AP033_RS00015 SM00100 Cyclic nucleotide-monophosphate binding domain AP033_RS00030 SM00354 helix_turn _helix lactose operon repressor AP033_RS00050 SM00382 ATPases associated with a variety of cellular activities AP033_RS00105 SM00382 ATPases associated with a variety of cellular activities AP033_RS00110 SM00382 ATPases associated with a variety of cellular activities AP033_RS00110 SM01086 C-terminal, D2-small domain, of ClpB protein AP033_RS00185 SM00052 Putative diguanylate phosphodiesterase AP033_RS00190 SM00450 Rhodanese Homology Domain AP033_RS00270 SM00422 helix_turn_helix, mercury resistance AP033_RS00285 SM00052 Putative diguanylate phosphodiesterase AP033_RS00285 SM00267 diguanylate cyclase AP033_RS00315 SM00267 diguanylate cyclase AP033_RS00320 SM00382 ATPases associated with a variety of cellular activities AP033_RS00340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS00340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS00370 SM00487 DEAD-like helicases superfamily AP033_RS00370 SM00490 helicase superfamily c-terminal domain AP033_RS00385 SM00257 Lysin motif AP033_RS00395 SM00422 helix_turn_helix, mercury resistance AP033_RS00420 SM00028 Tetratricopeptide repeats AP033_RS00425 SM00267 diguanylate cyclase AP033_RS00440 SM00245 tail specific protease AP033_RS00485 SM00014 Acid phosphatase homologues AP033_RS00505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS00505 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS00525 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AP033_RS00525 SM00495 Chitin-binding domain type 3 AP033_RS00525 SM00636 AP033_RS00525 AP033_RS00580 SM00642 Alpha-amylase domain AP033_RS00595 SM00421 helix_turn_helix, Lux Regulon AP033_RS00610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS00610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS00610 SM01049 AP033_RS00610 AP033_RS00650 SM00470 ParB-like nuclease domain AP033_RS00675 SM01236 AP033_RS00675 AP033_RS00680 SM00822 AP033_RS00680 AP033_RS00690 SM00448 cheY-homologous receiver domain AP033_RS00690 SM00862 Transcriptional regulatory protein, C terminal AP033_RS00695 SM00387 Histidine kinase-like ATPases AP033_RS00695 SM00388 His Kinase A (phosphoacceptor) domain AP033_RS00705 SM00382 ATPases associated with a variety of cellular activities AP033_RS00730 SM00448 cheY-homologous receiver domain AP033_RS00735 SM00073 Histidine Phosphotransfer domain AP033_RS00735 SM00260 Two component signalling adaptor domain AP033_RS00735 SM00387 Histidine kinase-like ATPases AP033_RS00735 SM01231 AP033_RS00735 AP033_RS00740 SM00260 Two component signalling adaptor domain AP033_RS00745 SM00260 Two component signalling adaptor domain AP033_RS00750 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS00750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS00755 SM00138 Methyltransferase, chemotaxis proteins AP033_RS00765 SM00448 cheY-homologous receiver domain AP033_RS00770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS00780 SM00331 Sigma factor PP2C-like phosphatases AP033_RS00780 SM00448 cheY-homologous receiver domain AP033_RS00790 SM00382 ATPases associated with a variety of cellular activities AP033_RS00795 SM00052 Putative diguanylate phosphodiesterase AP033_RS00795 SM00267 diguanylate cyclase AP033_RS00815 SM00421 helix_turn_helix, Lux Regulon AP033_RS00835 SM00342 helix_turn_helix, arabinose operon control protein AP033_RS00860 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS00860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS00865 SM00344 helix_turn_helix ASNC type AP033_RS00910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS00910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS00925 SM00342 helix_turn_helix, arabinose operon control protein AP033_RS00935 SM00450 Rhodanese Homology Domain AP033_RS00940 SM00347 helix_turn_helix multiple antibiotic resistance protein AP033_RS00965 SM00849 Metallo-beta-lactamase superfamily AP033_RS01015 SM00062 Bacterial periplasmic substrate-binding proteins AP033_RS01025 SM00382 ATPases associated with a variety of cellular activities AP033_RS01040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS01040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS01055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS01055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS01065 SM00642 Alpha-amylase domain AP033_RS01095 SM01154 AP033_RS01095 AP033_RS01115 SM00342 helix_turn_helix, arabinose operon control protein AP033_RS01115 SM01009 AlkA N-terminal domain AP033_RS01165 SM00347 helix_turn_helix multiple antibiotic resistance protein AP033_RS01185 SM00342 helix_turn_helix, arabinose operon control protein AP033_RS01210 SM00382 ATPases associated with a variety of cellular activities AP033_RS01235 SM00487 DEAD-like helicases superfamily AP033_RS01235 SM00490 helicase superfamily c-terminal domain AP033_RS01285 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS01290 SM00062 Bacterial periplasmic substrate-binding proteins AP033_RS01295 SM00382 ATPases associated with a variety of cellular activities AP033_RS01310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS01310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS01345 SM00267 diguanylate cyclase AP033_RS01370 SM00267 diguanylate cyclase AP033_RS01370 SM01079 AP033_RS01370 AP033_RS01380 SM00530 Helix-turn-helix XRE-family like proteins AP033_RS01390 SM00267 diguanylate cyclase AP033_RS01395 SM00347 helix_turn_helix multiple antibiotic resistance protein AP033_RS01400 SM00260 Two component signalling adaptor domain AP033_RS01400 SM00448 cheY-homologous receiver domain AP033_RS01410 SM00421 helix_turn_helix, Lux Regulon AP033_RS01420 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AP033_RS01435 SM00382 ATPases associated with a variety of cellular activities AP033_RS01465 SM00420 helix_turn_helix, Deoxyribose operon repressor AP033_RS01465 SM01134 AP033_RS01465 AP033_RS01470 SM00091 PAS domain AP033_RS01470 SM00267 diguanylate cyclase AP033_RS01480 SM00342 helix_turn_helix, arabinose operon control protein AP033_RS01495 SM00357 Cold shock protein domain AP033_RS01500 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_RS01525 SM00342 helix_turn_helix, arabinose operon control protein AP033_RS01540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS01540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS01570 SM00382 ATPases associated with a variety of cellular activities AP033_RS01600 SM00729 Elongator protein 3, MiaB family, Radical SAM AP033_RS01615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS01615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS01645 SM00849 Metallo-beta-lactamase superfamily AP033_RS01655 SM01350 AP033_RS01655 AP033_RS01670 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_RS01675 SM00481 DNA polymerase alpha chain like domain AP033_RS01715 SM00829 Enoylreductase AP033_RS01750 SM00530 Helix-turn-helix XRE-family like proteins AP033_RS01755 SM00530 Helix-turn-helix XRE-family like proteins AP033_RS01790 SM00357 Cold shock protein domain AP033_RS01820 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AP033_RS01830 SM00226 Low molecular weight phosphatase family AP033_RS01950 SM01007 Class II Aldolase and Adducin N-terminal domain AP033_RS01965 SM00420 helix_turn_helix, Deoxyribose operon repressor AP033_RS01965 SM01134 AP033_RS01965 AP033_RS02000 SM00345 helix_turn_helix gluconate operon transcriptional repressor AP033_RS02030 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AP033_RS02030 SM00091 PAS domain AP033_RS02030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS02050 SM00642 Alpha-amylase domain AP033_RS02070 SM00382 ATPases associated with a variety of cellular activities AP033_RS02090 SM00387 Histidine kinase-like ATPases AP033_RS02095 SM00448 cheY-homologous receiver domain AP033_RS02095 SM00850 LytTr DNA-binding domain AP033_RS02110 SM00267 diguanylate cyclase AP033_RS02130 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AP033_RS02150 SM01091 Transporter associated domain AP033_RS02155 SM01266 AP033_RS02155 AP033_RS02235 SM00883 Chaperonin 10 Kd subunit AP033_RS02240 SM00924 MgtE intracellular N domain AP033_RS02295 SM00357 Cold shock protein domain AP033_RS02295 SM00955 AP033_RS02295 AP033_RS02300 SM00487 DEAD-like helicases superfamily AP033_RS02300 SM00490 helicase superfamily c-terminal domain AP033_RS02305 SM00020 Trypsin-like serine protease AP033_RS02340 SM00857 Resolvase, N terminal domain AP033_RS02415 SM00354 helix_turn _helix lactose operon repressor AP033_RS02430 SM00387 Histidine kinase-like ATPases AP033_RS02430 SM00448 cheY-homologous receiver domain AP033_RS02465 SM00890 Domain of unknown function AP033_RS02470 SM00387 Histidine kinase-like ATPases AP033_RS02470 SM00388 His Kinase A (phosphoacceptor) domain AP033_RS02475 SM00448 cheY-homologous receiver domain AP033_RS02475 SM00862 Transcriptional regulatory protein, C terminal AP033_RS02495 SM00052 Putative diguanylate phosphodiesterase AP033_RS02510 SM00867 YceI-like domain AP033_RS02515 SM00116 Domain in cystathionine beta-synthase and other proteins. AP033_RS02550 SM00782 PhnA Zinc-Ribbon AP033_RS02585 SM00062 Bacterial periplasmic substrate-binding proteins AP033_RS02585 SM00267 diguanylate cyclase AP033_RS02605 SM00267 diguanylate cyclase AP033_RS02620 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AP033_RS02620 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AP033_RS02630 SM00387 Histidine kinase-like ATPases AP033_RS02630 SM00388 His Kinase A (phosphoacceptor) domain AP033_RS02635 SM00448 cheY-homologous receiver domain AP033_RS02635 SM00862 Transcriptional regulatory protein, C terminal AP033_RS02675 SM00881 CoA binding domain AP033_RS02745 SM00382 ATPases associated with a variety of cellular activities AP033_RS02795 SM00345 helix_turn_helix gluconate operon transcriptional repressor AP033_RS02795 SM00866 AP033_RS02795 AP033_RS02805 SM00382 ATPases associated with a variety of cellular activities AP033_RS02870 SM00852 Probable molybdopterin binding domain AP033_RS02885 SM00450 Rhodanese Homology Domain AP033_RS02890 SM00636 AP033_RS02890 AP033_RS02910 SM00861 Transketolase, pyrimidine binding domain AP033_RS03005 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AP033_RS03015 SM00450 Rhodanese Homology Domain AP033_RS03025 SM00563 Phosphate acyltransferases AP033_RS03065 SM00354 helix_turn _helix lactose operon repressor AP033_RS03070 SM00640 Glycosyl hydrolases family 32 AP033_RS03085 SM00091 PAS domain AP033_RS03085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS03105 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS03105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS03145 SM00354 helix_turn _helix lactose operon repressor AP033_RS03150 SM00421 helix_turn_helix, Lux Regulon AP033_RS03150 SM00448 cheY-homologous receiver domain AP033_RS03155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS03155 SM00387 Histidine kinase-like ATPases AP033_RS03170 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AP033_RS03190 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_RS03195 SM00421 helix_turn_helix, Lux Regulon AP033_RS03195 SM00448 cheY-homologous receiver domain AP033_RS03200 SM00387 Histidine kinase-like ATPases AP033_RS03220 SM00382 ATPases associated with a variety of cellular activities AP033_RS03240 SM00822 AP033_RS03240 AP033_RS03265 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AP033_RS03265 SM00267 diguanylate cyclase AP033_RS03275 SM00495 Chitin-binding domain type 3 AP033_RS03275 SM00636 AP033_RS03275 AP033_RS03290 SM00448 cheY-homologous receiver domain AP033_RS03295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS03295 SM00387 Histidine kinase-like ATPases AP033_RS03295 SM00388 His Kinase A (phosphoacceptor) domain AP033_RS03315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS03315 SM00387 Histidine kinase-like ATPases AP033_RS03315 SM00388 His Kinase A (phosphoacceptor) domain AP033_RS03315 SM00448 cheY-homologous receiver domain AP033_RS03325 SM00851 MGS-like domain AP033_RS03360 SM00387 Histidine kinase-like ATPases AP033_RS03365 SM00989 AP033_RS03365 AP033_RS03385 SM00382 ATPases associated with a variety of cellular activities AP033_RS03445 SM00387 Histidine kinase-like ATPases AP033_RS03445 SM00388 His Kinase A (phosphoacceptor) domain AP033_RS03445 SM00448 cheY-homologous receiver domain AP033_RS03560 SM00062 Bacterial periplasmic substrate-binding proteins AP033_RS03560 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AP033_RS03565 SM00382 ATPases associated with a variety of cellular activities AP033_RS03575 SM00327 von Willebrand factor (vWF) type A domain AP033_RS03580 SM00382 ATPases associated with a variety of cellular activities AP033_RS03605 SM00487 DEAD-like helicases superfamily AP033_RS03605 SM00490 helicase superfamily c-terminal domain AP033_RS03625 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS03625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS03645 SM00796 Allophanate hydrolase subunit 1 AP033_RS03650 SM00797 Allophanate hydrolase subunit 2 AP033_RS03660 SM00984 UDP binding domain AP033_RS03670 SM00382 ATPases associated with a variety of cellular activities AP033_RS03685 SM00052 Putative diguanylate phosphodiesterase AP033_RS03685 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AP033_RS03685 SM00267 diguanylate cyclase AP033_RS03700 SM00271 DnaJ molecular chaperone homology domain AP033_RS03770 SM01321 AP033_RS03770 AP033_RS04030 SM00990 AP033_RS04030 AP033_RS04130 SM00530 Helix-turn-helix XRE-family like proteins AP033_RS04180 SM00871 Bacterial transcription activator, effector binding domain AP033_RS04205 SM01034 Sensors of blue-light using FAD AP033_RS04320 SM00360 RNA recognition motif AP033_RS04325 SM00360 RNA recognition motif AP033_RS04355 SM00360 RNA recognition motif AP033_RS04400 SM01034 Sensors of blue-light using FAD AP033_RS04420 SM00953 AP033_RS04420 AP033_RS04540 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AP033_RS04740 SM00530 Helix-turn-helix XRE-family like proteins AP033_RS04790 SM00530 Helix-turn-helix XRE-family like proteins AP033_RS04810 SM01321 AP033_RS04810 AP033_RS04815 SM01057 Eukaryotic-type carbonic anhydrase AP033_RS04830 SM00936 Penicillin-binding protein 5, C-terminal domain AP033_RS04840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS04840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS04850 SM00342 helix_turn_helix, arabinose operon control protein AP033_RS04860 SM00422 helix_turn_helix, mercury resistance AP033_RS04885 SM00387 Histidine kinase-like ATPases AP033_RS04885 SM00388 His Kinase A (phosphoacceptor) domain AP033_RS04890 SM00448 cheY-homologous receiver domain AP033_RS04890 SM00862 Transcriptional regulatory protein, C terminal AP033_RS04910 SM00642 Alpha-amylase domain AP033_RS04925 SM00420 helix_turn_helix, Deoxyribose operon repressor AP033_RS04925 SM01134 AP033_RS04925 AP033_RS04940 SM01007 Class II Aldolase and Adducin N-terminal domain AP033_RS04950 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AP033_RS04965 SM00448 cheY-homologous receiver domain AP033_RS04965 SM00862 Transcriptional regulatory protein, C terminal AP033_RS04970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS04970 SM00387 Histidine kinase-like ATPases AP033_RS04970 SM00388 His Kinase A (phosphoacceptor) domain AP033_RS05000 SM00342 helix_turn_helix, arabinose operon control protein AP033_RS05005 SM00382 ATPases associated with a variety of cellular activities AP033_RS05035 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AP033_RS05050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS05050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS05055 SM00458 Ricin-type beta-trefoil AP033_RS05065 SM00267 diguanylate cyclase AP033_RS05095 SM00387 Histidine kinase-like ATPases AP033_RS05100 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AP033_RS05120 SM00487 DEAD-like helicases superfamily AP033_RS05120 SM00490 helicase superfamily c-terminal domain AP033_RS05125 SM00974 AP033_RS05125 AP033_RS05130 SM01240 AP033_RS05130 AP033_RS05170 SM00448 cheY-homologous receiver domain AP033_RS05190 SM00357 Cold shock protein domain AP033_RS05200 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AP033_RS05200 SM00382 ATPases associated with a variety of cellular activities AP033_RS05230 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AP033_RS05230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AP033_RS05250 SM00327 von Willebrand factor (vWF) type A domain AP033_RS05255 SM00028 Tetratricopeptide repeats AP033_RS05270 SM00357 Cold shock protein domain AP033_RS05275 SM00267 diguanylate cyclase AP033_RS05380 SM00382 ATPases associated with a variety of cellular activities AP033_RS05380 SM00448 cheY-homologous receiver domain AP033_RS05385 SM00091 PAS domain AP033_RS05385 SM00387 Histidine kinase-like ATPases AP033_RS05385 SM00388 His Kinase A (phosphoacceptor) domain AP033_RS05390 SM00495 Chitin-binding domain type 3 AP033_RS05710 SM00267 diguanylate cyclase AP033_RS06240 SM00260 Two component signalling adaptor domain AP033_RS06240 SM00387 Histidine kinase-like ATPases AP033_RS06240 SM01231 AP033_RS06240 AP033_RS06995 SM00342 helix_turn_helix, arabinose operon control protein AP033_RS07475 SM00642 Alpha-amylase domain AP033_RS08300 SM00345 helix_turn_helix gluconate operon transcriptional repressor AP033_RS08820 SM00448 cheY-homologous receiver domain AP033_RS08975 SM00387 Histidine kinase-like ATPases AP033_RS09965 SM00388 His Kinase A (phosphoacceptor) domain AP033_RS10455 SM00382 ATPases associated with a variety of cellular activities AP033_RS12785 SM00116 Domain in cystathionine beta-synthase and other proteins. AP033_RS12810 SM00729 Elongator protein 3, MiaB family, Radical SAM AP033_RS13145 SM00267 diguanylate cyclase AP033_RS14740 SM00387 Histidine kinase-like ATPases AP033_RS15015 SM00487 DEAD-like helicases superfamily AP033_RS17665 SM00495 Chitin-binding domain type 3 AP033_RS18295 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AP033_RS18295 SM00493 AP033_RS18295