locus-tag class description VCLMA_RS00010 PF00258 Flavodoxin VCLMA_RS00015 PF10396 GTP-binding protein TrmE N-terminus VCLMA_RS00015 PF12631 MnmE helical domain VCLMA_RS00015 PF01926 50S ribosome-binding GTPase VCLMA_RS00020 PF02096 60Kd inner membrane protein VCLMA_RS00020 PF14849 YidC periplasmic domain VCLMA_RS00025 PF01809 Putative membrane protein insertion efficiency factor VCLMA_RS00030 PF00825 Ribonuclease P VCLMA_RS00035 PF00468 Ribosomal protein L34 VCLMA_RS00040 PF00005 ABC transporter VCLMA_RS00045 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS00050 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCLMA_RS00055 PF00308 Bacterial dnaA protein VCLMA_RS00055 PF08299 Bacterial dnaA protein helix-turn-helix VCLMA_RS00055 PF11638 DnaA N-terminal domain VCLMA_RS00060 PF02768 DNA polymerase III beta subunit, C-terminal domain VCLMA_RS00060 PF02767 DNA polymerase III beta subunit, central domain VCLMA_RS00060 PF00712 DNA polymerase III beta subunit, N-terminal domain VCLMA_RS00065 PF02463 RecF/RecN/SMC N terminal domain VCLMA_RS00085 PF00011 Hsp20/alpha crystallin family VCLMA_RS00090 PF00155 Aminotransferase class I and II VCLMA_RS00095 PF05746 DALR anticodon binding domain VCLMA_RS00095 PF02092 Glycyl-tRNA synthetase beta subunit VCLMA_RS00100 PF02091 Glycyl-tRNA synthetase alpha subunit VCLMA_RS00105 PF01169 Uncharacterized protein family UPF0016 VCLMA_RS00115 PF01206 Sulfurtransferase TusA VCLMA_RS00125 PF00107 Zinc-binding dehydrogenase VCLMA_RS00125 PF08240 Alcohol dehydrogenase GroES-like domain VCLMA_RS00130 PF00585 C-terminal regulatory domain of Threonine dehydratase VCLMA_RS00130 PF00291 Pyridoxal-phosphate dependent enzyme VCLMA_RS00135 PF00920 Dehydratase family VCLMA_RS00140 PF01063 Amino-transferase class IV VCLMA_RS00150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCLMA_RS00150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCLMA_RS00150 PF00205 Thiamine pyrophosphate enzyme, central domain VCLMA_RS00160 PF01553 Acyltransferase VCLMA_RS00165 PF01323 DSBA-like thioredoxin domain VCLMA_RS00170 PF01636 Phosphotransferase enzyme family VCLMA_RS00175 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VCLMA_RS00175 PF13746 4Fe-4S dicluster domain VCLMA_RS00175 PF12801 4Fe-4S binding domain VCLMA_RS00180 PF06288 Protein of unknown function (DUF1040) VCLMA_RS00190 PF07070 SpoOM protein VCLMA_RS00195 PF03006 Haemolysin-III related VCLMA_RS00205 PF02386 Cation transport protein VCLMA_RS00210 PF02254 TrkA-N domain VCLMA_RS00210 PF02080 TrkA-C domain VCLMA_RS00215 PF01029 NusB family VCLMA_RS00215 PF01189 16S rRNA methyltransferase RsmB/F VCLMA_RS00220 PF02911 Formyl transferase, C-terminal domain VCLMA_RS00220 PF00551 Formyl transferase VCLMA_RS00225 PF01327 Polypeptide deformylase VCLMA_RS00230 PF01476 LysM domain VCLMA_RS00235 PF02481 DNA recombination-mediator protein A VCLMA_RS00235 PF17782 DprA winged helix domain VCLMA_RS00240 PF04361 Protein of unknown function (DUF494) VCLMA_RS00245 PF01396 Topoisomerase DNA binding C4 zinc finger VCLMA_RS00250 PF02222 ATP-grasp domain VCLMA_RS00250 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VCLMA_RS00255 PF00731 AIR carboxylase VCLMA_RS00260 PF01300 Telomere recombination VCLMA_RS00265 PF01218 Coproporphyrinogen III oxidase VCLMA_RS00270 PF08501 Shikimate dehydrogenase substrate binding domain VCLMA_RS00270 PF01488 Shikimate / quinate 5-dehydrogenase VCLMA_RS00270 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VCLMA_RS00280 PF00132 Bacterial transferase hexapeptide (six repeats) VCLMA_RS00315 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VCLMA_RS00320 PF01964 Radical SAM ThiC family VCLMA_RS00320 PF13667 ThiC-associated domain VCLMA_RS00325 PF02581 Thiamine monophosphate synthase VCLMA_RS00330 PF00899 ThiF family VCLMA_RS00335 PF02597 ThiS family VCLMA_RS00340 PF05690 Thiazole biosynthesis protein ThiG VCLMA_RS00345 PF06968 Biotin and Thiamin Synthesis associated domain VCLMA_RS00345 PF04055 Radical SAM superfamily VCLMA_RS00350 PF00557 Metallopeptidase family M24 VCLMA_RS00350 PF00557 Metallopeptidase family M24 VCLMA_RS00350 PF01321 Creatinase/Prolidase N-terminal domain VCLMA_RS00350 PF01321 Creatinase/Prolidase N-terminal domain VCLMA_RS00360 PF07690 Major Facilitator Superfamily VCLMA_RS00370 PF01037 Lrp/AsnC ligand binding domain VCLMA_RS00375 PF08448 PAS fold VCLMA_RS00375 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS00375 PF00563 EAL domain VCLMA_RS00380 PF04445 Putative SAM-dependent methyltransferase VCLMA_RS00390 PF00892 EamA-like transporter family VCLMA_RS00395 PF00582 Universal stress protein family VCLMA_RS00405 PF00210 Ferritin-like domain VCLMA_RS00410 PF10625 Universal stress protein B (UspB) VCLMA_RS00425 PF02646 RmuC family VCLMA_RS00430 PF01209 ubiE/COQ5 methyltransferase family VCLMA_RS00435 PF02036 SCP-2 sterol transfer family VCLMA_RS00440 PF03109 ABC1 family VCLMA_RS00445 PF02416 mttA/Hcf106 family VCLMA_RS00450 PF02416 mttA/Hcf106 family VCLMA_RS00455 PF00902 Sec-independent protein translocase protein (TatC) VCLMA_RS00460 PF03150 Di-haem cytochrome c peroxidase VCLMA_RS00460 PF00034 Cytochrome c VCLMA_RS00465 PF01554 MatE VCLMA_RS00475 PF01726 LexA DNA binding domain VCLMA_RS00475 PF00717 Peptidase S24-like VCLMA_RS00480 PF01553 Acyltransferase VCLMA_RS00485 PF01040 UbiA prenyltransferase family VCLMA_RS00490 PF04345 Chorismate lyase VCLMA_RS00500 PF03748 Flagellar basal body-associated protein FliL VCLMA_RS00505 PF00672 HAMP domain VCLMA_RS00505 PF02203 Tar ligand binding domain homologue VCLMA_RS00505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS00510 PF01694 Rhomboid family VCLMA_RS00510 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VCLMA_RS00515 PF00581 Rhodanese-like domain VCLMA_RS00525 PF01026 TatD related DNase VCLMA_RS00530 PF00490 Delta-aminolevulinic acid dehydratase VCLMA_RS00545 PF01367 5'-3' exonuclease, C-terminal SAM fold VCLMA_RS00545 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VCLMA_RS00545 PF00476 DNA polymerase family A VCLMA_RS00545 PF01612 3'-5' exonuclease VCLMA_RS00555 PF00034 Cytochrome c VCLMA_RS00565 PF04220 Der GTPase activator (YihI) VCLMA_RS00570 PF10675 Protein of unknown function (DUF2489) VCLMA_RS00575 PF04055 Radical SAM superfamily VCLMA_RS00575 PF06969 HemN C-terminal domain VCLMA_RS00580 PF07219 HemY protein N-terminus VCLMA_RS00585 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VCLMA_RS00590 PF02602 Uroporphyrinogen-III synthase HemD VCLMA_RS00595 PF03900 Porphobilinogen deaminase, C-terminal domain VCLMA_RS00595 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VCLMA_RS00605 PF01295 Adenylate cyclase, class-I VCLMA_RS00605 PF12633 Adenylate cyclase NT domain VCLMA_RS00610 PF01491 Frataxin-like domain VCLMA_RS00620 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VCLMA_RS00620 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VCLMA_RS00625 PF01678 Diaminopimelate epimerase VCLMA_RS00630 PF04340 Protein of unknown function, DUF484 VCLMA_RS00635 PF00589 Phage integrase family VCLMA_RS00635 PF02899 Phage integrase, N-terminal SAM-like domain VCLMA_RS00640 PF13419 Haloacid dehalogenase-like hydrolase VCLMA_RS00645 PF10442 FIST C domain VCLMA_RS00645 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS00645 PF00563 EAL domain VCLMA_RS00645 PF08495 FIST N domain VCLMA_RS00670 PF12146 Serine aminopeptidase, S33 VCLMA_RS00675 PF01810 LysE type translocator VCLMA_RS00680 PF08668 HDOD domain VCLMA_RS00680 PF00563 EAL domain VCLMA_RS00685 PF00210 Ferritin-like domain VCLMA_RS00725 PF02881 SRP54-type protein, helical bundle domain VCLMA_RS00725 PF00448 SRP54-type protein, GTPase domain VCLMA_RS00730 PF00005 ABC transporter VCLMA_RS00735 PF18075 FtsX extracellular domain VCLMA_RS00740 PF00140 Sigma-70 factor, region 1.2 VCLMA_RS00740 PF04545 Sigma-70, region 4 VCLMA_RS00740 PF04542 Sigma-70 region 2 VCLMA_RS00745 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCLMA_RS00745 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCLMA_RS00750 PF00440 Bacterial regulatory proteins, tetR family VCLMA_RS00760 PF05958 tRNA (Uracil-5-)-methyltransferase VCLMA_RS00765 PF00082 Subtilase family VCLMA_RS00765 PF04151 Bacterial pre-peptidase C-terminal domain VCLMA_RS00765 PF05922 Peptidase inhibitor I9 VCLMA_RS00770 PF01177 Asp/Glu/Hydantoin racemase VCLMA_RS00805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS00805 PF03466 LysR substrate binding domain VCLMA_RS00810 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VCLMA_RS00810 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VCLMA_RS00815 PF04380 Membrane fusogenic activity VCLMA_RS00820 PF00873 AcrB/AcrD/AcrF family VCLMA_RS00825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCLMA_RS00830 PF00440 Bacterial regulatory proteins, tetR family VCLMA_RS00840 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VCLMA_RS00875 PF00005 ABC transporter VCLMA_RS00875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCLMA_RS00880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCLMA_RS00885 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS00890 PF12911 N-terminal TM domain of oligopeptide transport permease C VCLMA_RS00890 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS00900 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCLMA_RS00900 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCLMA_RS00905 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VCLMA_RS00910 PF01432 Peptidase family M3 VCLMA_RS00915 PF13361 UvrD-like helicase C-terminal domain VCLMA_RS00915 PF00580 UvrD/REP helicase N-terminal domain VCLMA_RS00920 PF01810 LysE type translocator VCLMA_RS00925 PF12833 Helix-turn-helix domain VCLMA_RS00935 PF00892 EamA-like transporter family VCLMA_RS00940 PF00570 HRDC domain VCLMA_RS00940 PF16124 RecQ zinc-binding VCLMA_RS00940 PF00271 Helicase conserved C-terminal domain VCLMA_RS00940 PF00270 DEAD/DEAH box helicase VCLMA_RS00940 PF09382 RQC domain VCLMA_RS00960 PF07715 TonB-dependent Receptor Plug Domain VCLMA_RS00960 PF00593 TonB dependent receptor VCLMA_RS00965 PF00005 ABC transporter VCLMA_RS00970 PF01497 Periplasmic binding protein VCLMA_RS00975 PF01032 FecCD transport family VCLMA_RS00980 PF01380 SIS domain VCLMA_RS00980 PF01418 Helix-turn-helix domain, rpiR family VCLMA_RS00990 PF13580 SIS domain VCLMA_RS00995 PF00367 phosphotransferase system, EIIB VCLMA_RS00995 PF02378 Phosphotransferase system, EIIC VCLMA_RS01000 PF03350 Uncharacterized protein family, UPF0114 VCLMA_RS01005 PF08340 Domain of unknown function (DUF1732) VCLMA_RS01005 PF03755 YicC-like family, N-terminal region VCLMA_RS01010 PF03725 3' exoribonuclease family, domain 2 VCLMA_RS01010 PF01138 3' exoribonuclease family, domain 1 VCLMA_RS01015 PF00156 Phosphoribosyl transferase domain VCLMA_RS01020 PF03279 Bacterial lipid A biosynthesis acyltransferase VCLMA_RS01030 PF00440 Bacterial regulatory proteins, tetR family VCLMA_RS01035 PF02441 Flavoprotein VCLMA_RS01035 PF04127 DNA / pantothenate metabolism flavoprotein VCLMA_RS01040 PF00672 HAMP domain VCLMA_RS01040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS01040 PF17200 Single Cache domain 2 VCLMA_RS01045 PF04002 RadC-like JAB domain VCLMA_RS01050 PF00830 Ribosomal L28 family VCLMA_RS01055 PF00471 Ribosomal protein L33 VCLMA_RS01065 PF06827 Zinc finger found in FPG and IleRS VCLMA_RS01065 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VCLMA_RS01065 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VCLMA_RS01070 PF01467 Cytidylyltransferase-like VCLMA_RS01075 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCLMA_RS01080 PF00535 Glycosyl transferase family 2 VCLMA_RS01085 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCLMA_RS01120 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VCLMA_RS01125 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VCLMA_RS01135 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCLMA_RS01150 PF01522 Polysaccharide deacetylase VCLMA_RS01150 PF00457 Glycosyl hydrolases family 11 VCLMA_RS01155 PF01370 NAD dependent epimerase/dehydratase family VCLMA_RS01160 PF00483 Nucleotidyl transferase VCLMA_RS01160 PF01050 Mannose-6-phosphate isomerase VCLMA_RS01165 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCLMA_RS01165 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCLMA_RS01165 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCLMA_RS01165 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCLMA_RS01170 PF16363 GDP-mannose 4,6 dehydratase VCLMA_RS01175 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VCLMA_RS01190 PF00005 ABC transporter VCLMA_RS01190 PF14524 Wzt C-terminal domain VCLMA_RS01200 PF13193 AMP-binding enzyme C-terminal domain VCLMA_RS01200 PF00501 AMP-binding enzyme VCLMA_RS01205 PF00465 Iron-containing alcohol dehydrogenase VCLMA_RS01205 PF00171 Aldehyde dehydrogenase family VCLMA_RS01215 PF00132 Bacterial transferase hexapeptide (six repeats) VCLMA_RS01220 PF13808 DDE_Tnp_1-associated VCLMA_RS01220 PF01609 Transposase DDE domain VCLMA_RS01235 PF01527 Transposase VCLMA_RS01240 PF00665 Integrase core domain VCLMA_RS01255 PF02719 Polysaccharide biosynthesis protein VCLMA_RS01260 PF01370 NAD dependent epimerase/dehydratase family VCLMA_RS01265 PF02397 Bacterial sugar transferase VCLMA_RS01270 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VCLMA_RS01270 PF10996 Beta-Casp domain VCLMA_RS01270 PF00753 Metallo-beta-lactamase superfamily VCLMA_RS01275 PF00924 Mechanosensitive ion channel VCLMA_RS01280 PF03167 Uracil DNA glycosylase superfamily VCLMA_RS01285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCLMA_RS01290 PF04222 Protein of unknown function (DUF416) VCLMA_RS01295 PF01238 Phosphomannose isomerase type I VCLMA_RS01300 PF00480 ROK family VCLMA_RS01305 PF01595 Cyclin M transmembrane N-terminal domain VCLMA_RS01305 PF00571 CBS domain VCLMA_RS01315 PF00216 Bacterial DNA-binding protein VCLMA_RS01325 PF02844 Phosphoribosylglycinamide synthetase, N domain VCLMA_RS01325 PF02843 Phosphoribosylglycinamide synthetase, C domain VCLMA_RS01325 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VCLMA_RS01330 PF02142 MGS-like domain VCLMA_RS01330 PF01808 AICARFT/IMPCHase bienzyme VCLMA_RS01335 PF13411 MerR HTH family regulatory protein VCLMA_RS01340 PF18500 CadC C-terminal domain 1 VCLMA_RS01340 PF00486 Transcriptional regulatory protein, C terminal VCLMA_RS01345 PF13520 Amino acid permease VCLMA_RS01350 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VCLMA_RS01350 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VCLMA_RS01350 PF01276 Orn/Lys/Arg decarboxylase, major domain VCLMA_RS01355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS01355 PF17200 Single Cache domain 2 VCLMA_RS01355 PF00672 HAMP domain VCLMA_RS01365 PF00593 TonB dependent receptor VCLMA_RS01365 PF07715 TonB-dependent Receptor Plug Domain VCLMA_RS01370 PF01081 KDPG and KHG aldolase VCLMA_RS01375 PF02447 GntP family permease VCLMA_RS01380 PF01202 Shikimate kinase VCLMA_RS01385 PF00920 Dehydratase family VCLMA_RS01390 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VCLMA_RS01390 PF00356 Bacterial regulatory proteins, lacI family VCLMA_RS01395 PF02954 Bacterial regulatory protein, Fis family VCLMA_RS01400 PF01207 Dihydrouridine synthase (Dus) VCLMA_RS01410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCLMA_RS01410 PF00289 Biotin carboxylase, N-terminal domain VCLMA_RS01410 PF02785 Biotin carboxylase C-terminal domain VCLMA_RS01415 PF00364 Biotin-requiring enzyme VCLMA_RS01420 PF01220 Dehydroquinase class II VCLMA_RS01425 PF16177 Acetyl-coenzyme A synthetase N-terminus VCLMA_RS01425 PF13193 AMP-binding enzyme C-terminal domain VCLMA_RS01425 PF00501 AMP-binding enzyme VCLMA_RS01445 PF12832 MFS_1 like family VCLMA_RS01450 PF00072 Response regulator receiver domain VCLMA_RS01450 PF09456 RcsC Alpha-Beta-Loop (ABL) VCLMA_RS01450 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS01450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS01455 PF02541 Ppx/GppA phosphatase family VCLMA_RS01460 PF00270 DEAD/DEAH box helicase VCLMA_RS01460 PF00271 Helicase conserved C-terminal domain VCLMA_RS01465 PF00085 Thioredoxin VCLMA_RS01470 PF07497 Rho termination factor, RNA-binding domain VCLMA_RS01470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCLMA_RS01470 PF07498 Rho termination factor, N-terminal domain VCLMA_RS01480 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VCLMA_RS01485 PF00175 Oxidoreductase NAD-binding domain VCLMA_RS01485 PF00111 2Fe-2S iron-sulfur cluster binding domain VCLMA_RS01485 PF00970 Oxidoreductase FAD-binding domain VCLMA_RS01490 PF00175 Oxidoreductase NAD-binding domain VCLMA_RS01525 PF13091 PLD-like domain VCLMA_RS01540 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VCLMA_RS01540 PF01565 FAD binding domain VCLMA_RS01545 PF08279 HTH domain VCLMA_RS01545 PF03099 Biotin/lipoate A/B protein ligase family VCLMA_RS01545 PF02237 Biotin protein ligase C terminal domain VCLMA_RS01550 PF00485 Phosphoribulokinase / Uridine kinase family VCLMA_RS01575 PF00009 Elongation factor Tu GTP binding domain VCLMA_RS01575 PF03143 Elongation factor Tu C-terminal domain VCLMA_RS01575 PF03144 Elongation factor Tu domain 2 VCLMA_RS01580 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VCLMA_RS01585 PF00467 KOW motif VCLMA_RS01585 PF02357 Transcription termination factor nusG VCLMA_RS01590 PF03946 Ribosomal protein L11, N-terminal domain VCLMA_RS01590 PF00298 Ribosomal protein L11, RNA binding domain VCLMA_RS01595 PF00687 Ribosomal protein L1p/L10e family VCLMA_RS01600 PF00466 Ribosomal protein L10 VCLMA_RS01620 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VCLMA_RS01625 PF09297 NADH pyrophosphatase zinc ribbon domain VCLMA_RS01625 PF00293 NUDIX domain VCLMA_RS01630 PF01208 Uroporphyrinogen decarboxylase (URO-D) VCLMA_RS01635 PF00440 Bacterial regulatory proteins, tetR family VCLMA_RS01635 PF08360 QacR-like protein, C-terminal region VCLMA_RS01645 PF01551 Peptidase family M23 VCLMA_RS01650 PF01676 Metalloenzyme superfamily VCLMA_RS01650 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VCLMA_RS01660 PF00939 Sodium:sulfate symporter transmembrane region VCLMA_RS01665 PF02666 Phosphatidylserine decarboxylase VCLMA_RS01670 PF03193 RsgA GTPase VCLMA_RS01715 PF08331 Domain of unknown function (DUF1730) VCLMA_RS01720 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VCLMA_RS01725 PF01520 N-acetylmuramoyl-L-alanine amidase VCLMA_RS01740 PF17209 Hfq protein VCLMA_RS01745 PF01926 50S ribosome-binding GTPase VCLMA_RS01745 PF13167 GTP-binding GTPase N-terminal VCLMA_RS01745 PF16360 GTP-binding GTPase Middle Region VCLMA_RS01755 PF01145 SPFH domain / Band 7 family VCLMA_RS01760 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VCLMA_RS01765 PF04102 SlyX VCLMA_RS01780 PF13309 HTH domain VCLMA_RS01780 PF08348 YheO-like PAS domain VCLMA_RS01790 PF02635 DsrE/DsrF-like family VCLMA_RS01800 PF00164 Ribosomal protein S12/S23 VCLMA_RS01805 PF00177 Ribosomal protein S7p/S5e VCLMA_RS01810 PF00679 Elongation factor G C-terminus VCLMA_RS01810 PF00009 Elongation factor Tu GTP binding domain VCLMA_RS01810 PF03764 Elongation factor G, domain IV VCLMA_RS01810 PF14492 Elongation Factor G, domain II VCLMA_RS01810 PF03144 Elongation factor Tu domain 2 VCLMA_RS01820 PF04324 BFD-like [2Fe-2S] binding domain VCLMA_RS01825 PF00210 Ferritin-like domain VCLMA_RS01835 PF00436 Single-strand binding protein family VCLMA_RS01840 PF01084 Ribosomal protein S18 VCLMA_RS01845 PF01281 Ribosomal protein L9, N-terminal domain VCLMA_RS01845 PF03948 Ribosomal protein L9, C-terminal domain VCLMA_RS01855 PF00772 DnaB-like helicase N terminal domain VCLMA_RS01855 PF03796 DnaB-like helicase C terminal domain VCLMA_RS01860 PF00842 Alanine racemase, C-terminal domain VCLMA_RS01860 PF01168 Alanine racemase, N-terminal domain VCLMA_RS01865 PF01894 Uncharacterised protein family UPF0047 VCLMA_RS01870 PF01894 Uncharacterised protein family UPF0047 VCLMA_RS01875 PF00342 Phosphoglucose isomerase VCLMA_RS01880 PF12706 Beta-lactamase superfamily domain VCLMA_RS01890 PF01475 Ferric uptake regulator family VCLMA_RS01895 PF01207 Dihydrouridine synthase (Dus) VCLMA_RS01900 PF09583 Phage shock protein G (Phageshock_PspG) VCLMA_RS01920 PF00667 FAD binding domain VCLMA_RS01920 PF00175 Oxidoreductase NAD-binding domain VCLMA_RS01920 PF00258 Flavodoxin VCLMA_RS01925 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VCLMA_RS01925 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VCLMA_RS01930 PF01507 Phosphoadenosine phosphosulfate reductase family VCLMA_RS01965 PF00999 Sodium/hydrogen exchanger family VCLMA_RS01970 PF00809 Pterin binding enzyme VCLMA_RS01970 PF02574 Homocysteine S-methyltransferase VCLMA_RS01970 PF02965 Vitamin B12 dependent methionine synthase, activation domain VCLMA_RS01970 PF02310 B12 binding domain VCLMA_RS01970 PF02607 B12 binding domain VCLMA_RS01975 PF01842 ACT domain VCLMA_RS01975 PF00696 Amino acid kinase family VCLMA_RS01980 PF00266 Aminotransferase class-V VCLMA_RS01990 PF17760 UvrA interaction domain VCLMA_RS01990 PF00005 ABC transporter VCLMA_RS01990 PF17755 UvrA DNA-binding domain VCLMA_RS01995 PF00483 Nucleotidyl transferase VCLMA_RS02000 PF00196 Bacterial regulatory proteins, luxR family VCLMA_RS02005 PF00436 Single-strand binding protein family VCLMA_RS02030 PF00263 Bacterial type II and III secretion system protein VCLMA_RS02030 PF11741 AMIN domain VCLMA_RS02030 PF07660 Secretin and TonB N terminus short domain VCLMA_RS02030 PF03958 Bacterial type II/III secretion system short domain VCLMA_RS02035 PF13401 AAA domain VCLMA_RS02035 PF01471 Putative peptidoglycan binding domain VCLMA_RS02045 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VCLMA_RS02045 PF00437 Type II/IV secretion system protein VCLMA_RS02050 PF00482 Type II secretion system (T2SS), protein F VCLMA_RS02060 PF07963 Prokaryotic N-terminal methylation motif VCLMA_RS02065 PF07963 Prokaryotic N-terminal methylation motif VCLMA_RS02100 PF04085 rod shape-determining protein MreC VCLMA_RS02105 PF04093 rod shape-determining protein MreD VCLMA_RS02110 PF02545 Maf-like protein VCLMA_RS02115 PF00575 S1 RNA binding domain VCLMA_RS02115 PF10150 Ribonuclease E/G family VCLMA_RS02120 PF13116 Protein of unknown function VCLMA_RS02120 PF13502 AsmA-like C-terminal region VCLMA_RS02125 PF00795 Carbon-nitrogen hydrolase VCLMA_RS02140 PF06877 Regulator of ribonuclease activity B VCLMA_RS02155 PF00582 Universal stress protein family VCLMA_RS02165 PF16868 NMT1-like family VCLMA_RS02170 PF02863 Arginine repressor, C-terminal domain VCLMA_RS02170 PF01316 Arginine repressor, DNA binding domain VCLMA_RS02175 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VCLMA_RS02175 PF00056 lactate/malate dehydrogenase, NAD binding domain VCLMA_RS02180 PF13520 Amino acid permease VCLMA_RS02185 PF00348 Polyprenyl synthetase VCLMA_RS02190 PF00829 Ribosomal prokaryotic L21 protein VCLMA_RS02195 PF01016 Ribosomal L27 protein VCLMA_RS02200 PF01018 GTP1/OBG VCLMA_RS02200 PF01926 50S ribosome-binding GTPase VCLMA_RS02205 PF06738 Putative threonine/serine exporter VCLMA_RS02210 PF12821 Threonine/Serine exporter, ThrE VCLMA_RS02215 PF00186 Dihydrofolate reductase VCLMA_RS02220 PF00149 Calcineurin-like phosphoesterase VCLMA_RS02225 PF04379 ApaG domain VCLMA_RS02230 PF00398 Ribosomal RNA adenine dimethylase VCLMA_RS02235 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VCLMA_RS02250 PF00226 DnaJ domain VCLMA_RS02250 PF05099 Tellurite resistance protein TerB VCLMA_RS02255 PF12729 Four helix bundle sensory module for signal transduction VCLMA_RS02255 PF00672 HAMP domain VCLMA_RS02255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS02275 PF01464 Transglycosylase SLT domain VCLMA_RS02275 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VCLMA_RS02280 PF04362 Bacterial Fe(2+) trafficking VCLMA_RS02285 PF00730 HhH-GPD superfamily base excision DNA repair protein VCLMA_RS02285 PF14815 NUDIX domain VCLMA_RS02285 PF00633 Helix-hairpin-helix motif VCLMA_RS02285 PF10576 Iron-sulfur binding domain of endonuclease III VCLMA_RS02290 PF02390 Putative methyltransferase VCLMA_RS02295 PF04960 Glutaminase VCLMA_RS02300 PF06969 HemN C-terminal domain VCLMA_RS02300 PF04055 Radical SAM superfamily VCLMA_RS02305 PF01725 Ham1 family VCLMA_RS02315 PF02594 Uncharacterised ACR, YggU family COG1872 VCLMA_RS02320 PF02325 YGGT family VCLMA_RS02325 PF14748 Pyrroline-5-carboxylate reductase dimerisation VCLMA_RS02325 PF03807 NADP oxidoreductase coenzyme F420-dependent VCLMA_RS02330 PF01168 Alanine racemase, N-terminal domain VCLMA_RS02335 PF00437 Type II/IV secretion system protein VCLMA_RS02350 PF00579 tRNA synthetases class I (W and Y) VCLMA_RS02350 PF01479 S4 domain VCLMA_RS02355 PF03652 Holliday junction resolvase VCLMA_RS02360 PF02622 Uncharacterized ACR, COG1678 VCLMA_RS02365 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VCLMA_RS02365 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VCLMA_RS02370 PF04452 RNA methyltransferase VCLMA_RS02375 PF04231 Endonuclease I VCLMA_RS02380 PF17283 SprT-like zinc ribbon domain VCLMA_RS02380 PF10263 SprT-like family VCLMA_RS02385 PF02772 S-adenosylmethionine synthetase, central domain VCLMA_RS02385 PF02773 S-adenosylmethionine synthetase, C-terminal domain VCLMA_RS02385 PF00438 S-adenosylmethionine synthetase, N-terminal domain VCLMA_RS02400 PF03466 LysR substrate binding domain VCLMA_RS02400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS02410 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCLMA_RS02410 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCLMA_RS02415 PF00162 Phosphoglycerate kinase VCLMA_RS02420 PF01116 Fructose-bisphosphate aldolase class-II VCLMA_RS02430 PF05552 Conserved TM helix VCLMA_RS02430 PF00924 Mechanosensitive ion channel VCLMA_RS02435 PF01810 LysE type translocator VCLMA_RS02440 PF03466 LysR substrate binding domain VCLMA_RS02440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS02445 PF04402 Protein of unknown function (DUF541) VCLMA_RS02455 PF00224 Pyruvate kinase, barrel domain VCLMA_RS02455 PF02887 Pyruvate kinase, alpha/beta domain VCLMA_RS02460 PF00455 DeoR C terminal sensor domain VCLMA_RS02460 PF08220 DeoR-like helix-turn-helix domain VCLMA_RS02465 PF01380 SIS domain VCLMA_RS02470 PF03480 Bacterial extracellular solute-binding protein, family 7 VCLMA_RS02500 PF09424 Yqey-like protein VCLMA_RS02505 PF01165 Ribosomal protein S21 VCLMA_RS02515 PF00561 alpha/beta hydrolase fold VCLMA_RS02520 PF02660 Glycerol-3-phosphate acyltransferase VCLMA_RS02525 PF02152 Dihydroneopterin aldolase VCLMA_RS02530 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VCLMA_RS02535 PF02673 Bacitracin resistance protein BacA VCLMA_RS02540 PF04977 Septum formation initiator VCLMA_RS02545 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VCLMA_RS02550 PF02542 YgbB family VCLMA_RS02555 PF01142 tRNA pseudouridine synthase D (TruD) VCLMA_RS02560 PF01975 Survival protein SurE VCLMA_RS02570 PF01551 Peptidase family M23 VCLMA_RS02570 PF01476 LysM domain VCLMA_RS02575 PF00140 Sigma-70 factor, region 1.2 VCLMA_RS02575 PF04539 Sigma-70 region 3 VCLMA_RS02575 PF04542 Sigma-70 region 2 VCLMA_RS02575 PF04545 Sigma-70, region 4 VCLMA_RS02580 PF05188 MutS domain II VCLMA_RS02580 PF05192 MutS domain III VCLMA_RS02580 PF05190 MutS family domain IV VCLMA_RS02580 PF01624 MutS domain I VCLMA_RS02580 PF00488 MutS domain V VCLMA_RS02585 PF00291 Pyridoxal-phosphate dependent enzyme VCLMA_RS02595 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS02600 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS02610 PF02464 Competence-damaged protein VCLMA_RS02615 PF00154 recA bacterial DNA recombination protein VCLMA_RS02620 PF02631 RecX family VCLMA_RS02625 PF01411 tRNA synthetases class II (A) VCLMA_RS02625 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VCLMA_RS02625 PF02272 DHHA1 domain VCLMA_RS02630 PF00696 Amino acid kinase family VCLMA_RS02630 PF13840 ACT domain VCLMA_RS02630 PF01842 ACT domain VCLMA_RS02635 PF02599 Global regulator protein family VCLMA_RS02690 PF04277 Oxaloacetate decarboxylase, gamma chain VCLMA_RS02700 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VCLMA_RS02705 PF00107 Zinc-binding dehydrogenase VCLMA_RS02705 PF08240 Alcohol dehydrogenase GroES-like domain VCLMA_RS02710 PF09335 SNARE associated Golgi protein VCLMA_RS02715 PF05193 Peptidase M16 inactive domain VCLMA_RS02715 PF00675 Insulinase (Peptidase family M16) VCLMA_RS02720 PF04262 Glutamate-cysteine ligase VCLMA_RS02725 PF02664 S-Ribosylhomocysteinase (LuxS) VCLMA_RS02730 PF01595 Cyclin M transmembrane N-terminal domain VCLMA_RS02730 PF03471 Transporter associated domain VCLMA_RS02730 PF00571 CBS domain VCLMA_RS02740 PF00448 SRP54-type protein, GTPase domain VCLMA_RS02740 PF02881 SRP54-type protein, helical bundle domain VCLMA_RS02740 PF02978 Signal peptide binding domain VCLMA_RS02745 PF00886 Ribosomal protein S16 VCLMA_RS02755 PF01746 tRNA (Guanine-1)-methyltransferase VCLMA_RS02760 PF01245 Ribosomal protein L19 VCLMA_RS02765 PF13180 PDZ domain VCLMA_RS02780 PF03969 AFG1-like ATPase VCLMA_RS02790 PF00572 Ribosomal protein L13 VCLMA_RS02795 PF00380 Ribosomal protein S9/S16 VCLMA_RS02800 PF00355 Rieske [2Fe-2S] domain VCLMA_RS02800 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VCLMA_RS02805 PF00033 Cytochrome b/b6/petB VCLMA_RS02805 PF00032 Cytochrome b(C-terminal)/b6/petD VCLMA_RS02815 PF00043 Glutathione S-transferase, C-terminal domain VCLMA_RS02815 PF02798 Glutathione S-transferase, N-terminal domain VCLMA_RS02820 PF04386 Stringent starvation protein B VCLMA_RS02825 PF04972 BON domain VCLMA_RS02830 PF13580 SIS domain VCLMA_RS02835 PF02021 Uncharacterised protein family UPF0102 VCLMA_RS02840 PF04348 LppC putative lipoprotein VCLMA_RS02845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCLMA_RS02850 PF00440 Bacterial regulatory proteins, tetR family VCLMA_RS02855 PF00156 Phosphoribosyl transferase domain VCLMA_RS02860 PF00484 Carbonic anhydrase VCLMA_RS02870 PF00005 ABC transporter VCLMA_RS02875 PF01061 ABC-2 type transporter VCLMA_RS02880 PF02569 Pantoate-beta-alanine ligase VCLMA_RS02885 PF02548 Ketopantoate hydroxymethyltransferase VCLMA_RS02890 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VCLMA_RS02895 PF12627 Probable RNA and SrmB- binding site of polymerase A VCLMA_RS02895 PF12626 Polymerase A arginine-rich C-terminus VCLMA_RS02895 PF01743 Poly A polymerase head domain VCLMA_RS02900 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCLMA_RS02905 PF01258 Prokaryotic dksA/traR C4-type zinc finger VCLMA_RS02910 PF03749 Sugar fermentation stimulation protein RE domain VCLMA_RS02910 PF17746 SfsA N-terminal OB domain VCLMA_RS02920 PF04408 Helicase associated domain (HA2) VCLMA_RS02920 PF00271 Helicase conserved C-terminal domain VCLMA_RS02920 PF00270 DEAD/DEAH box helicase VCLMA_RS02920 PF08482 ATP-dependent helicase C-terminal VCLMA_RS02925 PF00912 Transglycosylase VCLMA_RS02925 PF00905 Penicillin binding protein transpeptidase domain VCLMA_RS02925 PF14814 Bifunctional transglycosylase second domain VCLMA_RS02930 PF01734 Patatin-like phospholipase VCLMA_RS02935 PF11791 Aconitate B N-terminal domain VCLMA_RS02935 PF00330 Aconitase family (aconitate hydratase) VCLMA_RS02935 PF06434 Aconitate hydratase 2 N-terminus VCLMA_RS02940 PF06062 Uncharacterised protein family (UPF0231) VCLMA_RS02945 PF00543 Nitrogen regulatory protein P-II VCLMA_RS02950 PF00909 Ammonium Transporter Family VCLMA_RS02955 PF13416 Bacterial extracellular solute-binding protein VCLMA_RS02965 PF00005 ABC transporter VCLMA_RS02965 PF08402 TOBE domain VCLMA_RS02970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCLMA_RS02970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCLMA_RS02970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCLMA_RS02970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCLMA_RS02975 PF06165 Glycosyltransferase family 36 VCLMA_RS02975 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VCLMA_RS02980 PF02838 Glycosyl hydrolase family 20, domain 2 VCLMA_RS02980 PF00728 Glycosyl hydrolase family 20, catalytic domain VCLMA_RS02985 PF01869 BadF/BadG/BcrA/BcrD ATPase family VCLMA_RS02995 PF00005 ABC transporter VCLMA_RS02995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCLMA_RS03000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCLMA_RS03000 PF00005 ABC transporter VCLMA_RS03005 PF12911 N-terminal TM domain of oligopeptide transport permease C VCLMA_RS03005 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS03010 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS03025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS03025 PF00072 Response regulator receiver domain VCLMA_RS03025 PF01627 Hpt domain VCLMA_RS03025 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS03025 PF00672 HAMP domain VCLMA_RS03025 PF17149 Periplasmic sensor domain found in signal transduction proteins VCLMA_RS03030 PF05175 Methyltransferase small domain VCLMA_RS03030 PF08468 Methyltransferase small domain N-terminal VCLMA_RS03035 PF01594 AI-2E family transporter VCLMA_RS03045 PF00202 Aminotransferase class-III VCLMA_RS03050 PF01521 Iron-sulphur cluster biosynthesis VCLMA_RS03060 PF00873 AcrB/AcrD/AcrF family VCLMA_RS03065 PF01551 Peptidase family M23 VCLMA_RS03065 PF04225 Opacity-associated protein A LysM-like domain VCLMA_RS03070 PF00579 tRNA synthetases class I (W and Y) VCLMA_RS03070 PF01479 S4 domain VCLMA_RS03075 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VCLMA_RS03085 PF01272 Transcription elongation factor, GreA/GreB, C-term VCLMA_RS03085 PF03449 Transcription elongation factor, N-terminal VCLMA_RS03090 PF01985 CRS1 / YhbY (CRM) domain VCLMA_RS03095 PF01728 FtsJ-like methyltransferase VCLMA_RS03100 PF00004 ATPase family associated with various cellular activities (AAA) VCLMA_RS03100 PF17862 AAA+ lid domain VCLMA_RS03100 PF01434 Peptidase family M41 VCLMA_RS03100 PF06480 FtsH Extracellular VCLMA_RS03105 PF00809 Pterin binding enzyme VCLMA_RS03110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCLMA_RS03110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCLMA_RS03110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCLMA_RS03110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCLMA_RS03115 PF03840 Preprotein translocase SecG subunit VCLMA_RS03130 PF17384 RimP C-terminal SH3 domain VCLMA_RS03130 PF02576 RimP N-terminal domain VCLMA_RS03135 PF00575 S1 RNA binding domain VCLMA_RS03135 PF08529 NusA N-terminal domain VCLMA_RS03135 PF13184 NusA-like KH domain VCLMA_RS03145 PF02033 Ribosome-binding factor A VCLMA_RS03150 PF09157 Pseudouridine synthase II TruB, C-terminal VCLMA_RS03150 PF01509 TruB family pseudouridylate synthase (N terminal domain) VCLMA_RS03150 PF16198 tRNA pseudouridylate synthase B C-terminal domain VCLMA_RS03155 PF00312 Ribosomal protein S15 VCLMA_RS03165 PF13181 Tetratricopeptide repeat VCLMA_RS03165 PF07719 Tetratricopeptide repeat VCLMA_RS03180 PF01136 Peptidase family U32 VCLMA_RS03185 PF01136 Peptidase family U32 VCLMA_RS03190 PF00563 EAL domain VCLMA_RS03190 PF03707 Bacterial signalling protein N terminal repeat VCLMA_RS03190 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS03195 PF02036 SCP-2 sterol transfer family VCLMA_RS03200 PF13508 Acetyltransferase (GNAT) domain VCLMA_RS03215 PF03707 Bacterial signalling protein N terminal repeat VCLMA_RS03215 PF00563 EAL domain VCLMA_RS03215 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS03225 PF00270 DEAD/DEAH box helicase VCLMA_RS03225 PF00271 Helicase conserved C-terminal domain VCLMA_RS03230 PF05175 Methyltransferase small domain VCLMA_RS03235 PF05525 Branched-chain amino acid transport protein VCLMA_RS03240 PF00472 RF-1 domain VCLMA_RS03240 PF03462 PCRF domain VCLMA_RS03245 PF01336 OB-fold nucleic acid binding domain VCLMA_RS03245 PF00152 tRNA synthetases class II (D, K and N) VCLMA_RS03250 PF00072 Response regulator receiver domain VCLMA_RS03250 PF00158 Sigma-54 interaction domain VCLMA_RS03250 PF02954 Bacterial regulatory protein, Fis family VCLMA_RS03260 PF00248 Aldo/keto reductase family VCLMA_RS03265 PF02976 DNA mismatch repair enzyme MutH VCLMA_RS03270 PF00293 NUDIX domain VCLMA_RS03275 PF02896 PEP-utilising enzyme, TIM barrel domain VCLMA_RS03275 PF01590 GAF domain VCLMA_RS03275 PF00391 PEP-utilising enzyme, mobile domain VCLMA_RS03275 PF05524 PEP-utilising enzyme, N-terminal VCLMA_RS03280 PF01925 Sulfite exporter TauE/SafE VCLMA_RS03285 PF01790 Prolipoprotein diacylglyceryl transferase VCLMA_RS03290 PF00303 Thymidylate synthase VCLMA_RS03295 PF02690 Na+/Pi-cotransporter VCLMA_RS03300 PF03466 LysR substrate binding domain VCLMA_RS03300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS03305 PF01022 Bacterial regulatory protein, arsR family VCLMA_RS03310 PF01649 Ribosomal protein S20 VCLMA_RS03315 PF03023 Lipid II flippase MurJ VCLMA_RS03320 PF01687 Riboflavin kinase VCLMA_RS03320 PF06574 FAD synthetase VCLMA_RS03325 PF08264 Anticodon-binding domain of tRNA VCLMA_RS03325 PF00133 tRNA synthetases class I (I, L, M and V) VCLMA_RS03325 PF06827 Zinc finger found in FPG and IleRS VCLMA_RS03330 PF01252 Signal peptidase (SPase) II VCLMA_RS03335 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCLMA_RS03340 PF02401 LytB protein VCLMA_RS03345 PF02554 Carbon starvation protein CstA VCLMA_RS03355 PF13580 SIS domain VCLMA_RS03360 PF03702 Anhydro-N-acetylmuramic acid kinase VCLMA_RS03365 PF00933 Glycosyl hydrolase family 3 N terminal domain VCLMA_RS03370 PF04397 LytTr DNA-binding domain VCLMA_RS03370 PF00072 Response regulator receiver domain VCLMA_RS03375 PF07694 5TMR of 5TMR-LYT VCLMA_RS03375 PF06580 Histidine kinase VCLMA_RS03380 PF00793 DAHP synthetase I family VCLMA_RS03385 PF02153 Prephenate dehydrogenase VCLMA_RS03385 PF01817 Chorismate mutase type II VCLMA_RS03390 PF07238 PilZ domain VCLMA_RS03395 PF00005 ABC transporter VCLMA_RS03395 PF12848 ABC transporter VCLMA_RS03400 PF14718 Soluble lytic murein transglycosylase L domain VCLMA_RS03400 PF01464 Transglycosylase SLT domain VCLMA_RS03405 PF01371 Trp repressor protein VCLMA_RS03410 PF01931 Protein of unknown function DUF84 VCLMA_RS03415 PF00563 EAL domain VCLMA_RS03415 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS03420 PF13416 Bacterial extracellular solute-binding protein VCLMA_RS03425 PF01817 Chorismate mutase type II VCLMA_RS03425 PF00800 Prephenate dehydratase VCLMA_RS03430 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VCLMA_RS03435 PF13525 Outer membrane lipoprotein VCLMA_RS03440 PF01479 S4 domain VCLMA_RS03440 PF00849 RNA pseudouridylate synthase VCLMA_RS03445 PF02578 Multi-copper polyphenol oxidoreductase laccase VCLMA_RS03485 PF00881 Nitroreductase family VCLMA_RS03490 PF00037 4Fe-4S binding domain VCLMA_RS03495 PF16325 Peptidase family U32 C-terminal domain VCLMA_RS03495 PF01136 Peptidase family U32 VCLMA_RS03500 PF04381 Putative exonuclease, RdgC VCLMA_RS03505 PF00486 Transcriptional regulatory protein, C terminal VCLMA_RS03505 PF00072 Response regulator receiver domain VCLMA_RS03510 PF00989 PAS fold VCLMA_RS03510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS03510 PF11808 Phosphate regulon sensor protein PhoR VCLMA_RS03510 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS03515 PF12849 PBP superfamily domain VCLMA_RS03520 PF02541 Ppx/GppA phosphatase family VCLMA_RS03525 PF13090 Polyphosphate kinase C-terminal domain 2 VCLMA_RS03525 PF17941 Polyphosphate kinase C-terminal domain 1 VCLMA_RS03525 PF13089 Polyphosphate kinase N-terminal domain VCLMA_RS03525 PF02503 Polyphosphate kinase middle domain VCLMA_RS03530 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS03535 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS03540 PF00005 ABC transporter VCLMA_RS03545 PF01895 PhoU domain VCLMA_RS03550 PF03976 Polyphosphate kinase 2 (PPK2) VCLMA_RS03555 PF03932 CutC family VCLMA_RS03560 PF10417 C-terminal domain of 1-Cys peroxiredoxin VCLMA_RS03560 PF00578 AhpC/TSA family VCLMA_RS03565 PF03466 LysR substrate binding domain VCLMA_RS03565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS03585 PF02547 Queuosine biosynthesis protein VCLMA_RS03595 PF01702 Queuine tRNA-ribosyltransferase VCLMA_RS03600 PF02699 Preprotein translocase subunit VCLMA_RS03605 PF07549 SecD/SecF GG Motif VCLMA_RS03605 PF02355 Protein export membrane protein VCLMA_RS03605 PF13721 SecD export protein N-terminal TM region VCLMA_RS03610 PF07549 SecD/SecF GG Motif VCLMA_RS03610 PF02355 Protein export membrane protein VCLMA_RS03615 PF00459 Inositol monophosphatase family VCLMA_RS03620 PF00588 SpoU rRNA Methylase family VCLMA_RS03630 PF00266 Aminotransferase class-V VCLMA_RS03635 PF01592 NifU-like N terminal domain VCLMA_RS03640 PF01521 Iron-sulphur cluster biosynthesis VCLMA_RS03645 PF07743 HSCB C-terminal oligomerisation domain VCLMA_RS03645 PF00226 DnaJ domain VCLMA_RS03655 PF00111 2Fe-2S iron-sulfur cluster binding domain VCLMA_RS03660 PF04384 Iron-sulphur cluster assembly VCLMA_RS03665 PF12404 Peptidase VCLMA_RS03665 PF00883 Cytosol aminopeptidase family, catalytic domain VCLMA_RS03670 PF00334 Nucleoside diphosphate kinase VCLMA_RS03675 PF04055 Radical SAM superfamily VCLMA_RS03680 PF13464 Domain of unknown function (DUF4115) VCLMA_RS03685 PF04551 GcpE protein VCLMA_RS03695 PF09976 Tetratricopeptide repeat-like domain VCLMA_RS03700 PF13360 PQQ-like domain VCLMA_RS03705 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VCLMA_RS03705 PF01926 50S ribosome-binding GTPase VCLMA_RS03720 PF13742 OB-fold nucleic acid binding domain VCLMA_RS03720 PF02601 Exonuclease VII, large subunit VCLMA_RS03725 PF00478 IMP dehydrogenase / GMP reductase domain VCLMA_RS03725 PF00571 CBS domain VCLMA_RS03730 PF00117 Glutamine amidotransferase class-I VCLMA_RS03730 PF02540 NAD synthase VCLMA_RS03730 PF00958 GMP synthase C terminal domain VCLMA_RS03735 PF06483 Chitinase C VCLMA_RS03735 PF00704 Glycosyl hydrolases family 18 VCLMA_RS03740 PF01184 GPR1/FUN34/yaaH family VCLMA_RS03745 PF00857 Isochorismatase family VCLMA_RS03745 PF00550 Phosphopantetheine attachment site VCLMA_RS03750 PF13193 AMP-binding enzyme C-terminal domain VCLMA_RS03750 PF00501 AMP-binding enzyme VCLMA_RS03755 PF00425 chorismate binding enzyme VCLMA_RS03770 PF01497 Periplasmic binding protein VCLMA_RS03775 PF01032 FecCD transport family VCLMA_RS03780 PF01032 FecCD transport family VCLMA_RS03785 PF00005 ABC transporter VCLMA_RS03790 PF17837 4'-phosphopantetheinyl transferase N-terminal domain VCLMA_RS03790 PF01648 4'-phosphopantetheinyl transferase superfamily VCLMA_RS03795 PF01032 FecCD transport family VCLMA_RS03800 PF00005 ABC transporter VCLMA_RS03810 PF01235 Sodium:alanine symporter family VCLMA_RS03815 PF01266 FAD dependent oxidoreductase VCLMA_RS03820 PF03466 LysR substrate binding domain VCLMA_RS03820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS03835 PF12431 Transcriptional regulator VCLMA_RS03835 PF00072 Response regulator receiver domain VCLMA_RS03840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS03840 PF17203 Single cache domain 3 VCLMA_RS03845 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VCLMA_RS03850 PF00682 HMGL-like VCLMA_RS03850 PF02436 Conserved carboxylase domain VCLMA_RS03850 PF00364 Biotin-requiring enzyme VCLMA_RS03855 PF04277 Oxaloacetate decarboxylase, gamma chain VCLMA_RS03860 PF03390 2-hydroxycarboxylate transporter family VCLMA_RS03870 PF06857 Malonate decarboxylase delta subunit (MdcD) VCLMA_RS03880 PF04223 Citrate lyase, alpha subunit (CitF) VCLMA_RS03885 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase VCLMA_RS03900 PF08032 RNA 2'-O ribose methyltransferase substrate binding VCLMA_RS03900 PF00588 SpoU rRNA Methylase family VCLMA_RS03905 PF11953 Domain of unknown function (DUF3470) VCLMA_RS03905 PF00037 4Fe-4S binding domain VCLMA_RS03965 PF00589 Phage integrase family VCLMA_RS03965 PF13356 Arm DNA-binding domain VCLMA_RS03970 PF01668 SmpB protein VCLMA_RS03975 PF03364 Polyketide cyclase / dehydrase and lipid transport VCLMA_RS03980 PF03658 RnfH family Ubiquitin VCLMA_RS03985 PF04355 SmpA / OmlA family VCLMA_RS03995 PF01513 ATP-NAD kinase VCLMA_RS04000 PF01025 GrpE VCLMA_RS04005 PF00012 Hsp70 protein VCLMA_RS04010 PF00226 DnaJ domain VCLMA_RS04010 PF00684 DnaJ central domain VCLMA_RS04010 PF01556 DnaJ C terminal domain VCLMA_RS04015 PF07963 Prokaryotic N-terminal methylation motif VCLMA_RS04015 PF00114 Pilin (bacterial filament) VCLMA_RS04045 PF03806 AbgT putative transporter family VCLMA_RS04050 PF14437 MafB19-like deaminase VCLMA_RS04060 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCLMA_RS04060 PF01464 Transglycosylase SLT domain VCLMA_RS04070 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VCLMA_RS04070 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VCLMA_RS04070 PF02769 AIR synthase related protein, C-terminal domain VCLMA_RS04075 PF01797 Transposase IS200 like VCLMA_RS04085 PF06786 Uncharacterised protein family (UPF0253) VCLMA_RS04100 PF04073 Aminoacyl-tRNA editing domain VCLMA_RS04100 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCLMA_RS04100 PF03129 Anticodon binding domain VCLMA_RS04105 PF18389 TrmO C-terminal domain VCLMA_RS04105 PF01980 tRNA-methyltransferase O VCLMA_RS04110 PF01197 Ribosomal protein L31 VCLMA_RS04115 PF00444 Ribosomal protein L36 VCLMA_RS04125 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VCLMA_RS04135 PF13302 Acetyltransferase (GNAT) domain VCLMA_RS04150 PF04287 tRNA pseudouridine synthase C VCLMA_RS04155 PF00849 RNA pseudouridylate synthase VCLMA_RS04160 PF02779 Transketolase, pyrimidine binding domain VCLMA_RS04160 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VCLMA_RS04160 PF02780 Transketolase, C-terminal domain VCLMA_RS04165 PF00348 Polyprenyl synthetase VCLMA_RS04175 PF01618 MotA/TolQ/ExbB proton channel family VCLMA_RS04185 PF02568 Thiamine biosynthesis protein (ThiI) VCLMA_RS04185 PF02926 THUMP domain VCLMA_RS04195 PF03466 LysR substrate binding domain VCLMA_RS04195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS04200 PF04241 Protein of unknown function (DUF423) VCLMA_RS04205 PF01367 5'-3' exonuclease, C-terminal SAM fold VCLMA_RS04205 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VCLMA_RS04210 PF03641 Possible lysine decarboxylase VCLMA_RS04210 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VCLMA_RS04210 PF11892 Domain of unknown function (DUF3412) VCLMA_RS04215 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS04225 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VCLMA_RS04225 PF14489 QueF-like protein VCLMA_RS04230 PF07348 Syd protein (SUKH-2) VCLMA_RS04235 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VCLMA_RS04240 PF03180 NLPA lipoprotein VCLMA_RS04245 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS04250 PF09383 NIL domain VCLMA_RS04250 PF00005 ABC transporter VCLMA_RS04260 PF00356 Bacterial regulatory proteins, lacI family VCLMA_RS04265 PF00367 phosphotransferase system, EIIB VCLMA_RS04265 PF02378 Phosphotransferase system, EIIC VCLMA_RS04270 PF00128 Alpha amylase, catalytic domain VCLMA_RS04270 PF16657 Maltogenic Amylase, C-terminal domain VCLMA_RS04295 PF13533 Biotin-lipoyl like VCLMA_RS04305 PF02350 UDP-N-acetylglucosamine 2-epimerase VCLMA_RS04310 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VCLMA_RS04310 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VCLMA_RS04310 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VCLMA_RS04330 PF03808 Glycosyl transferase WecB/TagA/CpsF family VCLMA_RS04345 PF12561 ToxR activated gene A lipoprotein domain VCLMA_RS04345 PF17945 Beta/Gamma crystallin VCLMA_RS04360 PF02397 Bacterial sugar transferase VCLMA_RS04370 PF10531 SLBB domain VCLMA_RS04370 PF02563 Polysaccharide biosynthesis/export protein VCLMA_RS04370 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VCLMA_RS04375 PF13807 G-rich domain on putative tyrosine kinase VCLMA_RS04375 PF13614 AAA domain VCLMA_RS04375 PF02706 Chain length determinant protein VCLMA_RS04395 PF00464 Serine hydroxymethyltransferase VCLMA_RS04405 PF04055 Radical SAM superfamily VCLMA_RS04405 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VCLMA_RS04410 PF03099 Biotin/lipoate A/B protein ligase family VCLMA_RS04415 PF04359 Protein of unknown function (DUF493) VCLMA_RS04425 PF00768 D-alanyl-D-alanine carboxypeptidase VCLMA_RS04425 PF07943 Penicillin-binding protein 5, C-terminal domain VCLMA_RS04430 PF05036 Sporulation related domain VCLMA_RS04430 PF03330 Lytic transglycolase VCLMA_RS04435 PF01098 Cell cycle protein VCLMA_RS04440 PF03717 Penicillin-binding Protein dimerisation domain VCLMA_RS04440 PF00905 Penicillin binding protein transpeptidase domain VCLMA_RS04445 PF02590 Predicted SPOUT methyltransferase VCLMA_RS04455 PF06144 DNA polymerase III, delta subunit VCLMA_RS04455 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VCLMA_RS04460 PF04390 Lipopolysaccharide-assembly VCLMA_RS04465 PF13603 Leucyl-tRNA synthetase, Domain 2 VCLMA_RS04465 PF00133 tRNA synthetases class I (I, L, M and V) VCLMA_RS04465 PF08264 Anticodon-binding domain of tRNA VCLMA_RS04470 PF07295 Zinc-ribbon containing domain VCLMA_RS04480 PF00571 CBS domain VCLMA_RS04480 PF03471 Transporter associated domain VCLMA_RS04485 PF02130 Uncharacterized protein family UPF0054 VCLMA_RS04495 PF00919 Uncharacterized protein family UPF0004 VCLMA_RS04495 PF04055 Radical SAM superfamily VCLMA_RS04495 PF01938 TRAM domain VCLMA_RS04500 PF01494 FAD binding domain VCLMA_RS04505 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VCLMA_RS04510 PF05524 PEP-utilising enzyme, N-terminal VCLMA_RS04510 PF00391 PEP-utilising enzyme, mobile domain VCLMA_RS04510 PF02896 PEP-utilising enzyme, TIM barrel domain VCLMA_RS04515 PF00381 PTS HPr component phosphorylation site VCLMA_RS04525 PF00291 Pyridoxal-phosphate dependent enzyme VCLMA_RS04535 PF04354 ZipA, C-terminal FtsZ-binding domain VCLMA_RS04540 PF03120 NAD-dependent DNA ligase OB-fold domain VCLMA_RS04540 PF01653 NAD-dependent DNA ligase adenylation domain VCLMA_RS04540 PF00533 BRCA1 C Terminus (BRCT) domain VCLMA_RS04540 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VCLMA_RS04540 PF12826 Helix-hairpin-helix motif VCLMA_RS04545 PF13609 Gram-negative porin VCLMA_RS04555 PF13411 MerR HTH family regulatory protein VCLMA_RS04560 PF01957 NfeD-like C-terminal, partner-binding VCLMA_RS04565 PF16200 C-terminal region of band_7 VCLMA_RS04565 PF01145 SPFH domain / Band 7 family VCLMA_RS04570 PF00085 Thioredoxin VCLMA_RS04575 PF00106 short chain dehydrogenase VCLMA_RS04585 PF12850 Calcineurin-like phosphoesterase superfamily domain VCLMA_RS04595 PF17323 Trans-membrane regulatory protein ToxS VCLMA_RS04600 PF00486 Transcriptional regulatory protein, C terminal VCLMA_RS04605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS04605 PF00183 Hsp90 protein VCLMA_RS04610 PF05191 Adenylate kinase, active site lid VCLMA_RS04615 PF00762 Ferrochelatase VCLMA_RS04620 PF00854 POT family VCLMA_RS04625 PF02357 Transcription termination factor nusG VCLMA_RS04630 PF00733 Asparagine synthase VCLMA_RS04630 PF13537 Glutamine amidotransferase domain VCLMA_RS04635 PF02254 TrkA-N domain VCLMA_RS04635 PF00999 Sodium/hydrogen exchanger family VCLMA_RS04640 PF01047 MarR family VCLMA_RS04640 PF00480 ROK family VCLMA_RS04650 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VCLMA_RS04650 PF02378 Phosphotransferase system, EIIC VCLMA_RS04650 PF00367 phosphotransferase system, EIIB VCLMA_RS04655 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCLMA_RS04655 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VCLMA_RS04675 PF01416 tRNA pseudouridine synthase VCLMA_RS04680 PF17848 Acetyl-coA carboxylase zinc finger domain VCLMA_RS04680 PF01039 Carboxyl transferase domain VCLMA_RS04685 PF02875 Mur ligase family, glutamate ligase domain VCLMA_RS04685 PF08245 Mur ligase middle domain VCLMA_RS04690 PF05036 Sporulation related domain VCLMA_RS04695 PF02674 Colicin V production protein VCLMA_RS04700 PF00156 Phosphoribosyl transferase domain VCLMA_RS04705 PF13726 Na+-H+ antiporter family VCLMA_RS04705 PF03553 Na+/H+ antiporter family VCLMA_RS04710 PF00929 Exonuclease VCLMA_RS04725 PF10952 Protein of unknown function (DUF2753) VCLMA_RS04730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCLMA_RS04735 PF00633 Helix-hairpin-helix motif VCLMA_RS04735 PF10576 Iron-sulfur binding domain of endonuclease III VCLMA_RS04735 PF00730 HhH-GPD superfamily base excision DNA repair protein VCLMA_RS04740 PF02508 Rnf-Nqr subunit, membrane protein VCLMA_RS04745 PF04205 FMN-binding domain VCLMA_RS04755 PF13375 RnfC Barrel sandwich hybrid domain VCLMA_RS04755 PF10531 SLBB domain VCLMA_RS04755 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VCLMA_RS04755 PF12838 4Fe-4S dicluster domain VCLMA_RS04760 PF04060 Putative Fe-S cluster VCLMA_RS04765 PF02508 Rnf-Nqr subunit, membrane protein VCLMA_RS04775 PF04851 Type III restriction enzyme, res subunit VCLMA_RS04775 PF00271 Helicase conserved C-terminal domain VCLMA_RS04775 PF12344 Ultra-violet resistance protein B VCLMA_RS04775 PF17757 UvrB interaction domain VCLMA_RS04775 PF02151 UvrB/uvrC motif VCLMA_RS04785 PF02954 Bacterial regulatory protein, Fis family VCLMA_RS04785 PF00072 Response regulator receiver domain VCLMA_RS04785 PF00158 Sigma-54 interaction domain VCLMA_RS04790 PF01627 Hpt domain VCLMA_RS04795 PF01933 Uncharacterised protein family UPF0052 VCLMA_RS04800 PF04055 Radical SAM superfamily VCLMA_RS04800 PF06463 Molybdenum Cofactor Synthesis C VCLMA_RS04810 PF01967 MoaC family VCLMA_RS04815 PF02597 ThiS family VCLMA_RS04820 PF02391 MoaE protein VCLMA_RS04830 PF00571 CBS domain VCLMA_RS04830 PF01743 Poly A polymerase head domain VCLMA_RS04840 PF00403 Heavy-metal-associated domain VCLMA_RS04845 PF01048 Phosphorylase superfamily VCLMA_RS04855 PF09334 tRNA synthetases class I (M) VCLMA_RS04855 PF01588 Putative tRNA binding domain VCLMA_RS04870 PF00485 Phosphoribulokinase / Uridine kinase family VCLMA_RS04875 PF05170 AsmA family VCLMA_RS04880 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VCLMA_RS04880 PF12557 Cob(I)alamin adenosyltransferase N terminal VCLMA_RS04895 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VCLMA_RS04905 PF08281 Sigma-70, region 4 VCLMA_RS04905 PF04542 Sigma-70 region 2 VCLMA_RS04910 PF02803 Thiolase, C-terminal domain VCLMA_RS04910 PF00108 Thiolase, N-terminal domain VCLMA_RS04915 PF00378 Enoyl-CoA hydratase/isomerase VCLMA_RS04915 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VCLMA_RS04915 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VCLMA_RS04920 PF00881 Nitroreductase family VCLMA_RS04925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS04925 PF03466 LysR substrate binding domain VCLMA_RS04930 PF00072 Response regulator receiver domain VCLMA_RS04940 PF04304 Protein of unknown function (DUF454) VCLMA_RS04945 PF00156 Phosphoribosyl transferase domain VCLMA_RS04950 PF12170 DNA polymerase III tau subunit V interacting with alpha VCLMA_RS04950 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VCLMA_RS04950 PF12169 DNA polymerase III subunits gamma and tau domain III VCLMA_RS04955 PF02575 YbaB/EbfC DNA-binding family VCLMA_RS04960 PF13662 Toprim domain VCLMA_RS04960 PF02132 RecR protein VCLMA_RS04965 PF03692 Putative zinc- or iron-chelating domain VCLMA_RS04970 PF03692 Putative zinc- or iron-chelating domain VCLMA_RS04975 PF00106 short chain dehydrogenase VCLMA_RS04980 PF01343 Peptidase family S49 VCLMA_RS04980 PF08496 Peptidase family S49 N-terminal VCLMA_RS04990 PF01037 Lrp/AsnC ligand binding domain VCLMA_RS04990 PF13404 AsnC-type helix-turn-helix domain VCLMA_RS05005 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VCLMA_RS05015 PF08448 PAS fold VCLMA_RS05015 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS05020 PF01022 Bacterial regulatory protein, arsR family VCLMA_RS05025 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCLMA_RS05025 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCLMA_RS05040 PF06483 Chitinase C VCLMA_RS05040 PF00704 Glycosyl hydrolases family 18 VCLMA_RS05050 PF01161 Phosphatidylethanolamine-binding protein VCLMA_RS05070 PF01300 Telomere recombination VCLMA_RS05070 PF03481 Putative GTP-binding controlling metal-binding VCLMA_RS05085 PF00072 Response regulator receiver domain VCLMA_RS05095 PF13426 PAS domain VCLMA_RS05095 PF13188 PAS domain VCLMA_RS05095 PF00989 PAS fold VCLMA_RS05095 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS05095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS05100 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS05100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS05105 PF00563 EAL domain VCLMA_RS05105 PF13188 PAS domain VCLMA_RS05105 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS05105 PF03707 Bacterial signalling protein N terminal repeat VCLMA_RS05110 PF02954 Bacterial regulatory protein, Fis family VCLMA_RS05110 PF00072 Response regulator receiver domain VCLMA_RS05110 PF00158 Sigma-54 interaction domain VCLMA_RS05115 PF13188 PAS domain VCLMA_RS05115 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS05115 PF08448 PAS fold VCLMA_RS05115 PF00072 Response regulator receiver domain VCLMA_RS05115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS05125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCLMA_RS05130 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS05135 PF12911 N-terminal TM domain of oligopeptide transport permease C VCLMA_RS05135 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS05140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCLMA_RS05140 PF00005 ABC transporter VCLMA_RS05145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCLMA_RS05145 PF00005 ABC transporter VCLMA_RS05150 PF13409 Glutathione S-transferase, N-terminal domain VCLMA_RS05180 PF02653 Branched-chain amino acid transport system / permease component VCLMA_RS05185 PF00005 ABC transporter VCLMA_RS05190 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS05195 PF01207 Dihydrouridine synthase (Dus) VCLMA_RS05200 PF02810 SEC-C motif VCLMA_RS05200 PF07517 SecA DEAD-like domain VCLMA_RS05200 PF01043 SecA preprotein cross-linking domain VCLMA_RS05200 PF07516 SecA Wing and Scaffold domain VCLMA_RS05205 PF03548 Outer membrane lipoprotein carrier protein LolA VCLMA_RS05210 PF00004 ATPase family associated with various cellular activities (AAA) VCLMA_RS05210 PF16193 AAA C-terminal domain VCLMA_RS05210 PF12002 MgsA AAA+ ATPase C terminal VCLMA_RS05215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCLMA_RS05215 PF02403 Seryl-tRNA synthetase N-terminal domain VCLMA_RS05225 PF06968 Biotin and Thiamin Synthesis associated domain VCLMA_RS05225 PF04055 Radical SAM superfamily VCLMA_RS05230 PF00155 Aminotransferase class I and II VCLMA_RS05235 PF08241 Methyltransferase domain VCLMA_RS05250 PF01435 Peptidase family M48 VCLMA_RS05260 PF00106 short chain dehydrogenase VCLMA_RS05285 PF16036 Chalcone isomerase-like VCLMA_RS05295 PF00206 Lyase VCLMA_RS05295 PF08328 Adenylosuccinate lyase C-terminal VCLMA_RS05300 PF04356 Protein of unknown function (DUF489) VCLMA_RS05310 PF00294 pfkB family carbohydrate kinase VCLMA_RS05315 PF00816 H-NS histone family VCLMA_RS05325 PF08029 HisG, C-terminal domain VCLMA_RS05325 PF01634 ATP phosphoribosyltransferase VCLMA_RS05330 PF00815 Histidinol dehydrogenase VCLMA_RS05335 PF00155 Aminotransferase class I and II VCLMA_RS05340 PF00475 Imidazoleglycerol-phosphate dehydratase VCLMA_RS05340 PF08645 Polynucleotide kinase 3 phosphatase VCLMA_RS05345 PF00117 Glutamine amidotransferase class-I VCLMA_RS05350 PF00977 Histidine biosynthesis protein VCLMA_RS05355 PF00977 Histidine biosynthesis protein VCLMA_RS05360 PF01502 Phosphoribosyl-AMP cyclohydrolase VCLMA_RS05360 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VCLMA_RS05365 PF00849 RNA pseudouridylate synthase VCLMA_RS05370 PF03971 Monomeric isocitrate dehydrogenase VCLMA_RS05375 PF00313 'Cold-shock' DNA-binding domain VCLMA_RS05380 PF02617 ATP-dependent Clp protease adaptor protein ClpS VCLMA_RS05385 PF00004 ATPase family associated with various cellular activities (AAA) VCLMA_RS05385 PF17871 AAA lid domain VCLMA_RS05385 PF02861 Clp amino terminal domain, pathogenicity island component VCLMA_RS05385 PF10431 C-terminal, D2-small domain, of ClpB protein VCLMA_RS05385 PF07724 AAA domain (Cdc48 subfamily) VCLMA_RS05390 PF02080 TrkA-C domain VCLMA_RS05390 PF06826 Predicted Permease Membrane Region VCLMA_RS05395 PF00462 Glutaredoxin VCLMA_RS05400 PF00465 Iron-containing alcohol dehydrogenase VCLMA_RS05405 PF01380 SIS domain VCLMA_RS05405 PF01418 Helix-turn-helix domain, rpiR family VCLMA_RS05410 PF00282 Pyridoxal-dependent decarboxylase conserved domain VCLMA_RS05420 PF03956 Lysine exporter LysO VCLMA_RS05430 PF04993 TfoX N-terminal domain VCLMA_RS05430 PF04994 TfoX C-terminal domain VCLMA_RS05445 PF00989 PAS fold VCLMA_RS05445 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS05445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS05455 PF00266 Aminotransferase class-V VCLMA_RS05470 PF08443 RimK-like ATP-grasp domain VCLMA_RS05470 PF18030 RimK PreATP-grasp domain VCLMA_RS05475 PF08003 Protein of unknown function (DUF1698) VCLMA_RS05480 PF13649 Methyltransferase domain VCLMA_RS05485 PF01904 Protein of unknown function DUF72 VCLMA_RS05490 PF01336 OB-fold nucleic acid binding domain VCLMA_RS05490 PF00152 tRNA synthetases class II (D, K and N) VCLMA_RS05490 PF02938 GAD domain VCLMA_RS05495 PF00265 Thymidine kinase VCLMA_RS05500 PF00375 Sodium:dicarboxylate symporter family VCLMA_RS05505 PF00290 Tryptophan synthase alpha chain VCLMA_RS05510 PF00291 Pyridoxal-phosphate dependent enzyme VCLMA_RS05515 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VCLMA_RS05515 PF00218 Indole-3-glycerol phosphate synthase VCLMA_RS05525 PF00117 Glutamine amidotransferase class-I VCLMA_RS05530 PF04715 Anthranilate synthase component I, N terminal region VCLMA_RS05530 PF00425 chorismate binding enzyme VCLMA_RS05535 PF08056 Tryptophan operon leader peptide VCLMA_RS05540 PF02811 PHP domain VCLMA_RS05545 PF01300 Telomere recombination VCLMA_RS05550 PF00849 RNA pseudouridylate synthase VCLMA_RS05550 PF01479 S4 domain VCLMA_RS05555 PF00664 ABC transporter transmembrane region VCLMA_RS05555 PF00005 ABC transporter VCLMA_RS05565 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCLMA_RS05575 PF00266 Aminotransferase class-V VCLMA_RS05580 PF08448 PAS fold VCLMA_RS05580 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS05585 PF02698 DUF218 domain VCLMA_RS05625 PF13488 Glycine zipper VCLMA_RS05625 PF00691 OmpA family VCLMA_RS05645 PF04191 Phospholipid methyltransferase VCLMA_RS05650 PF00089 Trypsin VCLMA_RS05660 PF00221 Aromatic amino acid lyase VCLMA_RS05665 PF17392 Urocanase C-terminal domain VCLMA_RS05665 PF17391 Urocanase N-terminal domain VCLMA_RS05665 PF01175 Urocanase Rossmann-like domain VCLMA_RS05670 PF00491 Arginase family VCLMA_RS05675 PF01979 Amidohydrolase family VCLMA_RS05680 PF00392 Bacterial regulatory proteins, gntR family VCLMA_RS05680 PF07702 UTRA domain VCLMA_RS05690 PF04269 Protein of unknown function, DUF440 VCLMA_RS05695 PF09285 Elongation factor P, C-terminal VCLMA_RS05695 PF08207 Elongation factor P (EF-P) KOW-like domain VCLMA_RS05695 PF01132 Elongation factor P (EF-P) OB domain VCLMA_RS05705 PF00563 EAL domain VCLMA_RS05705 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS05705 PF13426 PAS domain VCLMA_RS05710 PF00136 DNA polymerase family B VCLMA_RS05710 PF03104 DNA polymerase family B, exonuclease domain VCLMA_RS05715 PF00072 Response regulator receiver domain VCLMA_RS05715 PF00196 Bacterial regulatory proteins, luxR family VCLMA_RS05720 PF02151 UvrB/uvrC motif VCLMA_RS05720 PF08459 UvrC Helix-hairpin-helix N-terminal VCLMA_RS05720 PF01541 GIY-YIG catalytic domain VCLMA_RS05725 PF01066 CDP-alcohol phosphatidyltransferase VCLMA_RS05750 PF00072 Response regulator receiver domain VCLMA_RS05750 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS05760 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VCLMA_RS05760 PF01409 tRNA synthetases class II core domain (F) VCLMA_RS05770 PF00216 Bacterial DNA-binding protein VCLMA_RS05790 PF05724 Thiopurine S-methyltransferase (TPMT) VCLMA_RS05800 PF02222 ATP-grasp domain VCLMA_RS05810 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VCLMA_RS05810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCLMA_RS05815 PF04172 LrgB-like family VCLMA_RS05820 PF03788 LrgA family VCLMA_RS05825 PF08411 Exonuclease C-terminal VCLMA_RS05825 PF00929 Exonuclease VCLMA_RS05830 PF00375 Sodium:dicarboxylate symporter family VCLMA_RS05835 PF01641 SelR domain VCLMA_RS05840 PF02277 Phosphoribosyltransferase VCLMA_RS05845 PF02654 Cobalamin-5-phosphate synthase VCLMA_RS05850 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VCLMA_RS05860 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VCLMA_RS05865 PF01032 FecCD transport family VCLMA_RS05870 PF00005 ABC transporter VCLMA_RS05885 PF17200 Single Cache domain 2 VCLMA_RS05885 PF00672 HAMP domain VCLMA_RS05885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS05910 PF00175 Oxidoreductase NAD-binding domain VCLMA_RS05910 PF00970 Oxidoreductase FAD-binding domain VCLMA_RS05910 PF00111 2Fe-2S iron-sulfur cluster binding domain VCLMA_RS05915 PF00268 Ribonucleotide reductase, small chain VCLMA_RS05920 PF02867 Ribonucleotide reductase, barrel domain VCLMA_RS05920 PF03477 ATP cone domain VCLMA_RS05920 PF00317 Ribonucleotide reductase, all-alpha domain VCLMA_RS05935 PF00581 Rhodanese-like domain VCLMA_RS05935 PF17773 UPF0176 acylphosphatase like domain VCLMA_RS05945 PF07690 Major Facilitator Superfamily VCLMA_RS05955 PF00925 GTP cyclohydrolase II VCLMA_RS05985 PF05951 Bacterial protein of unknown function (DUF882) VCLMA_RS05990 PF00753 Metallo-beta-lactamase superfamily VCLMA_RS06015 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCLMA_RS06020 PF17200 Single Cache domain 2 VCLMA_RS06020 PF07730 Histidine kinase VCLMA_RS06025 PF00072 Response regulator receiver domain VCLMA_RS06025 PF00196 Bacterial regulatory proteins, luxR family VCLMA_RS06030 PF01047 MarR family VCLMA_RS06035 PF02028 BCCT, betaine/carnitine/choline family transporter VCLMA_RS06040 PF01522 Polysaccharide deacetylase VCLMA_RS06045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCLMA_RS06050 PF02378 Phosphotransferase system, EIIC VCLMA_RS06055 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VCLMA_RS06060 PF02056 Family 4 glycosyl hydrolase VCLMA_RS06060 PF11975 Family 4 glycosyl hydrolase C-terminal domain VCLMA_RS06065 PF04794 YdjC-like protein VCLMA_RS06070 PF00356 Bacterial regulatory proteins, lacI family VCLMA_RS06075 PF13506 Glycosyl transferase family 21 VCLMA_RS06080 PF04349 Periplasmic glucan biosynthesis protein, MdoG VCLMA_RS06085 PF17200 Single Cache domain 2 VCLMA_RS06085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS06085 PF00672 HAMP domain VCLMA_RS06100 PF00155 Aminotransferase class I and II VCLMA_RS06110 PF01966 HD domain VCLMA_RS06110 PF00672 HAMP domain VCLMA_RS06115 PF08543 Phosphomethylpyrimidine kinase VCLMA_RS06120 PF01336 OB-fold nucleic acid binding domain VCLMA_RS06120 PF00152 tRNA synthetases class II (D, K and N) VCLMA_RS06125 PF00672 HAMP domain VCLMA_RS06125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS06125 PF12729 Four helix bundle sensory module for signal transduction VCLMA_RS06130 PF01242 6-pyruvoyl tetrahydropterin synthase VCLMA_RS06135 PF03315 Serine dehydratase beta chain VCLMA_RS06135 PF03313 Serine dehydratase alpha chain VCLMA_RS06140 PF03222 Tryptophan/tyrosine permease family VCLMA_RS06145 PF00293 NUDIX domain VCLMA_RS06150 PF00425 chorismate binding enzyme VCLMA_RS06150 PF04715 Anthranilate synthase component I, N terminal region VCLMA_RS06165 PF04317 YcjX-like family, DUF463 VCLMA_RS06170 PF05128 Domain of unknown function (DUF697) VCLMA_RS06175 PF18024 Helix-turn-helix domain VCLMA_RS06175 PF00158 Sigma-54 interaction domain VCLMA_RS06180 PF13302 Acetyltransferase (GNAT) domain VCLMA_RS06200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS06200 PF00672 HAMP domain VCLMA_RS06205 PF00939 Sodium:sulfate symporter transmembrane region VCLMA_RS06210 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS06210 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCLMA_RS06210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS06215 PF02954 Bacterial regulatory protein, Fis family VCLMA_RS06215 PF00158 Sigma-54 interaction domain VCLMA_RS06215 PF00072 Response regulator receiver domain VCLMA_RS06220 PF04393 Protein of unknown function (DUF535) VCLMA_RS06225 PF06629 MltA-interacting protein MipA VCLMA_RS06230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS06230 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS06230 PF00672 HAMP domain VCLMA_RS06235 PF00486 Transcriptional regulatory protein, C terminal VCLMA_RS06235 PF00072 Response regulator receiver domain VCLMA_RS06260 PF13407 Periplasmic binding protein domain VCLMA_RS06275 PF02653 Branched-chain amino acid transport system / permease component VCLMA_RS06290 PF01970 Tripartite tricarboxylate transporter TctA family VCLMA_RS06305 PF07729 FCD domain VCLMA_RS06305 PF00392 Bacterial regulatory proteins, gntR family VCLMA_RS06315 PF00285 Citrate synthase, C-terminal domain VCLMA_RS06345 PF01546 Peptidase family M20/M25/M40 VCLMA_RS06345 PF07687 Peptidase dimerisation domain VCLMA_RS06350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCLMA_RS06365 PF14497 Glutathione S-transferase, C-terminal domain VCLMA_RS06365 PF02798 Glutathione S-transferase, N-terminal domain VCLMA_RS06370 PF00072 Response regulator receiver domain VCLMA_RS06380 PF00462 Glutaredoxin VCLMA_RS06380 PF08534 Redoxin VCLMA_RS06390 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS06395 PF17785 PUA-like domain VCLMA_RS06395 PF10672 S-adenosylmethionine-dependent methyltransferase VCLMA_RS06400 PF00708 Acylphosphatase VCLMA_RS06405 PF04358 DsrC like protein VCLMA_RS06410 PF01027 Inhibitor of apoptosis-promoting Bax1 VCLMA_RS06415 PF00005 ABC transporter VCLMA_RS06420 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS06425 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS06430 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCLMA_RS06435 PF14824 Sirohaem biosynthesis protein central VCLMA_RS06435 PF10414 Sirohaem synthase dimerisation region VCLMA_RS06435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCLMA_RS06445 PF04055 Radical SAM superfamily VCLMA_RS06450 PF06508 Queuosine biosynthesis protein QueC VCLMA_RS06470 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS06470 PF00563 EAL domain VCLMA_RS06470 PF03707 Bacterial signalling protein N terminal repeat VCLMA_RS06480 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS06480 PF17158 Membrane-associated sensor, integral membrane domain VCLMA_RS06490 PF00012 Hsp70 protein VCLMA_RS06500 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS06500 PF03707 Bacterial signalling protein N terminal repeat VCLMA_RS06500 PF00563 EAL domain VCLMA_RS06530 PF04408 Helicase associated domain (HA2) VCLMA_RS06530 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VCLMA_RS06530 PF00271 Helicase conserved C-terminal domain VCLMA_RS06530 PF00270 DEAD/DEAH box helicase VCLMA_RS06530 PF11898 Domain of unknown function (DUF3418) VCLMA_RS06545 PF10437 Bacterial lipoate protein ligase C-terminus VCLMA_RS06545 PF03099 Biotin/lipoate A/B protein ligase family VCLMA_RS06555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS06555 PF03466 LysR substrate binding domain VCLMA_RS06560 PF07690 Major Facilitator Superfamily VCLMA_RS06565 PF00875 DNA photolyase VCLMA_RS06565 PF03441 FAD binding domain of DNA photolyase VCLMA_RS06570 PF00893 Small Multidrug Resistance protein VCLMA_RS06575 PF00672 HAMP domain VCLMA_RS06575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS06580 PF00072 Response regulator receiver domain VCLMA_RS06590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS06590 PF01584 CheW-like domain VCLMA_RS06590 PF02895 Signal transducing histidine kinase, homodimeric domain VCLMA_RS06590 PF01627 Hpt domain VCLMA_RS06590 PF07194 P2 response regulator binding domain VCLMA_RS06595 PF00072 Response regulator receiver domain VCLMA_RS06595 PF01627 Hpt domain VCLMA_RS06595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS06595 PF01584 CheW-like domain VCLMA_RS06595 PF02895 Signal transducing histidine kinase, homodimeric domain VCLMA_RS06600 PF01739 CheR methyltransferase, SAM binding domain VCLMA_RS06600 PF03705 CheR methyltransferase, all-alpha domain VCLMA_RS06610 PF00072 Response regulator receiver domain VCLMA_RS06610 PF01339 CheB methylesterase VCLMA_RS06615 PF01584 CheW-like domain VCLMA_RS06620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS06620 PF02743 Cache domain VCLMA_RS06620 PF00672 HAMP domain VCLMA_RS06625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS06625 PF00672 HAMP domain VCLMA_RS06625 PF02743 Cache domain VCLMA_RS06630 PF13426 PAS domain VCLMA_RS06630 PF08447 PAS fold VCLMA_RS06630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS06635 PF00271 Helicase conserved C-terminal domain VCLMA_RS06635 PF00270 DEAD/DEAH box helicase VCLMA_RS06645 PF02321 Outer membrane efflux protein VCLMA_RS06650 PF00529 HlyD membrane-fusion protein of T1SS VCLMA_RS06650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCLMA_RS06655 PF07690 Major Facilitator Superfamily VCLMA_RS06660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS06660 PF00672 HAMP domain VCLMA_RS06660 PF02743 Cache domain VCLMA_RS06665 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VCLMA_RS06670 PF05638 Type VI secretion system effector, Hcp VCLMA_RS06680 PF16671 Actin cross-linking domain VCLMA_RS06680 PF04717 Type VI secretion system, phage-baseplate injector VCLMA_RS06685 PF01810 LysE type translocator VCLMA_RS06690 PF01235 Sodium:alanine symporter family VCLMA_RS06710 PF13416 Bacterial extracellular solute-binding protein VCLMA_RS06715 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS06720 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS06725 PF00005 ABC transporter VCLMA_RS06725 PF08402 TOBE domain VCLMA_RS06745 PF01171 PP-loop family VCLMA_RS06750 PF00582 Universal stress protein family VCLMA_RS06755 PF13545 Crp-like helix-turn-helix domain VCLMA_RS06755 PF00027 Cyclic nucleotide-binding domain VCLMA_RS06780 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VCLMA_RS06780 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VCLMA_RS06795 PF00115 Cytochrome C and Quinol oxidase polypeptide I VCLMA_RS06810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS06810 PF09308 LuxQ, periplasmic VCLMA_RS06810 PF00072 Response regulator receiver domain VCLMA_RS06810 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS06815 PF00664 ABC transporter transmembrane region VCLMA_RS06815 PF03412 Peptidase C39 family VCLMA_RS06815 PF00005 ABC transporter VCLMA_RS06825 PF00664 ABC transporter transmembrane region VCLMA_RS06825 PF03412 Peptidase C39 family VCLMA_RS06825 PF00005 ABC transporter VCLMA_RS06835 PF02794 RTX toxin acyltransferase family VCLMA_RS06840 PF07634 RtxA repeat VCLMA_RS06840 PF11647 Membrane Localization Domain VCLMA_RS06840 PF12146 Serine aminopeptidase, S33 VCLMA_RS06840 PF11713 Peptidase C80 family VCLMA_RS06840 PF16671 Actin cross-linking domain VCLMA_RS06845 PF01527 Transposase VCLMA_RS06850 PF00665 Integrase core domain VCLMA_RS06865 PF17414 MatP C-terminal ribbon-helix-helix domain VCLMA_RS06865 PF06303 MatP N-terminal domain VCLMA_RS06870 PF05362 Lon protease (S16) C-terminal proteolytic domain VCLMA_RS06870 PF13654 AAA domain VCLMA_RS06875 PF07977 FabA-like domain VCLMA_RS06880 PF04957 Ribosome modulation factor VCLMA_RS06890 PF00005 ABC transporter VCLMA_RS06890 PF16326 ABC transporter C-terminal domain VCLMA_RS06890 PF12848 ABC transporter VCLMA_RS06900 PF10672 S-adenosylmethionine-dependent methyltransferase VCLMA_RS06900 PF01170 Putative RNA methylase family UPF0020 VCLMA_RS06900 PF02926 THUMP domain VCLMA_RS06905 PF07126 Cell-division protein ZapC VCLMA_RS06910 PF01180 Dihydroorotate dehydrogenase VCLMA_RS06915 PF05088 Bacterial NAD-glutamate dehydrogenase VCLMA_RS06925 PF11940 Domain of unknown function (DUF3458) Ig-like fold VCLMA_RS06925 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VCLMA_RS06925 PF01433 Peptidase family M1 domain VCLMA_RS06935 PF00595 PDZ domain VCLMA_RS06935 PF11818 C-terminal domain of tail specific protease (DUF3340) VCLMA_RS06935 PF17804 Tail specific protease N-terminal domain VCLMA_RS06935 PF03572 Peptidase family S41 VCLMA_RS06940 PF17516 ProQ C-terminal domain VCLMA_RS06940 PF04352 ProQ/FINO family VCLMA_RS06945 PF13185 GAF domain VCLMA_RS06950 PF00664 ABC transporter transmembrane region VCLMA_RS06950 PF00005 ABC transporter VCLMA_RS06955 PF04403 Paraquat-inducible protein A VCLMA_RS06960 PF02470 MlaD protein VCLMA_RS06965 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VCLMA_RS06965 PF01189 16S rRNA methyltransferase RsmB/F VCLMA_RS06965 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VCLMA_RS06970 PF17783 CvfB-like winged helix domain VCLMA_RS06970 PF13509 S1 domain VCLMA_RS06985 PF00793 DAHP synthetase I family VCLMA_RS06990 PF04461 Protein of unknown function (DUF520) VCLMA_RS06995 PF02146 Sir2 family VCLMA_RS07010 PF13247 4Fe-4S dicluster domain VCLMA_RS07025 PF02613 Nitrate reductase delta subunit VCLMA_RS07045 PF02634 FdhD/NarQ family VCLMA_RS07050 PF00005 ABC transporter VCLMA_RS07050 PF12848 ABC transporter VCLMA_RS07055 PF00989 PAS fold VCLMA_RS07055 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS07055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS07060 PF02954 Bacterial regulatory protein, Fis family VCLMA_RS07060 PF00158 Sigma-54 interaction domain VCLMA_RS07060 PF00072 Response regulator receiver domain VCLMA_RS07065 PF12849 PBP superfamily domain VCLMA_RS07070 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS07075 PF08402 TOBE domain VCLMA_RS07075 PF00005 ABC transporter VCLMA_RS07080 PF12804 MobA-like NTP transferase domain VCLMA_RS07085 PF03454 MoeA C-terminal region (domain IV) VCLMA_RS07085 PF00994 Probable molybdopterin binding domain VCLMA_RS07085 PF03453 MoeA N-terminal region (domain I and II) VCLMA_RS07100 PF00480 ROK family VCLMA_RS07105 PF03942 DTW domain VCLMA_RS07115 PF12729 Four helix bundle sensory module for signal transduction VCLMA_RS07115 PF00672 HAMP domain VCLMA_RS07115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS07120 PF00877 NlpC/P60 family VCLMA_RS07130 PF03881 Fructosamine kinase VCLMA_RS07140 PF01554 MatE VCLMA_RS07150 PF01068 ATP dependent DNA ligase domain VCLMA_RS07150 PF14743 DNA ligase OB-like domain VCLMA_RS07160 PF03544 Gram-negative bacterial TonB protein C-terminal VCLMA_RS07165 PF02472 Biopolymer transport protein ExbD/TolR VCLMA_RS07175 PF01618 MotA/TolQ/ExbB proton channel family VCLMA_RS07185 PF13416 Bacterial extracellular solute-binding protein VCLMA_RS07190 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS07195 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS07205 PF08220 DeoR-like helix-turn-helix domain VCLMA_RS07205 PF00455 DeoR C terminal sensor domain VCLMA_RS07210 PF03009 Glycerophosphoryl diester phosphodiesterase family VCLMA_RS07215 PF04074 YhcH/YjgK/YiaL VCLMA_RS07220 PF01042 Endoribonuclease L-PSP VCLMA_RS07225 PF00356 Bacterial regulatory proteins, lacI family VCLMA_RS07230 PF00232 Glycosyl hydrolase family 1 VCLMA_RS07235 PF00141 Peroxidase VCLMA_RS07250 PF00529 HlyD membrane-fusion protein of T1SS VCLMA_RS07260 PF00005 ABC transporter VCLMA_RS07260 PF12704 MacB-like periplasmic core domain VCLMA_RS07260 PF02687 FtsX-like permease family VCLMA_RS07265 PF12704 MacB-like periplasmic core domain VCLMA_RS07265 PF02687 FtsX-like permease family VCLMA_RS07265 PF00005 ABC transporter VCLMA_RS07270 PF12704 MacB-like periplasmic core domain VCLMA_RS07270 PF02687 FtsX-like permease family VCLMA_RS07270 PF00005 ABC transporter VCLMA_RS07275 PF02322 Cytochrome bd terminal oxidase subunit II VCLMA_RS07280 PF01654 Cytochrome bd terminal oxidase subunit I VCLMA_RS07290 PF00206 Lyase VCLMA_RS07290 PF10415 Fumarase C C-terminus VCLMA_RS07305 PF04266 ASCH domain VCLMA_RS07320 PF00501 AMP-binding enzyme VCLMA_RS07320 PF13193 AMP-binding enzyme C-terminal domain VCLMA_RS07325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS07325 PF03466 LysR substrate binding domain VCLMA_RS07330 PF00361 Proton-conducting membrane transporter VCLMA_RS07330 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VCLMA_RS07335 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) VCLMA_RS07360 PF03466 LysR substrate binding domain VCLMA_RS07360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS07365 PF03306 Alpha-acetolactate decarboxylase VCLMA_RS07370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCLMA_RS07370 PF00205 Thiamine pyrophosphate enzyme, central domain VCLMA_RS07370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCLMA_RS07380 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS07380 PF00672 HAMP domain VCLMA_RS07380 PF17154 Gammaproteobacterial periplasmic sensor domain VCLMA_RS07380 PF00563 EAL domain VCLMA_RS07385 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS07390 PF01263 Aldose 1-epimerase VCLMA_RS07395 PF00288 GHMP kinases N terminal domain VCLMA_RS07395 PF08544 GHMP kinases C terminal VCLMA_RS07395 PF10509 Galactokinase galactose-binding signature VCLMA_RS07400 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VCLMA_RS07400 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VCLMA_RS07405 PF07690 Major Facilitator Superfamily VCLMA_RS07425 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS07425 PF00072 Response regulator receiver domain VCLMA_RS07440 PF01584 CheW-like domain VCLMA_RS07440 PF00072 Response regulator receiver domain VCLMA_RS07450 PF00072 Response regulator receiver domain VCLMA_RS07450 PF12431 Transcriptional regulator VCLMA_RS07455 PF00989 PAS fold VCLMA_RS07455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS07455 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VCLMA_RS07455 PF17203 Single cache domain 3 VCLMA_RS07470 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCLMA_RS07490 PF04204 Homoserine O-succinyltransferase VCLMA_RS07505 PF05971 RNA methyltransferase VCLMA_RS07510 PF01863 Protein of unknown function DUF45 VCLMA_RS07540 PF00691 OmpA family VCLMA_RS07540 PF05736 OprF membrane domain VCLMA_RS07560 PF06965 Na+/H+ antiporter 1 VCLMA_RS07570 PF02687 FtsX-like permease family VCLMA_RS07570 PF12704 MacB-like periplasmic core domain VCLMA_RS07575 PF00005 ABC transporter VCLMA_RS07580 PF01554 MatE VCLMA_RS07585 PF13460 NAD(P)H-binding VCLMA_RS07585 PF11066 Protein of unknown function (DUF2867) VCLMA_RS07595 PF07690 Major Facilitator Superfamily VCLMA_RS07600 PF01479 S4 domain VCLMA_RS07600 PF00849 RNA pseudouridylate synthase VCLMA_RS07605 PF04851 Type III restriction enzyme, res subunit VCLMA_RS07605 PF00271 Helicase conserved C-terminal domain VCLMA_RS07615 PF00486 Transcriptional regulatory protein, C terminal VCLMA_RS07615 PF00072 Response regulator receiver domain VCLMA_RS07620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS07625 PF01386 Ribosomal L25p family VCLMA_RS07630 PF00360 Phytochrome region VCLMA_RS07630 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS07630 PF01590 GAF domain VCLMA_RS07630 PF00563 EAL domain VCLMA_RS07665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCLMA_RS07665 PF12793 Sugar transport-related sRNA regulator N-term VCLMA_RS07675 PF04151 Bacterial pre-peptidase C-terminal domain VCLMA_RS07675 PF08453 Peptidase family M9 N-terminal VCLMA_RS07675 PF01752 Collagenase VCLMA_RS07685 PF00563 EAL domain VCLMA_RS07685 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS07685 PF03707 Bacterial signalling protein N terminal repeat VCLMA_RS07690 PF00072 Response regulator receiver domain VCLMA_RS07690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS07690 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS07690 PF09308 LuxQ, periplasmic VCLMA_RS07695 PF00571 CBS domain VCLMA_RS07695 PF01769 Divalent cation transporter VCLMA_RS07695 PF03448 MgtE intracellular N domain VCLMA_RS07705 PF03222 Tryptophan/tyrosine permease family VCLMA_RS07710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCLMA_RS07715 PF00005 ABC transporter VCLMA_RS07730 PF06945 Protein of unknown function (DUF1289) VCLMA_RS07740 PF13416 Bacterial extracellular solute-binding protein VCLMA_RS07745 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS07750 PF00005 ABC transporter VCLMA_RS07755 PF01066 CDP-alcohol phosphatidyltransferase VCLMA_RS07760 PF00849 RNA pseudouridylate synthase VCLMA_RS07765 PF00209 Sodium:neurotransmitter symporter family VCLMA_RS07770 PF13396 Phospholipase_D-nuclease N-terminal VCLMA_RS07770 PF13091 PLD-like domain VCLMA_RS07775 PF13091 PLD-like domain VCLMA_RS07775 PF13396 Phospholipase_D-nuclease N-terminal VCLMA_RS07780 PF01053 Cys/Met metabolism PLP-dependent enzyme VCLMA_RS07785 PF01053 Cys/Met metabolism PLP-dependent enzyme VCLMA_RS07790 PF03352 Methyladenine glycosylase VCLMA_RS07795 PF00873 AcrB/AcrD/AcrF family VCLMA_RS07800 PF13533 Biotin-lipoyl like VCLMA_RS07805 PF00529 HlyD membrane-fusion protein of T1SS VCLMA_RS07805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCLMA_RS07820 PF04012 PspA/IM30 family VCLMA_RS07825 PF00158 Sigma-54 interaction domain VCLMA_RS07825 PF02954 Bacterial regulatory protein, Fis family VCLMA_RS07835 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS07840 PF12911 N-terminal TM domain of oligopeptide transport permease C VCLMA_RS07840 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS07845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCLMA_RS07845 PF00005 ABC transporter VCLMA_RS07850 PF00005 ABC transporter VCLMA_RS07865 PF01368 DHH family VCLMA_RS07865 PF02833 DHHA2 domain VCLMA_RS07885 PF03264 NapC/NirT cytochrome c family, N-terminal region VCLMA_RS07890 PF06796 Periplasmic nitrate reductase protein NapE VCLMA_RS07895 PF01226 Formate/nitrite transporter VCLMA_RS07905 PF01370 NAD dependent epimerase/dehydratase family VCLMA_RS07920 PF04279 Intracellular septation protein A VCLMA_RS07925 PF03061 Thioesterase superfamily VCLMA_RS07930 PF03795 YCII-related domain VCLMA_RS07940 PF01717 Cobalamin-independent synthase, Catalytic domain VCLMA_RS07940 PF08267 Cobalamin-independent synthase, N-terminal domain VCLMA_RS07945 PF03466 LysR substrate binding domain VCLMA_RS07945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS07965 PF00563 EAL domain VCLMA_RS07965 PF08448 PAS fold VCLMA_RS07965 PF08447 PAS fold VCLMA_RS07965 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS07970 PF08497 Radical SAM N-terminal VCLMA_RS07970 PF04055 Radical SAM superfamily VCLMA_RS07970 PF11842 Domain of unknown function (DUF3362) VCLMA_RS07975 PF01810 LysE type translocator VCLMA_RS07980 PF01037 Lrp/AsnC ligand binding domain VCLMA_RS07990 PF04288 MukE-like family VCLMA_RS07995 PF17192 MukF middle domain VCLMA_RS07995 PF17193 MukF C-terminal domain VCLMA_RS07995 PF03882 MukF winged-helix domain VCLMA_RS08000 PF13847 Methyltransferase domain VCLMA_RS08005 PF02698 DUF218 domain VCLMA_RS08010 PF00072 Response regulator receiver domain VCLMA_RS08010 PF00486 Transcriptional regulatory protein, C terminal VCLMA_RS08015 PF02613 Nitrate reductase delta subunit VCLMA_RS08025 PF04994 TfoX C-terminal domain VCLMA_RS08025 PF04993 TfoX N-terminal domain VCLMA_RS08045 PF00534 Glycosyl transferases group 1 VCLMA_RS08045 PF08323 Starch synthase catalytic domain VCLMA_RS08060 PF10692 Protein of unknown function (DUF2498) VCLMA_RS08075 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VCLMA_RS08080 PF04376 Arginine-tRNA-protein transferase, N terminus VCLMA_RS08080 PF04377 Arginine-tRNA-protein transferase, C terminus VCLMA_RS08085 PF01176 Translation initiation factor 1A / IF-1 VCLMA_RS08090 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VCLMA_RS08090 PF12241 Trans-2-enoyl-CoA reductase catalytic region VCLMA_RS08090 PF07055 Enoyl reductase FAD binding domain VCLMA_RS08095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VCLMA_RS08095 PF09317 Domain of unknown function (DUF1974) VCLMA_RS08095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VCLMA_RS08095 PF02770 Acyl-CoA dehydrogenase, middle domain VCLMA_RS08100 PF16295 Tetracyclin repressor-like, C-terminal domain VCLMA_RS08100 PF00440 Bacterial regulatory proteins, tetR family VCLMA_RS08110 PF07383 Protein of unknown function (DUF1496) VCLMA_RS08115 PF00171 Aldehyde dehydrogenase family VCLMA_RS08120 PF00440 Bacterial regulatory proteins, tetR family VCLMA_RS08120 PF08362 YcdC-like protein, C-terminal region VCLMA_RS08160 PF00589 Phage integrase family VCLMA_RS08160 PF13356 Arm DNA-binding domain VCLMA_RS08170 PF01344 Kelch motif VCLMA_RS08175 PF01418 Helix-turn-helix domain, rpiR family VCLMA_RS08175 PF01380 SIS domain VCLMA_RS08180 PF00701 Dihydrodipicolinate synthetase family VCLMA_RS08185 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCLMA_RS08190 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VCLMA_RS08195 PF03480 Bacterial extracellular solute-binding protein, family 7 VCLMA_RS08210 PF00480 ROK family VCLMA_RS08215 PF01979 Amidohydrolase family VCLMA_RS08220 PF09264 Vibrio cholerae sialidase, lectin insertion VCLMA_RS08220 PF13088 BNR repeat-like domain VCLMA_RS08230 PF04002 RadC-like JAB domain VCLMA_RS08235 PF00665 Integrase core domain VCLMA_RS08250 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VCLMA_RS08260 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VCLMA_RS08265 PF00480 ROK family VCLMA_RS08320 PF00875 DNA photolyase VCLMA_RS08320 PF03441 FAD binding domain of DNA photolyase VCLMA_RS08330 PF09905 DNA-binding protein VF530 VCLMA_RS08335 PF00158 Sigma-54 interaction domain VCLMA_RS08335 PF02954 Bacterial regulatory protein, Fis family VCLMA_RS08335 PF01590 GAF domain VCLMA_RS08340 PF00171 Aldehyde dehydrogenase family VCLMA_RS08360 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCLMA_RS08370 PF12833 Helix-turn-helix domain VCLMA_RS08375 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCLMA_RS08375 PF02378 Phosphotransferase system, EIIC VCLMA_RS08375 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCLMA_RS08385 PF06610 L-alanine exporter VCLMA_RS08390 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS08390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS08390 PF00072 Response regulator receiver domain VCLMA_RS08390 PF09308 LuxQ, periplasmic VCLMA_RS08400 PF02445 Quinolinate synthetase A protein VCLMA_RS08410 PF00691 OmpA family VCLMA_RS08415 PF04052 TolB amino-terminal domain VCLMA_RS08415 PF07676 WD40-like Beta Propeller Repeat VCLMA_RS08425 PF02472 Biopolymer transport protein ExbD/TolR VCLMA_RS08430 PF01618 MotA/TolQ/ExbB proton channel family VCLMA_RS08435 PF03061 Thioesterase superfamily VCLMA_RS08440 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) VCLMA_RS08445 PF08173 Membrane bound YbgT-like protein VCLMA_RS08450 PF02322 Cytochrome bd terminal oxidase subunit II VCLMA_RS08455 PF01654 Cytochrome bd terminal oxidase subunit I VCLMA_RS08460 PF17864 RuvB AAA lid domain VCLMA_RS08460 PF05491 RuvB C-terminal winged helix domain VCLMA_RS08460 PF05496 Holliday junction DNA helicase RuvB P-loop domain VCLMA_RS08465 PF07499 RuvA, C-terminal domain VCLMA_RS08465 PF01330 RuvA N terminal domain VCLMA_RS08470 PF02075 Crossover junction endodeoxyribonuclease RuvC VCLMA_RS08475 PF01406 tRNA synthetases class I (C) catalytic domain VCLMA_RS08475 PF09190 DALR domain VCLMA_RS08480 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VCLMA_RS08485 PF00149 Calcineurin-like phosphoesterase VCLMA_RS08490 PF00563 EAL domain VCLMA_RS08490 PF08668 HDOD domain VCLMA_RS08495 PF02810 SEC-C motif VCLMA_RS08500 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VCLMA_RS08505 PF13609 Gram-negative porin VCLMA_RS08510 PF06733 DEAD_2 VCLMA_RS08510 PF13307 Helicase C-terminal domain VCLMA_RS08515 PF01925 Sulfite exporter TauE/SafE VCLMA_RS08520 PF07445 Primosomal replication protein priC VCLMA_RS08525 PF10689 Protein of unknown function (DUF2496) VCLMA_RS08530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS08530 PF00672 HAMP domain VCLMA_RS08535 PF03372 Endonuclease/Exonuclease/phosphatase family VCLMA_RS08540 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS08545 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS08550 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCLMA_RS08555 PF00005 ABC transporter VCLMA_RS08580 PF04055 Radical SAM superfamily VCLMA_RS08590 PF03887 YfbU domain VCLMA_RS08595 PF08298 PrkA AAA domain VCLMA_RS08595 PF06798 PrkA serine protein kinase C-terminal domain VCLMA_RS08610 PF02348 Cytidylyltransferase VCLMA_RS08615 PF03966 Trm112p-like protein VCLMA_RS08620 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VCLMA_RS08625 PF00005 ABC transporter VCLMA_RS08625 PF00664 ABC transporter transmembrane region VCLMA_RS08630 PF13567 Domain of unknown function (DUF4131) VCLMA_RS08630 PF00753 Metallo-beta-lactamase superfamily VCLMA_RS08630 PF03772 Competence protein VCLMA_RS08640 PF12704 MacB-like periplasmic core domain VCLMA_RS08640 PF02687 FtsX-like permease family VCLMA_RS08645 PF00005 ABC transporter VCLMA_RS08650 PF02687 FtsX-like permease family VCLMA_RS08650 PF12704 MacB-like periplasmic core domain VCLMA_RS08670 PF16458 Beta-prism lectin VCLMA_RS08670 PF12563 Hemolytic toxin N terminal VCLMA_RS08670 PF07968 Leukocidin/Hemolysin toxin family VCLMA_RS08680 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCLMA_RS08685 PF05728 Uncharacterised protein family (UPF0227) VCLMA_RS08695 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VCLMA_RS08695 PF13036 Peptidoglycan-synthase activator LpoB VCLMA_RS08710 PF01230 HIT domain VCLMA_RS08715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS08715 PF00672 HAMP domain VCLMA_RS08725 PF07840 FadR C-terminal domain VCLMA_RS08725 PF00392 Bacterial regulatory proteins, gntR family VCLMA_RS08735 PF02600 Disulfide bond formation protein DsbB VCLMA_RS08740 PF01580 FtsK/SpoIIIE family VCLMA_RS08740 PF09397 Ftsk gamma domain VCLMA_RS08740 PF17854 FtsK alpha domain VCLMA_RS08740 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VCLMA_RS08745 PF01037 Lrp/AsnC ligand binding domain VCLMA_RS08750 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VCLMA_RS08750 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VCLMA_RS08760 PF03466 LysR substrate binding domain VCLMA_RS08760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS08770 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VCLMA_RS08775 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VCLMA_RS08780 PF18073 Rubredoxin metal binding domain VCLMA_RS08785 PF06305 Lipopolysaccharide assembly protein A domain VCLMA_RS08790 PF00216 Bacterial DNA-binding protein VCLMA_RS08795 PF00575 S1 RNA binding domain VCLMA_RS08800 PF02224 Cytidylate kinase VCLMA_RS08810 PF13145 PPIC-type PPIASE domain VCLMA_RS08815 PF00216 Bacterial DNA-binding protein VCLMA_RS08825 PF06689 ClpX C4-type zinc finger VCLMA_RS08825 PF07724 AAA domain (Cdc48 subfamily) VCLMA_RS08825 PF10431 C-terminal, D2-small domain, of ClpB protein VCLMA_RS08830 PF00574 Clp protease VCLMA_RS08835 PF05697 Bacterial trigger factor protein (TF) VCLMA_RS08835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCLMA_RS08835 PF05698 Bacterial trigger factor protein (TF) C-terminus VCLMA_RS08845 PF02743 Cache domain VCLMA_RS08845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS08845 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS08850 PF00158 Sigma-54 interaction domain VCLMA_RS08850 PF02954 Bacterial regulatory protein, Fis family VCLMA_RS08850 PF00072 Response regulator receiver domain VCLMA_RS08855 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCLMA_RS08860 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VCLMA_RS08865 PF03480 Bacterial extracellular solute-binding protein, family 7 VCLMA_RS08870 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VCLMA_RS08885 PF13188 PAS domain VCLMA_RS08885 PF00563 EAL domain VCLMA_RS08885 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS08885 PF03707 Bacterial signalling protein N terminal repeat VCLMA_RS08930 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VCLMA_RS08930 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VCLMA_RS08935 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VCLMA_RS08940 PF01494 FAD binding domain VCLMA_RS08945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS08945 PF03466 LysR substrate binding domain VCLMA_RS08955 PF01568 Molydopterin dinucleotide binding domain VCLMA_RS08955 PF18364 Molybdopterin oxidoreductase N-terminal domain VCLMA_RS08955 PF00384 Molybdopterin oxidoreductase VCLMA_RS08960 PF03264 NapC/NirT cytochrome c family, N-terminal region VCLMA_RS08965 PF00704 Glycosyl hydrolases family 18 VCLMA_RS08970 PF07670 Nucleoside recognition VCLMA_RS08970 PF01773 Na+ dependent nucleoside transporter N-terminus VCLMA_RS08970 PF07662 Na+ dependent nucleoside transporter C-terminus VCLMA_RS08975 PF03466 LysR substrate binding domain VCLMA_RS08975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS08980 PF13406 Transglycosylase SLT domain VCLMA_RS08985 PF05166 YcgL domain VCLMA_RS08990 PF05209 Septum formation inhibitor MinC, N-terminal domain VCLMA_RS08990 PF03775 Septum formation inhibitor MinC, C-terminal domain VCLMA_RS08995 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VCLMA_RS09000 PF03776 Septum formation topological specificity factor MinE VCLMA_RS09005 PF04170 NlpE N-terminal domain VCLMA_RS09025 PF07690 Major Facilitator Superfamily VCLMA_RS09035 PF12729 Four helix bundle sensory module for signal transduction VCLMA_RS09035 PF00672 HAMP domain VCLMA_RS09035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS09040 PF01381 Helix-turn-helix VCLMA_RS09040 PF07883 Cupin domain VCLMA_RS09045 PF03594 Benzoate membrane transport protein VCLMA_RS09050 PF13193 AMP-binding enzyme C-terminal domain VCLMA_RS09050 PF00501 AMP-binding enzyme VCLMA_RS09055 PF13378 Enolase C-terminal domain-like VCLMA_RS09060 PF00378 Enoyl-CoA hydratase/isomerase VCLMA_RS09065 PF12697 Alpha/beta hydrolase family VCLMA_RS09070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCLMA_RS09070 PF16582 Middle domain of thiamine pyrophosphate VCLMA_RS09070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCLMA_RS09075 PF00425 chorismate binding enzyme VCLMA_RS09080 PF00155 Aminotransferase class I and II VCLMA_RS09090 PF01966 HD domain VCLMA_RS09090 PF13286 Phosphohydrolase-associated domain VCLMA_RS09110 PF00501 AMP-binding enzyme VCLMA_RS09110 PF13193 AMP-binding enzyme C-terminal domain VCLMA_RS09115 PF00570 HRDC domain VCLMA_RS09115 PF01612 3'-5' exonuclease VCLMA_RS09120 PF13193 AMP-binding enzyme C-terminal domain VCLMA_RS09120 PF00501 AMP-binding enzyme VCLMA_RS09125 PF00561 alpha/beta hydrolase fold VCLMA_RS09140 PF00814 Glycoprotease family VCLMA_RS09145 PF13307 Helicase C-terminal domain VCLMA_RS09145 PF04851 Type III restriction enzyme, res subunit VCLMA_RS09155 PF00551 Formyl transferase VCLMA_RS09155 PF01842 ACT domain VCLMA_RS09160 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCLMA_RS09160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VCLMA_RS09165 PF01343 Peptidase family S49 VCLMA_RS09170 PF17763 Glutaminase/Asparaginase C-terminal domain VCLMA_RS09170 PF00710 Asparaginase, N-terminal VCLMA_RS09175 PF07023 Protein of unknown function (DUF1315) VCLMA_RS09185 PF01641 SelR domain VCLMA_RS09190 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCLMA_RS09190 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCLMA_RS09195 PF01263 Aldose 1-epimerase VCLMA_RS09205 PF13847 Methyltransferase domain VCLMA_RS09220 PF01584 CheW-like domain VCLMA_RS09220 PF00072 Response regulator receiver domain VCLMA_RS09225 PF00480 ROK family VCLMA_RS09230 PF02887 Pyruvate kinase, alpha/beta domain VCLMA_RS09230 PF00224 Pyruvate kinase, barrel domain VCLMA_RS09235 PF01734 Patatin-like phospholipase VCLMA_RS09250 PF00209 Sodium:neurotransmitter symporter family VCLMA_RS09255 PF00367 phosphotransferase system, EIIB VCLMA_RS09255 PF02378 Phosphotransferase system, EIIC VCLMA_RS09260 PF01026 TatD related DNase VCLMA_RS09265 PF09115 DNA polymerase III, delta subunit, C terminal VCLMA_RS09270 PF02223 Thymidylate kinase VCLMA_RS09275 PF02618 YceG-like family VCLMA_RS09280 PF01063 Amino-transferase class IV VCLMA_RS09285 PF00109 Beta-ketoacyl synthase, N-terminal domain VCLMA_RS09285 PF02801 Beta-ketoacyl synthase, C-terminal domain VCLMA_RS09290 PF00550 Phosphopantetheine attachment site VCLMA_RS09300 PF00698 Acyl transferase domain VCLMA_RS09305 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VCLMA_RS09305 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VCLMA_RS09310 PF02504 Fatty acid synthesis protein VCLMA_RS09315 PF01783 Ribosomal L32p protein family VCLMA_RS09320 PF02620 Large ribosomal RNA subunit accumulation protein YceD VCLMA_RS09325 PF02545 Maf-like protein VCLMA_RS09330 PF01479 S4 domain VCLMA_RS09330 PF00849 RNA pseudouridylate synthase VCLMA_RS09340 PF10150 Ribonuclease E/G family VCLMA_RS09340 PF00575 S1 RNA binding domain VCLMA_RS09340 PF12111 Polyribonucleotide phosphorylase C terminal VCLMA_RS09345 PF01740 STAS domain VCLMA_RS09345 PF00916 Sulfate permease family VCLMA_RS09355 PF00171 Aldehyde dehydrogenase family VCLMA_RS09355 PF00465 Iron-containing alcohol dehydrogenase VCLMA_RS09360 PF01914 MarC family integral membrane protein VCLMA_RS09365 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCLMA_RS09365 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCLMA_RS09370 PF03553 Na+/H+ antiporter family VCLMA_RS09380 PF04245 37-kD nucleoid-associated bacterial protein VCLMA_RS09385 PF07208 Protein of unknown function (DUF1414) VCLMA_RS09390 PF00884 Sulfatase VCLMA_RS09390 PF11893 Domain of unknown function (DUF3413) VCLMA_RS09405 PF00850 Histone deacetylase domain VCLMA_RS09410 PF01751 Toprim domain VCLMA_RS09410 PF01131 DNA topoisomerase VCLMA_RS09415 PF00462 Glutaredoxin VCLMA_RS09420 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VCLMA_RS09420 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VCLMA_RS09435 PF04333 MlaA lipoprotein VCLMA_RS09445 PF03918 Cytochrome C biogenesis protein VCLMA_RS09450 PF08534 Redoxin VCLMA_RS09455 PF01578 Cytochrome C assembly protein VCLMA_RS09455 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VCLMA_RS09460 PF03100 CcmE VCLMA_RS09465 PF04995 Heme exporter protein D (CcmD) VCLMA_RS09470 PF01578 Cytochrome C assembly protein VCLMA_RS09475 PF03379 CcmB protein VCLMA_RS09480 PF00005 ABC transporter VCLMA_RS09490 PF01584 CheW-like domain VCLMA_RS09500 PF13614 AAA domain VCLMA_RS09505 PF01339 CheB methylesterase VCLMA_RS09505 PF00072 Response regulator receiver domain VCLMA_RS09510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS09510 PF01627 Hpt domain VCLMA_RS09510 PF01584 CheW-like domain VCLMA_RS09510 PF00072 Response regulator receiver domain VCLMA_RS09510 PF02895 Signal transducing histidine kinase, homodimeric domain VCLMA_RS09515 PF04344 Chemotaxis phosphatase, CheZ VCLMA_RS09520 PF00072 Response regulator receiver domain VCLMA_RS09525 PF04542 Sigma-70 region 2 VCLMA_RS09525 PF04539 Sigma-70 region 3 VCLMA_RS09525 PF04545 Sigma-70, region 4 VCLMA_RS09530 PF10609 NUBPL iron-transfer P-loop NTPase VCLMA_RS09535 PF00448 SRP54-type protein, GTPase domain VCLMA_RS09540 PF00771 FHIPEP family VCLMA_RS09545 PF00300 Histidine phosphatase superfamily (branch 1) VCLMA_RS09550 PF05193 Peptidase M16 inactive domain VCLMA_RS09550 PF00675 Insulinase (Peptidase family M16) VCLMA_RS09560 PF03485 Arginyl tRNA synthetase N terminal domain VCLMA_RS09560 PF05746 DALR anticodon binding domain VCLMA_RS09560 PF00750 tRNA synthetases class I (R) VCLMA_RS09575 PF07670 Nucleoside recognition VCLMA_RS09575 PF07664 Ferrous iron transport protein B C terminus VCLMA_RS09575 PF02421 Ferrous iron transport protein B VCLMA_RS09580 PF04023 FeoA domain VCLMA_RS09585 PF12833 Helix-turn-helix domain VCLMA_RS09585 PF02311 AraC-like ligand binding domain VCLMA_RS09590 PF01297 Zinc-uptake complex component A periplasmic VCLMA_RS09595 PF00005 ABC transporter VCLMA_RS09600 PF00950 ABC 3 transport family VCLMA_RS09605 PF00549 CoA-ligase VCLMA_RS09605 PF02629 CoA binding domain VCLMA_RS09610 PF08442 ATP-grasp domain VCLMA_RS09610 PF00549 CoA-ligase VCLMA_RS09615 PF00364 Biotin-requiring enzyme VCLMA_RS09615 PF02817 e3 binding domain VCLMA_RS09615 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VCLMA_RS09620 PF02779 Transketolase, pyrimidine binding domain VCLMA_RS09620 PF00676 Dehydrogenase E1 component VCLMA_RS09620 PF16870 2-oxoglutarate dehydrogenase C-terminal VCLMA_RS09620 PF16078 2-oxoglutarate dehydrogenase N-terminus VCLMA_RS09625 PF13085 2Fe-2S iron-sulfur cluster binding domain VCLMA_RS09630 PF02910 Fumarate reductase flavoprotein C-term VCLMA_RS09630 PF00890 FAD binding domain VCLMA_RS09635 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VCLMA_RS09640 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VCLMA_RS09645 PF00285 Citrate synthase, C-terminal domain VCLMA_RS09650 PF01784 NIF3 (NGG1p interacting factor 3) VCLMA_RS09660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCLMA_RS09660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCLMA_RS09660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCLMA_RS09660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCLMA_RS09665 PF17206 SeqA protein N-terminal domain VCLMA_RS09665 PF03925 SeqA protein C-terminal domain VCLMA_RS09670 PF12697 Alpha/beta hydrolase family VCLMA_RS09680 PF00258 Flavodoxin VCLMA_RS09685 PF04172 LrgB-like family VCLMA_RS09690 PF03788 LrgA family VCLMA_RS09695 PF03466 LysR substrate binding domain VCLMA_RS09695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS09705 PF01475 Ferric uptake regulator family VCLMA_RS09710 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCLMA_RS09710 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCLMA_RS09715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCLMA_RS09715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCLMA_RS09715 PF11890 Domain of unknown function (DUF3410) VCLMA_RS09720 PF00109 Beta-ketoacyl synthase, N-terminal domain VCLMA_RS09720 PF02801 Beta-ketoacyl synthase, C-terminal domain VCLMA_RS09725 PF01266 FAD dependent oxidoreductase VCLMA_RS09725 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VCLMA_RS09730 PF03358 NADPH-dependent FMN reductase VCLMA_RS09735 PF08891 YfcL protein VCLMA_RS09740 PF04315 Elongation factor P hydroxylase VCLMA_RS09745 PF03458 UPF0126 domain VCLMA_RS09750 PF01264 Chorismate synthase VCLMA_RS09760 PF05175 Methyltransferase small domain VCLMA_RS09765 PF01713 Smr domain VCLMA_RS09770 PF01312 FlhB HrpN YscU SpaS Family VCLMA_RS09775 PF01311 Bacterial export proteins, family 1 VCLMA_RS09780 PF01313 Bacterial export proteins, family 3 VCLMA_RS09785 PF00813 FliP family VCLMA_RS09790 PF04347 Flagellar biosynthesis protein, FliO VCLMA_RS09795 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VCLMA_RS09800 PF02154 Flagellar motor switch protein FliM VCLMA_RS09800 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VCLMA_RS09805 PF03748 Flagellar basal body-associated protein FliL VCLMA_RS09820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCLMA_RS09820 PF18269 T3SS EscN ATPase C-terminal domain VCLMA_RS09825 PF02108 Flagellar assembly protein FliH VCLMA_RS09830 PF01706 FliG C-terminal domain VCLMA_RS09830 PF14842 FliG N-terminal domain VCLMA_RS09830 PF14841 FliG middle domain VCLMA_RS09835 PF08345 Flagellar M-ring protein C-terminal VCLMA_RS09835 PF01514 Secretory protein of YscJ/FliF family VCLMA_RS09840 PF02049 Flagellar hook-basal body complex protein FliE VCLMA_RS09845 PF02954 Bacterial regulatory protein, Fis family VCLMA_RS09845 PF00072 Response regulator receiver domain VCLMA_RS09845 PF00158 Sigma-54 interaction domain VCLMA_RS09850 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS09850 PF13188 PAS domain VCLMA_RS09850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS09855 PF00158 Sigma-54 interaction domain VCLMA_RS09855 PF06490 Flagellar regulatory protein FleQ VCLMA_RS09855 PF02954 Bacterial regulatory protein, Fis family VCLMA_RS09860 PF02561 Flagellar protein FliS VCLMA_RS09870 PF07195 Flagellar hook-associated protein 2 C-terminus VCLMA_RS09870 PF07196 Flagellin hook IN motif VCLMA_RS09870 PF02465 Flagellar hook-associated protein 2 N-terminus VCLMA_RS09875 PF03646 FlaG protein VCLMA_RS09885 PF00669 Bacterial flagellin N-terminal helical region VCLMA_RS09885 PF00700 Bacterial flagellin C-terminal helical region VCLMA_RS09885 PF07196 Flagellin hook IN motif VCLMA_RS09890 PF00700 Bacterial flagellin C-terminal helical region VCLMA_RS09890 PF00669 Bacterial flagellin N-terminal helical region VCLMA_RS09890 PF07196 Flagellin hook IN motif VCLMA_RS09895 PF04261 Dyp-type peroxidase family VCLMA_RS09900 PF11143 Protein of unknown function (DUF2919) VCLMA_RS09915 PF03960 ArsC family VCLMA_RS09920 PF07687 Peptidase dimerisation domain VCLMA_RS09920 PF01546 Peptidase family M20/M25/M40 VCLMA_RS09925 PF02557 D-alanyl-D-alanine carboxypeptidase VCLMA_RS09935 PF06804 NlpB/DapX lipoprotein VCLMA_RS09940 PF00701 Dihydrodipicolinate synthetase family VCLMA_RS09950 PF00578 AhpC/TSA family VCLMA_RS09955 PF02743 Cache domain VCLMA_RS09955 PF00672 HAMP domain VCLMA_RS09955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS09960 PF01594 AI-2E family transporter VCLMA_RS09970 PF13181 Tetratricopeptide repeat VCLMA_RS09970 PF01435 Peptidase family M48 VCLMA_RS09975 PF03960 ArsC family VCLMA_RS09980 PF03358 NADPH-dependent FMN reductase VCLMA_RS09995 PF00860 Permease family VCLMA_RS10000 PF04073 Aminoacyl-tRNA editing domain VCLMA_RS10005 PF02872 5'-nucleotidase, C-terminal domain VCLMA_RS10005 PF00149 Calcineurin-like phosphoesterase VCLMA_RS10010 PF00793 DAHP synthetase I family VCLMA_RS10015 PF13369 Transglutaminase-like superfamily VCLMA_RS10020 PF04247 Invasion gene expression up-regulator, SirB VCLMA_RS10030 PF00472 RF-1 domain VCLMA_RS10030 PF03462 PCRF domain VCLMA_RS10035 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VCLMA_RS10035 PF01488 Shikimate / quinate 5-dehydrogenase VCLMA_RS10035 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VCLMA_RS10040 PF03550 Outer membrane lipoprotein LolB VCLMA_RS10045 PF08544 GHMP kinases C terminal VCLMA_RS10045 PF00288 GHMP kinases N terminal domain VCLMA_RS10050 PF14572 Phosphoribosyl synthetase-associated domain VCLMA_RS10050 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VCLMA_RS10055 PF01195 Peptidyl-tRNA hydrolase VCLMA_RS10060 PF06071 Protein of unknown function (DUF933) VCLMA_RS10060 PF01926 50S ribosome-binding GTPase VCLMA_RS10145 PF00700 Bacterial flagellin C-terminal helical region VCLMA_RS10145 PF07196 Flagellin hook IN motif VCLMA_RS10145 PF00669 Bacterial flagellin N-terminal helical region VCLMA_RS10150 PF07196 Flagellin hook IN motif VCLMA_RS10150 PF00700 Bacterial flagellin C-terminal helical region VCLMA_RS10150 PF00669 Bacterial flagellin N-terminal helical region VCLMA_RS10165 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCLMA_RS10165 PF07196 Flagellin hook IN motif VCLMA_RS10170 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VCLMA_RS10170 PF10135 Rod binding protein VCLMA_RS10175 PF02119 Flagellar P-ring protein VCLMA_RS10180 PF02107 Flagellar L-ring protein VCLMA_RS10185 PF00460 Flagella basal body rod protein VCLMA_RS10185 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCLMA_RS10190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCLMA_RS10190 PF00460 Flagella basal body rod protein VCLMA_RS10195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCLMA_RS10195 PF00460 Flagella basal body rod protein VCLMA_RS10195 PF07559 Flagellar basal body protein FlaE VCLMA_RS10200 PF13861 FlgD Tudor-like domain VCLMA_RS10200 PF03963 Flagellar hook capping protein - N-terminal region VCLMA_RS10200 PF13860 FlgD Ig-like domain VCLMA_RS10205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCLMA_RS10205 PF00460 Flagella basal body rod protein VCLMA_RS10210 PF00460 Flagella basal body rod protein VCLMA_RS10215 PF01739 CheR methyltransferase, SAM binding domain VCLMA_RS10215 PF03705 CheR methyltransferase, all-alpha domain VCLMA_RS10220 PF01584 CheW-like domain VCLMA_RS10220 PF00072 Response regulator receiver domain VCLMA_RS10255 PF00501 AMP-binding enzyme VCLMA_RS10255 PF00668 Condensation domain VCLMA_RS10255 PF08242 Methyltransferase domain VCLMA_RS10255 PF00550 Phosphopantetheine attachment site VCLMA_RS10260 PF08021 Siderophore-interacting FAD-binding domain VCLMA_RS10260 PF04954 Siderophore-interacting protein VCLMA_RS10265 PF07715 TonB-dependent Receptor Plug Domain VCLMA_RS10275 PF01389 OmpA-like transmembrane domain VCLMA_RS10275 PF00691 OmpA family VCLMA_RS10280 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCLMA_RS10285 PF00403 Heavy-metal-associated domain VCLMA_RS10295 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VCLMA_RS10295 PF00728 Glycosyl hydrolase family 20, catalytic domain VCLMA_RS10295 PF02838 Glycosyl hydrolase family 20, domain 2 VCLMA_RS10295 PF03173 Putative carbohydrate binding domain VCLMA_RS10300 PF01963 TraB family VCLMA_RS10315 PF01713 Smr domain VCLMA_RS10320 PF00849 RNA pseudouridylate synthase VCLMA_RS10320 PF01479 S4 domain VCLMA_RS10325 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS10335 PF00586 AIR synthase related protein, N-terminal domain VCLMA_RS10335 PF02769 AIR synthase related protein, C-terminal domain VCLMA_RS10340 PF00551 Formyl transferase VCLMA_RS10345 PF13230 Glutamine amidotransferases class-II VCLMA_RS10350 PF13580 SIS domain VCLMA_RS10355 PF09317 Domain of unknown function (DUF1974) VCLMA_RS10355 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VCLMA_RS10355 PF02770 Acyl-CoA dehydrogenase, middle domain VCLMA_RS10355 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VCLMA_RS10365 PF00929 Exonuclease VCLMA_RS10370 PF00075 RNase H VCLMA_RS10375 PF08241 Methyltransferase domain VCLMA_RS10380 PF00753 Metallo-beta-lactamase superfamily VCLMA_RS10380 PF16123 Hydroxyacylglutathione hydrolase C-terminus VCLMA_RS10385 PF01476 LysM domain VCLMA_RS10385 PF01464 Transglycosylase SLT domain VCLMA_RS10390 PF03372 Endonuclease/Exonuclease/phosphatase family VCLMA_RS10395 PF00543 Nitrogen regulatory protein P-II VCLMA_RS10400 PF05870 Phenolic acid decarboxylase (PAD) VCLMA_RS10405 PF00034 Cytochrome c VCLMA_RS10410 PF11734 TilS substrate C-terminal domain VCLMA_RS10410 PF09179 TilS substrate binding domain VCLMA_RS10410 PF01171 PP-loop family VCLMA_RS10415 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VCLMA_RS10420 PF01336 OB-fold nucleic acid binding domain VCLMA_RS10420 PF02811 PHP domain VCLMA_RS10420 PF14579 Helix-hairpin-helix motif VCLMA_RS10420 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VCLMA_RS10420 PF07733 Bacterial DNA polymerase III alpha NTPase domain VCLMA_RS10430 PF02684 Lipid-A-disaccharide synthetase VCLMA_RS10435 PF00132 Bacterial transferase hexapeptide (six repeats) VCLMA_RS10435 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VCLMA_RS10440 PF07977 FabA-like domain VCLMA_RS10445 PF00132 Bacterial transferase hexapeptide (six repeats) VCLMA_RS10445 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VCLMA_RS10450 PF03938 Outer membrane protein (OmpH-like) VCLMA_RS10455 PF01103 Surface antigen VCLMA_RS10455 PF07244 Surface antigen variable number repeat VCLMA_RS10460 PF02163 Peptidase family M50 VCLMA_RS10460 PF17820 PDZ domain VCLMA_RS10465 PF13288 DXP reductoisomerase C-terminal domain VCLMA_RS10465 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VCLMA_RS10465 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VCLMA_RS10475 PF01255 Putative undecaprenyl diphosphate synthase VCLMA_RS10480 PF01765 Ribosome recycling factor VCLMA_RS10485 PF00696 Amino acid kinase family VCLMA_RS10490 PF00889 Elongation factor TS VCLMA_RS10500 PF00557 Metallopeptidase family M24 VCLMA_RS10505 PF01909 Nucleotidyltransferase domain VCLMA_RS10505 PF08335 GlnD PII-uridylyltransferase VCLMA_RS10505 PF01966 HD domain VCLMA_RS10510 PF11944 Protein of unknown function (DUF3461) VCLMA_RS10515 PF04608 Phosphatidylglycerophosphatase A VCLMA_RS10520 PF00586 AIR synthase related protein, N-terminal domain VCLMA_RS10520 PF02769 AIR synthase related protein, C-terminal domain VCLMA_RS10525 PF01029 NusB family VCLMA_RS10530 PF00885 6,7-dimethyl-8-ribityllumazine synthase VCLMA_RS10535 PF00925 GTP cyclohydrolase II VCLMA_RS10535 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VCLMA_RS10540 PF00677 Lumazine binding domain VCLMA_RS10545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCLMA_RS10545 PF01872 RibD C-terminal domain VCLMA_RS10550 PF03477 ATP cone domain VCLMA_RS10555 PF00171 Aldehyde dehydrogenase family VCLMA_RS10560 PF01472 PUA domain VCLMA_RS10560 PF00696 Amino acid kinase family VCLMA_RS10565 PF07417 Sigma factor-binding transcriptional regulator Crl VCLMA_RS10570 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VCLMA_RS10575 PF00156 Phosphoribosyl transferase domain VCLMA_RS10580 PF00860 Permease family VCLMA_RS10585 PF07687 Peptidase dimerisation domain VCLMA_RS10585 PF01546 Peptidase family M20/M25/M40 VCLMA_RS10590 PF18030 RimK PreATP-grasp domain VCLMA_RS10590 PF08443 RimK-like ATP-grasp domain VCLMA_RS10595 PF08443 RimK-like ATP-grasp domain VCLMA_RS10595 PF18030 RimK PreATP-grasp domain VCLMA_RS10605 PF00209 Sodium:neurotransmitter symporter family VCLMA_RS10610 PF17158 Membrane-associated sensor, integral membrane domain VCLMA_RS10610 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS10620 PF00817 impB/mucB/samB family VCLMA_RS10620 PF11798 IMS family HHH motif VCLMA_RS10630 PF02424 ApbE family VCLMA_RS10635 PF00970 Oxidoreductase FAD-binding domain VCLMA_RS10635 PF00111 2Fe-2S iron-sulfur cluster binding domain VCLMA_RS10635 PF00175 Oxidoreductase NAD-binding domain VCLMA_RS10640 PF02508 Rnf-Nqr subunit, membrane protein VCLMA_RS10645 PF02508 Rnf-Nqr subunit, membrane protein VCLMA_RS10650 PF04205 FMN-binding domain VCLMA_RS10655 PF03116 NQR2, RnfD, RnfE family VCLMA_RS10660 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VCLMA_RS10660 PF11973 NQRA C-terminal domain VCLMA_RS10665 PF01722 BolA-like protein VCLMA_RS10670 PF05175 Methyltransferase small domain VCLMA_RS10680 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VCLMA_RS10685 PF07690 Major Facilitator Superfamily VCLMA_RS10705 PF03502 Nucleoside-specific channel-forming protein, Tsx VCLMA_RS10710 PF02558 Ketopantoate reductase PanE/ApbA VCLMA_RS10710 PF08546 Ketopantoate reductase PanE/ApbA C terminal VCLMA_RS10720 PF00266 Aminotransferase class-V VCLMA_RS10725 PF02657 Fe-S metabolism associated domain VCLMA_RS10730 PF00899 ThiF family VCLMA_RS10735 PF06725 3D domain VCLMA_RS10735 PF03562 MltA specific insert domain VCLMA_RS10745 PF00696 Amino acid kinase family VCLMA_RS10745 PF00583 Acetyltransferase (GNAT) family VCLMA_RS10760 PF13538 UvrD-like helicase C-terminal domain VCLMA_RS10765 PF12705 PD-(D/E)XK nuclease superfamily VCLMA_RS10765 PF00580 UvrD/REP helicase N-terminal domain VCLMA_RS10765 PF13361 UvrD-like helicase C-terminal domain VCLMA_RS10770 PF17946 RecC C-terminal domain VCLMA_RS10785 PF07130 YebG protein VCLMA_RS10790 PF14602 Hexapeptide repeat of succinyl-transferase VCLMA_RS10790 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VCLMA_RS10800 PF00583 Acetyltransferase (GNAT) family VCLMA_RS10805 PF02080 TrkA-C domain VCLMA_RS10805 PF18030 RimK PreATP-grasp domain VCLMA_RS10805 PF08443 RimK-like ATP-grasp domain VCLMA_RS10810 PF01544 CorA-like Mg2+ transporter protein VCLMA_RS10820 PF01588 Putative tRNA binding domain VCLMA_RS10825 PF00356 Bacterial regulatory proteins, lacI family VCLMA_RS10830 PF02929 Beta galactosidase small chain VCLMA_RS10830 PF02837 Glycosyl hydrolases family 2, sugar binding domain VCLMA_RS10830 PF00703 Glycosyl hydrolases family 2 VCLMA_RS10830 PF16353 Domain of unknown function(DUF4981) VCLMA_RS10830 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VCLMA_RS10840 PF00072 Response regulator receiver domain VCLMA_RS10845 PF00501 AMP-binding enzyme VCLMA_RS10850 PF03144 Elongation factor Tu domain 2 VCLMA_RS10850 PF00009 Elongation factor Tu GTP binding domain VCLMA_RS10850 PF00679 Elongation factor G C-terminus VCLMA_RS10850 PF03764 Elongation factor G, domain IV VCLMA_RS10850 PF14492 Elongation Factor G, domain II VCLMA_RS10855 PF18073 Rubredoxin metal binding domain VCLMA_RS10865 PF18429 Domain of unknown function (DUF5609) VCLMA_RS10875 PF01048 Phosphorylase superfamily VCLMA_RS10880 PF01676 Metalloenzyme superfamily VCLMA_RS10885 PF02885 Glycosyl transferase family, helical bundle domain VCLMA_RS10885 PF00591 Glycosyl transferase family, a/b domain VCLMA_RS10885 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VCLMA_RS10890 PF01791 DeoC/LacD family aldolase VCLMA_RS10900 PF07670 Nucleoside recognition VCLMA_RS10900 PF07662 Na+ dependent nucleoside transporter C-terminus VCLMA_RS10900 PF01773 Na+ dependent nucleoside transporter N-terminus VCLMA_RS10905 PF01026 TatD related DNase VCLMA_RS10910 PF03883 Peroxide stress protein YaaA VCLMA_RS10915 PF01235 Sodium:alanine symporter family VCLMA_RS10930 PF03167 Uracil DNA glycosylase superfamily VCLMA_RS10935 PF01261 Xylose isomerase-like TIM barrel VCLMA_RS10940 PF01228 Glycine radical VCLMA_RS10950 PF00288 GHMP kinases N terminal domain VCLMA_RS10950 PF08544 GHMP kinases C terminal VCLMA_RS10955 PF03447 Homoserine dehydrogenase, NAD binding domain VCLMA_RS10955 PF01842 ACT domain VCLMA_RS10955 PF00696 Amino acid kinase family VCLMA_RS10955 PF13840 ACT domain VCLMA_RS10955 PF00742 Homoserine dehydrogenase VCLMA_RS10965 PF03737 Aldolase/RraA VCLMA_RS10975 PF00486 Transcriptional regulatory protein, C terminal VCLMA_RS10975 PF00072 Response regulator receiver domain VCLMA_RS10980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS10980 PF00072 Response regulator receiver domain VCLMA_RS10980 PF01627 Hpt domain VCLMA_RS10980 PF00989 PAS fold VCLMA_RS10980 PF18415 Histidine kinase receptor ArcB trans-membrane domain VCLMA_RS10980 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS10985 PF01590 GAF domain VCLMA_RS10985 PF00563 EAL domain VCLMA_RS10985 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS10985 PF00360 Phytochrome region VCLMA_RS10990 PF16199 Radical_SAM C-terminal domain VCLMA_RS10990 PF04055 Radical SAM superfamily VCLMA_RS10995 PF01645 Conserved region in glutamate synthase VCLMA_RS10995 PF04898 Glutamate synthase central domain VCLMA_RS10995 PF00310 Glutamine amidotransferases class-II VCLMA_RS10995 PF01493 GXGXG motif VCLMA_RS11000 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCLMA_RS11000 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VCLMA_RS11005 PF01493 GXGXG motif VCLMA_RS11005 PF01645 Conserved region in glutamate synthase VCLMA_RS11005 PF00310 Glutamine amidotransferases class-II VCLMA_RS11005 PF04898 Glutamate synthase central domain VCLMA_RS11010 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VCLMA_RS11010 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCLMA_RS11020 PF01048 Phosphorylase superfamily VCLMA_RS11030 PF01497 Periplasmic binding protein VCLMA_RS11035 PF03458 UPF0126 domain VCLMA_RS11040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS11040 PF03466 LysR substrate binding domain VCLMA_RS11055 PF02142 MGS-like domain VCLMA_RS11055 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCLMA_RS11055 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VCLMA_RS11060 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VCLMA_RS11060 PF00117 Glutamine amidotransferase class-I VCLMA_RS11070 PF01113 Dihydrodipicolinate reductase, N-terminus VCLMA_RS11070 PF05173 Dihydrodipicolinate reductase, C-terminus VCLMA_RS11075 PF00293 NUDIX domain VCLMA_RS11085 PF01043 SecA preprotein cross-linking domain VCLMA_RS11085 PF02810 SEC-C motif VCLMA_RS11085 PF07516 SecA Wing and Scaffold domain VCLMA_RS11085 PF07517 SecA DEAD-like domain VCLMA_RS11095 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VCLMA_RS11100 PF00091 Tubulin/FtsZ family, GTPase domain VCLMA_RS11100 PF12327 FtsZ family, C-terminal domain VCLMA_RS11105 PF02491 SHS2 domain inserted in FTSA VCLMA_RS11110 PF03799 Cell division protein FtsQ VCLMA_RS11110 PF08478 POTRA domain, FtsQ-type VCLMA_RS11115 PF08245 Mur ligase middle domain VCLMA_RS11115 PF02875 Mur ligase family, glutamate ligase domain VCLMA_RS11115 PF01225 Mur ligase family, catalytic domain VCLMA_RS11120 PF04101 Glycosyltransferase family 28 C-terminal domain VCLMA_RS11120 PF03033 Glycosyltransferase family 28 N-terminal domain VCLMA_RS11125 PF01098 Cell cycle protein VCLMA_RS11130 PF02875 Mur ligase family, glutamate ligase domain VCLMA_RS11130 PF08245 Mur ligase middle domain VCLMA_RS11135 PF00953 Glycosyl transferase family 4 VCLMA_RS11135 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VCLMA_RS11140 PF01225 Mur ligase family, catalytic domain VCLMA_RS11140 PF08245 Mur ligase middle domain VCLMA_RS11140 PF02875 Mur ligase family, glutamate ligase domain VCLMA_RS11145 PF02875 Mur ligase family, glutamate ligase domain VCLMA_RS11145 PF08245 Mur ligase middle domain VCLMA_RS11145 PF01225 Mur ligase family, catalytic domain VCLMA_RS11150 PF00905 Penicillin binding protein transpeptidase domain VCLMA_RS11150 PF03717 Penicillin-binding Protein dimerisation domain VCLMA_RS11155 PF04999 Cell division protein FtsL VCLMA_RS11160 PF01795 MraW methylase family VCLMA_RS11165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCLMA_RS11165 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCLMA_RS11175 PF00456 Transketolase, thiamine diphosphate binding domain VCLMA_RS11175 PF17831 Pyruvate dehydrogenase E1 component middle domain VCLMA_RS11180 PF00392 Bacterial regulatory proteins, gntR family VCLMA_RS11180 PF07729 FCD domain VCLMA_RS11185 PF02872 5'-nucleotidase, C-terminal domain VCLMA_RS11185 PF00149 Calcineurin-like phosphoesterase VCLMA_RS11190 PF17768 RecJ OB domain VCLMA_RS11190 PF02272 DHHA1 domain VCLMA_RS11190 PF01368 DHH family VCLMA_RS11195 PF10411 Disulfide bond isomerase protein N-terminus VCLMA_RS11195 PF13098 Thioredoxin-like domain VCLMA_RS11200 PF00589 Phage integrase family VCLMA_RS11200 PF02899 Phage integrase, N-terminal SAM-like domain VCLMA_RS11205 PF00258 Flavodoxin VCLMA_RS11210 PF01510 N-acetylmuramoyl-L-alanine amidase VCLMA_RS11215 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VCLMA_RS11215 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VCLMA_RS11220 PF00437 Type II/IV secretion system protein VCLMA_RS11220 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VCLMA_RS11225 PF00482 Type II secretion system (T2SS), protein F VCLMA_RS11230 PF06750 Bacterial Peptidase A24 N-terminal domain VCLMA_RS11230 PF01478 Type IV leader peptidase family VCLMA_RS11235 PF01121 Dephospho-CoA kinase VCLMA_RS11240 PF07072 Cell division protein VCLMA_RS11250 PF03989 DNA gyrase C-terminal domain, beta-propeller VCLMA_RS11250 PF00521 DNA gyrase/topoisomerase IV, subunit A VCLMA_RS11255 PF01751 Toprim domain VCLMA_RS11255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS11255 PF00986 DNA gyrase B subunit, carboxyl terminus VCLMA_RS11255 PF00204 DNA gyrase B VCLMA_RS11260 PF05728 Uncharacterised protein family (UPF0227) VCLMA_RS11265 PF00149 Calcineurin-like phosphoesterase VCLMA_RS11270 PF06853 Protein of unknown function (DUF1249) VCLMA_RS11275 PF00293 NUDIX domain VCLMA_RS11280 PF02321 Outer membrane efflux protein VCLMA_RS11285 PF00294 pfkB family carbohydrate kinase VCLMA_RS11285 PF01467 Cytidylyltransferase-like VCLMA_RS11290 PF08335 GlnD PII-uridylyltransferase VCLMA_RS11290 PF03710 Glutamate-ammonia ligase adenylyltransferase VCLMA_RS11295 PF02743 Cache domain VCLMA_RS11295 PF00672 HAMP domain VCLMA_RS11295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCLMA_RS11305 PF01865 Protein of unknown function DUF47 VCLMA_RS11310 PF01384 Phosphate transporter family VCLMA_RS11315 PF08239 Bacterial SH3 domain VCLMA_RS11325 PF13401 AAA domain VCLMA_RS11325 PF01471 Putative peptidoglycan binding domain VCLMA_RS11330 PF01743 Poly A polymerase head domain VCLMA_RS11330 PF12627 Probable RNA and SrmB- binding site of polymerase A VCLMA_RS11330 PF01966 HD domain VCLMA_RS11335 PF03952 Enolase, N-terminal domain VCLMA_RS11335 PF00113 Enolase, C-terminal TIM barrel domain VCLMA_RS11340 PF06418 CTP synthase N-terminus VCLMA_RS11340 PF00117 Glutamine amidotransferase class-I VCLMA_RS11345 PF03819 MazG nucleotide pyrophosphohydrolase domain VCLMA_RS11350 PF02824 TGS domain VCLMA_RS11350 PF13291 ACT domain VCLMA_RS11350 PF04607 Region found in RelA / SpoT proteins VCLMA_RS11355 PF05958 tRNA (Uracil-5-)-methyltransferase VCLMA_RS11355 PF01938 TRAM domain VCLMA_RS11360 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS11360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VCLMA_RS11360 PF00072 Response regulator receiver domain VCLMA_RS11360 PF00672 HAMP domain VCLMA_RS11360 PF01627 Hpt domain VCLMA_RS11360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS11365 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS11365 PF00563 EAL domain VCLMA_RS11380 PF01648 4'-phosphopantetheinyl transferase superfamily VCLMA_RS11385 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VCLMA_RS11390 PF11967 Recombination protein O N terminal VCLMA_RS11390 PF02565 Recombination protein O C terminal VCLMA_RS11395 PF01926 50S ribosome-binding GTPase VCLMA_RS11395 PF07650 KH domain VCLMA_RS11400 PF00035 Double-stranded RNA binding motif VCLMA_RS11400 PF14622 Ribonuclease-III-like VCLMA_RS11405 PF10502 Signal peptidase, peptidase S26 VCLMA_RS11410 PF00679 Elongation factor G C-terminus VCLMA_RS11410 PF06421 GTP-binding protein LepA C-terminus VCLMA_RS11410 PF03144 Elongation factor Tu domain 2 VCLMA_RS11410 PF00009 Elongation factor Tu GTP binding domain VCLMA_RS11420 PF03888 MucB/RseB N-terminal domain VCLMA_RS11420 PF17188 MucB/RseB C-terminal domain VCLMA_RS11425 PF03873 Anti sigma-E protein RseA, C-terminal domain VCLMA_RS11425 PF03872 Anti sigma-E protein RseA, N-terminal domain VCLMA_RS11430 PF08281 Sigma-70, region 4 VCLMA_RS11430 PF04542 Sigma-70 region 2 VCLMA_RS11440 PF02910 Fumarate reductase flavoprotein C-term VCLMA_RS11440 PF00890 FAD binding domain VCLMA_RS11450 PF03937 Flavinator of succinate dehydrogenase VCLMA_RS11465 PF01494 FAD binding domain VCLMA_RS11470 PF01494 FAD binding domain VCLMA_RS11475 PF03695 Uncharacterised protein family (UPF0149) VCLMA_RS11480 PF05164 Cell division protein ZapA VCLMA_RS11485 PF01812 5-formyltetrahydrofolate cyclo-ligase family VCLMA_RS11490 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VCLMA_RS11495 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCLMA_RS11495 PF01842 ACT domain VCLMA_RS11495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCLMA_RS11500 PF10369 Small subunit of acetolactate synthase VCLMA_RS11505 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCLMA_RS11505 PF00205 Thiamine pyrophosphate enzyme, central domain VCLMA_RS11505 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCLMA_RS11510 PF00501 AMP-binding enzyme VCLMA_RS11515 PF03466 LysR substrate binding domain VCLMA_RS11515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS11525 PF01569 PAP2 superfamily VCLMA_RS11535 PF08502 LeuA allosteric (dimerisation) domain VCLMA_RS11535 PF00682 HMGL-like VCLMA_RS11540 PF00180 Isocitrate/isopropylmalate dehydrogenase VCLMA_RS11545 PF00330 Aconitase family (aconitate hydratase) VCLMA_RS11550 PF00694 Aconitase C-terminal domain VCLMA_RS11605 PF00072 Response regulator receiver domain VCLMA_RS11620 PF03739 Lipopolysaccharide export system permease LptF/LptG VCLMA_RS11625 PF03739 Lipopolysaccharide export system permease LptF/LptG VCLMA_RS11630 PF02789 Cytosol aminopeptidase family, N-terminal domain VCLMA_RS11630 PF00883 Cytosol aminopeptidase family, catalytic domain VCLMA_RS11635 PF04364 DNA polymerase III chi subunit, HolC VCLMA_RS11640 PF10458 Valyl tRNA synthetase tRNA binding arm VCLMA_RS11640 PF00133 tRNA synthetases class I (I, L, M and V) VCLMA_RS11640 PF08264 Anticodon-binding domain of tRNA VCLMA_RS11645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCLMA_RS11645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCLMA_RS11650 PF00849 RNA pseudouridylate synthase VCLMA_RS11655 PF00271 Helicase conserved C-terminal domain VCLMA_RS11655 PF12137 RNA polymerase recycling family C-terminal VCLMA_RS11655 PF00176 SNF2 family N-terminal domain VCLMA_RS11655 PF18337 RapA N-terminal Tudor like domain VCLMA_RS11655 PF18339 RapA N-terminal Tudor like domain 1 VCLMA_RS11670 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VCLMA_RS11670 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VCLMA_RS11675 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VCLMA_RS11675 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VCLMA_RS11680 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VCLMA_RS11680 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VCLMA_RS11685 PF01042 Endoribonuclease L-PSP VCLMA_RS11690 PF01553 Acyltransferase VCLMA_RS11695 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VCLMA_RS11700 PF01722 BolA-like protein VCLMA_RS11710 PF05494 MlaC protein VCLMA_RS11715 PF02470 MlaD protein VCLMA_RS11720 PF02405 Permease MlaE VCLMA_RS11725 PF00005 ABC transporter VCLMA_RS11735 PF01699 Sodium/calcium exchanger protein VCLMA_RS11740 PF01380 SIS domain VCLMA_RS11740 PF00571 CBS domain VCLMA_RS11755 PF03968 OstA-like protein VCLMA_RS11760 PF12399 Branched-chain amino acid ATP-binding cassette transporter VCLMA_RS11760 PF00005 ABC transporter VCLMA_RS11765 PF04552 Sigma-54, DNA binding domain VCLMA_RS11765 PF00309 Sigma-54 factor, Activator interacting domain (AID) VCLMA_RS11765 PF04963 Sigma-54 factor, core binding domain VCLMA_RS11770 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VCLMA_RS11775 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCLMA_RS11785 PF00381 PTS HPr component phosphorylation site VCLMA_RS11790 PF00571 CBS domain VCLMA_RS11790 PF01769 Divalent cation transporter VCLMA_RS11790 PF03448 MgtE intracellular N domain VCLMA_RS11795 PF01523 Putative modulator of DNA gyrase VCLMA_RS11800 PF04751 Protein of unknown function (DUF615) VCLMA_RS11805 PF00005 ABC transporter VCLMA_RS11810 PF00528 Binding-protein-dependent transport system inner membrane component VCLMA_RS11820 PF02441 Flavoprotein VCLMA_RS11825 PF02875 Mur ligase family, glutamate ligase domain VCLMA_RS11825 PF08245 Mur ligase middle domain VCLMA_RS11825 PF01225 Mur ligase family, catalytic domain VCLMA_RS11835 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VCLMA_RS11840 PF00719 Inorganic pyrophosphatase VCLMA_RS11845 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VCLMA_RS11850 PF04357 TamB, inner membrane protein subunit of TAM complex VCLMA_RS11855 PF07244 Surface antigen variable number repeat VCLMA_RS11855 PF17243 POTRA domain TamA domain 1 VCLMA_RS11855 PF01103 Surface antigen VCLMA_RS11860 PF01625 Peptide methionine sulfoxide reductase VCLMA_RS11865 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VCLMA_RS11870 PF10795 Protein of unknown function (DUF2607) VCLMA_RS11880 PF00005 ABC transporter VCLMA_RS11905 PF00009 Elongation factor Tu GTP binding domain VCLMA_RS11910 PF01507 Phosphoadenosine phosphosulfate reductase family VCLMA_RS11915 PF14824 Sirohaem biosynthesis protein central VCLMA_RS11915 PF10414 Sirohaem synthase dimerisation region VCLMA_RS11915 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCLMA_RS11920 PF00149 Calcineurin-like phosphoesterase VCLMA_RS11920 PF02872 5'-nucleotidase, C-terminal domain VCLMA_RS11930 PF00271 Helicase conserved C-terminal domain VCLMA_RS11930 PF00270 DEAD/DEAH box helicase VCLMA_RS11930 PF03880 DbpA RNA binding domain VCLMA_RS11935 PF13673 Acetyltransferase (GNAT) domain VCLMA_RS11940 PF00892 EamA-like transporter family VCLMA_RS11945 PF04225 Opacity-associated protein A LysM-like domain VCLMA_RS11945 PF08525 Opacity-associated protein A N-terminal motif VCLMA_RS11950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCLMA_RS11950 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VCLMA_RS11960 PF01196 Ribosomal protein L17 VCLMA_RS11965 PF01000 RNA polymerase Rpb3/RpoA insert domain VCLMA_RS11965 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VCLMA_RS11965 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VCLMA_RS11970 PF01479 S4 domain VCLMA_RS11970 PF00163 Ribosomal protein S4/S9 N-terminal domain VCLMA_RS11975 PF00411 Ribosomal protein S11 VCLMA_RS11980 PF00416 Ribosomal protein S13/S18 VCLMA_RS11985 PF00444 Ribosomal protein L36 VCLMA_RS11990 PF00344 SecY translocase VCLMA_RS11995 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VCLMA_RS12000 PF00327 Ribosomal protein L30p/L7e VCLMA_RS12005 PF03719 Ribosomal protein S5, C-terminal domain VCLMA_RS12005 PF00333 Ribosomal protein S5, N-terminal domain VCLMA_RS12010 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VCLMA_RS12015 PF00347 Ribosomal protein L6 VCLMA_RS12020 PF00410 Ribosomal protein S8 VCLMA_RS12025 PF00253 Ribosomal protein S14p/S29e VCLMA_RS12030 PF00673 ribosomal L5P family C-terminus VCLMA_RS12030 PF00281 Ribosomal protein L5 VCLMA_RS12035 PF00467 KOW motif VCLMA_RS12035 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VCLMA_RS12040 PF00238 Ribosomal protein L14p/L23e VCLMA_RS12045 PF00366 Ribosomal protein S17 VCLMA_RS12050 PF00831 Ribosomal L29 protein VCLMA_RS12055 PF00252 Ribosomal protein L16p/L10e VCLMA_RS12060 PF07650 KH domain VCLMA_RS12060 PF00189 Ribosomal protein S3, C-terminal domain VCLMA_RS12065 PF00237 Ribosomal protein L22p/L17e VCLMA_RS12070 PF00203 Ribosomal protein S19 VCLMA_RS12075 PF03947 Ribosomal Proteins L2, C-terminal domain VCLMA_RS12075 PF00181 Ribosomal Proteins L2, RNA binding domain VCLMA_RS12080 PF00276 Ribosomal protein L23 VCLMA_RS12085 PF00573 Ribosomal protein L4/L1 family VCLMA_RS12090 PF00297 Ribosomal protein L3 VCLMA_RS12095 PF00338 Ribosomal protein S10p/S20e VCLMA_RS12100 PF08032 RNA 2'-O ribose methyltransferase substrate binding VCLMA_RS12100 PF00588 SpoU rRNA Methylase family VCLMA_RS12105 PF00575 S1 RNA binding domain VCLMA_RS12105 PF17876 Cold shock domain VCLMA_RS12105 PF08461 Ribonuclease R winged-helix domain VCLMA_RS12105 PF08206 Ribonuclease B OB domain VCLMA_RS12105 PF00773 RNB domain VCLMA_RS12110 PF11893 Domain of unknown function (DUF3413) VCLMA_RS12110 PF00884 Sulfatase VCLMA_RS12115 PF08238 Sel1 repeat VCLMA_RS12120 PF00709 Adenylosuccinate synthetase VCLMA_RS12125 PF01112 Asparaginase VCLMA_RS12130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCLMA_RS12145 PF02525 Flavodoxin-like fold VCLMA_RS12150 PF00005 ABC transporter VCLMA_RS12150 PF12848 ABC transporter VCLMA_RS12160 PF00561 alpha/beta hydrolase fold VCLMA_RS12165 PF06794 Uncharacterised protein family (UPF0270) VCLMA_RS12170 PF00485 Phosphoribulokinase / Uridine kinase family VCLMA_RS12175 PF13545 Crp-like helix-turn-helix domain VCLMA_RS12175 PF00027 Cyclic nucleotide-binding domain VCLMA_RS12185 PF00171 Aldehyde dehydrogenase family VCLMA_RS12190 PF04958 Arginine N-succinyltransferase beta subunit VCLMA_RS12195 PF00202 Aminotransferase class-III VCLMA_RS12200 PF00117 Glutamine amidotransferase class-I VCLMA_RS12205 PF04055 Radical SAM superfamily VCLMA_RS12205 PF18693 TRAM domain VCLMA_RS12205 PF00919 Uncharacterized protein family UPF0004 VCLMA_RS12220 PF00579 tRNA synthetases class I (W and Y) VCLMA_RS12225 PF13419 Haloacid dehalogenase-like hydrolase VCLMA_RS12230 PF00834 Ribulose-phosphate 3 epimerase family VCLMA_RS12235 PF02086 D12 class N6 adenine-specific DNA methyltransferase VCLMA_RS12245 PF01761 3-dehydroquinate synthase VCLMA_RS12250 PF01202 Shikimate kinase VCLMA_RS12255 PF07660 Secretin and TonB N terminus short domain VCLMA_RS12255 PF03958 Bacterial type II/III secretion system short domain VCLMA_RS12255 PF00263 Bacterial type II and III secretion system protein VCLMA_RS12255 PF11741 AMIN domain VCLMA_RS12260 PF04351 Pilus assembly protein, PilP VCLMA_RS12285 PF03466 LysR substrate binding domain VCLMA_RS12285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS12290 PF08534 Redoxin VCLMA_RS12290 PF00462 Glutaredoxin VCLMA_RS12295 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCLMA_RS12295 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCLMA_RS12305 PF00206 Lyase VCLMA_RS12305 PF14698 Argininosuccinate lyase C-terminal VCLMA_RS12310 PF00764 Arginosuccinate synthase VCLMA_RS12315 PF00696 Amino acid kinase family VCLMA_RS12320 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCLMA_RS12320 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCLMA_RS12325 PF07687 Peptidase dimerisation domain VCLMA_RS12325 PF01546 Peptidase family M20/M25/M40 VCLMA_RS12330 PF00311 Phosphoenolpyruvate carboxylase VCLMA_RS12345 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VCLMA_RS12345 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VCLMA_RS12350 PF02556 Preprotein translocase subunit SecB VCLMA_RS12355 PF00581 Rhodanese-like domain VCLMA_RS12360 PF00152 tRNA synthetases class II (D, K and N) VCLMA_RS12365 PF02910 Fumarate reductase flavoprotein C-term VCLMA_RS12365 PF00890 FAD binding domain VCLMA_RS12370 PF13085 2Fe-2S iron-sulfur cluster binding domain VCLMA_RS12370 PF13183 4Fe-4S dicluster domain VCLMA_RS12375 PF02300 Fumarate reductase subunit C VCLMA_RS12380 PF02313 Fumarate reductase subunit D VCLMA_RS12385 PF09285 Elongation factor P, C-terminal VCLMA_RS12385 PF08207 Elongation factor P (EF-P) KOW-like domain VCLMA_RS12385 PF01132 Elongation factor P (EF-P) OB domain VCLMA_RS12390 PF04055 Radical SAM superfamily VCLMA_RS12400 PF00118 TCP-1/cpn60 chaperonin family VCLMA_RS12405 PF00166 Chaperonin 10 Kd subunit VCLMA_RS12410 PF08220 DeoR-like helix-turn-helix domain VCLMA_RS12410 PF00455 DeoR C terminal sensor domain VCLMA_RS12430 PF00121 Triosephosphate isomerase VCLMA_RS12435 PF01554 MatE VCLMA_RS12440 PF03737 Aldolase/RraA VCLMA_RS12445 PF01040 UbiA prenyltransferase family VCLMA_RS12450 PF00004 ATPase family associated with various cellular activities (AAA) VCLMA_RS12450 PF07724 AAA domain (Cdc48 subfamily) VCLMA_RS12450 PF10431 C-terminal, D2-small domain, of ClpB protein VCLMA_RS12455 PF00227 Proteasome subunit VCLMA_RS12465 PF00356 Bacterial regulatory proteins, lacI family VCLMA_RS12470 PF18074 Primosomal protein N C-terminal domain VCLMA_RS12470 PF17764 3′ DNA-binding domain (3′BD) VCLMA_RS12470 PF00271 Helicase conserved C-terminal domain VCLMA_RS12470 PF00270 DEAD/DEAH box helicase VCLMA_RS12470 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VCLMA_RS12475 PF01197 Ribosomal protein L31 VCLMA_RS12485 PF01340 Met Apo-repressor, MetJ VCLMA_RS12490 PF01053 Cys/Met metabolism PLP-dependent enzyme VCLMA_RS12495 PF00696 Amino acid kinase family VCLMA_RS12495 PF00742 Homoserine dehydrogenase VCLMA_RS12495 PF03447 Homoserine dehydrogenase, NAD binding domain VCLMA_RS12500 PF02219 Methylenetetrahydrofolate reductase VCLMA_RS12505 PF06005 Cell division protein ZapB VCLMA_RS12510 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VCLMA_RS12515 PF00365 Phosphofructokinase VCLMA_RS12520 PF01545 Cation efflux family VCLMA_RS12520 PF16916 Dimerisation domain of Zinc Transporter VCLMA_RS12530 PF00072 Response regulator receiver domain VCLMA_RS12530 PF00486 Transcriptional regulatory protein, C terminal VCLMA_RS12535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS12535 PF16527 Two-component sensor protein CpxA, periplasmic domain VCLMA_RS12535 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS12535 PF00672 HAMP domain VCLMA_RS12540 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VCLMA_RS12540 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VCLMA_RS12545 PF00588 SpoU rRNA Methylase family VCLMA_RS12550 PF04186 FxsA cytoplasmic membrane protein VCLMA_RS12555 PF17158 Membrane-associated sensor, integral membrane domain VCLMA_RS12555 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS12560 PF10415 Fumarase C C-terminus VCLMA_RS12560 PF00206 Lyase VCLMA_RS12565 PF03605 Anaerobic c4-dicarboxylate membrane transporter VCLMA_RS12575 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VCLMA_RS12575 PF18494 Pullulanase Ins domain VCLMA_RS12575 PF03714 Bacterial pullanase-associated domain VCLMA_RS12575 PF11852 Domain of unknown function (DUF3372) VCLMA_RS12575 PF17967 Pullulanase N2 domain VCLMA_RS12580 PF11412 Disulphide bond corrector protein DsbC VCLMA_RS12580 PF02683 Cytochrome C biogenesis protein transmembrane region VCLMA_RS12585 PF00196 Bacterial regulatory proteins, luxR family VCLMA_RS12585 PF00072 Response regulator receiver domain VCLMA_RS12590 PF03471 Transporter associated domain VCLMA_RS12590 PF00999 Sodium/hydrogen exchanger family VCLMA_RS12590 PF02080 TrkA-C domain VCLMA_RS12605 PF02592 Putative vitamin uptake transporter VCLMA_RS12610 PF00625 Guanylate kinase VCLMA_RS12615 PF01192 RNA polymerase Rpb6 VCLMA_RS12620 PF13291 ACT domain VCLMA_RS12620 PF04607 Region found in RelA / SpoT proteins VCLMA_RS12620 PF02824 TGS domain VCLMA_RS12625 PF17191 RecG wedge domain VCLMA_RS12625 PF00270 DEAD/DEAH box helicase VCLMA_RS12625 PF00271 Helicase conserved C-terminal domain VCLMA_RS12630 PF00860 Permease family VCLMA_RS12635 PF00672 HAMP domain VCLMA_RS12635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS12635 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS12640 PF00072 Response regulator receiver domain VCLMA_RS12640 PF00486 Transcriptional regulatory protein, C terminal VCLMA_RS12645 PF01272 Transcription elongation factor, GreA/GreB, C-term VCLMA_RS12645 PF03449 Transcription elongation factor, N-terminal VCLMA_RS12650 PF09371 Tex-like protein N-terminal domain VCLMA_RS12650 PF16921 Tex protein YqgF-like domain VCLMA_RS12650 PF17674 HHH domain VCLMA_RS12650 PF00575 S1 RNA binding domain VCLMA_RS12660 PF00561 alpha/beta hydrolase fold VCLMA_RS12670 PF01521 Iron-sulphur cluster biosynthesis VCLMA_RS12670 PF01106 NifU-like domain VCLMA_RS12675 PF00293 NUDIX domain VCLMA_RS12680 PF00459 Inositol monophosphatase family VCLMA_RS12685 PF01203 Type II secretion system (T2SS), protein N VCLMA_RS12690 PF04612 Type II secretion system (T2SS), protein M VCLMA_RS12695 PF12693 GspL periplasmic domain VCLMA_RS12695 PF05134 Type II secretion system (T2SS), protein L VCLMA_RS12700 PF03934 Type II secretion system (T2SS), protein K VCLMA_RS12705 PF11612 Type II secretion system (T2SS), protein J VCLMA_RS12705 PF07963 Prokaryotic N-terminal methylation motif VCLMA_RS12710 PF02501 Type II secretion system (T2SS), protein I VCLMA_RS12710 PF07963 Prokaryotic N-terminal methylation motif VCLMA_RS12715 PF12019 Type II transport protein GspH VCLMA_RS12720 PF08334 Type II secretion system (T2SS), protein G VCLMA_RS12720 PF07963 Prokaryotic N-terminal methylation motif VCLMA_RS12725 PF00482 Type II secretion system (T2SS), protein F VCLMA_RS12735 PF00263 Bacterial type II and III secretion system protein VCLMA_RS12735 PF03958 Bacterial type II/III secretion system short domain VCLMA_RS12740 PF11356 Type II secretion system protein C VCLMA_RS12745 PF01479 S4 domain VCLMA_RS12750 PF01430 Hsp33 protein VCLMA_RS12755 PF01293 Phosphoenolpyruvate carboxykinase VCLMA_RS12765 PF09500 Putative thioesterase (yiiD_Cterm) VCLMA_RS12765 PF00583 Acetyltransferase (GNAT) family VCLMA_RS12770 PF02580 D-Tyr-tRNA(Tyr) deacylase VCLMA_RS12775 PF03631 Virulence factor BrkB VCLMA_RS12785 PF00679 Elongation factor G C-terminus VCLMA_RS12785 PF00009 Elongation factor Tu GTP binding domain VCLMA_RS12785 PF03144 Elongation factor Tu domain 2 VCLMA_RS12795 PF03951 Glutamine synthetase, beta-Grasp domain VCLMA_RS12795 PF00120 Glutamine synthetase, catalytic domain VCLMA_RS12805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCLMA_RS12805 PF00512 His Kinase A (phospho-acceptor) domain VCLMA_RS12805 PF00989 PAS fold VCLMA_RS12810 PF02954 Bacterial regulatory protein, Fis family VCLMA_RS12810 PF00158 Sigma-54 interaction domain VCLMA_RS12810 PF00072 Response regulator receiver domain VCLMA_RS12815 PF00563 EAL domain VCLMA_RS12815 PF00990 Diguanylate cyclase, GGDEF domain VCLMA_RS12815 PF13188 PAS domain VCLMA_RS12815 PF03707 Bacterial signalling protein N terminal repeat VCLMA_RS12820 PF00962 Adenosine/AMP deaminase VCLMA_RS12900 PF12724 Flavodoxin domain VCLMA_RS12905 PF02386 Cation transport protein VCLMA_RS12910 PF09186 Domain of unknown function (DUF1949) VCLMA_RS12910 PF01205 Uncharacterized protein family UPF0029 VCLMA_RS12915 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VCLMA_RS12915 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VCLMA_RS12915 PF00378 Enoyl-CoA hydratase/isomerase VCLMA_RS12925 PF03466 LysR substrate binding domain VCLMA_RS12925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCLMA_RS12930 PF07690 Major Facilitator Superfamily VCLMA_RS12935 PF12804 MobA-like NTP transferase domain VCLMA_RS12935 PF00132 Bacterial transferase hexapeptide (six repeats) VCLMA_RS12940 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VCLMA_RS12940 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VCLMA_RS12945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCLMA_RS12945 PF02874 ATP synthase alpha/beta family, beta-barrel domain VCLMA_RS12950 PF00231 ATP synthase VCLMA_RS12955 PF00306 ATP synthase alpha/beta chain, C terminal domain VCLMA_RS12955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCLMA_RS12955 PF02874 ATP synthase alpha/beta family, beta-barrel domain VCLMA_RS12960 PF00213 ATP synthase delta (OSCP) subunit VCLMA_RS12965 PF00430 ATP synthase B/B' CF(0) VCLMA_RS12970 PF00137 ATP synthase subunit C VCLMA_RS12975 PF00119 ATP synthase A chain VCLMA_RS12980 PF03899 ATP synthase I chain VCLMA_RS12985 PF02195 ParB-like nuclease domain VCLMA_RS12985 PF17762 HTH domain found in ParB protein VCLMA_RS12990 PF13614 AAA domain VCLMA_RS12995 PF02527 rRNA small subunit methyltransferase G VCLMA_RS13000 PF13932 GidA associated domain VCLMA_RS13000 PF01134 Glucose inhibited division protein A VCLMA_RS13015 PF14849 YidC periplasmic domain VCLMA_RS13015 PF02096 60Kd inner membrane protein VCLMA_RS13045 PF08299 Bacterial dnaA protein helix-turn-helix VCLMA_RS13045 PF11638 DnaA N-terminal domain VCLMA_RS13045 PF00308 Bacterial dnaA protein VCLMA_RS13125 PF01636 Phosphotransferase enzyme family VCLMA_RS13245 PF01964 Radical SAM ThiC family VCLMA_RS13245 PF13667 ThiC-associated domain VCLMA_RS13820 PF00664 ABC transporter transmembrane region VCLMA_RS13820 PF00005 ABC transporter VCLMA_RS13835 PF00005 ABC transporter VCLMA_RS13845 PF01032 FecCD transport family VCLMA_RS13990 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCLMA_RS14075 PF00665 Integrase core domain VCLMA_RS14200 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VCLMA_RS14200 PF01276 Orn/Lys/Arg decarboxylase, major domain VCLMA_RS14200 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VCLMA_RS14210 PF01276 Orn/Lys/Arg decarboxylase, major domain VCLMA_RS14210 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VCLMA_RS14210 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VCLMA_RS14250 PF00356 Bacterial regulatory proteins, lacI family VCLMA_RS14250 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VCLMA_RS14300 PF12832 MFS_1 like family VCLMA_RS14375 PF07498 Rho termination factor, N-terminal domain VCLMA_RS14375 PF07497 Rho termination factor, RNA-binding domain VCLMA_RS14375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCLMA_RS14535 PF03144 Elongation factor Tu domain 2 VCLMA_RS14535 PF03143 Elongation factor Tu C-terminal domain VCLMA_RS14535 PF00009 Elongation factor Tu GTP binding domain VCLMA_RS14595 PF10385 RNA polymerase beta subunit external 1 domain VCLMA_RS14595 PF00562 RNA polymerase Rpb2, domain 6 VCLMA_RS14595 PF04565 RNA polymerase Rpb2, domain 3 VCLMA_RS14595 PF04560 RNA polymerase Rpb2, domain 7 VCLMA_RS14595 PF04563 RNA polymerase beta subunit VCLMA_RS14595 PF04561 RNA polymerase Rpb2, domain 2 VCLMA_RS14615 PF04565 RNA polymerase Rpb2, domain 3 VCLMA_RS14615 PF00562 RNA polymerase Rpb2, domain 6 VCLMA_RS14615 PF04563 RNA polymerase beta subunit VCLMA_RS14615 PF04561 RNA polymerase Rpb2, domain 2 VCLMA_RS14615 PF10385 RNA polymerase beta subunit external 1 domain VCLMA_RS14615 PF04560 RNA polymerase Rpb2, domain 7 VCLMA_RS14630 PF04998 RNA polymerase Rpb1, domain 5 VCLMA_RS14630 PF00623 RNA polymerase Rpb1, domain 2 VCLMA_RS14630 PF05000 RNA polymerase Rpb1, domain 4 VCLMA_RS14630 PF04997 RNA polymerase Rpb1, domain 1 VCLMA_RS14630 PF04983 RNA polymerase Rpb1, domain 3 VCLMA_RS14810 PF12706 Beta-lactamase superfamily domain VCLMA_RS15175 PF01018 GTP1/OBG VCLMA_RS15175 PF01926 50S ribosome-binding GTPase VCLMA_RS15265 PF01464 Transglycosylase SLT domain VCLMA_RS15265 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VCLMA_RS15690 PF04348 LppC putative lipoprotein VCLMA_RS15740 PF02548 Ketopantoate hydroxymethyltransferase VCLMA_RS15750 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VCLMA_RS15790 PF04408 Helicase associated domain (HA2) VCLMA_RS15790 PF08482 ATP-dependent helicase C-terminal VCLMA_RS15790 PF00271 Helicase conserved C-terminal domain VCLMA_RS15790 PF00270 DEAD/DEAH box helicase VCLMA_RS15890 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VCLMA_RS15890 PF06165 Glycosyltransferase family 36 VCLMA_RS16395 PF01136 Peptidase family U32 VCLMA_RS16395 PF16325 Peptidase family U32 C-terminal domain VCLMA_RS16400 PF16325 Peptidase family U32 C-terminal domain VCLMA_RS16400 PF01136 Peptidase family U32 VCLMA_RS16615 PF01926 50S ribosome-binding GTPase VCLMA_RS16615 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VCLMA_RS16890 PF00012 Hsp70 protein VCLMA_RS16935 PF03806 AbgT putative transporter family VCLMA_RS16975 PF02769 AIR synthase related protein, C-terminal domain VCLMA_RS16975 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VCLMA_RS16975 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VCLMA_RS16995 PF04073 Aminoacyl-tRNA editing domain VCLMA_RS16995 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCLMA_RS16995 PF03129 Anticodon binding domain VCLMA_RS17265 PF03717 Penicillin-binding Protein dimerisation domain VCLMA_RS17265 PF00905 Penicillin binding protein transpeptidase domain VCLMA_RS17290 PF13603 Leucyl-tRNA synthetase, Domain 2 VCLMA_RS17290 PF00133 tRNA synthetases class I (I, L, M and V) VCLMA_RS17290 PF08264 Anticodon-binding domain of tRNA VCLMA_RS17415 PF13737 Transposase DDE domain VCLMA_RS17430 PF02541 Ppx/GppA phosphatase family VCLMA_RS17435 PF04348 LppC putative lipoprotein