locus-tag class description LY388_RS00005 PF00270 DEAD/DEAH box helicase LY388_RS00005 PF00271 Helicase conserved C-terminal domain LY388_RS00010 PF17848 Acetyl-coA carboxylase zinc finger domain LY388_RS00010 PF01039 Carboxyl transferase domain LY388_RS00015 PF03466 LysR substrate binding domain LY388_RS00015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS00025 PF00478 IMP dehydrogenase / GMP reductase domain LY388_RS00035 PF07885 Ion channel LY388_RS00045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LY388_RS00045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LY388_RS00050 PF03853 YjeF-related protein N-terminus LY388_RS00050 PF01256 Carbohydrate kinase LY388_RS00060 PF00072 Response regulator receiver domain LY388_RS00075 PF03889 Alternative ribosome-rescue factor A LY388_RS00080 PF00313 'Cold-shock' DNA-binding domain LY388_RS00085 PF00042 Globin LY388_RS00085 PF00175 Oxidoreductase NAD-binding domain LY388_RS00085 PF00970 Oxidoreductase FAD-binding domain LY388_RS00090 PF00158 Sigma-54 interaction domain LY388_RS00090 PF01590 GAF domain LY388_RS00100 PF01546 Peptidase family M20/M25/M40 LY388_RS00100 PF07687 Peptidase dimerisation domain LY388_RS00105 PF01773 Na+ dependent nucleoside transporter N-terminus LY388_RS00105 PF07670 Nucleoside recognition LY388_RS00105 PF07662 Na+ dependent nucleoside transporter C-terminus LY388_RS00120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS00120 PF02743 Cache domain LY388_RS00120 PF00672 HAMP domain LY388_RS00125 PF17863 AAA lid domain LY388_RS00125 PF07726 ATPase family associated with various cellular activities (AAA) LY388_RS00130 PF01882 Protein of unknown function DUF58 LY388_RS00145 PF07584 Aerotolerance regulator N-terminal LY388_RS00145 PF13519 von Willebrand factor type A domain LY388_RS00160 PF00313 'Cold-shock' DNA-binding domain LY388_RS00165 PF08448 PAS fold LY388_RS00165 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS00165 PF00563 EAL domain LY388_RS00175 PF12843 Putative quorum-sensing-regulated virulence factor LY388_RS00180 PF01212 Beta-eliminating lyase LY388_RS00185 PF03222 Tryptophan/tyrosine permease family LY388_RS00190 PF00582 Universal stress protein family LY388_RS00200 PF13244 Domain of unknown function (DUF4040) LY388_RS00200 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LY388_RS00200 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LY388_RS00200 PF00361 Proton-conducting membrane transporter LY388_RS00205 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LY388_RS00210 PF00361 Proton-conducting membrane transporter LY388_RS00215 PF01899 Na+/H+ ion antiporter subunit LY388_RS00220 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LY388_RS00225 PF03334 Na+/H+ antiporter subunit LY388_RS00235 PF01327 Polypeptide deformylase LY388_RS00240 PF00041 Fibronectin type III domain LY388_RS00240 PF12561 ToxR activated gene A lipoprotein domain LY388_RS00245 PF01266 FAD dependent oxidoreductase LY388_RS00260 PF00158 Sigma-54 interaction domain LY388_RS00260 PF00072 Response regulator receiver domain LY388_RS00260 PF02954 Bacterial regulatory protein, Fis family LY388_RS00265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS00265 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS00265 PF02743 Cache domain LY388_RS00280 PF07690 Major Facilitator Superfamily LY388_RS00285 PF03009 Glycerophosphoryl diester phosphodiesterase family LY388_RS00295 PF01048 Phosphorylase superfamily LY388_RS00300 PF04973 Nicotinamide mononucleotide transporter LY388_RS00305 PF00356 Bacterial regulatory proteins, lacI family LY388_RS00310 PF00294 pfkB family carbohydrate kinase LY388_RS00315 PF13407 Periplasmic binding protein domain LY388_RS00320 PF02653 Branched-chain amino acid transport system / permease component LY388_RS00325 PF00005 ABC transporter LY388_RS00330 PF05025 RbsD / FucU transport protein family LY388_RS00345 PF01471 Putative peptidoglycan binding domain LY388_RS00345 PF04717 Type VI secretion system, phage-baseplate injector LY388_RS00355 PF14331 ImcF-related N-terminal domain LY388_RS00355 PF06744 Type VI secretion protein IcmF C-terminal LY388_RS00355 PF06761 Intracellular multiplication and human macrophage-killing LY388_RS00370 PF00158 Sigma-54 interaction domain LY388_RS00370 PF02954 Bacterial regulatory protein, Fis family LY388_RS00375 PF10431 C-terminal, D2-small domain, of ClpB protein LY388_RS00375 PF17871 AAA lid domain LY388_RS00375 PF07724 AAA domain (Cdc48 subfamily) LY388_RS00375 PF00004 ATPase family associated with various cellular activities (AAA) LY388_RS00385 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LY388_RS00405 PF05947 Type VI secretion system, TssF LY388_RS00415 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath LY388_RS00435 PF00849 RNA pseudouridylate synthase LY388_RS00440 PF00916 Sulfate permease family LY388_RS00440 PF01740 STAS domain LY388_RS00445 PF13419 Haloacid dehalogenase-like hydrolase LY388_RS00450 PF00563 EAL domain LY388_RS00450 PF00196 Bacterial regulatory proteins, luxR family LY388_RS00455 PF00581 Rhodanese-like domain LY388_RS00460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LY388_RS00460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LY388_RS00465 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LY388_RS00465 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LY388_RS00475 PF07504 Fungalysin/Thermolysin Propeptide Motif LY388_RS00475 PF01483 Proprotein convertase P-domain LY388_RS00475 PF02868 Thermolysin metallopeptidase, alpha-helical domain LY388_RS00475 PF01447 Thermolysin metallopeptidase, catalytic domain LY388_RS00495 PF02001 Protein of unknown function DUF134 LY388_RS00505 PF00375 Sodium:dicarboxylate symporter family LY388_RS00520 PF00376 MerR family regulatory protein LY388_RS00520 PF09278 MerR, DNA binding LY388_RS00525 PF07690 Major Facilitator Superfamily LY388_RS00530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS00530 PF03466 LysR substrate binding domain LY388_RS00535 PF00563 EAL domain LY388_RS00535 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS00535 PF03707 Bacterial signalling protein N terminal repeat LY388_RS00535 PF13188 PAS domain LY388_RS00540 PF01476 LysM domain LY388_RS00540 PF01551 Peptidase family M23 LY388_RS00540 PF08525 Opacity-associated protein A N-terminal motif LY388_RS00550 PF01740 STAS domain LY388_RS00550 PF00916 Sulfate permease family LY388_RS00555 PF07670 Nucleoside recognition LY388_RS00570 PF00563 EAL domain LY388_RS00570 PF03707 Bacterial signalling protein N terminal repeat LY388_RS00570 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS00575 PF00005 ABC transporter LY388_RS00580 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS00585 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS00590 PF12849 PBP superfamily domain LY388_RS00595 PF12729 Four helix bundle sensory module for signal transduction LY388_RS00595 PF00672 HAMP domain LY388_RS00595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS00615 PF07715 TonB-dependent Receptor Plug Domain LY388_RS00615 PF00593 TonB dependent receptor LY388_RS00620 PF00326 Prolyl oligopeptidase family LY388_RS00620 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LY388_RS00625 PF00271 Helicase conserved C-terminal domain LY388_RS00625 PF00270 DEAD/DEAH box helicase LY388_RS00635 PF03734 L,D-transpeptidase catalytic domain LY388_RS00635 PF17969 L,D-transpeptidase C-terminal domain LY388_RS00635 PF01476 LysM domain LY388_RS00640 PF00875 DNA photolyase LY388_RS00640 PF03441 FAD binding domain of DNA photolyase LY388_RS00645 PF13411 MerR HTH family regulatory protein LY388_RS00650 PF08349 Protein of unknown function (DUF1722) LY388_RS00655 PF01048 Phosphorylase superfamily LY388_RS00670 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS00675 PF11742 Protein of unknown function (DUF3302) LY388_RS00680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LY388_RS00680 PF00529 HlyD membrane-fusion protein of T1SS LY388_RS00695 PF12945 Flagellar protein YcgR LY388_RS00695 PF07238 PilZ domain LY388_RS00700 PF03616 Sodium/glutamate symporter LY388_RS00715 PF02630 SCO1/SenC LY388_RS00725 PF00375 Sodium:dicarboxylate symporter family LY388_RS00730 PF01569 PAP2 superfamily LY388_RS00750 PF00672 HAMP domain LY388_RS00750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS00750 PF02743 Cache domain LY388_RS00765 PF00704 Glycosyl hydrolases family 18 LY388_RS00765 PF08329 Chitinase A, N-terminal domain LY388_RS00770 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LY388_RS00775 PF00939 Sodium:sulfate symporter transmembrane region LY388_RS00785 PF01168 Alanine racemase, N-terminal domain LY388_RS00785 PF01757 Acyltransferase family LY388_RS00785 PF00842 Alanine racemase, C-terminal domain LY388_RS00810 PF04717 Type VI secretion system, phage-baseplate injector LY388_RS00815 PF05638 Type VI secretion system effector, Hcp LY388_RS00820 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LY388_RS00820 PF02806 Alpha amylase, C-terminal all-beta domain LY388_RS00820 PF00128 Alpha amylase, catalytic domain LY388_RS00825 PF02446 4-alpha-glucanotransferase LY388_RS00830 PF00343 Carbohydrate phosphorylase LY388_RS00835 PF17874 MalT-like TPR region LY388_RS00835 PF00196 Bacterial regulatory proteins, luxR family LY388_RS00840 PF10928 Protein of unknown function (DUF2810) LY388_RS00845 PF17200 Single Cache domain 2 LY388_RS00845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS00845 PF00672 HAMP domain LY388_RS00850 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LY388_RS00850 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LY388_RS00855 PF01709 Transcriptional regulator LY388_RS00880 PF13614 AAA domain LY388_RS00880 PF18607 ParA helix turn helix domain LY388_RS00885 PF02195 ParB-like nuclease domain LY388_RS00885 PF08775 ParB family LY388_RS00890 PF13416 Bacterial extracellular solute-binding protein LY388_RS00895 PF05127 Helicase LY388_RS00895 PF13718 GNAT acetyltransferase 2 LY388_RS00905 PF00501 AMP-binding enzyme LY388_RS00925 PF00072 Response regulator receiver domain LY388_RS00925 PF00486 Transcriptional regulatory protein, C terminal LY388_RS00930 PF08521 Two-component sensor kinase N-terminal LY388_RS00930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS00930 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS00935 PF00884 Sulfatase LY388_RS00935 PF08019 Phosphoethanolamine transferase EptA/EptB LY388_RS00940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LY388_RS00940 PF00005 ABC transporter LY388_RS00945 PF12911 N-terminal TM domain of oligopeptide transport permease C LY388_RS00945 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS00950 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS00965 PF00072 Response regulator receiver domain LY388_RS00970 PF01584 CheW-like domain LY388_RS00970 PF09078 CheY binding LY388_RS00970 PF02895 Signal transducing histidine kinase, homodimeric domain LY388_RS00970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS00970 PF01627 Hpt domain LY388_RS00975 PF01584 CheW-like domain LY388_RS00980 PF01584 CheW-like domain LY388_RS00985 PF00672 HAMP domain LY388_RS00985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS00985 PF02203 Tar ligand binding domain homologue LY388_RS00990 PF01739 CheR methyltransferase, SAM binding domain LY388_RS00990 PF03705 CheR methyltransferase, all-alpha domain LY388_RS00995 PF03975 CheD chemotactic sensory transduction LY388_RS01000 PF00072 Response regulator receiver domain LY388_RS01000 PF01339 CheB methylesterase LY388_RS01005 PF00672 HAMP domain LY388_RS01005 PF02743 Cache domain LY388_RS01005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS01015 PF00486 Transcriptional regulatory protein, C terminal LY388_RS01015 PF00072 Response regulator receiver domain LY388_RS01025 PF00005 ABC transporter LY388_RS01025 PF03412 Peptidase C39 family LY388_RS01025 PF00664 ABC transporter transmembrane region LY388_RS01040 PF00529 HlyD membrane-fusion protein of T1SS LY388_RS01045 PF01243 Pyridoxamine 5'-phosphate oxidase LY388_RS01045 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LY388_RS01050 PF00072 Response regulator receiver domain LY388_RS01050 PF00196 Bacterial regulatory proteins, luxR family LY388_RS01055 PF03781 Sulfatase-modifying factor enzyme 1 LY388_RS01065 PF12833 Helix-turn-helix domain LY388_RS01070 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LY388_RS01070 PF14850 DNA-binding domain of Proline dehydrogenase LY388_RS01070 PF00171 Aldehyde dehydrogenase family LY388_RS01070 PF01619 Proline dehydrogenase LY388_RS01080 PF00474 Sodium:solute symporter family LY388_RS01090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS01090 PF02743 Cache domain LY388_RS01090 PF00672 HAMP domain LY388_RS01095 PF01037 Lrp/AsnC ligand binding domain LY388_RS01100 PF00171 Aldehyde dehydrogenase family LY388_RS01105 PF10940 Protein of unknown function (DUF2618) LY388_RS01110 PF01276 Orn/Lys/Arg decarboxylase, major domain LY388_RS01110 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LY388_RS01110 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LY388_RS01115 PF13520 Amino acid permease LY388_RS01120 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LY388_RS01125 PF04013 Putative SAM-dependent RNA methyltransferase LY388_RS01130 PF00579 tRNA synthetases class I (W and Y) LY388_RS01135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS01135 PF03466 LysR substrate binding domain LY388_RS01140 PF00106 short chain dehydrogenase LY388_RS01150 PF03466 LysR substrate binding domain LY388_RS01150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS01155 PF13460 NAD(P)H-binding LY388_RS01165 PF00857 Isochorismatase family LY388_RS01180 PF00892 EamA-like transporter family LY388_RS01205 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LY388_RS01210 PF05068 Mannitol repressor LY388_RS01215 PF01232 Mannitol dehydrogenase Rossmann domain LY388_RS01215 PF08125 Mannitol dehydrogenase C-terminal domain LY388_RS01220 PF02378 Phosphotransferase system, EIIC LY388_RS01220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LY388_RS01220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LY388_RS01225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LY388_RS01225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LY388_RS01225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LY388_RS01225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LY388_RS01230 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS01235 PF00497 Bacterial extracellular solute-binding proteins, family 3 LY388_RS01240 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS01245 PF00005 ABC transporter LY388_RS01250 PF00793 DAHP synthetase I family LY388_RS01260 PF00672 HAMP domain LY388_RS01260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS01275 PF12729 Four helix bundle sensory module for signal transduction LY388_RS01275 PF00672 HAMP domain LY388_RS01275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS01285 PF00128 Alpha amylase, catalytic domain LY388_RS01285 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LY388_RS01290 PF02264 LamB porin LY388_RS01295 PF07148 Maltose operon periplasmic protein precursor (MalM) LY388_RS01305 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LY388_RS01325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS01325 PF03466 LysR substrate binding domain LY388_RS01330 PF07681 DoxX LY388_RS01335 PF06029 AlkA N-terminal domain LY388_RS01335 PF00730 HhH-GPD superfamily base excision DNA repair protein LY388_RS01340 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LY388_RS01340 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LY388_RS01350 PF00939 Sodium:sulfate symporter transmembrane region LY388_RS01355 PF17203 Single cache domain 3 LY388_RS01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS01360 PF00072 Response regulator receiver domain LY388_RS01360 PF12431 Transcriptional regulator LY388_RS01365 PF03600 Citrate transporter LY388_RS01370 PF07670 Nucleoside recognition LY388_RS01375 PF07670 Nucleoside recognition LY388_RS01380 PF00462 Glutaredoxin LY388_RS01385 PF00892 EamA-like transporter family LY388_RS01390 PF13609 Gram-negative porin LY388_RS01395 PF02566 OsmC-like protein LY388_RS01400 PF01047 MarR family LY388_RS01405 PF01557 Fumarylacetoacetate (FAA) hydrolase family LY388_RS01420 PF12833 Helix-turn-helix domain LY388_RS01425 PF01810 LysE type translocator LY388_RS01435 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LY388_RS01445 PF00005 ABC transporter LY388_RS01445 PF00664 ABC transporter transmembrane region LY388_RS01455 PF00270 DEAD/DEAH box helicase LY388_RS01455 PF00271 Helicase conserved C-terminal domain LY388_RS01460 PF01554 MatE LY388_RS01465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS01465 PF08447 PAS fold LY388_RS01470 PF02896 PEP-utilising enzyme, TIM barrel domain LY388_RS01470 PF00391 PEP-utilising enzyme, mobile domain LY388_RS01470 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LY388_RS01475 PF03618 Kinase/pyrophosphorylase LY388_RS01485 PF01070 FMN-dependent dehydrogenase LY388_RS01490 PF02652 L-lactate permease LY388_RS01500 PF03466 LysR substrate binding domain LY388_RS01500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS01515 PF08447 PAS fold LY388_RS01515 PF13426 PAS domain LY388_RS01515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS01520 PF00497 Bacterial extracellular solute-binding proteins, family 3 LY388_RS01525 PF00005 ABC transporter LY388_RS01525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LY388_RS01535 PF13654 AAA domain LY388_RS01535 PF05362 Lon protease (S16) C-terminal proteolytic domain LY388_RS01540 PF00672 HAMP domain LY388_RS01540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS01540 PF17200 Single Cache domain 2 LY388_RS01550 PF07690 Major Facilitator Superfamily LY388_RS01560 PF06865 Pyrimidine/purine nucleoside phosphorylase LY388_RS01565 PF05726 Pirin C-terminal cupin domain LY388_RS01565 PF02678 Pirin LY388_RS01575 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS01575 PF00563 EAL domain LY388_RS01580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS01580 PF03466 LysR substrate binding domain LY388_RS01600 PF00563 EAL domain LY388_RS01600 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS01600 PF03707 Bacterial signalling protein N terminal repeat LY388_RS01615 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS01620 PF01047 MarR family LY388_RS01625 PF01584 CheW-like domain LY388_RS01625 PF00072 Response regulator receiver domain LY388_RS01635 PF00196 Bacterial regulatory proteins, luxR family LY388_RS01640 PF01906 Putative heavy-metal-binding LY388_RS01655 PF13302 Acetyltransferase (GNAT) domain LY388_RS01660 PF00005 ABC transporter LY388_RS01660 PF08402 TOBE domain LY388_RS01665 PF01547 Bacterial extracellular solute-binding protein LY388_RS01670 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS01670 PF14785 Maltose transport system permease protein MalF P2 domain LY388_RS01675 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS01690 PF00455 DeoR C terminal sensor domain LY388_RS01690 PF08220 DeoR-like helix-turn-helix domain LY388_RS01695 PF08448 PAS fold LY388_RS01695 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS01720 PF00313 'Cold-shock' DNA-binding domain LY388_RS01730 PF05661 Protein of unknown function (DUF808) LY388_RS01735 PF05958 tRNA (Uracil-5-)-methyltransferase LY388_RS01745 PF05656 Protein of unknown function (DUF805) LY388_RS01755 PF01979 Amidohydrolase family LY388_RS01760 PF00111 2Fe-2S iron-sulfur cluster binding domain LY388_RS01760 PF03473 MOSC domain LY388_RS01760 PF03476 MOSC N-terminal beta barrel domain LY388_RS01760 PF00111 2Fe-2S iron-sulfur cluster binding domain LY388_RS01760 PF03473 MOSC domain LY388_RS01760 PF03476 MOSC N-terminal beta barrel domain LY388_RS01765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS01765 PF00672 HAMP domain LY388_RS01765 PF02743 Cache domain LY388_RS01795 PF00005 ABC transporter LY388_RS01800 PF01032 FecCD transport family LY388_RS01805 PF01497 Periplasmic binding protein LY388_RS01810 PF02472 Biopolymer transport protein ExbD/TolR LY388_RS01815 PF01618 MotA/TolQ/ExbB proton channel family LY388_RS01820 PF03544 Gram-negative bacterial TonB protein C-terminal LY388_RS01825 PF04055 Radical SAM superfamily LY388_RS01830 PF06228 Haem utilisation ChuX/HutX LY388_RS01835 PF01243 Pyridoxamine 5'-phosphate oxidase LY388_RS01840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS01840 PF00672 HAMP domain LY388_RS01845 PF13556 PucR C-terminal helix-turn-helix domain LY388_RS01845 PF05651 Putative sugar diacid recognition LY388_RS01845 PF17853 GGDEF-like domain LY388_RS01850 PF02447 GntP family permease LY388_RS01855 PF02595 Glycerate kinase family LY388_RS01880 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LY388_RS01880 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LY388_RS01885 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LY388_RS01890 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LY388_RS01890 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LY388_RS01895 PF01966 HD domain LY388_RS01920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LY388_RS01925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS01925 PF03466 LysR substrate binding domain LY388_RS01940 PF00155 Aminotransferase class I and II LY388_RS01945 PF08240 Alcohol dehydrogenase GroES-like domain LY388_RS01945 PF00107 Zinc-binding dehydrogenase LY388_RS01950 PF01979 Amidohydrolase family LY388_RS01960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS01960 PF03466 LysR substrate binding domain LY388_RS01965 PF00291 Pyridoxal-phosphate dependent enzyme LY388_RS01980 PF02322 Cytochrome bd terminal oxidase subunit II LY388_RS01985 PF01654 Cytochrome bd terminal oxidase subunit I LY388_RS01990 PF00155 Aminotransferase class I and II LY388_RS01990 PF00392 Bacterial regulatory proteins, gntR family LY388_RS01995 PF00768 D-alanyl-D-alanine carboxypeptidase LY388_RS02005 PF03922 OmpW family LY388_RS02015 PF03413 Peptidase propeptide and YPEB domain LY388_RS02015 PF01447 Thermolysin metallopeptidase, catalytic domain LY388_RS02015 PF02868 Thermolysin metallopeptidase, alpha-helical domain LY388_RS02015 PF07504 Fungalysin/Thermolysin Propeptide Motif LY388_RS02015 PF04151 Bacterial pre-peptidase C-terminal domain LY388_RS02020 PF13426 PAS domain LY388_RS02020 PF08447 PAS fold LY388_RS02020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS02025 PF12262 Bacterial virulence factor lipase N-terminal LY388_RS02030 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LY388_RS02040 PF00128 Alpha amylase, catalytic domain LY388_RS02045 PF00248 Aldo/keto reductase family LY388_RS02055 PF00005 ABC transporter LY388_RS02060 PF02687 FtsX-like permease family LY388_RS02060 PF00005 ABC transporter LY388_RS02060 PF12704 MacB-like periplasmic core domain LY388_RS02075 PF06580 Histidine kinase LY388_RS02075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS02075 PF13492 GAF domain LY388_RS02075 PF07694 5TMR of 5TMR-LYT LY388_RS02080 PF00072 Response regulator receiver domain LY388_RS02080 PF04397 LytTr DNA-binding domain LY388_RS02090 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS02095 PF13520 Amino acid permease LY388_RS02110 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LY388_RS02110 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LY388_RS02115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LY388_RS02120 PF02566 OsmC-like protein LY388_RS02125 PF01595 Cyclin M transmembrane N-terminal domain LY388_RS02125 PF03471 Transporter associated domain LY388_RS02125 PF00571 CBS domain LY388_RS02130 PF14602 Hexapeptide repeat of succinyl-transferase LY388_RS02130 PF00132 Bacterial transferase hexapeptide (six repeats) LY388_RS02130 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal LY388_RS02135 PF00892 EamA-like transporter family LY388_RS02145 PF03466 LysR substrate binding domain LY388_RS02145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS02165 PF00501 AMP-binding enzyme LY388_RS02165 PF13193 AMP-binding enzyme C-terminal domain LY388_RS02170 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LY388_RS02175 PF01329 Pterin 4 alpha carbinolamine dehydratase LY388_RS02185 PF00583 Acetyltransferase (GNAT) family LY388_RS02190 PF00202 Aminotransferase class-III LY388_RS02195 PF06339 Ectoine synthase LY388_RS02200 PF13840 ACT domain LY388_RS02200 PF00696 Amino acid kinase family LY388_RS02210 PF00118 TCP-1/cpn60 chaperonin family LY388_RS02215 PF00166 Chaperonin 10 Kd subunit LY388_RS02220 PF00571 CBS domain LY388_RS02220 PF01769 Divalent cation transporter LY388_RS02220 PF03448 MgtE intracellular N domain LY388_RS02230 PF17810 Arginine decarboxylase helical bundle domain LY388_RS02230 PF17944 Arginine decarboxylase C-terminal helical extension LY388_RS02230 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LY388_RS02235 PF00491 Arginase family LY388_RS02240 PF04151 Bacterial pre-peptidase C-terminal domain LY388_RS02240 PF04389 Peptidase family M28 LY388_RS02245 PF01447 Thermolysin metallopeptidase, catalytic domain LY388_RS02245 PF03413 Peptidase propeptide and YPEB domain LY388_RS02245 PF02868 Thermolysin metallopeptidase, alpha-helical domain LY388_RS02245 PF04151 Bacterial pre-peptidase C-terminal domain LY388_RS02245 PF07504 Fungalysin/Thermolysin Propeptide Motif LY388_RS02250 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LY388_RS02250 PF18416 N-acetylglucosamine binding protein domain 2 LY388_RS02255 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LY388_RS02260 PF01575 MaoC like domain LY388_RS02265 PF12849 PBP superfamily domain LY388_RS02275 PF08206 Ribonuclease B OB domain LY388_RS02275 PF00575 S1 RNA binding domain LY388_RS02275 PF00773 RNB domain LY388_RS02280 PF00270 DEAD/DEAH box helicase LY388_RS02280 PF00271 Helicase conserved C-terminal domain LY388_RS02280 PF03880 DbpA RNA binding domain LY388_RS02290 PF00884 Sulfatase LY388_RS02295 PF00294 pfkB family carbohydrate kinase LY388_RS02365 PF01555 DNA methylase LY388_RS02650 PF08774 VRR-NUC domain LY388_RS02650 PF04851 Type III restriction enzyme, res subunit LY388_RS02655 PF18273 Type III R-M EcoP15I C-terminal domain LY388_RS02655 PF01555 DNA methylase LY388_RS02665 PF00717 Peptidase S24-like LY388_RS02670 PF11799 impB/mucB/samB family C-terminal domain LY388_RS02670 PF00817 impB/mucB/samB family LY388_RS02670 PF13438 Domain of unknown function (DUF4113) LY388_RS02690 PF13419 Haloacid dehalogenase-like hydrolase LY388_RS02705 PF00226 DnaJ domain LY388_RS02705 PF01556 DnaJ C terminal domain LY388_RS02705 PF00684 DnaJ central domain LY388_RS02715 PF00563 EAL domain LY388_RS02715 PF00498 FHA domain LY388_RS02715 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS02720 PF07055 Enoyl reductase FAD binding domain LY388_RS02720 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LY388_RS02720 PF12241 Trans-2-enoyl-CoA reductase catalytic region LY388_RS02725 PF13472 GDSL-like Lipase/Acylhydrolase family LY388_RS02730 PF00005 ABC transporter LY388_RS02740 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LY388_RS02740 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LY388_RS02750 PF02626 Carboxyltransferase domain, subdomain A and B LY388_RS02760 PF03746 LamB/YcsF family LY388_RS02765 PF16363 GDP-mannose 4,6 dehydratase LY388_RS02770 PF12729 Four helix bundle sensory module for signal transduction LY388_RS02770 PF00672 HAMP domain LY388_RS02770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS02775 PF03222 Tryptophan/tyrosine permease family LY388_RS02780 PF04336 Acyl carrier protein phosphodiesterase LY388_RS02785 PF00270 DEAD/DEAH box helicase LY388_RS02785 PF00271 Helicase conserved C-terminal domain LY388_RS02790 PF08361 MAATS-type transcriptional repressor, C-terminal region LY388_RS02790 PF00440 Bacterial regulatory proteins, tetR family LY388_RS02795 PF00034 Cytochrome c LY388_RS02800 PF01212 Beta-eliminating lyase LY388_RS02805 PF00293 NUDIX domain LY388_RS02810 PF12592 Protein of unknown function (DUF3763) LY388_RS02810 PF17868 AAA lid domain LY388_RS02810 PF07728 AAA domain (dynein-related subfamily) LY388_RS02815 PF05762 VWA domain containing CoxE-like protein LY388_RS02825 PF00005 ABC transporter LY388_RS02830 PF00497 Bacterial extracellular solute-binding proteins, family 3 LY388_RS02835 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS02840 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS02860 PF07690 Major Facilitator Superfamily LY388_RS02865 PF00085 Thioredoxin LY388_RS02870 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LY388_RS02870 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LY388_RS02875 PF13183 4Fe-4S dicluster domain LY388_RS02875 PF02754 Cysteine-rich domain LY388_RS02880 PF00890 FAD binding domain LY388_RS02885 PF01266 FAD dependent oxidoreductase LY388_RS02885 PF04324 BFD-like [2Fe-2S] binding domain LY388_RS02890 PF00230 Major intrinsic protein LY388_RS02895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LY388_RS02895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LY388_RS02905 PF04363 Protein of unknown function (DUF496) LY388_RS02915 PF04337 Protein of unknown function, DUF480 LY388_RS02920 PF01541 GIY-YIG catalytic domain LY388_RS02930 PF13407 Periplasmic binding protein domain LY388_RS02935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS02935 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS02935 PF09308 LuxQ, periplasmic LY388_RS02935 PF00072 Response regulator receiver domain LY388_RS02970 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LY388_RS02970 PF07685 CobB/CobQ-like glutamine amidotransferase domain LY388_RS02980 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS02985 PF00005 ABC transporter LY388_RS02985 PF03459 TOBE domain LY388_RS03010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS03010 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS03010 PF08448 PAS fold LY388_RS03010 PF13188 PAS domain LY388_RS03010 PF00072 Response regulator receiver domain LY388_RS03015 PF12805 FUSC-like inner membrane protein yccS LY388_RS03020 PF13361 UvrD-like helicase C-terminal domain LY388_RS03020 PF00580 UvrD/REP helicase N-terminal domain LY388_RS03020 PF12462 DNA helicase IV / RNA helicase N terminal LY388_RS03035 PF01219 Prokaryotic diacylglycerol kinase LY388_RS03040 PF00857 Isochorismatase family LY388_RS03045 PF02142 MGS-like domain LY388_RS03050 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LY388_RS03055 PF01627 Hpt domain LY388_RS03055 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS03055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS03055 PF00672 HAMP domain LY388_RS03055 PF00072 Response regulator receiver domain LY388_RS03060 PF02887 Pyruvate kinase, alpha/beta domain LY388_RS03060 PF00224 Pyruvate kinase, barrel domain LY388_RS03065 PF07690 Major Facilitator Superfamily LY388_RS03075 PF02743 Cache domain LY388_RS03075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS03075 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS03080 PF00072 Response regulator receiver domain LY388_RS03080 PF02954 Bacterial regulatory protein, Fis family LY388_RS03080 PF14532 Sigma-54 interaction domain LY388_RS03090 PF00465 Iron-containing alcohol dehydrogenase LY388_RS03095 PF06483 Chitinase C LY388_RS03095 PF00704 Glycosyl hydrolases family 18 LY388_RS03100 PF00483 Nucleotidyl transferase LY388_RS03105 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS03120 PF13721 SecD export protein N-terminal TM region LY388_RS03120 PF02355 Protein export membrane protein LY388_RS03120 PF07549 SecD/SecF GG Motif LY388_RS03125 PF07549 SecD/SecF GG Motif LY388_RS03125 PF02355 Protein export membrane protein LY388_RS03130 PF00106 short chain dehydrogenase LY388_RS03135 PF02803 Thiolase, C-terminal domain LY388_RS03135 PF00108 Thiolase, N-terminal domain LY388_RS03145 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LY388_RS03150 PF08402 TOBE domain LY388_RS03150 PF00005 ABC transporter LY388_RS03155 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS03165 PF07690 Major Facilitator Superfamily LY388_RS03170 PF05231 MASE1 LY388_RS03170 PF07730 Histidine kinase LY388_RS03170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS03175 PF00196 Bacterial regulatory proteins, luxR family LY388_RS03175 PF00072 Response regulator receiver domain LY388_RS03180 PF01966 HD domain LY388_RS03190 PF03264 NapC/NirT cytochrome c family, N-terminal region LY388_RS03195 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LY388_RS03200 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LY388_RS03200 PF00384 Molybdopterin oxidoreductase LY388_RS03200 PF01568 Molydopterin dinucleotide binding domain LY388_RS03210 PF12838 4Fe-4S dicluster domain LY388_RS03210 PF13187 4Fe-4S dicluster domain LY388_RS03215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS03215 PF00672 HAMP domain LY388_RS03215 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LY388_RS03215 PF07730 Histidine kinase LY388_RS03220 PF00072 Response regulator receiver domain LY388_RS03220 PF00196 Bacterial regulatory proteins, luxR family LY388_RS03225 PF00356 Bacterial regulatory proteins, lacI family LY388_RS03240 PF00474 Sodium:solute symporter family LY388_RS03245 PF03315 Serine dehydratase beta chain LY388_RS03245 PF03313 Serine dehydratase alpha chain LY388_RS03250 PF03606 C4-dicarboxylate anaerobic carrier LY388_RS03255 PF00672 HAMP domain LY388_RS03255 PF12729 Four helix bundle sensory module for signal transduction LY388_RS03255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS03260 PF13419 Haloacid dehalogenase-like hydrolase LY388_RS03265 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LY388_RS03265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LY388_RS03270 PF13488 Glycine zipper LY388_RS03270 PF00691 OmpA family LY388_RS03275 PF00672 HAMP domain LY388_RS03275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS03280 PF01266 FAD dependent oxidoreductase LY388_RS03280 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LY388_RS03285 PF00294 pfkB family carbohydrate kinase LY388_RS03290 PF08244 Glycosyl hydrolases family 32 C terminal LY388_RS03290 PF00251 Glycosyl hydrolases family 32 N-terminal domain LY388_RS03295 PF00356 Bacterial regulatory proteins, lacI family LY388_RS03300 PF00367 phosphotransferase system, EIIB LY388_RS03300 PF02378 Phosphotransferase system, EIIC LY388_RS03345 PF07992 Pyridine nucleotide-disulphide oxidoreductase LY388_RS03345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LY388_RS03360 PF04143 Sulphur transport LY388_RS03375 PF00873 AcrB/AcrD/AcrF family LY388_RS03380 PF00881 Nitroreductase family LY388_RS03385 PF03992 Antibiotic biosynthesis monooxygenase LY388_RS03390 PF03466 LysR substrate binding domain LY388_RS03390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS03400 PF06942 GlpM protein LY388_RS03415 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LY388_RS03415 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LY388_RS03440 PF02779 Transketolase, pyrimidine binding domain LY388_RS03440 PF00456 Transketolase, thiamine diphosphate binding domain LY388_RS03440 PF02780 Transketolase, C-terminal domain LY388_RS03445 PF00923 Transaldolase/Fructose-6-phosphate aldolase LY388_RS03450 PF04198 Putative sugar-binding domain LY388_RS03455 PF08329 Chitinase A, N-terminal domain LY388_RS03455 PF00704 Glycosyl hydrolases family 18 LY388_RS03460 PF00581 Rhodanese-like domain LY388_RS03470 PF00899 ThiF family LY388_RS03475 PF03454 MoeA C-terminal region (domain IV) LY388_RS03475 PF03453 MoeA N-terminal region (domain I and II) LY388_RS03475 PF00994 Probable molybdopterin binding domain LY388_RS03480 PF01227 GTP cyclohydrolase I LY388_RS03485 PF01625 Peptide methionine sulfoxide reductase LY388_RS03485 PF01641 SelR domain LY388_RS03490 PF01268 Formate--tetrahydrofolate ligase LY388_RS03495 PF01741 Large-conductance mechanosensitive channel, MscL LY388_RS03510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS03510 PF03466 LysR substrate binding domain LY388_RS03515 PF13419 Haloacid dehalogenase-like hydrolase LY388_RS03520 PF01272 Transcription elongation factor, GreA/GreB, C-term LY388_RS03520 PF14760 Rnk N-terminus LY388_RS03525 PF13419 Haloacid dehalogenase-like hydrolase LY388_RS03530 PF00202 Aminotransferase class-III LY388_RS03535 PF00266 Aminotransferase class-V LY388_RS03545 PF00005 ABC transporter LY388_RS03550 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS03555 PF00392 Bacterial regulatory proteins, gntR family LY388_RS03555 PF07702 UTRA domain LY388_RS03610 PF01253 Translation initiation factor SUI1 LY388_RS03620 PF07478 D-ala D-ala ligase C-terminus LY388_RS03620 PF01820 D-ala D-ala ligase N-terminus LY388_RS03630 PF00583 Acetyltransferase (GNAT) family LY388_RS03630 PF13380 CoA binding domain LY388_RS03630 PF13607 Succinyl-CoA ligase like flavodoxin domain LY388_RS03635 PF03466 LysR substrate binding domain LY388_RS03635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS03640 PF04886 PT repeat LY388_RS03640 PF07715 TonB-dependent Receptor Plug Domain LY388_RS03640 PF00593 TonB dependent receptor LY388_RS03645 PF12793 Sugar transport-related sRNA regulator N-term LY388_RS03645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LY388_RS03655 PF03061 Thioesterase superfamily LY388_RS03675 PF02798 Glutathione S-transferase, N-terminal domain LY388_RS03675 PF00043 Glutathione S-transferase, C-terminal domain LY388_RS03690 PF03479 Plants and Prokaryotes Conserved (PCC) domain LY388_RS03690 PF12804 MobA-like NTP transferase domain LY388_RS03690 PF00132 Bacterial transferase hexapeptide (six repeats) LY388_RS03695 PF00005 ABC transporter LY388_RS03695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LY388_RS03700 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS03700 PF12911 N-terminal TM domain of oligopeptide transport permease C LY388_RS03705 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS03710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LY388_RS03735 PF00854 POT family LY388_RS03740 PF01797 Transposase IS200 like LY388_RS03750 PF03701 Uncharacterised protein family (UPF0181) LY388_RS03765 PF00486 Transcriptional regulatory protein, C terminal LY388_RS03765 PF00072 Response regulator receiver domain LY388_RS03775 PF02233 NAD(P) transhydrogenase beta subunit LY388_RS03780 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LY388_RS03780 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LY388_RS03780 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LY388_RS03795 PF17158 Membrane-associated sensor, integral membrane domain LY388_RS03795 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS03815 PF08448 PAS fold LY388_RS03815 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS03845 PF03831 PhnA domain LY388_RS03845 PF08274 PhnA Zinc-Ribbon LY388_RS03855 PF03741 Integral membrane protein TerC family LY388_RS03860 PF02872 5'-nucleotidase, C-terminal domain LY388_RS03860 PF00149 Calcineurin-like phosphoesterase LY388_RS03865 PF11398 Protein of unknown function (DUF2813) LY388_RS03870 PF06496 Protein of unknown function (DUF1097) LY388_RS03875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS03875 PF03466 LysR substrate binding domain LY388_RS03880 PF01226 Formate/nitrite transporter LY388_RS03885 PF04264 YceI-like domain LY388_RS03890 PF01292 Prokaryotic cytochrome b561 LY388_RS03900 PF10388 EAL-domain associated signalling protein domain LY388_RS03900 PF00563 EAL domain LY388_RS03910 PF09335 SNARE associated Golgi protein LY388_RS03915 PF02416 mttA/Hcf106 family LY388_RS03920 PF00072 Response regulator receiver domain LY388_RS03920 PF00486 Transcriptional regulatory protein, C terminal LY388_RS03925 PF13493 Domain of unknown function (DUF4118) LY388_RS03925 PF02702 Osmosensitive K+ channel His kinase sensor domain LY388_RS03925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS03925 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS03930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LY388_RS03930 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LY388_RS03930 PF10371 Domain of unknown function LY388_RS03930 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LY388_RS03930 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LY388_RS03935 PF02705 K+ potassium transporter LY388_RS03940 PF01926 50S ribosome-binding GTPase LY388_RS03945 PF02492 CobW/HypB/UreG, nucleotide-binding domain LY388_RS03945 PF07683 Cobalamin synthesis protein cobW C-terminal domain LY388_RS03950 PF00654 Voltage gated chloride channel LY388_RS03960 PF00155 Aminotransferase class I and II LY388_RS03965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS03965 PF00072 Response regulator receiver domain LY388_RS03970 PF13476 AAA domain LY388_RS03975 PF12320 Type 5 capsule protein repressor C-terminal domain LY388_RS03975 PF00149 Calcineurin-like phosphoesterase LY388_RS03980 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LY388_RS03980 PF00356 Bacterial regulatory proteins, lacI family LY388_RS03985 PF00381 PTS HPr component phosphorylation site LY388_RS03985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LY388_RS03990 PF00294 pfkB family carbohydrate kinase LY388_RS03995 PF02378 Phosphotransferase system, EIIC LY388_RS03995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LY388_RS04000 PF08443 RimK-like ATP-grasp domain LY388_RS04000 PF18030 RimK PreATP-grasp domain LY388_RS04005 PF00155 Aminotransferase class I and II LY388_RS04015 PF03477 ATP cone domain LY388_RS04015 PF13597 Anaerobic ribonucleoside-triphosphate reductase LY388_RS04065 PF01966 HD domain LY388_RS04080 PF00293 NUDIX domain LY388_RS04085 PF09722 Protein of unknown function (DUF2384) LY388_RS04105 PF04229 GrpB protein LY388_RS04185 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LY388_RS04215 PF13302 Acetyltransferase (GNAT) domain LY388_RS04260 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system LY388_RS04265 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LY388_RS04310 PF13302 Acetyltransferase (GNAT) domain LY388_RS04330 PF04229 GrpB protein LY388_RS04370 PF13302 Acetyltransferase (GNAT) domain LY388_RS04410 PF00005 ABC transporter LY388_RS04430 PF08765 Mor transcription activator family LY388_RS04465 PF13673 Acetyltransferase (GNAT) domain LY388_RS04550 PF00561 alpha/beta hydrolase fold LY388_RS04565 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA LY388_RS04570 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system LY388_RS04595 PF01636 Phosphotransferase enzyme family LY388_RS04640 PF08212 Lipocalin-like domain LY388_RS04670 PF00561 alpha/beta hydrolase fold LY388_RS04700 PF08212 Lipocalin-like domain LY388_RS04765 PF01965 DJ-1/PfpI family LY388_RS04765 PF12833 Helix-turn-helix domain LY388_RS04800 PF00561 alpha/beta hydrolase fold LY388_RS04805 PF13419 Haloacid dehalogenase-like hydrolase LY388_RS04815 PF00132 Bacterial transferase hexapeptide (six repeats) LY388_RS04850 PF02016 LD-carboxypeptidase N-terminal domain LY388_RS04850 PF17676 LD-carboxypeptidase C-terminal domain LY388_RS04855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LY388_RS04880 PF02567 Phenazine biosynthesis-like protein LY388_RS04950 PF13302 Acetyltransferase (GNAT) domain LY388_RS04975 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LY388_RS05030 PF12833 Helix-turn-helix domain LY388_RS05030 PF01965 DJ-1/PfpI family LY388_RS05050 PF00561 alpha/beta hydrolase fold LY388_RS05155 PF13495 Phage integrase, N-terminal SAM-like domain LY388_RS05155 PF00589 Phage integrase family LY388_RS05160 PF00453 Ribosomal protein L20 LY388_RS05165 PF01632 Ribosomal protein L35 LY388_RS05170 PF00707 Translation initiation factor IF-3, C-terminal domain LY388_RS05170 PF05198 Translation initiation factor IF-3, N-terminal domain LY388_RS05175 PF03129 Anticodon binding domain LY388_RS05175 PF02824 TGS domain LY388_RS05175 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LY388_RS05175 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LY388_RS05180 PF08669 Glycine cleavage T-protein C-terminal barrel domain LY388_RS05180 PF01571 Aminomethyltransferase folate-binding domain LY388_RS05190 PF00464 Serine hydroxymethyltransferase LY388_RS05195 PF01597 Glycine cleavage H-protein LY388_RS05200 PF02347 Glycine cleavage system P-protein LY388_RS05205 PF00194 Eukaryotic-type carbonic anhydrase LY388_RS05220 PF00768 D-alanyl-D-alanine carboxypeptidase LY388_RS05220 PF07943 Penicillin-binding protein 5, C-terminal domain LY388_RS05225 PF00282 Pyridoxal-dependent decarboxylase conserved domain LY388_RS05230 PF02743 Cache domain LY388_RS05230 PF00672 HAMP domain LY388_RS05230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS05240 PF00672 HAMP domain LY388_RS05240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS05240 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS05245 PF00072 Response regulator receiver domain LY388_RS05245 PF00486 Transcriptional regulatory protein, C terminal LY388_RS05260 PF00132 Bacterial transferase hexapeptide (six repeats) LY388_RS05265 PF00128 Alpha amylase, catalytic domain LY388_RS05280 PF00455 DeoR C terminal sensor domain LY388_RS05280 PF08220 DeoR-like helix-turn-helix domain LY388_RS05285 PF03611 PTS system sugar-specific permease component LY388_RS05290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LY388_RS05295 PF00596 Class II Aldolase and Adducin N-terminal domain LY388_RS05305 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LY388_RS05310 PF01261 Xylose isomerase-like TIM barrel LY388_RS05320 PF00072 Response regulator receiver domain LY388_RS05320 PF00486 Transcriptional regulatory protein, C terminal LY388_RS05325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS05325 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS05325 PF00672 HAMP domain LY388_RS05335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS05335 PF03466 LysR substrate binding domain LY388_RS05350 PF01022 Bacterial regulatory protein, arsR family LY388_RS05355 PF00871 Acetokinase family LY388_RS05365 PF07715 TonB-dependent Receptor Plug Domain LY388_RS05365 PF00593 TonB dependent receptor LY388_RS05370 PF12833 Helix-turn-helix domain LY388_RS05375 PF00005 ABC transporter LY388_RS05380 PF01032 FecCD transport family LY388_RS05385 PF01032 FecCD transport family LY388_RS05405 PF05547 Immune inhibitor A peptidase M6 LY388_RS05405 PF00801 PKD domain LY388_RS05410 PF03280 Proteobacterial lipase chaperone protein LY388_RS05415 PF00561 alpha/beta hydrolase fold LY388_RS05420 PF12729 Four helix bundle sensory module for signal transduction LY388_RS05420 PF00672 HAMP domain LY388_RS05420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS05425 PF16458 Beta-prism lectin LY388_RS05425 PF12563 Hemolytic toxin N terminal LY388_RS05425 PF07968 Leukocidin/Hemolysin toxin family LY388_RS05430 PF00657 GDSL-like Lipase/Acylhydrolase LY388_RS05435 PF08448 PAS fold LY388_RS05435 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS05445 PF07690 Major Facilitator Superfamily LY388_RS05450 PF03553 Na+/H+ antiporter family LY388_RS05460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS05460 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS05460 PF00497 Bacterial extracellular solute-binding proteins, family 3 LY388_RS05465 PF11849 Domain of unknown function (DUF3369) LY388_RS05470 PF01467 Cytidylyltransferase-like LY388_RS05475 PF02540 NAD synthase LY388_RS05480 PF03605 Anaerobic c4-dicarboxylate membrane transporter LY388_RS05485 PF11638 DnaA N-terminal domain LY388_RS05485 PF00308 Bacterial dnaA protein LY388_RS05485 PF08299 Bacterial dnaA protein helix-turn-helix LY388_RS05490 PF00712 DNA polymerase III beta subunit, N-terminal domain LY388_RS05490 PF02767 DNA polymerase III beta subunit, central domain LY388_RS05490 PF02768 DNA polymerase III beta subunit, C-terminal domain LY388_RS05495 PF02463 RecF/RecN/SMC N terminal domain LY388_RS05500 PF00204 DNA gyrase B LY388_RS05500 PF00986 DNA gyrase B subunit, carboxyl terminus LY388_RS05500 PF18053 DNA gyrase B subunit insert domain LY388_RS05500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS05500 PF01751 Toprim domain LY388_RS05510 PF00011 Hsp20/alpha crystallin family LY388_RS05515 PF00155 Aminotransferase class I and II LY388_RS05520 PF05746 DALR anticodon binding domain LY388_RS05520 PF02092 Glycyl-tRNA synthetase beta subunit LY388_RS05525 PF02091 Glycyl-tRNA synthetase alpha subunit LY388_RS05530 PF01169 Uncharacterized protein family UPF0016 LY388_RS05540 PF01206 Sulfurtransferase TusA LY388_RS05550 PF08240 Alcohol dehydrogenase GroES-like domain LY388_RS05550 PF00107 Zinc-binding dehydrogenase LY388_RS05555 PF00291 Pyridoxal-phosphate dependent enzyme LY388_RS05555 PF00585 C-terminal regulatory domain of Threonine dehydratase LY388_RS05560 PF00920 Dehydratase family LY388_RS05565 PF01063 Amino-transferase class IV LY388_RS05575 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LY388_RS05575 PF00205 Thiamine pyrophosphate enzyme, central domain LY388_RS05575 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LY388_RS05580 PF01078 Magnesium chelatase, subunit ChlI LY388_RS05580 PF13335 Magnesium chelatase, subunit ChlI C-terminal LY388_RS05585 PF01553 Acyltransferase LY388_RS05590 PF01323 DSBA-like thioredoxin domain LY388_RS05595 PF01636 Phosphotransferase enzyme family LY388_RS05600 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LY388_RS05600 PF13746 4Fe-4S dicluster domain LY388_RS05600 PF12801 4Fe-4S binding domain LY388_RS05605 PF06288 Protein of unknown function (DUF1040) LY388_RS05610 PF07070 SpoOM protein LY388_RS05615 PF03006 Haemolysin-III related LY388_RS05625 PF02386 Cation transport protein LY388_RS05630 PF02254 TrkA-N domain LY388_RS05630 PF02080 TrkA-C domain LY388_RS05635 PF01029 NusB family LY388_RS05635 PF01189 16S rRNA methyltransferase RsmB/F LY388_RS05640 PF00551 Formyl transferase LY388_RS05640 PF02911 Formyl transferase, C-terminal domain LY388_RS05645 PF01327 Polypeptide deformylase LY388_RS05650 PF01476 LysM domain LY388_RS05655 PF02481 DNA recombination-mediator protein A LY388_RS05655 PF17782 DprA winged helix domain LY388_RS05660 PF04361 Protein of unknown function (DUF494) LY388_RS05665 PF01396 Topoisomerase DNA binding C4 zinc finger LY388_RS05670 PF02222 ATP-grasp domain LY388_RS05670 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LY388_RS05675 PF00731 AIR carboxylase LY388_RS05680 PF01300 Telomere recombination LY388_RS05685 PF01218 Coproporphyrinogen III oxidase LY388_RS05690 PF08501 Shikimate dehydrogenase substrate binding domain LY388_RS05690 PF01488 Shikimate / quinate 5-dehydrogenase LY388_RS05690 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LY388_RS05700 PF00132 Bacterial transferase hexapeptide (six repeats) LY388_RS05735 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LY388_RS05740 PF01964 Radical SAM ThiC family LY388_RS05740 PF13667 ThiC-associated domain LY388_RS05745 PF02581 Thiamine monophosphate synthase LY388_RS05750 PF00899 ThiF family LY388_RS05755 PF02597 ThiS family LY388_RS05760 PF05690 Thiazole biosynthesis protein ThiG LY388_RS05765 PF06968 Biotin and Thiamin Synthesis associated domain LY388_RS05765 PF04055 Radical SAM superfamily LY388_RS05770 PF01321 Creatinase/Prolidase N-terminal domain LY388_RS05770 PF00557 Metallopeptidase family M24 LY388_RS05770 PF00557 Metallopeptidase family M24 LY388_RS05770 PF01321 Creatinase/Prolidase N-terminal domain LY388_RS05775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS05775 PF03466 LysR substrate binding domain LY388_RS05780 PF07690 Major Facilitator Superfamily LY388_RS05790 PF01037 Lrp/AsnC ligand binding domain LY388_RS05795 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS05795 PF08448 PAS fold LY388_RS05795 PF00563 EAL domain LY388_RS05800 PF04445 Putative SAM-dependent methyltransferase LY388_RS05810 PF00892 EamA-like transporter family LY388_RS05815 PF00582 Universal stress protein family LY388_RS05820 PF00210 Ferritin-like domain LY388_RS05825 PF10625 Universal stress protein B (UspB) LY388_RS05840 PF02646 RmuC family LY388_RS05845 PF01209 ubiE/COQ5 methyltransferase family LY388_RS05850 PF02036 SCP-2 sterol transfer family LY388_RS05855 PF03109 ABC1 family LY388_RS05860 PF02416 mttA/Hcf106 family LY388_RS05865 PF02416 mttA/Hcf106 family LY388_RS05870 PF00902 Sec-independent protein translocase protein (TatC) LY388_RS05875 PF01554 MatE LY388_RS05885 PF00717 Peptidase S24-like LY388_RS05885 PF01726 LexA DNA binding domain LY388_RS05890 PF01553 Acyltransferase LY388_RS05895 PF01040 UbiA prenyltransferase family LY388_RS05900 PF04345 Chorismate lyase LY388_RS05905 PF03748 Flagellar basal body-associated protein FliL LY388_RS05910 PF02203 Tar ligand binding domain homologue LY388_RS05910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS05910 PF00672 HAMP domain LY388_RS05915 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LY388_RS05915 PF01694 Rhomboid family LY388_RS05920 PF00581 Rhodanese-like domain LY388_RS05925 PF01026 TatD related DNase LY388_RS05930 PF00490 Delta-aminolevulinic acid dehydratase LY388_RS05940 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LY388_RS05940 PF00476 DNA polymerase family A LY388_RS05940 PF01612 3'-5' exonuclease LY388_RS05940 PF01367 5'-3' exonuclease, C-terminal SAM fold LY388_RS05945 PF01926 50S ribosome-binding GTPase LY388_RS05950 PF00034 Cytochrome c LY388_RS05960 PF04220 Der GTPase activator (YihI) LY388_RS05965 PF10675 Protein of unknown function (DUF2489) LY388_RS05970 PF04055 Radical SAM superfamily LY388_RS05970 PF06969 HemN C-terminal domain LY388_RS05975 PF07219 HemY protein N-terminus LY388_RS05980 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LY388_RS05985 PF02602 Uroporphyrinogen-III synthase HemD LY388_RS05990 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LY388_RS05990 PF03900 Porphobilinogen deaminase, C-terminal domain LY388_RS05995 PF01295 Adenylate cyclase, class-I LY388_RS05995 PF12633 Adenylate cyclase NT domain LY388_RS06000 PF01491 Frataxin-like domain LY388_RS06010 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LY388_RS06010 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LY388_RS06015 PF01678 Diaminopimelate epimerase LY388_RS06020 PF04340 Protein of unknown function, DUF484 LY388_RS06025 PF02899 Phage integrase, N-terminal SAM-like domain LY388_RS06025 PF00589 Phage integrase family LY388_RS06030 PF13419 Haloacid dehalogenase-like hydrolase LY388_RS06035 PF00563 EAL domain LY388_RS06035 PF08495 FIST N domain LY388_RS06035 PF10442 FIST C domain LY388_RS06035 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS06055 PF12146 Serine aminopeptidase, S33 LY388_RS06060 PF01810 LysE type translocator LY388_RS06065 PF00563 EAL domain LY388_RS06065 PF08668 HDOD domain LY388_RS06070 PF00210 Ferritin-like domain LY388_RS06105 PF02881 SRP54-type protein, helical bundle domain LY388_RS06105 PF00448 SRP54-type protein, GTPase domain LY388_RS06110 PF00005 ABC transporter LY388_RS06115 PF18075 FtsX extracellular domain LY388_RS06120 PF04545 Sigma-70, region 4 LY388_RS06120 PF00140 Sigma-70 factor, region 1.2 LY388_RS06120 PF04542 Sigma-70 region 2 LY388_RS06125 PF07992 Pyridine nucleotide-disulphide oxidoreductase LY388_RS06125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LY388_RS06130 PF00440 Bacterial regulatory proteins, tetR family LY388_RS06140 PF05958 tRNA (Uracil-5-)-methyltransferase LY388_RS06145 PF00593 TonB dependent receptor LY388_RS06145 PF07715 TonB-dependent Receptor Plug Domain LY388_RS06155 PF04151 Bacterial pre-peptidase C-terminal domain LY388_RS06155 PF00082 Subtilase family LY388_RS06155 PF05922 Peptidase inhibitor I9 LY388_RS06160 PF01177 Asp/Glu/Hydantoin racemase LY388_RS06225 PF00962 Adenosine/AMP deaminase LY388_RS06230 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS06230 PF13188 PAS domain LY388_RS06230 PF00563 EAL domain LY388_RS06230 PF03707 Bacterial signalling protein N terminal repeat LY388_RS06235 PF00158 Sigma-54 interaction domain LY388_RS06235 PF02954 Bacterial regulatory protein, Fis family LY388_RS06235 PF00072 Response regulator receiver domain LY388_RS06240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS06240 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS06240 PF00989 PAS fold LY388_RS06250 PF00120 Glutamine synthetase, catalytic domain LY388_RS06250 PF03951 Glutamine synthetase, beta-Grasp domain LY388_RS06260 PF00679 Elongation factor G C-terminus LY388_RS06260 PF00009 Elongation factor Tu GTP binding domain LY388_RS06260 PF03144 Elongation factor Tu domain 2 LY388_RS06270 PF03631 Virulence factor BrkB LY388_RS06275 PF02580 D-Tyr-tRNA(Tyr) deacylase LY388_RS06280 PF09500 Putative thioesterase (yiiD_Cterm) LY388_RS06280 PF00583 Acetyltransferase (GNAT) family LY388_RS06290 PF01293 Phosphoenolpyruvate carboxykinase LY388_RS06295 PF01430 Hsp33 protein LY388_RS06300 PF01479 S4 domain LY388_RS06305 PF11356 Type II secretion system protein C LY388_RS06310 PF00263 Bacterial type II and III secretion system protein LY388_RS06310 PF03958 Bacterial type II/III secretion system short domain LY388_RS06315 PF00437 Type II/IV secretion system protein LY388_RS06320 PF00482 Type II secretion system (T2SS), protein F LY388_RS06325 PF07963 Prokaryotic N-terminal methylation motif LY388_RS06325 PF08334 Type II secretion system (T2SS), protein G LY388_RS06330 PF12019 Type II transport protein GspH LY388_RS06335 PF07963 Prokaryotic N-terminal methylation motif LY388_RS06335 PF02501 Type II secretion system (T2SS), protein I LY388_RS06340 PF07963 Prokaryotic N-terminal methylation motif LY388_RS06340 PF11612 Type II secretion system (T2SS), protein J LY388_RS06345 PF03934 Type II secretion system (T2SS), protein K LY388_RS06350 PF05134 Type II secretion system (T2SS), protein L LY388_RS06350 PF12693 GspL periplasmic domain LY388_RS06355 PF04612 Type II secretion system (T2SS), protein M LY388_RS06360 PF01203 Type II secretion system (T2SS), protein N LY388_RS06365 PF00459 Inositol monophosphatase family LY388_RS06370 PF00293 NUDIX domain LY388_RS06375 PF01521 Iron-sulphur cluster biosynthesis LY388_RS06375 PF01106 NifU-like domain LY388_RS06380 PF00156 Phosphoribosyl transferase domain LY388_RS06390 PF00561 alpha/beta hydrolase fold LY388_RS06400 PF00575 S1 RNA binding domain LY388_RS06400 PF17674 HHH domain LY388_RS06400 PF16921 Tex protein YqgF-like domain LY388_RS06400 PF09371 Tex-like protein N-terminal domain LY388_RS06405 PF01272 Transcription elongation factor, GreA/GreB, C-term LY388_RS06405 PF03449 Transcription elongation factor, N-terminal LY388_RS06410 PF00072 Response regulator receiver domain LY388_RS06410 PF00486 Transcriptional regulatory protein, C terminal LY388_RS06415 PF00672 HAMP domain LY388_RS06415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS06415 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS06420 PF00860 Permease family LY388_RS06425 PF00270 DEAD/DEAH box helicase LY388_RS06425 PF00271 Helicase conserved C-terminal domain LY388_RS06425 PF17191 RecG wedge domain LY388_RS06430 PF13291 ACT domain LY388_RS06430 PF04607 Region found in RelA / SpoT proteins LY388_RS06430 PF02824 TGS domain LY388_RS06435 PF01192 RNA polymerase Rpb6 LY388_RS06440 PF00625 Guanylate kinase LY388_RS06445 PF02592 Putative vitamin uptake transporter LY388_RS06450 PF00474 Sodium:solute symporter family LY388_RS06460 PF03471 Transporter associated domain LY388_RS06460 PF00999 Sodium/hydrogen exchanger family LY388_RS06460 PF02080 TrkA-C domain LY388_RS06465 PF00196 Bacterial regulatory proteins, luxR family LY388_RS06465 PF00072 Response regulator receiver domain LY388_RS06470 PF02683 Cytochrome C biogenesis protein transmembrane region LY388_RS06470 PF11412 Disulphide bond corrector protein DsbC LY388_RS06475 PF17967 Pullulanase N2 domain LY388_RS06475 PF18494 Pullulanase Ins domain LY388_RS06475 PF11852 Domain of unknown function (DUF3372) LY388_RS06475 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LY388_RS06475 PF03714 Bacterial pullanase-associated domain LY388_RS06480 PF03605 Anaerobic c4-dicarboxylate membrane transporter LY388_RS06485 PF00206 Lyase LY388_RS06485 PF10415 Fumarase C C-terminus LY388_RS06490 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS06490 PF17158 Membrane-associated sensor, integral membrane domain LY388_RS06495 PF04186 FxsA cytoplasmic membrane protein LY388_RS06500 PF00588 SpoU rRNA Methylase family LY388_RS06505 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LY388_RS06505 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LY388_RS06510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS06510 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS06510 PF16527 Two-component sensor protein CpxA, periplasmic domain LY388_RS06510 PF00672 HAMP domain LY388_RS06515 PF00072 Response regulator receiver domain LY388_RS06515 PF00486 Transcriptional regulatory protein, C terminal LY388_RS06525 PF01545 Cation efflux family LY388_RS06525 PF16916 Dimerisation domain of Zinc Transporter LY388_RS06530 PF00365 Phosphofructokinase LY388_RS06535 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LY388_RS06540 PF06005 Cell division protein ZapB LY388_RS06545 PF02219 Methylenetetrahydrofolate reductase LY388_RS06550 PF03447 Homoserine dehydrogenase, NAD binding domain LY388_RS06550 PF00696 Amino acid kinase family LY388_RS06550 PF00742 Homoserine dehydrogenase LY388_RS06555 PF01053 Cys/Met metabolism PLP-dependent enzyme LY388_RS06560 PF01340 Met Apo-repressor, MetJ LY388_RS06565 PF00390 Malic enzyme, N-terminal domain LY388_RS06565 PF03949 Malic enzyme, NAD binding domain LY388_RS06570 PF01197 Ribosomal protein L31 LY388_RS06575 PF00270 DEAD/DEAH box helicase LY388_RS06575 PF00271 Helicase conserved C-terminal domain LY388_RS06575 PF17764 3′ DNA-binding domain (3′BD) LY388_RS06575 PF18074 Primosomal protein N C-terminal domain LY388_RS06575 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LY388_RS06580 PF00356 Bacterial regulatory proteins, lacI family LY388_RS06585 PF05036 Sporulation related domain LY388_RS06590 PF00227 Proteasome subunit LY388_RS06595 PF10431 C-terminal, D2-small domain, of ClpB protein LY388_RS06595 PF00004 ATPase family associated with various cellular activities (AAA) LY388_RS06595 PF07724 AAA domain (Cdc48 subfamily) LY388_RS06600 PF01040 UbiA prenyltransferase family LY388_RS06605 PF03737 Aldolase/RraA LY388_RS06610 PF01554 MatE LY388_RS06615 PF00121 Triosephosphate isomerase LY388_RS06635 PF00455 DeoR C terminal sensor domain LY388_RS06635 PF08220 DeoR-like helix-turn-helix domain LY388_RS06640 PF00166 Chaperonin 10 Kd subunit LY388_RS06645 PF00118 TCP-1/cpn60 chaperonin family LY388_RS06655 PF04055 Radical SAM superfamily LY388_RS06660 PF01132 Elongation factor P (EF-P) OB domain LY388_RS06660 PF08207 Elongation factor P (EF-P) KOW-like domain LY388_RS06660 PF09285 Elongation factor P, C-terminal LY388_RS06665 PF02313 Fumarate reductase subunit D LY388_RS06670 PF02300 Fumarate reductase subunit C LY388_RS06675 PF13183 4Fe-4S dicluster domain LY388_RS06675 PF13085 2Fe-2S iron-sulfur cluster binding domain LY388_RS06680 PF00890 FAD binding domain LY388_RS06680 PF02910 Fumarate reductase flavoprotein C-term LY388_RS06685 PF00152 tRNA synthetases class II (D, K and N) LY388_RS06690 PF00581 Rhodanese-like domain LY388_RS06695 PF02556 Preprotein translocase subunit SecB LY388_RS06700 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LY388_RS06700 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LY388_RS06705 PF00132 Bacterial transferase hexapeptide (six repeats) LY388_RS06705 PF06426 Serine acetyltransferase, N-terminal LY388_RS06715 PF00311 Phosphoenolpyruvate carboxylase LY388_RS06720 PF07687 Peptidase dimerisation domain LY388_RS06720 PF01546 Peptidase family M20/M25/M40 LY388_RS06725 PF01118 Semialdehyde dehydrogenase, NAD binding domain LY388_RS06725 PF02774 Semialdehyde dehydrogenase, dimerisation domain LY388_RS06730 PF00696 Amino acid kinase family LY388_RS06735 PF00764 Arginosuccinate synthase LY388_RS06740 PF00206 Lyase LY388_RS06740 PF14698 Argininosuccinate lyase C-terminal LY388_RS06750 PF07992 Pyridine nucleotide-disulphide oxidoreductase LY388_RS06750 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LY388_RS06755 PF00462 Glutaredoxin LY388_RS06755 PF08534 Redoxin LY388_RS06760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS06760 PF03466 LysR substrate binding domain LY388_RS06770 PF17092 Penicillin-binding protein OB-like domain LY388_RS06770 PF00912 Transglycosylase LY388_RS06770 PF00905 Penicillin binding protein transpeptidase domain LY388_RS06790 PF04351 Pilus assembly protein, PilP LY388_RS06795 PF00263 Bacterial type II and III secretion system protein LY388_RS06795 PF03958 Bacterial type II/III secretion system short domain LY388_RS06795 PF07660 Secretin and TonB N terminus short domain LY388_RS06795 PF11741 AMIN domain LY388_RS06800 PF01202 Shikimate kinase LY388_RS06805 PF01761 3-dehydroquinate synthase LY388_RS06815 PF02086 D12 class N6 adenine-specific DNA methyltransferase LY388_RS06820 PF00834 Ribulose-phosphate 3 epimerase family LY388_RS06825 PF13419 Haloacid dehalogenase-like hydrolase LY388_RS06830 PF00579 tRNA synthetases class I (W and Y) LY388_RS06845 PF18693 TRAM domain LY388_RS06845 PF04055 Radical SAM superfamily LY388_RS06845 PF00919 Uncharacterized protein family UPF0004 LY388_RS06850 PF00117 Glutamine amidotransferase class-I LY388_RS06855 PF00202 Aminotransferase class-III LY388_RS06860 PF04958 Arginine N-succinyltransferase beta subunit LY388_RS06865 PF00171 Aldehyde dehydrogenase family LY388_RS06875 PF00027 Cyclic nucleotide-binding domain LY388_RS06875 PF13545 Crp-like helix-turn-helix domain LY388_RS06880 PF00485 Phosphoribulokinase / Uridine kinase family LY388_RS06885 PF06794 Uncharacterised protein family (UPF0270) LY388_RS06890 PF00561 alpha/beta hydrolase fold LY388_RS06900 PF00005 ABC transporter LY388_RS06900 PF12848 ABC transporter LY388_RS06905 PF02525 Flavodoxin-like fold LY388_RS06910 PF00999 Sodium/hydrogen exchanger family LY388_RS06910 PF02254 TrkA-N domain LY388_RS06920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LY388_RS06925 PF01112 Asparaginase LY388_RS06930 PF00709 Adenylosuccinate synthetase LY388_RS06935 PF08238 Sel1 repeat LY388_RS06940 PF00884 Sulfatase LY388_RS06940 PF11893 Domain of unknown function (DUF3413) LY388_RS06945 PF17876 Cold shock domain LY388_RS06945 PF08461 Ribonuclease R winged-helix domain LY388_RS06945 PF08206 Ribonuclease B OB domain LY388_RS06945 PF00773 RNB domain LY388_RS06945 PF00575 S1 RNA binding domain LY388_RS06950 PF08032 RNA 2'-O ribose methyltransferase substrate binding LY388_RS06950 PF00588 SpoU rRNA Methylase family LY388_RS06955 PF00338 Ribosomal protein S10p/S20e LY388_RS06960 PF00297 Ribosomal protein L3 LY388_RS06965 PF00573 Ribosomal protein L4/L1 family LY388_RS06970 PF00276 Ribosomal protein L23 LY388_RS06975 PF00181 Ribosomal Proteins L2, RNA binding domain LY388_RS06975 PF03947 Ribosomal Proteins L2, C-terminal domain LY388_RS06980 PF00203 Ribosomal protein S19 LY388_RS06985 PF00237 Ribosomal protein L22p/L17e LY388_RS06990 PF07650 KH domain LY388_RS06990 PF00189 Ribosomal protein S3, C-terminal domain LY388_RS06995 PF00252 Ribosomal protein L16p/L10e LY388_RS07000 PF00831 Ribosomal L29 protein LY388_RS07005 PF00366 Ribosomal protein S17 LY388_RS07010 PF00238 Ribosomal protein L14p/L23e LY388_RS07015 PF00467 KOW motif LY388_RS07015 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LY388_RS07020 PF00281 Ribosomal protein L5 LY388_RS07020 PF00673 ribosomal L5P family C-terminus LY388_RS07025 PF00253 Ribosomal protein S14p/S29e LY388_RS07030 PF00410 Ribosomal protein S8 LY388_RS07035 PF00347 Ribosomal protein L6 LY388_RS07040 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LY388_RS07045 PF00333 Ribosomal protein S5, N-terminal domain LY388_RS07045 PF03719 Ribosomal protein S5, C-terminal domain LY388_RS07050 PF00327 Ribosomal protein L30p/L7e LY388_RS07055 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LY388_RS07060 PF00344 SecY translocase LY388_RS07065 PF00444 Ribosomal protein L36 LY388_RS07070 PF00416 Ribosomal protein S13/S18 LY388_RS07075 PF00411 Ribosomal protein S11 LY388_RS07080 PF00163 Ribosomal protein S4/S9 N-terminal domain LY388_RS07080 PF01479 S4 domain LY388_RS07085 PF01000 RNA polymerase Rpb3/RpoA insert domain LY388_RS07085 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LY388_RS07085 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LY388_RS07090 PF01196 Ribosomal protein L17 LY388_RS07100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LY388_RS07100 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LY388_RS07105 PF08525 Opacity-associated protein A N-terminal motif LY388_RS07105 PF04225 Opacity-associated protein A LysM-like domain LY388_RS07110 PF00892 EamA-like transporter family LY388_RS07115 PF13673 Acetyltransferase (GNAT) domain LY388_RS07120 PF03880 DbpA RNA binding domain LY388_RS07120 PF00271 Helicase conserved C-terminal domain LY388_RS07120 PF00270 DEAD/DEAH box helicase LY388_RS07130 PF02872 5'-nucleotidase, C-terminal domain LY388_RS07130 PF00149 Calcineurin-like phosphoesterase LY388_RS07135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LY388_RS07135 PF14824 Sirohaem biosynthesis protein central LY388_RS07135 PF10414 Sirohaem synthase dimerisation region LY388_RS07145 PF00009 Elongation factor Tu GTP binding domain LY388_RS07170 PF00005 ABC transporter LY388_RS07180 PF10795 Protein of unknown function (DUF2607) LY388_RS07185 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LY388_RS07190 PF01625 Peptide methionine sulfoxide reductase LY388_RS07195 PF01103 Surface antigen LY388_RS07195 PF17243 POTRA domain TamA domain 1 LY388_RS07195 PF07244 Surface antigen variable number repeat LY388_RS07200 PF04357 TamB, inner membrane protein subunit of TAM complex LY388_RS07205 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LY388_RS07210 PF00719 Inorganic pyrophosphatase LY388_RS07215 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LY388_RS07220 PF08245 Mur ligase middle domain LY388_RS07220 PF01225 Mur ligase family, catalytic domain LY388_RS07220 PF02875 Mur ligase family, glutamate ligase domain LY388_RS07225 PF02441 Flavoprotein LY388_RS07235 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS07240 PF00005 ABC transporter LY388_RS07245 PF04751 Protein of unknown function (DUF615) LY388_RS07250 PF01523 Putative modulator of DNA gyrase LY388_RS07255 PF01769 Divalent cation transporter LY388_RS07255 PF00571 CBS domain LY388_RS07255 PF03448 MgtE intracellular N domain LY388_RS07260 PF00381 PTS HPr component phosphorylation site LY388_RS07265 PF03668 P-loop ATPase protein family LY388_RS07270 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LY388_RS07275 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LY388_RS07280 PF04963 Sigma-54 factor, core binding domain LY388_RS07280 PF04552 Sigma-54, DNA binding domain LY388_RS07280 PF00309 Sigma-54 factor, Activator interacting domain (AID) LY388_RS07285 PF12399 Branched-chain amino acid ATP-binding cassette transporter LY388_RS07285 PF00005 ABC transporter LY388_RS07290 PF03968 OstA-like protein LY388_RS07305 PF00571 CBS domain LY388_RS07305 PF01380 SIS domain LY388_RS07310 PF01699 Sodium/calcium exchanger protein LY388_RS07315 PF00005 ABC transporter LY388_RS07320 PF02405 Permease MlaE LY388_RS07325 PF02470 MlaD protein LY388_RS07330 PF05494 MlaC protein LY388_RS07340 PF01722 BolA-like protein LY388_RS07345 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LY388_RS07350 PF01553 Acyltransferase LY388_RS07355 PF01042 Endoribonuclease L-PSP LY388_RS07360 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LY388_RS07360 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LY388_RS07365 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LY388_RS07365 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LY388_RS07370 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LY388_RS07370 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LY388_RS07375 PF02562 PhoH-like protein LY388_RS07375 PF13638 PIN domain LY388_RS07380 PF00271 Helicase conserved C-terminal domain LY388_RS07380 PF12137 RNA polymerase recycling family C-terminal LY388_RS07380 PF00176 SNF2 family N-terminal domain LY388_RS07380 PF18339 RapA N-terminal Tudor like domain 1 LY388_RS07380 PF18337 RapA N-terminal Tudor like domain LY388_RS07385 PF00849 RNA pseudouridylate synthase LY388_RS07390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LY388_RS07390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LY388_RS07395 PF08264 Anticodon-binding domain of tRNA LY388_RS07395 PF00133 tRNA synthetases class I (I, L, M and V) LY388_RS07395 PF10458 Valyl tRNA synthetase tRNA binding arm LY388_RS07400 PF04364 DNA polymerase III chi subunit, HolC LY388_RS07405 PF00883 Cytosol aminopeptidase family, catalytic domain LY388_RS07405 PF02789 Cytosol aminopeptidase family, N-terminal domain LY388_RS07410 PF03739 Lipopolysaccharide export system permease LptF/LptG LY388_RS07415 PF03739 Lipopolysaccharide export system permease LptF/LptG LY388_RS07430 PF00072 Response regulator receiver domain LY388_RS07475 PF00694 Aconitase C-terminal domain LY388_RS07480 PF00330 Aconitase family (aconitate hydratase) LY388_RS07485 PF00180 Isocitrate/isopropylmalate dehydrogenase LY388_RS07490 PF08502 LeuA allosteric (dimerisation) domain LY388_RS07490 PF00682 HMGL-like LY388_RS07495 PF01569 PAP2 superfamily LY388_RS07505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS07505 PF03466 LysR substrate binding domain LY388_RS07510 PF00501 AMP-binding enzyme LY388_RS07515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LY388_RS07515 PF00205 Thiamine pyrophosphate enzyme, central domain LY388_RS07515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LY388_RS07520 PF10369 Small subunit of acetolactate synthase LY388_RS07525 PF01842 ACT domain LY388_RS07525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LY388_RS07525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LY388_RS07530 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LY388_RS07535 PF01812 5-formyltetrahydrofolate cyclo-ligase family LY388_RS07545 PF05164 Cell division protein ZapA LY388_RS07550 PF03695 Uncharacterised protein family (UPF0149) LY388_RS07555 PF01494 FAD binding domain LY388_RS07560 PF01494 FAD binding domain LY388_RS07575 PF03937 Flavinator of succinate dehydrogenase LY388_RS07585 PF00890 FAD binding domain LY388_RS07585 PF02910 Fumarate reductase flavoprotein C-term LY388_RS07590 PF08281 Sigma-70, region 4 LY388_RS07590 PF04542 Sigma-70 region 2 LY388_RS07595 PF03873 Anti sigma-E protein RseA, C-terminal domain LY388_RS07595 PF03872 Anti sigma-E protein RseA, N-terminal domain LY388_RS07600 PF03888 MucB/RseB N-terminal domain LY388_RS07600 PF17188 MucB/RseB C-terminal domain LY388_RS07610 PF00679 Elongation factor G C-terminus LY388_RS07610 PF00009 Elongation factor Tu GTP binding domain LY388_RS07610 PF03144 Elongation factor Tu domain 2 LY388_RS07610 PF06421 GTP-binding protein LepA C-terminus LY388_RS07615 PF10502 Signal peptidase, peptidase S26 LY388_RS07620 PF14622 Ribonuclease-III-like LY388_RS07620 PF00035 Double-stranded RNA binding motif LY388_RS07625 PF01926 50S ribosome-binding GTPase LY388_RS07625 PF07650 KH domain LY388_RS07630 PF02565 Recombination protein O C terminal LY388_RS07630 PF11967 Recombination protein O N terminal LY388_RS07635 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LY388_RS07640 PF01648 4'-phosphopantetheinyl transferase superfamily LY388_RS07655 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS07660 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LY388_RS07660 PF00672 HAMP domain LY388_RS07660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS07660 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS07660 PF01627 Hpt domain LY388_RS07660 PF00072 Response regulator receiver domain LY388_RS07665 PF05958 tRNA (Uracil-5-)-methyltransferase LY388_RS07665 PF01938 TRAM domain LY388_RS07670 PF13291 ACT domain LY388_RS07670 PF04607 Region found in RelA / SpoT proteins LY388_RS07670 PF02824 TGS domain LY388_RS07675 PF03819 MazG nucleotide pyrophosphohydrolase domain LY388_RS07680 PF06418 CTP synthase N-terminus LY388_RS07680 PF00117 Glutamine amidotransferase class-I LY388_RS07685 PF00113 Enolase, C-terminal TIM barrel domain LY388_RS07685 PF03952 Enolase, N-terminal domain LY388_RS07690 PF01966 HD domain LY388_RS07690 PF01743 Poly A polymerase head domain LY388_RS07690 PF12627 Probable RNA and SrmB- binding site of polymerase A LY388_RS07695 PF13401 AAA domain LY388_RS07695 PF01471 Putative peptidoglycan binding domain LY388_RS07705 PF08239 Bacterial SH3 domain LY388_RS07710 PF01384 Phosphate transporter family LY388_RS07715 PF01865 Protein of unknown function DUF47 LY388_RS07720 PF01928 CYTH domain LY388_RS07725 PF02743 Cache domain LY388_RS07725 PF00672 HAMP domain LY388_RS07725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS07730 PF03710 Glutamate-ammonia ligase adenylyltransferase LY388_RS07730 PF08335 GlnD PII-uridylyltransferase LY388_RS07735 PF01467 Cytidylyltransferase-like LY388_RS07735 PF00294 pfkB family carbohydrate kinase LY388_RS07740 PF02321 Outer membrane efflux protein LY388_RS07745 PF00293 NUDIX domain LY388_RS07750 PF06853 Protein of unknown function (DUF1249) LY388_RS07755 PF00149 Calcineurin-like phosphoesterase LY388_RS07760 PF05728 Uncharacterised protein family (UPF0227) LY388_RS07765 PF01751 Toprim domain LY388_RS07765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS07765 PF00204 DNA gyrase B LY388_RS07765 PF00986 DNA gyrase B subunit, carboxyl terminus LY388_RS07770 PF00521 DNA gyrase/topoisomerase IV, subunit A LY388_RS07770 PF03989 DNA gyrase C-terminal domain, beta-propeller LY388_RS07775 PF03884 DNA gyrase inhibitor YacG LY388_RS07780 PF07072 Cell division protein LY388_RS07785 PF01121 Dephospho-CoA kinase LY388_RS07790 PF06750 Bacterial Peptidase A24 N-terminal domain LY388_RS07790 PF01478 Type IV leader peptidase family LY388_RS07795 PF00482 Type II secretion system (T2SS), protein F LY388_RS07800 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LY388_RS07800 PF00437 Type II/IV secretion system protein LY388_RS07805 PF07963 Prokaryotic N-terminal methylation motif LY388_RS07805 PF00114 Pilin (bacterial filament) LY388_RS07810 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LY388_RS07810 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LY388_RS07815 PF01510 N-acetylmuramoyl-L-alanine amidase LY388_RS07820 PF00258 Flavodoxin LY388_RS07825 PF02899 Phage integrase, N-terminal SAM-like domain LY388_RS07825 PF00589 Phage integrase family LY388_RS07830 PF13098 Thioredoxin-like domain LY388_RS07830 PF10411 Disulfide bond isomerase protein N-terminus LY388_RS07835 PF02272 DHHA1 domain LY388_RS07835 PF17768 RecJ OB domain LY388_RS07835 PF01368 DHH family LY388_RS07840 PF00149 Calcineurin-like phosphoesterase LY388_RS07840 PF02872 5'-nucleotidase, C-terminal domain LY388_RS07845 PF07729 FCD domain LY388_RS07845 PF00392 Bacterial regulatory proteins, gntR family LY388_RS07850 PF00456 Transketolase, thiamine diphosphate binding domain LY388_RS07850 PF17831 Pyruvate dehydrogenase E1 component middle domain LY388_RS07855 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LY388_RS07855 PF00364 Biotin-requiring enzyme LY388_RS07855 PF02817 e3 binding domain LY388_RS07860 PF07992 Pyridine nucleotide-disulphide oxidoreductase LY388_RS07860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LY388_RS07870 PF01795 MraW methylase family LY388_RS07875 PF04999 Cell division protein FtsL LY388_RS07880 PF00905 Penicillin binding protein transpeptidase domain LY388_RS07880 PF03717 Penicillin-binding Protein dimerisation domain LY388_RS07885 PF01225 Mur ligase family, catalytic domain LY388_RS07885 PF02875 Mur ligase family, glutamate ligase domain LY388_RS07885 PF08245 Mur ligase middle domain LY388_RS07890 PF01225 Mur ligase family, catalytic domain LY388_RS07890 PF02875 Mur ligase family, glutamate ligase domain LY388_RS07890 PF08245 Mur ligase middle domain LY388_RS07895 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LY388_RS07895 PF00953 Glycosyl transferase family 4 LY388_RS07900 PF08245 Mur ligase middle domain LY388_RS07900 PF02875 Mur ligase family, glutamate ligase domain LY388_RS07905 PF01098 Cell cycle protein LY388_RS07910 PF04101 Glycosyltransferase family 28 C-terminal domain LY388_RS07910 PF03033 Glycosyltransferase family 28 N-terminal domain LY388_RS07915 PF01225 Mur ligase family, catalytic domain LY388_RS07915 PF02875 Mur ligase family, glutamate ligase domain LY388_RS07915 PF08245 Mur ligase middle domain LY388_RS07920 PF03799 Cell division protein FtsQ LY388_RS07920 PF08478 POTRA domain, FtsQ-type LY388_RS07925 PF02491 SHS2 domain inserted in FTSA LY388_RS07930 PF12327 FtsZ family, C-terminal domain LY388_RS07930 PF00091 Tubulin/FtsZ family, GTPase domain LY388_RS07935 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LY388_RS07945 PF07517 SecA DEAD-like domain LY388_RS07945 PF02810 SEC-C motif LY388_RS07945 PF07516 SecA Wing and Scaffold domain LY388_RS07945 PF01043 SecA preprotein cross-linking domain LY388_RS07950 PF00293 NUDIX domain LY388_RS07955 PF05173 Dihydrodipicolinate reductase, C-terminus LY388_RS07955 PF01113 Dihydrodipicolinate reductase, N-terminus LY388_RS07965 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LY388_RS07965 PF00117 Glutamine amidotransferase class-I LY388_RS07970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LY388_RS07970 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LY388_RS07970 PF02142 MGS-like domain LY388_RS07985 PF01925 Sulfite exporter TauE/SafE LY388_RS07990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS07990 PF03466 LysR substrate binding domain LY388_RS07995 PF03458 UPF0126 domain LY388_RS08000 PF01497 Periplasmic binding protein LY388_RS08010 PF01048 Phosphorylase superfamily LY388_RS08020 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LY388_RS08020 PF07992 Pyridine nucleotide-disulphide oxidoreductase LY388_RS08025 PF01493 GXGXG motif LY388_RS08025 PF01645 Conserved region in glutamate synthase LY388_RS08025 PF04898 Glutamate synthase central domain LY388_RS08025 PF00310 Glutamine amidotransferases class-II LY388_RS08030 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LY388_RS08030 PF07992 Pyridine nucleotide-disulphide oxidoreductase LY388_RS08035 PF00310 Glutamine amidotransferases class-II LY388_RS08035 PF04898 Glutamate synthase central domain LY388_RS08035 PF01645 Conserved region in glutamate synthase LY388_RS08035 PF01493 GXGXG motif LY388_RS08040 PF04055 Radical SAM superfamily LY388_RS08040 PF16199 Radical_SAM C-terminal domain LY388_RS08045 PF00563 EAL domain LY388_RS08045 PF01590 GAF domain LY388_RS08045 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS08045 PF00360 Phytochrome region LY388_RS08050 PF01627 Hpt domain LY388_RS08050 PF18415 Histidine kinase receptor ArcB trans-membrane domain LY388_RS08050 PF00072 Response regulator receiver domain LY388_RS08050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS08050 PF00989 PAS fold LY388_RS08050 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS08055 PF00486 Transcriptional regulatory protein, C terminal LY388_RS08055 PF00072 Response regulator receiver domain LY388_RS08065 PF03737 Aldolase/RraA LY388_RS08080 PF00696 Amino acid kinase family LY388_RS08080 PF01842 ACT domain LY388_RS08080 PF00742 Homoserine dehydrogenase LY388_RS08080 PF13840 ACT domain LY388_RS08080 PF03447 Homoserine dehydrogenase, NAD binding domain LY388_RS08085 PF08544 GHMP kinases C terminal LY388_RS08085 PF00288 GHMP kinases N terminal domain LY388_RS08090 PF00291 Pyridoxal-phosphate dependent enzyme LY388_RS08090 PF14821 Threonine synthase N terminus LY388_RS08095 PF01228 Glycine radical LY388_RS08100 PF01261 Xylose isomerase-like TIM barrel LY388_RS08105 PF03167 Uracil DNA glycosylase superfamily LY388_RS08120 PF01235 Sodium:alanine symporter family LY388_RS08125 PF03883 Peroxide stress protein YaaA LY388_RS08135 PF01026 TatD related DNase LY388_RS08140 PF07662 Na+ dependent nucleoside transporter C-terminus LY388_RS08140 PF07670 Nucleoside recognition LY388_RS08140 PF01773 Na+ dependent nucleoside transporter N-terminus LY388_RS08150 PF01791 DeoC/LacD family aldolase LY388_RS08155 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LY388_RS08155 PF02885 Glycosyl transferase family, helical bundle domain LY388_RS08155 PF00591 Glycosyl transferase family, a/b domain LY388_RS08160 PF01676 Metalloenzyme superfamily LY388_RS08165 PF01048 Phosphorylase superfamily LY388_RS08175 PF18429 Domain of unknown function (DUF5609) LY388_RS08185 PF18073 Rubredoxin metal binding domain LY388_RS08190 PF03764 Elongation factor G, domain IV LY388_RS08190 PF14492 Elongation Factor G, domain II LY388_RS08190 PF00679 Elongation factor G C-terminus LY388_RS08190 PF03144 Elongation factor Tu domain 2 LY388_RS08190 PF00009 Elongation factor Tu GTP binding domain LY388_RS08195 PF00501 AMP-binding enzyme LY388_RS08200 PF00072 Response regulator receiver domain LY388_RS08210 PF02837 Glycosyl hydrolases family 2, sugar binding domain LY388_RS08210 PF02929 Beta galactosidase small chain LY388_RS08210 PF00703 Glycosyl hydrolases family 2 LY388_RS08210 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LY388_RS08210 PF16353 Domain of unknown function(DUF4981) LY388_RS08215 PF00356 Bacterial regulatory proteins, lacI family LY388_RS08220 PF01588 Putative tRNA binding domain LY388_RS08230 PF01544 CorA-like Mg2+ transporter protein LY388_RS08235 PF02080 TrkA-C domain LY388_RS08235 PF18030 RimK PreATP-grasp domain LY388_RS08235 PF08443 RimK-like ATP-grasp domain LY388_RS08240 PF00583 Acetyltransferase (GNAT) family LY388_RS08250 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle LY388_RS08250 PF14602 Hexapeptide repeat of succinyl-transferase LY388_RS08255 PF07130 YebG protein LY388_RS08270 PF17946 RecC C-terminal domain LY388_RS08275 PF12705 PD-(D/E)XK nuclease superfamily LY388_RS08275 PF00580 UvrD/REP helicase N-terminal domain LY388_RS08275 PF13361 UvrD-like helicase C-terminal domain LY388_RS08280 PF13538 UvrD-like helicase C-terminal domain LY388_RS08290 PF00583 Acetyltransferase (GNAT) family LY388_RS08290 PF00696 Amino acid kinase family LY388_RS08300 PF03562 MltA specific insert domain LY388_RS08300 PF06725 3D domain LY388_RS08305 PF00899 ThiF family LY388_RS08310 PF02657 Fe-S metabolism associated domain LY388_RS08315 PF00266 Aminotransferase class-V LY388_RS08320 PF01965 DJ-1/PfpI family LY388_RS08325 PF08546 Ketopantoate reductase PanE/ApbA C terminal LY388_RS08325 PF02558 Ketopantoate reductase PanE/ApbA LY388_RS08340 PF04542 Sigma-70 region 2 LY388_RS08340 PF04545 Sigma-70, region 4 LY388_RS08350 PF07690 Major Facilitator Superfamily LY388_RS08355 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LY388_RS08365 PF05175 Methyltransferase small domain LY388_RS08370 PF01722 BolA-like protein LY388_RS08375 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LY388_RS08375 PF11973 NQRA C-terminal domain LY388_RS08380 PF03116 NQR2, RnfD, RnfE family LY388_RS08385 PF04205 FMN-binding domain LY388_RS08390 PF02508 Rnf-Nqr subunit, membrane protein LY388_RS08395 PF02508 Rnf-Nqr subunit, membrane protein LY388_RS08400 PF00970 Oxidoreductase FAD-binding domain LY388_RS08400 PF00111 2Fe-2S iron-sulfur cluster binding domain LY388_RS08400 PF00175 Oxidoreductase NAD-binding domain LY388_RS08405 PF02424 ApbE family LY388_RS08415 PF00817 impB/mucB/samB family LY388_RS08415 PF11798 IMS family HHH motif LY388_RS08425 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS08425 PF17158 Membrane-associated sensor, integral membrane domain LY388_RS08430 PF00209 Sodium:neurotransmitter symporter family LY388_RS08440 PF08443 RimK-like ATP-grasp domain LY388_RS08440 PF18030 RimK PreATP-grasp domain LY388_RS08445 PF08443 RimK-like ATP-grasp domain LY388_RS08445 PF18030 RimK PreATP-grasp domain LY388_RS08450 PF01546 Peptidase family M20/M25/M40 LY388_RS08450 PF07687 Peptidase dimerisation domain LY388_RS08455 PF00860 Permease family LY388_RS08460 PF00156 Phosphoribosyl transferase domain LY388_RS08465 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LY388_RS08470 PF07417 Sigma factor-binding transcriptional regulator Crl LY388_RS08475 PF01472 PUA domain LY388_RS08475 PF00696 Amino acid kinase family LY388_RS08480 PF00171 Aldehyde dehydrogenase family LY388_RS08485 PF03477 ATP cone domain LY388_RS08490 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LY388_RS08490 PF01872 RibD C-terminal domain LY388_RS08495 PF00677 Lumazine binding domain LY388_RS08500 PF00925 GTP cyclohydrolase II LY388_RS08500 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LY388_RS08505 PF00885 6,7-dimethyl-8-ribityllumazine synthase LY388_RS08510 PF01029 NusB family LY388_RS08515 PF00586 AIR synthase related protein, N-terminal domain LY388_RS08515 PF02769 AIR synthase related protein, C-terminal domain LY388_RS08520 PF04608 Phosphatidylglycerophosphatase A LY388_RS08525 PF11944 Protein of unknown function (DUF3461) LY388_RS08530 PF01909 Nucleotidyltransferase domain LY388_RS08530 PF01966 HD domain LY388_RS08530 PF08335 GlnD PII-uridylyltransferase LY388_RS08535 PF00557 Metallopeptidase family M24 LY388_RS08540 PF00318 Ribosomal protein S2 LY388_RS08545 PF00889 Elongation factor TS LY388_RS08550 PF00696 Amino acid kinase family LY388_RS08555 PF01765 Ribosome recycling factor LY388_RS08560 PF01255 Putative undecaprenyl diphosphate synthase LY388_RS08570 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LY388_RS08570 PF13288 DXP reductoisomerase C-terminal domain LY388_RS08570 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LY388_RS08575 PF17820 PDZ domain LY388_RS08575 PF02163 Peptidase family M50 LY388_RS08580 PF01103 Surface antigen LY388_RS08580 PF07244 Surface antigen variable number repeat LY388_RS08585 PF03938 Outer membrane protein (OmpH-like) LY388_RS08590 PF00132 Bacterial transferase hexapeptide (six repeats) LY388_RS08590 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LY388_RS08595 PF07977 FabA-like domain LY388_RS08600 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LY388_RS08600 PF00132 Bacterial transferase hexapeptide (six repeats) LY388_RS08605 PF02684 Lipid-A-disaccharide synthetase LY388_RS08610 PF01351 Ribonuclease HII LY388_RS08615 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LY388_RS08615 PF14579 Helix-hairpin-helix motif LY388_RS08615 PF07733 Bacterial DNA polymerase III alpha NTPase domain LY388_RS08615 PF02811 PHP domain LY388_RS08615 PF01336 OB-fold nucleic acid binding domain LY388_RS08620 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LY388_RS08625 PF01171 PP-loop family LY388_RS08625 PF09179 TilS substrate binding domain LY388_RS08625 PF11734 TilS substrate C-terminal domain LY388_RS08630 PF00034 Cytochrome c LY388_RS08635 PF05870 Phenolic acid decarboxylase (PAD) LY388_RS08640 PF00543 Nitrogen regulatory protein P-II LY388_RS08645 PF03372 Endonuclease/Exonuclease/phosphatase family LY388_RS08650 PF01476 LysM domain LY388_RS08650 PF01464 Transglycosylase SLT domain LY388_RS08655 PF00753 Metallo-beta-lactamase superfamily LY388_RS08655 PF16123 Hydroxyacylglutathione hydrolase C-terminus LY388_RS08660 PF08241 Methyltransferase domain LY388_RS08665 PF00075 RNase H LY388_RS08670 PF00929 Exonuclease LY388_RS08680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LY388_RS08680 PF02770 Acyl-CoA dehydrogenase, middle domain LY388_RS08680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LY388_RS08680 PF09317 Domain of unknown function (DUF1974) LY388_RS08685 PF13580 SIS domain LY388_RS08690 PF13230 Glutamine amidotransferases class-II LY388_RS08695 PF00551 Formyl transferase LY388_RS08700 PF00586 AIR synthase related protein, N-terminal domain LY388_RS08700 PF02769 AIR synthase related protein, C-terminal domain LY388_RS08710 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS08715 PF00849 RNA pseudouridylate synthase LY388_RS08715 PF01479 S4 domain LY388_RS08720 PF01713 Smr domain LY388_RS08740 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LY388_RS08740 PF00728 Glycosyl hydrolase family 20, catalytic domain LY388_RS08740 PF03173 Putative carbohydrate binding domain LY388_RS08740 PF02838 Glycosyl hydrolase family 20, domain 2 LY388_RS08750 PF00403 Heavy-metal-associated domain LY388_RS08755 PF00749 tRNA synthetases class I (E and Q), catalytic domain LY388_RS08760 PF00691 OmpA family LY388_RS08760 PF01389 OmpA-like transmembrane domain LY388_RS08775 PF07715 TonB-dependent Receptor Plug Domain LY388_RS08780 PF08021 Siderophore-interacting FAD-binding domain LY388_RS08780 PF04954 Siderophore-interacting protein LY388_RS08785 PF00501 AMP-binding enzyme LY388_RS08785 PF00668 Condensation domain LY388_RS08785 PF08242 Methyltransferase domain LY388_RS08785 PF00550 Phosphopantetheine attachment site LY388_RS08820 PF01584 CheW-like domain LY388_RS08820 PF00072 Response regulator receiver domain LY388_RS08825 PF01739 CheR methyltransferase, SAM binding domain LY388_RS08825 PF03705 CheR methyltransferase, all-alpha domain LY388_RS08830 PF00460 Flagella basal body rod protein LY388_RS08835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LY388_RS08835 PF00460 Flagella basal body rod protein LY388_RS08840 PF03963 Flagellar hook capping protein - N-terminal region LY388_RS08840 PF13861 FlgD Tudor-like domain LY388_RS08840 PF13860 FlgD Ig-like domain LY388_RS08845 PF00460 Flagella basal body rod protein LY388_RS08845 PF07559 Flagellar basal body protein FlaE LY388_RS08845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LY388_RS08850 PF00460 Flagella basal body rod protein LY388_RS08850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LY388_RS08855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LY388_RS08855 PF00460 Flagella basal body rod protein LY388_RS08860 PF02107 Flagellar L-ring protein LY388_RS08865 PF02119 Flagellar P-ring protein LY388_RS08870 PF10135 Rod binding protein LY388_RS08870 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LY388_RS08875 PF07196 Flagellin hook IN motif LY388_RS08875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LY388_RS08885 PF07196 Flagellin hook IN motif LY388_RS08885 PF00669 Bacterial flagellin N-terminal helical region LY388_RS08885 PF00700 Bacterial flagellin C-terminal helical region LY388_RS08890 PF00700 Bacterial flagellin C-terminal helical region LY388_RS08890 PF00669 Bacterial flagellin N-terminal helical region LY388_RS08890 PF07196 Flagellin hook IN motif LY388_RS08895 PF01797 Transposase IS200 like LY388_RS08980 PF01926 50S ribosome-binding GTPase LY388_RS08980 PF06071 Protein of unknown function (DUF933) LY388_RS08985 PF01195 Peptidyl-tRNA hydrolase LY388_RS08990 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LY388_RS08990 PF14572 Phosphoribosyl synthetase-associated domain LY388_RS08995 PF00288 GHMP kinases N terminal domain LY388_RS08995 PF08544 GHMP kinases C terminal LY388_RS09000 PF03550 Outer membrane lipoprotein LolB LY388_RS09005 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LY388_RS09005 PF01488 Shikimate / quinate 5-dehydrogenase LY388_RS09005 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LY388_RS09010 PF03462 PCRF domain LY388_RS09010 PF00472 RF-1 domain LY388_RS09015 PF13847 Methyltransferase domain LY388_RS09015 PF17827 PrmC N-terminal domain LY388_RS09020 PF04247 Invasion gene expression up-regulator, SirB LY388_RS09025 PF13369 Transglutaminase-like superfamily LY388_RS09030 PF00793 DAHP synthetase I family LY388_RS09035 PF00149 Calcineurin-like phosphoesterase LY388_RS09035 PF02872 5'-nucleotidase, C-terminal domain LY388_RS09040 PF04073 Aminoacyl-tRNA editing domain LY388_RS09045 PF00860 Permease family LY388_RS09055 PF01797 Transposase IS200 like LY388_RS09065 PF03358 NADPH-dependent FMN reductase LY388_RS09070 PF03960 ArsC family LY388_RS09075 PF13181 Tetratricopeptide repeat LY388_RS09075 PF01435 Peptidase family M48 LY388_RS09085 PF01594 AI-2E family transporter LY388_RS09090 PF00672 HAMP domain LY388_RS09090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS09090 PF02743 Cache domain LY388_RS09095 PF00578 AhpC/TSA family LY388_RS09105 PF00701 Dihydrodipicolinate synthetase family LY388_RS09110 PF06804 NlpB/DapX lipoprotein LY388_RS09120 PF02557 D-alanyl-D-alanine carboxypeptidase LY388_RS09125 PF07687 Peptidase dimerisation domain LY388_RS09125 PF01546 Peptidase family M20/M25/M40 LY388_RS09130 PF03960 ArsC family LY388_RS09145 PF11143 Protein of unknown function (DUF2919) LY388_RS09150 PF04261 Dyp-type peroxidase family LY388_RS09155 PF07196 Flagellin hook IN motif LY388_RS09155 PF00669 Bacterial flagellin N-terminal helical region LY388_RS09155 PF00700 Bacterial flagellin C-terminal helical region LY388_RS09160 PF00700 Bacterial flagellin C-terminal helical region LY388_RS09160 PF07196 Flagellin hook IN motif LY388_RS09160 PF00669 Bacterial flagellin N-terminal helical region LY388_RS09165 PF07196 Flagellin hook IN motif LY388_RS09165 PF00669 Bacterial flagellin N-terminal helical region LY388_RS09165 PF00700 Bacterial flagellin C-terminal helical region LY388_RS09170 PF03646 FlaG protein LY388_RS09175 PF02465 Flagellar hook-associated protein 2 N-terminus LY388_RS09175 PF07195 Flagellar hook-associated protein 2 C-terminus LY388_RS09175 PF07196 Flagellin hook IN motif LY388_RS09185 PF02561 Flagellar protein FliS LY388_RS09190 PF06490 Flagellar regulatory protein FleQ LY388_RS09190 PF00158 Sigma-54 interaction domain LY388_RS09190 PF02954 Bacterial regulatory protein, Fis family LY388_RS09195 PF13188 PAS domain LY388_RS09195 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS09195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS09200 PF00158 Sigma-54 interaction domain LY388_RS09200 PF00072 Response regulator receiver domain LY388_RS09200 PF02954 Bacterial regulatory protein, Fis family LY388_RS09205 PF02049 Flagellar hook-basal body complex protein FliE LY388_RS09210 PF08345 Flagellar M-ring protein C-terminal LY388_RS09210 PF01514 Secretory protein of YscJ/FliF family LY388_RS09215 PF01706 FliG C-terminal domain LY388_RS09215 PF14841 FliG middle domain LY388_RS09215 PF14842 FliG N-terminal domain LY388_RS09220 PF02108 Flagellar assembly protein FliH LY388_RS09225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LY388_RS09225 PF18269 T3SS EscN ATPase C-terminal domain LY388_RS09245 PF03748 Flagellar basal body-associated protein FliL LY388_RS09250 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LY388_RS09250 PF02154 Flagellar motor switch protein FliM LY388_RS09255 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LY388_RS09260 PF04347 Flagellar biosynthesis protein, FliO LY388_RS09265 PF00813 FliP family LY388_RS09270 PF01313 Bacterial export proteins, family 3 LY388_RS09275 PF01311 Bacterial export proteins, family 1 LY388_RS09280 PF01312 FlhB HrpN YscU SpaS Family LY388_RS09285 PF01713 Smr domain LY388_RS09290 PF05175 Methyltransferase small domain LY388_RS09295 PF01264 Chorismate synthase LY388_RS09300 PF03458 UPF0126 domain LY388_RS09305 PF04315 Elongation factor P hydroxylase LY388_RS09310 PF08891 YfcL protein LY388_RS09315 PF03358 NADPH-dependent FMN reductase LY388_RS09320 PF01266 FAD dependent oxidoreductase LY388_RS09320 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LY388_RS09325 PF02801 Beta-ketoacyl synthase, C-terminal domain LY388_RS09325 PF00109 Beta-ketoacyl synthase, N-terminal domain LY388_RS09330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LY388_RS09330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LY388_RS09330 PF11890 Domain of unknown function (DUF3410) LY388_RS09335 PF02774 Semialdehyde dehydrogenase, dimerisation domain LY388_RS09335 PF01118 Semialdehyde dehydrogenase, NAD binding domain LY388_RS09340 PF01475 Ferric uptake regulator family LY388_RS09350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS09350 PF03466 LysR substrate binding domain LY388_RS09355 PF03788 LrgA family LY388_RS09360 PF04172 LrgB-like family LY388_RS09365 PF00258 Flavodoxin LY388_RS09375 PF12697 Alpha/beta hydrolase family LY388_RS09380 PF03925 SeqA protein C-terminal domain LY388_RS09380 PF17206 SeqA protein N-terminal domain LY388_RS09385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LY388_RS09385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LY388_RS09385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LY388_RS09385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LY388_RS09395 PF01784 NIF3 (NGG1p interacting factor 3) LY388_RS09400 PF00285 Citrate synthase, C-terminal domain LY388_RS09405 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LY388_RS09410 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LY388_RS09415 PF00890 FAD binding domain LY388_RS09415 PF02910 Fumarate reductase flavoprotein C-term LY388_RS09420 PF13085 2Fe-2S iron-sulfur cluster binding domain LY388_RS09425 PF16078 2-oxoglutarate dehydrogenase N-terminus LY388_RS09425 PF00676 Dehydrogenase E1 component LY388_RS09425 PF16870 2-oxoglutarate dehydrogenase C-terminal LY388_RS09425 PF02779 Transketolase, pyrimidine binding domain LY388_RS09430 PF00364 Biotin-requiring enzyme LY388_RS09430 PF02817 e3 binding domain LY388_RS09430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LY388_RS09435 PF08442 ATP-grasp domain LY388_RS09435 PF00549 CoA-ligase LY388_RS09440 PF00549 CoA-ligase LY388_RS09440 PF02629 CoA binding domain LY388_RS09445 PF00950 ABC 3 transport family LY388_RS09450 PF00005 ABC transporter LY388_RS09455 PF01297 Zinc-uptake complex component A periplasmic LY388_RS09460 PF02311 AraC-like ligand binding domain LY388_RS09460 PF12833 Helix-turn-helix domain LY388_RS09465 PF04023 FeoA domain LY388_RS09470 PF07670 Nucleoside recognition LY388_RS09470 PF07664 Ferrous iron transport protein B C terminus LY388_RS09470 PF02421 Ferrous iron transport protein B LY388_RS09485 PF03485 Arginyl tRNA synthetase N terminal domain LY388_RS09485 PF05746 DALR anticodon binding domain LY388_RS09485 PF00750 tRNA synthetases class I (R) LY388_RS09495 PF00675 Insulinase (Peptidase family M16) LY388_RS09495 PF05193 Peptidase M16 inactive domain LY388_RS09500 PF00300 Histidine phosphatase superfamily (branch 1) LY388_RS09505 PF00771 FHIPEP family LY388_RS09510 PF00448 SRP54-type protein, GTPase domain LY388_RS09515 PF10609 NUBPL iron-transfer P-loop NTPase LY388_RS09520 PF04542 Sigma-70 region 2 LY388_RS09520 PF04539 Sigma-70 region 3 LY388_RS09520 PF04545 Sigma-70, region 4 LY388_RS09525 PF00072 Response regulator receiver domain LY388_RS09530 PF04344 Chemotaxis phosphatase, CheZ LY388_RS09535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS09535 PF01627 Hpt domain LY388_RS09535 PF00072 Response regulator receiver domain LY388_RS09535 PF02895 Signal transducing histidine kinase, homodimeric domain LY388_RS09535 PF01584 CheW-like domain LY388_RS09540 PF00072 Response regulator receiver domain LY388_RS09540 PF01339 CheB methylesterase LY388_RS09545 PF13614 AAA domain LY388_RS09555 PF01584 CheW-like domain LY388_RS09565 PF00005 ABC transporter LY388_RS09570 PF03379 CcmB protein LY388_RS09575 PF01578 Cytochrome C assembly protein LY388_RS09580 PF04995 Heme exporter protein D (CcmD) LY388_RS09585 PF03100 CcmE LY388_RS09590 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LY388_RS09590 PF01578 Cytochrome C assembly protein LY388_RS09595 PF08534 Redoxin LY388_RS09600 PF03918 Cytochrome C biogenesis protein LY388_RS09610 PF04333 MlaA lipoprotein LY388_RS09625 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LY388_RS09625 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LY388_RS09630 PF00462 Glutaredoxin LY388_RS09635 PF01131 DNA topoisomerase LY388_RS09635 PF01751 Toprim domain LY388_RS09640 PF00850 Histone deacetylase domain LY388_RS09655 PF11893 Domain of unknown function (DUF3413) LY388_RS09655 PF00884 Sulfatase LY388_RS09660 PF07208 Protein of unknown function (DUF1414) LY388_RS09665 PF04245 37-kD nucleoid-associated bacterial protein LY388_RS09675 PF03553 Na+/H+ antiporter family LY388_RS09680 PF01118 Semialdehyde dehydrogenase, NAD binding domain LY388_RS09680 PF02774 Semialdehyde dehydrogenase, dimerisation domain LY388_RS09685 PF01914 MarC family integral membrane protein LY388_RS09690 PF00171 Aldehyde dehydrogenase family LY388_RS09690 PF00465 Iron-containing alcohol dehydrogenase LY388_RS09700 PF01740 STAS domain LY388_RS09700 PF00916 Sulfate permease family LY388_RS09705 PF12111 Polyribonucleotide phosphorylase C terminal LY388_RS09705 PF10150 Ribonuclease E/G family LY388_RS09705 PF00575 S1 RNA binding domain LY388_RS09710 PF00849 RNA pseudouridylate synthase LY388_RS09710 PF01479 S4 domain LY388_RS09715 PF02545 Maf-like protein LY388_RS09720 PF02620 Large ribosomal RNA subunit accumulation protein YceD LY388_RS09725 PF01783 Ribosomal L32p protein family LY388_RS09730 PF02504 Fatty acid synthesis protein LY388_RS09735 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LY388_RS09735 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LY388_RS09740 PF00698 Acyl transferase domain LY388_RS09750 PF00550 Phosphopantetheine attachment site LY388_RS09755 PF00109 Beta-ketoacyl synthase, N-terminal domain LY388_RS09755 PF02801 Beta-ketoacyl synthase, C-terminal domain LY388_RS09760 PF01063 Amino-transferase class IV LY388_RS09765 PF02618 YceG-like family LY388_RS09770 PF02223 Thymidylate kinase LY388_RS09775 PF09115 DNA polymerase III, delta subunit, C terminal LY388_RS09780 PF01026 TatD related DNase LY388_RS09785 PF00367 phosphotransferase system, EIIB LY388_RS09785 PF02378 Phosphotransferase system, EIIC LY388_RS09795 PF00209 Sodium:neurotransmitter symporter family LY388_RS09810 PF01734 Patatin-like phospholipase LY388_RS09815 PF02887 Pyruvate kinase, alpha/beta domain LY388_RS09815 PF00224 Pyruvate kinase, barrel domain LY388_RS09820 PF00480 ROK family LY388_RS09825 PF01584 CheW-like domain LY388_RS09825 PF00072 Response regulator receiver domain LY388_RS09840 PF13847 Methyltransferase domain LY388_RS09850 PF01263 Aldose 1-epimerase LY388_RS09855 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LY388_RS09855 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LY388_RS09860 PF01641 SelR domain LY388_RS09870 PF07023 Protein of unknown function (DUF1315) LY388_RS09875 PF00710 Asparaginase, N-terminal LY388_RS09875 PF17763 Glutaminase/Asparaginase C-terminal domain LY388_RS09880 PF01343 Peptidase family S49 LY388_RS09885 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LY388_RS09885 PF07992 Pyridine nucleotide-disulphide oxidoreductase LY388_RS09890 PF00551 Formyl transferase LY388_RS09890 PF01842 ACT domain LY388_RS09900 PF13307 Helicase C-terminal domain LY388_RS09900 PF04851 Type III restriction enzyme, res subunit LY388_RS09905 PF00814 Glycoprotease family LY388_RS09920 PF00561 alpha/beta hydrolase fold LY388_RS09925 PF00501 AMP-binding enzyme LY388_RS09925 PF13193 AMP-binding enzyme C-terminal domain LY388_RS09930 PF01612 3'-5' exonuclease LY388_RS09930 PF00570 HRDC domain LY388_RS09950 PF01966 HD domain LY388_RS09950 PF13286 Phosphohydrolase-associated domain LY388_RS09960 PF00155 Aminotransferase class I and II LY388_RS09965 PF00425 chorismate binding enzyme LY388_RS09970 PF16582 Middle domain of thiamine pyrophosphate LY388_RS09970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LY388_RS09970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LY388_RS09975 PF12697 Alpha/beta hydrolase family LY388_RS09980 PF00378 Enoyl-CoA hydratase/isomerase LY388_RS09985 PF13378 Enolase C-terminal domain-like LY388_RS09990 PF00501 AMP-binding enzyme LY388_RS09990 PF13193 AMP-binding enzyme C-terminal domain LY388_RS09995 PF03594 Benzoate membrane transport protein LY388_RS10000 PF01381 Helix-turn-helix LY388_RS10000 PF07883 Cupin domain LY388_RS10005 PF12729 Four helix bundle sensory module for signal transduction LY388_RS10005 PF00672 HAMP domain LY388_RS10005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS10015 PF07690 Major Facilitator Superfamily LY388_RS10035 PF04170 NlpE N-terminal domain LY388_RS10040 PF03776 Septum formation topological specificity factor MinE LY388_RS10045 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LY388_RS10050 PF03775 Septum formation inhibitor MinC, C-terminal domain LY388_RS10050 PF05209 Septum formation inhibitor MinC, N-terminal domain LY388_RS10055 PF05166 YcgL domain LY388_RS10060 PF13406 Transglycosylase SLT domain LY388_RS10065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS10065 PF03466 LysR substrate binding domain LY388_RS10070 PF07662 Na+ dependent nucleoside transporter C-terminus LY388_RS10070 PF07670 Nucleoside recognition LY388_RS10070 PF01773 Na+ dependent nucleoside transporter N-terminus LY388_RS10075 PF06483 Chitinase C LY388_RS10075 PF00704 Glycosyl hydrolases family 18 LY388_RS10080 PF03264 NapC/NirT cytochrome c family, N-terminal region LY388_RS10085 PF18364 Molybdopterin oxidoreductase N-terminal domain LY388_RS10085 PF01568 Molydopterin dinucleotide binding domain LY388_RS10085 PF00384 Molybdopterin oxidoreductase LY388_RS10095 PF03466 LysR substrate binding domain LY388_RS10095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS10100 PF01494 FAD binding domain LY388_RS10105 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LY388_RS10110 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LY388_RS10110 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LY388_RS10155 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS10155 PF13188 PAS domain LY388_RS10155 PF00563 EAL domain LY388_RS10155 PF03707 Bacterial signalling protein N terminal repeat LY388_RS10165 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LY388_RS10170 PF03480 Bacterial extracellular solute-binding protein, family 7 LY388_RS10175 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LY388_RS10180 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LY388_RS10185 PF02954 Bacterial regulatory protein, Fis family LY388_RS10185 PF00158 Sigma-54 interaction domain LY388_RS10185 PF00072 Response regulator receiver domain LY388_RS10190 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS10190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS10200 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LY388_RS10200 PF05698 Bacterial trigger factor protein (TF) C-terminus LY388_RS10200 PF05697 Bacterial trigger factor protein (TF) LY388_RS10205 PF00574 Clp protease LY388_RS10210 PF06689 ClpX C4-type zinc finger LY388_RS10210 PF10431 C-terminal, D2-small domain, of ClpB protein LY388_RS10210 PF07724 AAA domain (Cdc48 subfamily) LY388_RS10215 PF02190 ATP-dependent protease La (LON) substrate-binding domain LY388_RS10215 PF05362 Lon protease (S16) C-terminal proteolytic domain LY388_RS10215 PF00004 ATPase family associated with various cellular activities (AAA) LY388_RS10220 PF00216 Bacterial DNA-binding protein LY388_RS10225 PF13145 PPIC-type PPIASE domain LY388_RS10235 PF02224 Cytidylate kinase LY388_RS10240 PF00575 S1 RNA binding domain LY388_RS10245 PF00216 Bacterial DNA-binding protein LY388_RS10250 PF06305 Lipopolysaccharide assembly protein A domain LY388_RS10255 PF18073 Rubredoxin metal binding domain LY388_RS10260 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LY388_RS10265 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS10270 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS10270 PF12911 N-terminal TM domain of oligopeptide transport permease C LY388_RS10275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LY388_RS10280 PF00005 ABC transporter LY388_RS10280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LY388_RS10285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LY388_RS10285 PF00005 ABC transporter LY388_RS10300 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LY388_RS10310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS10310 PF03466 LysR substrate binding domain LY388_RS10320 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LY388_RS10320 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LY388_RS10325 PF01037 Lrp/AsnC ligand binding domain LY388_RS10330 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LY388_RS10330 PF17854 FtsK alpha domain LY388_RS10330 PF09397 Ftsk gamma domain LY388_RS10330 PF01580 FtsK/SpoIIIE family LY388_RS10335 PF02600 Disulfide bond formation protein DsbB LY388_RS10340 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LY388_RS10345 PF07840 FadR C-terminal domain LY388_RS10345 PF00392 Bacterial regulatory proteins, gntR family LY388_RS10355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS10355 PF00672 HAMP domain LY388_RS10360 PF01230 HIT domain LY388_RS10375 PF13036 Peptidoglycan-synthase activator LpoB LY388_RS10375 PF08139 Prokaryotic membrane lipoprotein lipid attachment site LY388_RS10385 PF05728 Uncharacterised protein family (UPF0227) LY388_RS10390 PF07992 Pyridine nucleotide-disulphide oxidoreductase LY388_RS10400 PF16458 Beta-prism lectin LY388_RS10400 PF12563 Hemolytic toxin N terminal LY388_RS10400 PF07968 Leukocidin/Hemolysin toxin family LY388_RS10410 PF03461 TRCF domain LY388_RS10410 PF00271 Helicase conserved C-terminal domain LY388_RS10410 PF00270 DEAD/DEAH box helicase LY388_RS10410 PF02559 CarD-like/TRCF domain LY388_RS10410 PF17757 UvrB interaction domain LY388_RS10420 PF02687 FtsX-like permease family LY388_RS10420 PF12704 MacB-like periplasmic core domain LY388_RS10425 PF00005 ABC transporter LY388_RS10430 PF12704 MacB-like periplasmic core domain LY388_RS10430 PF02687 FtsX-like permease family LY388_RS10440 PF00753 Metallo-beta-lactamase superfamily LY388_RS10440 PF13567 Domain of unknown function (DUF4131) LY388_RS10440 PF03772 Competence protein LY388_RS10445 PF00005 ABC transporter LY388_RS10445 PF00664 ABC transporter transmembrane region LY388_RS10450 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LY388_RS10455 PF03966 Trm112p-like protein LY388_RS10460 PF02348 Cytidylyltransferase LY388_RS10465 PF04293 SpoVR like protein LY388_RS10470 PF04285 Protein of unknown function (DUF444) LY388_RS10475 PF08298 PrkA AAA domain LY388_RS10475 PF06798 PrkA serine protein kinase C-terminal domain LY388_RS10480 PF03887 YfbU domain LY388_RS10490 PF04055 Radical SAM superfamily LY388_RS10495 PF12729 Four helix bundle sensory module for signal transduction LY388_RS10495 PF00672 HAMP domain LY388_RS10495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS10505 PF01228 Glycine radical LY388_RS10505 PF02901 Pyruvate formate lyase-like LY388_RS10515 PF00005 ABC transporter LY388_RS10520 PF00497 Bacterial extracellular solute-binding proteins, family 3 LY388_RS10525 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS10530 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS10535 PF03372 Endonuclease/Exonuclease/phosphatase family LY388_RS10540 PF00672 HAMP domain LY388_RS10540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS10545 PF10689 Protein of unknown function (DUF2496) LY388_RS10550 PF07445 Primosomal replication protein priC LY388_RS10555 PF01925 Sulfite exporter TauE/SafE LY388_RS10560 PF06733 DEAD_2 LY388_RS10560 PF13307 Helicase C-terminal domain LY388_RS10570 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LY388_RS10575 PF02810 SEC-C motif LY388_RS10580 PF00563 EAL domain LY388_RS10580 PF08668 HDOD domain LY388_RS10585 PF00149 Calcineurin-like phosphoesterase LY388_RS10590 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LY388_RS10595 PF09190 DALR domain LY388_RS10595 PF01406 tRNA synthetases class I (C) catalytic domain LY388_RS10600 PF02075 Crossover junction endodeoxyribonuclease RuvC LY388_RS10605 PF07499 RuvA, C-terminal domain LY388_RS10605 PF01330 RuvA N terminal domain LY388_RS10610 PF05496 Holliday junction DNA helicase RuvB P-loop domain LY388_RS10610 PF05491 RuvB C-terminal winged helix domain LY388_RS10610 PF17864 RuvB AAA lid domain LY388_RS10615 PF01654 Cytochrome bd terminal oxidase subunit I LY388_RS10620 PF02322 Cytochrome bd terminal oxidase subunit II LY388_RS10625 PF08173 Membrane bound YbgT-like protein LY388_RS10630 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LY388_RS10635 PF03061 Thioesterase superfamily LY388_RS10640 PF01618 MotA/TolQ/ExbB proton channel family LY388_RS10645 PF02472 Biopolymer transport protein ExbD/TolR LY388_RS10655 PF07676 WD40-like Beta Propeller Repeat LY388_RS10655 PF04052 TolB amino-terminal domain LY388_RS10660 PF00691 OmpA family LY388_RS10670 PF02445 Quinolinate synthetase A protein LY388_RS10680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS10680 PF09308 LuxQ, periplasmic LY388_RS10680 PF00072 Response regulator receiver domain LY388_RS10680 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS10685 PF06610 L-alanine exporter LY388_RS10690 PF01238 Phosphomannose isomerase type I LY388_RS10695 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LY388_RS10695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LY388_RS10695 PF02378 Phosphotransferase system, EIIC LY388_RS10700 PF12833 Helix-turn-helix domain LY388_RS10710 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LY388_RS10730 PF00171 Aldehyde dehydrogenase family LY388_RS10735 PF01590 GAF domain LY388_RS10735 PF02954 Bacterial regulatory protein, Fis family LY388_RS10735 PF00158 Sigma-54 interaction domain LY388_RS10740 PF09905 DNA-binding protein VF530 LY388_RS10750 PF00875 DNA photolyase LY388_RS10750 PF03441 FAD binding domain of DNA photolyase LY388_RS10800 PF04002 RadC-like JAB domain LY388_RS10835 PF00717 Peptidase S24-like LY388_RS10840 PF00817 impB/mucB/samB family LY388_RS10840 PF11799 impB/mucB/samB family C-terminal domain LY388_RS10840 PF11798 IMS family HHH motif LY388_RS10840 PF13438 Domain of unknown function (DUF4113) LY388_RS10860 PF00271 Helicase conserved C-terminal domain LY388_RS10860 PF00176 SNF2 family N-terminal domain LY388_RS10870 PF00270 DEAD/DEAH box helicase LY388_RS10870 PF09369 Domain of unknown function (DUF1998) LY388_RS10870 PF00271 Helicase conserved C-terminal domain LY388_RS10875 PF00580 UvrD/REP helicase N-terminal domain LY388_RS10875 PF13361 UvrD-like helicase C-terminal domain LY388_RS10905 PF00589 Phage integrase family LY388_RS10905 PF13356 Arm DNA-binding domain LY388_RS10915 PF00873 AcrB/AcrD/AcrF family LY388_RS10920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LY388_RS10930 PF02470 MlaD protein LY388_RS10935 PF04403 Paraquat-inducible protein A LY388_RS10940 PF08362 YcdC-like protein, C-terminal region LY388_RS10940 PF00440 Bacterial regulatory proteins, tetR family LY388_RS10945 PF00171 Aldehyde dehydrogenase family LY388_RS10950 PF07383 Protein of unknown function (DUF1496) LY388_RS10960 PF16295 Tetracyclin repressor-like, C-terminal domain LY388_RS10960 PF00440 Bacterial regulatory proteins, tetR family LY388_RS10965 PF09317 Domain of unknown function (DUF1974) LY388_RS10965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LY388_RS10965 PF02770 Acyl-CoA dehydrogenase, middle domain LY388_RS10965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LY388_RS10970 PF07055 Enoyl reductase FAD binding domain LY388_RS10970 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LY388_RS10970 PF12241 Trans-2-enoyl-CoA reductase catalytic region LY388_RS10975 PF01176 Translation initiation factor 1A / IF-1 LY388_RS10980 PF04377 Arginine-tRNA-protein transferase, C terminus LY388_RS10980 PF04376 Arginine-tRNA-protein transferase, N terminus LY388_RS10985 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LY388_RS10990 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LY388_RS10995 PF10692 Protein of unknown function (DUF2498) LY388_RS11000 PF01396 Topoisomerase DNA binding C4 zinc finger LY388_RS11000 PF01131 DNA topoisomerase LY388_RS11000 PF08272 Topoisomerase I zinc-ribbon-like LY388_RS11000 PF01751 Toprim domain LY388_RS11005 PF00483 Nucleotidyl transferase LY388_RS11010 PF00534 Glycosyl transferases group 1 LY388_RS11010 PF08323 Starch synthase catalytic domain LY388_RS11030 PF04994 TfoX C-terminal domain LY388_RS11030 PF04993 TfoX N-terminal domain LY388_RS11035 PF00356 Bacterial regulatory proteins, lacI family LY388_RS11040 PF02613 Nitrate reductase delta subunit LY388_RS11045 PF00072 Response regulator receiver domain LY388_RS11045 PF00486 Transcriptional regulatory protein, C terminal LY388_RS11050 PF02698 DUF218 domain LY388_RS11055 PF13847 Methyltransferase domain LY388_RS11060 PF17193 MukF C-terminal domain LY388_RS11060 PF03882 MukF winged-helix domain LY388_RS11060 PF17192 MukF middle domain LY388_RS11065 PF04288 MukE-like family LY388_RS11070 PF16330 MukB hinge domain LY388_RS11070 PF04310 MukB N-terminal LY388_RS11075 PF00465 Iron-containing alcohol dehydrogenase LY388_RS11080 PF06719 AraC-type transcriptional regulator N-terminus LY388_RS11080 PF12833 Helix-turn-helix domain LY388_RS11090 PF01037 Lrp/AsnC ligand binding domain LY388_RS11095 PF01810 LysE type translocator LY388_RS11100 PF11842 Domain of unknown function (DUF3362) LY388_RS11100 PF04055 Radical SAM superfamily LY388_RS11100 PF08497 Radical SAM N-terminal LY388_RS11105 PF08448 PAS fold LY388_RS11105 PF08447 PAS fold LY388_RS11105 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS11105 PF00563 EAL domain LY388_RS11110 PF00675 Insulinase (Peptidase family M16) LY388_RS11110 PF05193 Peptidase M16 inactive domain LY388_RS11125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS11125 PF03466 LysR substrate binding domain LY388_RS11130 PF08267 Cobalamin-independent synthase, N-terminal domain LY388_RS11130 PF01717 Cobalamin-independent synthase, Catalytic domain LY388_RS11140 PF03795 YCII-related domain LY388_RS11145 PF03061 Thioesterase superfamily LY388_RS11150 PF04279 Intracellular septation protein A LY388_RS11160 PF02698 DUF218 domain LY388_RS11165 PF01370 NAD dependent epimerase/dehydratase family LY388_RS11175 PF01226 Formate/nitrite transporter LY388_RS11180 PF06796 Periplasmic nitrate reductase protein NapE LY388_RS11185 PF03264 NapC/NirT cytochrome c family, N-terminal region LY388_RS11190 PF00384 Molybdopterin oxidoreductase LY388_RS11190 PF18364 Molybdopterin oxidoreductase N-terminal domain LY388_RS11190 PF01568 Molydopterin dinucleotide binding domain LY388_RS11210 PF01368 DHH family LY388_RS11210 PF02833 DHHA2 domain LY388_RS11225 PF00005 ABC transporter LY388_RS11230 PF00005 ABC transporter LY388_RS11230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LY388_RS11235 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS11235 PF12911 N-terminal TM domain of oligopeptide transport permease C LY388_RS11240 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS11245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LY388_RS11250 PF00158 Sigma-54 interaction domain LY388_RS11250 PF02954 Bacterial regulatory protein, Fis family LY388_RS11255 PF04012 PspA/IM30 family LY388_RS11270 PF00529 HlyD membrane-fusion protein of T1SS LY388_RS11270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LY388_RS11275 PF13533 Biotin-lipoyl like LY388_RS11280 PF00873 AcrB/AcrD/AcrF family LY388_RS11285 PF03352 Methyladenine glycosylase LY388_RS11290 PF01053 Cys/Met metabolism PLP-dependent enzyme LY388_RS11295 PF13396 Phospholipase_D-nuclease N-terminal LY388_RS11295 PF13091 PLD-like domain LY388_RS11300 PF00209 Sodium:neurotransmitter symporter family LY388_RS11305 PF00849 RNA pseudouridylate synthase LY388_RS11310 PF01066 CDP-alcohol phosphatidyltransferase LY388_RS11315 PF00005 ABC transporter LY388_RS11320 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS11325 PF13416 Bacterial extracellular solute-binding protein LY388_RS11335 PF06945 Protein of unknown function (DUF1289) LY388_RS11350 PF00005 ABC transporter LY388_RS11355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LY388_RS11360 PF03222 Tryptophan/tyrosine permease family LY388_RS11370 PF00571 CBS domain LY388_RS11370 PF03448 MgtE intracellular N domain LY388_RS11370 PF01769 Divalent cation transporter LY388_RS11375 PF00072 Response regulator receiver domain LY388_RS11375 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS11375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS11375 PF09308 LuxQ, periplasmic LY388_RS11380 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS11380 PF03707 Bacterial signalling protein N terminal repeat LY388_RS11380 PF00563 EAL domain LY388_RS11390 PF01752 Collagenase LY388_RS11390 PF08453 Peptidase family M9 N-terminal LY388_RS11390 PF04151 Bacterial pre-peptidase C-terminal domain LY388_RS11400 PF12793 Sugar transport-related sRNA regulator N-term LY388_RS11400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LY388_RS11415 PF09009 Exotoxin A catalytic LY388_RS11415 PF09102 Exotoxin A, targeting LY388_RS11415 PF09101 Exotoxin A binding LY388_RS11425 PF00672 HAMP domain LY388_RS11425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS11425 PF12729 Four helix bundle sensory module for signal transduction LY388_RS11435 PF00563 EAL domain LY388_RS11435 PF00360 Phytochrome region LY388_RS11435 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS11435 PF01590 GAF domain LY388_RS11440 PF01386 Ribosomal L25p family LY388_RS11445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS11450 PF00486 Transcriptional regulatory protein, C terminal LY388_RS11450 PF00072 Response regulator receiver domain LY388_RS11460 PF04851 Type III restriction enzyme, res subunit LY388_RS11460 PF00271 Helicase conserved C-terminal domain LY388_RS11465 PF00849 RNA pseudouridylate synthase LY388_RS11465 PF01479 S4 domain LY388_RS11470 PF07690 Major Facilitator Superfamily LY388_RS11480 PF11066 Protein of unknown function (DUF2867) LY388_RS11480 PF13460 NAD(P)H-binding LY388_RS11485 PF01554 MatE LY388_RS11490 PF00005 ABC transporter LY388_RS11495 PF12704 MacB-like periplasmic core domain LY388_RS11495 PF02687 FtsX-like permease family LY388_RS11505 PF06965 Na+/H+ antiporter 1 LY388_RS11510 PF00202 Aminotransferase class-III LY388_RS11515 PF03435 Saccharopine dehydrogenase NADP binding domain LY388_RS11515 PF16653 Saccharopine dehydrogenase C-terminal domain LY388_RS11525 PF00691 OmpA family LY388_RS11525 PF05736 OprF membrane domain LY388_RS11530 PF02321 Outer membrane efflux protein LY388_RS11550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS11550 PF03466 LysR substrate binding domain LY388_RS11560 PF01863 Protein of unknown function DUF45 LY388_RS11565 PF05971 RNA methyltransferase LY388_RS11580 PF04204 Homoserine O-succinyltransferase LY388_RS11600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LY388_RS11615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS11615 PF00989 PAS fold LY388_RS11615 PF17203 Single cache domain 3 LY388_RS11615 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LY388_RS11620 PF00072 Response regulator receiver domain LY388_RS11620 PF12431 Transcriptional regulator LY388_RS11630 PF01584 CheW-like domain LY388_RS11630 PF00072 Response regulator receiver domain LY388_RS11650 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS11650 PF00072 Response regulator receiver domain LY388_RS11670 PF07690 Major Facilitator Superfamily LY388_RS11675 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LY388_RS11675 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LY388_RS11680 PF10509 Galactokinase galactose-binding signature LY388_RS11680 PF08544 GHMP kinases C terminal LY388_RS11680 PF00288 GHMP kinases N terminal domain LY388_RS11685 PF01263 Aldose 1-epimerase LY388_RS11690 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS11695 PF00563 EAL domain LY388_RS11695 PF17154 Gammaproteobacterial periplasmic sensor domain LY388_RS11695 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS11695 PF00672 HAMP domain LY388_RS11705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LY388_RS11705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LY388_RS11705 PF00205 Thiamine pyrophosphate enzyme, central domain LY388_RS11710 PF03306 Alpha-acetolactate decarboxylase LY388_RS11715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS11715 PF03466 LysR substrate binding domain LY388_RS11720 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) LY388_RS11725 PF00361 Proton-conducting membrane transporter LY388_RS11725 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LY388_RS11730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS11730 PF03466 LysR substrate binding domain LY388_RS11735 PF13193 AMP-binding enzyme C-terminal domain LY388_RS11735 PF00501 AMP-binding enzyme LY388_RS11750 PF04266 ASCH domain LY388_RS11765 PF10415 Fumarase C C-terminus LY388_RS11765 PF00206 Lyase LY388_RS11775 PF01654 Cytochrome bd terminal oxidase subunit I LY388_RS11780 PF02322 Cytochrome bd terminal oxidase subunit II LY388_RS11785 PF02687 FtsX-like permease family LY388_RS11785 PF12704 MacB-like periplasmic core domain LY388_RS11785 PF00005 ABC transporter LY388_RS11790 PF00005 ABC transporter LY388_RS11790 PF02687 FtsX-like permease family LY388_RS11790 PF12704 MacB-like periplasmic core domain LY388_RS11795 PF00005 ABC transporter LY388_RS11795 PF02687 FtsX-like permease family LY388_RS11795 PF12704 MacB-like periplasmic core domain LY388_RS11805 PF00529 HlyD membrane-fusion protein of T1SS LY388_RS11815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS11815 PF03466 LysR substrate binding domain LY388_RS11820 PF00141 Peroxidase LY388_RS11825 PF00232 Glycosyl hydrolase family 1 LY388_RS11830 PF00356 Bacterial regulatory proteins, lacI family LY388_RS11835 PF01042 Endoribonuclease L-PSP LY388_RS11840 PF04074 YhcH/YjgK/YiaL LY388_RS11845 PF03009 Glycerophosphoryl diester phosphodiesterase family LY388_RS11850 PF00455 DeoR C terminal sensor domain LY388_RS11850 PF08220 DeoR-like helix-turn-helix domain LY388_RS11855 PF00005 ABC transporter LY388_RS11855 PF17912 MalK OB fold domain LY388_RS11860 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS11865 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS11870 PF13416 Bacterial extracellular solute-binding protein LY388_RS11880 PF01618 MotA/TolQ/ExbB proton channel family LY388_RS11885 PF01618 MotA/TolQ/ExbB proton channel family LY388_RS11890 PF02472 Biopolymer transport protein ExbD/TolR LY388_RS11895 PF03544 Gram-negative bacterial TonB protein C-terminal LY388_RS11905 PF01068 ATP dependent DNA ligase domain LY388_RS11905 PF14743 DNA ligase OB-like domain LY388_RS11915 PF01554 MatE LY388_RS11925 PF03881 Fructosamine kinase LY388_RS11935 PF00877 NlpC/P60 family LY388_RS11940 PF02743 Cache domain LY388_RS11940 PF00672 HAMP domain LY388_RS11940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS11950 PF03942 DTW domain LY388_RS11955 PF00480 ROK family LY388_RS11965 PF03453 MoeA N-terminal region (domain I and II) LY388_RS11965 PF03454 MoeA C-terminal region (domain IV) LY388_RS11965 PF00994 Probable molybdopterin binding domain LY388_RS11970 PF12804 MobA-like NTP transferase domain LY388_RS11975 PF00005 ABC transporter LY388_RS11975 PF08402 TOBE domain LY388_RS11980 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS11985 PF12849 PBP superfamily domain LY388_RS11990 PF00072 Response regulator receiver domain LY388_RS11990 PF02954 Bacterial regulatory protein, Fis family LY388_RS11990 PF00158 Sigma-54 interaction domain LY388_RS11995 PF00989 PAS fold LY388_RS11995 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS11995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS12000 PF00005 ABC transporter LY388_RS12000 PF12848 ABC transporter LY388_RS12005 PF02634 FdhD/NarQ family LY388_RS12025 PF02613 Nitrate reductase delta subunit LY388_RS12035 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LY388_RS12035 PF00384 Molybdopterin oxidoreductase LY388_RS12035 PF01568 Molydopterin dinucleotide binding domain LY388_RS12040 PF13247 4Fe-4S dicluster domain LY388_RS12055 PF02146 Sir2 family LY388_RS12060 PF04461 Protein of unknown function (DUF520) LY388_RS12065 PF00793 DAHP synthetase I family LY388_RS12080 PF13509 S1 domain LY388_RS12080 PF17783 CvfB-like winged helix domain LY388_RS12085 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LY388_RS12085 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LY388_RS12085 PF01189 16S rRNA methyltransferase RsmB/F LY388_RS12090 PF02470 MlaD protein LY388_RS12095 PF04403 Paraquat-inducible protein A LY388_RS12100 PF00664 ABC transporter transmembrane region LY388_RS12100 PF00005 ABC transporter LY388_RS12105 PF13185 GAF domain LY388_RS12110 PF04352 ProQ/FINO family LY388_RS12110 PF17516 ProQ C-terminal domain LY388_RS12115 PF11818 C-terminal domain of tail specific protease (DUF3340) LY388_RS12115 PF03572 Peptidase family S41 LY388_RS12115 PF00595 PDZ domain LY388_RS12115 PF17804 Tail specific protease N-terminal domain LY388_RS12125 PF01433 Peptidase family M1 domain LY388_RS12125 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LY388_RS12125 PF11940 Domain of unknown function (DUF3458) Ig-like fold LY388_RS12135 PF05088 Bacterial NAD-glutamate dehydrogenase LY388_RS12140 PF01180 Dihydroorotate dehydrogenase LY388_RS12145 PF07126 Cell-division protein ZapC LY388_RS12150 PF10672 S-adenosylmethionine-dependent methyltransferase LY388_RS12150 PF02926 THUMP domain LY388_RS12150 PF01170 Putative RNA methylase family UPF0020 LY388_RS12160 PF00005 ABC transporter LY388_RS12160 PF16326 ABC transporter C-terminal domain LY388_RS12160 PF12848 ABC transporter LY388_RS12170 PF04957 Ribosome modulation factor LY388_RS12175 PF07977 FabA-like domain LY388_RS12180 PF13654 AAA domain LY388_RS12180 PF05362 Lon protease (S16) C-terminal proteolytic domain LY388_RS12185 PF06303 MatP N-terminal domain LY388_RS12185 PF17414 MatP C-terminal ribbon-helix-helix domain LY388_RS12200 PF07634 RtxA repeat LY388_RS12200 PF11713 Peptidase C80 family LY388_RS12200 PF11647 Membrane Localization Domain LY388_RS12200 PF12146 Serine aminopeptidase, S33 LY388_RS12200 PF16671 Actin cross-linking domain LY388_RS12205 PF02794 RTX toxin acyltransferase family LY388_RS12215 PF03412 Peptidase C39 family LY388_RS12215 PF00005 ABC transporter LY388_RS12215 PF00664 ABC transporter transmembrane region LY388_RS12225 PF00664 ABC transporter transmembrane region LY388_RS12225 PF00005 ABC transporter LY388_RS12225 PF03412 Peptidase C39 family LY388_RS12230 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS12230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS12230 PF09308 LuxQ, periplasmic LY388_RS12230 PF00072 Response regulator receiver domain LY388_RS12245 PF00115 Cytochrome C and Quinol oxidase polypeptide I LY388_RS12260 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LY388_RS12260 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LY388_RS12270 PF00403 Heavy-metal-associated domain LY388_RS12285 PF13545 Crp-like helix-turn-helix domain LY388_RS12285 PF00027 Cyclic nucleotide-binding domain LY388_RS12290 PF00582 Universal stress protein family LY388_RS12295 PF01171 PP-loop family LY388_RS12315 PF08402 TOBE domain LY388_RS12315 PF00005 ABC transporter LY388_RS12320 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS12325 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS12330 PF13416 Bacterial extracellular solute-binding protein LY388_RS12335 PF13416 Bacterial extracellular solute-binding protein LY388_RS12350 PF01235 Sodium:alanine symporter family LY388_RS12355 PF01810 LysE type translocator LY388_RS12370 PF01764 Lipase (class 3) LY388_RS12380 PF16671 Actin cross-linking domain LY388_RS12380 PF04717 Type VI secretion system, phage-baseplate injector LY388_RS12385 PF05638 Type VI secretion system effector, Hcp LY388_RS12390 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LY388_RS12395 PF02743 Cache domain LY388_RS12395 PF00672 HAMP domain LY388_RS12395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS12400 PF07690 Major Facilitator Superfamily LY388_RS12405 PF00529 HlyD membrane-fusion protein of T1SS LY388_RS12405 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LY388_RS12410 PF02321 Outer membrane efflux protein LY388_RS12420 PF00270 DEAD/DEAH box helicase LY388_RS12420 PF00271 Helicase conserved C-terminal domain LY388_RS12425 PF13426 PAS domain LY388_RS12425 PF08447 PAS fold LY388_RS12425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS12430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS12430 PF00672 HAMP domain LY388_RS12430 PF12729 Four helix bundle sensory module for signal transduction LY388_RS12440 PF00893 Small Multidrug Resistance protein LY388_RS12445 PF00875 DNA photolyase LY388_RS12445 PF03441 FAD binding domain of DNA photolyase LY388_RS12450 PF07690 Major Facilitator Superfamily LY388_RS12455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS12455 PF03466 LysR substrate binding domain LY388_RS12465 PF03099 Biotin/lipoate A/B protein ligase family LY388_RS12465 PF10437 Bacterial lipoate protein ligase C-terminus LY388_RS12470 PF00012 Hsp70 protein LY388_RS12480 PF00270 DEAD/DEAH box helicase LY388_RS12480 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LY388_RS12480 PF11898 Domain of unknown function (DUF3418) LY388_RS12480 PF04408 Helicase associated domain (HA2) LY388_RS12480 PF00271 Helicase conserved C-terminal domain LY388_RS12500 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS12500 PF03707 Bacterial signalling protein N terminal repeat LY388_RS12500 PF00563 EAL domain LY388_RS12510 PF00012 Hsp70 protein LY388_RS12515 PF00012 Hsp70 protein LY388_RS12520 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS12530 PF00563 EAL domain LY388_RS12530 PF03707 Bacterial signalling protein N terminal repeat LY388_RS12530 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS12550 PF06508 Queuosine biosynthesis protein QueC LY388_RS12555 PF04055 Radical SAM superfamily LY388_RS12565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LY388_RS12565 PF14824 Sirohaem biosynthesis protein central LY388_RS12565 PF10414 Sirohaem synthase dimerisation region LY388_RS12570 PF00497 Bacterial extracellular solute-binding proteins, family 3 LY388_RS12575 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS12580 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS12585 PF00005 ABC transporter LY388_RS12590 PF01027 Inhibitor of apoptosis-promoting Bax1 LY388_RS12595 PF04358 DsrC like protein LY388_RS12600 PF00708 Acylphosphatase LY388_RS12605 PF10672 S-adenosylmethionine-dependent methyltransferase LY388_RS12605 PF17785 PUA-like domain LY388_RS12610 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS12615 PF00462 Glutaredoxin LY388_RS12615 PF08534 Redoxin LY388_RS12625 PF00072 Response regulator receiver domain LY388_RS12630 PF14497 Glutathione S-transferase, C-terminal domain LY388_RS12630 PF02798 Glutathione S-transferase, N-terminal domain LY388_RS12640 PF04209 homogentisate 1,2-dioxygenase LY388_RS12645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LY388_RS12650 PF01546 Peptidase family M20/M25/M40 LY388_RS12650 PF07687 Peptidase dimerisation domain LY388_RS12665 PF16177 Acetyl-coenzyme A synthetase N-terminus LY388_RS12665 PF00501 AMP-binding enzyme LY388_RS12665 PF13193 AMP-binding enzyme C-terminal domain LY388_RS12670 PF04303 PrpF protein LY388_RS12675 PF00330 Aconitase family (aconitate hydratase) LY388_RS12675 PF00694 Aconitase C-terminal domain LY388_RS12680 PF00285 Citrate synthase, C-terminal domain LY388_RS12690 PF00392 Bacterial regulatory proteins, gntR family LY388_RS12690 PF07729 FCD domain LY388_RS12705 PF01970 Tripartite tricarboxylate transporter TctA family LY388_RS12725 PF00529 HlyD membrane-fusion protein of T1SS LY388_RS12725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LY388_RS12740 PF02653 Branched-chain amino acid transport system / permease component LY388_RS12745 PF00005 ABC transporter LY388_RS12750 PF13407 Periplasmic binding protein domain LY388_RS12770 PF00486 Transcriptional regulatory protein, C terminal LY388_RS12770 PF00072 Response regulator receiver domain LY388_RS12775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS12775 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS12775 PF00672 HAMP domain LY388_RS12780 PF06629 MltA-interacting protein MipA LY388_RS12785 PF04393 Protein of unknown function (DUF535) LY388_RS12790 PF02954 Bacterial regulatory protein, Fis family LY388_RS12790 PF00072 Response regulator receiver domain LY388_RS12790 PF00158 Sigma-54 interaction domain LY388_RS12795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS12795 PF00497 Bacterial extracellular solute-binding proteins, family 3 LY388_RS12795 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS12800 PF00939 Sodium:sulfate symporter transmembrane region LY388_RS12805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS12805 PF00672 HAMP domain LY388_RS12810 PF00842 Alanine racemase, C-terminal domain LY388_RS12810 PF01168 Alanine racemase, N-terminal domain LY388_RS12815 PF00892 EamA-like transporter family LY388_RS12825 PF13302 Acetyltransferase (GNAT) domain LY388_RS12830 PF18024 Helix-turn-helix domain LY388_RS12830 PF00158 Sigma-54 interaction domain LY388_RS12835 PF05128 Domain of unknown function (DUF697) LY388_RS12840 PF04317 YcjX-like family, DUF463 LY388_RS12855 PF04715 Anthranilate synthase component I, N terminal region LY388_RS12855 PF00425 chorismate binding enzyme LY388_RS12860 PF00293 NUDIX domain LY388_RS12865 PF03222 Tryptophan/tyrosine permease family LY388_RS12870 PF03313 Serine dehydratase alpha chain LY388_RS12870 PF03315 Serine dehydratase beta chain LY388_RS12875 PF01242 6-pyruvoyl tetrahydropterin synthase LY388_RS12880 PF00672 HAMP domain LY388_RS12880 PF12729 Four helix bundle sensory module for signal transduction LY388_RS12880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS12885 PF00152 tRNA synthetases class II (D, K and N) LY388_RS12885 PF01336 OB-fold nucleic acid binding domain LY388_RS12890 PF02581 Thiamine monophosphate synthase LY388_RS12890 PF08543 Phosphomethylpyrimidine kinase LY388_RS12895 PF00672 HAMP domain LY388_RS12895 PF01966 HD domain LY388_RS12900 PF00155 Aminotransferase class I and II LY388_RS12915 PF00672 HAMP domain LY388_RS12915 PF17200 Single Cache domain 2 LY388_RS12915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS12920 PF04349 Periplasmic glucan biosynthesis protein, MdoG LY388_RS12925 PF13506 Glycosyl transferase family 21 LY388_RS12930 PF00356 Bacterial regulatory proteins, lacI family LY388_RS12935 PF04794 YdjC-like protein LY388_RS12940 PF02056 Family 4 glycosyl hydrolase LY388_RS12940 PF11975 Family 4 glycosyl hydrolase C-terminal domain LY388_RS12945 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LY388_RS12950 PF02378 Phosphotransferase system, EIIC LY388_RS12955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LY388_RS12960 PF01522 Polysaccharide deacetylase LY388_RS12965 PF02028 BCCT, betaine/carnitine/choline family transporter LY388_RS12970 PF01047 MarR family LY388_RS12975 PF00196 Bacterial regulatory proteins, luxR family LY388_RS12975 PF00072 Response regulator receiver domain LY388_RS12980 PF07730 Histidine kinase LY388_RS12980 PF17200 Single Cache domain 2 LY388_RS12985 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LY388_RS12995 PF03480 Bacterial extracellular solute-binding protein, family 7 LY388_RS13010 PF00753 Metallo-beta-lactamase superfamily LY388_RS13015 PF05951 Bacterial protein of unknown function (DUF882) LY388_RS13050 PF00925 GTP cyclohydrolase II LY388_RS13060 PF07690 Major Facilitator Superfamily LY388_RS13070 PF00581 Rhodanese-like domain LY388_RS13070 PF17773 UPF0176 acylphosphatase like domain LY388_RS13075 PF03989 DNA gyrase C-terminal domain, beta-propeller LY388_RS13075 PF00521 DNA gyrase/topoisomerase IV, subunit A LY388_RS13085 PF00317 Ribonucleotide reductase, all-alpha domain LY388_RS13085 PF03477 ATP cone domain LY388_RS13085 PF02867 Ribonucleotide reductase, barrel domain LY388_RS13090 PF00268 Ribonucleotide reductase, small chain LY388_RS13095 PF00970 Oxidoreductase FAD-binding domain LY388_RS13095 PF00111 2Fe-2S iron-sulfur cluster binding domain LY388_RS13095 PF00175 Oxidoreductase NAD-binding domain LY388_RS13105 PF00994 Probable molybdopterin binding domain LY388_RS13120 PF00672 HAMP domain LY388_RS13120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS13120 PF17200 Single Cache domain 2 LY388_RS13135 PF00005 ABC transporter LY388_RS13140 PF01032 FecCD transport family LY388_RS13145 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LY388_RS13155 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LY388_RS13160 PF02654 Cobalamin-5-phosphate synthase LY388_RS13165 PF02277 Phosphoribosyltransferase LY388_RS13170 PF01641 SelR domain LY388_RS13175 PF00375 Sodium:dicarboxylate symporter family LY388_RS13180 PF08411 Exonuclease C-terminal LY388_RS13180 PF00929 Exonuclease LY388_RS13185 PF03788 LrgA family LY388_RS13190 PF04172 LrgB-like family LY388_RS13195 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LY388_RS13195 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LY388_RS13205 PF02222 ATP-grasp domain LY388_RS13210 PF05724 Thiopurine S-methyltransferase (TPMT) LY388_RS13220 PF00216 Bacterial DNA-binding protein LY388_RS13225 PF03483 B3/4 domain LY388_RS13225 PF03484 tRNA synthetase B5 domain LY388_RS13225 PF03147 Ferredoxin-fold anticodon binding domain LY388_RS13225 PF01588 Putative tRNA binding domain LY388_RS13225 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LY388_RS13230 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LY388_RS13230 PF01409 tRNA synthetases class II core domain (F) LY388_RS13240 PF00072 Response regulator receiver domain LY388_RS13240 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS13265 PF01066 CDP-alcohol phosphatidyltransferase LY388_RS13270 PF01541 GIY-YIG catalytic domain LY388_RS13270 PF08459 UvrC Helix-hairpin-helix N-terminal LY388_RS13270 PF02151 UvrB/uvrC motif LY388_RS13275 PF00196 Bacterial regulatory proteins, luxR family LY388_RS13275 PF00072 Response regulator receiver domain LY388_RS13280 PF00136 DNA polymerase family B LY388_RS13280 PF03104 DNA polymerase family B, exonuclease domain LY388_RS13285 PF00563 EAL domain LY388_RS13285 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS13285 PF13426 PAS domain LY388_RS13295 PF01132 Elongation factor P (EF-P) OB domain LY388_RS13295 PF08207 Elongation factor P (EF-P) KOW-like domain LY388_RS13295 PF09285 Elongation factor P, C-terminal LY388_RS13300 PF04269 Protein of unknown function, DUF440 LY388_RS13310 PF00392 Bacterial regulatory proteins, gntR family LY388_RS13310 PF07702 UTRA domain LY388_RS13315 PF01979 Amidohydrolase family LY388_RS13320 PF00491 Arginase family LY388_RS13325 PF17392 Urocanase C-terminal domain LY388_RS13325 PF17391 Urocanase N-terminal domain LY388_RS13325 PF01175 Urocanase Rossmann-like domain LY388_RS13330 PF00221 Aromatic amino acid lyase LY388_RS13345 PF04191 Phospholipid methyltransferase LY388_RS13350 PF02913 FAD linked oxidases, C-terminal domain LY388_RS13350 PF01565 FAD binding domain LY388_RS13350 PF13183 4Fe-4S dicluster domain LY388_RS13365 PF00691 OmpA family LY388_RS13365 PF13488 Glycine zipper LY388_RS13385 PF01259 SAICAR synthetase LY388_RS13395 PF00390 Malic enzyme, N-terminal domain LY388_RS13395 PF03949 Malic enzyme, NAD binding domain LY388_RS13405 PF02698 DUF218 domain LY388_RS13410 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS13410 PF08448 PAS fold LY388_RS13415 PF00266 Aminotransferase class-V LY388_RS13425 PF07992 Pyridine nucleotide-disulphide oxidoreductase LY388_RS13430 PF00664 ABC transporter transmembrane region LY388_RS13430 PF00005 ABC transporter LY388_RS13435 PF00005 ABC transporter LY388_RS13435 PF00664 ABC transporter transmembrane region LY388_RS13440 PF01479 S4 domain LY388_RS13440 PF00849 RNA pseudouridylate synthase LY388_RS13445 PF01300 Telomere recombination LY388_RS13450 PF02811 PHP domain LY388_RS13455 PF08056 Tryptophan operon leader peptide LY388_RS13460 PF04715 Anthranilate synthase component I, N terminal region LY388_RS13460 PF00425 chorismate binding enzyme LY388_RS13465 PF00117 Glutamine amidotransferase class-I LY388_RS13470 PF02885 Glycosyl transferase family, helical bundle domain LY388_RS13470 PF00591 Glycosyl transferase family, a/b domain LY388_RS13475 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LY388_RS13475 PF00218 Indole-3-glycerol phosphate synthase LY388_RS13480 PF00291 Pyridoxal-phosphate dependent enzyme LY388_RS13485 PF00290 Tryptophan synthase alpha chain LY388_RS13490 PF00375 Sodium:dicarboxylate symporter family LY388_RS13495 PF00265 Thymidine kinase LY388_RS13500 PF01336 OB-fold nucleic acid binding domain LY388_RS13500 PF02938 GAD domain LY388_RS13500 PF00152 tRNA synthetases class II (D, K and N) LY388_RS13505 PF01904 Protein of unknown function DUF72 LY388_RS13510 PF13649 Methyltransferase domain LY388_RS13515 PF08003 Protein of unknown function (DUF1698) LY388_RS13520 PF08443 RimK-like ATP-grasp domain LY388_RS13520 PF18030 RimK PreATP-grasp domain LY388_RS13535 PF00266 Aminotransferase class-V LY388_RS13545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS13545 PF00989 PAS fold LY388_RS13545 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS13560 PF04993 TfoX N-terminal domain LY388_RS13560 PF04994 TfoX C-terminal domain LY388_RS13570 PF03956 Lysine exporter LysO LY388_RS13580 PF00282 Pyridoxal-dependent decarboxylase conserved domain LY388_RS13585 PF01418 Helix-turn-helix domain, rpiR family LY388_RS13585 PF01380 SIS domain LY388_RS13590 PF00465 Iron-containing alcohol dehydrogenase LY388_RS13590 PF00171 Aldehyde dehydrogenase family LY388_RS13595 PF00462 Glutaredoxin LY388_RS13600 PF06826 Predicted Permease Membrane Region LY388_RS13600 PF02080 TrkA-C domain LY388_RS13605 PF10431 C-terminal, D2-small domain, of ClpB protein LY388_RS13605 PF02861 Clp amino terminal domain, pathogenicity island component LY388_RS13605 PF07724 AAA domain (Cdc48 subfamily) LY388_RS13605 PF00004 ATPase family associated with various cellular activities (AAA) LY388_RS13605 PF17871 AAA lid domain LY388_RS13610 PF02617 ATP-dependent Clp protease adaptor protein ClpS LY388_RS13615 PF00313 'Cold-shock' DNA-binding domain LY388_RS13620 PF03971 Monomeric isocitrate dehydrogenase LY388_RS13625 PF00849 RNA pseudouridylate synthase LY388_RS13630 PF01502 Phosphoribosyl-AMP cyclohydrolase LY388_RS13630 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LY388_RS13635 PF00977 Histidine biosynthesis protein LY388_RS13640 PF00977 Histidine biosynthesis protein LY388_RS13645 PF00117 Glutamine amidotransferase class-I LY388_RS13650 PF08645 Polynucleotide kinase 3 phosphatase LY388_RS13650 PF00475 Imidazoleglycerol-phosphate dehydratase LY388_RS13655 PF00155 Aminotransferase class I and II LY388_RS13660 PF00815 Histidinol dehydrogenase LY388_RS13665 PF08029 HisG, C-terminal domain LY388_RS13665 PF01634 ATP phosphoribosyltransferase LY388_RS13670 PF03553 Na+/H+ antiporter family LY388_RS13675 PF00816 H-NS histone family LY388_RS13680 PF00294 pfkB family carbohydrate kinase LY388_RS13690 PF04356 Protein of unknown function (DUF489) LY388_RS13695 PF08328 Adenylosuccinate lyase C-terminal LY388_RS13695 PF00206 Lyase LY388_RS13705 PF16036 Chalcone isomerase-like LY388_RS13730 PF00106 short chain dehydrogenase LY388_RS13740 PF01435 Peptidase family M48 LY388_RS13750 PF01381 Helix-turn-helix LY388_RS13750 PF00717 Peptidase S24-like LY388_RS13755 PF13693 Winged helix-turn-helix DNA-binding LY388_RS13760 PF02914 Bacteriophage Mu transposase LY388_RS13760 PF02316 Mu DNA-binding domain LY388_RS13760 PF09039 Mu DNA binding, I gamma subdomain LY388_RS13760 PF09299 Mu transposase, C-terminal LY388_RS13765 PF09077 Mu B transposition protein, C terminal LY388_RS13765 PF13401 AAA domain LY388_RS13875 PF08461 Ribonuclease R winged-helix domain LY388_RS13880 PF11985 Protein of unknown function (DUF3486) LY388_RS13890 PF03237 Terminase-like family LY388_RS13895 PF06074 Protein of unknown function (DUF935) LY388_RS13930 PF10124 Mu-like prophage major head subunit gpT LY388_RS13940 PF07030 Protein of unknown function (DUF1320) LY388_RS13965 PF04984 Phage tail sheath protein subtilisin-like domain LY388_RS13965 PF17482 Phage tail sheath C-terminal domain LY388_RS13975 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 LY388_RS13995 PF06890 Bacteriophage Mu Gp45 protein LY388_RS14005 PF04865 Baseplate J-like protein LY388_RS14010 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) LY388_RS14030 PF08241 Methyltransferase domain LY388_RS14035 PF00155 Aminotransferase class I and II LY388_RS14040 PF06968 Biotin and Thiamin Synthesis associated domain LY388_RS14040 PF04055 Radical SAM superfamily LY388_RS14045 PF00202 Aminotransferase class-III LY388_RS14050 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LY388_RS14050 PF02403 Seryl-tRNA synthetase N-terminal domain LY388_RS14055 PF12002 MgsA AAA+ ATPase C terminal LY388_RS14055 PF16193 AAA C-terminal domain LY388_RS14055 PF00004 ATPase family associated with various cellular activities (AAA) LY388_RS14060 PF03548 Outer membrane lipoprotein carrier protein LolA LY388_RS14065 PF02810 SEC-C motif LY388_RS14065 PF07517 SecA DEAD-like domain LY388_RS14065 PF01043 SecA preprotein cross-linking domain LY388_RS14065 PF07516 SecA Wing and Scaffold domain LY388_RS14070 PF01207 Dihydrouridine synthase (Dus) LY388_RS14075 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS14080 PF00005 ABC transporter LY388_RS14085 PF02653 Branched-chain amino acid transport system / permease component LY388_RS14095 PF09905 DNA-binding protein VF530 LY388_RS14100 PF04217 Protein of unknown function, DUF412 LY388_RS14105 PF00871 Acetokinase family LY388_RS14110 PF01515 Phosphate acetyl/butaryl transferase LY388_RS14110 PF07085 DRTGG domain LY388_RS14115 PF13409 Glutathione S-transferase, N-terminal domain LY388_RS14120 PF00005 ABC transporter LY388_RS14120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LY388_RS14125 PF00005 ABC transporter LY388_RS14125 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LY388_RS14130 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS14130 PF12911 N-terminal TM domain of oligopeptide transport permease C LY388_RS14135 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS14140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LY388_RS14150 PF00072 Response regulator receiver domain LY388_RS14150 PF13188 PAS domain LY388_RS14150 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS14150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS14150 PF08448 PAS fold LY388_RS14155 PF00158 Sigma-54 interaction domain LY388_RS14155 PF02954 Bacterial regulatory protein, Fis family LY388_RS14155 PF00072 Response regulator receiver domain LY388_RS14160 PF13188 PAS domain LY388_RS14160 PF03707 Bacterial signalling protein N terminal repeat LY388_RS14160 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS14160 PF00563 EAL domain LY388_RS14165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS14165 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS14170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS14170 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS14170 PF13188 PAS domain LY388_RS14170 PF00989 PAS fold LY388_RS14170 PF13426 PAS domain LY388_RS14180 PF00072 Response regulator receiver domain LY388_RS14195 PF03481 Putative GTP-binding controlling metal-binding LY388_RS14195 PF01300 Telomere recombination LY388_RS14210 PF01161 Phosphatidylethanolamine-binding protein LY388_RS14220 PF06483 Chitinase C LY388_RS14220 PF00704 Glycosyl hydrolases family 18 LY388_RS14235 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LY388_RS14235 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LY388_RS14240 PF01022 Bacterial regulatory protein, arsR family LY388_RS14250 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS14250 PF08448 PAS fold LY388_RS14260 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LY388_RS14275 PF01037 Lrp/AsnC ligand binding domain LY388_RS14275 PF13404 AsnC-type helix-turn-helix domain LY388_RS14280 PF00291 Pyridoxal-phosphate dependent enzyme LY388_RS14285 PF08496 Peptidase family S49 N-terminal LY388_RS14285 PF01343 Peptidase family S49 LY388_RS14290 PF00106 short chain dehydrogenase LY388_RS14295 PF03692 Putative zinc- or iron-chelating domain LY388_RS14300 PF03692 Putative zinc- or iron-chelating domain LY388_RS14305 PF13662 Toprim domain LY388_RS14305 PF02132 RecR protein LY388_RS14310 PF02575 YbaB/EbfC DNA-binding family LY388_RS14315 PF12169 DNA polymerase III subunits gamma and tau domain III LY388_RS14315 PF12170 DNA polymerase III tau subunit V interacting with alpha LY388_RS14315 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LY388_RS14320 PF00156 Phosphoribosyl transferase domain LY388_RS14325 PF04304 Protein of unknown function (DUF454) LY388_RS14330 PF00072 Response regulator receiver domain LY388_RS14335 PF03466 LysR substrate binding domain LY388_RS14335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS14340 PF00881 Nitroreductase family LY388_RS14345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LY388_RS14345 PF00378 Enoyl-CoA hydratase/isomerase LY388_RS14345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LY388_RS14350 PF02803 Thiolase, C-terminal domain LY388_RS14350 PF00108 Thiolase, N-terminal domain LY388_RS14355 PF04542 Sigma-70 region 2 LY388_RS14355 PF08281 Sigma-70, region 4 LY388_RS14365 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LY388_RS14370 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LY388_RS14375 PF01451 Low molecular weight phosphotyrosine protein phosphatase LY388_RS14380 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LY388_RS14380 PF12557 Cob(I)alamin adenosyltransferase N terminal LY388_RS14385 PF05170 AsmA family LY388_RS14390 PF00485 Phosphoribulokinase / Uridine kinase family LY388_RS14395 PF10609 NUBPL iron-transfer P-loop NTPase LY388_RS14400 PF09334 tRNA synthetases class I (M) LY388_RS14400 PF01588 Putative tRNA binding domain LY388_RS14410 PF01048 Phosphorylase superfamily LY388_RS14415 PF00403 Heavy-metal-associated domain LY388_RS14420 PF01743 Poly A polymerase head domain LY388_RS14420 PF00571 CBS domain LY388_RS14425 PF07694 5TMR of 5TMR-LYT LY388_RS14425 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS14430 PF02391 MoaE protein LY388_RS14435 PF02597 ThiS family LY388_RS14440 PF01967 MoaC family LY388_RS14445 PF00994 Probable molybdopterin binding domain LY388_RS14450 PF04055 Radical SAM superfamily LY388_RS14450 PF06463 Molybdenum Cofactor Synthesis C LY388_RS14455 PF01933 Uncharacterised protein family UPF0052 LY388_RS14460 PF01627 Hpt domain LY388_RS14465 PF00158 Sigma-54 interaction domain LY388_RS14465 PF00072 Response regulator receiver domain LY388_RS14465 PF02954 Bacterial regulatory protein, Fis family LY388_RS14470 PF17757 UvrB interaction domain LY388_RS14470 PF00271 Helicase conserved C-terminal domain LY388_RS14470 PF04851 Type III restriction enzyme, res subunit LY388_RS14470 PF02151 UvrB/uvrC motif LY388_RS14470 PF12344 Ultra-violet resistance protein B LY388_RS14480 PF02508 Rnf-Nqr subunit, membrane protein LY388_RS14485 PF04060 Putative Fe-S cluster LY388_RS14490 PF12838 4Fe-4S dicluster domain LY388_RS14490 PF13375 RnfC Barrel sandwich hybrid domain LY388_RS14490 PF10531 SLBB domain LY388_RS14490 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LY388_RS14495 PF03116 NQR2, RnfD, RnfE family LY388_RS14500 PF04205 FMN-binding domain LY388_RS14505 PF02508 Rnf-Nqr subunit, membrane protein LY388_RS14510 PF00633 Helix-hairpin-helix motif LY388_RS14510 PF00730 HhH-GPD superfamily base excision DNA repair protein LY388_RS14510 PF10576 Iron-sulfur binding domain of endonuclease III LY388_RS14515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LY388_RS14520 PF10952 Protein of unknown function (DUF2753) LY388_RS14525 PF18393 MotY N-terminal domain LY388_RS14525 PF00691 OmpA family LY388_RS14530 PF00929 Exonuclease LY388_RS14535 PF03553 Na+/H+ antiporter family LY388_RS14535 PF13726 Na+-H+ antiporter family LY388_RS14540 PF00156 Phosphoribosyl transferase domain LY388_RS14545 PF02674 Colicin V production protein LY388_RS14550 PF05036 Sporulation related domain LY388_RS14555 PF02875 Mur ligase family, glutamate ligase domain LY388_RS14555 PF08245 Mur ligase middle domain LY388_RS14560 PF01039 Carboxyl transferase domain LY388_RS14560 PF17848 Acetyl-coA carboxylase zinc finger domain LY388_RS14565 PF01416 tRNA pseudouridine synthase LY388_RS14580 PF00749 tRNA synthetases class I (E and Q), catalytic domain LY388_RS14580 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LY388_RS14585 PF02378 Phosphotransferase system, EIIC LY388_RS14585 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LY388_RS14585 PF00367 phosphotransferase system, EIIB LY388_RS14590 PF01979 Amidohydrolase family LY388_RS14595 PF01047 MarR family LY388_RS14595 PF00480 ROK family LY388_RS14600 PF00999 Sodium/hydrogen exchanger family LY388_RS14600 PF02254 TrkA-N domain LY388_RS14605 PF00733 Asparagine synthase LY388_RS14605 PF13537 Glutamine amidotransferase domain LY388_RS14610 PF02357 Transcription termination factor nusG LY388_RS14615 PF00854 POT family LY388_RS14620 PF00762 Ferrochelatase LY388_RS14625 PF05191 Adenylate kinase, active site lid LY388_RS14630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS14630 PF00183 Hsp90 protein LY388_RS14635 PF00486 Transcriptional regulatory protein, C terminal LY388_RS14640 PF17323 Trans-membrane regulatory protein ToxS LY388_RS14650 PF12850 Calcineurin-like phosphoesterase superfamily domain LY388_RS14655 PF08338 Domain of unknown function (DUF1731) LY388_RS14655 PF01370 NAD dependent epimerase/dehydratase family LY388_RS14660 PF00106 short chain dehydrogenase LY388_RS14665 PF00085 Thioredoxin LY388_RS14670 PF01145 SPFH domain / Band 7 family LY388_RS14670 PF16200 C-terminal region of band_7 LY388_RS14675 PF01957 NfeD-like C-terminal, partner-binding LY388_RS14680 PF13411 MerR HTH family regulatory protein LY388_RS14690 PF13609 Gram-negative porin LY388_RS14695 PF12826 Helix-hairpin-helix motif LY388_RS14695 PF00533 BRCA1 C Terminus (BRCT) domain LY388_RS14695 PF03120 NAD-dependent DNA ligase OB-fold domain LY388_RS14695 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LY388_RS14695 PF01653 NAD-dependent DNA ligase adenylation domain LY388_RS14700 PF04354 ZipA, C-terminal FtsZ-binding domain LY388_RS14710 PF00291 Pyridoxal-phosphate dependent enzyme LY388_RS14715 PF00381 PTS HPr component phosphorylation site LY388_RS14720 PF05524 PEP-utilising enzyme, N-terminal LY388_RS14720 PF00391 PEP-utilising enzyme, mobile domain LY388_RS14720 PF02896 PEP-utilising enzyme, TIM barrel domain LY388_RS14725 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LY388_RS14730 PF01494 FAD binding domain LY388_RS14735 PF04055 Radical SAM superfamily LY388_RS14735 PF01938 TRAM domain LY388_RS14735 PF00919 Uncharacterized protein family UPF0004 LY388_RS14740 PF02562 PhoH-like protein LY388_RS14745 PF02130 Uncharacterized protein family UPF0054 LY388_RS14750 PF00571 CBS domain LY388_RS14750 PF03471 Transporter associated domain LY388_RS14755 PF00795 Carbon-nitrogen hydrolase LY388_RS14760 PF07295 Zinc-ribbon containing domain LY388_RS14765 PF00133 tRNA synthetases class I (I, L, M and V) LY388_RS14765 PF13603 Leucyl-tRNA synthetase, Domain 2 LY388_RS14765 PF08264 Anticodon-binding domain of tRNA LY388_RS14770 PF04390 Lipopolysaccharide-assembly LY388_RS14775 PF14840 Processivity clamp loader gamma complex DNA pol III C-term LY388_RS14775 PF06144 DNA polymerase III, delta subunit LY388_RS14785 PF02590 Predicted SPOUT methyltransferase LY388_RS14790 PF03717 Penicillin-binding Protein dimerisation domain LY388_RS14790 PF00905 Penicillin binding protein transpeptidase domain LY388_RS14795 PF01098 Cell cycle protein LY388_RS14800 PF03330 Lytic transglycolase LY388_RS14800 PF05036 Sporulation related domain LY388_RS14805 PF00768 D-alanyl-D-alanine carboxypeptidase LY388_RS14805 PF07943 Penicillin-binding protein 5, C-terminal domain LY388_RS14810 PF04359 Protein of unknown function (DUF493) LY388_RS14815 PF03099 Biotin/lipoate A/B protein ligase family LY388_RS14820 PF04055 Radical SAM superfamily LY388_RS14820 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LY388_RS14830 PF00464 Serine hydroxymethyltransferase LY388_RS14850 PF13614 AAA domain LY388_RS14850 PF13807 G-rich domain on putative tyrosine kinase LY388_RS14850 PF02706 Chain length determinant protein LY388_RS14855 PF02563 Polysaccharide biosynthesis/export protein LY388_RS14855 PF10531 SLBB domain LY388_RS14855 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LY388_RS14865 PF02397 Bacterial sugar transferase LY388_RS14880 PF17945 Beta/Gamma crystallin LY388_RS14880 PF12561 ToxR activated gene A lipoprotein domain LY388_RS14895 PF03808 Glycosyl transferase WecB/TagA/CpsF family LY388_RS14905 PF00862 Sucrose synthase LY388_RS14905 PF00534 Glycosyl transferases group 1 LY388_RS14915 PF00132 Bacterial transferase hexapeptide (six repeats) LY388_RS14935 PF14602 Hexapeptide repeat of succinyl-transferase LY388_RS14935 PF12464 Maltose acetyltransferase LY388_RS14940 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LY388_RS14940 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LY388_RS14940 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LY388_RS14945 PF02350 UDP-N-acetylglucosamine 2-epimerase LY388_RS14950 PF01451 Low molecular weight phosphotyrosine protein phosphatase LY388_RS14955 PF00873 AcrB/AcrD/AcrF family LY388_RS14960 PF13533 Biotin-lipoyl like LY388_RS14985 PF00128 Alpha amylase, catalytic domain LY388_RS14985 PF16657 Maltogenic Amylase, C-terminal domain LY388_RS14990 PF02378 Phosphotransferase system, EIIC LY388_RS14990 PF00367 phosphotransferase system, EIIB LY388_RS14995 PF00356 Bacterial regulatory proteins, lacI family LY388_RS15005 PF09383 NIL domain LY388_RS15005 PF00005 ABC transporter LY388_RS15010 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS15015 PF03180 NLPA lipoprotein LY388_RS15020 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) LY388_RS15025 PF07348 Syd protein (SUKH-2) LY388_RS15030 PF14489 QueF-like protein LY388_RS15030 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LY388_RS15040 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS15045 PF11892 Domain of unknown function (DUF3412) LY388_RS15045 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LY388_RS15045 PF03641 Possible lysine decarboxylase LY388_RS15050 PF01367 5'-3' exonuclease, C-terminal SAM fold LY388_RS15050 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LY388_RS15055 PF04241 Protein of unknown function (DUF423) LY388_RS15060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS15060 PF03466 LysR substrate binding domain LY388_RS15065 PF02568 Thiamine biosynthesis protein (ThiI) LY388_RS15065 PF02926 THUMP domain LY388_RS15070 PF00691 OmpA family LY388_RS15070 PF13677 Membrane MotB of proton-channel complex MotA/MotB LY388_RS15075 PF01618 MotA/TolQ/ExbB proton channel family LY388_RS15085 PF02609 Exonuclease VII small subunit LY388_RS15090 PF00348 Polyprenyl synthetase LY388_RS15095 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LY388_RS15095 PF02779 Transketolase, pyrimidine binding domain LY388_RS15095 PF02780 Transketolase, C-terminal domain LY388_RS15100 PF00849 RNA pseudouridylate synthase LY388_RS15105 PF04287 tRNA pseudouridine synthase C LY388_RS15120 PF13302 Acetyltransferase (GNAT) domain LY388_RS15130 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LY388_RS15135 PF03806 AbgT putative transporter family LY388_RS15140 PF00444 Ribosomal protein L36 LY388_RS15145 PF01197 Ribosomal protein L31 LY388_RS15150 PF01980 tRNA-methyltransferase O LY388_RS15150 PF18389 TrmO C-terminal domain LY388_RS15155 PF04073 Aminoacyl-tRNA editing domain LY388_RS15155 PF03129 Anticodon binding domain LY388_RS15155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LY388_RS15165 PF06786 Uncharacterised protein family (UPF0253) LY388_RS15175 PF02769 AIR synthase related protein, C-terminal domain LY388_RS15175 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LY388_RS15175 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LY388_RS15185 PF00497 Bacterial extracellular solute-binding proteins, family 3 LY388_RS15185 PF01464 Transglycosylase SLT domain LY388_RS15190 PF14437 MafB19-like deaminase LY388_RS15195 PF03806 AbgT putative transporter family LY388_RS15220 PF07963 Prokaryotic N-terminal methylation motif LY388_RS15220 PF00114 Pilin (bacterial filament) LY388_RS15225 PF00226 DnaJ domain LY388_RS15225 PF00684 DnaJ central domain LY388_RS15225 PF01556 DnaJ C terminal domain LY388_RS15230 PF00012 Hsp70 protein LY388_RS15240 PF01025 GrpE LY388_RS15245 PF01513 ATP-NAD kinase LY388_RS15250 PF02463 RecF/RecN/SMC N terminal domain LY388_RS15255 PF04355 SmpA / OmlA family LY388_RS15260 PF03658 RnfH family Ubiquitin LY388_RS15265 PF03364 Polyketide cyclase / dehydrase and lipid transport LY388_RS15270 PF01668 SmpB protein LY388_RS15325 PF11953 Domain of unknown function (DUF3470) LY388_RS15325 PF00037 4Fe-4S binding domain LY388_RS15330 PF00588 SpoU rRNA Methylase family LY388_RS15330 PF08032 RNA 2'-O ribose methyltransferase substrate binding LY388_RS15340 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LY388_RS15345 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase LY388_RS15350 PF04223 Citrate lyase, alpha subunit (CitF) LY388_RS15355 PF03328 HpcH/HpaI aldolase/citrate lyase family LY388_RS15360 PF06857 Malonate decarboxylase delta subunit (MdcD) LY388_RS15365 PF08218 Citrate lyase ligase C-terminal domain LY388_RS15370 PF03390 2-hydroxycarboxylate transporter family LY388_RS15380 PF00364 Biotin-requiring enzyme LY388_RS15380 PF00682 HMGL-like LY388_RS15380 PF02436 Conserved carboxylase domain LY388_RS15385 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit LY388_RS15390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS15390 PF17203 Single cache domain 3 LY388_RS15395 PF12431 Transcriptional regulator LY388_RS15395 PF00072 Response regulator receiver domain LY388_RS15410 PF03466 LysR substrate binding domain LY388_RS15410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS15415 PF01266 FAD dependent oxidoreductase LY388_RS15420 PF01235 Sodium:alanine symporter family LY388_RS15425 PF00753 Metallo-beta-lactamase superfamily LY388_RS15425 PF14863 Alkyl sulfatase dimerisation LY388_RS15425 PF14864 Alkyl sulfatase C-terminal LY388_RS15430 PF03466 LysR substrate binding domain LY388_RS15430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS15435 PF01648 4'-phosphopantetheinyl transferase superfamily LY388_RS15435 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LY388_RS15440 PF00005 ABC transporter LY388_RS15445 PF01032 FecCD transport family LY388_RS15450 PF01032 FecCD transport family LY388_RS15455 PF01497 Periplasmic binding protein LY388_RS15470 PF00425 chorismate binding enzyme LY388_RS15475 PF00501 AMP-binding enzyme LY388_RS15475 PF13193 AMP-binding enzyme C-terminal domain LY388_RS15480 PF00550 Phosphopantetheine attachment site LY388_RS15480 PF00857 Isochorismatase family LY388_RS15485 PF01184 GPR1/FUN34/yaaH family LY388_RS15490 PF06483 Chitinase C LY388_RS15490 PF00704 Glycosyl hydrolases family 18 LY388_RS15495 PF00117 Glutamine amidotransferase class-I LY388_RS15495 PF00958 GMP synthase C terminal domain LY388_RS15495 PF02540 NAD synthase LY388_RS15500 PF00571 CBS domain LY388_RS15500 PF00478 IMP dehydrogenase / GMP reductase domain LY388_RS15505 PF02601 Exonuclease VII, large subunit LY388_RS15505 PF13742 OB-fold nucleic acid binding domain LY388_RS15520 PF01926 50S ribosome-binding GTPase LY388_RS15520 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LY388_RS15525 PF13360 PQQ-like domain LY388_RS15530 PF09976 Tetratricopeptide repeat-like domain LY388_RS15535 PF03129 Anticodon binding domain LY388_RS15535 PF13393 Histidyl-tRNA synthetase LY388_RS15540 PF04551 GcpE protein LY388_RS15545 PF13464 Domain of unknown function (DUF4115) LY388_RS15550 PF04055 Radical SAM superfamily LY388_RS15555 PF00334 Nucleoside diphosphate kinase LY388_RS15560 PF12404 Peptidase LY388_RS15560 PF00883 Cytosol aminopeptidase family, catalytic domain LY388_RS15565 PF04384 Iron-sulphur cluster assembly LY388_RS15570 PF00111 2Fe-2S iron-sulfur cluster binding domain LY388_RS15575 PF00012 Hsp70 protein LY388_RS15580 PF07743 HSCB C-terminal oligomerisation domain LY388_RS15580 PF00226 DnaJ domain LY388_RS15585 PF01521 Iron-sulphur cluster biosynthesis LY388_RS15590 PF01592 NifU-like N terminal domain LY388_RS15595 PF00266 Aminotransferase class-V LY388_RS15600 PF02082 Transcriptional regulator LY388_RS15605 PF00588 SpoU rRNA Methylase family LY388_RS15610 PF00459 Inositol monophosphatase family LY388_RS15615 PF07549 SecD/SecF GG Motif LY388_RS15615 PF02355 Protein export membrane protein LY388_RS15620 PF02355 Protein export membrane protein LY388_RS15620 PF13721 SecD export protein N-terminal TM region LY388_RS15620 PF07549 SecD/SecF GG Motif LY388_RS15625 PF02699 Preprotein translocase subunit LY388_RS15630 PF01702 Queuine tRNA-ribosyltransferase LY388_RS15635 PF02547 Queuosine biosynthesis protein LY388_RS15640 PF00571 CBS domain LY388_RS15645 PF00463 Isocitrate lyase family LY388_RS15650 PF01274 Malate synthase LY388_RS15655 PF03466 LysR substrate binding domain LY388_RS15655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS15660 PF10417 C-terminal domain of 1-Cys peroxiredoxin LY388_RS15660 PF00578 AhpC/TSA family LY388_RS15665 PF03932 CutC family LY388_RS15670 PF03976 Polyphosphate kinase 2 (PPK2) LY388_RS15675 PF01895 PhoU domain LY388_RS15680 PF00005 ABC transporter LY388_RS15685 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS15690 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS15695 PF13090 Polyphosphate kinase C-terminal domain 2 LY388_RS15695 PF13089 Polyphosphate kinase N-terminal domain LY388_RS15695 PF02503 Polyphosphate kinase middle domain LY388_RS15695 PF17941 Polyphosphate kinase C-terminal domain 1 LY388_RS15700 PF02541 Ppx/GppA phosphatase family LY388_RS15705 PF12849 PBP superfamily domain LY388_RS15710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS15710 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS15710 PF00989 PAS fold LY388_RS15710 PF11808 Phosphate regulon sensor protein PhoR LY388_RS15715 PF00072 Response regulator receiver domain LY388_RS15715 PF00486 Transcriptional regulatory protein, C terminal LY388_RS15720 PF04381 Putative exonuclease, RdgC LY388_RS15725 PF01136 Peptidase family U32 LY388_RS15725 PF16325 Peptidase family U32 C-terminal domain LY388_RS15730 PF00037 4Fe-4S binding domain LY388_RS15740 PF00881 Nitroreductase family LY388_RS15775 PF00004 ATPase family associated with various cellular activities (AAA) LY388_RS15775 PF07724 AAA domain (Cdc48 subfamily) LY388_RS15775 PF17871 AAA lid domain LY388_RS15775 PF02861 Clp amino terminal domain, pathogenicity island component LY388_RS15775 PF10431 C-terminal, D2-small domain, of ClpB protein LY388_RS15780 PF02578 Multi-copper polyphenol oxidoreductase laccase LY388_RS15785 PF01479 S4 domain LY388_RS15785 PF00849 RNA pseudouridylate synthase LY388_RS15790 PF13525 Outer membrane lipoprotein LY388_RS15795 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LY388_RS15800 PF01817 Chorismate mutase type II LY388_RS15800 PF00800 Prephenate dehydratase LY388_RS15805 PF13416 Bacterial extracellular solute-binding protein LY388_RS15810 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS15810 PF00563 EAL domain LY388_RS15815 PF01931 Protein of unknown function DUF84 LY388_RS15820 PF01371 Trp repressor protein LY388_RS15825 PF01464 Transglycosylase SLT domain LY388_RS15825 PF14718 Soluble lytic murein transglycosylase L domain LY388_RS15830 PF00005 ABC transporter LY388_RS15830 PF12848 ABC transporter LY388_RS15835 PF07238 PilZ domain LY388_RS15840 PF02153 Prephenate dehydrogenase LY388_RS15840 PF01817 Chorismate mutase type II LY388_RS15845 PF00793 DAHP synthetase I family LY388_RS15850 PF07694 5TMR of 5TMR-LYT LY388_RS15850 PF06580 Histidine kinase LY388_RS15855 PF04397 LytTr DNA-binding domain LY388_RS15855 PF00072 Response regulator receiver domain LY388_RS15860 PF00933 Glycosyl hydrolase family 3 N terminal domain LY388_RS15865 PF03702 Anhydro-N-acetylmuramic acid kinase LY388_RS15870 PF13580 SIS domain LY388_RS15885 PF02554 Carbon starvation protein CstA LY388_RS15890 PF02401 LytB protein LY388_RS15895 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LY388_RS15900 PF01252 Signal peptidase (SPase) II LY388_RS15905 PF00133 tRNA synthetases class I (I, L, M and V) LY388_RS15905 PF06827 Zinc finger found in FPG and IleRS LY388_RS15905 PF08264 Anticodon-binding domain of tRNA LY388_RS15910 PF06574 FAD synthetase LY388_RS15910 PF01687 Riboflavin kinase LY388_RS15915 PF03023 Lipid II flippase MurJ LY388_RS15920 PF01649 Ribosomal protein S20 LY388_RS15925 PF01022 Bacterial regulatory protein, arsR family LY388_RS15930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS15930 PF03466 LysR substrate binding domain LY388_RS15935 PF02690 Na+/Pi-cotransporter LY388_RS15940 PF00303 Thymidylate synthase LY388_RS15945 PF01790 Prolipoprotein diacylglyceryl transferase LY388_RS15950 PF01925 Sulfite exporter TauE/SafE LY388_RS15955 PF00391 PEP-utilising enzyme, mobile domain LY388_RS15955 PF05524 PEP-utilising enzyme, N-terminal LY388_RS15955 PF01590 GAF domain LY388_RS15955 PF02896 PEP-utilising enzyme, TIM barrel domain LY388_RS15960 PF00293 NUDIX domain LY388_RS15965 PF02976 DNA mismatch repair enzyme MutH LY388_RS15970 PF00248 Aldo/keto reductase family LY388_RS15980 PF02954 Bacterial regulatory protein, Fis family LY388_RS15980 PF00072 Response regulator receiver domain LY388_RS15980 PF00158 Sigma-54 interaction domain LY388_RS15985 PF00152 tRNA synthetases class II (D, K and N) LY388_RS15985 PF01336 OB-fold nucleic acid binding domain LY388_RS15995 PF05525 Branched-chain amino acid transport protein LY388_RS16000 PF05175 Methyltransferase small domain LY388_RS16005 PF00271 Helicase conserved C-terminal domain LY388_RS16005 PF00270 DEAD/DEAH box helicase LY388_RS16010 PF00009 Elongation factor Tu GTP binding domain LY388_RS16010 PF16658 Class II release factor RF3, C-terminal domain LY388_RS16010 PF03144 Elongation factor Tu domain 2 LY388_RS16015 PF01381 Helix-turn-helix LY388_RS16015 PF00717 Peptidase S24-like LY388_RS16055 PF00403 Heavy-metal-associated domain LY388_RS16055 PF07992 Pyridine nucleotide-disulphide oxidoreductase LY388_RS16055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LY388_RS16060 PF03203 MerC mercury resistance protein LY388_RS16065 PF00403 Heavy-metal-associated domain LY388_RS16070 PF02411 MerT mercuric transport protein LY388_RS16075 PF09278 MerR, DNA binding LY388_RS16075 PF00376 MerR family regulatory protein LY388_RS16085 PF06122 Conjugative relaxosome accessory transposon protein LY388_RS16115 PF04002 RadC-like JAB domain LY388_RS16120 PF00092 von Willebrand factor type A domain LY388_RS16140 PF07728 AAA domain (dynein-related subfamily) LY388_RS16160 PF00436 Single-strand binding protein family LY388_RS16175 PF00004 ATPase family associated with various cellular activities (AAA) LY388_RS16180 PF00082 Subtilase family LY388_RS16190 PF12705 PD-(D/E)XK nuclease superfamily LY388_RS16190 PF00580 UvrD/REP helicase N-terminal domain LY388_RS16190 PF13361 UvrD-like helicase C-terminal domain LY388_RS16195 PF06986 Type-1V conjugative transfer system mating pair stabilisation LY388_RS16200 PF06834 TraU protein LY388_RS16210 PF10502 Signal peptidase, peptidase S26 LY388_RS16220 PF12323 Helix-turn-helix domain LY388_RS16220 PF01385 Probable transposase LY388_RS16220 PF07282 Putative transposase DNA-binding domain LY388_RS16230 PF13098 Thioredoxin-like domain LY388_RS16230 PF10411 Disulfide bond isomerase protein N-terminus LY388_RS16235 PF00563 EAL domain LY388_RS16235 PF13426 PAS domain LY388_RS16235 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS16240 PF00582 Universal stress protein family LY388_RS16245 PF00916 Sulfate permease family LY388_RS16245 PF01740 STAS domain LY388_RS16365 PF11490 DNA polymerase III polC-type N-terminus II LY388_RS16365 PF07733 Bacterial DNA polymerase III alpha NTPase domain LY388_RS16365 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LY388_RS16365 PF14579 Helix-hairpin-helix motif LY388_RS16365 PF02811 PHP domain LY388_RS16365 PF00929 Exonuclease LY388_RS16370 PF00717 Peptidase S24-like LY388_RS16385 PF00809 Pterin binding enzyme LY388_RS16390 PF01636 Phosphotransferase enzyme family LY388_RS16395 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase LY388_RS16425 PF00186 Dihydrofolate reductase LY388_RS16435 PF13599 Pentapeptide repeats (9 copies) LY388_RS16445 PF01526 Tn3 transposase DDE domain LY388_RS16445 PF13700 Domain of unknown function (DUF4158) LY388_RS16450 PF11799 impB/mucB/samB family C-terminal domain LY388_RS16450 PF00817 impB/mucB/samB family LY388_RS16450 PF13438 Domain of unknown function (DUF4113) LY388_RS16480 PF03144 Elongation factor Tu domain 2 LY388_RS16480 PF16658 Class II release factor RF3, C-terminal domain LY388_RS16480 PF00009 Elongation factor Tu GTP binding domain LY388_RS16485 PF03707 Bacterial signalling protein N terminal repeat LY388_RS16485 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS16485 PF00563 EAL domain LY388_RS16500 PF13508 Acetyltransferase (GNAT) domain LY388_RS16505 PF02036 SCP-2 sterol transfer family LY388_RS16510 PF00563 EAL domain LY388_RS16510 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS16510 PF03707 Bacterial signalling protein N terminal repeat LY388_RS16515 PF01136 Peptidase family U32 LY388_RS16520 PF01136 Peptidase family U32 LY388_RS16535 PF07719 Tetratricopeptide repeat LY388_RS16535 PF13181 Tetratricopeptide repeat LY388_RS16540 PF00013 KH domain LY388_RS16540 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LY388_RS16540 PF03725 3' exoribonuclease family, domain 2 LY388_RS16540 PF00575 S1 RNA binding domain LY388_RS16540 PF01138 3' exoribonuclease family, domain 1 LY388_RS16545 PF00312 Ribosomal protein S15 LY388_RS16550 PF16198 tRNA pseudouridylate synthase B C-terminal domain LY388_RS16550 PF01509 TruB family pseudouridylate synthase (N terminal domain) LY388_RS16550 PF09157 Pseudouridine synthase II TruB, C-terminal LY388_RS16555 PF02033 Ribosome-binding factor A LY388_RS16560 PF00009 Elongation factor Tu GTP binding domain LY388_RS16560 PF11987 Translation-initiation factor 2 LY388_RS16560 PF08364 Bacterial translation initiation factor IF-2 associated region LY388_RS16560 PF04760 Translation initiation factor IF-2, N-terminal region LY388_RS16565 PF13184 NusA-like KH domain LY388_RS16565 PF08529 NusA N-terminal domain LY388_RS16565 PF00575 S1 RNA binding domain LY388_RS16570 PF02576 RimP N-terminal domain LY388_RS16570 PF17384 RimP C-terminal SH3 domain LY388_RS16585 PF03840 Preprotein translocase SecG subunit LY388_RS16590 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LY388_RS16590 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LY388_RS16590 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LY388_RS16590 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LY388_RS16595 PF00809 Pterin binding enzyme LY388_RS16600 PF00004 ATPase family associated with various cellular activities (AAA) LY388_RS16600 PF17862 AAA+ lid domain LY388_RS16600 PF06480 FtsH Extracellular LY388_RS16600 PF01434 Peptidase family M41 LY388_RS16605 PF01728 FtsJ-like methyltransferase LY388_RS16610 PF01985 CRS1 / YhbY (CRM) domain LY388_RS16615 PF01272 Transcription elongation factor, GreA/GreB, C-term LY388_RS16615 PF03449 Transcription elongation factor, N-terminal LY388_RS16620 PF13609 Gram-negative porin LY388_RS16625 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LY388_RS16630 PF01479 S4 domain LY388_RS16630 PF00579 tRNA synthetases class I (W and Y) LY388_RS16635 PF04225 Opacity-associated protein A LysM-like domain LY388_RS16635 PF01551 Peptidase family M23 LY388_RS16640 PF00873 AcrB/AcrD/AcrF family LY388_RS16650 PF01521 Iron-sulphur cluster biosynthesis LY388_RS16655 PF00202 Aminotransferase class-III LY388_RS16660 PF01594 AI-2E family transporter LY388_RS16665 PF08468 Methyltransferase small domain N-terminal LY388_RS16665 PF05175 Methyltransferase small domain LY388_RS16670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS16670 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS16670 PF09308 LuxQ, periplasmic LY388_RS16670 PF00072 Response regulator receiver domain LY388_RS16675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LY388_RS16680 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS16685 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS16685 PF12911 N-terminal TM domain of oligopeptide transport permease C LY388_RS16690 PF00005 ABC transporter LY388_RS16690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LY388_RS16695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LY388_RS16695 PF00005 ABC transporter LY388_RS16705 PF01869 BadF/BadG/BcrA/BcrD ATPase family LY388_RS16710 PF00728 Glycosyl hydrolase family 20, catalytic domain LY388_RS16710 PF02838 Glycosyl hydrolase family 20, domain 2 LY388_RS16715 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LY388_RS16715 PF06165 Glycosyltransferase family 36 LY388_RS16720 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LY388_RS16720 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LY388_RS16720 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LY388_RS16720 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LY388_RS16725 PF00005 ABC transporter LY388_RS16725 PF08402 TOBE domain LY388_RS16735 PF13416 Bacterial extracellular solute-binding protein LY388_RS16740 PF00909 Ammonium Transporter Family LY388_RS16745 PF00543 Nitrogen regulatory protein P-II LY388_RS16750 PF06062 Uncharacterised protein family (UPF0231) LY388_RS16755 PF11791 Aconitate B N-terminal domain LY388_RS16755 PF06434 Aconitate hydratase 2 N-terminus LY388_RS16755 PF00330 Aconitase family (aconitate hydratase) LY388_RS16760 PF01734 Patatin-like phospholipase LY388_RS16765 PF00912 Transglycosylase LY388_RS16765 PF00905 Penicillin binding protein transpeptidase domain LY388_RS16765 PF14814 Bifunctional transglycosylase second domain LY388_RS16770 PF00270 DEAD/DEAH box helicase LY388_RS16770 PF00271 Helicase conserved C-terminal domain LY388_RS16770 PF08482 ATP-dependent helicase C-terminal LY388_RS16770 PF04408 Helicase associated domain (HA2) LY388_RS16780 PF03749 Sugar fermentation stimulation protein RE domain LY388_RS16780 PF17746 SfsA N-terminal OB domain LY388_RS16785 PF01258 Prokaryotic dksA/traR C4-type zinc finger LY388_RS16790 PF00749 tRNA synthetases class I (E and Q), catalytic domain LY388_RS16795 PF01743 Poly A polymerase head domain LY388_RS16795 PF12626 Polymerase A arginine-rich C-terminus LY388_RS16795 PF12627 Probable RNA and SrmB- binding site of polymerase A LY388_RS16800 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LY388_RS16805 PF02548 Ketopantoate hydroxymethyltransferase LY388_RS16810 PF02569 Pantoate-beta-alanine ligase LY388_RS16815 PF01061 ABC-2 type transporter LY388_RS16820 PF00005 ABC transporter LY388_RS16825 PF01740 STAS domain LY388_RS16825 PF00916 Sulfate permease family LY388_RS16830 PF00484 Carbonic anhydrase LY388_RS16835 PF00156 Phosphoribosyl transferase domain LY388_RS16840 PF00440 Bacterial regulatory proteins, tetR family LY388_RS16845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LY388_RS16850 PF04348 LppC putative lipoprotein LY388_RS16855 PF02021 Uncharacterised protein family UPF0102 LY388_RS16860 PF13580 SIS domain LY388_RS16865 PF04972 BON domain LY388_RS16870 PF04386 Stringent starvation protein B LY388_RS16875 PF00043 Glutathione S-transferase, C-terminal domain LY388_RS16875 PF02798 Glutathione S-transferase, N-terminal domain LY388_RS16880 PF02167 Cytochrome C1 family LY388_RS16885 PF00033 Cytochrome b/b6/petB LY388_RS16885 PF00032 Cytochrome b(C-terminal)/b6/petD LY388_RS16890 PF00355 Rieske [2Fe-2S] domain LY388_RS16890 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LY388_RS16895 PF00380 Ribosomal protein S9/S16 LY388_RS16900 PF00572 Ribosomal protein L13 LY388_RS16905 PF03969 AFG1-like ATPase LY388_RS16915 PF00595 PDZ domain LY388_RS16920 PF13180 PDZ domain LY388_RS16925 PF01245 Ribosomal protein L19 LY388_RS16930 PF01746 tRNA (Guanine-1)-methyltransferase LY388_RS16935 PF05239 PRC-barrel domain LY388_RS16935 PF01782 RimM N-terminal domain LY388_RS16940 PF00886 Ribosomal protein S16 LY388_RS16945 PF00448 SRP54-type protein, GTPase domain LY388_RS16945 PF02881 SRP54-type protein, helical bundle domain LY388_RS16945 PF02978 Signal peptide binding domain LY388_RS16950 PF01578 Cytochrome C assembly protein LY388_RS16955 PF03471 Transporter associated domain LY388_RS16955 PF01595 Cyclin M transmembrane N-terminal domain LY388_RS16955 PF00571 CBS domain LY388_RS16960 PF02664 S-Ribosylhomocysteinase (LuxS) LY388_RS16965 PF04262 Glutamate-cysteine ligase LY388_RS16970 PF00675 Insulinase (Peptidase family M16) LY388_RS16970 PF05193 Peptidase M16 inactive domain LY388_RS16975 PF09335 SNARE associated Golgi protein LY388_RS16980 PF00107 Zinc-binding dehydrogenase LY388_RS16980 PF08240 Alcohol dehydrogenase GroES-like domain LY388_RS16985 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit LY388_RS16990 PF00364 Biotin-requiring enzyme LY388_RS16990 PF02436 Conserved carboxylase domain LY388_RS16990 PF00682 HMGL-like LY388_RS16995 PF04277 Oxaloacetate decarboxylase, gamma chain LY388_RS17040 PF02599 Global regulator protein family LY388_RS17045 PF00696 Amino acid kinase family LY388_RS17045 PF13840 ACT domain LY388_RS17045 PF01842 ACT domain LY388_RS17050 PF02272 DHHA1 domain LY388_RS17050 PF01411 tRNA synthetases class II (A) LY388_RS17050 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LY388_RS17055 PF02631 RecX family LY388_RS17060 PF00154 recA bacterial DNA recombination protein LY388_RS17065 PF02464 Competence-damaged protein LY388_RS17070 PF00005 ABC transporter LY388_RS17070 PF12857 TOBE-like domain LY388_RS17075 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS17080 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS17090 PF00291 Pyridoxal-phosphate dependent enzyme LY388_RS17095 PF05190 MutS family domain IV LY388_RS17095 PF01624 MutS domain I LY388_RS17095 PF05188 MutS domain II LY388_RS17095 PF05192 MutS domain III LY388_RS17095 PF00488 MutS domain V LY388_RS17100 PF04542 Sigma-70 region 2 LY388_RS17100 PF04539 Sigma-70 region 3 LY388_RS17100 PF04545 Sigma-70, region 4 LY388_RS17100 PF00140 Sigma-70 factor, region 1.2 LY388_RS17105 PF01476 LysM domain LY388_RS17105 PF01551 Peptidase family M23 LY388_RS17115 PF01975 Survival protein SurE LY388_RS17120 PF01142 tRNA pseudouridine synthase D (TruD) LY388_RS17125 PF02542 YgbB family LY388_RS17130 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LY388_RS17135 PF04977 Septum formation initiator LY388_RS17140 PF02673 Bacitracin resistance protein BacA LY388_RS17145 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LY388_RS17150 PF02152 Dihydroneopterin aldolase LY388_RS17155 PF02660 Glycerol-3-phosphate acyltransferase LY388_RS17160 PF00561 alpha/beta hydrolase fold LY388_RS17165 PF00814 Glycoprotease family LY388_RS17170 PF01165 Ribosomal protein S21 LY388_RS17175 PF09424 Yqey-like protein LY388_RS17180 PF10410 DnaB-helicase binding domain of primase LY388_RS17180 PF08278 DNA primase DnaG DnaB-binding LY388_RS17180 PF08275 DNA primase catalytic core, N-terminal domain LY388_RS17180 PF01807 CHC2 zinc finger LY388_RS17185 PF04546 Sigma-70, non-essential region LY388_RS17185 PF03979 Sigma-70 factor, region 1.1 LY388_RS17185 PF00140 Sigma-70 factor, region 1.2 LY388_RS17185 PF04542 Sigma-70 region 2 LY388_RS17185 PF04539 Sigma-70 region 3 LY388_RS17185 PF04545 Sigma-70, region 4 LY388_RS17200 PF03480 Bacterial extracellular solute-binding protein, family 7 LY388_RS17205 PF01380 SIS domain LY388_RS17210 PF08220 DeoR-like helix-turn-helix domain LY388_RS17210 PF00455 DeoR C terminal sensor domain LY388_RS17215 PF00224 Pyruvate kinase, barrel domain LY388_RS17215 PF02887 Pyruvate kinase, alpha/beta domain LY388_RS17220 PF04402 Protein of unknown function (DUF541) LY388_RS17225 PF03466 LysR substrate binding domain LY388_RS17225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS17230 PF01810 LysE type translocator LY388_RS17235 PF05552 Conserved TM helix LY388_RS17235 PF00924 Mechanosensitive ion channel LY388_RS17240 PF01116 Fructose-bisphosphate aldolase class-II LY388_RS17245 PF00162 Phosphoglycerate kinase LY388_RS17250 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LY388_RS17250 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LY388_RS17255 PF07715 TonB-dependent Receptor Plug Domain LY388_RS17255 PF00593 TonB dependent receptor LY388_RS17260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS17260 PF03466 LysR substrate binding domain LY388_RS17265 PF02779 Transketolase, pyrimidine binding domain LY388_RS17265 PF00456 Transketolase, thiamine diphosphate binding domain LY388_RS17265 PF02780 Transketolase, C-terminal domain LY388_RS17270 PF02772 S-adenosylmethionine synthetase, central domain LY388_RS17270 PF00438 S-adenosylmethionine synthetase, N-terminal domain LY388_RS17270 PF02773 S-adenosylmethionine synthetase, C-terminal domain LY388_RS17275 PF10263 SprT-like family LY388_RS17275 PF17283 SprT-like zinc ribbon domain LY388_RS17280 PF04231 Endonuclease I LY388_RS17285 PF04452 RNA methyltransferase LY388_RS17290 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LY388_RS17290 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LY388_RS17295 PF02622 Uncharacterized ACR, COG1678 LY388_RS17300 PF03652 Holliday junction resolvase LY388_RS17305 PF00579 tRNA synthetases class I (W and Y) LY388_RS17305 PF01479 S4 domain LY388_RS17315 PF00437 Type II/IV secretion system protein LY388_RS17320 PF00437 Type II/IV secretion system protein LY388_RS17325 PF01168 Alanine racemase, N-terminal domain LY388_RS17330 PF14748 Pyrroline-5-carboxylate reductase dimerisation LY388_RS17330 PF03807 NADP oxidoreductase coenzyme F420-dependent LY388_RS17335 PF02325 YGGT family LY388_RS17340 PF02594 Uncharacterised ACR, YggU family COG1872 LY388_RS17350 PF01725 Ham1 family LY388_RS17355 PF06969 HemN C-terminal domain LY388_RS17355 PF04055 Radical SAM superfamily LY388_RS17360 PF04960 Glutaminase LY388_RS17365 PF02390 Putative methyltransferase LY388_RS17370 PF10576 Iron-sulfur binding domain of endonuclease III LY388_RS17370 PF00633 Helix-hairpin-helix motif LY388_RS17370 PF00730 HhH-GPD superfamily base excision DNA repair protein LY388_RS17370 PF14815 NUDIX domain LY388_RS17375 PF04362 Bacterial Fe(2+) trafficking LY388_RS17380 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LY388_RS17380 PF01464 Transglycosylase SLT domain LY388_RS17405 PF12729 Four helix bundle sensory module for signal transduction LY388_RS17405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS17405 PF00672 HAMP domain LY388_RS17435 PF00226 DnaJ domain LY388_RS17435 PF05099 Tellurite resistance protein TerB LY388_RS17440 PF04453 LPS transport system D LY388_RS17440 PF03968 OstA-like protein LY388_RS17445 PF09312 SurA N-terminal domain LY388_RS17450 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LY388_RS17455 PF00398 Ribosomal RNA adenine dimethylase LY388_RS17460 PF04379 ApaG domain LY388_RS17465 PF00149 Calcineurin-like phosphoesterase LY388_RS17470 PF00186 Dihydrofolate reductase LY388_RS17475 PF12821 Threonine/Serine exporter, ThrE LY388_RS17480 PF06738 Putative threonine/serine exporter LY388_RS17485 PF01926 50S ribosome-binding GTPase LY388_RS17485 PF01018 GTP1/OBG LY388_RS17490 PF01016 Ribosomal L27 protein LY388_RS17495 PF00829 Ribosomal prokaryotic L21 protein LY388_RS17500 PF00348 Polyprenyl synthetase LY388_RS17505 PF13520 Amino acid permease LY388_RS17510 PF00056 lactate/malate dehydrogenase, NAD binding domain LY388_RS17510 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LY388_RS17515 PF01316 Arginine repressor, DNA binding domain LY388_RS17515 PF02863 Arginine repressor, C-terminal domain LY388_RS17520 PF16868 NMT1-like family LY388_RS17530 PF00582 Universal stress protein family LY388_RS17545 PF06877 Regulator of ribonuclease activity B LY388_RS17555 PF01523 Putative modulator of DNA gyrase LY388_RS17560 PF00795 Carbon-nitrogen hydrolase LY388_RS17565 PF13502 AsmA-like C-terminal region LY388_RS17565 PF13116 Protein of unknown function LY388_RS17570 PF10150 Ribonuclease E/G family LY388_RS17570 PF00575 S1 RNA binding domain LY388_RS17575 PF02545 Maf-like protein LY388_RS17580 PF04093 rod shape-determining protein MreD LY388_RS17585 PF04085 rod shape-determining protein MreC LY388_RS17620 PF07963 Prokaryotic N-terminal methylation motif LY388_RS17625 PF07963 Prokaryotic N-terminal methylation motif LY388_RS17635 PF00482 Type II secretion system (T2SS), protein F LY388_RS17640 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LY388_RS17640 PF00437 Type II/IV secretion system protein LY388_RS17650 PF13401 AAA domain LY388_RS17650 PF01471 Putative peptidoglycan binding domain LY388_RS17655 PF11741 AMIN domain LY388_RS17655 PF00263 Bacterial type II and III secretion system protein LY388_RS17655 PF03958 Bacterial type II/III secretion system short domain LY388_RS17655 PF07660 Secretin and TonB N terminus short domain LY388_RS17675 PF00563 EAL domain LY388_RS17675 PF17157 Gammaproteobacterial periplasmic sensor domain LY388_RS17675 PF00990 Diguanylate cyclase, GGDEF domain LY388_RS17680 PF00436 Single-strand binding protein family LY388_RS17685 PF00196 Bacterial regulatory proteins, luxR family LY388_RS17690 PF00483 Nucleotidyl transferase LY388_RS17695 PF17755 UvrA DNA-binding domain LY388_RS17695 PF17760 UvrA interaction domain LY388_RS17695 PF00005 ABC transporter LY388_RS17705 PF00266 Aminotransferase class-V LY388_RS17710 PF00696 Amino acid kinase family LY388_RS17710 PF01842 ACT domain LY388_RS17715 PF02574 Homocysteine S-methyltransferase LY388_RS17715 PF02310 B12 binding domain LY388_RS17715 PF02965 Vitamin B12 dependent methionine synthase, activation domain LY388_RS17715 PF00809 Pterin binding enzyme LY388_RS17715 PF02607 B12 binding domain LY388_RS17720 PF00999 Sodium/hydrogen exchanger family LY388_RS17755 PF01507 Phosphoadenosine phosphosulfate reductase family LY388_RS17760 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LY388_RS17760 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LY388_RS17765 PF00258 Flavodoxin LY388_RS17765 PF00175 Oxidoreductase NAD-binding domain LY388_RS17765 PF00667 FAD binding domain LY388_RS17785 PF09583 Phage shock protein G (Phageshock_PspG) LY388_RS17790 PF01207 Dihydrouridine synthase (Dus) LY388_RS17800 PF07669 Eco57I restriction-modification methylase LY388_RS17805 PF06616 BsuBI/PstI restriction endonuclease domain LY388_RS17805 PF17728 BsuBI/PstI restriction endonuclease HTH domain LY388_RS17815 PF02796 Helix-turn-helix domain of resolvase LY388_RS17815 PF00239 Resolvase, N terminal domain LY388_RS17855 PF06122 Conjugative relaxosome accessory transposon protein LY388_RS17895 PF13700 Domain of unknown function (DUF4158) LY388_RS17895 PF01526 Tn3 transposase DDE domain LY388_RS17900 PF02796 Helix-turn-helix domain of resolvase LY388_RS17900 PF00239 Resolvase, N terminal domain LY388_RS17905 PF08447 PAS fold LY388_RS17905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS17910 PF00593 TonB dependent receptor LY388_RS17910 PF07715 TonB-dependent Receptor Plug Domain LY388_RS17915 PF13737 Transposase DDE domain LY388_RS17930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS17930 PF17200 Single Cache domain 2 LY388_RS17930 PF00672 HAMP domain LY388_RS17950 PF01475 Ferric uptake regulator family LY388_RS17960 PF12706 Beta-lactamase superfamily domain LY388_RS17965 PF00342 Phosphoglucose isomerase LY388_RS17970 PF01894 Uncharacterised protein family UPF0047 LY388_RS17975 PF00842 Alanine racemase, C-terminal domain LY388_RS17975 PF01168 Alanine racemase, N-terminal domain LY388_RS17980 PF00772 DnaB-like helicase N terminal domain LY388_RS17980 PF03796 DnaB-like helicase C terminal domain LY388_RS17990 PF03948 Ribosomal protein L9, C-terminal domain LY388_RS17990 PF01281 Ribosomal protein L9, N-terminal domain LY388_RS17995 PF01084 Ribosomal protein S18 LY388_RS18000 PF00436 Single-strand binding protein family LY388_RS18005 PF01250 Ribosomal protein S6 LY388_RS18010 PF00210 Ferritin-like domain LY388_RS18015 PF04324 BFD-like [2Fe-2S] binding domain LY388_RS18020 PF03143 Elongation factor Tu C-terminal domain LY388_RS18020 PF03144 Elongation factor Tu domain 2 LY388_RS18020 PF00009 Elongation factor Tu GTP binding domain LY388_RS18025 PF03764 Elongation factor G, domain IV LY388_RS18025 PF14492 Elongation Factor G, domain II LY388_RS18025 PF00679 Elongation factor G C-terminus LY388_RS18025 PF00009 Elongation factor Tu GTP binding domain LY388_RS18025 PF03144 Elongation factor Tu domain 2 LY388_RS18030 PF00177 Ribosomal protein S7p/S5e LY388_RS18035 PF00164 Ribosomal protein S12/S23 LY388_RS18045 PF02635 DsrE/DsrF-like family LY388_RS18050 PF02635 DsrE/DsrF-like family LY388_RS18055 PF08348 YheO-like PAS domain LY388_RS18055 PF13309 HTH domain LY388_RS18060 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LY388_RS18060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LY388_RS18070 PF04102 SlyX LY388_RS18075 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LY388_RS18080 PF01145 SPFH domain / Band 7 family LY388_RS18085 PF12221 Bacterial membrane protein N terminal LY388_RS18085 PF01145 SPFH domain / Band 7 family LY388_RS18090 PF16360 GTP-binding GTPase Middle Region LY388_RS18090 PF13167 GTP-binding GTPase N-terminal LY388_RS18090 PF01926 50S ribosome-binding GTPase LY388_RS18095 PF17209 Hfq protein LY388_RS18105 PF01119 DNA mismatch repair protein, C-terminal domain LY388_RS18105 PF08676 MutL C terminal dimerisation domain LY388_RS18110 PF01520 N-acetylmuramoyl-L-alanine amidase LY388_RS18115 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LY388_RS18120 PF08331 Domain of unknown function (DUF1730) LY388_RS18165 PF00929 Exonuclease LY388_RS18170 PF03193 RsgA GTPase LY388_RS18175 PF02666 Phosphatidylserine decarboxylase LY388_RS18180 PF00939 Sodium:sulfate symporter transmembrane region LY388_RS18190 PF01676 Metalloenzyme superfamily LY388_RS18190 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LY388_RS18195 PF01551 Peptidase family M23 LY388_RS18205 PF08360 QacR-like protein, C-terminal region LY388_RS18205 PF00440 Bacterial regulatory proteins, tetR family LY388_RS18210 PF01208 Uroporphyrinogen decarboxylase (URO-D) LY388_RS18215 PF00293 NUDIX domain LY388_RS18215 PF09297 NADH pyrophosphatase zinc ribbon domain LY388_RS18220 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LY388_RS18230 PF04998 RNA polymerase Rpb1, domain 5 LY388_RS18230 PF05000 RNA polymerase Rpb1, domain 4 LY388_RS18230 PF04983 RNA polymerase Rpb1, domain 3 LY388_RS18230 PF00623 RNA polymerase Rpb1, domain 2 LY388_RS18230 PF04997 RNA polymerase Rpb1, domain 1 LY388_RS18235 PF10385 RNA polymerase beta subunit external 1 domain LY388_RS18235 PF04565 RNA polymerase Rpb2, domain 3 LY388_RS18235 PF04561 RNA polymerase Rpb2, domain 2 LY388_RS18235 PF04563 RNA polymerase beta subunit LY388_RS18235 PF00562 RNA polymerase Rpb2, domain 6 LY388_RS18235 PF04560 RNA polymerase Rpb2, domain 7 LY388_RS18240 PF00542 Ribosomal protein L7/L12 C-terminal domain LY388_RS18240 PF16320 Ribosomal protein L7/L12 dimerisation domain LY388_RS18245 PF00466 Ribosomal protein L10 LY388_RS18250 PF00687 Ribosomal protein L1p/L10e family LY388_RS18255 PF03946 Ribosomal protein L11, N-terminal domain LY388_RS18255 PF00298 Ribosomal protein L11, RNA binding domain LY388_RS18260 PF02357 Transcription termination factor nusG LY388_RS18260 PF00467 KOW motif LY388_RS18265 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LY388_RS18270 PF03143 Elongation factor Tu C-terminal domain LY388_RS18270 PF03144 Elongation factor Tu domain 2 LY388_RS18270 PF00009 Elongation factor Tu GTP binding domain LY388_RS18295 PF00485 Phosphoribulokinase / Uridine kinase family LY388_RS18300 PF08279 HTH domain LY388_RS18300 PF03099 Biotin/lipoate A/B protein ligase family LY388_RS18300 PF02237 Biotin protein ligase C terminal domain LY388_RS18305 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LY388_RS18305 PF01565 FAD binding domain LY388_RS18315 PF13091 PLD-like domain LY388_RS18385 PF00175 Oxidoreductase NAD-binding domain LY388_RS18390 PF00175 Oxidoreductase NAD-binding domain LY388_RS18390 PF00111 2Fe-2S iron-sulfur cluster binding domain LY388_RS18390 PF00970 Oxidoreductase FAD-binding domain LY388_RS18395 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LY388_RS18405 PF07497 Rho termination factor, RNA-binding domain LY388_RS18405 PF07498 Rho termination factor, N-terminal domain LY388_RS18405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LY388_RS18410 PF00085 Thioredoxin LY388_RS18415 PF00271 Helicase conserved C-terminal domain LY388_RS18415 PF00270 DEAD/DEAH box helicase LY388_RS18420 PF02541 Ppx/GppA phosphatase family LY388_RS18425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LY388_RS18425 PF00072 Response regulator receiver domain LY388_RS18425 PF00512 His Kinase A (phospho-acceptor) domain LY388_RS18425 PF09456 RcsC Alpha-Beta-Loop (ABL) LY388_RS18430 PF12832 MFS_1 like family LY388_RS18445 PF00501 AMP-binding enzyme LY388_RS18445 PF13193 AMP-binding enzyme C-terminal domain LY388_RS18445 PF16177 Acetyl-coenzyme A synthetase N-terminus LY388_RS18450 PF01220 Dehydroquinase class II LY388_RS18455 PF00364 Biotin-requiring enzyme LY388_RS18460 PF02785 Biotin carboxylase C-terminal domain LY388_RS18460 PF00289 Biotin carboxylase, N-terminal domain LY388_RS18460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LY388_RS18470 PF01207 Dihydrouridine synthase (Dus) LY388_RS18475 PF02954 Bacterial regulatory protein, Fis family LY388_RS18480 PF02661 Fic/DOC family LY388_RS18480 PF13784 Fic/DOC family N-terminal LY388_RS18485 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LY388_RS18485 PF00356 Bacterial regulatory proteins, lacI family LY388_RS18490 PF00920 Dehydratase family LY388_RS18495 PF01202 Shikimate kinase LY388_RS18500 PF02447 GntP family permease LY388_RS18505 PF01081 KDPG and KHG aldolase LY388_RS18510 PF07715 TonB-dependent Receptor Plug Domain LY388_RS18510 PF00593 TonB dependent receptor LY388_RS18525 PF17200 Single Cache domain 2 LY388_RS18525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS18525 PF00672 HAMP domain LY388_RS18530 PF01276 Orn/Lys/Arg decarboxylase, major domain LY388_RS18530 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LY388_RS18530 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LY388_RS18535 PF13520 Amino acid permease LY388_RS18540 PF18500 CadC C-terminal domain 1 LY388_RS18540 PF00486 Transcriptional regulatory protein, C terminal LY388_RS18545 PF13411 MerR HTH family regulatory protein LY388_RS18555 PF01808 AICARFT/IMPCHase bienzyme LY388_RS18555 PF02142 MGS-like domain LY388_RS18560 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LY388_RS18560 PF02843 Phosphoribosylglycinamide synthetase, C domain LY388_RS18560 PF02844 Phosphoribosylglycinamide synthetase, N domain LY388_RS18570 PF00216 Bacterial DNA-binding protein LY388_RS18575 PF01595 Cyclin M transmembrane N-terminal domain LY388_RS18575 PF00571 CBS domain LY388_RS18580 PF04222 Protein of unknown function (DUF416) LY388_RS18585 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LY388_RS18590 PF03167 Uracil DNA glycosylase superfamily LY388_RS18595 PF00924 Mechanosensitive ion channel LY388_RS18610 PF00753 Metallo-beta-lactamase superfamily LY388_RS18610 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LY388_RS18610 PF10996 Beta-Casp domain LY388_RS18620 PF00953 Glycosyl transferase family 4 LY388_RS18625 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LY388_RS18625 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LY388_RS18625 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LY388_RS18630 PF00535 Glycosyl transferase family 2 LY388_RS18655 PF02350 UDP-N-acetylglucosamine 2-epimerase LY388_RS18660 PF13807 G-rich domain on putative tyrosine kinase LY388_RS18660 PF02706 Chain length determinant protein LY388_RS18660 PF13614 AAA domain LY388_RS18665 PF01451 Low molecular weight phosphotyrosine protein phosphatase LY388_RS18670 PF10531 SLBB domain LY388_RS18670 PF02563 Polysaccharide biosynthesis/export protein LY388_RS18670 PF18412 Outer-membrane lipoprotein Wza C-terminal domain LY388_RS18680 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF LY388_RS18690 PF06082 Exopolysaccharide biosynthesis protein YbjH LY388_RS18700 PF02719 Polysaccharide biosynthesis protein LY388_RS18705 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LY388_RS18710 PF01575 MaoC like domain LY388_RS18715 PF14602 Hexapeptide repeat of succinyl-transferase LY388_RS18715 PF17836 PglD N-terminal domain LY388_RS18715 PF00132 Bacterial transferase hexapeptide (six repeats) LY388_RS18720 PF02397 Bacterial sugar transferase LY388_RS18730 PF02522 Aminoglycoside 3-N-acetyltransferase LY388_RS18740 PF00156 Phosphoribosyl transferase domain LY388_RS18765 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LY388_RS18770 PF00132 Bacterial transferase hexapeptide (six repeats) LY388_RS18775 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LY388_RS18775 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LY388_RS18775 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LY388_RS18780 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LY388_RS18790 PF01370 NAD dependent epimerase/dehydratase family LY388_RS18795 PF01522 Polysaccharide deacetylase LY388_RS18795 PF00457 Glycosyl hydrolases family 11 LY388_RS18815 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LY388_RS18820 PF04488 Glycosyltransferase sugar-binding region containing DXD motif LY388_RS18825 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LY388_RS18860 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LY388_RS18865 PF00535 Glycosyl transferase family 2 LY388_RS18870 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LY388_RS18875 PF01467 Cytidylyltransferase-like LY388_RS18880 PF06827 Zinc finger found in FPG and IleRS LY388_RS18880 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LY388_RS18880 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LY388_RS18890 PF00471 Ribosomal protein L33 LY388_RS18895 PF00830 Ribosomal L28 family LY388_RS18900 PF04002 RadC-like JAB domain LY388_RS18905 PF02743 Cache domain LY388_RS18905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LY388_RS18905 PF00672 HAMP domain LY388_RS18910 PF04127 DNA / pantothenate metabolism flavoprotein LY388_RS18910 PF02441 Flavoprotein LY388_RS18920 PF00440 Bacterial regulatory proteins, tetR family LY388_RS18925 PF03279 Bacterial lipid A biosynthesis acyltransferase LY388_RS18930 PF03279 Bacterial lipid A biosynthesis acyltransferase LY388_RS18935 PF00156 Phosphoribosyl transferase domain LY388_RS18940 PF03725 3' exoribonuclease family, domain 2 LY388_RS18940 PF01138 3' exoribonuclease family, domain 1 LY388_RS18945 PF03755 YicC-like family, N-terminal region LY388_RS18945 PF08340 Domain of unknown function (DUF1732) LY388_RS18950 PF03350 Uncharacterized protein family, UPF0114 LY388_RS18955 PF00367 phosphotransferase system, EIIB LY388_RS18955 PF02378 Phosphotransferase system, EIIC LY388_RS18960 PF13580 SIS domain LY388_RS18965 PF01380 SIS domain LY388_RS18965 PF01418 Helix-turn-helix domain, rpiR family LY388_RS18970 PF01032 FecCD transport family LY388_RS18975 PF01497 Periplasmic binding protein LY388_RS18980 PF00005 ABC transporter LY388_RS18985 PF07715 TonB-dependent Receptor Plug Domain LY388_RS18985 PF00593 TonB dependent receptor LY388_RS18990 PF00664 ABC transporter transmembrane region LY388_RS18990 PF00005 ABC transporter LY388_RS19005 PF00270 DEAD/DEAH box helicase LY388_RS19005 PF00271 Helicase conserved C-terminal domain LY388_RS19005 PF00570 HRDC domain LY388_RS19005 PF16124 RecQ zinc-binding LY388_RS19005 PF09382 RQC domain LY388_RS19010 PF00892 EamA-like transporter family LY388_RS19020 PF12833 Helix-turn-helix domain LY388_RS19025 PF01810 LysE type translocator LY388_RS19030 PF00580 UvrD/REP helicase N-terminal domain LY388_RS19030 PF13361 UvrD-like helicase C-terminal domain LY388_RS19035 PF01432 Peptidase family M3 LY388_RS19040 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LY388_RS19045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LY388_RS19045 PF07992 Pyridine nucleotide-disulphide oxidoreductase LY388_RS19055 PF12911 N-terminal TM domain of oligopeptide transport permease C LY388_RS19055 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS19060 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS19065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LY388_RS19070 PF00005 ABC transporter LY388_RS19070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LY388_RS19105 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LY388_RS19110 PF13361 UvrD-like helicase C-terminal domain LY388_RS19110 PF00580 UvrD/REP helicase N-terminal domain LY388_RS19115 PF00440 Bacterial regulatory proteins, tetR family LY388_RS19120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LY388_RS19125 PF00873 AcrB/AcrD/AcrF family LY388_RS19130 PF04380 Membrane fusogenic activity LY388_RS19135 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LY388_RS19135 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LY388_RS19140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS19140 PF03466 LysR substrate binding domain LY388_RS19210 PF12724 Flavodoxin domain LY388_RS19215 PF02386 Cation transport protein LY388_RS19220 PF09186 Domain of unknown function (DUF1949) LY388_RS19220 PF01205 Uncharacterized protein family UPF0029 LY388_RS19225 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LY388_RS19225 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LY388_RS19225 PF00378 Enoyl-CoA hydratase/isomerase LY388_RS19230 PF02803 Thiolase, C-terminal domain LY388_RS19230 PF00108 Thiolase, N-terminal domain LY388_RS19235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LY388_RS19235 PF03466 LysR substrate binding domain LY388_RS19240 PF07690 Major Facilitator Superfamily LY388_RS19245 PF00132 Bacterial transferase hexapeptide (six repeats) LY388_RS19245 PF12804 MobA-like NTP transferase domain LY388_RS19250 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LY388_RS19250 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LY388_RS19255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LY388_RS19255 PF02874 ATP synthase alpha/beta family, beta-barrel domain LY388_RS19260 PF00231 ATP synthase LY388_RS19265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LY388_RS19265 PF00306 ATP synthase alpha/beta chain, C terminal domain LY388_RS19265 PF02874 ATP synthase alpha/beta family, beta-barrel domain LY388_RS19270 PF00213 ATP synthase delta (OSCP) subunit LY388_RS19275 PF00430 ATP synthase B/B' CF(0) LY388_RS19280 PF00137 ATP synthase subunit C LY388_RS19285 PF00119 ATP synthase A chain LY388_RS19290 PF03899 ATP synthase I chain LY388_RS19295 PF02195 ParB-like nuclease domain LY388_RS19295 PF17762 HTH domain found in ParB protein LY388_RS19300 PF13614 AAA domain LY388_RS19305 PF02527 rRNA small subunit methyltransferase G LY388_RS19310 PF01134 Glucose inhibited division protein A LY388_RS19310 PF13932 GidA associated domain LY388_RS19315 PF00258 Flavodoxin LY388_RS19345 PF02384 N-6 DNA Methylase LY388_RS19395 PF02899 Phage integrase, N-terminal SAM-like domain LY388_RS19395 PF00589 Phage integrase family LY388_RS19400 PF01926 50S ribosome-binding GTPase LY388_RS19400 PF12631 MnmE helical domain LY388_RS19400 PF10396 GTP-binding protein TrmE N-terminus LY388_RS19405 PF02096 60Kd inner membrane protein LY388_RS19405 PF14849 YidC periplasmic domain LY388_RS19410 PF01809 Putative membrane protein insertion efficiency factor LY388_RS19415 PF00825 Ribonuclease P LY388_RS19420 PF00468 Ribosomal protein L34 LY388_RS19425 PF00005 ABC transporter LY388_RS19430 PF00528 Binding-protein-dependent transport system inner membrane component LY388_RS19435 PF00497 Bacterial extracellular solute-binding proteins, family 3 LY388_RS19460 PF00436 Single-strand binding protein family LY388_RS19520 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system LY388_RS19585 PF02534 Type IV secretory system Conjugative DNA transfer LY388_RS19595 PF01464 Transglycosylase SLT domain LY388_RS19635 PF00437 Type II/IV secretion system protein LY388_RS19670 PF00437 Type II/IV secretion system protein LY388_RS19675 PF03743 Bacterial conjugation TrbI-like protein LY388_RS19680 PF03524 Conjugal transfer protein LY388_RS19685 PF04335 VirB8 protein LY388_RS19700 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LY388_RS19720 PF01381 Helix-turn-helix