
Vc3S01_RS05240	COG4269	membrane
Vc3S01_RS05255	COG3083	sulfuric ester hydrolase activity
Vc3S01_RS05280	COG1757	Na H antiporter
Vc3S01_RS05285	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
Vc3S01_RS05290	COG2165	general secretion pathway protein
Vc3S01_RS05295	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Vc3S01_RS05300	COG2095	MarC family integral membrane protein
Vc3S01_RS05305	COG1454	alcohol dehydrogenase
Vc3S01_RS05305	COG1012	belongs to the aldehyde dehydrogenase family
Vc3S01_RS05310	COG1028	Short-chain dehydrogenase reductase Sdr
Vc3S01_RS05325	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
Vc3S01_RS05330	COG4974	Belongs to the 'phage' integrase family
Vc3S01_RS05350	COG1403	HNH endonuclease
Vc3S01_RS05510	COG3504	Conjugal transfer protein
Vc3S01_RS05515	COG3736	Type IV secretory pathway, component VirB8
Vc3S01_RS05535	COG3451	type IV secretory pathway VirB4
Vc3S01_RS05570	COG2056	Na+-H+ antiporter family
Vc3S01_RS05580	COG2885	chlorophyll binding
Vc3S01_RS05590	COG0346	lactoylglutathione lyase activity
Vc3S01_RS05595	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Vc3S01_RS05600	COG4660	Part of a membrane complex involved in electron transport
Vc3S01_RS05605	COG4659	FMN binding
Vc3S01_RS05610	COG4658	electron transport chain
Vc3S01_RS05615	COG4656	Part of a membrane complex involved in electron transport
Vc3S01_RS05625	COG4657	Part of a membrane complex involved in electron transport
Vc3S01_RS05630	COG1882	Formate acetyltransferase
Vc3S01_RS05635	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS05675	COG0556	nucleotide-excision repair
Vc3S01_RS05690	COG0391	Required for morphogenesis under gluconeogenic growth conditions
Vc3S01_RS05695	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
Vc3S01_RS05700	COG0521	Mo-molybdopterin cofactor biosynthetic process
Vc3S01_RS05710	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
Vc3S01_RS05715	COG0314	molybdopterin synthase activity
Vc3S01_RS05725	COG0601	transmembrane transport
Vc3S01_RS05730	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Vc3S01_RS05735	COG0444	Belongs to the ABC transporter superfamily
Vc3S01_RS05745	COG0435	Glutathione S-transferase
Vc3S01_RS05750	COG3174	membrane
Vc3S01_RS05755	COG0280	phosphate acetyltransferase
Vc3S01_RS05755	COG0857	belongs to the CobB CobQ family
Vc3S01_RS05780	COG4120	Belongs to the binding-protein-dependent transport system permease family
Vc3S01_RS05785	COG1122	ATPase activity
Vc3S01_RS05790	COG0366	Alpha amylase catalytic
Vc3S01_RS05800	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Vc3S01_RS05805	COG0653	protein targeting
Vc3S01_RS05810	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
Vc3S01_RS05820	COG2186	Transcriptional regulator
Vc3S01_RS05850	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
Vc3S01_RS05855	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Vc3S01_RS05860	COG0659	secondary active sulfate transmembrane transporter activity
Vc3S01_RS05870	COG1530	ribonuclease E activity
Vc3S01_RS05875	COG0564	pseudouridine synthase activity
Vc3S01_RS05880	COG0424	maF-like protein
Vc3S01_RS05885	COG1399	metal-binding, possibly nucleic acid-binding protein
Vc3S01_RS05900	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Vc3S01_RS05930	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
Vc3S01_RS05945	COG0084	hydrolase, TatD family'
Vc3S01_RS05950	COG1263	PTS System
Vc3S01_RS05950	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Vc3S01_RS05965	COG0733	neurotransmitter:sodium symporter activity
Vc3S01_RS05980	COG4667	esterase of the alpha-beta hydrolase superfamily
Vc3S01_RS06005	COG2272	Belongs to the type-B carboxylesterase lipase family
Vc3S01_RS06015	COG3710	Transcriptional regulator
Vc3S01_RS06030	COG1940	carbohydrate kinase activity
Vc3S01_RS06035	COG0835	chemotaxis
Vc3S01_RS06035	COG0784	Response regulator, receiver
Vc3S01_RS06055	COG1028	Short-chain dehydrogenase reductase Sdr
Vc3S01_RS06060	COG0616	signal peptide processing
Vc3S01_RS06070	COG0539	negative regulation of cytoplasmic translation
Vc3S01_RS06080	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
Vc3S01_RS06085	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
Vc3S01_RS06095	COG4166	transmembrane transport
Vc3S01_RS06115	COG3009	Protein conserved in bacteria
Vc3S01_RS06120	COG3008	intermembrane lipid transfer
Vc3S01_RS06120	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
Vc3S01_RS06125	COG2995	paraquat-inducible protein a
Vc3S01_RS06140	COG4232	protein-disulfide reductase activity
Vc3S01_RS06145	COG3118	belongs to the thioredoxin family
Vc3S01_RS06155	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Vc3S01_RS06185	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Vc3S01_RS06195	COG0577	efflux transmembrane transporter activity
Vc3S01_RS06200	COG0577	efflux transmembrane transporter activity
Vc3S01_RS06200	COG1136	(ABC) transporter
Vc3S01_RS06205	COG0577	efflux transmembrane transporter activity
Vc3S01_RS06205	COG1136	(ABC) transporter
Vc3S01_RS06220	COG2176	DNA-directed DNA polymerase activity
Vc3S01_RS06280	COG0515	serine threonine protein kinase
Vc3S01_RS06285	COG5002	protein histidine kinase activity
Vc3S01_RS06285	COG3850	Histidine kinase
Vc3S01_RS06290	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS06295	COG0463	Glycosyl transferase, family 2
Vc3S01_RS06300	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Vc3S01_RS06310	COG0840	transmembrane signaling receptor activity
Vc3S01_RS06315	COG2175	clavaminate synthase activity
Vc3S01_RS06320	COG2964	Protein conserved in bacteria
Vc3S01_RS06335	COG0446	pyridine nucleotide-disulphide oxidoreductase
Vc3S01_RS06355	COG1032	radical SAM domain protein
Vc3S01_RS06360	COG1716	ATPase activity
Vc3S01_RS06360	COG5001	Diguanylate cyclase
Vc3S01_RS06390	COG2350	Protein conserved in bacteria
Vc3S01_RS06420	COG1301	dicarboxylic acid transport
Vc3S01_RS06425	COG0159	tryptophan synthase activity
Vc3S01_RS06435	COG0135	phosphoribosylanthranilate isomerase activity
Vc3S01_RS06435	COG0134	indole-3-glycerol-phosphate synthase activity
Vc3S01_RS06445	COG0512	Glutamine amidotransferase of anthranilate synthase
Vc3S01_RS06450	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
Vc3S01_RS06460	COG0613	PHP domain protein
Vc3S01_RS06465	COG0009	L-threonylcarbamoyladenylate synthase
Vc3S01_RS06475	COG1187	pseudouridine synthase activity
Vc3S01_RS06495	COG0417	DNA replication proofreading
Vc3S01_RS06500	COG2197	response regulator
Vc3S01_RS06505	COG0322	excinuclease ABC activity
Vc3S01_RS06545	COG0019	diaminopimelate decarboxylase activity
Vc3S01_RS06560	COG1546	Belongs to the CinA family
Vc3S01_RS06560	COG1058	Belongs to the CinA family
Vc3S01_RS06570	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Vc3S01_RS06575	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
Vc3S01_RS06600	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
Vc3S01_RS06610	COG0437	4 iron, 4 sulfur cluster binding
Vc3S01_RS06615	COG3301	Polysulphide reductase, NrfD
Vc3S01_RS06620	COG1138	Cytochrome C-type biogenesis protein
Vc3S01_RS06630	COG3088	subunit of a heme lyase
Vc3S01_RS06630	COG4235	cytochrome complex assembly
Vc3S01_RS06665	COG2989	Protein conserved in bacteria
Vc3S01_RS06670	COG3108	Peptidase M15
Vc3S01_RS06675	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Vc3S01_RS06690	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
Vc3S01_RS06715	COG1846	Transcriptional regulator
Vc3S01_RS06720	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
Vc3S01_RS06725	COG0840	transmembrane signaling receptor activity
Vc3S01_RS06745	COG1448	Aminotransferase
Vc3S01_RS06750	COG2770	Histidine kinase
Vc3S01_RS06750	COG3437	response regulator, receiver
Vc3S01_RS06765	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Vc3S01_RS06780	COG0017	Asparaginyl-tRNA synthetase
Vc3S01_RS06790	COG0720	synthase
Vc3S01_RS06795	COG2197	response regulator
Vc3S01_RS06810	COG1760	l-serine dehydratase
Vc3S01_RS06815	COG0814	amino acid
Vc3S01_RS06830	COG2205	protein histidine kinase activity
Vc3S01_RS06830	COG0784	Response regulator, receiver
Vc3S01_RS06835	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
Vc3S01_RS06850	COG3106	COG3106 Predicted ATPase
Vc3S01_RS06865	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Vc3S01_RS07005	COG0519	Catalyzes the synthesis of GMP from XMP
Vc3S01_RS07670	COG0494	nUDIX hydrolase
Vc3S01_RS07675	COG1714	RDD family
Vc3S01_RS07700	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Vc3S01_RS07890	COG4221	oxidoreductase activity
Vc3S01_RS07905	COG3340	Belongs to the peptidase S51 family
Vc3S01_RS07935	COG0456	acetyltransferase
Vc3S01_RS07940	COG0471	metal ion transport
Vc3S01_RS07945	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Vc3S01_RS07945	COG4191	Histidine kinase
Vc3S01_RS07970	COG1328	CTP reductase activity
Vc3S01_RS07975	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Vc3S01_RS07985	COG0861	Integral membrane protein TerC family
Vc3S01_RS07995	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Vc3S01_RS08000	COG4221	oxidoreductase activity
Vc3S01_RS08005	COG1454	alcohol dehydrogenase
Vc3S01_RS08010	COG0814	amino acid
Vc3S01_RS08030	COG1132	(ABC) transporter
Vc3S01_RS08035	COG1132	(ABC) transporter
Vc3S01_RS08040	COG2165	general secretion pathway protein
Vc3S01_RS08045	COG0583	DNA-binding transcription factor activity
Vc3S01_RS08070	COG0443	Heat shock 70 kDa protein
Vc3S01_RS08075	COG0443	Heat shock 70 kDa protein
Vc3S01_RS08085	COG3706	GGDEF domain
Vc3S01_RS08115	COG3227	Zinc metalloprotease (Elastase)
Vc3S01_RS08135	COG3842	ATPase activity
Vc3S01_RS08140	COG3459	Glycosyltransferase 36 associated
Vc3S01_RS08150	COG1653	transport
Vc3S01_RS08160	COG0395	ABC-type sugar transport system, permease component
Vc3S01_RS08175	COG0243	molybdopterin cofactor binding
Vc3S01_RS08180	COG0437	4 iron, 4 sulfur cluster binding
Vc3S01_RS08185	COG3302	dmso reductase anchor subunit
Vc3S01_RS08200	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
Vc3S01_RS08205	COG1643	Atp-dependent helicase
Vc3S01_RS08230	COG3063	Type IV pilus biogenesis stability protein PilW
Vc3S01_RS08260	COG0531	amino acid
Vc3S01_RS08265	COG1280	lysine exporter protein (LysE YggA)
Vc3S01_RS08270	COG1560	Kdo2-lipid A biosynthetic process
Vc3S01_RS08290	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
Vc3S01_RS08295	COG1280	lysine exporter protein (LysE YggA)
Vc3S01_RS08340	COG1115	amino acid carrier protein
Vc3S01_RS08365	COG1368	sulfuric ester hydrolase activity
Vc3S01_RS08380	COG0215	cysteine-tRNA ligase activity
Vc3S01_RS08385	COG0534	Mate efflux family protein
Vc3S01_RS08390	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
Vc3S01_RS08400	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
Vc3S01_RS08405	COG0456	acetyltransferase
Vc3S01_RS08410	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
Vc3S01_RS08415	COG0662	Cupin 2, conserved barrel domain protein
Vc3S01_RS08420	COG0527	aspartate kinase activity
Vc3S01_RS08430	COG1858	cytochrome C peroxidase
Vc3S01_RS08435	COG1404	Belongs to the peptidase S8 family
Vc3S01_RS08440	COG3227	Zinc metalloprotease (Elastase)
Vc3S01_RS08455	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
Vc3S01_RS08460	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Vc3S01_RS08465	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
Vc3S01_RS08490	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
Vc3S01_RS08495	COG0667	Aldo Keto reductase
Vc3S01_RS08510	COG0583	DNA-binding transcription factor activity
Vc3S01_RS08515	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Vc3S01_RS08520	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
Vc3S01_RS08525	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
Vc3S01_RS08530	COG0679	Auxin Efflux Carrier
Vc3S01_RS08570	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
Vc3S01_RS08605	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Vc3S01_RS08625	COG3290	protein histidine kinase activity
Vc3S01_RS08630	COG4565	transcriptional regulatory protein
Vc3S01_RS08635	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
Vc3S01_RS08640	COG0363	glucosamine-6-phosphate deaminase activity
Vc3S01_RS08645	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
Vc3S01_RS08675	COG3284	Transcriptional regulator
Vc3S01_RS08680	COG1012	belongs to the aldehyde dehydrogenase family
Vc3S01_RS08685	COG2358	TRAP transporter, solute receptor (TAXI family
Vc3S01_RS08690	COG0730	response to heat
Vc3S01_RS08720	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Vc3S01_RS08725	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Vc3S01_RS08835	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
Vc3S01_RS08840	COG0372	Belongs to the citrate synthase family
Vc3S01_RS08850	COG2828	Protein conserved in bacteria
Vc3S01_RS08865	COG3119	arylsulfatase activity
Vc3S01_RS08885	COG0561	phosphatase activity
Vc3S01_RS08890	COG0602	queuosine metabolic process
Vc3S01_RS08900	COG3706	GGDEF domain
Vc3S01_RS09010	COG0840	transmembrane signaling receptor activity
Vc3S01_RS09015	COG1254	Belongs to the acylphosphatase family
Vc3S01_RS09020	COG2920	part of a sulfur-relay system
Vc3S01_RS09030	COG0670	Belongs to the BI1 family
Vc3S01_RS09035	COG1126	abc transporter atp-binding protein
Vc3S01_RS09040	COG0765	amino acid transport
Vc3S01_RS09045	COG4597	amino acid ABC transporter
Vc3S01_RS09050	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Vc3S01_RS09065	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Vc3S01_RS09090	COG3008	intermembrane lipid transfer
Vc3S01_RS09095	COG2995	paraquat-inducible protein a
Vc3S01_RS09100	COG1132	(ABC) transporter
Vc3S01_RS09105	COG1956	GAF domain-containing protein
Vc3S01_RS09110	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
Vc3S01_RS09125	COG0308	aminopeptidase N
Vc3S01_RS09135	COG2902	Dehydrogenase
Vc3S01_RS09160	COG0488	(ABC) transporter
Vc3S01_RS09185	COG1067	ATP-dependent peptidase activity
Vc3S01_RS09215	COG2801	Transposase and inactivated derivatives
Vc3S01_RS09220	COG2205	protein histidine kinase activity
Vc3S01_RS09220	COG0784	Response regulator, receiver
Vc3S01_RS09235	COG3278	Belongs to the heme-copper respiratory oxidase family
Vc3S01_RS09250	COG2010	Cytochrome c
Vc3S01_RS09260	COG2217	Heavy metal translocating P-type atpase
Vc3S01_RS09275	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Vc3S01_RS09280	COG0589	response to stress
Vc3S01_RS09305	COG3842	ATPase activity
Vc3S01_RS09315	COG1177	transmembrane transport
Vc3S01_RS09325	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
Vc3S01_RS09330	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
Vc3S01_RS09350	COG0437	4 iron, 4 sulfur cluster binding
Vc3S01_RS09355	COG3383	formate dehydrogenase (NAD+) activity
Vc3S01_RS09355	COG0243	molybdopterin cofactor binding
Vc3S01_RS09365	COG3381	protein complex oligomerization
Vc3S01_RS09385	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
Vc3S01_RS09400	COG0488	(ABC) transporter
Vc3S01_RS09415	COG4191	Histidine kinase
Vc3S01_RS09420	COG2204	response regulator
Vc3S01_RS09430	COG4662	Binding-protein-dependent transport system inner membrane component
Vc3S01_RS09435	COG3842	ATPase activity
Vc3S01_RS09445	COG0303	'Molybdopterin
Vc3S01_RS09455	COG1940	carbohydrate kinase activity
Vc3S01_RS09460	COG3148	PFAM DTW domain containing protein
Vc3S01_RS09510	COG3290	protein histidine kinase activity
Vc3S01_RS09510	COG0840	transmembrane signaling receptor activity
Vc3S01_RS09515	COG0791	NLP P60 protein
Vc3S01_RS09525	COG3706	GGDEF domain
Vc3S01_RS09530	COG2201	protein-glutamate methylesterase activity
Vc3S01_RS09535	COG3001	Fructosamine kinase
Vc3S01_RS09545	COG0307	riboflavin synthase, alpha
Vc3S01_RS09550	COG0534	Mate efflux family protein
Vc3S01_RS09560	COG1793	dna ligase
Vc3S01_RS09570	COG2885	chlorophyll binding
Vc3S01_RS09590	COG2204	response regulator
Vc3S01_RS09595	COG0438	transferase activity, transferring glycosyl groups
Vc3S01_RS09600	COG0438	transferase activity, transferring glycosyl groups
Vc3S01_RS09630	COG0438	transferase activity, transferring glycosyl groups
Vc3S01_RS09635	COG1215	transferase activity, transferring glycosyl groups
Vc3S01_RS09640	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
Vc3S01_RS09650	COG3064	Membrane
Vc3S01_RS09675	COG3300	MHYT domain
Vc3S01_RS09675	COG5001	Diguanylate cyclase
Vc3S01_RS09680	COG4999	Histidine kinase
Vc3S01_RS09680	COG3850	Histidine kinase
Vc3S01_RS09680	COG3437	response regulator, receiver
Vc3S01_RS09680	COG2205	protein histidine kinase activity
Vc3S01_RS09700	COG0110	maltose O-acetyltransferase activity
Vc3S01_RS09725	COG1846	Transcriptional regulator
Vc3S01_RS09735	COG1482	cell wall glycoprotein biosynthetic process
Vc3S01_RS09750	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Vc3S01_RS09770	COG0383	alpha-mannosidase activity
Vc3S01_RS09780	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
Vc3S01_RS09805	COG3247	response to pH
Vc3S01_RS09810	COG0668	transmembrane transport
Vc3S01_RS09820	COG1404	Belongs to the peptidase S8 family
Vc3S01_RS09830	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
Vc3S01_RS09845	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS09895	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Vc3S01_RS09895	COG2199	diguanylate cyclase activity
Vc3S01_RS09930	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Vc3S01_RS09945	COG0786	glutamate:sodium symporter activity
Vc3S01_RS09970	COG0625	glutathione transferase activity
Vc3S01_RS09980	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
Vc3S01_RS09995	COG2195	Cleaves the N-terminal amino acid of tripeptides
Vc3S01_RS10025	COG0813	purine-nucleoside phosphorylase activity
Vc3S01_RS10050	COG1451	nucleotide metabolic process
Vc3S01_RS10060	COG5492	domain, Protein
Vc3S01_RS10060	COG4932	domain protein
Vc3S01_RS10075	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS10085	COG0784	Response regulator, receiver
Vc3S01_RS10085	COG2205	protein histidine kinase activity
Vc3S01_RS10145	COG2165	general secretion pathway protein
Vc3S01_RS10170	COG0583	DNA-binding transcription factor activity
Vc3S01_RS10200	COG4139	cobalamin transport
Vc3S01_RS10215	COG2062	phosphohistidine phosphatase, SixA
Vc3S01_RS10225	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
Vc3S01_RS10235	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
Vc3S01_RS10240	COG0702	epimerase
Vc3S01_RS10245	COG1823	symporter activity
Vc3S01_RS10255	COG2925	Exonuclease
Vc3S01_RS10265	COG1346	cytolysis
Vc3S01_RS10315	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Vc3S01_RS10320	COG4605	iron ion homeostasis
Vc3S01_RS10325	COG4607	ABC-type enterochelin transport system periplasmic component
Vc3S01_RS10330	COG4774	siderophore transport
Vc3S01_RS10350	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
Vc3S01_RS10365	COG1132	(ABC) transporter
Vc3S01_RS10370	COG3433	isochorismatase activity
Vc3S01_RS10370	COG1535	isochorismatase
Vc3S01_RS10375	COG0072	phenylalanine-tRNA ligase activity
Vc3S01_RS10375	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Vc3S01_RS10385	COG3706	GGDEF domain
Vc3S01_RS10425	COG0251	oxidation-reduction process
Vc3S01_RS10465	COG2188	Transcriptional regulator
Vc3S01_RS10475	COG0010	Belongs to the arginase family
Vc3S01_RS10485	COG2986	histidine ammonia-lyase
Vc3S01_RS10530	COG0247	lactate metabolic process
Vc3S01_RS10530	COG0277	FAD linked oxidase domain protein
Vc3S01_RS10590	COG1643	Atp-dependent helicase
Vc3S01_RS10600	COG2949	membrane
Vc3S01_RS10605	COG0471	metal ion transport
Vc3S01_RS10610	COG3706	GGDEF domain
Vc3S01_RS10630	COG0492	ferredoxin-NADP+ reductase activity
Vc3S01_RS10635	COG4988	ABC transporter
Vc3S01_RS10640	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
Vc3S01_RS10650	COG2610	gluconate transmembrane transporter activity
Vc3S01_RS10655	COG0583	DNA-binding transcription factor activity
Vc3S01_RS10660	COG2200	EAL domain
Vc3S01_RS10690	COG5001	Diguanylate cyclase
Vc3S01_RS10705	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
Vc3S01_RS10715	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Vc3S01_RS10715	COG4191	Histidine kinase
Vc3S01_RS10730	COG3070	regulator of competence-specific genes
Vc3S01_RS10745	COG2431	L-lysine efflux transmembrane transporter activity
Vc3S01_RS10755	COG0076	glutamate decarboxylase activity
Vc3S01_RS10760	COG1737	Transcriptional regulator
Vc3S01_RS10770	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
Vc3S01_RS10780	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
Vc3S01_RS10810	COG4181	ATPase activity
Vc3S01_RS10815	COG0534	Mate efflux family protein
Vc3S01_RS10820	COG0702	epimerase
Vc3S01_RS10825	COG4667	esterase of the alpha-beta hydrolase superfamily
Vc3S01_RS10835	COG2814	Major facilitator Superfamily
Vc3S01_RS10840	COG1187	pseudouridine synthase activity
Vc3S01_RS10845	COG1061	Type III restriction enzyme res subunit
Vc3S01_RS10865	COG2199	diguanylate cyclase activity
Vc3S01_RS10920	COG3313	Fe-S protein
Vc3S01_RS10930	COG0659	secondary active sulfate transmembrane transporter activity
Vc3S01_RS10955	COG0493	'glutamate synthase
Vc3S01_RS10965	COG0398	Pfam SNARE associated Golgi protein
Vc3S01_RS10970	COG4134	Bacterial extracellular solute-binding protein
Vc3S01_RS10975	COG4135	transport system, permease component
Vc3S01_RS10980	COG4136	ATPase activity
Vc3S01_RS10985	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Vc3S01_RS10995	COG2814	Major facilitator Superfamily
Vc3S01_RS11000	COG3604	Transcriptional regulator
Vc3S01_RS11005	COG1151	hydroxylamine reductase activity
Vc3S01_RS11010	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
Vc3S01_RS11020	COG0564	pseudouridine synthase activity
Vc3S01_RS11030	COG0733	neurotransmitter:sodium symporter activity
Vc3S01_RS11040	COG0626	cystathionine gamma-synthase activity
Vc3S01_RS11045	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
Vc3S01_RS11065	COG2818	Glycosylase
Vc3S01_RS11085	COG1983	PspC domain protein
Vc3S01_RS11095	COG1842	Phage shock protein A
Vc3S01_RS11100	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
Vc3S01_RS11110	COG4168	peptide transport system, permease
Vc3S01_RS11115	COG4171	peptide transport system, permease
Vc3S01_RS11125	COG4172	Belongs to the ABC transporter superfamily
Vc3S01_RS11135	COG1227	inorganic diphosphatase activity
Vc3S01_RS11150	COG0243	molybdopterin cofactor binding
Vc3S01_RS11155	COG3005	denitrification pathway
Vc3S01_RS11160	COG4459	periplasmic nitrate reductase
Vc3S01_RS11165	COG0390	transport system, permease component
Vc3S01_RS11175	COG2116	formate transmembrane transporter activity
Vc3S01_RS11200	COG1434	Gram-negative-bacterium-type cell wall biogenesis
Vc3S01_RS11205	COG1435	thymidine kinase activity
Vc3S01_RS11210	COG0215	cysteine-tRNA ligase activity
Vc3S01_RS11215	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Vc3S01_RS11220	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
Vc3S01_RS11225	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
Vc3S01_RS11230	COG3012	SEC-C Motif Domain Protein
Vc3S01_RS11235	COG0140	phosphoribosyl-ATP diphosphatase activity
Vc3S01_RS11235	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
Vc3S01_RS11245	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
Vc3S01_RS11250	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
Vc3S01_RS11255	COG0131	Imidazoleglycerol-phosphate dehydratase
Vc3S01_RS11255	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
Vc3S01_RS11265	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
Vc3S01_RS11280	COG1757	Na H antiporter
Vc3S01_RS11290	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Vc3S01_RS11310	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
Vc3S01_RS11330	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Vc3S01_RS11345	COG0300	oxidoreductase activity
Vc3S01_RS11370	COG2226	methyltransferase
Vc3S01_RS11390	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
Vc3S01_RS11410	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
Vc3S01_RS11420	COG1674	ftsk spoiiie
Vc3S01_RS11430	COG0686	Belongs to the AlaDH PNT family
Vc3S01_RS11440	COG0583	DNA-binding transcription factor activity
Vc3S01_RS11465	COG0402	S-adenosylhomocysteine deaminase activity
Vc3S01_RS11470	COG4934	collagen metabolic process
Vc3S01_RS11490	COG3568	Endonuclease Exonuclease Phosphatase
Vc3S01_RS11510	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
Vc3S01_RS11525	COG1288	antiporter activity
Vc3S01_RS11535	COG2186	Transcriptional regulator
Vc3S01_RS11545	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Vc3S01_RS11550	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Vc3S01_RS11580	COG0747	negative chemotaxis
Vc3S01_RS11585	COG4608	Belongs to the ABC transporter superfamily
Vc3S01_RS11590	COG0444	Belongs to the ABC transporter superfamily
Vc3S01_RS11595	COG0534	Mate efflux family protein
Vc3S01_RS11605	COG2824	Alkylphosphonate utilization operon protein PhnA
Vc3S01_RS11625	COG3119	arylsulfatase activity
Vc3S01_RS11665	COG0457	Tetratricopeptide repeat
Vc3S01_RS11735	COG4790	Type iii secretion
Vc3S01_RS11740	COG4794	Type iii secretion
Vc3S01_RS11745	COG4791	protein targeting
Vc3S01_RS11750	COG4792	protein secretion
Vc3S01_RS11765	COG3177	Filamentation induced by cAMP protein fic
Vc3S01_RS11795	COG4669	(LipO)protein
Vc3S01_RS11900	COG0784	Response regulator, receiver
Vc3S01_RS11900	COG2205	protein histidine kinase activity
Vc3S01_RS11910	COG0754	glutathionylspermidine amidase activity
Vc3S01_RS11920	COG3766	membrane
Vc3S01_RS11935	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
Vc3S01_RS11940	COG2885	chlorophyll binding
Vc3S01_RS11945	COG0823	Involved in the tonB-independent uptake of proteins
Vc3S01_RS11960	COG0811	peptide transport
Vc3S01_RS11965	COG0824	Thioesterase
Vc3S01_RS11975	COG4890	Cyd operon protein YbgT
Vc3S01_RS11980	COG1294	oxidase, subunit
Vc3S01_RS11985	COG1271	oxidase subunit
Vc3S01_RS11995	COG0632	four-way junction helicase activity
Vc3S01_RS12000	COG0840	transmembrane signaling receptor activity
Vc3S01_RS12015	COG1801	Protein of unknown function DUF72
Vc3S01_RS12035	COG0189	ligase activity
Vc3S01_RS12035	COG4067	protein conserved in archaea
Vc3S01_RS12060	COG0318	PFAM AMP-dependent synthetase and ligase
Vc3S01_RS12075	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
Vc3S01_RS12080	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
Vc3S01_RS12090	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Vc3S01_RS12095	COG1434	Gram-negative-bacterium-type cell wall biogenesis
Vc3S01_RS12100	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS12115	COG3070	regulator of competence-specific genes
Vc3S01_RS12135	COG0297	glycogen (starch) synthase activity
Vc3S01_RS12140	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
Vc3S01_RS12145	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Vc3S01_RS12175	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Vc3S01_RS12180	COG0542	response to heat
Vc3S01_RS12190	COG1278	Cold shock
Vc3S01_RS12200	COG1187	pseudouridine synthase activity
Vc3S01_RS12205	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
Vc3S01_RS12215	COG1199	ATP-dependent helicase activity
Vc3S01_RS12220	COG0730	response to heat
Vc3S01_RS12225	COG3923	Primosomal replication protein n
Vc3S01_RS12235	COG0708	Exodeoxyribonuclease III
Vc3S01_RS12275	COG1882	Formate acetyltransferase
Vc3S01_RS12285	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Vc3S01_RS12300	COG2766	serine protein kinase
Vc3S01_RS12305	COG2718	Belongs to the UPF0229 family
Vc3S01_RS12310	COG2719	SpoVR family
Vc3S01_RS12330	COG1132	(ABC) transporter
Vc3S01_RS12335	COG2333	competence protein COMEC
Vc3S01_RS12335	COG0658	competence protein
Vc3S01_RS12345	COG4591	ABC-type transport system involved in lipoprotein release permease component
Vc3S01_RS12350	COG1136	(ABC) transporter
Vc3S01_RS12355	COG4591	ABC-type transport system involved in lipoprotein release permease component
Vc3S01_RS12365	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
Vc3S01_RS12380	COG1252	NADH dehydrogenase
Vc3S01_RS12410	COG0537	adenosine 5'-monophosphoramidase activity
Vc3S01_RS12430	COG2217	Heavy metal translocating P-type atpase
Vc3S01_RS12440	COG0516	GMP reductase activity
Vc3S01_RS12440	COG0517	IMP dehydrogenase activity
Vc3S01_RS12445	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
Vc3S01_RS12450	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
Vc3S01_RS12455	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Vc3S01_RS12465	COG3706	GGDEF domain
Vc3S01_RS12480	COG3126	Type III secretion system lipoprotein chaperone (YscW)
Vc3S01_RS12485	COG1946	Acyl-CoA thioesterase
Vc3S01_RS12490	COG1522	sequence-specific DNA binding
Vc3S01_RS12515	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Vc3S01_RS12570	COG2855	membrane
Vc3S01_RS12575	COG0583	DNA-binding transcription factor activity
Vc3S01_RS12580	COG2190	(PTS) system
Vc3S01_RS12580	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Vc3S01_RS12580	COG1263	PTS System
Vc3S01_RS12595	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
Vc3S01_RS12600	COG0596	Alpha beta hydrolase
Vc3S01_RS12610	COG1169	isochorismate synthase
Vc3S01_RS12615	COG0436	Aminotransferase
Vc3S01_RS12620	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
Vc3S01_RS12640	COG1555	photosystem II stabilization
Vc3S01_RS12645	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Vc3S01_RS12650	COG0776	regulation of translation
Vc3S01_RS12655	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Vc3S01_RS12690	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
Vc3S01_RS12695	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
Vc3S01_RS12700	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
Vc3S01_RS12715	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Vc3S01_RS12720	COG0569	domain protein
Vc3S01_RS12725	COG0513	Belongs to the DEAD box helicase family
Vc3S01_RS12730	COG1253	flavin adenine dinucleotide binding
Vc3S01_RS12735	COG4771	TonB-dependent receptor
Vc3S01_RS12740	COG2977	Belongs to the P-Pant transferase superfamily
Vc3S01_RS12750	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
Vc3S01_RS12750	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
Vc3S01_RS12755	COG1535	isochorismatase
Vc3S01_RS12755	COG3433	isochorismatase activity
Vc3S01_RS12760	COG1021	2,3-dihydroxybenzoate-AMP ligase
Vc3S01_RS12765	COG1169	isochorismate synthase
Vc3S01_RS12775	COG1028	Short-chain dehydrogenase reductase Sdr
Vc3S01_RS12810	COG1104	cysteine desulfurase activity
Vc3S01_RS12830	COG0556	nucleotide-excision repair
Vc3S01_RS12875	COG2852	Protein conserved in bacteria
Vc3S01_RS12880	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
Vc3S01_RS12890	COG2951	lytic endotransglycosylase activity
Vc3S01_RS12905	COG2894	cell division
Vc3S01_RS12910	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
Vc3S01_RS12915	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
Vc3S01_RS12920	COG0318	PFAM AMP-dependent synthetase and ligase
Vc3S01_RS12925	COG2267	carboxylic ester hydrolase activity
Vc3S01_RS12930	COG3065	identical protein binding
Vc3S01_RS12940	COG1214	PFAM Peptidase M22, glycoprotease
Vc3S01_RS12945	COG1199	ATP-dependent helicase activity
Vc3S01_RS12955	COG0788	formyltetrahydrofolate deformylase activity
Vc3S01_RS12970	COG3102	Protein conserved in bacteria
Vc3S01_RS13000	COG1918	ferrous iron import across plasma membrane
Vc3S01_RS13005	COG4977	sequence-specific DNA binding
Vc3S01_RS13010	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
Vc3S01_RS13015	COG1121	(ABC) transporter
Vc3S01_RS13020	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Vc3S01_RS13035	COG0508	dehydrogenase complex catalyzes the overall conversion of
Vc3S01_RS13040	COG0567	Dehydrogenase, E1 component
Vc3S01_RS13050	COG1053	succinate dehydrogenase
Vc3S01_RS13055	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
Vc3S01_RS13070	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
Vc3S01_RS13085	COG0033	Phosphoglucomutase
Vc3S01_RS13090	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
Vc3S01_RS13095	COG0596	Alpha beta hydrolase
Vc3S01_RS13115	COG0735	belongs to the Fur family
Vc3S01_RS13120	COG2165	general secretion pathway protein
Vc3S01_RS13130	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Vc3S01_RS13130	COG1263	PTS System
Vc3S01_RS13130	COG2190	(PTS) system
Vc3S01_RS13140	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
Vc3S01_RS13145	COG1940	carbohydrate kinase activity
Vc3S01_RS13145	COG1846	Transcriptional regulator
Vc3S01_RS13150	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Vc3S01_RS13150	COG4651	solute:proton antiporter activity
Vc3S01_RS13155	COG0367	asparagine synthase
Vc3S01_RS13165	COG3104	oligopeptide transport
Vc3S01_RS13170	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
Vc3S01_RS13185	COG3710	Transcriptional regulator
Vc3S01_RS13205	COG0622	Phosphoesterase
Vc3S01_RS13235	COG1090	epimerase
Vc3S01_RS13240	COG0300	oxidoreductase activity
Vc3S01_RS13250	COG3118	belongs to the thioredoxin family
Vc3S01_RS13255	COG3118	belongs to the thioredoxin family
Vc3S01_RS13255	COG0457	Tetratricopeptide repeat
Vc3S01_RS13260	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
Vc3S01_RS13265	COG1215	transferase activity, transferring glycosyl groups
Vc3S01_RS13270	COG1215	transferase activity, transferring glycosyl groups
Vc3S01_RS13275	COG1192	Involved in chromosome partitioning
Vc3S01_RS13290	COG2194	sulfuric ester hydrolase activity
Vc3S01_RS13295	COG0330	HflC and HflK could
Vc3S01_RS13330	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
Vc3S01_RS13335	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
Vc3S01_RS13345	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
Vc3S01_RS13350	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Vc3S01_RS13355	COG2190	(PTS) system
Vc3S01_RS13360	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Vc3S01_RS13365	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Vc3S01_RS13375	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Vc3S01_RS13390	COG1705	Flagellar rod assembly protein muramidase FlgJ
Vc3S01_RS13390	COG3951	Flagellar rod assembly protein muramidase FlgJ
Vc3S01_RS13395	COG1706	bacterial-type flagellum-dependent cell motility
Vc3S01_RS13400	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
Vc3S01_RS13410	COG4787	bacterial-type flagellum-dependent cell motility
Vc3S01_RS13415	COG1749	Flagellar hook protein flgE
Vc3S01_RS13425	COG1558	bacterial-type flagellum-dependent cell motility
Vc3S01_RS13430	COG1815	bacterial-type flagellum-dependent cell motility
Vc3S01_RS13435	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
Vc3S01_RS13440	COG0784	Response regulator, receiver
Vc3S01_RS13440	COG0835	chemotaxis
Vc3S01_RS13500	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
Vc3S01_RS13515	COG2217	Heavy metal translocating P-type atpase
Vc3S01_RS13515	COG2608	mercury ion transmembrane transporter activity
Vc3S01_RS13555	COG2840	Smr protein MutS2
Vc3S01_RS13560	COG1187	pseudouridine synthase activity
Vc3S01_RS13565	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Vc3S01_RS13570	COG0737	Belongs to the 5'-nucleotidase family
Vc3S01_RS13585	COG2912	Transglutaminase-like superfamily
Vc3S01_RS13590	COG3094	Invasion gene expression up-regulator, SirB
Vc3S01_RS13595	COG2890	protein-(glutamine-N5) methyltransferase activity
Vc3S01_RS13620	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
Vc3S01_RS13745	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Vc3S01_RS13755	COG1702	phosphate starvation-inducible protein PhoH
Vc3S01_RS13765	COG4535	Mg2 and Co2 transporter CorC
Vc3S01_RS13770	COG0815	Transfers the fatty acyl group on membrane lipoproteins
Vc3S01_RS13775	COG2888	peptidyl-tyrosine sulfation
Vc3S01_RS13785	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
Vc3S01_RS13790	COG1466	dna polymerase III delta subunit
Vc3S01_RS13795	COG0799	negative regulation of ribosome biogenesis
Vc3S01_RS13805	COG0768	penicillin binding
Vc3S01_RS13810	COG0772	Belongs to the SEDS family
Vc3S01_RS13815	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
Vc3S01_RS13820	COG1686	Belongs to the peptidase S11 family
Vc3S01_RS13840	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
Vc3S01_RS13845	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
Vc3S01_RS13860	COG0366	Alpha amylase catalytic
Vc3S01_RS13865	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Vc3S01_RS13865	COG1263	PTS System
Vc3S01_RS13875	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
Vc3S01_RS13880	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
Vc3S01_RS13885	COG2011	ABC-type metal ion transport system permease component
Vc3S01_RS13890	COG1464	Belongs to the NlpA lipoprotein family
Vc3S01_RS13900	COG0737	Belongs to the 5'-nucleotidase family
Vc3S01_RS13905	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
Vc3S01_RS13930	COG1611	Belongs to the LOG family
Vc3S01_RS13950	COG2363	Small membrane protein
Vc3S01_RS13960	COG0583	DNA-binding transcription factor activity
Vc3S01_RS13975	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
Vc3S01_RS13985	COG0142	geranyltranstransferase activity
Vc3S01_RS13995	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
Vc3S01_RS14000	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
Vc3S01_RS14025	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Vc3S01_RS14025	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
Vc3S01_RS14030	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Vc3S01_RS14035	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
Vc3S01_RS14050	COG1073	alpha beta
Vc3S01_RS14060	COG2252	PERMEase
Vc3S01_RS14065	COG2195	Cleaves the N-terminal amino acid of tripeptides
Vc3S01_RS14090	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
Vc3S01_RS14090	COG0047	phosphoribosylformylglycinamidine synthase activity
Vc3S01_RS14105	COG0590	tRNA wobble adenosine to inosine editing
Vc3S01_RS14115	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
Vc3S01_RS14140	COG4969	Belongs to the N-Me-Phe pilin family
Vc3S01_RS14160	COG1301	dicarboxylic acid transport
Vc3S01_RS14175	COG0497	DNA recombination
Vc3S01_RS14180	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Vc3S01_RS14185	COG2914	Belongs to the UPF0125 (RnfH) family
Vc3S01_RS14190	COG2867	negative regulation of translational initiation
Vc3S01_RS14205	COG0583	DNA-binding transcription factor activity
Vc3S01_RS14210	COG1289	transmembrane transporter activity
Vc3S01_RS14230	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
Vc3S01_RS14235	COG1574	metal-dependent hydrolase with the TIM-barrel fold
Vc3S01_RS14240	COG0668	transmembrane transport
Vc3S01_RS14260	COG0583	DNA-binding transcription factor activity
Vc3S01_RS14270	COG1115	amino acid carrier protein
Vc3S01_RS14275	COG1584	GPR1 FUN34 yaaH family protein
Vc3S01_RS14285	COG1757	Na H antiporter
Vc3S01_RS14295	COG0517	IMP dehydrogenase activity
Vc3S01_RS14295	COG0516	GMP reductase activity
Vc3S01_RS14310	COG2203	Gaf domain
Vc3S01_RS14310	COG2199	diguanylate cyclase activity
Vc3S01_RS14325	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Vc3S01_RS14330	COG2976	Protein conserved in bacteria
Vc3S01_RS14345	COG1426	Protein conserved in bacteria
Vc3S01_RS14365	COG2975	iron-sulfur cluster assembly
Vc3S01_RS14370	COG0633	Ferredoxin
Vc3S01_RS14385	COG0316	Belongs to the HesB IscA family
Vc3S01_RS14390	COG0822	iron-sulfur transferase activity
Vc3S01_RS14405	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
Vc3S01_RS14410	COG0483	inositol monophosphate 1-phosphatase activity
Vc3S01_RS14415	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Vc3S01_RS14420	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Vc3S01_RS14425	COG1862	Preprotein translocase
Vc3S01_RS14450	COG0517	IMP dehydrogenase activity
Vc3S01_RS14460	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
Vc3S01_RS14465	COG0583	DNA-binding transcription factor activity
Vc3S01_RS14470	COG0450	alkyl hydroperoxide reductase
Vc3S01_RS14500	COG0704	Plays a role in the regulation of phosphate uptake
Vc3S01_RS14505	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
Vc3S01_RS14510	COG0581	inorganic phosphate transmembrane transporter activity
Vc3S01_RS14515	COG0573	inorganic phosphate transmembrane transporter activity
Vc3S01_RS14520	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
Vc3S01_RS14525	COG0248	Ppx GppA phosphatase
Vc3S01_RS14535	COG5002	protein histidine kinase activity
Vc3S01_RS14540	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS14550	COG0826	peptidase U32
Vc3S01_RS14555	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Vc3S01_RS14620	COG0542	response to heat
Vc3S01_RS14625	COG1496	oxidoreductase activity
Vc3S01_RS14630	COG0564	pseudouridine synthase activity
Vc3S01_RS14635	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Vc3S01_RS14640	COG0741	lytic transglycosylase activity
Vc3S01_RS14645	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
Vc3S01_RS14650	COG0077	Prephenate dehydratase
Vc3S01_RS14650	COG1605	Chorismate mutase
Vc3S01_RS14655	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
Vc3S01_RS14670	COG0488	(ABC) transporter
Vc3S01_RS14680	COG0739	heme binding
Vc3S01_RS14685	COG0287	Prephenate dehydrogenase
Vc3S01_RS14685	COG1605	Chorismate mutase
Vc3S01_RS14690	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Vc3S01_RS14700	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
Vc3S01_RS14720	COG1966	Carbon starvation protein
Vc3S01_RS14725	COG3275	phosphorelay sensor kinase activity
Vc3S01_RS14730	COG3279	Response regulator of the LytR AlgR family
Vc3S01_RS14735	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
Vc3S01_RS14740	COG1047	Peptidyl-prolyl cis-trans
Vc3S01_RS14755	COG0196	riboflavin kinase activity
Vc3S01_RS14760	COG0728	peptidoglycan biosynthetic process
Vc3S01_RS14765	COG0268	Binds directly to 16S ribosomal RNA
Vc3S01_RS14770	COG0640	Transcriptional regulator
Vc3S01_RS14775	COG0583	DNA-binding transcription factor activity
Vc3S01_RS14780	COG1283	sodium-dependent phosphate transmembrane transporter activity
Vc3S01_RS14795	COG0730	response to heat
Vc3S01_RS14820	COG0667	Aldo Keto reductase
Vc3S01_RS14845	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
Vc3S01_RS14850	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Vc3S01_RS14855	COG4974	Belongs to the 'phage' integrase family
Vc3S01_RS14860	COG0716	FMN binding
Vc3S01_RS14875	COG0513	Belongs to the DEAD box helicase family
Vc3S01_RS14885	COG3022	response to hydroperoxide
Vc3S01_RS14890	COG1115	amino acid carrier protein
Vc3S01_RS14930	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
Vc3S01_RS14935	COG0083	homoserine kinase activity
Vc3S01_RS14950	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
Vc3S01_RS14965	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS14975	COG5002	protein histidine kinase activity
Vc3S01_RS14975	COG2198	Histidine kinase
Vc3S01_RS14975	COG0784	Response regulator, receiver
Vc3S01_RS14985	COG5001	Diguanylate cyclase
Vc3S01_RS14985	COG3706	GGDEF domain
Vc3S01_RS14985	COG2203	Gaf domain
Vc3S01_RS14985	COG4251	negative regulation of phosphorylation
Vc3S01_RS14990	COG1242	4 iron, 4 sulfur cluster binding
Vc3S01_RS14995	COG0070	glutamate synthase
Vc3S01_RS14995	COG0069	glutamate synthase activity
Vc3S01_RS14995	COG0067	glutamate synthase
Vc3S01_RS15005	COG0067	glutamate synthase
Vc3S01_RS15005	COG0069	glutamate synthase activity
Vc3S01_RS15005	COG0070	glutamate synthase
Vc3S01_RS15010	COG0493	'glutamate synthase
Vc3S01_RS15035	COG2860	membrane
Vc3S01_RS15040	COG0583	DNA-binding transcription factor activity
Vc3S01_RS15045	COG0730	response to heat
Vc3S01_RS15060	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Vc3S01_RS15065	COG0505	Belongs to the CarA family
Vc3S01_RS15075	COG0494	nUDIX hydrolase
Vc3S01_RS15095	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
Vc3S01_RS15100	COG0849	cell division
Vc3S01_RS15105	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
Vc3S01_RS15120	COG0772	Belongs to the SEDS family
Vc3S01_RS15135	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
Vc3S01_RS15140	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Vc3S01_RS15145	COG0768	penicillin binding
Vc3S01_RS15150	COG3116	cell division
Vc3S01_RS15170	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
Vc3S01_RS15185	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
Vc3S01_RS15190	COG2823	Periplasmic or secreted lipoprotein
Vc3S01_RS15195	COG2969	positive regulation of protein catabolic process
Vc3S01_RS15200	COG0625	glutathione transferase activity
Vc3S01_RS15205	COG2857	Cytochrome c1
Vc3S01_RS15210	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
Vc3S01_RS15215	COG0723	plastoquinol--plastocyanin reductase activity
Vc3S01_RS15230	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
Vc3S01_RS15235	COG3105	Protein conserved in bacteria
Vc3S01_RS15240	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Vc3S01_RS15245	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Vc3S01_RS15250	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
Vc3S01_RS15260	COG3150	esterase
Vc3S01_RS15270	COG3151	Protein conserved in bacteria
Vc3S01_RS15275	COG0494	nUDIX hydrolase
Vc3S01_RS15280	COG1538	Outer membrane efflux protein
Vc3S01_RS15290	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
Vc3S01_RS15300	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Vc3S01_RS15305	COG3025	triphosphatase activity
Vc3S01_RS15310	COG1392	Phosphate transport regulator
Vc3S01_RS15315	COG0306	phosphate transporter
Vc3S01_RS15320	COG4991	sh3 domain protein
Vc3S01_RS15325	COG0405	Gamma-glutamyltransferase
Vc3S01_RS15335	COG3267	Type II secretory pathway component ExeA
Vc3S01_RS15335	COG3409	Peptidoglycan-binding domain 1 protein
Vc3S01_RS15350	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Vc3S01_RS15355	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
Vc3S01_RS15365	COG0596	Alpha beta hydrolase
Vc3S01_RS15370	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
Vc3S01_RS15375	COG0828	Belongs to the bacterial ribosomal protein bS21 family
Vc3S01_RS15380	COG1610	YqeY-like protein
Vc3S01_RS15385	COG0358	DNA primase activity
Vc3S01_RS15425	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
Vc3S01_RS15425	COG2213	PTS system mannitol-specific
Vc3S01_RS15435	COG3722	fumarate hydratase activity
Vc3S01_RS15440	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Vc3S01_RS15445	COG5002	protein histidine kinase activity
Vc3S01_RS15465	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
Vc3S01_RS15470	COG1349	DNA-binding transcription factor activity
Vc3S01_RS15475	COG0469	pyruvate kinase activity
Vc3S01_RS15485	COG3706	GGDEF domain
Vc3S01_RS15490	COG0440	acetolactate synthase activity
Vc3S01_RS15495	COG0028	Belongs to the TPP enzyme family
Vc3S01_RS15500	COG1022	Amp-dependent synthetase and ligase
Vc3S01_RS15505	COG0583	DNA-binding transcription factor activity
Vc3S01_RS15535	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Vc3S01_RS15540	COG0473	3-isopropylmalate dehydrogenase activity
Vc3S01_RS15560	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
Vc3S01_RS15565	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
Vc3S01_RS15570	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Vc3S01_RS15575	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
Vc3S01_RS15600	COG3610	response to peptide
Vc3S01_RS15605	COG2966	Psort location CytoplasmicMembrane, score
Vc3S01_RS15620	COG0261	This protein binds to 23S rRNA in the presence of protein L20
Vc3S01_RS15625	COG0142	geranyltranstransferase activity
Vc3S01_RS15645	COG2358	TRAP transporter, solute receptor (TAXI family
Vc3S01_RS15660	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
Vc3S01_RS15665	COG1178	ABC-type Fe3 transport system permease component
Vc3S01_RS15670	COG4143	(ABC) transporter
Vc3S01_RS15675	COG0163	prenyltransferase activity
Vc3S01_RS15680	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Vc3S01_RS15690	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
Vc3S01_RS15705	COG2105	PFAM AIG2 family protein
Vc3S01_RS15715	COG0729	surface antigen
Vc3S01_RS15720	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Vc3S01_RS15730	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
Vc3S01_RS15745	COG1136	(ABC) transporter
Vc3S01_RS15765	COG0529	Catalyzes the synthesis of activated sulfate
Vc3S01_RS15770	COG3273	potassium ion transport
Vc3S01_RS15770	COG0471	metal ion transport
Vc3S01_RS15785	COG1648	precorrin-2 dehydrogenase activity
Vc3S01_RS15785	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
Vc3S01_RS15790	COG0737	Belongs to the 5'-nucleotidase family
Vc3S01_RS15800	COG0513	Belongs to the DEAD box helicase family
Vc3S01_RS15805	COG2153	protein acetylation
Vc3S01_RS15820	COG0545	Peptidyl-prolyl cis-trans isomerase
Vc3S01_RS15830	COG0203	ribosomal protein L17
Vc3S01_RS15835	COG0202	RNA polymerase activity
Vc3S01_RS15845	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
Vc3S01_RS15850	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
Vc3S01_RS15855	COG0257	Belongs to the bacterial ribosomal protein bL36 family
Vc3S01_RS15860	COG0201	protein transport
Vc3S01_RS15870	COG1841	ribosomal large subunit assembly
Vc3S01_RS15955	COG0088	Forms part of the polypeptide exit tunnel
Vc3S01_RS15975	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
Vc3S01_RS15980	COG1609	Transcriptional regulator
Vc3S01_RS16000	COG1575	Belongs to the MenA family. Type 1 subfamily
Vc3S01_RS16005	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
Vc3S01_RS16015	COG1494	fructose-1,6-bisphosphatase
Vc3S01_RS16040	COG0149	triose-phosphate isomerase activity
Vc3S01_RS16075	COG1216	Glycosyl transferase, family 2
Vc3S01_RS16100	COG1215	transferase activity, transferring glycosyl groups
Vc3S01_RS16105	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
Vc3S01_RS16110	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Vc3S01_RS16115	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
Vc3S01_RS16120	COG1215	transferase activity, transferring glycosyl groups
Vc3S01_RS16145	COG2244	polysaccharide biosynthetic process
Vc3S01_RS16150	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
Vc3S01_RS16200	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
Vc3S01_RS16210	COG1560	Kdo2-lipid A biosynthetic process
Vc3S01_RS16220	COG0438	transferase activity, transferring glycosyl groups
Vc3S01_RS16225	COG1519	Transferase
Vc3S01_RS16230	COG1216	Glycosyl transferase, family 2
Vc3S01_RS16230	COG1442	glycosyl transferase family 8
Vc3S01_RS16235	COG5039	Polysaccharide pyruvyl transferase
Vc3S01_RS16240	COG3642	lipopolysaccharide core region biosynthetic process
Vc3S01_RS16245	COG0859	PFAM glycosyl transferase family 9
Vc3S01_RS16255	COG0438	transferase activity, transferring glycosyl groups
Vc3S01_RS16270	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
Vc3S01_RS16310	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
Vc3S01_RS16320	COG1560	Kdo2-lipid A biosynthetic process
Vc3S01_RS16325	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
Vc3S01_RS16330	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
Vc3S01_RS16335	COG1561	YicC-like family, N-terminal region
Vc3S01_RS16355	COG4608	Belongs to the ABC transporter superfamily
Vc3S01_RS16360	COG0444	Belongs to the ABC transporter superfamily
Vc3S01_RS16365	COG0747	negative chemotaxis
Vc3S01_RS16370	COG4239	(ABC) transporter, permease
Vc3S01_RS16375	COG4174	ABC transporter (Permease)
Vc3S01_RS16385	COG4206	TonB-dependent receptor
Vc3S01_RS16400	COG0811	peptide transport
Vc3S01_RS16405	COG0848	biopolymer transport protein
Vc3S01_RS16420	COG0194	GDP metabolic process
Vc3S01_RS16425	COG1758	RNA polymerase activity
Vc3S01_RS16430	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Vc3S01_RS16435	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Vc3S01_RS16440	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
Vc3S01_RS16450	COG2233	PERMEase
Vc3S01_RS16465	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Vc3S01_RS16475	COG2183	response to ionizing radiation
Vc3S01_RS16490	COG1040	competence protein
Vc3S01_RS16500	COG0494	nUDIX hydrolase
Vc3S01_RS16505	COG1218	3'(2'),5'-bisphosphate nucleotidase
Vc3S01_RS16515	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
Vc3S01_RS16520	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
Vc3S01_RS16525	COG3156	type II secretion system protein K
Vc3S01_RS16530	COG4795	General secretion pathway protein
Vc3S01_RS16535	COG2165	general secretion pathway protein
Vc3S01_RS16540	COG2165	general secretion pathway protein
Vc3S01_RS16545	COG2165	general secretion pathway protein
Vc3S01_RS16550	COG1459	type II secretion system
Vc3S01_RS16555	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Vc3S01_RS16565	COG3031	protein transport across the cell outer membrane
Vc3S01_RS16570	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
Vc3S01_RS16590	COG0456	acetyltransferase
Vc3S01_RS16595	COG1490	D-aminoacyl-tRNA deacylase activity
Vc3S01_RS16615	COG1217	gtp-binding protein TYPA
Vc3S01_RS16625	COG0174	glutamine synthetase
Vc3S01_RS16635	COG3852	Histidine kinase
Vc3S01_RS16640	COG2204	response regulator
Vc3S01_RS16645	COG3300	MHYT domain
Vc3S01_RS16645	COG5001	Diguanylate cyclase
Vc3S01_RS16650	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
Vc3S01_RS16680	COG0218	Necessary for normal cell division and for the maintenance of normal septation
Vc3S01_RS16690	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Vc3S01_RS16690	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Vc3S01_RS16715	COG0084	hydrolase, TatD family'
Vc3S01_RS16730	COG0805	protein transport
Vc3S01_RS16735	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
Vc3S01_RS16750	COG3165	ubiquinone biosynthetic process from chorismate
Vc3S01_RS16760	COG1322	Protein conserved in bacteria
Vc3S01_RS16775	COG1910	domain protein
Vc3S01_RS16795	COG2081	HI0933 family
Vc3S01_RS16805	COG1528	Iron-storage protein
Vc3S01_RS16810	COG0589	response to stress
Vc3S01_RS16830	COG5002	protein histidine kinase activity
Vc3S01_RS16830	COG5001	Diguanylate cyclase
Vc3S01_RS16835	COG1522	sequence-specific DNA binding
Vc3S01_RS16850	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
Vc3S01_RS16860	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Vc3S01_RS16905	COG3550	peptidyl-serine autophosphorylation
Vc3S01_RS16945	COG0800	Aldolase
Vc3S01_RS16950	COG2610	gluconate transmembrane transporter activity
Vc3S01_RS16955	COG3265	gluconokinase activity
Vc3S01_RS16960	COG0129	dihydroxy-acid dehydratase activity
Vc3S01_RS16970	COG2076	Multidrug Resistance protein
Vc3S01_RS16975	COG0583	DNA-binding transcription factor activity
Vc3S01_RS16980	COG1609	Transcriptional regulator
Vc3S01_RS16985	COG0515	serine threonine protein kinase
Vc3S01_RS17015	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Vc3S01_RS17020	COG0601	transmembrane transport
Vc3S01_RS17025	COG4166	transmembrane transport
Vc3S01_RS17030	COG4172	Belongs to the ABC transporter superfamily
Vc3S01_RS17080	COG1309	transcriptional regulator
Vc3S01_RS17085	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Vc3S01_RS17090	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Vc3S01_RS17100	COG2960	long-chain fatty acid transporting porin activity
Vc3S01_RS17110	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
Vc3S01_RS17115	COG0583	DNA-binding transcription factor activity
Vc3S01_RS17165	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
Vc3S01_RS17190	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
Vc3S01_RS17195	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
Vc3S01_RS17200	COG0551	DNA topoisomerase type I activity
Vc3S01_RS17210	COG0758	DNA mediated transformation
Vc3S01_RS17220	COG0242	peptide deformylase activity
Vc3S01_RS17230	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
Vc3S01_RS17230	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Vc3S01_RS17235	COG0569	domain protein
Vc3S01_RS17240	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Vc3S01_RS17250	COG1272	protein, Hemolysin III
Vc3S01_RS17255	COG4326	sporulation control protein
Vc3S01_RS17265	COG3084	Protein conserved in bacteria
Vc3S01_RS17275	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
Vc3S01_RS17280	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Vc3S01_RS17285	COG0204	Acyl-transferase
Vc3S01_RS17295	COG2199	diguanylate cyclase activity
Vc3S01_RS17300	COG0606	chelatase, subunit chli
Vc3S01_RS17310	COG3978	acetolactate synthase activity
Vc3S01_RS17315	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
Vc3S01_RS17320	COG0129	dihydroxy-acid dehydratase activity
Vc3S01_RS17330	COG3706	GGDEF domain
Vc3S01_RS17335	COG0583	DNA-binding transcription factor activity
Vc3S01_RS17340	COG2814	Major facilitator Superfamily
Vc3S01_RS17345	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Vc3S01_RS17350	COG0765	amino acid transport
Vc3S01_RS17360	COG0355	proton-transporting ATP synthase activity, rotational mechanism
Vc3S01_RS17370	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
Vc3S01_RS17400	COG3312	ion transport
Vc3S01_RS17405	COG1475	DNA binding
Vc3S01_RS17410	COG1192	Involved in chromosome partitioning
Vc3S01_RS17440	COG4608	Belongs to the ABC transporter superfamily
Vc3S01_RS17445	COG0444	Belongs to the ABC transporter superfamily
Vc3S01_RS17455	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
Vc3S01_RS17455	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Vc3S01_RS17480	COG0772	Belongs to the SEDS family
Vc3S01_RS17495	COG1566	PFAM secretion protein HlyD family protein
Vc3S01_RS17500	COG0583	DNA-binding transcription factor activity
Vc3S01_RS17510	COG1136	(ABC) transporter
Vc3S01_RS17530	COG3275	phosphorelay sensor kinase activity
Vc3S01_RS17535	COG3279	Response regulator of the LytR AlgR family
Vc3S01_RS17545	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Vc3S01_RS17565	COG0786	glutamate:sodium symporter activity
Vc3S01_RS17570	COG1028	Short-chain dehydrogenase reductase Sdr
Vc3S01_RS17605	COG1131	(ABC) transporter
Vc3S01_RS17610	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Vc3S01_RS17615	COG0786	glutamate:sodium symporter activity
Vc3S01_RS17640	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Vc3S01_RS17650	COG1609	Transcriptional regulator
Vc3S01_RS17650	COG2207	Transcriptional regulator
Vc3S01_RS17655	COG0829	nickel cation binding
Vc3S01_RS17660	COG0831	urea catabolic process
Vc3S01_RS17665	COG0832	Belongs to the urease beta subunit family
Vc3S01_RS17670	COG0804	urea catabolic process
Vc3S01_RS17675	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
Vc3S01_RS17680	COG0830	nickel cation binding
Vc3S01_RS17685	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
Vc3S01_RS17695	COG2207	Transcriptional regulator
Vc3S01_RS17700	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
Vc3S01_RS17710	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Vc3S01_RS17720	COG0659	secondary active sulfate transmembrane transporter activity
Vc3S01_RS17735	COG0251	oxidation-reduction process
Vc3S01_RS17740	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Vc3S01_RS17795	COG2259	Doxx family
Vc3S01_RS17805	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
Vc3S01_RS17810	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
Vc3S01_RS17820	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
Vc3S01_RS17870	COG5001	Diguanylate cyclase
Vc3S01_RS17880	COG1609	Transcriptional regulator
Vc3S01_RS17895	COG0395	ABC-type sugar transport system, permease component
Vc3S01_RS17900	COG2723	6-phospho-beta-galactosidase activity
Vc3S01_RS17905	COG3842	ATPase activity
Vc3S01_RS17910	COG1609	Transcriptional regulator
Vc3S01_RS17920	COG0747	negative chemotaxis
Vc3S01_RS17930	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Vc3S01_RS17935	COG0444	Belongs to the ABC transporter superfamily
Vc3S01_RS17940	COG4608	Belongs to the ABC transporter superfamily
Vc3S01_RS17950	COG1609	Transcriptional regulator
Vc3S01_RS17975	COG1472	Belongs to the glycosyl hydrolase 3 family
Vc3S01_RS17980	COG0534	Mate efflux family protein
Vc3S01_RS17985	COG0564	pseudouridine synthase activity
Vc3S01_RS17990	COG0561	phosphatase activity
Vc3S01_RS18010	COG3152	Membrane
Vc3S01_RS18025	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
Vc3S01_RS18045	COG0583	DNA-binding transcription factor activity
Vc3S01_RS18100	COG2076	Multidrug Resistance protein
Vc3S01_RS18115	COG0534	Mate efflux family protein
Vc3S01_RS18130	COG1357	PFAM Pentapeptide repeats (8 copies)
Vc3S01_RS18135	COG3047	cAMP biosynthetic process
Vc3S01_RS18145	COG2814	Major facilitator Superfamily
Vc3S01_RS18165	COG3408	Glycogen debranching enzyme
Vc3S01_RS18165	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
Vc3S01_RS18255	COG3835	regulator
Vc3S01_RS18260	COG1929	Belongs to the glycerate kinase type-1 family
Vc3S01_RS18265	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Vc3S01_RS18305	COG0456	acetyltransferase
Vc3S01_RS18325	COG1028	Short-chain dehydrogenase reductase Sdr
Vc3S01_RS18335	COG3005	denitrification pathway
Vc3S01_RS18340	COG0243	molybdopterin cofactor binding
Vc3S01_RS18345	COG0671	phosphoesterase, PA-phosphatase related
Vc3S01_RS18360	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
Vc3S01_RS18365	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Vc3S01_RS18370	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Vc3S01_RS18375	COG1116	anion transmembrane transporter activity
Vc3S01_RS18380	COG0351	phosphomethylpyrimidine kinase
Vc3S01_RS18385	COG0312	modulator of DNA gyrase
Vc3S01_RS18390	COG0312	modulator of DNA gyrase
Vc3S01_RS18465	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Vc3S01_RS18475	COG0584	glycerophosphoryl diester phosphodiesterase
Vc3S01_RS18480	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS18500	COG0811	peptide transport
Vc3S01_RS18505	COG0811	peptide transport
Vc3S01_RS18510	COG0848	biopolymer transport protein
Vc3S01_RS18555	COG0803	Belongs to the bacterial solute-binding protein 9 family
Vc3S01_RS18560	COG1121	(ABC) transporter
Vc3S01_RS18565	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Vc3S01_RS18580	COG1770	oligopeptidase
Vc3S01_RS18585	COG2814	Major facilitator Superfamily
Vc3S01_RS18590	COG0010	Belongs to the arginase family
Vc3S01_RS18595	COG1166	arginine decarboxylase activity
Vc3S01_RS18605	COG4067	protein conserved in archaea
Vc3S01_RS18605	COG0189	ligase activity
Vc3S01_RS18610	COG0189	ligase activity
Vc3S01_RS18620	COG0583	DNA-binding transcription factor activity
Vc3S01_RS18665	COG1114	Component of the transport system for branched-chain amino acids
Vc3S01_RS18680	COG0579	oxidoreductase
Vc3S01_RS18685	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
Vc3S01_RS18700	COG3033	Beta-eliminating lyase
Vc3S01_RS18720	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
Vc3S01_RS18725	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
Vc3S01_RS18760	COG3706	GGDEF domain
Vc3S01_RS18765	COG0415	Belongs to the DNA photolyase family
Vc3S01_RS18770	COG3046	protein related to deoxyribodipyrimidine photolyase
Vc3S01_RS18785	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Vc3S01_RS18785	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Vc3S01_RS18790	COG1765	OsmC-like protein
Vc3S01_RS18825	COG1011	Hydrolase
Vc3S01_RS18850	COG3240	lipase activity
Vc3S01_RS18870	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
Vc3S01_RS18880	COG1840	ABC-type Fe3 transport system, periplasmic component
Vc3S01_RS18885	COG3842	ATPase activity
Vc3S01_RS18910	COG2990	Protein conserved in bacteria
Vc3S01_RS18920	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Vc3S01_RS18925	COG2866	Carboxypeptidase
Vc3S01_RS18935	COG0583	DNA-binding transcription factor activity
Vc3S01_RS18960	COG3104	oligopeptide transport
Vc3S01_RS18965	COG1760	l-serine dehydratase
Vc3S01_RS18990	COG0741	lytic transglycosylase activity
Vc3S01_RS18990	COG1388	LysM domain
Vc3S01_RS19010	COG1815	bacterial-type flagellum-dependent cell motility
Vc3S01_RS19015	COG1558	bacterial-type flagellum-dependent cell motility
Vc3S01_RS19020	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
Vc3S01_RS19025	COG1749	Flagellar hook protein flgE
Vc3S01_RS19030	COG4787	bacterial-type flagellum-dependent cell motility
Vc3S01_RS19035	COG4786	Flagellar basal body rod
Vc3S01_RS19040	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
Vc3S01_RS19045	COG1706	bacterial-type flagellum-dependent cell motility
Vc3S01_RS19055	COG4786	Flagellar basal body rod
Vc3S01_RS19055	COG1256	bacterial-type flagellum assembly
Vc3S01_RS19060	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Vc3S01_RS19125	COG0384	phenazine biosynthesis protein PhzF
Vc3S01_RS19150	COG1360	Flagellar Motor Protein
Vc3S01_RS19155	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
Vc3S01_RS19160	COG1191	sigma factor activity
Vc3S01_RS19165	COG1580	Controls the rotational direction of flagella during chemotaxis
Vc3S01_RS19180	COG1516	flagellar protein fliS
Vc3S01_RS19185	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
Vc3S01_RS19195	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
Vc3S01_RS19210	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
Vc3S01_RS19220	COG1987	bacterial-type flagellum assembly
Vc3S01_RS19280	COG2200	EAL domain
Vc3S01_RS19305	COG3121	Chaperone
Vc3S01_RS19320	COG3121	Chaperone
Vc3S01_RS19370	COG0346	lactoylglutathione lyase activity
Vc3S01_RS19395	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS19420	COG0156	8-amino-7-oxononanoate synthase activity
Vc3S01_RS19425	COG1063	alcohol dehydrogenase
Vc3S01_RS19450	COG2199	diguanylate cyclase activity
Vc3S01_RS19450	COG2203	Gaf domain
Vc3S01_RS19455	COG2223	nitrite transmembrane transporter activity
Vc3S01_RS19460	COG1063	alcohol dehydrogenase
Vc3S01_RS19470	COG0668	transmembrane transport
Vc3S01_RS19480	COG1304	FMN binding
Vc3S01_RS19485	COG1620	l-lactate permease
Vc3S01_RS19490	COG0583	DNA-binding transcription factor activity
Vc3S01_RS19495	COG1505	serine-type exopeptidase activity
Vc3S01_RS19500	COG4172	Belongs to the ABC transporter superfamily
Vc3S01_RS19510	COG1067	ATP-dependent peptidase activity
Vc3S01_RS19520	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
Vc3S01_RS19540	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Vc3S01_RS19545	COG0437	4 iron, 4 sulfur cluster binding
Vc3S01_RS19550	COG0348	domain, Protein
Vc3S01_RS19575	COG1122	ATPase activity
Vc3S01_RS19585	COG1566	PFAM secretion protein HlyD family protein
Vc3S01_RS19615	COG0813	purine-nucleoside phosphorylase activity
Vc3S01_RS19620	COG3272	Protein of unknown function (DUF1722)
Vc3S01_RS19625	COG0789	Transcriptional regulator
Vc3S01_RS19630	COG0415	Belongs to the DNA photolyase family
Vc3S01_RS19635	COG1376	ErfK ybiS ycfS ynhG family protein
Vc3S01_RS19635	COG1388	LysM domain
Vc3S01_RS19645	COG0513	Belongs to the DEAD box helicase family
Vc3S01_RS19650	COG1770	oligopeptidase
Vc3S01_RS19655	COG4771	TonB-dependent receptor
Vc3S01_RS19675	COG0840	transmembrane signaling receptor activity
Vc3S01_RS19685	COG0573	inorganic phosphate transmembrane transporter activity
Vc3S01_RS19690	COG0581	inorganic phosphate transmembrane transporter activity
Vc3S01_RS19695	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
Vc3S01_RS19710	COG2304	oxidoreductase activity
Vc3S01_RS19730	COG0714	Associated with various cellular activities
Vc3S01_RS19760	COG2197	response regulator
Vc3S01_RS19785	COG0110	maltose O-acetyltransferase activity
Vc3S01_RS19795	COG4191	Histidine kinase
Vc3S01_RS19800	COG1028	Short-chain dehydrogenase reductase Sdr
Vc3S01_RS19850	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
Vc3S01_RS19855	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
Vc3S01_RS19865	COG1252	NADH dehydrogenase
Vc3S01_RS19870	COG1301	dicarboxylic acid transport
Vc3S01_RS19875	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Vc3S01_RS19920	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Vc3S01_RS19920	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Vc3S01_RS19920	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Vc3S01_RS19925	COG2207	Transcriptional regulator
Vc3S01_RS19935	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Vc3S01_RS19940	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Vc3S01_RS19945	COG0583	DNA-binding transcription factor activity
Vc3S01_RS19955	COG2084	Dehydrogenase
Vc3S01_RS19960	COG0753	catalase activity
Vc3S01_RS19970	COG2130	NADP-dependent
Vc3S01_RS19975	COG1309	transcriptional regulator
Vc3S01_RS20020	COG3206	protein involved in exopolysaccharide biosynthesis
Vc3S01_RS20020	COG0489	protein tyrosine kinase activity
Vc3S01_RS20035	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
Vc3S01_RS20040	COG2200	EAL domain
Vc3S01_RS20050	COG3842	ATPase activity
Vc3S01_RS20065	COG1175	transmembrane transport
Vc3S01_RS20070	COG3833	ABC-type maltose transport systems, permease component
Vc3S01_RS20100	COG2354	Protein conserved in bacteria
Vc3S01_RS20115	COG0401	homolog of Blt101
Vc3S01_RS20120	COG0633	Ferredoxin
Vc3S01_RS20120	COG3217	Mosc domain protein beta barrel domain protein
Vc3S01_RS20120	COG3217	Mosc domain protein beta barrel domain protein
Vc3S01_RS20120	COG0633	Ferredoxin
Vc3S01_RS20130	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
Vc3S01_RS20170	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
Vc3S01_RS20175	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Vc3S01_RS20185	COG0848	biopolymer transport protein
Vc3S01_RS20190	COG0811	peptide transport
Vc3S01_RS20195	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
Vc3S01_RS20205	COG3721	Heme iron utilization protein
Vc3S01_RS20210	COG0748	coenzyme F420 binding
Vc3S01_RS20225	COG0835	chemotaxis
Vc3S01_RS20225	COG0784	Response regulator, receiver
Vc3S01_RS20230	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
Vc3S01_RS20235	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
Vc3S01_RS20240	COG0366	Alpha amylase catalytic
Vc3S01_RS20250	COG0583	DNA-binding transcription factor activity
Vc3S01_RS20280	COG0583	DNA-binding transcription factor activity
Vc3S01_RS20295	COG2249	NAD(P)H dehydrogenase (quinone) activity
Vc3S01_RS20300	COG0583	DNA-binding transcription factor activity
Vc3S01_RS20335	COG4977	sequence-specific DNA binding
Vc3S01_RS20340	COG0673	inositol 2-dehydrogenase activity
Vc3S01_RS20350	COG2194	sulfuric ester hydrolase activity
Vc3S01_RS20355	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
Vc3S01_RS20365	COG2205	protein histidine kinase activity
Vc3S01_RS20370	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS20390	COG4221	oxidoreductase activity
Vc3S01_RS20405	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
Vc3S01_RS20425	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Vc3S01_RS20435	COG2814	Major facilitator Superfamily
Vc3S01_RS20450	COG1418	mRNA catabolic process
Vc3S01_RS20465	COG0402	S-adenosylhomocysteine deaminase activity
Vc3S01_RS20470	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
Vc3S01_RS20475	COG2239	Acts as a magnesium transporter
Vc3S01_RS20480	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
Vc3S01_RS20485	COG1566	PFAM secretion protein HlyD family protein
Vc3S01_RS20490	COG3941	tape measure
Vc3S01_RS20505	COG4397	Mu-like prophage major head subunit gpT
Vc3S01_RS20590	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS20595	COG2205	protein histidine kinase activity
Vc3S01_RS20605	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Vc3S01_RS20610	COG0531	amino acid
Vc3S01_RS20625	COG0583	DNA-binding transcription factor activity
Vc3S01_RS20650	COG5002	protein histidine kinase activity
Vc3S01_RS20650	COG0784	Response regulator, receiver
Vc3S01_RS20650	COG2205	protein histidine kinase activity
Vc3S01_RS20655	COG0673	inositol 2-dehydrogenase activity
Vc3S01_RS20665	COG3423	Transcriptional regulator
Vc3S01_RS20670	COG2801	Transposase and inactivated derivatives
Vc3S01_RS20675	COG2842	Transposition protein
Vc3S01_RS20790	COG0640	Transcriptional regulator
Vc3S01_RS20805	COG4373	Mu-like prophage FluMu protein gp28
Vc3S01_RS20810	COG4383	Mu-like prophage protein gp29
Vc3S01_RS20825	COG4397	Mu-like prophage major head subunit gpT
Vc3S01_RS20845	COG4387	Mu-like prophage protein GP36
Vc3S01_RS20865	COG4386	tail sheath protein
Vc3S01_RS20875	COG4518	Phage tail assembly chaperone proteins, E, or 41 or 14
Vc3S01_RS20905	COG3299	homolog of phage Mu protein gp47
Vc3S01_RS20910	COG3778	Protein conserved in bacteria
Vc3S01_RS21000	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Vc3S01_RS21005	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Vc3S01_RS21015	COG1280	lysine exporter protein (LysE YggA)
Vc3S01_RS21025	COG0183	Belongs to the thiolase family
Vc3S01_RS21045	COG3005	denitrification pathway
Vc3S01_RS21065	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Vc3S01_RS21070	COG3850	Histidine kinase
Vc3S01_RS21075	COG2197	response regulator
Vc3S01_RS21090	COG2195	Cleaves the N-terminal amino acid of tripeptides
Vc3S01_RS21115	COG0840	transmembrane signaling receptor activity
Vc3S01_RS21125	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Vc3S01_RS21130	COG0545	Peptidyl-prolyl cis-trans isomerase
Vc3S01_RS21160	COG1278	Cold shock
Vc3S01_RS21165	COG3036	rescue of stalled ribosome
Vc3S01_RS21175	COG2199	diguanylate cyclase activity
Vc3S01_RS21195	COG1136	(ABC) transporter
Vc3S01_RS21205	COG0840	transmembrane signaling receptor activity
Vc3S01_RS21210	COG0783	Belongs to the Dps family
Vc3S01_RS21220	COG1619	proteins homologs of microcin C7 resistance protein MccF
Vc3S01_RS21225	COG2133	pyrroloquinoline quinone binding
Vc3S01_RS21230	COG1454	alcohol dehydrogenase
Vc3S01_RS21235	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
Vc3S01_RS21255	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Vc3S01_RS21265	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
Vc3S01_RS21270	COG3186	Phenylalanine-4-hydroxylase
Vc3S01_RS21300	COG3530	Putative quorum-sensing-regulated virulence factor
Vc3S01_RS21335	COG5002	protein histidine kinase activity
Vc3S01_RS21335	COG3447	MASE1 domain protein
Vc3S01_RS21335	COG5001	Diguanylate cyclase
Vc3S01_RS21340	COG0513	Belongs to the DEAD box helicase family
Vc3S01_RS21360	COG2200	EAL domain
Vc3S01_RS21365	COG1119	ATPase activity
Vc3S01_RS21410	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
Vc3S01_RS21425	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
Vc3S01_RS21430	COG0513	Belongs to the DEAD box helicase family
Vc3S01_RS21440	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
Vc3S01_RS21510	COG1609	Transcriptional regulator
Vc3S01_RS21520	COG2182	Extracellular solute-binding protein
Vc3S01_RS21525	COG1175	transmembrane transport
Vc3S01_RS21530	COG3833	ABC-type maltose transport systems, permease component
Vc3S01_RS21540	COG1874	Beta-galactosidase
Vc3S01_RS21545	COG4580	involved in the transport of maltose and maltodextrins
Vc3S01_RS21550	COG0840	transmembrane signaling receptor activity
Vc3S01_RS21555	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Vc3S01_RS21605	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
Vc3S01_RS21610	COG3550	peptidyl-serine autophosphorylation
Vc3S01_RS21630	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
Vc3S01_RS21640	COG1752	Esterase of the alpha-beta hydrolase superfamily
Vc3S01_RS21660	COG3278	Belongs to the heme-copper respiratory oxidase family
Vc3S01_RS21700	COG1024	Enoyl-CoA hydratase
Vc3S01_RS21705	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
Vc3S01_RS21710	COG1960	acyl-CoA dehydrogenase activity
Vc3S01_RS21720	COG0183	Belongs to the thiolase family
Vc3S01_RS21735	COG1024	Enoyl-CoA hydratase
Vc3S01_RS21740	COG1024	Enoyl-CoA hydratase
Vc3S01_RS21750	COG1028	Short-chain dehydrogenase reductase Sdr
Vc3S01_RS21755	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
Vc3S01_RS21760	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Vc3S01_RS21765	COG1845	cytochrome c oxidase, subunit III
Vc3S01_RS21770	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
Vc3S01_RS21780	COG1902	pentaerythritol trinitrate reductase activity
Vc3S01_RS21780	COG0446	pyridine nucleotide-disulphide oxidoreductase
Vc3S01_RS21795	COG1012	belongs to the aldehyde dehydrogenase family
Vc3S01_RS21805	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
Vc3S01_RS21860	COG1126	abc transporter atp-binding protein
Vc3S01_RS21865	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Vc3S01_RS21870	COG4215	(ABC) transporter
Vc3S01_RS21875	COG4160	amino acid transport
Vc3S01_RS21900	COG2200	EAL domain
Vc3S01_RS21945	COG0443	Heat shock 70 kDa protein
Vc3S01_RS21985	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS22000	COG1785	Belongs to the alkaline phosphatase family
Vc3S01_RS22030	COG0814	amino acid
Vc3S01_RS22035	COG5001	Diguanylate cyclase
Vc3S01_RS22035	COG5002	protein histidine kinase activity
Vc3S01_RS22045	COG0243	molybdopterin cofactor binding
Vc3S01_RS22050	COG1648	precorrin-2 dehydrogenase activity
Vc3S01_RS22050	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
Vc3S01_RS22075	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Vc3S01_RS22075	COG1116	anion transmembrane transporter activity
Vc3S01_RS22080	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Vc3S01_RS22085	COG1116	anion transmembrane transporter activity
Vc3S01_RS22090	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Vc3S01_RS22090	COG2146	nitrite reductase [NAD(P)H] activity
Vc3S01_RS22125	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
Vc3S01_RS22135	COG1902	pentaerythritol trinitrate reductase activity
Vc3S01_RS22145	COG0739	heme binding
Vc3S01_RS22175	COG0628	permease
Vc3S01_RS22260	COG2814	Major facilitator Superfamily
Vc3S01_RS22305	COG1132	(ABC) transporter
Vc3S01_RS22315	COG5640	endopeptidase activity
Vc3S01_RS22330	COG0583	DNA-binding transcription factor activity
Vc3S01_RS22355	COG3119	arylsulfatase activity
Vc3S01_RS22360	COG3119	arylsulfatase activity
Vc3S01_RS22365	COG0641	radical SAM
Vc3S01_RS22385	COG4977	sequence-specific DNA binding
Vc3S01_RS22465	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
Vc3S01_RS22475	COG0404	The glycine cleavage system catalyzes the degradation of glycine
Vc3S01_RS22485	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Vc3S01_RS22490	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Vc3S01_RS22505	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Vc3S01_RS22505	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
Vc3S01_RS22505	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Vc3S01_RS22510	COG1105	Belongs to the carbohydrate kinase PfkB family
Vc3S01_RS22515	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
Vc3S01_RS22515	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
Vc3S01_RS22520	COG1609	Transcriptional regulator
Vc3S01_RS22535	COG2199	diguanylate cyclase activity
Vc3S01_RS22535	COG2203	Gaf domain
Vc3S01_RS22535	COG2200	EAL domain
Vc3S01_RS22540	COG0765	amino acid transport
Vc3S01_RS22545	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Vc3S01_RS22550	COG0765	amino acid transport
Vc3S01_RS22555	COG1126	abc transporter atp-binding protein
Vc3S01_RS22565	COG1979	alcohol dehydrogenase
Vc3S01_RS22570	COG2207	Transcriptional regulator
Vc3S01_RS22585	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
Vc3S01_RS22595	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Vc3S01_RS22610	COG0784	Response regulator, receiver
Vc3S01_RS22610	COG3437	response regulator, receiver
Vc3S01_RS22615	COG0546	phosphoglycolate phosphatase activity
Vc3S01_RS22630	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
Vc3S01_RS22635	COG0513	Belongs to the DEAD box helicase family
Vc3S01_RS22640	COG4943	cyclic-guanylate-specific phosphodiesterase activity
Vc3S01_RS22655	COG3038	cytochrome b561
Vc3S01_RS22665	COG2116	formate transmembrane transporter activity
Vc3S01_RS22675	COG0583	DNA-binding transcription factor activity
Vc3S01_RS22685	COG3593	DNA synthesis involved in DNA repair
Vc3S01_RS22690	COG0737	Belongs to the 5'-nucleotidase family
Vc3S01_RS22695	COG0861	Integral membrane protein TerC family
Vc3S01_RS22705	COG0646	methionine synthase
Vc3S01_RS22705	COG1410	methionine synthase
Vc3S01_RS22720	COG2267	carboxylic ester hydrolase activity
Vc3S01_RS22725	COG2067	long-chain fatty acid transport protein
Vc3S01_RS22735	COG0501	Belongs to the peptidase M48B family
Vc3S01_RS22740	COG2050	protein possibly involved in aromatic compounds catabolism
Vc3S01_RS22775	COG0484	heat shock protein binding
Vc3S01_RS22785	COG5001	Diguanylate cyclase
Vc3S01_RS22785	COG3300	MHYT domain
Vc3S01_RS22790	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
Vc3S01_RS22800	COG4181	ATPase activity
Vc3S01_RS22805	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
Vc3S01_RS22815	COG1984	allophanate hydrolase subunit 2
Vc3S01_RS22820	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
Vc3S01_RS22835	COG5002	protein histidine kinase activity
Vc3S01_RS22835	COG3447	MASE1 domain protein
Vc3S01_RS22835	COG5001	Diguanylate cyclase
Vc3S01_RS22840	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Vc3S01_RS22855	COG0583	DNA-binding transcription factor activity
Vc3S01_RS22860	COG0045	succinate-CoA ligase (ADP-forming) activity
Vc3S01_RS22860	COG1042	CoA-binding domain protein
Vc3S01_RS22860	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Vc3S01_RS22880	COG0023	Translation Initiation Factor
Vc3S01_RS22885	COG2801	Transposase and inactivated derivatives
Vc3S01_RS22910	COG3140	Belongs to the UPF0181 family
Vc3S01_RS22935	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
Vc3S01_RS22940	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
Vc3S01_RS22960	COG3706	GGDEF domain
Vc3S01_RS22960	COG4251	negative regulation of phosphorylation
Vc3S01_RS22960	COG5001	Diguanylate cyclase
Vc3S01_RS22960	COG2203	Gaf domain
Vc3S01_RS22970	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
Vc3S01_RS22975	COG4149	molybdate abc transporter
Vc3S01_RS22980	COG0725	ABC transporter, periplasmic molybdate-binding protein
Vc3S01_RS22990	COG3111	PFAM Bacterial OB fold (BOF) protein
Vc3S01_RS23020	COG0602	queuosine metabolic process
Vc3S01_RS23025	COG1328	CTP reductase activity
Vc3S01_RS23090	COG2197	response regulator
Vc3S01_RS23095	COG3851	Histidine kinase
Vc3S01_RS23100	COG2271	Major facilitator Superfamily
Vc3S01_RS23105	COG1482	cell wall glycoprotein biosynthetic process
Vc3S01_RS23115	COG0628	permease
Vc3S01_RS23125	COG1566	PFAM secretion protein HlyD family protein
Vc3S01_RS23150	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Vc3S01_RS23155	COG3118	belongs to the thioredoxin family
Vc3S01_RS23165	COG3292	Two component regulator propeller
Vc3S01_RS23165	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS23165	COG2205	protein histidine kinase activity
Vc3S01_RS23170	COG0534	Mate efflux family protein
Vc3S01_RS23195	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
Vc3S01_RS23215	COG2116	formate transmembrane transporter activity
Vc3S01_RS23225	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Vc3S01_RS23235	COG2199	diguanylate cyclase activity
Vc3S01_RS23320	COG0277	FAD linked oxidase domain protein
Vc3S01_RS23325	COG0583	DNA-binding transcription factor activity
Vc3S01_RS23340	COG2425	protein containing a von Willebrand factor type A (vWA) domain
Vc3S01_RS23355	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
Vc3S01_RS23365	COG1288	antiporter activity
Vc3S01_RS23375	COG2814	Major facilitator Superfamily
Vc3S01_RS23385	COG3040	lipid binding
Vc3S01_RS23415	COG3469	chitinase activity
Vc3S01_RS23425	COG0419	ATPase involved in DNA repair
Vc3S01_RS23430	COG0420	3'-5' exonuclease activity
Vc3S01_RS23450	COG3209	COG3209 Rhs family protein
Vc3S01_RS23520	COG0631	protein serine/threonine phosphatase activity
Vc3S01_RS23555	COG2815	serine threonine protein kinase
Vc3S01_RS23555	COG0515	serine threonine protein kinase
Vc3S01_RS23585	COG0346	lactoylglutathione lyase activity
Vc3S01_RS23590	COG1902	pentaerythritol trinitrate reductase activity
Vc3S01_RS23600	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
Vc3S01_RS23600	COG2755	lipolytic protein G-D-S-L family
Vc3S01_RS23610	COG5642	Protein of unknown function (DUF2384)
Vc3S01_RS23625	COG1234	tRNA 3'-trailer cleavage
Vc3S01_RS23685	COG0671	phosphoesterase, PA-phosphatase related
Vc3S01_RS23700	COG2962	Rard protein
Vc3S01_RS23710	COG2165	general secretion pathway protein
Vc3S01_RS23715	COG0784	Response regulator, receiver
Vc3S01_RS23715	COG0835	chemotaxis
Vc3S01_RS23725	COG0778	Nitroreductase
Vc3S01_RS23730	COG2197	response regulator
Vc3S01_RS23740	COG3706	GGDEF domain
Vc3S01_RS23745	COG2197	response regulator
Vc3S01_RS23750	COG3300	MHYT domain
Vc3S01_RS23750	COG5001	Diguanylate cyclase
Vc3S01_RS23755	COG2205	protein histidine kinase activity
Vc3S01_RS23755	COG0784	Response regulator, receiver
Vc3S01_RS23770	COG4771	TonB-dependent receptor
Vc3S01_RS23840	COG1522	sequence-specific DNA binding
Vc3S01_RS23875	COG0515	serine threonine protein kinase
Vc3S01_RS23900	COG3501	Rhs element vgr protein
Vc3S01_RS23950	COG0739	heme binding
Vc3S01_RS23955	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
Vc3S01_RS23985	COG3069	C4-dicarboxylate transmembrane transporter activity
Vc3S01_RS23990	COG1704	LemA family
Vc3S01_RS23995	COG0501	Belongs to the peptidase M48B family
Vc3S01_RS24020	COG0641	radical SAM
Vc3S01_RS24040	COG3111	PFAM Bacterial OB fold (BOF) protein
Vc3S01_RS24045	COG1597	lipid kinase activity
Vc3S01_RS24050	COG0583	DNA-binding transcription factor activity
Vc3S01_RS24060	COG0355	proton-transporting ATP synthase activity, rotational mechanism
Vc3S01_RS24070	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
Vc3S01_RS24130	COG0714	Associated with various cellular activities
Vc3S01_RS24135	COG3063	Type IV pilus biogenesis stability protein PilW
Vc3S01_RS24140	COG3119	arylsulfatase activity
Vc3S01_RS24145	COG3119	arylsulfatase activity
Vc3S01_RS24175	COG2198	Histidine kinase
Vc3S01_RS24175	COG0784	Response regulator, receiver
Vc3S01_RS24175	COG2205	protein histidine kinase activity
Vc3S01_RS24180	COG1879	ABC-type sugar transport system periplasmic component
Vc3S01_RS24190	COG0210	DNA helicase
Vc3S01_RS24195	COG1289	transmembrane transporter activity
Vc3S01_RS24220	COG0789	Transcriptional regulator
Vc3S01_RS24225	COG4604	ABC transporter, ATP-binding protein
Vc3S01_RS24230	COG4605	iron ion homeostasis
Vc3S01_RS24235	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Vc3S01_RS24240	COG4607	ABC-type enterochelin transport system periplasmic component
Vc3S01_RS24255	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
Vc3S01_RS24270	COG1609	Transcriptional regulator
Vc3S01_RS24275	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Vc3S01_RS24280	COG1879	ABC-type sugar transport system periplasmic component
Vc3S01_RS24285	COG1172	Belongs to the binding-protein-dependent transport system permease family
Vc3S01_RS24290	COG1129	ABC transporter
Vc3S01_RS24300	COG5001	Diguanylate cyclase
Vc3S01_RS24305	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
Vc3S01_RS24315	COG1794	racemase activity, acting on amino acids and derivatives
Vc3S01_RS24320	COG1051	belongs to the nudix hydrolase family
Vc3S01_RS24345	COG0586	Pfam SNARE associated Golgi protein
Vc3S01_RS24390	COG2205	protein histidine kinase activity
Vc3S01_RS24390	COG0784	Response regulator, receiver
Vc3S01_RS24405	COG5001	Diguanylate cyclase
Vc3S01_RS24405	COG4251	negative regulation of phosphorylation
Vc3S01_RS24405	COG3706	GGDEF domain
Vc3S01_RS24405	COG2203	Gaf domain
Vc3S01_RS24420	COG0330	HflC and HflK could
Vc3S01_RS24430	COG4175	Glycine betaine
Vc3S01_RS24430	COG0517	IMP dehydrogenase activity
Vc3S01_RS24435	COG4176	ABC-type proline glycine betaine transport system permease component
Vc3S01_RS24460	COG3706	GGDEF domain
Vc3S01_RS24470	COG0402	S-adenosylhomocysteine deaminase activity
Vc3S01_RS24495	COG2885	chlorophyll binding
Vc3S01_RS24535	COG0455	bacterial-type flagellum organization
Vc3S01_RS24545	COG4964	Belongs to the GSP D family
Vc3S01_RS24565	COG0583	DNA-binding transcription factor activity
Vc3S01_RS24570	COG1073	alpha beta
Vc3S01_RS24590	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
Vc3S01_RS24590	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
Vc3S01_RS24605	COG4989	oxidoreductase activity
Vc3S01_RS24630	COG1914	H( )-stimulated, divalent metal cation uptake system
Vc3S01_RS24650	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
Vc3S01_RS24705	COG2897	thiosulfate sulfurtransferase activity
Vc3S01_RS24740	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
Vc3S01_RS24745	COG0840	transmembrane signaling receptor activity
Vc3S01_RS24750	COG2814	Major facilitator Superfamily
Vc3S01_RS24755	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
Vc3S01_RS24770	COG1612	heme a metabolic process
Vc3S01_RS24795	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
Vc3S01_RS24800	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
Vc3S01_RS24810	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Vc3S01_RS24820	COG1280	lysine exporter protein (LysE YggA)
Vc3S01_RS24840	COG0179	Fumarylacetoacetate (FAA) hydrolase
Vc3S01_RS24855	COG0697	spore germination
Vc3S01_RS24875	COG2814	Major facilitator Superfamily
Vc3S01_RS24880	COG0583	DNA-binding transcription factor activity
Vc3S01_RS24885	COG5001	Diguanylate cyclase
Vc3S01_RS24890	COG0739	heme binding
Vc3S01_RS24910	COG3314	Sporulation integral membrane protein YlbJ
Vc3S01_RS24925	COG0814	amino acid
Vc3S01_RS24945	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
Vc3S01_RS24950	COG1072	(Pantothenic acid kinase))
Vc3S01_RS24960	COG1063	alcohol dehydrogenase
Vc3S01_RS24965	COG2213	PTS system mannitol-specific
Vc3S01_RS24970	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Vc3S01_RS24975	COG0747	negative chemotaxis
Vc3S01_RS24985	COG1733	regulation of RNA biosynthetic process
Vc3S01_RS25000	COG0798	PFAM Bile acid sodium symporter
Vc3S01_RS25015	COG1881	PFAM PEBP family protein
Vc3S01_RS25020	COG0251	oxidation-reduction process
Vc3S01_RS25025	COG2706	6-phosphogluconolactonase activity
Vc3S01_RS25035	COG0800	Aldolase
Vc3S01_RS25040	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Vc3S01_RS25045	COG4145	pantothenate transmembrane transporter activity
Vc3S01_RS25055	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
Vc3S01_RS25080	COG1131	(ABC) transporter
Vc3S01_RS25085	COG0842	Transport permease protein
Vc3S01_RS25105	COG3383	formate dehydrogenase (NAD+) activity
Vc3S01_RS25125	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Vc3S01_RS25170	COG0494	nUDIX hydrolase
Vc3S01_RS25185	COG1858	cytochrome C peroxidase
Vc3S01_RS25195	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Vc3S01_RS25205	COG2067	long-chain fatty acid transport protein
Vc3S01_RS25215	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Vc3S01_RS25225	COG1505	serine-type exopeptidase activity
Vc3S01_RS25240	COG0589	response to stress
Vc3S01_RS25250	COG0584	glycerophosphoryl diester phosphodiesterase
Vc3S01_RS25260	COG1175	transmembrane transport
Vc3S01_RS25265	COG0395	ABC-type sugar transport system, permease component
Vc3S01_RS25270	COG3842	ATPase activity
Vc3S01_RS25295	COG0523	cobalamin synthesis protein
Vc3S01_RS25305	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
Vc3S01_RS25315	COG4667	esterase of the alpha-beta hydrolase superfamily
Vc3S01_RS25320	COG1741	Belongs to the pirin family
Vc3S01_RS25325	COG1278	Cold shock
Vc3S01_RS25340	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
Vc3S01_RS25370	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Vc3S01_RS25380	COG1686	Belongs to the peptidase S11 family
Vc3S01_RS25385	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
Vc3S01_RS25390	COG0625	glutathione transferase activity
Vc3S01_RS25400	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
Vc3S01_RS25445	COG1028	Short-chain dehydrogenase reductase Sdr
Vc3S01_RS25470	COG3746	phosphate-selective porin O and P
Vc3S01_RS25495	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Vc3S01_RS25540	COG0513	Belongs to the DEAD box helicase family
Vc3S01_RS25550	COG0583	DNA-binding transcription factor activity
Vc3S01_RS25570	COG1902	pentaerythritol trinitrate reductase activity
Vc3S01_RS25580	COG3853	Toxic anion resistance protein (TelA)
Vc3S01_RS25590	COG2255	four-way junction helicase activity
Vc3S01_RS25605	COG3122	Protein conserved in bacteria
Vc3S01_RS25610	COG2321	neutral zinc metallopeptidase
Vc3S01_RS25620	COG0583	DNA-binding transcription factor activity
Vc3S01_RS25625	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
Vc3S01_RS25640	COG0252	asparaginase activity
Vc3S01_RS25650	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Vc3S01_RS25650	COG0574	Belongs to the PEP-utilizing enzyme family
Vc3S01_RS25660	COG2197	response regulator
Vc3S01_RS25665	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
Vc3S01_RS25700	COG0583	DNA-binding transcription factor activity
Vc3S01_RS25705	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Vc3S01_RS25715	COG1538	Outer membrane efflux protein
Vc3S01_RS25720	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
Vc3S01_RS25725	COG0786	glutamate:sodium symporter activity
Vc3S01_RS25745	COG2197	response regulator
Vc3S01_RS25755	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
Vc3S01_RS25760	COG0318	PFAM AMP-dependent synthetase and ligase
Vc3S01_RS25830	COG4964	Belongs to the GSP D family
Vc3S01_RS25890	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Vc3S01_RS25900	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Vc3S01_RS25940	COG4948	Mandelate Racemase Muconate Lactonizing
Vc3S01_RS25970	COG1342	Belongs to the UPF0251 family
Vc3S01_RS25980	COG4176	ABC-type proline glycine betaine transport system permease component
Vc3S01_RS25985	COG4175	Glycine betaine
Vc3S01_RS25985	COG3448	diguanylate cyclase activity
Vc3S01_RS26005	COG0589	response to stress
Vc3S01_RS26010	COG0583	DNA-binding transcription factor activity
Vc3S01_RS26020	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
Vc3S01_RS26055	COG1335	isochorismatase
Vc3S01_RS26090	COG1349	DNA-binding transcription factor activity
Vc3S01_RS26095	COG0346	lactoylglutathione lyase activity
Vc3S01_RS26100	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Vc3S01_RS26100	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Vc3S01_RS26115	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Vc3S01_RS26120	COG3537	Alpha-1,2-mannosidase
Vc3S01_RS26125	COG3537	Alpha-1,2-mannosidase
Vc3S01_RS26135	COG3537	Alpha-1,2-mannosidase
Vc3S01_RS26140	COG3537	Alpha-1,2-mannosidase
Vc3S01_RS26145	COG0737	Belongs to the 5'-nucleotidase family
Vc3S01_RS26175	COG1280	lysine exporter protein (LysE YggA)
Vc3S01_RS26180	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
Vc3S01_RS26190	COG0583	DNA-binding transcription factor activity
Vc3S01_RS26205	COG4628	conserved protein (DUF2132)
Vc3S01_RS26210	COG0488	(ABC) transporter
Vc3S01_RS26225	COG0346	lactoylglutathione lyase activity
Vc3S01_RS26230	COG0384	phenazine biosynthesis protein PhzF
Vc3S01_RS26245	COG3220	belongs to the UPF0276 family
Vc3S01_RS26260	COG1271	oxidase subunit
Vc3S01_RS26265	COG1294	oxidase, subunit
Vc3S01_RS26275	COG0251	oxidation-reduction process
Vc3S01_RS26315	COG1882	Formate acetyltransferase
Vc3S01_RS26320	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Vc3S01_RS26325	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
Vc3S01_RS26340	COG2205	protein histidine kinase activity
Vc3S01_RS26345	COG0745	RESPONSE REGULATOR receiver
Vc3S01_RS26355	COG0454	-acetyltransferase
Vc3S01_RS26365	COG2814	Major facilitator Superfamily
Vc3S01_RS26375	COG2988	succinylglutamate desuccinylase activity
Vc3S01_RS26415	COG0628	permease
Vc3S01_RS26420	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
Vc3S01_RS26435	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
Vc3S01_RS26445	COG4628	conserved protein (DUF2132)
Vc3S01_RS26450	COG0583	DNA-binding transcription factor activity
Vc3S01_RS26460	COG1686	Belongs to the peptidase S11 family
Vc3S01_RS26485	COG0415	Belongs to the DNA photolyase family
Vc3S01_RS26490	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
Vc3S01_RS26500	COG4667	esterase of the alpha-beta hydrolase superfamily
Vc3S01_RS26520	COG1596	polysaccharide export
Vc3S01_RS26525	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Vc3S01_RS26560	COG1301	dicarboxylic acid transport
Vc3S01_RS26570	COG3339	Conserved Protein
Vc3S01_RS26575	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Vc3S01_RS26580	COG0700	Nucleoside recognition
Vc3S01_RS26585	COG3366	ferrous iron transmembrane transporter activity
Vc3S01_RS26600	COG0366	Alpha amylase catalytic
Vc3S01_RS26605	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
Vc3S01_RS26610	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
Vc3S01_RS26615	COG1640	4-alpha-glucanotransferase
Vc3S01_RS26620	COG0058	SHG alpha-glucan phosphorylase activity
Vc3S01_RS26645	COG1999	signal sequence binding
Vc3S01_RS26660	COG1162	GTPase activity
Vc3S01_RS26665	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
Vc3S01_RS26670	COG0673	inositol 2-dehydrogenase activity
Vc3S01_RS26695	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Vc3S01_RS26700	COG0673	inositol 2-dehydrogenase activity
Vc3S01_RS26705	COG3962	Belongs to the TPP enzyme family
Vc3S01_RS26715	COG0477	Major facilitator Superfamily
Vc3S01_RS26715	COG2814	Major facilitator Superfamily
Vc3S01_RS26735	COG0183	Belongs to the thiolase family
Vc3S01_RS26740	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Vc3S01_RS26765	COG0531	amino acid
Vc3S01_RS26770	COG1982	Orn Lys Arg decarboxylase major
Vc3S01_RS26790	COG2356	endonuclease I
Vc3S01_RS26810	COG4580	involved in the transport of maltose and maltodextrins
Vc3S01_RS26820	COG2203	Gaf domain
Vc3S01_RS26820	COG2199	diguanylate cyclase activity
Vc3S01_RS26845	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Vc3S01_RS26855	COG1760	l-serine dehydratase
Vc3S01_RS26880	COG1609	Transcriptional regulator
Vc3S01_RS26890	COG2814	Major facilitator Superfamily
Vc3S01_RS26920	COG0739	heme binding
Vc3S01_RS26935	COG0800	Aldolase
Vc3S01_RS26940	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Vc3S01_RS26945	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Vc3S01_RS26945	COG2190	(PTS) system
Vc3S01_RS26945	COG1263	PTS System
Vc3S01_RS26955	COG2188	Transcriptional regulator
Vc3S01_RS26980	COG3121	Chaperone
Vc3S01_RS26985	COG3188	usher protein
Vc3S01_RS27010	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Vc3S01_RS27010	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
Vc3S01_RS27010	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Vc3S01_RS27020	COG0383	alpha-mannosidase activity
Vc3S01_RS27025	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
Vc3S01_RS27050	COG0612	Peptidase, M16
Vc3S01_RS27055	COG0840	transmembrane signaling receptor activity
Vc3S01_RS27065	COG0826	peptidase U32
Vc3S01_RS27090	COG0463	Glycosyl transferase, family 2
Vc3S01_RS27105	COG1335	isochorismatase
Vc3S01_RS27110	COG1136	(ABC) transporter
Vc3S01_RS27115	COG0577	efflux transmembrane transporter activity
Vc3S01_RS27150	COG1764	response to oxidative stress
Vc3S01_RS27155	COG1846	Transcriptional regulator
Vc3S01_RS27165	COG3634	alkyl hydroperoxide reductase activity
Vc3S01_RS27230	COG2610	gluconate transmembrane transporter activity
Vc3S01_RS27235	COG3622	Belongs to the hyi family
Vc3S01_RS27240	COG0235	Class ii aldolase
Vc3S01_RS27245	COG3395	kinase activity
Vc3S01_RS27250	COG2084	Dehydrogenase
Vc3S01_RS27255	COG1349	DNA-binding transcription factor activity
Vc3S01_RS27270	COG0583	DNA-binding transcription factor activity
Vc3S01_RS27275	COG1486	melibiose metabolic process
Vc3S01_RS27290	COG1522	sequence-specific DNA binding
Vc3S01_RS27295	COG0544	peptidyl-prolyl cis-trans isomerase activity
Vc3S01_RS27310	COG2258	MOSC domain
Vc3S01_RS27315	COG2153	protein acetylation
Vc3S01_RS27325	COG3713	MltA-interacting MipA family protein
Vc3S01_RS27330	COG0513	Belongs to the DEAD box helicase family
Vc3S01_RS27345	COG0583	DNA-binding transcription factor activity
Vc3S01_RS27350	COG1312	Catalyzes the dehydration of D-mannonate
Vc3S01_RS27355	COG2186	Transcriptional regulator
Vc3S01_RS27365	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
Vc3S01_RS27375	COG0246	Mannitol dehydrogenase
Vc3S01_RS27380	COG1904	glucuronate isomerase
Vc3S01_RS27385	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Vc3S01_RS27390	COG0800	Aldolase
Vc3S01_RS27430	COG1132	(ABC) transporter
Vc3S01_RS27570	COG4166	transmembrane transport
Vc3S01_RS27585	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
Vc3S01_RS27590	COG1263	PTS System
Vc3S01_RS27590	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
Vc3S01_RS27595	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
Vc3S01_RS27620	COG1444	tRNA N-acetyltransferase activity
Vc3S01_RS27650	COG1192	Involved in chromosome partitioning
Vc3S01_RS27675	COG0419	ATPase involved in DNA repair
Vc3S01_RS27960	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Vc3S01_RS27995	COG3504	Conjugal transfer protein
Vc3S01_RS28010	COG4962	Type ii secretion system protein e
Vc3S01_RS28020	COG3451	type IV secretory pathway VirB4
Vc3S01_RS28025	COG5268	conjugation
Vc3S01_RS28065	COG0517	IMP dehydrogenase activity
Vc3S01_RS28070	COG4974	Belongs to the 'phage' integrase family
Vc3S01_RS28165	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Vc3S01_RS28655	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Vc3S01_RS28860	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Vc3S01_RS28860	COG0551	DNA topoisomerase type I activity
Vc3S01_RS28900	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
Vc3S01_RS28990	COG3941	tape measure
Vc3S01_RS29005	COG4397	Mu-like prophage major head subunit gpT
Vc3S01_RS29140	COG4943	cyclic-guanylate-specific phosphodiesterase activity
Vc3S01_RS29255	COG2358	TRAP transporter, solute receptor (TAXI family
Vc3S01_RS29280	COG3015	lipoprotein NlpE involved in copper resistance
Vc3S01_RS29385	COG2801	Transposase and inactivated derivatives
Vc3S01_RS29410	COG0732	type I restriction modification DNA specificity domain
Vc3S01_RS29415	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
Vc3S01_RS29465	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
Vc3S01_RS29475	COG2801	Transposase and inactivated derivatives
Vc3S01_RS29560	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Vc3S01_RS29585	COG3504	Conjugal transfer protein
Vc3S01_RS29590	COG3736	Type IV secretory pathway, component VirB8
Vc3S01_RS29610	COG3451	type IV secretory pathway VirB4
Vc3S01_RS29650	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
Vc3S01_RS29755	COG2261	transglycosylase associated protein
Vc3S01_RS29845	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
Vc3S01_RS29890	COG1192	Involved in chromosome partitioning
Vc3S01_RS29950	COG2314	TM2 domain
Vc3S01_RS29995	COG0484	heat shock protein binding
Vc3S01_RS30240	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Vc3S01_RS30275	COG2948	multi-organism process
Vc3S01_RS30285	COG3736	Type IV secretory pathway, component VirB8
Vc3S01_RS30300	COG3451	type IV secretory pathway VirB4
Vc3S01_RS30330	COG0629	single-stranded DNA binding
Vc3S01_RS30335	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue