O3Y_RS00025	SM01234	O3Y_RS00025
O3Y_RS00040	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS00050	SM00062	Bacterial periplasmic substrate-binding proteins
O3Y_RS00055	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS00055	SM00760	Bacterial dnaA protein helix-turn-helix domain
O3Y_RS00060	SM00480	DNA polymerase III beta subunit
O3Y_RS00070	SM00387	Histidine kinase-like ATPases
O3Y_RS00070	SM00433	TopoisomeraseII
O3Y_RS00125	SM00829	Enoylreductase
O3Y_RS00155	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS00160	SM00563	Phosphate acyltransferases
O3Y_RS00230	SM00257	Lysin motif
O3Y_RS00255	SM01001	AIR carboxylase
O3Y_RS00350	SM00876	Biotin and Thiamin Synthesis associated domain
O3Y_RS00375	SM00344	helix_turn_helix ASNC type
O3Y_RS00380	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS00380	SM00091	PAS domain
O3Y_RS00380	SM00267	diguanylate cyclase
O3Y_RS00485	SM00563	Phosphate acyltransferases
O3Y_RS00510	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
O3Y_RS00510	SM00091	PAS domain
O3Y_RS00510	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS00520	SM00450	Rhodanese Homology Domain
O3Y_RS00535	SM01004	Delta-aminolevulinic acid dehydratase
O3Y_RS00545	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
O3Y_RS00545	SM00474	3'-5' exonuclease
O3Y_RS00545	SM00475	5'-3' exonuclease
O3Y_RS00545	SM00482	DNA polymerase A domain
O3Y_RS00575	SM00729	Elongator protein 3, MiaB family, Radical SAM
O3Y_RS00610	SM01219	O3Y_RS00610
O3Y_RS00645	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS00645	SM00267	diguanylate cyclase
O3Y_RS00645	SM00897	FIST N domain
O3Y_RS00645	SM01204	O3Y_RS00645
O3Y_RS00650	SM01144	O3Y_RS00650
O3Y_RS00725	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS00725	SM00962	SRP54-type protein, GTPase domain
O3Y_RS00725	SM00963	SRP54-type protein, helical bundle domain
O3Y_RS00730	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS00780	SM00360	RNA recognition motif
O3Y_RS00885	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS00920	SM00530	Helix-turn-helix XRE-family like proteins 
O3Y_RS01000	SM00342	helix_turn_helix, arabinose operon control protein
O3Y_RS01015	SM00341	Helicase and RNase D C-terminal
O3Y_RS01015	SM00487	DEAD-like helicases superfamily
O3Y_RS01015	SM00490	helicase superfamily c-terminal domain
O3Y_RS01015	SM00956	O3Y_RS01015
O3Y_RS01030	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS01040	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS01115	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS01115	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS01115	SM01049	O3Y_RS01115
O3Y_RS01140	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
O3Y_RS01140	SM01232	O3Y_RS01140
O3Y_RS01265	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS01345	SM00849	Metallo-beta-lactamase superfamily
O3Y_RS01345	SM01027	Beta-Casp domain
O3Y_RS01355	SM00986	Uracil DNA glycosylase superfamily
O3Y_RS01355	SM00987	UreE urease accessory protein, C-terminal domain 
O3Y_RS01390	SM00411	bacterial (prokaryotic) histone like domain
O3Y_RS01400	SM01209	O3Y_RS01400
O3Y_RS01400	SM01210	O3Y_RS01400
O3Y_RS01405	SM00798	AICARFT/IMPCHase bienzyme
O3Y_RS01405	SM00851	MGS-like domain
O3Y_RS01410	SM00422	helix_turn_helix, mercury resistance
O3Y_RS01415	SM00862	Transcriptional regulatory protein, C terminal
O3Y_RS01430	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS01430	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS01430	SM01049	O3Y_RS01430
O3Y_RS01470	SM00354	helix_turn _helix lactose operon repressor
O3Y_RS01490	SM00878	Biotin carboxylase C-terminal domain
O3Y_RS01510	SM00479	O3Y_RS01510
O3Y_RS01530	SM00387	Histidine kinase-like ATPases
O3Y_RS01530	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS01530	SM00448	cheY-homologous receiver domain
O3Y_RS01540	SM00487	DEAD-like helicases superfamily
O3Y_RS01540	SM00490	helicase superfamily c-terminal domain
O3Y_RS01550	SM00357	Cold shock protein domain
O3Y_RS01550	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS01550	SM00959	Rho termination factor, N-terminal domain
O3Y_RS01605	SM00155	Phospholipase D. Active site motifs.
O3Y_RS01665	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
O3Y_RS01665	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
O3Y_RS01670	SM00649	Ribosomal protein L11/L12
O3Y_RS01695	SM00663	RNA polymerase I subunit A N-terminus
O3Y_RS01755	SM00479	O3Y_RS01755
O3Y_RS01810	SM00257	Lysin motif
O3Y_RS01810	SM00646	O3Y_RS01810
O3Y_RS01815	SM00853	MutL C terminal dimerisation domain
O3Y_RS01815	SM01340	O3Y_RS01815
O3Y_RS01835	SM00244	prohibitin homologues
O3Y_RS01840	SM00244	prohibitin homologues
O3Y_RS01855	SM00320	WD40 repeats
O3Y_RS01895	SM00838	Elongation factor G C-terminus
O3Y_RS01895	SM00889	Elongation factor G, domain IV
O3Y_RS01940	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS01945	SM01005	Alanine racemase, C-terminal domain
O3Y_RS02050	SM01018	B12 binding domain
O3Y_RS02080	SM00421	helix_turn_helix, Lux Regulon
O3Y_RS02090	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS02090	SM00267	diguanylate cyclase
O3Y_RS02110	SM00965	Secretin and TonB N terminus short domain
O3Y_RS02120	SM00028	Tetratricopeptide repeats
O3Y_RS02125	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS02195	SM00316	Ribosomal protein S1-like RNA-binding domain
O3Y_RS02310	SM00650	Ribosomal RNA adenine dimethylases
O3Y_RS02330	SM00271	DnaJ molecular chaperone homology domain
O3Y_RS02360	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS02360	SM01049	O3Y_RS02360
O3Y_RS02395	SM00478	endonuclease III
O3Y_RS02395	SM00525	O3Y_RS02395
O3Y_RS02410	SM00729	Elongator protein 3, MiaB family, Radical SAM
O3Y_RS02425	SM01152	O3Y_RS02425
O3Y_RS02445	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS02455	SM00421	helix_turn_helix, Lux Regulon
O3Y_RS02460	SM00363	S4 RNA-binding domain
O3Y_RS02465	SM00732	Likely ribonuclease with RNase H fold.
O3Y_RS02490	SM00731	SprT homologues.
O3Y_RS02505	SM00861	Transketolase, pyrimidine binding domain
O3Y_RS02520	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
O3Y_RS02565	SM00420	helix_turn_helix, Deoxyribose operon repressor
O3Y_RS02565	SM01134	O3Y_RS02565
O3Y_RS02580	SM00563	Phosphate acyltransferases
O3Y_RS02735	SM00400	zinc finger
O3Y_RS02735	SM00493	O3Y_RS02735
O3Y_RS02735	SM00766	DNA primase DnaG DnaB-binding
O3Y_RS02760	SM01207	O3Y_RS02760
O3Y_RS02765	SM00905	Dihydroneopterin aldolase
O3Y_RS02810	SM00257	Lysin motif
O3Y_RS02820	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
O3Y_RS02820	SM00534	ATPase domain of DNA mismatch repair MUTS family
O3Y_RS02845	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS02855	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS02865	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
O3Y_RS02940	SM00829	Enoylreductase
O3Y_RS02965	SM01091	Transporter associated domain
O3Y_RS02975	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS02975	SM00962	SRP54-type protein, GTPase domain
O3Y_RS02975	SM00963	SRP54-type protein, helical bundle domain
O3Y_RS03000	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
O3Y_RS03005	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
O3Y_RS03060	SM00749	bacterial OsmY and nodulation domain
O3Y_RS03085	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS03135	SM00487	DEAD-like helicases superfamily
O3Y_RS03135	SM00490	helicase superfamily c-terminal domain
O3Y_RS03135	SM00847	Helicase associated domain (HA2)  Add an annotation
O3Y_RS03160	SM00938	Nitrogen regulatory protein P-II
O3Y_RS03180	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS03190	SM01068	Putative carbohydrate binding domain
O3Y_RS03210	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS03215	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS03240	SM00091	PAS domain
O3Y_RS03240	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS03240	SM00387	Histidine kinase-like ATPases
O3Y_RS03240	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS03240	SM00448	cheY-homologous receiver domain
O3Y_RS03290	SM00363	S4 RNA-binding domain
O3Y_RS03310	SM01103	O3Y_RS03310
O3Y_RS03320	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS03355	SM00316	Ribosomal protein S1-like RNA-binding domain
O3Y_RS03355	SM00322	K homology RNA-binding domain
O3Y_RS03375	SM01387	O3Y_RS03375
O3Y_RS03380	SM00316	Ribosomal protein S1-like RNA-binding domain
O3Y_RS03380	SM00322	K homology RNA-binding domain
O3Y_RS03385	SM00028	Tetratricopeptide repeats
O3Y_RS03390	SM00347	helix_turn_helix multiple antibiotic resistance protein
O3Y_RS03410	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS03410	SM00091	PAS domain
O3Y_RS03410	SM00267	diguanylate cyclase
O3Y_RS03435	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS03435	SM00267	diguanylate cyclase
O3Y_RS03445	SM00487	DEAD-like helicases superfamily
O3Y_RS03445	SM00490	helicase superfamily c-terminal domain
O3Y_RS03460	SM00937	O3Y_RS03460
O3Y_RS03470	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS03485	SM00927	DNA mismatch repair enzyme MutH
O3Y_RS03500	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
O3Y_RS03530	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
O3Y_RS03545	SM00904	Riboflavin kinase
O3Y_RS03600	SM00448	cheY-homologous receiver domain
O3Y_RS03600	SM00850	LytTr DNA-binding domain
O3Y_RS03615	SM00830	Chorismate mutase type II
O3Y_RS03625	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS03645	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS03645	SM00267	diguanylate cyclase
O3Y_RS03655	SM00830	Chorismate mutase type II
O3Y_RS03670	SM00363	S4 RNA-binding domain
O3Y_RS03680	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS03680	SM01086	C-terminal, D2-small domain, of ClpB protein
O3Y_RS03735	SM00448	cheY-homologous receiver domain
O3Y_RS03735	SM00862	Transcriptional regulatory protein, C terminal
O3Y_RS03740	SM00091	PAS domain
O3Y_RS03740	SM00387	Histidine kinase-like ATPases
O3Y_RS03740	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS03770	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS03810	SM00116	Domain in cystathionine beta-synthase and other proteins.
O3Y_RS03830	SM01323	O3Y_RS03830
O3Y_RS03875	SM00271	DnaJ molecular chaperone homology domain
O3Y_RS03900	SM00562	O3Y_RS03900
O3Y_RS03910	SM00530	Helix-turn-helix XRE-family like proteins 
O3Y_RS03930	SM00564	beta-propeller repeat
O3Y_RS03935	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS03955	SM00116	Domain in cystathionine beta-synthase and other proteins.
O3Y_RS03955	SM01240	O3Y_RS03955
O3Y_RS03965	SM00495	Chitin-binding domain type 3
O3Y_RS04015	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS04030	SM00849	Metallo-beta-lactamase superfamily
O3Y_RS04060	SM00448	cheY-homologous receiver domain
O3Y_RS04065	SM00091	PAS domain
O3Y_RS04065	SM00387	Histidine kinase-like ATPases
O3Y_RS04090	SM00764	Citrate lyase ligase C-terminal domain
O3Y_RS04165	SM00487	DEAD-like helicases superfamily
O3Y_RS04165	SM00490	helicase superfamily c-terminal domain
O3Y_RS04175	SM00530	Helix-turn-helix XRE-family like proteins 
O3Y_RS04210	SM00060	Fibronectin type 3 domain
O3Y_RS04215	SM00247	Beta/gamma crystallins
O3Y_RS04230	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS04235	SM00862	Transcriptional regulatory protein, C terminal
O3Y_RS04295	SM00342	helix_turn_helix, arabinose operon control protein
O3Y_RS04305	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS04305	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS04330	SM01276	O3Y_RS04330
O3Y_RS04385	SM00271	DnaJ molecular chaperone homology domain
O3Y_RS04435	SM00062	Bacterial periplasmic substrate-binding proteins
O3Y_RS04445	SM01211	O3Y_RS04445
O3Y_RS04450	SM01321	O3Y_RS04450
O3Y_RS04535	SM00861	Transketolase, pyrimidine binding domain
O3Y_RS04560	SM00981	O3Y_RS04560
O3Y_RS04580	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
O3Y_RS04580	SM00475	5'-3' exonuclease
O3Y_RS04590	SM00267	diguanylate cyclase
O3Y_RS04595	SM00028	Tetratricopeptide repeats
O3Y_RS04625	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS04625	SM00930	O3Y_RS04625
O3Y_RS04635	SM00354	helix_turn _helix lactose operon repressor
O3Y_RS04645	SM00642	Alpha-amylase domain
O3Y_RS04680	SM00226	Low molecular weight phosphatase family
O3Y_RS04690	SM00984	UDP binding domain
O3Y_RS04745	SM00710	Parallel beta-helix repeats
O3Y_RS04810	SM00729	Elongator protein 3, MiaB family, Radical SAM
O3Y_RS04830	SM00936	Penicillin-binding protein 5, C-terminal domain 
O3Y_RS04885	SM00116	Domain in cystathionine beta-synthase and other proteins.
O3Y_RS04885	SM01091	Transporter associated domain
O3Y_RS04900	SM00729	Elongator protein 3, MiaB family, Radical SAM
O3Y_RS04940	SM00771	ZipA, C-terminal domain (FtsZ-binding)
O3Y_RS04945	SM00278	Helix-hairpin-helix DNA-binding motif class 1
O3Y_RS04945	SM00292	breast cancer carboxy-terminal domain
O3Y_RS04945	SM00532	Ligase N family
O3Y_RS04960	SM00422	helix_turn_helix, mercury resistance
O3Y_RS04970	SM00244	prohibitin homologues
O3Y_RS05005	SM00862	Transcriptional regulatory protein, C terminal
O3Y_RS05010	SM00387	Histidine kinase-like ATPases
O3Y_RS05030	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
O3Y_RS05030	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
O3Y_RS05105	SM00479	O3Y_RS05105
O3Y_RS05130	SM00478	endonuclease III
O3Y_RS05130	SM00525	O3Y_RS05130
O3Y_RS05140	SM00900	O3Y_RS05140
O3Y_RS05170	SM00487	DEAD-like helicases superfamily
O3Y_RS05170	SM00490	helicase superfamily c-terminal domain
O3Y_RS05180	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS05180	SM00448	cheY-homologous receiver domain
O3Y_RS05195	SM00729	Elongator protein 3, MiaB family, Radical SAM
O3Y_RS05200	SM00852	Probable molybdopterin binding domain
O3Y_RS05220	SM00267	diguanylate cyclase
O3Y_RS05225	SM00116	Domain in cystathionine beta-synthase and other proteins.
O3Y_RS05280	SM00226	Low molecular weight phosphatase family
O3Y_RS05325	SM00448	cheY-homologous receiver domain
O3Y_RS05345	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS05355	SM00493	O3Y_RS05355
O3Y_RS05385	SM00344	helix_turn_helix ASNC type
O3Y_RS05410	SM00062	Bacterial periplasmic substrate-binding proteins
O3Y_RS05410	SM00267	diguanylate cyclase
O3Y_RS05415	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
O3Y_RS05420	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
O3Y_RS05435	SM00495	Chitin-binding domain type 3
O3Y_RS05435	SM00636	O3Y_RS05435
O3Y_RS05450	SM00342	helix_turn_helix, arabinose operon control protein
O3Y_RS05475	SM00448	cheY-homologous receiver domain
O3Y_RS05480	SM00448	cheY-homologous receiver domain
O3Y_RS05490	SM00387	Histidine kinase-like ATPases
O3Y_RS05490	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS05495	SM00387	Histidine kinase-like ATPases
O3Y_RS05500	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS05500	SM00448	cheY-homologous receiver domain
O3Y_RS05505	SM00448	cheY-homologous receiver domain
O3Y_RS05510	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS05510	SM00387	Histidine kinase-like ATPases
O3Y_RS05535	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS05540	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS05580	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS05585	SM00267	diguanylate cyclase
O3Y_RS05605	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS05620	SM00729	Elongator protein 3, MiaB family, Radical SAM
O3Y_RS05620	SM00876	Biotin and Thiamin Synthesis associated domain
O3Y_RS05710	SM00528	Domain in histone-like proteins of HNS family
O3Y_RS05770	SM00357	Cold shock protein domain
O3Y_RS05780	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS05780	SM01086	C-terminal, D2-small domain, of ClpB protein
O3Y_RS05835	SM00448	cheY-homologous receiver domain
O3Y_RS05840	SM00387	Histidine kinase-like ATPases
O3Y_RS05935	SM00481	DNA polymerase alpha chain like domain
O3Y_RS05945	SM00363	S4 RNA-binding domain
O3Y_RS05950	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS05955	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS05975	SM00267	diguanylate cyclase
O3Y_RS05990	SM00919	Malic enzyme, NAD binding domain
O3Y_RS05990	SM01274	O3Y_RS05990
O3Y_RS06015	SM00271	DnaJ molecular chaperone homology domain
O3Y_RS06015	SM00671	Sel1-like repeats.
O3Y_RS06045	SM00020	Trypsin-like serine protease
O3Y_RS06075	SM00345	helix_turn_helix gluconate operon transcriptional repressor
O3Y_RS06075	SM00866	O3Y_RS06075
O3Y_RS06090	SM00841	Elongation factor P, C-terminal
O3Y_RS06090	SM01185	O3Y_RS06090
O3Y_RS06100	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS06105	SM00486	DNA polymerase type-B family
O3Y_RS06110	SM00421	helix_turn_helix, Lux Regulon
O3Y_RS06110	SM00448	cheY-homologous receiver domain
O3Y_RS06115	SM00278	Helix-hairpin-helix DNA-binding motif class 1
O3Y_RS06115	SM00465	GIY-YIG type nucleases (URI domain)
O3Y_RS06145	SM00267	diguanylate cyclase
O3Y_RS06160	SM00873	B3/4 domain
O3Y_RS06160	SM00874	tRNA synthetase B5 domain
O3Y_RS06160	SM00896	Ferredoxin-fold anticodon binding domain
O3Y_RS06165	SM00411	bacterial (prokaryotic) histone like domain
O3Y_RS06245	SM00855	Phosphoglycerate mutase family
O3Y_RS06260	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS06275	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS06275	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS06275	SM01049	O3Y_RS06275
O3Y_RS06290	SM00852	Probable molybdopterin binding domain
O3Y_RS06320	SM00434	DNA Topoisomerase IV
O3Y_RS06325	SM00450	Rhodanese Homology Domain
O3Y_RS06330	SM00342	helix_turn_helix, arabinose operon control protein
O3Y_RS06380	SM00849	Metallo-beta-lactamase superfamily
O3Y_RS06410	SM00387	Histidine kinase-like ATPases
O3Y_RS06410	SM01049	O3Y_RS06410
O3Y_RS06415	SM00421	helix_turn_helix, Lux Regulon
O3Y_RS06415	SM00448	cheY-homologous receiver domain
O3Y_RS06420	SM00347	helix_turn_helix multiple antibiotic resistance protein
O3Y_RS06430	SM00495	Chitin-binding domain type 3
O3Y_RS06460	SM00354	helix_turn _helix lactose operon repressor
O3Y_RS06475	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS06475	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS06480	SM00479	O3Y_RS06480
O3Y_RS06485	SM00100	Cyclic nucleotide-monophosphate binding domain
O3Y_RS06485	SM00116	Domain in cystathionine beta-synthase and other proteins.
O3Y_RS06505	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS06520	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS06520	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS06570	SM00091	PAS domain
O3Y_RS06570	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS06590	SM01005	Alanine racemase, C-terminal domain
O3Y_RS06595	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS06595	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS06605	SM00387	Histidine kinase-like ATPases
O3Y_RS06610	SM00448	cheY-homologous receiver domain
O3Y_RS06625	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS06625	SM00387	Histidine kinase-like ATPases
O3Y_RS06625	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS06630	SM00448	cheY-homologous receiver domain
O3Y_RS06630	SM00862	Transcriptional regulatory protein, C terminal
O3Y_RS06665	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS06700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
O3Y_RS06700	SM00895	O3Y_RS06700
O3Y_RS06765	SM00448	cheY-homologous receiver domain
O3Y_RS06765	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
O3Y_RS06770	SM00073	Histidine Phosphotransfer domain
O3Y_RS06770	SM00091	PAS domain
O3Y_RS06770	SM00387	Histidine kinase-like ATPases
O3Y_RS06770	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS06770	SM00448	cheY-homologous receiver domain
O3Y_RS06785	SM00267	diguanylate cyclase
O3Y_RS06790	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
O3Y_RS06810	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS06825	SM00062	Bacterial periplasmic substrate-binding proteins
O3Y_RS06850	SM00028	Tetratricopeptide repeats
O3Y_RS06850	SM00267	diguanylate cyclase
O3Y_RS06865	SM00267	diguanylate cyclase
O3Y_RS06875	SM00267	diguanylate cyclase
O3Y_RS06895	SM00267	diguanylate cyclase
O3Y_RS06895	SM01079	O3Y_RS06895
O3Y_RS06900	SM00479	O3Y_RS06900
O3Y_RS06925	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS06925	SM00487	DEAD-like helicases superfamily
O3Y_RS06925	SM00490	helicase superfamily c-terminal domain
O3Y_RS06925	SM00847	Helicase associated domain (HA2)  Add an annotation
O3Y_RS06970	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS06975	SM00448	cheY-homologous receiver domain
O3Y_RS06985	SM00073	Histidine Phosphotransfer domain
O3Y_RS06985	SM00260	Two component signalling adaptor domain
O3Y_RS06985	SM00387	Histidine kinase-like ATPases
O3Y_RS06985	SM01231	O3Y_RS06985
O3Y_RS06990	SM00448	cheY-homologous receiver domain
O3Y_RS06995	SM00138	Methyltransferase, chemotaxis proteins 
O3Y_RS07005	SM00448	cheY-homologous receiver domain
O3Y_RS07010	SM00260	Two component signalling adaptor domain
O3Y_RS07015	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS07020	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS07020	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS07025	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
O3Y_RS07025	SM00091	PAS domain
O3Y_RS07025	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS07030	SM00487	DEAD-like helicases superfamily
O3Y_RS07030	SM00490	helicase superfamily c-terminal domain
O3Y_RS07055	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS07055	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS07135	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS07165	SM00100	Cyclic nucleotide-monophosphate binding domain
O3Y_RS07165	SM00419	helix_turn_helix, cAMP Regulatory protein
O3Y_RS07215	SM00897	FIST N domain
O3Y_RS07215	SM01204	O3Y_RS07215
O3Y_RS07220	SM00387	Histidine kinase-like ATPases
O3Y_RS07220	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS07220	SM00448	cheY-homologous receiver domain
O3Y_RS07225	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS07235	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS07270	SM00530	Helix-turn-helix XRE-family like proteins 
O3Y_RS07315	SM00530	Helix-turn-helix XRE-family like proteins 
O3Y_RS07330	SM00530	Helix-turn-helix XRE-family like proteins 
O3Y_RS07360	SM00530	Helix-turn-helix XRE-family like proteins 
O3Y_RS07425	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS07435	SM00981	O3Y_RS07435
O3Y_RS07690	SM00482	DNA polymerase A domain
O3Y_RS07695	SM00493	O3Y_RS07695
O3Y_RS07750	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
O3Y_RS07750	SM00245	tail specific protease
O3Y_RS07755	SM00945	ProQ/FINO family
O3Y_RS07765	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS07785	SM00316	Ribosomal protein S1-like RNA-binding domain
O3Y_RS07830	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
O3Y_RS07865	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS07870	SM00387	Histidine kinase-like ATPases
O3Y_RS07870	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS07875	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS07875	SM00448	cheY-homologous receiver domain
O3Y_RS07890	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS07900	SM00852	Probable molybdopterin binding domain
O3Y_RS07930	SM01144	O3Y_RS07930
O3Y_RS07940	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS08025	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS08030	SM00420	helix_turn_helix, Deoxyribose operon repressor
O3Y_RS08030	SM01134	O3Y_RS08030
O3Y_RS08050	SM00354	helix_turn _helix lactose operon repressor
O3Y_RS08070	SM00849	Metallo-beta-lactamase superfamily
O3Y_RS08095	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS08130	SM01022	O3Y_RS08130
O3Y_RS08170	SM00248	ankyrin repeats
O3Y_RS08175	SM01060	O3Y_RS08175
O3Y_RS08200	SM00822	O3Y_RS08200
O3Y_RS08205	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS08210	SM00267	diguanylate cyclase
O3Y_RS08250	SM00267	diguanylate cyclase
O3Y_RS08265	SM00260	Two component signalling adaptor domain
O3Y_RS08265	SM00448	cheY-homologous receiver domain
O3Y_RS08275	SM00448	cheY-homologous receiver domain
O3Y_RS08280	SM00387	Histidine kinase-like ATPases
O3Y_RS08320	SM00028	Tetratricopeptide repeats
O3Y_RS08320	SM00386	HAT (Half-A-TPR) repeats
O3Y_RS08410	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS08435	SM00363	S4 RNA-binding domain
O3Y_RS08440	SM00487	DEAD-like helicases superfamily
O3Y_RS08440	SM00490	helicase superfamily c-terminal domain
O3Y_RS08450	SM00448	cheY-homologous receiver domain
O3Y_RS08450	SM00862	Transcriptional regulatory protein, C terminal
O3Y_RS08455	SM00387	Histidine kinase-like ATPases
O3Y_RS08465	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS08480	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS08480	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS08505	SM00020	Trypsin-like serine protease
O3Y_RS08515	SM00448	cheY-homologous receiver domain
O3Y_RS08520	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS08520	SM00421	helix_turn_helix, Lux Regulon
O3Y_RS08520	SM00448	cheY-homologous receiver domain
O3Y_RS08525	SM00062	Bacterial periplasmic substrate-binding proteins
O3Y_RS08525	SM00073	Histidine Phosphotransfer domain
O3Y_RS08525	SM00387	Histidine kinase-like ATPases
O3Y_RS08525	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS08525	SM00448	cheY-homologous receiver domain
O3Y_RS08525	SM00918	Ligated ion channel L-glutamate- and glycine-binding site
O3Y_RS08530	SM00116	Domain in cystathionine beta-synthase and other proteins.
O3Y_RS08550	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS08585	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS08605	SM00155	Phospholipase D. Active site motifs.
O3Y_RS08650	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS08670	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS08675	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS08690	SM01131	O3Y_RS08690
O3Y_RS08800	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS08800	SM00091	PAS domain
O3Y_RS08805	SM00729	Elongator protein 3, MiaB family, Radical SAM
O3Y_RS08815	SM00344	helix_turn_helix ASNC type
O3Y_RS08845	SM00448	cheY-homologous receiver domain
O3Y_RS08845	SM00862	Transcriptional regulatory protein, C terminal
O3Y_RS08855	SM00354	helix_turn _helix lactose operon repressor
O3Y_RS08890	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
O3Y_RS08890	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
O3Y_RS08890	SM00493	O3Y_RS08890
O3Y_RS08920	SM00316	Ribosomal protein S1-like RNA-binding domain
O3Y_RS09025	SM00487	DEAD-like helicases superfamily
O3Y_RS09025	SM00490	helicase superfamily c-terminal domain
O3Y_RS09045	SM00487	DEAD-like helicases superfamily
O3Y_RS09100	SM01130	O3Y_RS09100
O3Y_RS09305	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS09340	SM00342	helix_turn_helix, arabinose operon control protein
O3Y_RS09360	SM00387	Histidine kinase-like ATPases
O3Y_RS09360	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS09360	SM00448	cheY-homologous receiver domain
O3Y_RS09430	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS09435	SM00278	Helix-hairpin-helix DNA-binding motif class 1
O3Y_RS09445	SM00840	O3Y_RS09445
O3Y_RS09460	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS09480	SM00491	O3Y_RS09480
O3Y_RS09500	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS09500	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS09520	SM00062	Bacterial periplasmic substrate-binding proteins
O3Y_RS09520	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
O3Y_RS09525	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS09545	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS09565	SM00763	PrkA AAA domain
O3Y_RS09595	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS09600	SM00849	Metallo-beta-lactamase superfamily
O3Y_RS09615	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS09630	SM00487	DEAD-like helicases superfamily
O3Y_RS09630	SM00490	helicase superfamily c-terminal domain
O3Y_RS09630	SM00982	O3Y_RS09630
O3Y_RS09630	SM01058	CarD-like/TRCF domain
O3Y_RS09685	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS09685	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS09695	SM00345	helix_turn_helix gluconate operon transcriptional repressor
O3Y_RS09710	SM00843	O3Y_RS09710
O3Y_RS09715	SM00344	helix_turn_helix ASNC type
O3Y_RS09720	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
O3Y_RS09720	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
O3Y_RS09745	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
O3Y_RS09750	SM00028	Tetratricopeptide repeats
O3Y_RS09760	SM00411	bacterial (prokaryotic) histone like domain
O3Y_RS09765	SM00316	Ribosomal protein S1-like RNA-binding domain
O3Y_RS09775	SM00278	Helix-hairpin-helix DNA-binding motif class 1
O3Y_RS09785	SM00411	bacterial (prokaryotic) histone like domain
O3Y_RS09790	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS09790	SM00464	Found in ATP-dependent protease La (LON)
O3Y_RS09795	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS09795	SM00994	ClpX C4-type zinc finger
O3Y_RS09795	SM01086	C-terminal, D2-small domain, of ClpB protein
O3Y_RS09815	SM00387	Histidine kinase-like ATPases
O3Y_RS09815	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS09820	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS09820	SM00448	cheY-homologous receiver domain
O3Y_RS09855	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS09855	SM00267	diguanylate cyclase
O3Y_RS09870	SM00563	Phosphate acyltransferases
O3Y_RS09935	SM00495	Chitin-binding domain type 3
O3Y_RS09935	SM00636	O3Y_RS09935
O3Y_RS09985	SM00978	O3Y_RS09985
O3Y_RS09995	SM00563	Phosphate acyltransferases
O3Y_RS10005	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS10005	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS10010	SM00530	Helix-turn-helix XRE-family like proteins 
O3Y_RS10025	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
O3Y_RS10055	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
O3Y_RS10060	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
O3Y_RS10065	SM01144	O3Y_RS10065
O3Y_RS10080	SM00474	3'-5' exonuclease
O3Y_RS10110	SM00487	DEAD-like helicases superfamily
O3Y_RS10110	SM00491	O3Y_RS10110
O3Y_RS10135	SM00870	O3Y_RS10135
O3Y_RS10155	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
O3Y_RS10185	SM00260	Two component signalling adaptor domain
O3Y_RS10185	SM00448	cheY-homologous receiver domain
O3Y_RS10250	SM00825	Beta-ketoacyl synthase
O3Y_RS10260	SM00822	O3Y_RS10260
O3Y_RS10265	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
O3Y_RS10295	SM00363	S4 RNA-binding domain
O3Y_RS10305	SM00316	Ribosomal protein S1-like RNA-binding domain
O3Y_RS10330	SM00859	Semialdehyde dehydrogenase, NAD binding domain
O3Y_RS10340	SM00073	Histidine Phosphotransfer domain
O3Y_RS10375	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
O3Y_RS10375	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
O3Y_RS10375	SM00493	O3Y_RS10375
O3Y_RS10445	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS10455	SM00260	Two component signalling adaptor domain
O3Y_RS10460	SM00260	Two component signalling adaptor domain
O3Y_RS10470	SM00448	cheY-homologous receiver domain
O3Y_RS10475	SM00073	Histidine Phosphotransfer domain
O3Y_RS10475	SM00260	Two component signalling adaptor domain
O3Y_RS10475	SM00387	Histidine kinase-like ATPases
O3Y_RS10475	SM01231	O3Y_RS10475
O3Y_RS10485	SM00448	cheY-homologous receiver domain
O3Y_RS10500	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS10500	SM00962	SRP54-type protein, GTPase domain
O3Y_RS10510	SM00855	Phosphoglycerate mutase family
O3Y_RS10525	SM00836	DALR anticodon binding domain
O3Y_RS10525	SM01016	Arginyl tRNA synthetase N terminal dom
O3Y_RS10545	SM00899	O3Y_RS10545
O3Y_RS10550	SM00342	helix_turn_helix, arabinose operon control protein
O3Y_RS10560	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS10570	SM00881	CoA binding domain
O3Y_RS10585	SM00861	Transketolase, pyrimidine binding domain
O3Y_RS10675	SM00859	Semialdehyde dehydrogenase, NAD binding domain
O3Y_RS10685	SM00825	Beta-ketoacyl synthase
O3Y_RS10730	SM00463	Small MutS-related domain
O3Y_RS10785	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS10810	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS10810	SM00448	cheY-homologous receiver domain
O3Y_RS10815	SM00091	PAS domain
O3Y_RS10815	SM00387	Histidine kinase-like ATPases
O3Y_RS10815	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS10820	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS10905	SM01130	O3Y_RS10905
O3Y_RS10920	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS10920	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS10935	SM00028	Tetratricopeptide repeats
O3Y_RS10995	SM00937	O3Y_RS10995
O3Y_RS11015	SM01400	O3Y_RS11015
O3Y_RS11135	SM00047	Lysozyme subfamily 2
O3Y_RS11180	SM00138	Methyltransferase, chemotaxis proteins 
O3Y_RS11185	SM00260	Two component signalling adaptor domain
O3Y_RS11185	SM00448	cheY-homologous receiver domain
O3Y_RS11190	SM00858	O3Y_RS11190
O3Y_RS11220	SM00823	Phosphopantetheine attachment site
O3Y_RS11260	SM01081	Putative carbohydrate binding domain
O3Y_RS11280	SM00463	Small MutS-related domain
O3Y_RS11285	SM00363	S4 RNA-binding domain
O3Y_RS11290	SM00267	diguanylate cyclase
O3Y_RS11330	SM00479	O3Y_RS11330
O3Y_RS11345	SM00849	Metallo-beta-lactamase superfamily
O3Y_RS11350	SM00257	Lysin motif
O3Y_RS11360	SM00938	Nitrogen regulatory protein P-II
O3Y_RS11375	SM00977	TilS substrate C-terminal domain
O3Y_RS11385	SM00481	DNA polymerase alpha chain like domain
O3Y_RS11415	SM00935	Outer membrane protein (OmpH-like)
O3Y_RS11425	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
O3Y_RS11470	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
O3Y_RS11525	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
O3Y_RS11575	SM00267	diguanylate cyclase
O3Y_RS11615	SM00900	O3Y_RS11615
O3Y_RS11665	SM00464	Found in ATP-dependent protease La (LON)
O3Y_RS11700	SM00925	MltA specific insert domain
O3Y_RS11790	SM00354	helix_turn _helix lactose operon repressor
O3Y_RS11795	SM01038	Beta galactosidase small chain
O3Y_RS11815	SM00838	Elongation factor G C-terminus
O3Y_RS11815	SM00889	Elongation factor G, domain IV
O3Y_RS11820	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS11850	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
O3Y_RS11855	SM01133	O3Y_RS11855
O3Y_RS11895	SM00986	Uracil DNA glycosylase superfamily
O3Y_RS11895	SM00987	UreE urease accessory protein, C-terminal domain 
O3Y_RS11900	SM00518	AP endonuclease family 2
O3Y_RS11940	SM00448	cheY-homologous receiver domain
O3Y_RS11940	SM00862	Transcriptional regulatory protein, C terminal
O3Y_RS11945	SM00073	Histidine Phosphotransfer domain
O3Y_RS11945	SM00091	PAS domain
O3Y_RS11945	SM00387	Histidine kinase-like ATPases
O3Y_RS11945	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS11945	SM00448	cheY-homologous receiver domain
O3Y_RS11950	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
O3Y_RS11950	SM00091	PAS domain
O3Y_RS11950	SM00267	diguanylate cyclase
O3Y_RS11955	SM00729	Elongator protein 3, MiaB family, Radical SAM
O3Y_RS12020	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS12025	SM00507	HNH nucleases
O3Y_RS12040	SM00851	MGS-like domain
O3Y_RS12040	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
O3Y_RS12045	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
O3Y_RS12070	SM00957	SecA DEAD-like domain
O3Y_RS12070	SM00958	SecA preprotein cross-linking domain
O3Y_RS12085	SM00864	Tubulin/FtsZ family, GTPase domain
O3Y_RS12085	SM00865	Tubulin/FtsZ family, C-terminal domain
O3Y_RS12090	SM00842	Cell division protein FtsA
O3Y_RS12165	SM00345	helix_turn_helix gluconate operon transcriptional repressor
O3Y_RS12165	SM00895	O3Y_RS12165
O3Y_RS12195	SM00644	O3Y_RS12195
O3Y_RS12240	SM00434	DNA Topoisomerase IV
O3Y_RS12245	SM00387	Histidine kinase-like ATPases
O3Y_RS12245	SM00433	TopoisomeraseII
O3Y_RS12285	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
O3Y_RS12285	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS12290	SM00880	O3Y_RS12290
O3Y_RS12290	SM01118	O3Y_RS12290
O3Y_RS12305	SM00287	Bacterial SH3 domain homologues
O3Y_RS12315	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS12325	SM01192	O3Y_RS12325
O3Y_RS12325	SM01193	O3Y_RS12325
O3Y_RS12340	SM00954	Region found in RelA / SpoT proteins
O3Y_RS12350	SM00073	Histidine Phosphotransfer domain
O3Y_RS12350	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS12350	SM00387	Histidine kinase-like ATPases
O3Y_RS12350	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS12350	SM00448	cheY-homologous receiver domain
O3Y_RS12355	SM00267	diguanylate cyclase
O3Y_RS12390	SM00358	Double-stranded RNA binding motif
O3Y_RS12390	SM00535	Ribonuclease III family
O3Y_RS12515	SM00014	Acid phosphatase homologues
O3Y_RS12525	SM00917	LeuA allosteric (dimerisation) domain
O3Y_RS12530	SM01329	O3Y_RS12530
O3Y_RS12585	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
O3Y_RS12635	SM00487	DEAD-like helicases superfamily
O3Y_RS12635	SM00490	helicase superfamily c-terminal domain
O3Y_RS12645	SM00670	Large family of predicted nucleotide-binding domains
O3Y_RS12675	SM00563	Phosphate acyltransferases
O3Y_RS12710	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS12725	SM00116	Domain in cystathionine beta-synthase and other proteins.
O3Y_RS12745	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS12775	SM00924	MgtE intracellular N domain
O3Y_RS12790	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS12865	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS12915	SM00487	DEAD-like helicases superfamily
O3Y_RS12915	SM00490	helicase superfamily c-terminal domain
O3Y_RS12950	SM00662	RNA polymerases D
O3Y_RS12955	SM00363	S4 RNA-binding domain
O3Y_RS12955	SM01390	O3Y_RS12955
O3Y_RS13020	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
O3Y_RS13025	SM01374	O3Y_RS13025
O3Y_RS13045	SM00322	K homology RNA-binding domain
O3Y_RS13060	SM01382	O3Y_RS13060
O3Y_RS13060	SM01383	O3Y_RS13060
O3Y_RS13080	SM01403	O3Y_RS13080
O3Y_RS13085	SM00967	RNA 2'-O ribose methyltransferase substrate binding
O3Y_RS13090	SM00316	Ribosomal protein S1-like RNA-binding domain
O3Y_RS13090	SM00357	Cold shock protein domain
O3Y_RS13090	SM00955	O3Y_RS13090
O3Y_RS13100	SM00671	Sel1-like repeats.
O3Y_RS13105	SM00788	Adenylosuccinate synthetase
O3Y_RS13135	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS13160	SM00100	Cyclic nucleotide-monophosphate binding domain
O3Y_RS13160	SM00419	helix_turn_helix, cAMP Regulatory protein
O3Y_RS13165	SM01150	O3Y_RS13165
O3Y_RS13190	SM00729	Elongator protein 3, MiaB family, Radical SAM
O3Y_RS13240	SM00965	Secretin and TonB N terminus short domain
O3Y_RS13305	SM00859	Semialdehyde dehydrogenase, NAD binding domain
O3Y_RS13325	SM00971	Serine acetyltransferase, N-terminal
O3Y_RS13340	SM00450	Rhodanese Homology Domain
O3Y_RS13370	SM00841	Elongation factor P, C-terminal
O3Y_RS13370	SM01185	O3Y_RS13370
O3Y_RS13390	SM00883	Chaperonin 10 Kd subunit
O3Y_RS13435	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS13435	SM01086	C-terminal, D2-small domain, of ClpB protein
O3Y_RS13450	SM00354	helix_turn _helix lactose operon repressor
O3Y_RS13455	SM00487	DEAD-like helicases superfamily
O3Y_RS13455	SM00490	helicase superfamily c-terminal domain
O3Y_RS13465	SM00919	Malic enzyme, NAD binding domain
O3Y_RS13465	SM01274	O3Y_RS13465
O3Y_RS13515	SM00448	cheY-homologous receiver domain
O3Y_RS13515	SM00862	Transcriptional regulatory protein, C terminal
O3Y_RS13520	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS13520	SM00387	Histidine kinase-like ATPases
O3Y_RS13520	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS13540	SM00267	diguanylate cyclase
O3Y_RS13570	SM00421	helix_turn_helix, Lux Regulon
O3Y_RS13570	SM00448	cheY-homologous receiver domain
O3Y_RS13575	SM01091	Transporter associated domain
O3Y_RS13595	SM00072	Guanylate kinase homologues.
O3Y_RS13600	SM01409	O3Y_RS13600
O3Y_RS13605	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
O3Y_RS13605	SM00954	Region found in RelA / SpoT proteins
O3Y_RS13610	SM00487	DEAD-like helicases superfamily
O3Y_RS13610	SM00490	helicase superfamily c-terminal domain
O3Y_RS13620	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
O3Y_RS13620	SM00387	Histidine kinase-like ATPases
O3Y_RS13620	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS13625	SM00448	cheY-homologous receiver domain
O3Y_RS13625	SM00862	Transcriptional regulatory protein, C terminal
O3Y_RS13635	SM00316	Ribosomal protein S1-like RNA-binding domain
O3Y_RS13635	SM00732	Likely ribonuclease with RNase H fold.
O3Y_RS13715	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS13730	SM00363	S4 RNA-binding domain
O3Y_RS13780	SM01230	O3Y_RS13780
O3Y_RS13790	SM00091	PAS domain
O3Y_RS13790	SM00387	Histidine kinase-like ATPases
O3Y_RS13790	SM00388	His Kinase A (phosphoacceptor) domain
O3Y_RS13795	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS13795	SM00448	cheY-homologous receiver domain
O3Y_RS13800	SM00052	Putative diguanylate phosphodiesterase
O3Y_RS13800	SM00267	diguanylate cyclase
O3Y_RS13930	SM00382	ATPases associated with a variety of cellular activities
O3Y_RS13970	SM00470	ParB-like nuclease domain
O3Y_RS13985	SM01228	O3Y_RS13985
O3Y_RS14405	SM01004	Delta-aminolevulinic acid dehydratase
O3Y_RS14420	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
O3Y_RS14420	SM00475	5'-3' exonuclease
O3Y_RS14510	SM01204	O3Y_RS14510
O3Y_RS14835	SM00490	helicase superfamily c-terminal domain
O3Y_RS14835	SM00956	O3Y_RS14835
O3Y_RS15550	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
O3Y_RS15620	SM00663	RNA polymerase I subunit A N-terminus
O3Y_RS15770	SM00646	O3Y_RS15770
O3Y_RS16860	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
O3Y_RS16860	SM00534	ATPase domain of DNA mismatch repair MUTS family
O3Y_RS18485	SM00271	DnaJ molecular chaperone homology domain
O3Y_RS19145	SM00112	Cadherin repeats.
