locus-tag class description VCD_RS00010 PF02569 Pantoate-beta-alanine ligase VCD_RS00015 PF01061 ABC-2 type transporter VCD_RS00020 PF00005 ABC transporter VCD_RS00025 PF01740 STAS domain VCD_RS00025 PF00916 Sulfate permease family VCD_RS00030 PF00484 Carbonic anhydrase VCD_RS00035 PF00156 Phosphoribosyl transferase domain VCD_RS00040 PF00440 Bacterial regulatory proteins, tetR family VCD_RS00045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCD_RS00050 PF04348 LppC putative lipoprotein VCD_RS00055 PF02021 Uncharacterised protein family UPF0102 VCD_RS00060 PF13580 SIS domain VCD_RS00065 PF04972 BON domain VCD_RS00070 PF04386 Stringent starvation protein B VCD_RS00075 PF02798 Glutathione S-transferase, N-terminal domain VCD_RS00075 PF00043 Glutathione S-transferase, C-terminal domain VCD_RS00080 PF02167 Cytochrome C1 family VCD_RS00085 PF00033 Cytochrome b/b6/petB VCD_RS00085 PF00032 Cytochrome b(C-terminal)/b6/petD VCD_RS00090 PF00355 Rieske [2Fe-2S] domain VCD_RS00090 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VCD_RS00095 PF00380 Ribosomal protein S9/S16 VCD_RS00100 PF00572 Ribosomal protein L13 VCD_RS00110 PF03969 AFG1-like ATPase VCD_RS00120 PF00595 PDZ domain VCD_RS00125 PF13180 PDZ domain VCD_RS00130 PF01245 Ribosomal protein L19 VCD_RS00135 PF01746 tRNA (Guanine-1)-methyltransferase VCD_RS00140 PF01782 RimM N-terminal domain VCD_RS00140 PF05239 PRC-barrel domain VCD_RS00145 PF00886 Ribosomal protein S16 VCD_RS00150 PF02978 Signal peptide binding domain VCD_RS00150 PF02881 SRP54-type protein, helical bundle domain VCD_RS00150 PF00448 SRP54-type protein, GTPase domain VCD_RS00155 PF01578 Cytochrome C assembly protein VCD_RS00160 PF03471 Transporter associated domain VCD_RS00160 PF01595 Cyclin M transmembrane N-terminal domain VCD_RS00160 PF00571 CBS domain VCD_RS00165 PF02664 S-Ribosylhomocysteinase (LuxS) VCD_RS00170 PF04262 Glutamate-cysteine ligase VCD_RS00175 PF05193 Peptidase M16 inactive domain VCD_RS00175 PF00675 Insulinase (Peptidase family M16) VCD_RS00180 PF09335 SNARE associated Golgi protein VCD_RS00185 PF08240 Alcohol dehydrogenase GroES-like domain VCD_RS00185 PF00107 Zinc-binding dehydrogenase VCD_RS00190 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VCD_RS00195 PF00682 HMGL-like VCD_RS00195 PF02436 Conserved carboxylase domain VCD_RS00195 PF00364 Biotin-requiring enzyme VCD_RS00200 PF04277 Oxaloacetate decarboxylase, gamma chain VCD_RS00245 PF02599 Global regulator protein family VCD_RS00250 PF13840 ACT domain VCD_RS00250 PF01842 ACT domain VCD_RS00250 PF00696 Amino acid kinase family VCD_RS00255 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VCD_RS00255 PF02272 DHHA1 domain VCD_RS00255 PF01411 tRNA synthetases class II (A) VCD_RS00260 PF02631 RecX family VCD_RS00265 PF00154 recA bacterial DNA recombination protein VCD_RS00270 PF02464 Competence-damaged protein VCD_RS00275 PF00005 ABC transporter VCD_RS00275 PF12857 TOBE-like domain VCD_RS00280 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS00285 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS00295 PF00291 Pyridoxal-phosphate dependent enzyme VCD_RS00300 PF01624 MutS domain I VCD_RS00300 PF05188 MutS domain II VCD_RS00300 PF05192 MutS domain III VCD_RS00300 PF05190 MutS family domain IV VCD_RS00300 PF00488 MutS domain V VCD_RS00305 PF00140 Sigma-70 factor, region 1.2 VCD_RS00305 PF04542 Sigma-70 region 2 VCD_RS00305 PF04539 Sigma-70 region 3 VCD_RS00305 PF04545 Sigma-70, region 4 VCD_RS00310 PF01551 Peptidase family M23 VCD_RS00310 PF01476 LysM domain VCD_RS00320 PF01975 Survival protein SurE VCD_RS00325 PF01142 tRNA pseudouridine synthase D (TruD) VCD_RS00330 PF02542 YgbB family VCD_RS00335 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VCD_RS00340 PF04977 Septum formation initiator VCD_RS00345 PF02673 Bacitracin resistance protein BacA VCD_RS00350 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VCD_RS00355 PF02152 Dihydroneopterin aldolase VCD_RS00360 PF02660 Glycerol-3-phosphate acyltransferase VCD_RS00365 PF00561 alpha/beta hydrolase fold VCD_RS00370 PF00814 Glycoprotease family VCD_RS00375 PF01165 Ribosomal protein S21 VCD_RS00380 PF09424 Yqey-like protein VCD_RS00385 PF08275 DNA primase catalytic core, N-terminal domain VCD_RS00385 PF08278 DNA primase DnaG DnaB-binding VCD_RS00385 PF01807 CHC2 zinc finger VCD_RS00385 PF10410 DnaB-helicase binding domain of primase VCD_RS00390 PF04539 Sigma-70 region 3 VCD_RS00390 PF04546 Sigma-70, non-essential region VCD_RS00390 PF03979 Sigma-70 factor, region 1.1 VCD_RS00390 PF00140 Sigma-70 factor, region 1.2 VCD_RS00390 PF04542 Sigma-70 region 2 VCD_RS00390 PF04545 Sigma-70, region 4 VCD_RS00400 PF13356 Arm DNA-binding domain VCD_RS00400 PF00589 Phage integrase family VCD_RS00405 PF00563 EAL domain VCD_RS00405 PF08668 HDOD domain VCD_RS00410 PF00672 HAMP domain VCD_RS00410 PF02743 Cache domain VCD_RS00410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS00415 PF12833 Helix-turn-helix domain VCD_RS00420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS00420 PF08447 PAS fold VCD_RS00430 PF04002 RadC-like JAB domain VCD_RS00465 PF01551 Peptidase family M23 VCD_RS00465 PF08525 Opacity-associated protein A N-terminal motif VCD_RS00465 PF01476 LysM domain VCD_RS00470 PF00114 Pilin (bacterial filament) VCD_RS00470 PF07963 Prokaryotic N-terminal methylation motif VCD_RS00480 PF01527 Transposase VCD_RS00485 PF00665 Integrase core domain VCD_RS00490 PF00075 RNase H VCD_RS00540 PF03480 Bacterial extracellular solute-binding protein, family 7 VCD_RS00545 PF01380 SIS domain VCD_RS00550 PF08220 DeoR-like helix-turn-helix domain VCD_RS00550 PF00455 DeoR C terminal sensor domain VCD_RS00555 PF02887 Pyruvate kinase, alpha/beta domain VCD_RS00555 PF00224 Pyruvate kinase, barrel domain VCD_RS00560 PF04402 Protein of unknown function (DUF541) VCD_RS00565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS00565 PF03466 LysR substrate binding domain VCD_RS00570 PF01810 LysE type translocator VCD_RS00575 PF05552 Conserved TM helix VCD_RS00575 PF00924 Mechanosensitive ion channel VCD_RS00585 PF01116 Fructose-bisphosphate aldolase class-II VCD_RS00590 PF00162 Phosphoglycerate kinase VCD_RS00595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCD_RS00595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCD_RS00600 PF00593 TonB dependent receptor VCD_RS00600 PF07715 TonB-dependent Receptor Plug Domain VCD_RS00605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS00605 PF03466 LysR substrate binding domain VCD_RS00610 PF00456 Transketolase, thiamine diphosphate binding domain VCD_RS00610 PF02779 Transketolase, pyrimidine binding domain VCD_RS00610 PF02780 Transketolase, C-terminal domain VCD_RS00620 PF00438 S-adenosylmethionine synthetase, N-terminal domain VCD_RS00620 PF02772 S-adenosylmethionine synthetase, central domain VCD_RS00620 PF02773 S-adenosylmethionine synthetase, C-terminal domain VCD_RS00625 PF10263 SprT-like family VCD_RS00625 PF17283 SprT-like zinc ribbon domain VCD_RS00630 PF04231 Endonuclease I VCD_RS00635 PF04452 RNA methyltransferase VCD_RS00640 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VCD_RS00640 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VCD_RS00645 PF02622 Uncharacterized ACR, COG1678 VCD_RS00650 PF03652 Holliday junction resolvase VCD_RS00655 PF01479 S4 domain VCD_RS00655 PF00579 tRNA synthetases class I (W and Y) VCD_RS00670 PF00437 Type II/IV secretion system protein VCD_RS00675 PF01168 Alanine racemase, N-terminal domain VCD_RS00680 PF14748 Pyrroline-5-carboxylate reductase dimerisation VCD_RS00680 PF03807 NADP oxidoreductase coenzyme F420-dependent VCD_RS00685 PF02325 YGGT family VCD_RS00690 PF02594 Uncharacterised ACR, YggU family COG1872 VCD_RS00700 PF01725 Ham1 family VCD_RS00705 PF04055 Radical SAM superfamily VCD_RS00705 PF06969 HemN C-terminal domain VCD_RS00710 PF04960 Glutaminase VCD_RS00715 PF02390 Putative methyltransferase VCD_RS00720 PF10576 Iron-sulfur binding domain of endonuclease III VCD_RS00720 PF00633 Helix-hairpin-helix motif VCD_RS00720 PF00730 HhH-GPD superfamily base excision DNA repair protein VCD_RS00720 PF14815 NUDIX domain VCD_RS00725 PF04362 Bacterial Fe(2+) trafficking VCD_RS00730 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VCD_RS00730 PF01464 Transglycosylase SLT domain VCD_RS00755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS00755 PF00672 HAMP domain VCD_RS00755 PF17200 Single Cache domain 2 VCD_RS00785 PF05099 Tellurite resistance protein TerB VCD_RS00785 PF00226 DnaJ domain VCD_RS00790 PF03968 OstA-like protein VCD_RS00790 PF04453 LPS transport system D VCD_RS00795 PF09312 SurA N-terminal domain VCD_RS00800 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VCD_RS00805 PF00398 Ribosomal RNA adenine dimethylase VCD_RS00810 PF04379 ApaG domain VCD_RS00815 PF00149 Calcineurin-like phosphoesterase VCD_RS00820 PF00186 Dihydrofolate reductase VCD_RS00825 PF12821 Threonine/Serine exporter, ThrE VCD_RS00830 PF06738 Putative threonine/serine exporter VCD_RS00835 PF01926 50S ribosome-binding GTPase VCD_RS00835 PF01018 GTP1/OBG VCD_RS00840 PF01016 Ribosomal L27 protein VCD_RS00845 PF00829 Ribosomal prokaryotic L21 protein VCD_RS00850 PF00348 Polyprenyl synthetase VCD_RS00855 PF13520 Amino acid permease VCD_RS00860 PF13520 Amino acid permease VCD_RS00865 PF00056 lactate/malate dehydrogenase, NAD binding domain VCD_RS00865 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VCD_RS00870 PF02863 Arginine repressor, C-terminal domain VCD_RS00870 PF01316 Arginine repressor, DNA binding domain VCD_RS00875 PF16868 NMT1-like family VCD_RS00885 PF00582 Universal stress protein family VCD_RS00910 PF13657 HipA N-terminal domain VCD_RS00910 PF07804 HipA-like C-terminal domain VCD_RS00925 PF02384 N-6 DNA Methylase VCD_RS00935 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCD_RS00935 PF18766 SWI2/SNF2 ATPase VCD_RS00935 PF11867 Domain of unknown function (DUF3387) VCD_RS00980 PF06877 Regulator of ribonuclease activity B VCD_RS00990 PF01523 Putative modulator of DNA gyrase VCD_RS00995 PF00795 Carbon-nitrogen hydrolase VCD_RS01000 PF13502 AsmA-like C-terminal region VCD_RS01000 PF13116 Protein of unknown function VCD_RS01005 PF00575 S1 RNA binding domain VCD_RS01005 PF10150 Ribonuclease E/G family VCD_RS01010 PF02545 Maf-like protein VCD_RS01015 PF04093 rod shape-determining protein MreD VCD_RS01020 PF04085 rod shape-determining protein MreC VCD_RS01055 PF07963 Prokaryotic N-terminal methylation motif VCD_RS01060 PF07963 Prokaryotic N-terminal methylation motif VCD_RS01070 PF00482 Type II secretion system (T2SS), protein F VCD_RS01075 PF00437 Type II/IV secretion system protein VCD_RS01075 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VCD_RS01085 PF01471 Putative peptidoglycan binding domain VCD_RS01085 PF13401 AAA domain VCD_RS01090 PF07660 Secretin and TonB N terminus short domain VCD_RS01090 PF03958 Bacterial type II/III secretion system short domain VCD_RS01090 PF00263 Bacterial type II and III secretion system protein VCD_RS01090 PF11741 AMIN domain VCD_RS01110 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS01110 PF17157 Gammaproteobacterial periplasmic sensor domain VCD_RS01110 PF00563 EAL domain VCD_RS01115 PF00436 Single-strand binding protein family VCD_RS01120 PF00196 Bacterial regulatory proteins, luxR family VCD_RS01125 PF00483 Nucleotidyl transferase VCD_RS01130 PF17760 UvrA interaction domain VCD_RS01130 PF17755 UvrA DNA-binding domain VCD_RS01130 PF00005 ABC transporter VCD_RS01140 PF00266 Aminotransferase class-V VCD_RS01145 PF01842 ACT domain VCD_RS01145 PF00696 Amino acid kinase family VCD_RS01150 PF02965 Vitamin B12 dependent methionine synthase, activation domain VCD_RS01150 PF00809 Pterin binding enzyme VCD_RS01150 PF02574 Homocysteine S-methyltransferase VCD_RS01150 PF02607 B12 binding domain VCD_RS01150 PF02310 B12 binding domain VCD_RS01155 PF00999 Sodium/hydrogen exchanger family VCD_RS01195 PF01507 Phosphoadenosine phosphosulfate reductase family VCD_RS01200 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VCD_RS01200 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VCD_RS01205 PF00667 FAD binding domain VCD_RS01205 PF00258 Flavodoxin VCD_RS01205 PF00175 Oxidoreductase NAD-binding domain VCD_RS01225 PF09583 Phage shock protein G (Phageshock_PspG) VCD_RS01230 PF01207 Dihydrouridine synthase (Dus) VCD_RS01235 PF01475 Ferric uptake regulator family VCD_RS01245 PF12706 Beta-lactamase superfamily domain VCD_RS01250 PF00342 Phosphoglucose isomerase VCD_RS01255 PF01894 Uncharacterised protein family UPF0047 VCD_RS01260 PF01168 Alanine racemase, N-terminal domain VCD_RS01260 PF00842 Alanine racemase, C-terminal domain VCD_RS01265 PF00772 DnaB-like helicase N terminal domain VCD_RS01265 PF03796 DnaB-like helicase C terminal domain VCD_RS01275 PF03948 Ribosomal protein L9, C-terminal domain VCD_RS01275 PF01281 Ribosomal protein L9, N-terminal domain VCD_RS01280 PF01084 Ribosomal protein S18 VCD_RS01285 PF00436 Single-strand binding protein family VCD_RS01290 PF01250 Ribosomal protein S6 VCD_RS01295 PF00210 Ferritin-like domain VCD_RS01300 PF04324 BFD-like [2Fe-2S] binding domain VCD_RS01305 PF00009 Elongation factor Tu GTP binding domain VCD_RS01305 PF03143 Elongation factor Tu C-terminal domain VCD_RS01305 PF03144 Elongation factor Tu domain 2 VCD_RS01310 PF14492 Elongation Factor G, domain II VCD_RS01310 PF00009 Elongation factor Tu GTP binding domain VCD_RS01310 PF03764 Elongation factor G, domain IV VCD_RS01310 PF03144 Elongation factor Tu domain 2 VCD_RS01310 PF00679 Elongation factor G C-terminus VCD_RS01315 PF00177 Ribosomal protein S7p/S5e VCD_RS01320 PF00164 Ribosomal protein S12/S23 VCD_RS01330 PF02635 DsrE/DsrF-like family VCD_RS01335 PF02635 DsrE/DsrF-like family VCD_RS01340 PF13309 HTH domain VCD_RS01340 PF08348 YheO-like PAS domain VCD_RS01345 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VCD_RS01345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCD_RS01355 PF04102 SlyX VCD_RS01360 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VCD_RS01365 PF01145 SPFH domain / Band 7 family VCD_RS01370 PF12221 Bacterial membrane protein N terminal VCD_RS01370 PF01145 SPFH domain / Band 7 family VCD_RS01375 PF01926 50S ribosome-binding GTPase VCD_RS01375 PF13167 GTP-binding GTPase N-terminal VCD_RS01375 PF16360 GTP-binding GTPase Middle Region VCD_RS01380 PF17209 Hfq protein VCD_RS01390 PF01119 DNA mismatch repair protein, C-terminal domain VCD_RS01390 PF08676 MutL C terminal dimerisation domain VCD_RS01395 PF01520 N-acetylmuramoyl-L-alanine amidase VCD_RS01400 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VCD_RS01405 PF08331 Domain of unknown function (DUF1730) VCD_RS01450 PF00929 Exonuclease VCD_RS01455 PF03193 RsgA GTPase VCD_RS01460 PF02666 Phosphatidylserine decarboxylase VCD_RS01465 PF00939 Sodium:sulfate symporter transmembrane region VCD_RS01475 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VCD_RS01475 PF01676 Metalloenzyme superfamily VCD_RS01480 PF01551 Peptidase family M23 VCD_RS01490 PF00440 Bacterial regulatory proteins, tetR family VCD_RS01490 PF08360 QacR-like protein, C-terminal region VCD_RS01495 PF01208 Uroporphyrinogen decarboxylase (URO-D) VCD_RS01500 PF09297 NADH pyrophosphatase zinc ribbon domain VCD_RS01500 PF00293 NUDIX domain VCD_RS01505 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VCD_RS01510 PF04998 RNA polymerase Rpb1, domain 5 VCD_RS01510 PF04997 RNA polymerase Rpb1, domain 1 VCD_RS01510 PF04983 RNA polymerase Rpb1, domain 3 VCD_RS01510 PF00623 RNA polymerase Rpb1, domain 2 VCD_RS01510 PF05000 RNA polymerase Rpb1, domain 4 VCD_RS01515 PF04561 RNA polymerase Rpb2, domain 2 VCD_RS01515 PF10385 RNA polymerase beta subunit external 1 domain VCD_RS01515 PF04565 RNA polymerase Rpb2, domain 3 VCD_RS01515 PF04560 RNA polymerase Rpb2, domain 7 VCD_RS01515 PF00562 RNA polymerase Rpb2, domain 6 VCD_RS01515 PF04563 RNA polymerase beta subunit VCD_RS01520 PF00542 Ribosomal protein L7/L12 C-terminal domain VCD_RS01520 PF16320 Ribosomal protein L7/L12 dimerisation domain VCD_RS01525 PF00466 Ribosomal protein L10 VCD_RS01530 PF00687 Ribosomal protein L1p/L10e family VCD_RS01535 PF03946 Ribosomal protein L11, N-terminal domain VCD_RS01535 PF00298 Ribosomal protein L11, RNA binding domain VCD_RS01540 PF00467 KOW motif VCD_RS01540 PF02357 Transcription termination factor nusG VCD_RS01545 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VCD_RS01550 PF00009 Elongation factor Tu GTP binding domain VCD_RS01550 PF03143 Elongation factor Tu C-terminal domain VCD_RS01550 PF03144 Elongation factor Tu domain 2 VCD_RS01575 PF00485 Phosphoribulokinase / Uridine kinase family VCD_RS01580 PF02237 Biotin protein ligase C terminal domain VCD_RS01580 PF03099 Biotin/lipoate A/B protein ligase family VCD_RS01580 PF08279 HTH domain VCD_RS01585 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VCD_RS01585 PF01565 FAD binding domain VCD_RS01600 PF13091 PLD-like domain VCD_RS01635 PF00175 Oxidoreductase NAD-binding domain VCD_RS01640 PF00175 Oxidoreductase NAD-binding domain VCD_RS01640 PF00970 Oxidoreductase FAD-binding domain VCD_RS01640 PF00111 2Fe-2S iron-sulfur cluster binding domain VCD_RS01645 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VCD_RS01655 PF07498 Rho termination factor, N-terminal domain VCD_RS01655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCD_RS01655 PF07497 Rho termination factor, RNA-binding domain VCD_RS01660 PF00085 Thioredoxin VCD_RS01665 PF00270 DEAD/DEAH box helicase VCD_RS01665 PF00271 Helicase conserved C-terminal domain VCD_RS01670 PF02541 Ppx/GppA phosphatase family VCD_RS01675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS01675 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS01675 PF00072 Response regulator receiver domain VCD_RS01675 PF09456 RcsC Alpha-Beta-Loop (ABL) VCD_RS01680 PF12832 MFS_1 like family VCD_RS01700 PF00501 AMP-binding enzyme VCD_RS01700 PF13193 AMP-binding enzyme C-terminal domain VCD_RS01700 PF16177 Acetyl-coenzyme A synthetase N-terminus VCD_RS01705 PF01220 Dehydroquinase class II VCD_RS01710 PF00364 Biotin-requiring enzyme VCD_RS01715 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCD_RS01715 PF00289 Biotin carboxylase, N-terminal domain VCD_RS01715 PF02785 Biotin carboxylase C-terminal domain VCD_RS01725 PF01207 Dihydrouridine synthase (Dus) VCD_RS01730 PF02954 Bacterial regulatory protein, Fis family VCD_RS01735 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VCD_RS01735 PF00356 Bacterial regulatory proteins, lacI family VCD_RS01740 PF00920 Dehydratase family VCD_RS01745 PF01202 Shikimate kinase VCD_RS01750 PF02447 GntP family permease VCD_RS01755 PF01081 KDPG and KHG aldolase VCD_RS01760 PF00593 TonB dependent receptor VCD_RS01760 PF07715 TonB-dependent Receptor Plug Domain VCD_RS01775 PF00672 HAMP domain VCD_RS01775 PF17200 Single Cache domain 2 VCD_RS01775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS01780 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VCD_RS01780 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VCD_RS01780 PF01276 Orn/Lys/Arg decarboxylase, major domain VCD_RS01785 PF13520 Amino acid permease VCD_RS01790 PF18500 CadC C-terminal domain 1 VCD_RS01790 PF00486 Transcriptional regulatory protein, C terminal VCD_RS01795 PF13411 MerR HTH family regulatory protein VCD_RS01800 PF02142 MGS-like domain VCD_RS01800 PF01808 AICARFT/IMPCHase bienzyme VCD_RS01805 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VCD_RS01805 PF02843 Phosphoribosylglycinamide synthetase, C domain VCD_RS01805 PF02844 Phosphoribosylglycinamide synthetase, N domain VCD_RS01815 PF00216 Bacterial DNA-binding protein VCD_RS01825 PF01595 Cyclin M transmembrane N-terminal domain VCD_RS01825 PF00571 CBS domain VCD_RS01830 PF00480 ROK family VCD_RS01835 PF01238 Phosphomannose isomerase type I VCD_RS01840 PF04222 Protein of unknown function (DUF416) VCD_RS01845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCD_RS01850 PF03167 Uracil DNA glycosylase superfamily VCD_RS01855 PF00924 Mechanosensitive ion channel VCD_RS01860 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VCD_RS01860 PF00753 Metallo-beta-lactamase superfamily VCD_RS01860 PF10996 Beta-Casp domain VCD_RS01865 PF02397 Bacterial sugar transferase VCD_RS01870 PF01370 NAD dependent epimerase/dehydratase family VCD_RS01875 PF02719 Polysaccharide biosynthesis protein VCD_RS01895 PF13808 DDE_Tnp_1-associated VCD_RS01895 PF01609 Transposase DDE domain VCD_RS01900 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_RS01910 PF00171 Aldehyde dehydrogenase family VCD_RS01910 PF00465 Iron-containing alcohol dehydrogenase VCD_RS01915 PF13193 AMP-binding enzyme C-terminal domain VCD_RS01915 PF00501 AMP-binding enzyme VCD_RS01925 PF14524 Wzt C-terminal domain VCD_RS01925 PF00005 ABC transporter VCD_RS01940 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VCD_RS01945 PF16363 GDP-mannose 4,6 dehydratase VCD_RS01950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCD_RS01950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCD_RS01950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCD_RS01950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCD_RS01955 PF00483 Nucleotidyl transferase VCD_RS01955 PF01050 Mannose-6-phosphate isomerase VCD_RS01960 PF01370 NAD dependent epimerase/dehydratase family VCD_RS01965 PF01522 Polysaccharide deacetylase VCD_RS01965 PF00457 Glycosyl hydrolases family 11 VCD_RS01980 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCD_RS01990 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VCD_RS01995 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VCD_RS02030 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCD_RS02035 PF00535 Glycosyl transferase family 2 VCD_RS02040 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VCD_RS02045 PF01467 Cytidylyltransferase-like VCD_RS02050 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VCD_RS02050 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VCD_RS02050 PF06827 Zinc finger found in FPG and IleRS VCD_RS02060 PF00471 Ribosomal protein L33 VCD_RS02065 PF00830 Ribosomal L28 family VCD_RS02070 PF04002 RadC-like JAB domain VCD_RS02075 PF00672 HAMP domain VCD_RS02075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS02075 PF17200 Single Cache domain 2 VCD_RS02080 PF02441 Flavoprotein VCD_RS02080 PF04127 DNA / pantothenate metabolism flavoprotein VCD_RS02085 PF00440 Bacterial regulatory proteins, tetR family VCD_RS02090 PF03279 Bacterial lipid A biosynthesis acyltransferase VCD_RS02095 PF03279 Bacterial lipid A biosynthesis acyltransferase VCD_RS02100 PF00156 Phosphoribosyl transferase domain VCD_RS02105 PF01138 3' exoribonuclease family, domain 1 VCD_RS02105 PF03725 3' exoribonuclease family, domain 2 VCD_RS02110 PF03755 YicC-like family, N-terminal region VCD_RS02110 PF08340 Domain of unknown function (DUF1732) VCD_RS02115 PF03350 Uncharacterized protein family, UPF0114 VCD_RS02120 PF00367 phosphotransferase system, EIIB VCD_RS02120 PF02378 Phosphotransferase system, EIIC VCD_RS02125 PF13580 SIS domain VCD_RS02135 PF01418 Helix-turn-helix domain, rpiR family VCD_RS02135 PF01380 SIS domain VCD_RS02140 PF01032 FecCD transport family VCD_RS02145 PF01497 Periplasmic binding protein VCD_RS02150 PF00005 ABC transporter VCD_RS02155 PF07715 TonB-dependent Receptor Plug Domain VCD_RS02155 PF00593 TonB dependent receptor VCD_RS02160 PF00664 ABC transporter transmembrane region VCD_RS02160 PF00005 ABC transporter VCD_RS02175 PF00570 HRDC domain VCD_RS02175 PF00271 Helicase conserved C-terminal domain VCD_RS02175 PF09382 RQC domain VCD_RS02175 PF00270 DEAD/DEAH box helicase VCD_RS02175 PF16124 RecQ zinc-binding VCD_RS02180 PF00892 EamA-like transporter family VCD_RS02190 PF12833 Helix-turn-helix domain VCD_RS02195 PF01810 LysE type translocator VCD_RS02200 PF00580 UvrD/REP helicase N-terminal domain VCD_RS02200 PF13361 UvrD-like helicase C-terminal domain VCD_RS02205 PF01432 Peptidase family M3 VCD_RS02210 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VCD_RS02215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCD_RS02215 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_RS02255 PF01734 Patatin-like phospholipase VCD_RS02280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCD_RS02290 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS02290 PF12911 N-terminal TM domain of oligopeptide transport permease C VCD_RS02295 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS02300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCD_RS02305 PF00005 ABC transporter VCD_RS02305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_RS02345 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VCD_RS02350 PF00580 UvrD/REP helicase N-terminal domain VCD_RS02350 PF13361 UvrD-like helicase C-terminal domain VCD_RS02355 PF00440 Bacterial regulatory proteins, tetR family VCD_RS02360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_RS02365 PF00873 AcrB/AcrD/AcrF family VCD_RS02370 PF04380 Membrane fusogenic activity VCD_RS02375 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VCD_RS02375 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VCD_RS02380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS02380 PF03466 LysR substrate binding domain VCD_RS02425 PF12724 Flavodoxin domain VCD_RS02430 PF02386 Cation transport protein VCD_RS02435 PF09186 Domain of unknown function (DUF1949) VCD_RS02435 PF01205 Uncharacterized protein family UPF0029 VCD_RS02440 PF00378 Enoyl-CoA hydratase/isomerase VCD_RS02440 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VCD_RS02440 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VCD_RS02445 PF02803 Thiolase, C-terminal domain VCD_RS02445 PF00108 Thiolase, N-terminal domain VCD_RS02450 PF03466 LysR substrate binding domain VCD_RS02450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS02455 PF07690 Major Facilitator Superfamily VCD_RS02460 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_RS02460 PF12804 MobA-like NTP transferase domain VCD_RS02465 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VCD_RS02465 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VCD_RS02470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCD_RS02470 PF02874 ATP synthase alpha/beta family, beta-barrel domain VCD_RS02475 PF00231 ATP synthase VCD_RS02480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCD_RS02480 PF02874 ATP synthase alpha/beta family, beta-barrel domain VCD_RS02480 PF00306 ATP synthase alpha/beta chain, C terminal domain VCD_RS02485 PF00213 ATP synthase delta (OSCP) subunit VCD_RS02490 PF00430 ATP synthase B/B' CF(0) VCD_RS02495 PF00137 ATP synthase subunit C VCD_RS02500 PF00119 ATP synthase A chain VCD_RS02505 PF03899 ATP synthase I chain VCD_RS02510 PF17762 HTH domain found in ParB protein VCD_RS02510 PF02195 ParB-like nuclease domain VCD_RS02515 PF13614 AAA domain VCD_RS02520 PF02527 rRNA small subunit methyltransferase G VCD_RS02525 PF01134 Glucose inhibited division protein A VCD_RS02525 PF13932 GidA associated domain VCD_RS02535 PF00258 Flavodoxin VCD_RS02540 PF01926 50S ribosome-binding GTPase VCD_RS02540 PF12631 MnmE helical domain VCD_RS02540 PF10396 GTP-binding protein TrmE N-terminus VCD_RS02545 PF14849 YidC periplasmic domain VCD_RS02545 PF02096 60Kd inner membrane protein VCD_RS02550 PF01809 Putative membrane protein insertion efficiency factor VCD_RS02555 PF00825 Ribonuclease P VCD_RS02560 PF00468 Ribosomal protein L34 VCD_RS02565 PF00005 ABC transporter VCD_RS02570 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS02575 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_RS02580 PF11638 DnaA N-terminal domain VCD_RS02580 PF08299 Bacterial dnaA protein helix-turn-helix VCD_RS02580 PF00308 Bacterial dnaA protein VCD_RS02585 PF00712 DNA polymerase III beta subunit, N-terminal domain VCD_RS02585 PF02767 DNA polymerase III beta subunit, central domain VCD_RS02585 PF02768 DNA polymerase III beta subunit, C-terminal domain VCD_RS02590 PF02463 RecF/RecN/SMC N terminal domain VCD_RS02595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS02595 PF00204 DNA gyrase B VCD_RS02595 PF01751 Toprim domain VCD_RS02595 PF00986 DNA gyrase B subunit, carboxyl terminus VCD_RS02595 PF18053 DNA gyrase B subunit insert domain VCD_RS02610 PF00011 Hsp20/alpha crystallin family VCD_RS02615 PF00155 Aminotransferase class I and II VCD_RS02620 PF02092 Glycyl-tRNA synthetase beta subunit VCD_RS02620 PF05746 DALR anticodon binding domain VCD_RS02625 PF02091 Glycyl-tRNA synthetase alpha subunit VCD_RS02630 PF01169 Uncharacterized protein family UPF0016 VCD_RS02640 PF01206 Sulfurtransferase TusA VCD_RS02650 PF08240 Alcohol dehydrogenase GroES-like domain VCD_RS02650 PF00107 Zinc-binding dehydrogenase VCD_RS02655 PF00585 C-terminal regulatory domain of Threonine dehydratase VCD_RS02655 PF00291 Pyridoxal-phosphate dependent enzyme VCD_RS02660 PF00920 Dehydratase family VCD_RS02665 PF01063 Amino-transferase class IV VCD_RS02675 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCD_RS02675 PF00205 Thiamine pyrophosphate enzyme, central domain VCD_RS02675 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCD_RS02680 PF13335 Magnesium chelatase, subunit ChlI C-terminal VCD_RS02680 PF01078 Magnesium chelatase, subunit ChlI VCD_RS02685 PF01553 Acyltransferase VCD_RS02690 PF01323 DSBA-like thioredoxin domain VCD_RS02695 PF01636 Phosphotransferase enzyme family VCD_RS02700 PF12801 4Fe-4S binding domain VCD_RS02700 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VCD_RS02700 PF13746 4Fe-4S dicluster domain VCD_RS02705 PF06288 Protein of unknown function (DUF1040) VCD_RS02715 PF07070 SpoOM protein VCD_RS02720 PF03006 Haemolysin-III related VCD_RS02730 PF02386 Cation transport protein VCD_RS02735 PF02080 TrkA-C domain VCD_RS02735 PF02254 TrkA-N domain VCD_RS02740 PF01029 NusB family VCD_RS02740 PF01189 16S rRNA methyltransferase RsmB/F VCD_RS02745 PF00551 Formyl transferase VCD_RS02745 PF02911 Formyl transferase, C-terminal domain VCD_RS02750 PF01327 Polypeptide deformylase VCD_RS02755 PF01476 LysM domain VCD_RS02760 PF02481 DNA recombination-mediator protein A VCD_RS02760 PF17782 DprA winged helix domain VCD_RS02765 PF04361 Protein of unknown function (DUF494) VCD_RS02770 PF01396 Topoisomerase DNA binding C4 zinc finger VCD_RS02775 PF02222 ATP-grasp domain VCD_RS02775 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VCD_RS02780 PF00731 AIR carboxylase VCD_RS02785 PF01300 Telomere recombination VCD_RS02790 PF01218 Coproporphyrinogen III oxidase VCD_RS02795 PF08501 Shikimate dehydrogenase substrate binding domain VCD_RS02795 PF01488 Shikimate / quinate 5-dehydrogenase VCD_RS02795 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VCD_RS02805 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_RS02845 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VCD_RS02850 PF01964 Radical SAM ThiC family VCD_RS02850 PF13667 ThiC-associated domain VCD_RS02855 PF02581 Thiamine monophosphate synthase VCD_RS02860 PF00899 ThiF family VCD_RS02865 PF02597 ThiS family VCD_RS02870 PF05690 Thiazole biosynthesis protein ThiG VCD_RS02875 PF06968 Biotin and Thiamin Synthesis associated domain VCD_RS02875 PF04055 Radical SAM superfamily VCD_RS02880 PF00557 Metallopeptidase family M24 VCD_RS02880 PF01321 Creatinase/Prolidase N-terminal domain VCD_RS02880 PF00557 Metallopeptidase family M24 VCD_RS02880 PF01321 Creatinase/Prolidase N-terminal domain VCD_RS02885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS02885 PF03466 LysR substrate binding domain VCD_RS02890 PF07690 Major Facilitator Superfamily VCD_RS02900 PF01037 Lrp/AsnC ligand binding domain VCD_RS02905 PF00563 EAL domain VCD_RS02905 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS02905 PF08448 PAS fold VCD_RS02910 PF04445 Putative SAM-dependent methyltransferase VCD_RS02920 PF00892 EamA-like transporter family VCD_RS02925 PF00582 Universal stress protein family VCD_RS02935 PF00210 Ferritin-like domain VCD_RS02940 PF10625 Universal stress protein B (UspB) VCD_RS02955 PF02646 RmuC family VCD_RS02960 PF01209 ubiE/COQ5 methyltransferase family VCD_RS02965 PF02036 SCP-2 sterol transfer family VCD_RS02970 PF03109 ABC1 family VCD_RS02975 PF02416 mttA/Hcf106 family VCD_RS02980 PF02416 mttA/Hcf106 family VCD_RS02985 PF00902 Sec-independent protein translocase protein (TatC) VCD_RS02990 PF00034 Cytochrome c VCD_RS02990 PF03150 Di-haem cytochrome c peroxidase VCD_RS02995 PF01554 MatE VCD_RS03005 PF01726 LexA DNA binding domain VCD_RS03005 PF00717 Peptidase S24-like VCD_RS03010 PF01553 Acyltransferase VCD_RS03015 PF01040 UbiA prenyltransferase family VCD_RS03020 PF04345 Chorismate lyase VCD_RS03030 PF03748 Flagellar basal body-associated protein FliL VCD_RS03035 PF00672 HAMP domain VCD_RS03035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS03035 PF02203 Tar ligand binding domain homologue VCD_RS03040 PF01694 Rhomboid family VCD_RS03040 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VCD_RS03045 PF00581 Rhodanese-like domain VCD_RS03055 PF01026 TatD related DNase VCD_RS03060 PF00490 Delta-aminolevulinic acid dehydratase VCD_RS03070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VCD_RS03070 PF01612 3'-5' exonuclease VCD_RS03070 PF01367 5'-3' exonuclease, C-terminal SAM fold VCD_RS03070 PF00476 DNA polymerase family A VCD_RS03075 PF01926 50S ribosome-binding GTPase VCD_RS03080 PF00034 Cytochrome c VCD_RS03090 PF04220 Der GTPase activator (YihI) VCD_RS03095 PF10675 Protein of unknown function (DUF2489) VCD_RS03100 PF06969 HemN C-terminal domain VCD_RS03100 PF04055 Radical SAM superfamily VCD_RS03105 PF07219 HemY protein N-terminus VCD_RS03110 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VCD_RS03115 PF02602 Uroporphyrinogen-III synthase HemD VCD_RS03120 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VCD_RS03120 PF03900 Porphobilinogen deaminase, C-terminal domain VCD_RS03130 PF01295 Adenylate cyclase, class-I VCD_RS03130 PF12633 Adenylate cyclase NT domain VCD_RS03135 PF01491 Frataxin-like domain VCD_RS03145 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VCD_RS03145 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VCD_RS03150 PF01678 Diaminopimelate epimerase VCD_RS03155 PF04340 Protein of unknown function, DUF484 VCD_RS03160 PF00589 Phage integrase family VCD_RS03160 PF02899 Phage integrase, N-terminal SAM-like domain VCD_RS03165 PF13419 Haloacid dehalogenase-like hydrolase VCD_RS03170 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS03170 PF10442 FIST C domain VCD_RS03170 PF08495 FIST N domain VCD_RS03170 PF00563 EAL domain VCD_RS03195 PF12146 Serine aminopeptidase, S33 VCD_RS03200 PF01810 LysE type translocator VCD_RS03205 PF08668 HDOD domain VCD_RS03205 PF00563 EAL domain VCD_RS03210 PF00210 Ferritin-like domain VCD_RS03250 PF00448 SRP54-type protein, GTPase domain VCD_RS03250 PF02881 SRP54-type protein, helical bundle domain VCD_RS03255 PF00005 ABC transporter VCD_RS03260 PF18075 FtsX extracellular domain VCD_RS03265 PF04545 Sigma-70, region 4 VCD_RS03265 PF04542 Sigma-70 region 2 VCD_RS03265 PF00140 Sigma-70 factor, region 1.2 VCD_RS03270 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_RS03270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCD_RS03275 PF00440 Bacterial regulatory proteins, tetR family VCD_RS03285 PF05958 tRNA (Uracil-5-)-methyltransferase VCD_RS03290 PF00593 TonB dependent receptor VCD_RS03290 PF07715 TonB-dependent Receptor Plug Domain VCD_RS03295 PF00082 Subtilase family VCD_RS03295 PF04151 Bacterial pre-peptidase C-terminal domain VCD_RS03295 PF05922 Peptidase inhibitor I9 VCD_RS03300 PF01177 Asp/Glu/Hydantoin racemase VCD_RS03350 PF00962 Adenosine/AMP deaminase VCD_RS03355 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS03355 PF13188 PAS domain VCD_RS03355 PF03707 Bacterial signalling protein N terminal repeat VCD_RS03355 PF00563 EAL domain VCD_RS03360 PF00158 Sigma-54 interaction domain VCD_RS03360 PF00072 Response regulator receiver domain VCD_RS03360 PF02954 Bacterial regulatory protein, Fis family VCD_RS03365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS03365 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS03365 PF00989 PAS fold VCD_RS03375 PF00120 Glutamine synthetase, catalytic domain VCD_RS03375 PF03951 Glutamine synthetase, beta-Grasp domain VCD_RS03385 PF03144 Elongation factor Tu domain 2 VCD_RS03385 PF00679 Elongation factor G C-terminus VCD_RS03385 PF00009 Elongation factor Tu GTP binding domain VCD_RS03395 PF03631 Virulence factor BrkB VCD_RS03400 PF02580 D-Tyr-tRNA(Tyr) deacylase VCD_RS03405 PF00583 Acetyltransferase (GNAT) family VCD_RS03405 PF09500 Putative thioesterase (yiiD_Cterm) VCD_RS03415 PF01293 Phosphoenolpyruvate carboxykinase VCD_RS03420 PF01430 Hsp33 protein VCD_RS03425 PF01479 S4 domain VCD_RS03430 PF11356 Type II secretion system protein C VCD_RS03435 PF00263 Bacterial type II and III secretion system protein VCD_RS03435 PF03958 Bacterial type II/III secretion system short domain VCD_RS03440 PF00437 Type II/IV secretion system protein VCD_RS03445 PF00482 Type II secretion system (T2SS), protein F VCD_RS03450 PF07963 Prokaryotic N-terminal methylation motif VCD_RS03450 PF08334 Type II secretion system (T2SS), protein G VCD_RS03455 PF12019 Type II transport protein GspH VCD_RS03460 PF02501 Type II secretion system (T2SS), protein I VCD_RS03460 PF07963 Prokaryotic N-terminal methylation motif VCD_RS03465 PF11612 Type II secretion system (T2SS), protein J VCD_RS03465 PF07963 Prokaryotic N-terminal methylation motif VCD_RS03470 PF03934 Type II secretion system (T2SS), protein K VCD_RS03475 PF05134 Type II secretion system (T2SS), protein L VCD_RS03475 PF12693 GspL periplasmic domain VCD_RS03480 PF04612 Type II secretion system (T2SS), protein M VCD_RS03485 PF01203 Type II secretion system (T2SS), protein N VCD_RS03490 PF00459 Inositol monophosphatase family VCD_RS03495 PF00293 NUDIX domain VCD_RS03500 PF01521 Iron-sulphur cluster biosynthesis VCD_RS03500 PF01106 NifU-like domain VCD_RS03505 PF00156 Phosphoribosyl transferase domain VCD_RS03510 PF00561 alpha/beta hydrolase fold VCD_RS03520 PF00575 S1 RNA binding domain VCD_RS03520 PF17674 HHH domain VCD_RS03520 PF16921 Tex protein YqgF-like domain VCD_RS03520 PF09371 Tex-like protein N-terminal domain VCD_RS03525 PF01272 Transcription elongation factor, GreA/GreB, C-term VCD_RS03525 PF03449 Transcription elongation factor, N-terminal VCD_RS03530 PF00486 Transcriptional regulatory protein, C terminal VCD_RS03530 PF00072 Response regulator receiver domain VCD_RS03535 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS03535 PF00672 HAMP domain VCD_RS03540 PF00860 Permease family VCD_RS03545 PF00270 DEAD/DEAH box helicase VCD_RS03545 PF00271 Helicase conserved C-terminal domain VCD_RS03545 PF17191 RecG wedge domain VCD_RS03550 PF13291 ACT domain VCD_RS03550 PF04607 Region found in RelA / SpoT proteins VCD_RS03550 PF02824 TGS domain VCD_RS03555 PF01192 RNA polymerase Rpb6 VCD_RS03560 PF00625 Guanylate kinase VCD_RS03565 PF02592 Putative vitamin uptake transporter VCD_RS03570 PF00474 Sodium:solute symporter family VCD_RS03580 PF02080 TrkA-C domain VCD_RS03580 PF00999 Sodium/hydrogen exchanger family VCD_RS03580 PF03471 Transporter associated domain VCD_RS03585 PF00196 Bacterial regulatory proteins, luxR family VCD_RS03585 PF00072 Response regulator receiver domain VCD_RS03590 PF11412 Disulphide bond corrector protein DsbC VCD_RS03590 PF02683 Cytochrome C biogenesis protein transmembrane region VCD_RS03595 PF11852 Domain of unknown function (DUF3372) VCD_RS03595 PF18494 Pullulanase Ins domain VCD_RS03595 PF03714 Bacterial pullanase-associated domain VCD_RS03595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VCD_RS03595 PF17967 Pullulanase N2 domain VCD_RS03605 PF03605 Anaerobic c4-dicarboxylate membrane transporter VCD_RS03610 PF10415 Fumarase C C-terminus VCD_RS03610 PF00206 Lyase VCD_RS03615 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS03615 PF17158 Membrane-associated sensor, integral membrane domain VCD_RS03620 PF04186 FxsA cytoplasmic membrane protein VCD_RS03625 PF00588 SpoU rRNA Methylase family VCD_RS03630 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VCD_RS03630 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VCD_RS03635 PF16527 Two-component sensor protein CpxA, periplasmic domain VCD_RS03635 PF00672 HAMP domain VCD_RS03635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS03635 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS03640 PF00486 Transcriptional regulatory protein, C terminal VCD_RS03640 PF00072 Response regulator receiver domain VCD_RS03650 PF01545 Cation efflux family VCD_RS03650 PF16916 Dimerisation domain of Zinc Transporter VCD_RS03655 PF00365 Phosphofructokinase VCD_RS03660 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VCD_RS03665 PF06005 Cell division protein ZapB VCD_RS03670 PF02219 Methylenetetrahydrofolate reductase VCD_RS03675 PF00742 Homoserine dehydrogenase VCD_RS03675 PF03447 Homoserine dehydrogenase, NAD binding domain VCD_RS03675 PF00696 Amino acid kinase family VCD_RS03680 PF01053 Cys/Met metabolism PLP-dependent enzyme VCD_RS03685 PF01340 Met Apo-repressor, MetJ VCD_RS03690 PF03949 Malic enzyme, NAD binding domain VCD_RS03690 PF00390 Malic enzyme, N-terminal domain VCD_RS03695 PF01197 Ribosomal protein L31 VCD_RS03700 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VCD_RS03700 PF18074 Primosomal protein N C-terminal domain VCD_RS03700 PF17764 3′ DNA-binding domain (3′BD) VCD_RS03700 PF00271 Helicase conserved C-terminal domain VCD_RS03700 PF00270 DEAD/DEAH box helicase VCD_RS03705 PF00356 Bacterial regulatory proteins, lacI family VCD_RS03710 PF05036 Sporulation related domain VCD_RS03715 PF00227 Proteasome subunit VCD_RS03720 PF07724 AAA domain (Cdc48 subfamily) VCD_RS03720 PF00004 ATPase family associated with various cellular activities (AAA) VCD_RS03720 PF10431 C-terminal, D2-small domain, of ClpB protein VCD_RS03725 PF01040 UbiA prenyltransferase family VCD_RS03730 PF03737 Aldolase/RraA VCD_RS03735 PF01554 MatE VCD_RS03740 PF00121 Triosephosphate isomerase VCD_RS03760 PF08220 DeoR-like helix-turn-helix domain VCD_RS03760 PF00455 DeoR C terminal sensor domain VCD_RS03765 PF00166 Chaperonin 10 Kd subunit VCD_RS03770 PF00118 TCP-1/cpn60 chaperonin family VCD_RS03780 PF04055 Radical SAM superfamily VCD_RS03785 PF09285 Elongation factor P, C-terminal VCD_RS03785 PF01132 Elongation factor P (EF-P) OB domain VCD_RS03785 PF08207 Elongation factor P (EF-P) KOW-like domain VCD_RS03790 PF02313 Fumarate reductase subunit D VCD_RS03795 PF02300 Fumarate reductase subunit C VCD_RS03800 PF13183 4Fe-4S dicluster domain VCD_RS03800 PF13085 2Fe-2S iron-sulfur cluster binding domain VCD_RS03805 PF02910 Fumarate reductase flavoprotein C-term VCD_RS03805 PF00890 FAD binding domain VCD_RS03810 PF00152 tRNA synthetases class II (D, K and N) VCD_RS03815 PF00581 Rhodanese-like domain VCD_RS03820 PF02556 Preprotein translocase subunit SecB VCD_RS03825 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VCD_RS03825 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VCD_RS03830 PF06426 Serine acetyltransferase, N-terminal VCD_RS03830 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_RS03840 PF00311 Phosphoenolpyruvate carboxylase VCD_RS03845 PF07687 Peptidase dimerisation domain VCD_RS03845 PF01546 Peptidase family M20/M25/M40 VCD_RS03850 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCD_RS03850 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCD_RS03855 PF00696 Amino acid kinase family VCD_RS03860 PF00764 Arginosuccinate synthase VCD_RS03865 PF00206 Lyase VCD_RS03865 PF14698 Argininosuccinate lyase C-terminal VCD_RS03875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCD_RS03875 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_RS03880 PF08534 Redoxin VCD_RS03880 PF00462 Glutaredoxin VCD_RS03885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS03885 PF03466 LysR substrate binding domain VCD_RS03890 PF17092 Penicillin-binding protein OB-like domain VCD_RS03890 PF00905 Penicillin binding protein transpeptidase domain VCD_RS03890 PF00912 Transglycosylase VCD_RS03910 PF04351 Pilus assembly protein, PilP VCD_RS03915 PF07660 Secretin and TonB N terminus short domain VCD_RS03915 PF03958 Bacterial type II/III secretion system short domain VCD_RS03915 PF11741 AMIN domain VCD_RS03915 PF00263 Bacterial type II and III secretion system protein VCD_RS03920 PF01202 Shikimate kinase VCD_RS03925 PF01761 3-dehydroquinate synthase VCD_RS03935 PF02086 D12 class N6 adenine-specific DNA methyltransferase VCD_RS03940 PF00834 Ribulose-phosphate 3 epimerase family VCD_RS03945 PF13419 Haloacid dehalogenase-like hydrolase VCD_RS03950 PF00579 tRNA synthetases class I (W and Y) VCD_RS03965 PF04055 Radical SAM superfamily VCD_RS03965 PF18693 TRAM domain VCD_RS03965 PF00919 Uncharacterized protein family UPF0004 VCD_RS03970 PF00117 Glutamine amidotransferase class-I VCD_RS03975 PF00202 Aminotransferase class-III VCD_RS03980 PF04958 Arginine N-succinyltransferase beta subunit VCD_RS03985 PF00171 Aldehyde dehydrogenase family VCD_RS03995 PF00027 Cyclic nucleotide-binding domain VCD_RS03995 PF13545 Crp-like helix-turn-helix domain VCD_RS04000 PF00485 Phosphoribulokinase / Uridine kinase family VCD_RS04005 PF06794 Uncharacterised protein family (UPF0270) VCD_RS04010 PF00561 alpha/beta hydrolase fold VCD_RS04020 PF12848 ABC transporter VCD_RS04020 PF00005 ABC transporter VCD_RS04025 PF02525 Flavodoxin-like fold VCD_RS04030 PF00999 Sodium/hydrogen exchanger family VCD_RS04030 PF02254 TrkA-N domain VCD_RS04040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCD_RS04045 PF01112 Asparaginase VCD_RS04050 PF00709 Adenylosuccinate synthetase VCD_RS04055 PF08238 Sel1 repeat VCD_RS04060 PF11893 Domain of unknown function (DUF3413) VCD_RS04060 PF00884 Sulfatase VCD_RS04065 PF00575 S1 RNA binding domain VCD_RS04065 PF00773 RNB domain VCD_RS04065 PF08206 Ribonuclease B OB domain VCD_RS04065 PF17876 Cold shock domain VCD_RS04065 PF08461 Ribonuclease R winged-helix domain VCD_RS04070 PF00588 SpoU rRNA Methylase family VCD_RS04070 PF08032 RNA 2'-O ribose methyltransferase substrate binding VCD_RS04075 PF00338 Ribosomal protein S10p/S20e VCD_RS04080 PF00297 Ribosomal protein L3 VCD_RS04085 PF00573 Ribosomal protein L4/L1 family VCD_RS04090 PF00276 Ribosomal protein L23 VCD_RS04095 PF00181 Ribosomal Proteins L2, RNA binding domain VCD_RS04095 PF03947 Ribosomal Proteins L2, C-terminal domain VCD_RS04100 PF00203 Ribosomal protein S19 VCD_RS04105 PF00237 Ribosomal protein L22p/L17e VCD_RS04110 PF00189 Ribosomal protein S3, C-terminal domain VCD_RS04110 PF07650 KH domain VCD_RS04115 PF00252 Ribosomal protein L16p/L10e VCD_RS04120 PF00831 Ribosomal L29 protein VCD_RS04125 PF00366 Ribosomal protein S17 VCD_RS04130 PF00238 Ribosomal protein L14p/L23e VCD_RS04135 PF00467 KOW motif VCD_RS04135 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VCD_RS04140 PF00281 Ribosomal protein L5 VCD_RS04140 PF00673 ribosomal L5P family C-terminus VCD_RS04145 PF00253 Ribosomal protein S14p/S29e VCD_RS04150 PF00410 Ribosomal protein S8 VCD_RS04155 PF00347 Ribosomal protein L6 VCD_RS04160 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VCD_RS04165 PF00333 Ribosomal protein S5, N-terminal domain VCD_RS04165 PF03719 Ribosomal protein S5, C-terminal domain VCD_RS04170 PF00327 Ribosomal protein L30p/L7e VCD_RS04175 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VCD_RS04180 PF00344 SecY translocase VCD_RS04185 PF00444 Ribosomal protein L36 VCD_RS04190 PF00416 Ribosomal protein S13/S18 VCD_RS04195 PF00411 Ribosomal protein S11 VCD_RS04200 PF00163 Ribosomal protein S4/S9 N-terminal domain VCD_RS04200 PF01479 S4 domain VCD_RS04205 PF01000 RNA polymerase Rpb3/RpoA insert domain VCD_RS04205 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VCD_RS04205 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VCD_RS04210 PF01196 Ribosomal protein L17 VCD_RS04220 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VCD_RS04220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCD_RS04225 PF08525 Opacity-associated protein A N-terminal motif VCD_RS04225 PF04225 Opacity-associated protein A LysM-like domain VCD_RS04230 PF00892 EamA-like transporter family VCD_RS04235 PF13673 Acetyltransferase (GNAT) domain VCD_RS04240 PF00271 Helicase conserved C-terminal domain VCD_RS04240 PF00270 DEAD/DEAH box helicase VCD_RS04240 PF03880 DbpA RNA binding domain VCD_RS04250 PF00149 Calcineurin-like phosphoesterase VCD_RS04250 PF02872 5'-nucleotidase, C-terminal domain VCD_RS04255 PF14824 Sirohaem biosynthesis protein central VCD_RS04255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCD_RS04255 PF10414 Sirohaem synthase dimerisation region VCD_RS04260 PF01507 Phosphoadenosine phosphosulfate reductase family VCD_RS04265 PF00009 Elongation factor Tu GTP binding domain VCD_RS04290 PF00005 ABC transporter VCD_RS04300 PF10795 Protein of unknown function (DUF2607) VCD_RS04305 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VCD_RS04310 PF01625 Peptide methionine sulfoxide reductase VCD_RS04315 PF17243 POTRA domain TamA domain 1 VCD_RS04315 PF07244 Surface antigen variable number repeat VCD_RS04315 PF01103 Surface antigen VCD_RS04320 PF04357 TamB, inner membrane protein subunit of TAM complex VCD_RS04325 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VCD_RS04330 PF00719 Inorganic pyrophosphatase VCD_RS04335 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VCD_RS04345 PF01225 Mur ligase family, catalytic domain VCD_RS04345 PF08245 Mur ligase middle domain VCD_RS04345 PF02875 Mur ligase family, glutamate ligase domain VCD_RS04350 PF02441 Flavoprotein VCD_RS04360 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS04365 PF00005 ABC transporter VCD_RS04370 PF04751 Protein of unknown function (DUF615) VCD_RS04375 PF01523 Putative modulator of DNA gyrase VCD_RS04380 PF03448 MgtE intracellular N domain VCD_RS04380 PF01769 Divalent cation transporter VCD_RS04380 PF00571 CBS domain VCD_RS04385 PF00381 PTS HPr component phosphorylation site VCD_RS04390 PF03668 P-loop ATPase protein family VCD_RS04395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCD_RS04400 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VCD_RS04405 PF00309 Sigma-54 factor, Activator interacting domain (AID) VCD_RS04405 PF04552 Sigma-54, DNA binding domain VCD_RS04405 PF04963 Sigma-54 factor, core binding domain VCD_RS04410 PF12399 Branched-chain amino acid ATP-binding cassette transporter VCD_RS04410 PF00005 ABC transporter VCD_RS04415 PF03968 OstA-like protein VCD_RS04430 PF00571 CBS domain VCD_RS04430 PF01380 SIS domain VCD_RS04435 PF01699 Sodium/calcium exchanger protein VCD_RS04445 PF00005 ABC transporter VCD_RS04450 PF02405 Permease MlaE VCD_RS04455 PF02470 MlaD protein VCD_RS04460 PF05494 MlaC protein VCD_RS04470 PF01722 BolA-like protein VCD_RS04475 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VCD_RS04480 PF01553 Acyltransferase VCD_RS04485 PF01042 Endoribonuclease L-PSP VCD_RS04490 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VCD_RS04490 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VCD_RS04495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VCD_RS04495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VCD_RS04505 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VCD_RS04505 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VCD_RS04510 PF13638 PIN domain VCD_RS04510 PF02562 PhoH-like protein VCD_RS04520 PF18339 RapA N-terminal Tudor like domain 1 VCD_RS04520 PF00176 SNF2 family N-terminal domain VCD_RS04520 PF12137 RNA polymerase recycling family C-terminal VCD_RS04520 PF18337 RapA N-terminal Tudor like domain VCD_RS04520 PF00271 Helicase conserved C-terminal domain VCD_RS04525 PF00849 RNA pseudouridylate synthase VCD_RS04530 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCD_RS04530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCD_RS04535 PF10458 Valyl tRNA synthetase tRNA binding arm VCD_RS04535 PF00133 tRNA synthetases class I (I, L, M and V) VCD_RS04535 PF08264 Anticodon-binding domain of tRNA VCD_RS04540 PF04364 DNA polymerase III chi subunit, HolC VCD_RS04545 PF02789 Cytosol aminopeptidase family, N-terminal domain VCD_RS04545 PF00883 Cytosol aminopeptidase family, catalytic domain VCD_RS04550 PF03739 Lipopolysaccharide export system permease LptF/LptG VCD_RS04555 PF03739 Lipopolysaccharide export system permease LptF/LptG VCD_RS04570 PF00072 Response regulator receiver domain VCD_RS04615 PF00694 Aconitase C-terminal domain VCD_RS04620 PF00330 Aconitase family (aconitate hydratase) VCD_RS04625 PF00180 Isocitrate/isopropylmalate dehydrogenase VCD_RS04630 PF08502 LeuA allosteric (dimerisation) domain VCD_RS04630 PF00682 HMGL-like VCD_RS04640 PF01569 PAP2 superfamily VCD_RS04650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS04650 PF03466 LysR substrate binding domain VCD_RS04655 PF00501 AMP-binding enzyme VCD_RS04660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCD_RS04660 PF00205 Thiamine pyrophosphate enzyme, central domain VCD_RS04660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCD_RS04665 PF10369 Small subunit of acetolactate synthase VCD_RS04670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCD_RS04670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCD_RS04670 PF01842 ACT domain VCD_RS04675 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VCD_RS04680 PF01812 5-formyltetrahydrofolate cyclo-ligase family VCD_RS04685 PF05164 Cell division protein ZapA VCD_RS04690 PF03695 Uncharacterised protein family (UPF0149) VCD_RS04695 PF01494 FAD binding domain VCD_RS04700 PF01494 FAD binding domain VCD_RS04715 PF03937 Flavinator of succinate dehydrogenase VCD_RS04725 PF00890 FAD binding domain VCD_RS04725 PF02910 Fumarate reductase flavoprotein C-term VCD_RS04735 PF04542 Sigma-70 region 2 VCD_RS04735 PF08281 Sigma-70, region 4 VCD_RS04740 PF03872 Anti sigma-E protein RseA, N-terminal domain VCD_RS04740 PF03873 Anti sigma-E protein RseA, C-terminal domain VCD_RS04745 PF03888 MucB/RseB N-terminal domain VCD_RS04745 PF17188 MucB/RseB C-terminal domain VCD_RS04755 PF06421 GTP-binding protein LepA C-terminus VCD_RS04755 PF03144 Elongation factor Tu domain 2 VCD_RS04755 PF00009 Elongation factor Tu GTP binding domain VCD_RS04755 PF00679 Elongation factor G C-terminus VCD_RS04760 PF10502 Signal peptidase, peptidase S26 VCD_RS04765 PF14622 Ribonuclease-III-like VCD_RS04765 PF00035 Double-stranded RNA binding motif VCD_RS04770 PF07650 KH domain VCD_RS04770 PF01926 50S ribosome-binding GTPase VCD_RS04775 PF02565 Recombination protein O C terminal VCD_RS04775 PF11967 Recombination protein O N terminal VCD_RS04780 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VCD_RS04785 PF01648 4'-phosphopantetheinyl transferase superfamily VCD_RS04800 PF00563 EAL domain VCD_RS04800 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS04805 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VCD_RS04805 PF00072 Response regulator receiver domain VCD_RS04805 PF00672 HAMP domain VCD_RS04805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS04805 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS04805 PF01627 Hpt domain VCD_RS04810 PF05958 tRNA (Uracil-5-)-methyltransferase VCD_RS04810 PF01938 TRAM domain VCD_RS04815 PF13291 ACT domain VCD_RS04815 PF04607 Region found in RelA / SpoT proteins VCD_RS04815 PF02824 TGS domain VCD_RS04820 PF03819 MazG nucleotide pyrophosphohydrolase domain VCD_RS04825 PF06418 CTP synthase N-terminus VCD_RS04825 PF00117 Glutamine amidotransferase class-I VCD_RS04830 PF00113 Enolase, C-terminal TIM barrel domain VCD_RS04830 PF03952 Enolase, N-terminal domain VCD_RS04835 PF01743 Poly A polymerase head domain VCD_RS04835 PF12627 Probable RNA and SrmB- binding site of polymerase A VCD_RS04835 PF01966 HD domain VCD_RS04840 PF01471 Putative peptidoglycan binding domain VCD_RS04840 PF13401 AAA domain VCD_RS04850 PF08239 Bacterial SH3 domain VCD_RS04855 PF01384 Phosphate transporter family VCD_RS04860 PF01865 Protein of unknown function DUF47 VCD_RS04865 PF01928 CYTH domain VCD_RS04870 PF02743 Cache domain VCD_RS04870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS04870 PF00672 HAMP domain VCD_RS04875 PF08335 GlnD PII-uridylyltransferase VCD_RS04875 PF03710 Glutamate-ammonia ligase adenylyltransferase VCD_RS04880 PF00294 pfkB family carbohydrate kinase VCD_RS04880 PF01467 Cytidylyltransferase-like VCD_RS04885 PF02321 Outer membrane efflux protein VCD_RS04890 PF00293 NUDIX domain VCD_RS04895 PF06853 Protein of unknown function (DUF1249) VCD_RS04900 PF00149 Calcineurin-like phosphoesterase VCD_RS04905 PF05728 Uncharacterised protein family (UPF0227) VCD_RS04910 PF00204 DNA gyrase B VCD_RS04910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS04910 PF00986 DNA gyrase B subunit, carboxyl terminus VCD_RS04910 PF01751 Toprim domain VCD_RS04915 PF00521 DNA gyrase/topoisomerase IV, subunit A VCD_RS04915 PF03989 DNA gyrase C-terminal domain, beta-propeller VCD_RS04920 PF03884 DNA gyrase inhibitor YacG VCD_RS04925 PF07072 Cell division protein VCD_RS04930 PF01121 Dephospho-CoA kinase VCD_RS04935 PF06750 Bacterial Peptidase A24 N-terminal domain VCD_RS04935 PF01478 Type IV leader peptidase family VCD_RS04940 PF00482 Type II secretion system (T2SS), protein F VCD_RS04945 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VCD_RS04945 PF00437 Type II/IV secretion system protein VCD_RS04950 PF07963 Prokaryotic N-terminal methylation motif VCD_RS04950 PF00114 Pilin (bacterial filament) VCD_RS04955 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VCD_RS04955 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VCD_RS04960 PF01510 N-acetylmuramoyl-L-alanine amidase VCD_RS04965 PF00258 Flavodoxin VCD_RS04970 PF02899 Phage integrase, N-terminal SAM-like domain VCD_RS04970 PF00589 Phage integrase family VCD_RS04975 PF10411 Disulfide bond isomerase protein N-terminus VCD_RS04975 PF13098 Thioredoxin-like domain VCD_RS04980 PF17768 RecJ OB domain VCD_RS04980 PF02272 DHHA1 domain VCD_RS04980 PF01368 DHH family VCD_RS04985 PF02872 5'-nucleotidase, C-terminal domain VCD_RS04985 PF00149 Calcineurin-like phosphoesterase VCD_RS04990 PF07729 FCD domain VCD_RS04990 PF00392 Bacterial regulatory proteins, gntR family VCD_RS04995 PF17831 Pyruvate dehydrogenase E1 component middle domain VCD_RS04995 PF00456 Transketolase, thiamine diphosphate binding domain VCD_RS05000 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VCD_RS05000 PF00364 Biotin-requiring enzyme VCD_RS05000 PF02817 e3 binding domain VCD_RS05005 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_RS05005 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCD_RS05010 PF01795 MraW methylase family VCD_RS05015 PF04999 Cell division protein FtsL VCD_RS05020 PF00905 Penicillin binding protein transpeptidase domain VCD_RS05020 PF03717 Penicillin-binding Protein dimerisation domain VCD_RS05025 PF08245 Mur ligase middle domain VCD_RS05025 PF02875 Mur ligase family, glutamate ligase domain VCD_RS05025 PF01225 Mur ligase family, catalytic domain VCD_RS05030 PF08245 Mur ligase middle domain VCD_RS05030 PF01225 Mur ligase family, catalytic domain VCD_RS05030 PF02875 Mur ligase family, glutamate ligase domain VCD_RS05035 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VCD_RS05035 PF00953 Glycosyl transferase family 4 VCD_RS05040 PF08245 Mur ligase middle domain VCD_RS05040 PF02875 Mur ligase family, glutamate ligase domain VCD_RS05045 PF01098 Cell cycle protein VCD_RS05050 PF04101 Glycosyltransferase family 28 C-terminal domain VCD_RS05050 PF03033 Glycosyltransferase family 28 N-terminal domain VCD_RS05055 PF02875 Mur ligase family, glutamate ligase domain VCD_RS05055 PF08245 Mur ligase middle domain VCD_RS05055 PF01225 Mur ligase family, catalytic domain VCD_RS05060 PF03799 Cell division protein FtsQ VCD_RS05060 PF08478 POTRA domain, FtsQ-type VCD_RS05065 PF02491 SHS2 domain inserted in FTSA VCD_RS05070 PF12327 FtsZ family, C-terminal domain VCD_RS05070 PF00091 Tubulin/FtsZ family, GTPase domain VCD_RS05075 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VCD_RS05085 PF07516 SecA Wing and Scaffold domain VCD_RS05085 PF02810 SEC-C motif VCD_RS05085 PF07517 SecA DEAD-like domain VCD_RS05085 PF01043 SecA preprotein cross-linking domain VCD_RS05095 PF00293 NUDIX domain VCD_RS05100 PF01113 Dihydrodipicolinate reductase, N-terminus VCD_RS05100 PF05173 Dihydrodipicolinate reductase, C-terminus VCD_RS05110 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VCD_RS05110 PF00117 Glutamine amidotransferase class-I VCD_RS05115 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VCD_RS05115 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCD_RS05115 PF02142 MGS-like domain VCD_RS05135 PF00005 ABC transporter VCD_RS05140 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VCD_RS05145 PF01925 Sulfite exporter TauE/SafE VCD_RS05150 PF03466 LysR substrate binding domain VCD_RS05150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS05155 PF03458 UPF0126 domain VCD_RS05160 PF01497 Periplasmic binding protein VCD_RS05170 PF01048 Phosphorylase superfamily VCD_RS05180 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_RS05180 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VCD_RS05185 PF04898 Glutamate synthase central domain VCD_RS05185 PF01493 GXGXG motif VCD_RS05185 PF01645 Conserved region in glutamate synthase VCD_RS05185 PF00310 Glutamine amidotransferases class-II VCD_RS05190 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_RS05190 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VCD_RS05195 PF00310 Glutamine amidotransferases class-II VCD_RS05195 PF04898 Glutamate synthase central domain VCD_RS05195 PF01645 Conserved region in glutamate synthase VCD_RS05195 PF01493 GXGXG motif VCD_RS05200 PF16199 Radical_SAM C-terminal domain VCD_RS05200 PF04055 Radical SAM superfamily VCD_RS05205 PF00563 EAL domain VCD_RS05205 PF00360 Phytochrome region VCD_RS05205 PF01590 GAF domain VCD_RS05205 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS05210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS05210 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS05210 PF18415 Histidine kinase receptor ArcB trans-membrane domain VCD_RS05210 PF01627 Hpt domain VCD_RS05210 PF00989 PAS fold VCD_RS05210 PF00072 Response regulator receiver domain VCD_RS05215 PF00486 Transcriptional regulatory protein, C terminal VCD_RS05215 PF00072 Response regulator receiver domain VCD_RS05225 PF03737 Aldolase/RraA VCD_RS05235 PF13840 ACT domain VCD_RS05235 PF01842 ACT domain VCD_RS05235 PF00696 Amino acid kinase family VCD_RS05235 PF00742 Homoserine dehydrogenase VCD_RS05235 PF03447 Homoserine dehydrogenase, NAD binding domain VCD_RS05240 PF00288 GHMP kinases N terminal domain VCD_RS05240 PF08544 GHMP kinases C terminal VCD_RS05245 PF14821 Threonine synthase N terminus VCD_RS05245 PF00291 Pyridoxal-phosphate dependent enzyme VCD_RS05250 PF01228 Glycine radical VCD_RS05255 PF01261 Xylose isomerase-like TIM barrel VCD_RS05260 PF03167 Uracil DNA glycosylase superfamily VCD_RS05275 PF01235 Sodium:alanine symporter family VCD_RS05280 PF03883 Peroxide stress protein YaaA VCD_RS05285 PF01026 TatD related DNase VCD_RS05290 PF07670 Nucleoside recognition VCD_RS05290 PF01773 Na+ dependent nucleoside transporter N-terminus VCD_RS05290 PF07662 Na+ dependent nucleoside transporter C-terminus VCD_RS05300 PF01791 DeoC/LacD family aldolase VCD_RS05305 PF00591 Glycosyl transferase family, a/b domain VCD_RS05305 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VCD_RS05305 PF02885 Glycosyl transferase family, helical bundle domain VCD_RS05310 PF01676 Metalloenzyme superfamily VCD_RS05315 PF01048 Phosphorylase superfamily VCD_RS05325 PF18429 Domain of unknown function (DUF5609) VCD_RS05335 PF18073 Rubredoxin metal binding domain VCD_RS05340 PF14492 Elongation Factor G, domain II VCD_RS05340 PF03144 Elongation factor Tu domain 2 VCD_RS05340 PF00009 Elongation factor Tu GTP binding domain VCD_RS05340 PF03764 Elongation factor G, domain IV VCD_RS05340 PF00679 Elongation factor G C-terminus VCD_RS05345 PF00501 AMP-binding enzyme VCD_RS05350 PF00072 Response regulator receiver domain VCD_RS05360 PF00703 Glycosyl hydrolases family 2 VCD_RS05360 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VCD_RS05360 PF02837 Glycosyl hydrolases family 2, sugar binding domain VCD_RS05360 PF02929 Beta galactosidase small chain VCD_RS05360 PF16353 Domain of unknown function(DUF4981) VCD_RS05365 PF00356 Bacterial regulatory proteins, lacI family VCD_RS05370 PF01588 Putative tRNA binding domain VCD_RS05380 PF01544 CorA-like Mg2+ transporter protein VCD_RS05385 PF02080 TrkA-C domain VCD_RS05385 PF18030 RimK PreATP-grasp domain VCD_RS05385 PF08443 RimK-like ATP-grasp domain VCD_RS05390 PF00583 Acetyltransferase (GNAT) family VCD_RS05400 PF14602 Hexapeptide repeat of succinyl-transferase VCD_RS05400 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VCD_RS05405 PF07130 YebG protein VCD_RS05420 PF17946 RecC C-terminal domain VCD_RS05425 PF00580 UvrD/REP helicase N-terminal domain VCD_RS05425 PF13361 UvrD-like helicase C-terminal domain VCD_RS05425 PF12705 PD-(D/E)XK nuclease superfamily VCD_RS05430 PF13538 UvrD-like helicase C-terminal domain VCD_RS05445 PF00583 Acetyltransferase (GNAT) family VCD_RS05445 PF00696 Amino acid kinase family VCD_RS05455 PF06725 3D domain VCD_RS05455 PF03562 MltA specific insert domain VCD_RS05460 PF00899 ThiF family VCD_RS05465 PF02657 Fe-S metabolism associated domain VCD_RS05470 PF00266 Aminotransferase class-V VCD_RS05475 PF01965 DJ-1/PfpI family VCD_RS05480 PF02558 Ketopantoate reductase PanE/ApbA VCD_RS05480 PF08546 Ketopantoate reductase PanE/ApbA C terminal VCD_RS05485 PF03502 Nucleoside-specific channel-forming protein, Tsx VCD_RS05495 PF04545 Sigma-70, region 4 VCD_RS05495 PF04542 Sigma-70 region 2 VCD_RS05505 PF07690 Major Facilitator Superfamily VCD_RS05510 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VCD_RS05520 PF05175 Methyltransferase small domain VCD_RS05525 PF01722 BolA-like protein VCD_RS05530 PF11973 NQRA C-terminal domain VCD_RS05530 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VCD_RS05535 PF03116 NQR2, RnfD, RnfE family VCD_RS05540 PF04205 FMN-binding domain VCD_RS05545 PF02508 Rnf-Nqr subunit, membrane protein VCD_RS05550 PF02508 Rnf-Nqr subunit, membrane protein VCD_RS05555 PF00111 2Fe-2S iron-sulfur cluster binding domain VCD_RS05555 PF00175 Oxidoreductase NAD-binding domain VCD_RS05555 PF00970 Oxidoreductase FAD-binding domain VCD_RS05560 PF02424 ApbE family VCD_RS05570 PF00817 impB/mucB/samB family VCD_RS05570 PF11798 IMS family HHH motif VCD_RS05585 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS05585 PF17158 Membrane-associated sensor, integral membrane domain VCD_RS05590 PF00209 Sodium:neurotransmitter symporter family VCD_RS05600 PF18030 RimK PreATP-grasp domain VCD_RS05600 PF08443 RimK-like ATP-grasp domain VCD_RS05605 PF08443 RimK-like ATP-grasp domain VCD_RS05605 PF18030 RimK PreATP-grasp domain VCD_RS05610 PF07687 Peptidase dimerisation domain VCD_RS05610 PF01546 Peptidase family M20/M25/M40 VCD_RS05615 PF00860 Permease family VCD_RS05620 PF00156 Phosphoribosyl transferase domain VCD_RS05625 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VCD_RS05630 PF07417 Sigma factor-binding transcriptional regulator Crl VCD_RS05635 PF00696 Amino acid kinase family VCD_RS05635 PF01472 PUA domain VCD_RS05640 PF00171 Aldehyde dehydrogenase family VCD_RS05645 PF03477 ATP cone domain VCD_RS05650 PF01872 RibD C-terminal domain VCD_RS05650 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCD_RS05655 PF00677 Lumazine binding domain VCD_RS05660 PF00925 GTP cyclohydrolase II VCD_RS05660 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VCD_RS05665 PF00885 6,7-dimethyl-8-ribityllumazine synthase VCD_RS05670 PF01029 NusB family VCD_RS05675 PF02769 AIR synthase related protein, C-terminal domain VCD_RS05675 PF00586 AIR synthase related protein, N-terminal domain VCD_RS05680 PF04608 Phosphatidylglycerophosphatase A VCD_RS05685 PF11944 Protein of unknown function (DUF3461) VCD_RS05690 PF01909 Nucleotidyltransferase domain VCD_RS05690 PF08335 GlnD PII-uridylyltransferase VCD_RS05690 PF01966 HD domain VCD_RS05695 PF00557 Metallopeptidase family M24 VCD_RS05700 PF00318 Ribosomal protein S2 VCD_RS05705 PF00889 Elongation factor TS VCD_RS05710 PF00696 Amino acid kinase family VCD_RS05715 PF01765 Ribosome recycling factor VCD_RS05720 PF01255 Putative undecaprenyl diphosphate synthase VCD_RS05730 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VCD_RS05730 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VCD_RS05730 PF13288 DXP reductoisomerase C-terminal domain VCD_RS05735 PF02163 Peptidase family M50 VCD_RS05735 PF17820 PDZ domain VCD_RS05740 PF01103 Surface antigen VCD_RS05740 PF07244 Surface antigen variable number repeat VCD_RS05745 PF03938 Outer membrane protein (OmpH-like) VCD_RS05750 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VCD_RS05750 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_RS05755 PF07977 FabA-like domain VCD_RS05760 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VCD_RS05760 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_RS05765 PF02684 Lipid-A-disaccharide synthetase VCD_RS05770 PF01351 Ribonuclease HII VCD_RS05775 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VCD_RS05775 PF14579 Helix-hairpin-helix motif VCD_RS05775 PF07733 Bacterial DNA polymerase III alpha NTPase domain VCD_RS05775 PF02811 PHP domain VCD_RS05775 PF01336 OB-fold nucleic acid binding domain VCD_RS05780 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VCD_RS05785 PF09179 TilS substrate binding domain VCD_RS05785 PF01171 PP-loop family VCD_RS05785 PF11734 TilS substrate C-terminal domain VCD_RS05790 PF00034 Cytochrome c VCD_RS05795 PF05870 Phenolic acid decarboxylase (PAD) VCD_RS05800 PF00543 Nitrogen regulatory protein P-II VCD_RS05805 PF03372 Endonuclease/Exonuclease/phosphatase family VCD_RS05810 PF01464 Transglycosylase SLT domain VCD_RS05810 PF01476 LysM domain VCD_RS05815 PF00753 Metallo-beta-lactamase superfamily VCD_RS05815 PF16123 Hydroxyacylglutathione hydrolase C-terminus VCD_RS05820 PF08241 Methyltransferase domain VCD_RS05825 PF00075 RNase H VCD_RS05830 PF00929 Exonuclease VCD_RS05840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VCD_RS05840 PF09317 Domain of unknown function (DUF1974) VCD_RS05840 PF02770 Acyl-CoA dehydrogenase, middle domain VCD_RS05840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VCD_RS05845 PF13580 SIS domain VCD_RS05850 PF13230 Glutamine amidotransferases class-II VCD_RS05855 PF00551 Formyl transferase VCD_RS05860 PF02769 AIR synthase related protein, C-terminal domain VCD_RS05860 PF00586 AIR synthase related protein, N-terminal domain VCD_RS05870 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS05875 PF01479 S4 domain VCD_RS05875 PF00849 RNA pseudouridylate synthase VCD_RS05880 PF01713 Smr domain VCD_RS05895 PF01963 TraB family VCD_RS05900 PF02838 Glycosyl hydrolase family 20, domain 2 VCD_RS05900 PF00728 Glycosyl hydrolase family 20, catalytic domain VCD_RS05900 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VCD_RS05900 PF03173 Putative carbohydrate binding domain VCD_RS05910 PF00403 Heavy-metal-associated domain VCD_RS05915 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCD_RS05920 PF01389 OmpA-like transmembrane domain VCD_RS05920 PF00691 OmpA family VCD_RS05930 PF07715 TonB-dependent Receptor Plug Domain VCD_RS05935 PF04954 Siderophore-interacting protein VCD_RS05935 PF08021 Siderophore-interacting FAD-binding domain VCD_RS05940 PF00668 Condensation domain VCD_RS05940 PF00550 Phosphopantetheine attachment site VCD_RS05940 PF00501 AMP-binding enzyme VCD_RS05940 PF08242 Methyltransferase domain VCD_RS05975 PF01584 CheW-like domain VCD_RS05975 PF00072 Response regulator receiver domain VCD_RS05980 PF03705 CheR methyltransferase, all-alpha domain VCD_RS05980 PF01739 CheR methyltransferase, SAM binding domain VCD_RS05985 PF00460 Flagella basal body rod protein VCD_RS05990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCD_RS05990 PF00460 Flagella basal body rod protein VCD_RS05995 PF03963 Flagellar hook capping protein - N-terminal region VCD_RS05995 PF13861 FlgD Tudor-like domain VCD_RS05995 PF13860 FlgD Ig-like domain VCD_RS06000 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCD_RS06000 PF00460 Flagella basal body rod protein VCD_RS06000 PF07559 Flagellar basal body protein FlaE VCD_RS06005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCD_RS06005 PF00460 Flagella basal body rod protein VCD_RS06010 PF00460 Flagella basal body rod protein VCD_RS06010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCD_RS06015 PF02107 Flagellar L-ring protein VCD_RS06020 PF02119 Flagellar P-ring protein VCD_RS06025 PF10135 Rod binding protein VCD_RS06025 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VCD_RS06030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VCD_RS06030 PF07196 Flagellin hook IN motif VCD_RS06045 PF07196 Flagellin hook IN motif VCD_RS06045 PF00669 Bacterial flagellin N-terminal helical region VCD_RS06045 PF00700 Bacterial flagellin C-terminal helical region VCD_RS06050 PF02899 Phage integrase, N-terminal SAM-like domain VCD_RS06050 PF00589 Phage integrase family VCD_RS06115 PF05840 Bacteriophage replication gene A protein (GPA) VCD_RS06275 PF07196 Flagellin hook IN motif VCD_RS06275 PF00700 Bacterial flagellin C-terminal helical region VCD_RS06275 PF00669 Bacterial flagellin N-terminal helical region VCD_RS06360 PF06071 Protein of unknown function (DUF933) VCD_RS06360 PF01926 50S ribosome-binding GTPase VCD_RS06365 PF01195 Peptidyl-tRNA hydrolase VCD_RS06370 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VCD_RS06370 PF14572 Phosphoribosyl synthetase-associated domain VCD_RS06375 PF08544 GHMP kinases C terminal VCD_RS06375 PF00288 GHMP kinases N terminal domain VCD_RS06380 PF03550 Outer membrane lipoprotein LolB VCD_RS06385 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VCD_RS06385 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VCD_RS06385 PF01488 Shikimate / quinate 5-dehydrogenase VCD_RS06390 PF03462 PCRF domain VCD_RS06390 PF00472 RF-1 domain VCD_RS06395 PF17827 PrmC N-terminal domain VCD_RS06395 PF13847 Methyltransferase domain VCD_RS06400 PF04247 Invasion gene expression up-regulator, SirB VCD_RS06405 PF13369 Transglutaminase-like superfamily VCD_RS06410 PF00793 DAHP synthetase I family VCD_RS06415 PF02872 5'-nucleotidase, C-terminal domain VCD_RS06415 PF00149 Calcineurin-like phosphoesterase VCD_RS06420 PF04073 Aminoacyl-tRNA editing domain VCD_RS06425 PF00860 Permease family VCD_RS06440 PF03358 NADPH-dependent FMN reductase VCD_RS06445 PF03960 ArsC family VCD_RS06450 PF01435 Peptidase family M48 VCD_RS06450 PF13181 Tetratricopeptide repeat VCD_RS06460 PF01594 AI-2E family transporter VCD_RS06465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS06465 PF02743 Cache domain VCD_RS06465 PF00672 HAMP domain VCD_RS06470 PF00578 AhpC/TSA family VCD_RS06480 PF00701 Dihydrodipicolinate synthetase family VCD_RS06485 PF06804 NlpB/DapX lipoprotein VCD_RS06495 PF02557 D-alanyl-D-alanine carboxypeptidase VCD_RS06500 PF01546 Peptidase family M20/M25/M40 VCD_RS06500 PF07687 Peptidase dimerisation domain VCD_RS06505 PF03960 ArsC family VCD_RS06520 PF11143 Protein of unknown function (DUF2919) VCD_RS06525 PF04261 Dyp-type peroxidase family VCD_RS06530 PF00669 Bacterial flagellin N-terminal helical region VCD_RS06530 PF07196 Flagellin hook IN motif VCD_RS06530 PF00700 Bacterial flagellin C-terminal helical region VCD_RS06535 PF00669 Bacterial flagellin N-terminal helical region VCD_RS06535 PF00700 Bacterial flagellin C-terminal helical region VCD_RS06535 PF07196 Flagellin hook IN motif VCD_RS06540 PF00700 Bacterial flagellin C-terminal helical region VCD_RS06540 PF07196 Flagellin hook IN motif VCD_RS06540 PF00669 Bacterial flagellin N-terminal helical region VCD_RS06545 PF03646 FlaG protein VCD_RS06550 PF02465 Flagellar hook-associated protein 2 N-terminus VCD_RS06550 PF07196 Flagellin hook IN motif VCD_RS06550 PF07195 Flagellar hook-associated protein 2 C-terminus VCD_RS06560 PF02561 Flagellar protein FliS VCD_RS06565 PF00158 Sigma-54 interaction domain VCD_RS06565 PF02954 Bacterial regulatory protein, Fis family VCD_RS06565 PF06490 Flagellar regulatory protein FleQ VCD_RS06570 PF13188 PAS domain VCD_RS06570 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS06570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS06575 PF00072 Response regulator receiver domain VCD_RS06575 PF02954 Bacterial regulatory protein, Fis family VCD_RS06575 PF00158 Sigma-54 interaction domain VCD_RS06580 PF02049 Flagellar hook-basal body complex protein FliE VCD_RS06585 PF08345 Flagellar M-ring protein C-terminal VCD_RS06585 PF01514 Secretory protein of YscJ/FliF family VCD_RS06590 PF14841 FliG middle domain VCD_RS06590 PF14842 FliG N-terminal domain VCD_RS06590 PF01706 FliG C-terminal domain VCD_RS06595 PF02108 Flagellar assembly protein FliH VCD_RS06600 PF18269 T3SS EscN ATPase C-terminal domain VCD_RS06600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCD_RS06615 PF03748 Flagellar basal body-associated protein FliL VCD_RS06620 PF02154 Flagellar motor switch protein FliM VCD_RS06620 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VCD_RS06625 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VCD_RS06630 PF04347 Flagellar biosynthesis protein, FliO VCD_RS06635 PF00813 FliP family VCD_RS06640 PF01313 Bacterial export proteins, family 3 VCD_RS06645 PF01311 Bacterial export proteins, family 1 VCD_RS06650 PF01312 FlhB HrpN YscU SpaS Family VCD_RS06655 PF01713 Smr domain VCD_RS06660 PF05175 Methyltransferase small domain VCD_RS06670 PF01264 Chorismate synthase VCD_RS06675 PF03458 UPF0126 domain VCD_RS06680 PF04315 Elongation factor P hydroxylase VCD_RS06685 PF08891 YfcL protein VCD_RS06690 PF03358 NADPH-dependent FMN reductase VCD_RS06695 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VCD_RS06695 PF01266 FAD dependent oxidoreductase VCD_RS06700 PF02801 Beta-ketoacyl synthase, C-terminal domain VCD_RS06700 PF00109 Beta-ketoacyl synthase, N-terminal domain VCD_RS06705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VCD_RS06705 PF11890 Domain of unknown function (DUF3410) VCD_RS06705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VCD_RS06710 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCD_RS06710 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCD_RS06715 PF01475 Ferric uptake regulator family VCD_RS06725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS06725 PF03466 LysR substrate binding domain VCD_RS06730 PF03788 LrgA family VCD_RS06735 PF04172 LrgB-like family VCD_RS06740 PF00258 Flavodoxin VCD_RS06750 PF12697 Alpha/beta hydrolase family VCD_RS06755 PF17206 SeqA protein N-terminal domain VCD_RS06755 PF03925 SeqA protein C-terminal domain VCD_RS06760 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCD_RS06760 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCD_RS06760 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCD_RS06760 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCD_RS06770 PF01784 NIF3 (NGG1p interacting factor 3) VCD_RS06775 PF00285 Citrate synthase, C-terminal domain VCD_RS06780 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VCD_RS06785 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VCD_RS06790 PF02910 Fumarate reductase flavoprotein C-term VCD_RS06790 PF00890 FAD binding domain VCD_RS06795 PF13085 2Fe-2S iron-sulfur cluster binding domain VCD_RS06800 PF00676 Dehydrogenase E1 component VCD_RS06800 PF16870 2-oxoglutarate dehydrogenase C-terminal VCD_RS06800 PF02779 Transketolase, pyrimidine binding domain VCD_RS06800 PF16078 2-oxoglutarate dehydrogenase N-terminus VCD_RS06805 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VCD_RS06805 PF02817 e3 binding domain VCD_RS06805 PF00364 Biotin-requiring enzyme VCD_RS06810 PF00549 CoA-ligase VCD_RS06810 PF08442 ATP-grasp domain VCD_RS06815 PF02629 CoA binding domain VCD_RS06815 PF00549 CoA-ligase VCD_RS06820 PF00950 ABC 3 transport family VCD_RS06825 PF00005 ABC transporter VCD_RS06830 PF01297 Zinc-uptake complex component A periplasmic VCD_RS06835 PF12833 Helix-turn-helix domain VCD_RS06835 PF02311 AraC-like ligand binding domain VCD_RS06840 PF04023 FeoA domain VCD_RS06845 PF07670 Nucleoside recognition VCD_RS06845 PF02421 Ferrous iron transport protein B VCD_RS06845 PF07664 Ferrous iron transport protein B C terminus VCD_RS06860 PF03485 Arginyl tRNA synthetase N terminal domain VCD_RS06860 PF00750 tRNA synthetases class I (R) VCD_RS06860 PF05746 DALR anticodon binding domain VCD_RS06870 PF00675 Insulinase (Peptidase family M16) VCD_RS06870 PF05193 Peptidase M16 inactive domain VCD_RS06875 PF00300 Histidine phosphatase superfamily (branch 1) VCD_RS06880 PF00771 FHIPEP family VCD_RS06885 PF00448 SRP54-type protein, GTPase domain VCD_RS06890 PF10609 NUBPL iron-transfer P-loop NTPase VCD_RS06895 PF04545 Sigma-70, region 4 VCD_RS06895 PF04539 Sigma-70 region 3 VCD_RS06895 PF04542 Sigma-70 region 2 VCD_RS06900 PF00072 Response regulator receiver domain VCD_RS06905 PF04344 Chemotaxis phosphatase, CheZ VCD_RS06910 PF00072 Response regulator receiver domain VCD_RS06910 PF01627 Hpt domain VCD_RS06910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS06910 PF02895 Signal transducing histidine kinase, homodimeric domain VCD_RS06910 PF01584 CheW-like domain VCD_RS06915 PF00072 Response regulator receiver domain VCD_RS06915 PF01339 CheB methylesterase VCD_RS06920 PF13614 AAA domain VCD_RS06930 PF01584 CheW-like domain VCD_RS06940 PF00005 ABC transporter VCD_RS06945 PF03379 CcmB protein VCD_RS06950 PF01578 Cytochrome C assembly protein VCD_RS06955 PF04995 Heme exporter protein D (CcmD) VCD_RS06960 PF03100 CcmE VCD_RS06965 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VCD_RS06965 PF01578 Cytochrome C assembly protein VCD_RS06970 PF08534 Redoxin VCD_RS06975 PF03918 Cytochrome C biogenesis protein VCD_RS06985 PF04333 MlaA lipoprotein VCD_RS07000 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VCD_RS07000 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VCD_RS07005 PF00462 Glutaredoxin VCD_RS07010 PF01751 Toprim domain VCD_RS07010 PF01131 DNA topoisomerase VCD_RS07015 PF00850 Histone deacetylase domain VCD_RS07030 PF11893 Domain of unknown function (DUF3413) VCD_RS07030 PF00884 Sulfatase VCD_RS07035 PF07208 Protein of unknown function (DUF1414) VCD_RS07040 PF04245 37-kD nucleoid-associated bacterial protein VCD_RS07050 PF03553 Na+/H+ antiporter family VCD_RS07055 PF02774 Semialdehyde dehydrogenase, dimerisation domain VCD_RS07055 PF01118 Semialdehyde dehydrogenase, NAD binding domain VCD_RS07060 PF01914 MarC family integral membrane protein VCD_RS07065 PF00465 Iron-containing alcohol dehydrogenase VCD_RS07065 PF00171 Aldehyde dehydrogenase family VCD_RS07075 PF00916 Sulfate permease family VCD_RS07075 PF01740 STAS domain VCD_RS07080 PF10150 Ribonuclease E/G family VCD_RS07080 PF12111 Polyribonucleotide phosphorylase C terminal VCD_RS07080 PF00575 S1 RNA binding domain VCD_RS07095 PF00849 RNA pseudouridylate synthase VCD_RS07095 PF01479 S4 domain VCD_RS07100 PF02545 Maf-like protein VCD_RS07105 PF02620 Large ribosomal RNA subunit accumulation protein YceD VCD_RS07110 PF01783 Ribosomal L32p protein family VCD_RS07115 PF02504 Fatty acid synthesis protein VCD_RS07120 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VCD_RS07120 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VCD_RS07125 PF00698 Acyl transferase domain VCD_RS07135 PF00550 Phosphopantetheine attachment site VCD_RS07140 PF02801 Beta-ketoacyl synthase, C-terminal domain VCD_RS07140 PF00109 Beta-ketoacyl synthase, N-terminal domain VCD_RS07145 PF01063 Amino-transferase class IV VCD_RS07150 PF02618 YceG-like family VCD_RS07155 PF02223 Thymidylate kinase VCD_RS07160 PF09115 DNA polymerase III, delta subunit, C terminal VCD_RS07165 PF01026 TatD related DNase VCD_RS07170 PF02378 Phosphotransferase system, EIIC VCD_RS07170 PF00367 phosphotransferase system, EIIB VCD_RS07175 PF00209 Sodium:neurotransmitter symporter family VCD_RS07190 PF01734 Patatin-like phospholipase VCD_RS07195 PF00224 Pyruvate kinase, barrel domain VCD_RS07195 PF02887 Pyruvate kinase, alpha/beta domain VCD_RS07200 PF00480 ROK family VCD_RS07205 PF01584 CheW-like domain VCD_RS07205 PF00072 Response regulator receiver domain VCD_RS07220 PF13847 Methyltransferase domain VCD_RS07230 PF01263 Aldose 1-epimerase VCD_RS07235 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCD_RS07235 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCD_RS07240 PF01641 SelR domain VCD_RS07250 PF07023 Protein of unknown function (DUF1315) VCD_RS07255 PF00710 Asparaginase, N-terminal VCD_RS07255 PF17763 Glutaminase/Asparaginase C-terminal domain VCD_RS07260 PF01343 Peptidase family S49 VCD_RS07265 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VCD_RS07265 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_RS07270 PF01842 ACT domain VCD_RS07270 PF00551 Formyl transferase VCD_RS07280 PF13307 Helicase C-terminal domain VCD_RS07280 PF04851 Type III restriction enzyme, res subunit VCD_RS07285 PF00814 Glycoprotease family VCD_RS07300 PF00561 alpha/beta hydrolase fold VCD_RS07305 PF00501 AMP-binding enzyme VCD_RS07305 PF13193 AMP-binding enzyme C-terminal domain VCD_RS07310 PF01612 3'-5' exonuclease VCD_RS07310 PF00570 HRDC domain VCD_RS07330 PF01966 HD domain VCD_RS07330 PF13286 Phosphohydrolase-associated domain VCD_RS07340 PF00155 Aminotransferase class I and II VCD_RS07345 PF00425 chorismate binding enzyme VCD_RS07350 PF16582 Middle domain of thiamine pyrophosphate VCD_RS07350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCD_RS07350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCD_RS07355 PF12697 Alpha/beta hydrolase family VCD_RS07360 PF00378 Enoyl-CoA hydratase/isomerase VCD_RS07365 PF13378 Enolase C-terminal domain-like VCD_RS07370 PF00501 AMP-binding enzyme VCD_RS07370 PF13193 AMP-binding enzyme C-terminal domain VCD_RS07375 PF03594 Benzoate membrane transport protein VCD_RS07380 PF01381 Helix-turn-helix VCD_RS07380 PF07883 Cupin domain VCD_RS07385 PF00672 HAMP domain VCD_RS07385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS07385 PF12729 Four helix bundle sensory module for signal transduction VCD_RS07395 PF07690 Major Facilitator Superfamily VCD_RS07415 PF04170 NlpE N-terminal domain VCD_RS07420 PF03776 Septum formation topological specificity factor MinE VCD_RS07425 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VCD_RS07430 PF05209 Septum formation inhibitor MinC, N-terminal domain VCD_RS07430 PF03775 Septum formation inhibitor MinC, C-terminal domain VCD_RS07435 PF05166 YcgL domain VCD_RS07440 PF13406 Transglycosylase SLT domain VCD_RS07445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS07445 PF03466 LysR substrate binding domain VCD_RS07450 PF07670 Nucleoside recognition VCD_RS07450 PF07662 Na+ dependent nucleoside transporter C-terminus VCD_RS07450 PF01773 Na+ dependent nucleoside transporter N-terminus VCD_RS07455 PF00704 Glycosyl hydrolases family 18 VCD_RS07460 PF03264 NapC/NirT cytochrome c family, N-terminal region VCD_RS07465 PF00384 Molybdopterin oxidoreductase VCD_RS07465 PF01568 Molydopterin dinucleotide binding domain VCD_RS07465 PF18364 Molybdopterin oxidoreductase N-terminal domain VCD_RS07475 PF03466 LysR substrate binding domain VCD_RS07475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS07480 PF01494 FAD binding domain VCD_RS07485 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VCD_RS07490 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VCD_RS07490 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VCD_RS07535 PF03707 Bacterial signalling protein N terminal repeat VCD_RS07535 PF00563 EAL domain VCD_RS07535 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS07535 PF13188 PAS domain VCD_RS07550 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VCD_RS07555 PF03480 Bacterial extracellular solute-binding protein, family 7 VCD_RS07560 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VCD_RS07565 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCD_RS07570 PF00158 Sigma-54 interaction domain VCD_RS07570 PF02954 Bacterial regulatory protein, Fis family VCD_RS07570 PF00072 Response regulator receiver domain VCD_RS07575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS07575 PF02743 Cache domain VCD_RS07575 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS07585 PF05697 Bacterial trigger factor protein (TF) VCD_RS07585 PF05698 Bacterial trigger factor protein (TF) C-terminus VCD_RS07585 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCD_RS07590 PF00574 Clp protease VCD_RS07595 PF07724 AAA domain (Cdc48 subfamily) VCD_RS07595 PF10431 C-terminal, D2-small domain, of ClpB protein VCD_RS07595 PF06689 ClpX C4-type zinc finger VCD_RS07600 PF00004 ATPase family associated with various cellular activities (AAA) VCD_RS07600 PF02190 ATP-dependent protease La (LON) substrate-binding domain VCD_RS07600 PF05362 Lon protease (S16) C-terminal proteolytic domain VCD_RS07605 PF00216 Bacterial DNA-binding protein VCD_RS07610 PF13145 PPIC-type PPIASE domain VCD_RS07620 PF02224 Cytidylate kinase VCD_RS07625 PF00575 S1 RNA binding domain VCD_RS07630 PF00216 Bacterial DNA-binding protein VCD_RS07635 PF06305 Lipopolysaccharide assembly protein A domain VCD_RS07640 PF18073 Rubredoxin metal binding domain VCD_RS07645 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VCD_RS07650 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VCD_RS07660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS07660 PF03466 LysR substrate binding domain VCD_RS07670 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VCD_RS07670 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VCD_RS07675 PF01037 Lrp/AsnC ligand binding domain VCD_RS07680 PF01580 FtsK/SpoIIIE family VCD_RS07680 PF09397 Ftsk gamma domain VCD_RS07680 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VCD_RS07680 PF17854 FtsK alpha domain VCD_RS07685 PF02600 Disulfide bond formation protein DsbB VCD_RS07690 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VCD_RS07695 PF07840 FadR C-terminal domain VCD_RS07695 PF00392 Bacterial regulatory proteins, gntR family VCD_RS07705 PF00672 HAMP domain VCD_RS07705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS07710 PF01230 HIT domain VCD_RS07725 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VCD_RS07725 PF13036 Peptidoglycan-synthase activator LpoB VCD_RS07735 PF05728 Uncharacterised protein family (UPF0227) VCD_RS07740 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_RS07750 PF16458 Beta-prism lectin VCD_RS07750 PF12563 Hemolytic toxin N terminal VCD_RS07750 PF07968 Leukocidin/Hemolysin toxin family VCD_RS07760 PF03461 TRCF domain VCD_RS07760 PF00270 DEAD/DEAH box helicase VCD_RS07760 PF00271 Helicase conserved C-terminal domain VCD_RS07760 PF02559 CarD-like/TRCF domain VCD_RS07760 PF17757 UvrB interaction domain VCD_RS07770 PF02687 FtsX-like permease family VCD_RS07770 PF12704 MacB-like periplasmic core domain VCD_RS07775 PF00005 ABC transporter VCD_RS07780 PF02687 FtsX-like permease family VCD_RS07780 PF12704 MacB-like periplasmic core domain VCD_RS07790 PF13567 Domain of unknown function (DUF4131) VCD_RS07790 PF00753 Metallo-beta-lactamase superfamily VCD_RS07790 PF03772 Competence protein VCD_RS07795 PF00005 ABC transporter VCD_RS07795 PF00664 ABC transporter transmembrane region VCD_RS07800 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VCD_RS07805 PF03966 Trm112p-like protein VCD_RS07810 PF02348 Cytidylyltransferase VCD_RS07815 PF04293 SpoVR like protein VCD_RS07820 PF04285 Protein of unknown function (DUF444) VCD_RS07825 PF06798 PrkA serine protein kinase C-terminal domain VCD_RS07825 PF08298 PrkA AAA domain VCD_RS07830 PF03887 YfbU domain VCD_RS07840 PF04055 Radical SAM superfamily VCD_RS07845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS07845 PF12729 Four helix bundle sensory module for signal transduction VCD_RS07845 PF00672 HAMP domain VCD_RS07855 PF02901 Pyruvate formate lyase-like VCD_RS07855 PF01228 Glycine radical VCD_RS07865 PF00005 ABC transporter VCD_RS07870 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_RS07875 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS07880 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS07885 PF03372 Endonuclease/Exonuclease/phosphatase family VCD_RS07930 PF11867 Domain of unknown function (DUF3387) VCD_RS07930 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCD_RS07930 PF18766 SWI2/SNF2 ATPase VCD_RS07940 PF02384 N-6 DNA Methylase VCD_RS07955 PF13657 HipA N-terminal domain VCD_RS07955 PF07804 HipA-like C-terminal domain VCD_RS07970 PF00672 HAMP domain VCD_RS07970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS07975 PF10689 Protein of unknown function (DUF2496) VCD_RS07980 PF07445 Primosomal replication protein priC VCD_RS07985 PF01925 Sulfite exporter TauE/SafE VCD_RS07990 PF06733 DEAD_2 VCD_RS07990 PF13307 Helicase C-terminal domain VCD_RS07995 PF13609 Gram-negative porin VCD_RS08000 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VCD_RS08005 PF02810 SEC-C motif VCD_RS08010 PF08668 HDOD domain VCD_RS08010 PF00563 EAL domain VCD_RS08015 PF00149 Calcineurin-like phosphoesterase VCD_RS08020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VCD_RS08025 PF01406 tRNA synthetases class I (C) catalytic domain VCD_RS08025 PF09190 DALR domain VCD_RS08030 PF02075 Crossover junction endodeoxyribonuclease RuvC VCD_RS08035 PF07499 RuvA, C-terminal domain VCD_RS08035 PF01330 RuvA N terminal domain VCD_RS08040 PF17864 RuvB AAA lid domain VCD_RS08040 PF05496 Holliday junction DNA helicase RuvB P-loop domain VCD_RS08040 PF05491 RuvB C-terminal winged helix domain VCD_RS08045 PF01654 Cytochrome bd terminal oxidase subunit I VCD_RS08050 PF02322 Cytochrome bd terminal oxidase subunit II VCD_RS08055 PF08173 Membrane bound YbgT-like protein VCD_RS08060 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) VCD_RS08065 PF03061 Thioesterase superfamily VCD_RS08070 PF01618 MotA/TolQ/ExbB proton channel family VCD_RS08075 PF02472 Biopolymer transport protein ExbD/TolR VCD_RS08085 PF07676 WD40-like Beta Propeller Repeat VCD_RS08085 PF04052 TolB amino-terminal domain VCD_RS08090 PF00691 OmpA family VCD_RS08100 PF02445 Quinolinate synthetase A protein VCD_RS08110 PF00072 Response regulator receiver domain VCD_RS08110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS08110 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS08110 PF09308 LuxQ, periplasmic VCD_RS08115 PF06610 L-alanine exporter VCD_RS08120 PF01238 Phosphomannose isomerase type I VCD_RS08125 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VCD_RS08125 PF02378 Phosphotransferase system, EIIC VCD_RS08125 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCD_RS08130 PF12833 Helix-turn-helix domain VCD_RS08140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCD_RS08160 PF00171 Aldehyde dehydrogenase family VCD_RS08165 PF00158 Sigma-54 interaction domain VCD_RS08165 PF01590 GAF domain VCD_RS08165 PF02954 Bacterial regulatory protein, Fis family VCD_RS08170 PF09905 DNA-binding protein VF530 VCD_RS08180 PF00875 DNA photolyase VCD_RS08180 PF03441 FAD binding domain of DNA photolyase VCD_RS08255 PF00005 ABC transporter VCD_RS08300 PF01527 Transposase VCD_RS08305 PF00665 Integrase core domain VCD_RS08315 PF04002 RadC-like JAB domain VCD_RS08325 PF09264 Vibrio cholerae sialidase, lectin insertion VCD_RS08325 PF13088 BNR repeat-like domain VCD_RS08330 PF01979 Amidohydrolase family VCD_RS08335 PF00480 ROK family VCD_RS08340 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VCD_RS08350 PF03480 Bacterial extracellular solute-binding protein, family 7 VCD_RS08355 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VCD_RS08360 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCD_RS08365 PF00701 Dihydrodipicolinate synthetase family VCD_RS08370 PF01418 Helix-turn-helix domain, rpiR family VCD_RS08370 PF01380 SIS domain VCD_RS08375 PF01344 Kelch motif VCD_RS08380 PF07646 Kelch motif VCD_RS08400 PF02384 N-6 DNA Methylase VCD_RS08420 PF11867 Domain of unknown function (DUF3387) VCD_RS08420 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCD_RS08420 PF18766 SWI2/SNF2 ATPase VCD_RS08485 PF18766 SWI2/SNF2 ATPase VCD_RS08485 PF11867 Domain of unknown function (DUF3387) VCD_RS08485 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCD_RS08495 PF02384 N-6 DNA Methylase VCD_RS08510 PF13657 HipA N-terminal domain VCD_RS08510 PF07804 HipA-like C-terminal domain VCD_RS08525 PF12419 SNF2 Helicase protein VCD_RS08525 PF00176 SNF2 family N-terminal domain VCD_RS08525 PF00271 Helicase conserved C-terminal domain VCD_RS08535 PF13356 Arm DNA-binding domain VCD_RS08535 PF00589 Phage integrase family VCD_RS08545 PF00873 AcrB/AcrD/AcrF family VCD_RS08550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_RS08560 PF02470 MlaD protein VCD_RS08565 PF04403 Paraquat-inducible protein A VCD_RS08570 PF00924 Mechanosensitive ion channel VCD_RS08570 PF05552 Conserved TM helix VCD_RS08595 PF00440 Bacterial regulatory proteins, tetR family VCD_RS08595 PF08362 YcdC-like protein, C-terminal region VCD_RS08600 PF00171 Aldehyde dehydrogenase family VCD_RS08605 PF07383 Protein of unknown function (DUF1496) VCD_RS08615 PF00440 Bacterial regulatory proteins, tetR family VCD_RS08615 PF16295 Tetracyclin repressor-like, C-terminal domain VCD_RS08620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VCD_RS08620 PF09317 Domain of unknown function (DUF1974) VCD_RS08620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VCD_RS08620 PF02770 Acyl-CoA dehydrogenase, middle domain VCD_RS08625 PF12241 Trans-2-enoyl-CoA reductase catalytic region VCD_RS08625 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VCD_RS08625 PF07055 Enoyl reductase FAD binding domain VCD_RS08630 PF01176 Translation initiation factor 1A / IF-1 VCD_RS08635 PF04376 Arginine-tRNA-protein transferase, N terminus VCD_RS08635 PF04377 Arginine-tRNA-protein transferase, C terminus VCD_RS08640 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VCD_RS08650 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VCD_RS08655 PF10692 Protein of unknown function (DUF2498) VCD_RS08660 PF08272 Topoisomerase I zinc-ribbon-like VCD_RS08660 PF01131 DNA topoisomerase VCD_RS08660 PF01751 Toprim domain VCD_RS08660 PF01396 Topoisomerase DNA binding C4 zinc finger VCD_RS08665 PF00483 Nucleotidyl transferase VCD_RS08670 PF00534 Glycosyl transferases group 1 VCD_RS08670 PF08323 Starch synthase catalytic domain VCD_RS08690 PF04993 TfoX N-terminal domain VCD_RS08690 PF04994 TfoX C-terminal domain VCD_RS08695 PF00356 Bacterial regulatory proteins, lacI family VCD_RS08700 PF02613 Nitrate reductase delta subunit VCD_RS08705 PF00486 Transcriptional regulatory protein, C terminal VCD_RS08705 PF00072 Response regulator receiver domain VCD_RS08710 PF02698 DUF218 domain VCD_RS08715 PF13847 Methyltransferase domain VCD_RS08720 PF03882 MukF winged-helix domain VCD_RS08720 PF17193 MukF C-terminal domain VCD_RS08720 PF17192 MukF middle domain VCD_RS08725 PF04288 MukE-like family VCD_RS08730 PF16330 MukB hinge domain VCD_RS08730 PF04310 MukB N-terminal VCD_RS08735 PF01037 Lrp/AsnC ligand binding domain VCD_RS08740 PF01810 LysE type translocator VCD_RS08745 PF08497 Radical SAM N-terminal VCD_RS08745 PF04055 Radical SAM superfamily VCD_RS08745 PF11842 Domain of unknown function (DUF3362) VCD_RS08750 PF08448 PAS fold VCD_RS08750 PF00563 EAL domain VCD_RS08750 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS08750 PF08447 PAS fold VCD_RS08755 PF00675 Insulinase (Peptidase family M16) VCD_RS08755 PF05193 Peptidase M16 inactive domain VCD_RS08770 PF03466 LysR substrate binding domain VCD_RS08770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS08775 PF08267 Cobalamin-independent synthase, N-terminal domain VCD_RS08775 PF01717 Cobalamin-independent synthase, Catalytic domain VCD_RS08785 PF03795 YCII-related domain VCD_RS08790 PF03061 Thioesterase superfamily VCD_RS08795 PF04279 Intracellular septation protein A VCD_RS08805 PF02698 DUF218 domain VCD_RS08810 PF01370 NAD dependent epimerase/dehydratase family VCD_RS08820 PF01226 Formate/nitrite transporter VCD_RS08830 PF06796 Periplasmic nitrate reductase protein NapE VCD_RS08835 PF03264 NapC/NirT cytochrome c family, N-terminal region VCD_RS08840 PF18364 Molybdopterin oxidoreductase N-terminal domain VCD_RS08840 PF00384 Molybdopterin oxidoreductase VCD_RS08840 PF01568 Molydopterin dinucleotide binding domain VCD_RS08860 PF01368 DHH family VCD_RS08860 PF02833 DHHA2 domain VCD_RS08875 PF00005 ABC transporter VCD_RS08880 PF00005 ABC transporter VCD_RS08880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_RS08885 PF12911 N-terminal TM domain of oligopeptide transport permease C VCD_RS08885 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS08890 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS08895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCD_RS08900 PF00158 Sigma-54 interaction domain VCD_RS08900 PF02954 Bacterial regulatory protein, Fis family VCD_RS08905 PF04012 PspA/IM30 family VCD_RS08920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_RS08920 PF00529 HlyD membrane-fusion protein of T1SS VCD_RS08925 PF13533 Biotin-lipoyl like VCD_RS08930 PF00873 AcrB/AcrD/AcrF family VCD_RS08935 PF03352 Methyladenine glycosylase VCD_RS08940 PF01053 Cys/Met metabolism PLP-dependent enzyme VCD_RS08945 PF13091 PLD-like domain VCD_RS08945 PF13396 Phospholipase_D-nuclease N-terminal VCD_RS08950 PF00209 Sodium:neurotransmitter symporter family VCD_RS08955 PF00849 RNA pseudouridylate synthase VCD_RS08960 PF01066 CDP-alcohol phosphatidyltransferase VCD_RS08965 PF00005 ABC transporter VCD_RS08970 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS08975 PF13416 Bacterial extracellular solute-binding protein VCD_RS08985 PF06945 Protein of unknown function (DUF1289) VCD_RS09000 PF00005 ABC transporter VCD_RS09005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_RS09010 PF03222 Tryptophan/tyrosine permease family VCD_RS09020 PF00571 CBS domain VCD_RS09020 PF01769 Divalent cation transporter VCD_RS09020 PF03448 MgtE intracellular N domain VCD_RS09025 PF09308 LuxQ, periplasmic VCD_RS09025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS09025 PF00072 Response regulator receiver domain VCD_RS09025 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS09030 PF00563 EAL domain VCD_RS09030 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS09030 PF03707 Bacterial signalling protein N terminal repeat VCD_RS09040 PF08453 Peptidase family M9 N-terminal VCD_RS09040 PF01752 Collagenase VCD_RS09040 PF04151 Bacterial pre-peptidase C-terminal domain VCD_RS09050 PF12793 Sugar transport-related sRNA regulator N-term VCD_RS09050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCD_RS09070 PF00672 HAMP domain VCD_RS09070 PF12729 Four helix bundle sensory module for signal transduction VCD_RS09070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS09085 PF01590 GAF domain VCD_RS09085 PF00563 EAL domain VCD_RS09085 PF00360 Phytochrome region VCD_RS09085 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS09090 PF01386 Ribosomal L25p family VCD_RS09095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS09100 PF00486 Transcriptional regulatory protein, C terminal VCD_RS09100 PF00072 Response regulator receiver domain VCD_RS09110 PF04851 Type III restriction enzyme, res subunit VCD_RS09110 PF00271 Helicase conserved C-terminal domain VCD_RS09115 PF00849 RNA pseudouridylate synthase VCD_RS09115 PF01479 S4 domain VCD_RS09120 PF07690 Major Facilitator Superfamily VCD_RS09130 PF13460 NAD(P)H-binding VCD_RS09130 PF11066 Protein of unknown function (DUF2867) VCD_RS09135 PF01554 MatE VCD_RS09140 PF00005 ABC transporter VCD_RS09145 PF12704 MacB-like periplasmic core domain VCD_RS09145 PF02687 FtsX-like permease family VCD_RS09155 PF06965 Na+/H+ antiporter 1 VCD_RS09160 PF00202 Aminotransferase class-III VCD_RS09165 PF03435 Saccharopine dehydrogenase NADP binding domain VCD_RS09165 PF16653 Saccharopine dehydrogenase C-terminal domain VCD_RS09175 PF05736 OprF membrane domain VCD_RS09175 PF00691 OmpA family VCD_RS09180 PF02321 Outer membrane efflux protein VCD_RS09200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS09200 PF03466 LysR substrate binding domain VCD_RS09210 PF01863 Protein of unknown function DUF45 VCD_RS09215 PF05971 RNA methyltransferase VCD_RS09230 PF04204 Homoserine O-succinyltransferase VCD_RS09250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_RS09265 PF00989 PAS fold VCD_RS09265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS09265 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VCD_RS09265 PF17203 Single cache domain 3 VCD_RS09270 PF12431 Transcriptional regulator VCD_RS09270 PF00072 Response regulator receiver domain VCD_RS09280 PF01584 CheW-like domain VCD_RS09280 PF00072 Response regulator receiver domain VCD_RS09295 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS09295 PF00072 Response regulator receiver domain VCD_RS09315 PF07690 Major Facilitator Superfamily VCD_RS09320 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VCD_RS09320 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VCD_RS09325 PF00288 GHMP kinases N terminal domain VCD_RS09325 PF08544 GHMP kinases C terminal VCD_RS09325 PF10509 Galactokinase galactose-binding signature VCD_RS09330 PF01263 Aldose 1-epimerase VCD_RS09335 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS09340 PF17154 Gammaproteobacterial periplasmic sensor domain VCD_RS09340 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS09340 PF00563 EAL domain VCD_RS09340 PF00672 HAMP domain VCD_RS09350 PF00205 Thiamine pyrophosphate enzyme, central domain VCD_RS09350 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VCD_RS09350 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VCD_RS09360 PF03466 LysR substrate binding domain VCD_RS09360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS09370 PF00199 Catalase VCD_RS09370 PF06628 Catalase-related immune-responsive VCD_RS09380 PF00080 Copper/zinc superoxide dismutase (SODC) VCD_RS09385 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) VCD_RS09390 PF00361 Proton-conducting membrane transporter VCD_RS09390 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VCD_RS09395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS09395 PF03466 LysR substrate binding domain VCD_RS09400 PF13193 AMP-binding enzyme C-terminal domain VCD_RS09400 PF00501 AMP-binding enzyme VCD_RS09415 PF04266 ASCH domain VCD_RS09430 PF00206 Lyase VCD_RS09430 PF10415 Fumarase C C-terminus VCD_RS09440 PF01654 Cytochrome bd terminal oxidase subunit I VCD_RS09445 PF02322 Cytochrome bd terminal oxidase subunit II VCD_RS09450 PF02687 FtsX-like permease family VCD_RS09450 PF00005 ABC transporter VCD_RS09450 PF12704 MacB-like periplasmic core domain VCD_RS09455 PF12704 MacB-like periplasmic core domain VCD_RS09455 PF02687 FtsX-like permease family VCD_RS09455 PF00005 ABC transporter VCD_RS09460 PF00005 ABC transporter VCD_RS09460 PF02687 FtsX-like permease family VCD_RS09460 PF12704 MacB-like periplasmic core domain VCD_RS09470 PF00529 HlyD membrane-fusion protein of T1SS VCD_RS09480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS09480 PF03466 LysR substrate binding domain VCD_RS09485 PF00141 Peroxidase VCD_RS09490 PF00232 Glycosyl hydrolase family 1 VCD_RS09495 PF00356 Bacterial regulatory proteins, lacI family VCD_RS09500 PF01042 Endoribonuclease L-PSP VCD_RS09505 PF04074 YhcH/YjgK/YiaL VCD_RS09510 PF03009 Glycerophosphoryl diester phosphodiesterase family VCD_RS09515 PF00455 DeoR C terminal sensor domain VCD_RS09515 PF08220 DeoR-like helix-turn-helix domain VCD_RS09520 PF00005 ABC transporter VCD_RS09520 PF17912 MalK OB fold domain VCD_RS09525 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS09530 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS09535 PF13416 Bacterial extracellular solute-binding protein VCD_RS09545 PF01618 MotA/TolQ/ExbB proton channel family VCD_RS09550 PF01618 MotA/TolQ/ExbB proton channel family VCD_RS09555 PF02472 Biopolymer transport protein ExbD/TolR VCD_RS09560 PF03544 Gram-negative bacterial TonB protein C-terminal VCD_RS09570 PF01068 ATP dependent DNA ligase domain VCD_RS09570 PF14743 DNA ligase OB-like domain VCD_RS09580 PF01554 MatE VCD_RS09590 PF03881 Fructosamine kinase VCD_RS09600 PF00877 NlpC/P60 family VCD_RS09605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS09605 PF00672 HAMP domain VCD_RS09605 PF12729 Four helix bundle sensory module for signal transduction VCD_RS09615 PF03942 DTW domain VCD_RS09620 PF00480 ROK family VCD_RS09645 PF00994 Probable molybdopterin binding domain VCD_RS09645 PF03453 MoeA N-terminal region (domain I and II) VCD_RS09645 PF03454 MoeA C-terminal region (domain IV) VCD_RS09650 PF12804 MobA-like NTP transferase domain VCD_RS09655 PF08402 TOBE domain VCD_RS09655 PF00005 ABC transporter VCD_RS09660 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS09665 PF12849 PBP superfamily domain VCD_RS09670 PF02954 Bacterial regulatory protein, Fis family VCD_RS09670 PF00072 Response regulator receiver domain VCD_RS09670 PF00158 Sigma-54 interaction domain VCD_RS09675 PF00989 PAS fold VCD_RS09675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS09675 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS09680 PF00005 ABC transporter VCD_RS09680 PF12848 ABC transporter VCD_RS09685 PF02634 FdhD/NarQ family VCD_RS09705 PF02613 Nitrate reductase delta subunit VCD_RS09715 PF01568 Molydopterin dinucleotide binding domain VCD_RS09715 PF00384 Molybdopterin oxidoreductase VCD_RS09715 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VCD_RS09720 PF13247 4Fe-4S dicluster domain VCD_RS09735 PF02146 Sir2 family VCD_RS09740 PF04461 Protein of unknown function (DUF520) VCD_RS09745 PF00793 DAHP synthetase I family VCD_RS09760 PF17783 CvfB-like winged helix domain VCD_RS09760 PF13509 S1 domain VCD_RS09765 PF01189 16S rRNA methyltransferase RsmB/F VCD_RS09765 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VCD_RS09765 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VCD_RS09770 PF02470 MlaD protein VCD_RS09775 PF04403 Paraquat-inducible protein A VCD_RS09780 PF00664 ABC transporter transmembrane region VCD_RS09780 PF00005 ABC transporter VCD_RS09785 PF13185 GAF domain VCD_RS09790 PF17516 ProQ C-terminal domain VCD_RS09790 PF04352 ProQ/FINO family VCD_RS09795 PF11818 C-terminal domain of tail specific protease (DUF3340) VCD_RS09795 PF17804 Tail specific protease N-terminal domain VCD_RS09795 PF03572 Peptidase family S41 VCD_RS09795 PF00595 PDZ domain VCD_RS09805 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VCD_RS09805 PF01433 Peptidase family M1 domain VCD_RS09805 PF11940 Domain of unknown function (DUF3458) Ig-like fold VCD_RS09815 PF05088 Bacterial NAD-glutamate dehydrogenase VCD_RS09820 PF01180 Dihydroorotate dehydrogenase VCD_RS09825 PF07126 Cell-division protein ZapC VCD_RS09830 PF02926 THUMP domain VCD_RS09830 PF10672 S-adenosylmethionine-dependent methyltransferase VCD_RS09830 PF01170 Putative RNA methylase family UPF0020 VCD_RS09840 PF12848 ABC transporter VCD_RS09840 PF00005 ABC transporter VCD_RS09840 PF16326 ABC transporter C-terminal domain VCD_RS09850 PF04957 Ribosome modulation factor VCD_RS09855 PF07977 FabA-like domain VCD_RS09860 PF05362 Lon protease (S16) C-terminal proteolytic domain VCD_RS09860 PF13654 AAA domain VCD_RS09865 PF06303 MatP N-terminal domain VCD_RS09865 PF17414 MatP C-terminal ribbon-helix-helix domain VCD_RS09880 PF07634 RtxA repeat VCD_RS09880 PF16671 Actin cross-linking domain VCD_RS09880 PF12146 Serine aminopeptidase, S33 VCD_RS09880 PF11647 Membrane Localization Domain VCD_RS09880 PF11713 Peptidase C80 family VCD_RS09885 PF02794 RTX toxin acyltransferase family VCD_RS09895 PF00664 ABC transporter transmembrane region VCD_RS09895 PF00005 ABC transporter VCD_RS09895 PF03412 Peptidase C39 family VCD_RS09905 PF00005 ABC transporter VCD_RS09905 PF00664 ABC transporter transmembrane region VCD_RS09905 PF03412 Peptidase C39 family VCD_RS09910 PF00072 Response regulator receiver domain VCD_RS09910 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS09910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS09910 PF09308 LuxQ, periplasmic VCD_RS09925 PF00115 Cytochrome C and Quinol oxidase polypeptide I VCD_RS09940 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VCD_RS09940 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VCD_RS09950 PF00403 Heavy-metal-associated domain VCD_RS09965 PF00027 Cyclic nucleotide-binding domain VCD_RS09965 PF13545 Crp-like helix-turn-helix domain VCD_RS09970 PF00582 Universal stress protein family VCD_RS09975 PF01171 PP-loop family VCD_RS09995 PF08402 TOBE domain VCD_RS09995 PF00005 ABC transporter VCD_RS10000 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS10005 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS10010 PF13416 Bacterial extracellular solute-binding protein VCD_RS10015 PF13416 Bacterial extracellular solute-binding protein VCD_RS10030 PF01235 Sodium:alanine symporter family VCD_RS10035 PF01810 LysE type translocator VCD_RS10050 PF01764 Lipase (class 3) VCD_RS10060 PF04717 Type VI secretion system, phage-baseplate injector VCD_RS10060 PF16671 Actin cross-linking domain VCD_RS10065 PF05638 Type VI secretion system effector, Hcp VCD_RS10070 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VCD_RS10075 PF00672 HAMP domain VCD_RS10075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS10075 PF02743 Cache domain VCD_RS10080 PF07690 Major Facilitator Superfamily VCD_RS10085 PF00529 HlyD membrane-fusion protein of T1SS VCD_RS10085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VCD_RS10090 PF02321 Outer membrane efflux protein VCD_RS10100 PF00270 DEAD/DEAH box helicase VCD_RS10100 PF00271 Helicase conserved C-terminal domain VCD_RS10105 PF13426 PAS domain VCD_RS10105 PF08447 PAS fold VCD_RS10105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS10110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS10110 PF00672 HAMP domain VCD_RS10115 PF17202 Single cache domain 3 VCD_RS10115 PF00672 HAMP domain VCD_RS10115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS10120 PF01584 CheW-like domain VCD_RS10125 PF01339 CheB methylesterase VCD_RS10125 PF00072 Response regulator receiver domain VCD_RS10135 PF03705 CheR methyltransferase, all-alpha domain VCD_RS10135 PF01739 CheR methyltransferase, SAM binding domain VCD_RS10140 PF01584 CheW-like domain VCD_RS10140 PF00072 Response regulator receiver domain VCD_RS10140 PF01627 Hpt domain VCD_RS10140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS10140 PF02895 Signal transducing histidine kinase, homodimeric domain VCD_RS10145 PF01627 Hpt domain VCD_RS10145 PF07194 P2 response regulator binding domain VCD_RS10145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS10145 PF01584 CheW-like domain VCD_RS10145 PF02895 Signal transducing histidine kinase, homodimeric domain VCD_RS10155 PF00072 Response regulator receiver domain VCD_RS10160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS10160 PF00672 HAMP domain VCD_RS10165 PF00893 Small Multidrug Resistance protein VCD_RS10170 PF00875 DNA photolyase VCD_RS10170 PF03441 FAD binding domain of DNA photolyase VCD_RS10175 PF07690 Major Facilitator Superfamily VCD_RS10180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS10180 PF03466 LysR substrate binding domain VCD_RS10190 PF10437 Bacterial lipoate protein ligase C-terminus VCD_RS10190 PF03099 Biotin/lipoate A/B protein ligase family VCD_RS10195 PF00012 Hsp70 protein VCD_RS10205 PF00271 Helicase conserved C-terminal domain VCD_RS10205 PF04408 Helicase associated domain (HA2) VCD_RS10205 PF11898 Domain of unknown function (DUF3418) VCD_RS10205 PF00270 DEAD/DEAH box helicase VCD_RS10205 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VCD_RS10235 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS10235 PF00563 EAL domain VCD_RS10235 PF03707 Bacterial signalling protein N terminal repeat VCD_RS10245 PF00012 Hsp70 protein VCD_RS10250 PF00012 Hsp70 protein VCD_RS10255 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS10255 PF17158 Membrane-associated sensor, integral membrane domain VCD_RS10265 PF03707 Bacterial signalling protein N terminal repeat VCD_RS10265 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS10265 PF00563 EAL domain VCD_RS10285 PF06508 Queuosine biosynthesis protein QueC VCD_RS10290 PF04055 Radical SAM superfamily VCD_RS10300 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VCD_RS10300 PF10414 Sirohaem synthase dimerisation region VCD_RS10300 PF14824 Sirohaem biosynthesis protein central VCD_RS10305 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_RS10310 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS10315 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS10320 PF00005 ABC transporter VCD_RS10325 PF01027 Inhibitor of apoptosis-promoting Bax1 VCD_RS10330 PF04358 DsrC like protein VCD_RS10335 PF00708 Acylphosphatase VCD_RS10340 PF17785 PUA-like domain VCD_RS10340 PF10672 S-adenosylmethionine-dependent methyltransferase VCD_RS10345 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS10355 PF08534 Redoxin VCD_RS10355 PF00462 Glutaredoxin VCD_RS10360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS10360 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS10360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VCD_RS10360 PF01627 Hpt domain VCD_RS10360 PF00672 HAMP domain VCD_RS10360 PF00072 Response regulator receiver domain VCD_RS10365 PF00072 Response regulator receiver domain VCD_RS10370 PF14497 Glutathione S-transferase, C-terminal domain VCD_RS10370 PF02798 Glutathione S-transferase, N-terminal domain VCD_RS10380 PF04209 homogentisate 1,2-dioxygenase VCD_RS10385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCD_RS10390 PF01546 Peptidase family M20/M25/M40 VCD_RS10390 PF07687 Peptidase dimerisation domain VCD_RS10405 PF16177 Acetyl-coenzyme A synthetase N-terminus VCD_RS10405 PF00501 AMP-binding enzyme VCD_RS10405 PF13193 AMP-binding enzyme C-terminal domain VCD_RS10410 PF04303 PrpF protein VCD_RS10415 PF00330 Aconitase family (aconitate hydratase) VCD_RS10415 PF00694 Aconitase C-terminal domain VCD_RS10420 PF00285 Citrate synthase, C-terminal domain VCD_RS10430 PF07729 FCD domain VCD_RS10430 PF00392 Bacterial regulatory proteins, gntR family VCD_RS10445 PF01970 Tripartite tricarboxylate transporter TctA family VCD_RS10460 PF02653 Branched-chain amino acid transport system / permease component VCD_RS10465 PF00005 ABC transporter VCD_RS10475 PF13407 Periplasmic binding protein domain VCD_RS10500 PF00486 Transcriptional regulatory protein, C terminal VCD_RS10500 PF00072 Response regulator receiver domain VCD_RS10505 PF00672 HAMP domain VCD_RS10505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS10505 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS10510 PF06629 MltA-interacting protein MipA VCD_RS10515 PF04393 Protein of unknown function (DUF535) VCD_RS10520 PF02954 Bacterial regulatory protein, Fis family VCD_RS10520 PF00072 Response regulator receiver domain VCD_RS10520 PF00158 Sigma-54 interaction domain VCD_RS10525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS10525 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS10525 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_RS10530 PF00939 Sodium:sulfate symporter transmembrane region VCD_RS10535 PF00672 HAMP domain VCD_RS10535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS10540 PF00842 Alanine racemase, C-terminal domain VCD_RS10540 PF01168 Alanine racemase, N-terminal domain VCD_RS10545 PF00892 EamA-like transporter family VCD_RS10555 PF13302 Acetyltransferase (GNAT) domain VCD_RS10560 PF18024 Helix-turn-helix domain VCD_RS10560 PF00158 Sigma-54 interaction domain VCD_RS10565 PF05128 Domain of unknown function (DUF697) VCD_RS10570 PF04317 YcjX-like family, DUF463 VCD_RS10585 PF00425 chorismate binding enzyme VCD_RS10585 PF04715 Anthranilate synthase component I, N terminal region VCD_RS10590 PF00293 NUDIX domain VCD_RS10595 PF03222 Tryptophan/tyrosine permease family VCD_RS10600 PF03315 Serine dehydratase beta chain VCD_RS10600 PF03313 Serine dehydratase alpha chain VCD_RS10605 PF01242 6-pyruvoyl tetrahydropterin synthase VCD_RS10650 PF18766 SWI2/SNF2 ATPase VCD_RS10650 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCD_RS10650 PF11867 Domain of unknown function (DUF3387) VCD_RS10660 PF02384 N-6 DNA Methylase VCD_RS10675 PF13657 HipA N-terminal domain VCD_RS10675 PF07804 HipA-like C-terminal domain VCD_RS10690 PF12729 Four helix bundle sensory module for signal transduction VCD_RS10690 PF00672 HAMP domain VCD_RS10690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS10695 PF00152 tRNA synthetases class II (D, K and N) VCD_RS10695 PF01336 OB-fold nucleic acid binding domain VCD_RS10700 PF08543 Phosphomethylpyrimidine kinase VCD_RS10705 PF01966 HD domain VCD_RS10705 PF00672 HAMP domain VCD_RS10715 PF00155 Aminotransferase class I and II VCD_RS10730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS10730 PF00672 HAMP domain VCD_RS10730 PF17200 Single Cache domain 2 VCD_RS10735 PF04349 Periplasmic glucan biosynthesis protein, MdoG VCD_RS10740 PF13506 Glycosyl transferase family 21 VCD_RS10745 PF00356 Bacterial regulatory proteins, lacI family VCD_RS10750 PF04794 YdjC-like protein VCD_RS10755 PF11975 Family 4 glycosyl hydrolase C-terminal domain VCD_RS10755 PF02056 Family 4 glycosyl hydrolase VCD_RS10760 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VCD_RS10765 PF02378 Phosphotransferase system, EIIC VCD_RS10770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VCD_RS10775 PF01522 Polysaccharide deacetylase VCD_RS10780 PF02028 BCCT, betaine/carnitine/choline family transporter VCD_RS10785 PF01047 MarR family VCD_RS10790 PF00072 Response regulator receiver domain VCD_RS10790 PF00196 Bacterial regulatory proteins, luxR family VCD_RS10795 PF07730 Histidine kinase VCD_RS10795 PF17200 Single Cache domain 2 VCD_RS10800 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VCD_RS10810 PF03480 Bacterial extracellular solute-binding protein, family 7 VCD_RS10825 PF00753 Metallo-beta-lactamase superfamily VCD_RS10830 PF05951 Bacterial protein of unknown function (DUF882) VCD_RS10835 PF03734 L,D-transpeptidase catalytic domain VCD_RS10835 PF01471 Putative peptidoglycan binding domain VCD_RS10860 PF00925 GTP cyclohydrolase II VCD_RS10870 PF07690 Major Facilitator Superfamily VCD_RS10880 PF00581 Rhodanese-like domain VCD_RS10880 PF17773 UPF0176 acylphosphatase like domain VCD_RS10885 PF00521 DNA gyrase/topoisomerase IV, subunit A VCD_RS10885 PF03989 DNA gyrase C-terminal domain, beta-propeller VCD_RS10895 PF02867 Ribonucleotide reductase, barrel domain VCD_RS10895 PF03477 ATP cone domain VCD_RS10895 PF00317 Ribonucleotide reductase, all-alpha domain VCD_RS10900 PF00268 Ribonucleotide reductase, small chain VCD_RS10905 PF00970 Oxidoreductase FAD-binding domain VCD_RS10905 PF00175 Oxidoreductase NAD-binding domain VCD_RS10905 PF00111 2Fe-2S iron-sulfur cluster binding domain VCD_RS10915 PF00994 Probable molybdopterin binding domain VCD_RS10930 PF00672 HAMP domain VCD_RS10930 PF17200 Single Cache domain 2 VCD_RS10930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS10945 PF00005 ABC transporter VCD_RS10950 PF01032 FecCD transport family VCD_RS10955 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VCD_RS10965 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VCD_RS10970 PF02654 Cobalamin-5-phosphate synthase VCD_RS10975 PF02277 Phosphoribosyltransferase VCD_RS10980 PF01641 SelR domain VCD_RS10985 PF00375 Sodium:dicarboxylate symporter family VCD_RS10990 PF08411 Exonuclease C-terminal VCD_RS10990 PF00929 Exonuclease VCD_RS10995 PF03788 LrgA family VCD_RS11000 PF04172 LrgB-like family VCD_RS11005 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VCD_RS11005 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VCD_RS11015 PF02222 ATP-grasp domain VCD_RS11025 PF05724 Thiopurine S-methyltransferase (TPMT) VCD_RS11040 PF00216 Bacterial DNA-binding protein VCD_RS11045 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VCD_RS11045 PF01588 Putative tRNA binding domain VCD_RS11045 PF03147 Ferredoxin-fold anticodon binding domain VCD_RS11045 PF03484 tRNA synthetase B5 domain VCD_RS11045 PF03483 B3/4 domain VCD_RS11050 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VCD_RS11050 PF01409 tRNA synthetases class II core domain (F) VCD_RS11060 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS11060 PF00072 Response regulator receiver domain VCD_RS11085 PF01066 CDP-alcohol phosphatidyltransferase VCD_RS11090 PF02151 UvrB/uvrC motif VCD_RS11090 PF01541 GIY-YIG catalytic domain VCD_RS11090 PF08459 UvrC Helix-hairpin-helix N-terminal VCD_RS11095 PF00072 Response regulator receiver domain VCD_RS11095 PF00196 Bacterial regulatory proteins, luxR family VCD_RS11100 PF00136 DNA polymerase family B VCD_RS11100 PF03104 DNA polymerase family B, exonuclease domain VCD_RS11105 PF00563 EAL domain VCD_RS11105 PF13426 PAS domain VCD_RS11105 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS11115 PF01132 Elongation factor P (EF-P) OB domain VCD_RS11115 PF09285 Elongation factor P, C-terminal VCD_RS11115 PF08207 Elongation factor P (EF-P) KOW-like domain VCD_RS11120 PF04269 Protein of unknown function, DUF440 VCD_RS11130 PF00392 Bacterial regulatory proteins, gntR family VCD_RS11130 PF07702 UTRA domain VCD_RS11135 PF01979 Amidohydrolase family VCD_RS11140 PF00491 Arginase family VCD_RS11145 PF01175 Urocanase Rossmann-like domain VCD_RS11145 PF17392 Urocanase C-terminal domain VCD_RS11145 PF17391 Urocanase N-terminal domain VCD_RS11150 PF00221 Aromatic amino acid lyase VCD_RS11160 PF00089 Trypsin VCD_RS11165 PF04191 Phospholipid methyltransferase VCD_RS11170 PF02913 FAD linked oxidases, C-terminal domain VCD_RS11170 PF01565 FAD binding domain VCD_RS11170 PF13183 4Fe-4S dicluster domain VCD_RS11185 PF13488 Glycine zipper VCD_RS11185 PF00691 OmpA family VCD_RS11205 PF01259 SAICAR synthetase VCD_RS11215 PF00390 Malic enzyme, N-terminal domain VCD_RS11215 PF03949 Malic enzyme, NAD binding domain VCD_RS11225 PF02698 DUF218 domain VCD_RS11230 PF08448 PAS fold VCD_RS11230 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS11235 PF00266 Aminotransferase class-V VCD_RS11245 PF07992 Pyridine nucleotide-disulphide oxidoreductase VCD_RS11250 PF00664 ABC transporter transmembrane region VCD_RS11250 PF00005 ABC transporter VCD_RS11255 PF00005 ABC transporter VCD_RS11255 PF00664 ABC transporter transmembrane region VCD_RS11260 PF00849 RNA pseudouridylate synthase VCD_RS11260 PF01479 S4 domain VCD_RS11265 PF01300 Telomere recombination VCD_RS11270 PF02811 PHP domain VCD_RS11275 PF08056 Tryptophan operon leader peptide VCD_RS11280 PF00425 chorismate binding enzyme VCD_RS11280 PF04715 Anthranilate synthase component I, N terminal region VCD_RS11285 PF00117 Glutamine amidotransferase class-I VCD_RS11290 PF00591 Glycosyl transferase family, a/b domain VCD_RS11290 PF02885 Glycosyl transferase family, helical bundle domain VCD_RS11295 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VCD_RS11295 PF00218 Indole-3-glycerol phosphate synthase VCD_RS11300 PF00291 Pyridoxal-phosphate dependent enzyme VCD_RS11305 PF00290 Tryptophan synthase alpha chain VCD_RS11310 PF00375 Sodium:dicarboxylate symporter family VCD_RS11315 PF00265 Thymidine kinase VCD_RS11320 PF02938 GAD domain VCD_RS11320 PF00152 tRNA synthetases class II (D, K and N) VCD_RS11320 PF01336 OB-fold nucleic acid binding domain VCD_RS11325 PF01904 Protein of unknown function DUF72 VCD_RS11330 PF13649 Methyltransferase domain VCD_RS11335 PF08003 Protein of unknown function (DUF1698) VCD_RS11340 PF18030 RimK PreATP-grasp domain VCD_RS11340 PF08443 RimK-like ATP-grasp domain VCD_RS11355 PF00266 Aminotransferase class-V VCD_RS11365 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS11365 PF00989 PAS fold VCD_RS11365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS11380 PF04993 TfoX N-terminal domain VCD_RS11380 PF04994 TfoX C-terminal domain VCD_RS11390 PF03956 Lysine exporter LysO VCD_RS11400 PF00282 Pyridoxal-dependent decarboxylase conserved domain VCD_RS11405 PF01380 SIS domain VCD_RS11405 PF01418 Helix-turn-helix domain, rpiR family VCD_RS11410 PF00171 Aldehyde dehydrogenase family VCD_RS11410 PF00465 Iron-containing alcohol dehydrogenase VCD_RS11415 PF00462 Glutaredoxin VCD_RS11420 PF06826 Predicted Permease Membrane Region VCD_RS11420 PF02080 TrkA-C domain VCD_RS11425 PF10431 C-terminal, D2-small domain, of ClpB protein VCD_RS11425 PF02861 Clp amino terminal domain, pathogenicity island component VCD_RS11425 PF17871 AAA lid domain VCD_RS11425 PF07724 AAA domain (Cdc48 subfamily) VCD_RS11425 PF00004 ATPase family associated with various cellular activities (AAA) VCD_RS11430 PF02617 ATP-dependent Clp protease adaptor protein ClpS VCD_RS11435 PF00313 'Cold-shock' DNA-binding domain VCD_RS11440 PF03971 Monomeric isocitrate dehydrogenase VCD_RS11445 PF00849 RNA pseudouridylate synthase VCD_RS11450 PF01502 Phosphoribosyl-AMP cyclohydrolase VCD_RS11450 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VCD_RS11455 PF00977 Histidine biosynthesis protein VCD_RS11460 PF00977 Histidine biosynthesis protein VCD_RS11465 PF00117 Glutamine amidotransferase class-I VCD_RS11470 PF00475 Imidazoleglycerol-phosphate dehydratase VCD_RS11470 PF08645 Polynucleotide kinase 3 phosphatase VCD_RS11475 PF00155 Aminotransferase class I and II VCD_RS11480 PF00815 Histidinol dehydrogenase VCD_RS11485 PF08029 HisG, C-terminal domain VCD_RS11485 PF01634 ATP phosphoribosyltransferase VCD_RS11490 PF03553 Na+/H+ antiporter family VCD_RS11495 PF00816 H-NS histone family VCD_RS11500 PF00294 pfkB family carbohydrate kinase VCD_RS11510 PF04356 Protein of unknown function (DUF489) VCD_RS11515 PF00206 Lyase VCD_RS11515 PF08328 Adenylosuccinate lyase C-terminal VCD_RS11525 PF16036 Chalcone isomerase-like VCD_RS11550 PF00106 short chain dehydrogenase VCD_RS11560 PF01435 Peptidase family M48 VCD_RS11575 PF08241 Methyltransferase domain VCD_RS11580 PF00155 Aminotransferase class I and II VCD_RS11585 PF04055 Radical SAM superfamily VCD_RS11585 PF06968 Biotin and Thiamin Synthesis associated domain VCD_RS11590 PF00202 Aminotransferase class-III VCD_RS11595 PF02403 Seryl-tRNA synthetase N-terminal domain VCD_RS11595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCD_RS11600 PF00004 ATPase family associated with various cellular activities (AAA) VCD_RS11600 PF16193 AAA C-terminal domain VCD_RS11600 PF12002 MgsA AAA+ ATPase C terminal VCD_RS11605 PF03548 Outer membrane lipoprotein carrier protein LolA VCD_RS11610 PF01043 SecA preprotein cross-linking domain VCD_RS11610 PF07516 SecA Wing and Scaffold domain VCD_RS11610 PF02810 SEC-C motif VCD_RS11610 PF07517 SecA DEAD-like domain VCD_RS11615 PF01207 Dihydrouridine synthase (Dus) VCD_RS11620 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS11625 PF00005 ABC transporter VCD_RS11630 PF02653 Branched-chain amino acid transport system / permease component VCD_RS11640 PF09905 DNA-binding protein VF530 VCD_RS11645 PF04217 Protein of unknown function, DUF412 VCD_RS11650 PF00871 Acetokinase family VCD_RS11655 PF01515 Phosphate acetyl/butaryl transferase VCD_RS11655 PF07085 DRTGG domain VCD_RS11660 PF13409 Glutathione S-transferase, N-terminal domain VCD_RS11665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_RS11665 PF00005 ABC transporter VCD_RS11670 PF00005 ABC transporter VCD_RS11670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_RS11675 PF12911 N-terminal TM domain of oligopeptide transport permease C VCD_RS11675 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS11680 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS11685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCD_RS11695 PF08448 PAS fold VCD_RS11695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS11695 PF00072 Response regulator receiver domain VCD_RS11695 PF13188 PAS domain VCD_RS11695 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS11700 PF02954 Bacterial regulatory protein, Fis family VCD_RS11700 PF00072 Response regulator receiver domain VCD_RS11700 PF00158 Sigma-54 interaction domain VCD_RS11705 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS11705 PF00563 EAL domain VCD_RS11705 PF13188 PAS domain VCD_RS11705 PF03707 Bacterial signalling protein N terminal repeat VCD_RS11710 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS11710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS11715 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS11715 PF13188 PAS domain VCD_RS11715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS11715 PF00989 PAS fold VCD_RS11715 PF13426 PAS domain VCD_RS11725 PF00072 Response regulator receiver domain VCD_RS11740 PF03481 Putative GTP-binding controlling metal-binding VCD_RS11740 PF01300 Telomere recombination VCD_RS11760 PF01161 Phosphatidylethanolamine-binding protein VCD_RS11770 PF06483 Chitinase C VCD_RS11770 PF00704 Glycosyl hydrolases family 18 VCD_RS11785 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCD_RS11785 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VCD_RS11790 PF01022 Bacterial regulatory protein, arsR family VCD_RS11795 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS11795 PF08448 PAS fold VCD_RS11805 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VCD_RS11820 PF01037 Lrp/AsnC ligand binding domain VCD_RS11820 PF13404 AsnC-type helix-turn-helix domain VCD_RS11825 PF00291 Pyridoxal-phosphate dependent enzyme VCD_RS11830 PF08496 Peptidase family S49 N-terminal VCD_RS11830 PF01343 Peptidase family S49 VCD_RS11835 PF00106 short chain dehydrogenase VCD_RS11840 PF03692 Putative zinc- or iron-chelating domain VCD_RS11845 PF03692 Putative zinc- or iron-chelating domain VCD_RS11850 PF13662 Toprim domain VCD_RS11850 PF02132 RecR protein VCD_RS11855 PF02575 YbaB/EbfC DNA-binding family VCD_RS11860 PF12169 DNA polymerase III subunits gamma and tau domain III VCD_RS11860 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VCD_RS11860 PF12170 DNA polymerase III tau subunit V interacting with alpha VCD_RS11865 PF00156 Phosphoribosyl transferase domain VCD_RS11870 PF04304 Protein of unknown function (DUF454) VCD_RS11880 PF00072 Response regulator receiver domain VCD_RS11885 PF03466 LysR substrate binding domain VCD_RS11885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS11890 PF00881 Nitroreductase family VCD_RS11895 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VCD_RS11895 PF00378 Enoyl-CoA hydratase/isomerase VCD_RS11895 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VCD_RS11900 PF02803 Thiolase, C-terminal domain VCD_RS11900 PF00108 Thiolase, N-terminal domain VCD_RS11910 PF04542 Sigma-70 region 2 VCD_RS11910 PF08281 Sigma-70, region 4 VCD_RS11920 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VCD_RS11925 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VCD_RS11930 PF01451 Low molecular weight phosphotyrosine protein phosphatase VCD_RS11935 PF12557 Cob(I)alamin adenosyltransferase N terminal VCD_RS11935 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VCD_RS11940 PF05170 AsmA family VCD_RS11945 PF00485 Phosphoribulokinase / Uridine kinase family VCD_RS11955 PF10609 NUBPL iron-transfer P-loop NTPase VCD_RS11960 PF09334 tRNA synthetases class I (M) VCD_RS11960 PF01588 Putative tRNA binding domain VCD_RS11970 PF01048 Phosphorylase superfamily VCD_RS11975 PF00403 Heavy-metal-associated domain VCD_RS11985 PF01743 Poly A polymerase head domain VCD_RS11985 PF00571 CBS domain VCD_RS11990 PF07694 5TMR of 5TMR-LYT VCD_RS11990 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS11995 PF02391 MoaE protein VCD_RS12000 PF02597 ThiS family VCD_RS12005 PF01967 MoaC family VCD_RS12010 PF00994 Probable molybdopterin binding domain VCD_RS12015 PF06463 Molybdenum Cofactor Synthesis C VCD_RS12015 PF04055 Radical SAM superfamily VCD_RS12020 PF01933 Uncharacterised protein family UPF0052 VCD_RS12025 PF01627 Hpt domain VCD_RS12030 PF02954 Bacterial regulatory protein, Fis family VCD_RS12030 PF00072 Response regulator receiver domain VCD_RS12030 PF00158 Sigma-54 interaction domain VCD_RS12040 PF17757 UvrB interaction domain VCD_RS12040 PF12344 Ultra-violet resistance protein B VCD_RS12040 PF02151 UvrB/uvrC motif VCD_RS12040 PF04851 Type III restriction enzyme, res subunit VCD_RS12040 PF00271 Helicase conserved C-terminal domain VCD_RS12050 PF02508 Rnf-Nqr subunit, membrane protein VCD_RS12055 PF04060 Putative Fe-S cluster VCD_RS12060 PF12838 4Fe-4S dicluster domain VCD_RS12060 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VCD_RS12060 PF10531 SLBB domain VCD_RS12060 PF13375 RnfC Barrel sandwich hybrid domain VCD_RS12065 PF03116 NQR2, RnfD, RnfE family VCD_RS12070 PF04205 FMN-binding domain VCD_RS12075 PF02508 Rnf-Nqr subunit, membrane protein VCD_RS12080 PF00633 Helix-hairpin-helix motif VCD_RS12080 PF10576 Iron-sulfur binding domain of endonuclease III VCD_RS12080 PF00730 HhH-GPD superfamily base excision DNA repair protein VCD_RS12085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VCD_RS12090 PF10952 Protein of unknown function (DUF2753) VCD_RS12095 PF18393 MotY N-terminal domain VCD_RS12095 PF00691 OmpA family VCD_RS12105 PF00929 Exonuclease VCD_RS12110 PF03553 Na+/H+ antiporter family VCD_RS12110 PF13726 Na+-H+ antiporter family VCD_RS12115 PF00156 Phosphoribosyl transferase domain VCD_RS12120 PF02674 Colicin V production protein VCD_RS12125 PF05036 Sporulation related domain VCD_RS12130 PF08245 Mur ligase middle domain VCD_RS12130 PF02875 Mur ligase family, glutamate ligase domain VCD_RS12135 PF01039 Carboxyl transferase domain VCD_RS12135 PF17848 Acetyl-coA carboxylase zinc finger domain VCD_RS12140 PF01416 tRNA pseudouridine synthase VCD_RS12150 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VCD_RS12150 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCD_RS12155 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VCD_RS12155 PF00367 phosphotransferase system, EIIB VCD_RS12155 PF02378 Phosphotransferase system, EIIC VCD_RS12160 PF01979 Amidohydrolase family VCD_RS12165 PF00480 ROK family VCD_RS12165 PF01047 MarR family VCD_RS12170 PF02254 TrkA-N domain VCD_RS12170 PF00999 Sodium/hydrogen exchanger family VCD_RS12175 PF00733 Asparagine synthase VCD_RS12175 PF13537 Glutamine amidotransferase domain VCD_RS12180 PF02357 Transcription termination factor nusG VCD_RS12185 PF00854 POT family VCD_RS12190 PF00762 Ferrochelatase VCD_RS12195 PF05191 Adenylate kinase, active site lid VCD_RS12200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS12200 PF00183 Hsp90 protein VCD_RS12205 PF00486 Transcriptional regulatory protein, C terminal VCD_RS12210 PF17323 Trans-membrane regulatory protein ToxS VCD_RS12220 PF12850 Calcineurin-like phosphoesterase superfamily domain VCD_RS12225 PF08338 Domain of unknown function (DUF1731) VCD_RS12225 PF01370 NAD dependent epimerase/dehydratase family VCD_RS12230 PF00106 short chain dehydrogenase VCD_RS12235 PF00085 Thioredoxin VCD_RS12240 PF16200 C-terminal region of band_7 VCD_RS12240 PF01145 SPFH domain / Band 7 family VCD_RS12245 PF01957 NfeD-like C-terminal, partner-binding VCD_RS12250 PF13411 MerR HTH family regulatory protein VCD_RS12260 PF13609 Gram-negative porin VCD_RS12265 PF00533 BRCA1 C Terminus (BRCT) domain VCD_RS12265 PF12826 Helix-hairpin-helix motif VCD_RS12265 PF01653 NAD-dependent DNA ligase adenylation domain VCD_RS12265 PF03120 NAD-dependent DNA ligase OB-fold domain VCD_RS12265 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VCD_RS12270 PF04354 ZipA, C-terminal FtsZ-binding domain VCD_RS12280 PF00291 Pyridoxal-phosphate dependent enzyme VCD_RS12290 PF00381 PTS HPr component phosphorylation site VCD_RS12295 PF00391 PEP-utilising enzyme, mobile domain VCD_RS12295 PF02896 PEP-utilising enzyme, TIM barrel domain VCD_RS12295 PF05524 PEP-utilising enzyme, N-terminal VCD_RS12300 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VCD_RS12305 PF01494 FAD binding domain VCD_RS12310 PF00919 Uncharacterized protein family UPF0004 VCD_RS12310 PF01938 TRAM domain VCD_RS12310 PF04055 Radical SAM superfamily VCD_RS12315 PF02562 PhoH-like protein VCD_RS12320 PF02130 Uncharacterized protein family UPF0054 VCD_RS12325 PF03471 Transporter associated domain VCD_RS12325 PF00571 CBS domain VCD_RS12330 PF00795 Carbon-nitrogen hydrolase VCD_RS12335 PF07295 Zinc-ribbon containing domain VCD_RS12340 PF13603 Leucyl-tRNA synthetase, Domain 2 VCD_RS12340 PF00133 tRNA synthetases class I (I, L, M and V) VCD_RS12340 PF08264 Anticodon-binding domain of tRNA VCD_RS12345 PF04390 Lipopolysaccharide-assembly VCD_RS12350 PF06144 DNA polymerase III, delta subunit VCD_RS12350 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VCD_RS12360 PF02590 Predicted SPOUT methyltransferase VCD_RS12365 PF03717 Penicillin-binding Protein dimerisation domain VCD_RS12365 PF00905 Penicillin binding protein transpeptidase domain VCD_RS12370 PF01098 Cell cycle protein VCD_RS12375 PF03330 Lytic transglycolase VCD_RS12375 PF05036 Sporulation related domain VCD_RS12380 PF00768 D-alanyl-D-alanine carboxypeptidase VCD_RS12380 PF07943 Penicillin-binding protein 5, C-terminal domain VCD_RS12390 PF04359 Protein of unknown function (DUF493) VCD_RS12395 PF03099 Biotin/lipoate A/B protein ligase family VCD_RS12400 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VCD_RS12400 PF04055 Radical SAM superfamily VCD_RS12410 PF00464 Serine hydroxymethyltransferase VCD_RS12430 PF13614 AAA domain VCD_RS12430 PF13807 G-rich domain on putative tyrosine kinase VCD_RS12430 PF02706 Chain length determinant protein VCD_RS12435 PF02563 Polysaccharide biosynthesis/export protein VCD_RS12435 PF10531 SLBB domain VCD_RS12435 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VCD_RS12445 PF02397 Bacterial sugar transferase VCD_RS12460 PF17945 Beta/Gamma crystallin VCD_RS12460 PF12561 ToxR activated gene A lipoprotein domain VCD_RS12475 PF03808 Glycosyl transferase WecB/TagA/CpsF family VCD_RS12485 PF00862 Sucrose synthase VCD_RS12485 PF00534 Glycosyl transferases group 1 VCD_RS12495 PF00132 Bacterial transferase hexapeptide (six repeats) VCD_RS12515 PF12464 Maltose acetyltransferase VCD_RS12515 PF14602 Hexapeptide repeat of succinyl-transferase VCD_RS12520 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VCD_RS12520 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VCD_RS12520 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VCD_RS12525 PF02350 UDP-N-acetylglucosamine 2-epimerase VCD_RS12530 PF01451 Low molecular weight phosphotyrosine protein phosphatase VCD_RS12535 PF00873 AcrB/AcrD/AcrF family VCD_RS12540 PF13533 Biotin-lipoyl like VCD_RS12565 PF00128 Alpha amylase, catalytic domain VCD_RS12565 PF16657 Maltogenic Amylase, C-terminal domain VCD_RS12570 PF02378 Phosphotransferase system, EIIC VCD_RS12570 PF00367 phosphotransferase system, EIIB VCD_RS12575 PF00356 Bacterial regulatory proteins, lacI family VCD_RS12585 PF09383 NIL domain VCD_RS12585 PF00005 ABC transporter VCD_RS12590 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS12595 PF03180 NLPA lipoprotein VCD_RS12600 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VCD_RS12605 PF07348 Syd protein (SUKH-2) VCD_RS12610 PF14489 QueF-like protein VCD_RS12610 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VCD_RS12620 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS12625 PF11892 Domain of unknown function (DUF3412) VCD_RS12625 PF03641 Possible lysine decarboxylase VCD_RS12625 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VCD_RS12630 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VCD_RS12630 PF01367 5'-3' exonuclease, C-terminal SAM fold VCD_RS12635 PF04241 Protein of unknown function (DUF423) VCD_RS12640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS12640 PF03466 LysR substrate binding domain VCD_RS12650 PF02568 Thiamine biosynthesis protein (ThiI) VCD_RS12650 PF02926 THUMP domain VCD_RS12660 PF01618 MotA/TolQ/ExbB proton channel family VCD_RS12665 PF02609 Exonuclease VII small subunit VCD_RS12670 PF00348 Polyprenyl synthetase VCD_RS12675 PF02780 Transketolase, C-terminal domain VCD_RS12675 PF02779 Transketolase, pyrimidine binding domain VCD_RS12675 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VCD_RS12680 PF00849 RNA pseudouridylate synthase VCD_RS12685 PF04287 tRNA pseudouridine synthase C VCD_RS12700 PF13302 Acetyltransferase (GNAT) domain VCD_RS12710 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VCD_RS12715 PF03806 AbgT putative transporter family VCD_RS12720 PF00444 Ribosomal protein L36 VCD_RS12725 PF01197 Ribosomal protein L31 VCD_RS12730 PF01980 tRNA-methyltransferase O VCD_RS12730 PF18389 TrmO C-terminal domain VCD_RS12735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VCD_RS12735 PF04073 Aminoacyl-tRNA editing domain VCD_RS12735 PF03129 Anticodon binding domain VCD_RS12750 PF06786 Uncharacterised protein family (UPF0253) VCD_RS12760 PF01797 Transposase IS200 like VCD_RS12765 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VCD_RS12765 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VCD_RS12765 PF02769 AIR synthase related protein, C-terminal domain VCD_RS12775 PF00497 Bacterial extracellular solute-binding proteins, family 3 VCD_RS12775 PF01464 Transglycosylase SLT domain VCD_RS12785 PF14437 MafB19-like deaminase VCD_RS12790 PF03806 AbgT putative transporter family VCD_RS12820 PF00114 Pilin (bacterial filament) VCD_RS12820 PF07963 Prokaryotic N-terminal methylation motif VCD_RS12825 PF01556 DnaJ C terminal domain VCD_RS12825 PF00684 DnaJ central domain VCD_RS12825 PF00226 DnaJ domain VCD_RS12830 PF00012 Hsp70 protein VCD_RS12835 PF01025 GrpE VCD_RS12840 PF01513 ATP-NAD kinase VCD_RS12845 PF02463 RecF/RecN/SMC N terminal domain VCD_RS12850 PF04355 SmpA / OmlA family VCD_RS12855 PF03658 RnfH family Ubiquitin VCD_RS12860 PF03364 Polyketide cyclase / dehydrase and lipid transport VCD_RS12865 PF01668 SmpB protein VCD_RS12880 PF13402 Peptidase M60, enhancin and enhancin-like VCD_RS12880 PF17291 N-terminal domain of M60-like peptidases VCD_RS12880 PF13322 Domain of unknown function (DUF4092) VCD_RS12890 PF04225 Opacity-associated protein A LysM-like domain VCD_RS12890 PF01551 Peptidase family M23 VCD_RS12905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS12905 PF00672 HAMP domain VCD_RS12905 PF02743 Cache domain VCD_RS12910 PF01478 Type IV leader peptidase family VCD_RS12910 PF06750 Bacterial Peptidase A24 N-terminal domain VCD_RS12915 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family VCD_RS12920 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F VCD_RS12925 PF00482 Type II secretion system (T2SS), protein F VCD_RS12930 PF00437 Type II/IV secretion system protein VCD_RS12935 PF17456 Toxin-coregulated pilus protein S VCD_RS12955 PF10671 Toxin co-regulated pilus biosynthesis protein Q VCD_RS12965 PF07963 Prokaryotic N-terminal methylation motif VCD_RS12965 PF05946 Toxin-coregulated pilus subunit TcpA VCD_RS12975 PF00486 Transcriptional regulatory protein, C terminal VCD_RS12980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS12985 PF08534 Redoxin VCD_RS13000 PF00041 Fibronectin type III domain VCD_RS13000 PF12561 ToxR activated gene A lipoprotein domain VCD_RS13005 PF00171 Aldehyde dehydrogenase family VCD_RS13010 PF13737 Transposase DDE domain VCD_RS13015 PF13737 Transposase DDE domain VCD_RS13080 PF11953 Domain of unknown function (DUF3470) VCD_RS13080 PF00037 4Fe-4S binding domain VCD_RS13085 PF08032 RNA 2'-O ribose methyltransferase substrate binding VCD_RS13085 PF00588 SpoU rRNA Methylase family VCD_RS13095 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase VCD_RS13100 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase VCD_RS13105 PF04223 Citrate lyase, alpha subunit (CitF) VCD_RS13110 PF03328 HpcH/HpaI aldolase/citrate lyase family VCD_RS13115 PF06857 Malonate decarboxylase delta subunit (MdcD) VCD_RS13120 PF08218 Citrate lyase ligase C-terminal domain VCD_RS13125 PF03390 2-hydroxycarboxylate transporter family VCD_RS13130 PF04277 Oxaloacetate decarboxylase, gamma chain VCD_RS13135 PF00364 Biotin-requiring enzyme VCD_RS13135 PF02436 Conserved carboxylase domain VCD_RS13135 PF00682 HMGL-like VCD_RS13140 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VCD_RS13145 PF17203 Single cache domain 3 VCD_RS13145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS13165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS13165 PF03466 LysR substrate binding domain VCD_RS13170 PF01266 FAD dependent oxidoreductase VCD_RS13175 PF01235 Sodium:alanine symporter family VCD_RS13180 PF14864 Alkyl sulfatase C-terminal VCD_RS13180 PF14863 Alkyl sulfatase dimerisation VCD_RS13180 PF00753 Metallo-beta-lactamase superfamily VCD_RS13185 PF03466 LysR substrate binding domain VCD_RS13185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS13190 PF01648 4'-phosphopantetheinyl transferase superfamily VCD_RS13190 PF17837 4'-phosphopantetheinyl transferase N-terminal domain VCD_RS13195 PF00005 ABC transporter VCD_RS13200 PF01032 FecCD transport family VCD_RS13205 PF01032 FecCD transport family VCD_RS13210 PF01497 Periplasmic binding protein VCD_RS13225 PF00425 chorismate binding enzyme VCD_RS13230 PF13193 AMP-binding enzyme C-terminal domain VCD_RS13230 PF00501 AMP-binding enzyme VCD_RS13235 PF00550 Phosphopantetheine attachment site VCD_RS13235 PF00857 Isochorismatase family VCD_RS13240 PF01184 GPR1/FUN34/yaaH family VCD_RS13245 PF00704 Glycosyl hydrolases family 18 VCD_RS13245 PF06483 Chitinase C VCD_RS13250 PF00958 GMP synthase C terminal domain VCD_RS13250 PF02540 NAD synthase VCD_RS13250 PF00117 Glutamine amidotransferase class-I VCD_RS13255 PF00571 CBS domain VCD_RS13255 PF00478 IMP dehydrogenase / GMP reductase domain VCD_RS13260 PF13742 OB-fold nucleic acid binding domain VCD_RS13260 PF02601 Exonuclease VII, large subunit VCD_RS13275 PF01926 50S ribosome-binding GTPase VCD_RS13275 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VCD_RS13280 PF13360 PQQ-like domain VCD_RS13285 PF09976 Tetratricopeptide repeat-like domain VCD_RS13290 PF13393 Histidyl-tRNA synthetase VCD_RS13290 PF03129 Anticodon binding domain VCD_RS13295 PF04551 GcpE protein VCD_RS13300 PF13464 Domain of unknown function (DUF4115) VCD_RS13305 PF04055 Radical SAM superfamily VCD_RS13310 PF00334 Nucleoside diphosphate kinase VCD_RS13315 PF12404 Peptidase VCD_RS13315 PF00883 Cytosol aminopeptidase family, catalytic domain VCD_RS13320 PF04384 Iron-sulphur cluster assembly VCD_RS13325 PF00111 2Fe-2S iron-sulfur cluster binding domain VCD_RS13330 PF00012 Hsp70 protein VCD_RS13335 PF00226 DnaJ domain VCD_RS13335 PF07743 HSCB C-terminal oligomerisation domain VCD_RS13340 PF01521 Iron-sulphur cluster biosynthesis VCD_RS13345 PF01592 NifU-like N terminal domain VCD_RS13350 PF00266 Aminotransferase class-V VCD_RS13355 PF02082 Transcriptional regulator VCD_RS13360 PF00588 SpoU rRNA Methylase family VCD_RS13365 PF00459 Inositol monophosphatase family VCD_RS13370 PF07549 SecD/SecF GG Motif VCD_RS13370 PF02355 Protein export membrane protein VCD_RS13375 PF02355 Protein export membrane protein VCD_RS13375 PF13721 SecD export protein N-terminal TM region VCD_RS13375 PF07549 SecD/SecF GG Motif VCD_RS13380 PF02699 Preprotein translocase subunit VCD_RS13385 PF01702 Queuine tRNA-ribosyltransferase VCD_RS13395 PF02547 Queuosine biosynthesis protein VCD_RS13400 PF00571 CBS domain VCD_RS13405 PF00463 Isocitrate lyase family VCD_RS13410 PF01274 Malate synthase VCD_RS13415 PF03466 LysR substrate binding domain VCD_RS13415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS13420 PF10417 C-terminal domain of 1-Cys peroxiredoxin VCD_RS13420 PF00578 AhpC/TSA family VCD_RS13425 PF03932 CutC family VCD_RS13430 PF03976 Polyphosphate kinase 2 (PPK2) VCD_RS13435 PF01895 PhoU domain VCD_RS13440 PF00005 ABC transporter VCD_RS13445 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS13450 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS13455 PF13090 Polyphosphate kinase C-terminal domain 2 VCD_RS13455 PF02503 Polyphosphate kinase middle domain VCD_RS13455 PF17941 Polyphosphate kinase C-terminal domain 1 VCD_RS13455 PF13089 Polyphosphate kinase N-terminal domain VCD_RS13460 PF02541 Ppx/GppA phosphatase family VCD_RS13465 PF12849 PBP superfamily domain VCD_RS13470 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS13470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS13470 PF11808 Phosphate regulon sensor protein PhoR VCD_RS13470 PF00989 PAS fold VCD_RS13475 PF00072 Response regulator receiver domain VCD_RS13475 PF00486 Transcriptional regulatory protein, C terminal VCD_RS13480 PF04381 Putative exonuclease, RdgC VCD_RS13485 PF01136 Peptidase family U32 VCD_RS13485 PF16325 Peptidase family U32 C-terminal domain VCD_RS13490 PF00037 4Fe-4S binding domain VCD_RS13495 PF00881 Nitroreductase family VCD_RS13530 PF17871 AAA lid domain VCD_RS13530 PF07724 AAA domain (Cdc48 subfamily) VCD_RS13530 PF00004 ATPase family associated with various cellular activities (AAA) VCD_RS13530 PF10431 C-terminal, D2-small domain, of ClpB protein VCD_RS13530 PF02861 Clp amino terminal domain, pathogenicity island component VCD_RS13535 PF02578 Multi-copper polyphenol oxidoreductase laccase VCD_RS13540 PF01479 S4 domain VCD_RS13540 PF00849 RNA pseudouridylate synthase VCD_RS13545 PF13525 Outer membrane lipoprotein VCD_RS13550 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VCD_RS13555 PF00800 Prephenate dehydratase VCD_RS13555 PF01817 Chorismate mutase type II VCD_RS13560 PF13416 Bacterial extracellular solute-binding protein VCD_RS13565 PF00563 EAL domain VCD_RS13565 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS13570 PF01931 Protein of unknown function DUF84 VCD_RS13575 PF01371 Trp repressor protein VCD_RS13580 PF01464 Transglycosylase SLT domain VCD_RS13580 PF14718 Soluble lytic murein transglycosylase L domain VCD_RS13585 PF12848 ABC transporter VCD_RS13585 PF00005 ABC transporter VCD_RS13590 PF07238 PilZ domain VCD_RS13595 PF01817 Chorismate mutase type II VCD_RS13595 PF02153 Prephenate dehydrogenase VCD_RS13600 PF00793 DAHP synthetase I family VCD_RS13605 PF06580 Histidine kinase VCD_RS13605 PF07694 5TMR of 5TMR-LYT VCD_RS13610 PF00072 Response regulator receiver domain VCD_RS13610 PF04397 LytTr DNA-binding domain VCD_RS13615 PF00933 Glycosyl hydrolase family 3 N terminal domain VCD_RS13620 PF03702 Anhydro-N-acetylmuramic acid kinase VCD_RS13625 PF13580 SIS domain VCD_RS13640 PF02554 Carbon starvation protein CstA VCD_RS13645 PF02401 LytB protein VCD_RS13650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VCD_RS13655 PF01252 Signal peptidase (SPase) II VCD_RS13660 PF06827 Zinc finger found in FPG and IleRS VCD_RS13660 PF00133 tRNA synthetases class I (I, L, M and V) VCD_RS13660 PF08264 Anticodon-binding domain of tRNA VCD_RS13665 PF01687 Riboflavin kinase VCD_RS13665 PF06574 FAD synthetase VCD_RS13670 PF03023 Lipid II flippase MurJ VCD_RS13675 PF01649 Ribosomal protein S20 VCD_RS13680 PF01022 Bacterial regulatory protein, arsR family VCD_RS13685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS13685 PF03466 LysR substrate binding domain VCD_RS13690 PF02690 Na+/Pi-cotransporter VCD_RS13695 PF00303 Thymidylate synthase VCD_RS13700 PF01790 Prolipoprotein diacylglyceryl transferase VCD_RS13705 PF01925 Sulfite exporter TauE/SafE VCD_RS13710 PF01590 GAF domain VCD_RS13710 PF05524 PEP-utilising enzyme, N-terminal VCD_RS13710 PF02896 PEP-utilising enzyme, TIM barrel domain VCD_RS13710 PF00391 PEP-utilising enzyme, mobile domain VCD_RS13715 PF00293 NUDIX domain VCD_RS13725 PF02976 DNA mismatch repair enzyme MutH VCD_RS13730 PF00248 Aldo/keto reductase family VCD_RS13740 PF02954 Bacterial regulatory protein, Fis family VCD_RS13740 PF00072 Response regulator receiver domain VCD_RS13740 PF00158 Sigma-54 interaction domain VCD_RS13745 PF00152 tRNA synthetases class II (D, K and N) VCD_RS13745 PF01336 OB-fold nucleic acid binding domain VCD_RS13750 PF03462 PCRF domain VCD_RS13750 PF00472 RF-1 domain VCD_RS13755 PF05525 Branched-chain amino acid transport protein VCD_RS13760 PF05175 Methyltransferase small domain VCD_RS13765 PF00270 DEAD/DEAH box helicase VCD_RS13765 PF00271 Helicase conserved C-terminal domain VCD_RS13770 PF16658 Class II release factor RF3, C-terminal domain VCD_RS13770 PF03144 Elongation factor Tu domain 2 VCD_RS13770 PF00009 Elongation factor Tu GTP binding domain VCD_RS13775 PF01381 Helix-turn-helix VCD_RS13775 PF00717 Peptidase S24-like VCD_RS13820 PF06122 Conjugative relaxosome accessory transposon protein VCD_RS13830 PF13495 Phage integrase, N-terminal SAM-like domain VCD_RS13830 PF00589 Phage integrase family VCD_RS13835 PF00186 Dihydrofolate reductase VCD_RS13855 PF12833 Helix-turn-helix domain VCD_RS13880 PF04002 RadC-like JAB domain VCD_RS13885 PF00092 von Willebrand factor type A domain VCD_RS13905 PF08406 CbbQ/NirQ/NorQ C-terminal VCD_RS13905 PF07728 AAA domain (dynein-related subfamily) VCD_RS13920 PF00436 Single-strand binding protein family VCD_RS13945 PF06986 Type-1V conjugative transfer system mating pair stabilisation VCD_RS13950 PF06834 TraU protein VCD_RS13960 PF10502 Signal peptidase, peptidase S26 VCD_RS13975 PF10411 Disulfide bond isomerase protein N-terminus VCD_RS13975 PF13098 Thioredoxin-like domain VCD_RS13980 PF02954 Bacterial regulatory protein, Fis family VCD_RS13980 PF00158 Sigma-54 interaction domain VCD_RS13980 PF00072 Response regulator receiver domain VCD_RS14120 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VCD_RS14120 PF14579 Helix-hairpin-helix motif VCD_RS14120 PF07733 Bacterial DNA polymerase III alpha NTPase domain VCD_RS14120 PF00929 Exonuclease VCD_RS14120 PF11490 DNA polymerase III polC-type N-terminus II VCD_RS14120 PF02811 PHP domain VCD_RS14130 PF00717 Peptidase S24-like VCD_RS14135 PF13438 Domain of unknown function (DUF4113) VCD_RS14135 PF00817 impB/mucB/samB family VCD_RS14135 PF11799 impB/mucB/samB family C-terminal domain VCD_RS14145 PF00809 Pterin binding enzyme VCD_RS14150 PF01636 Phosphotransferase enzyme family VCD_RS14155 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase VCD_RS14160 PF01022 Bacterial regulatory protein, arsR family VCD_RS14165 PF01545 Cation efflux family VCD_RS14175 PF01636 Phosphotransferase enzyme family VCD_RS14180 PF00440 Bacterial regulatory proteins, tetR family VCD_RS14180 PF02909 Tetracyclin repressor-like, C-terminal domain VCD_RS14185 PF07690 Major Facilitator Superfamily VCD_RS14190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VCD_RS14190 PF03466 LysR substrate binding domain VCD_RS14195 PF07690 Major Facilitator Superfamily VCD_RS14220 PF01526 Tn3 transposase DDE domain VCD_RS14220 PF13700 Domain of unknown function (DUF4158) VCD_RS14225 PF11799 impB/mucB/samB family C-terminal domain VCD_RS14225 PF00817 impB/mucB/samB family VCD_RS14225 PF13438 Domain of unknown function (DUF4113) VCD_RS14260 PF03707 Bacterial signalling protein N terminal repeat VCD_RS14260 PF00563 EAL domain VCD_RS14260 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS14275 PF13508 Acetyltransferase (GNAT) domain VCD_RS14280 PF02036 SCP-2 sterol transfer family VCD_RS14285 PF00990 Diguanylate cyclase, GGDEF domain VCD_RS14285 PF00563 EAL domain VCD_RS14285 PF03707 Bacterial signalling protein N terminal repeat VCD_RS14290 PF01136 Peptidase family U32 VCD_RS14295 PF01136 Peptidase family U32 VCD_RS14310 PF13181 Tetratricopeptide repeat VCD_RS14310 PF07719 Tetratricopeptide repeat VCD_RS14315 PF01138 3' exoribonuclease family, domain 1 VCD_RS14315 PF03725 3' exoribonuclease family, domain 2 VCD_RS14315 PF00575 S1 RNA binding domain VCD_RS14315 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VCD_RS14315 PF00013 KH domain VCD_RS14320 PF00312 Ribosomal protein S15 VCD_RS14325 PF01509 TruB family pseudouridylate synthase (N terminal domain) VCD_RS14325 PF09157 Pseudouridine synthase II TruB, C-terminal VCD_RS14325 PF16198 tRNA pseudouridylate synthase B C-terminal domain VCD_RS14330 PF02033 Ribosome-binding factor A VCD_RS14335 PF04760 Translation initiation factor IF-2, N-terminal region VCD_RS14335 PF11987 Translation-initiation factor 2 VCD_RS14335 PF00009 Elongation factor Tu GTP binding domain VCD_RS14335 PF08364 Bacterial translation initiation factor IF-2 associated region VCD_RS14340 PF00575 S1 RNA binding domain VCD_RS14340 PF08529 NusA N-terminal domain VCD_RS14340 PF13184 NusA-like KH domain VCD_RS14345 PF02576 RimP N-terminal domain VCD_RS14345 PF17384 RimP C-terminal SH3 domain VCD_RS14360 PF03840 Preprotein translocase SecG subunit VCD_RS14365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCD_RS14365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCD_RS14365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCD_RS14365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCD_RS14370 PF00809 Pterin binding enzyme VCD_RS14375 PF17862 AAA+ lid domain VCD_RS14375 PF00004 ATPase family associated with various cellular activities (AAA) VCD_RS14375 PF06480 FtsH Extracellular VCD_RS14375 PF01434 Peptidase family M41 VCD_RS14380 PF01728 FtsJ-like methyltransferase VCD_RS14385 PF01985 CRS1 / YhbY (CRM) domain VCD_RS14390 PF01272 Transcription elongation factor, GreA/GreB, C-term VCD_RS14390 PF03449 Transcription elongation factor, N-terminal VCD_RS14395 PF13609 Gram-negative porin VCD_RS14400 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VCD_RS14405 PF01479 S4 domain VCD_RS14405 PF00579 tRNA synthetases class I (W and Y) VCD_RS14410 PF04225 Opacity-associated protein A LysM-like domain VCD_RS14410 PF01551 Peptidase family M23 VCD_RS14415 PF00873 AcrB/AcrD/AcrF family VCD_RS14425 PF01521 Iron-sulphur cluster biosynthesis VCD_RS14435 PF00202 Aminotransferase class-III VCD_RS14445 PF01594 AI-2E family transporter VCD_RS14450 PF08468 Methyltransferase small domain N-terminal VCD_RS14450 PF05175 Methyltransferase small domain VCD_RS14455 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS14455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS14455 PF00072 Response regulator receiver domain VCD_RS14455 PF09308 LuxQ, periplasmic VCD_RS14465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VCD_RS14470 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS14475 PF12911 N-terminal TM domain of oligopeptide transport permease C VCD_RS14475 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS14480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_RS14480 PF00005 ABC transporter VCD_RS14485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCD_RS14485 PF00005 ABC transporter VCD_RS14495 PF01869 BadF/BadG/BcrA/BcrD ATPase family VCD_RS14500 PF00728 Glycosyl hydrolase family 20, catalytic domain VCD_RS14500 PF02838 Glycosyl hydrolase family 20, domain 2 VCD_RS14505 PF06165 Glycosyltransferase family 36 VCD_RS14505 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VCD_RS14510 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VCD_RS14510 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VCD_RS14510 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VCD_RS14510 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VCD_RS14515 PF08402 TOBE domain VCD_RS14515 PF00005 ABC transporter VCD_RS14525 PF13416 Bacterial extracellular solute-binding protein VCD_RS14530 PF00909 Ammonium Transporter Family VCD_RS14535 PF00543 Nitrogen regulatory protein P-II VCD_RS14540 PF06062 Uncharacterised protein family (UPF0231) VCD_RS14545 PF06434 Aconitate hydratase 2 N-terminus VCD_RS14545 PF11791 Aconitate B N-terminal domain VCD_RS14545 PF00330 Aconitase family (aconitate hydratase) VCD_RS14550 PF01734 Patatin-like phospholipase VCD_RS14555 PF00912 Transglycosylase VCD_RS14555 PF00905 Penicillin binding protein transpeptidase domain VCD_RS14555 PF14814 Bifunctional transglycosylase second domain VCD_RS14560 PF04408 Helicase associated domain (HA2) VCD_RS14560 PF00271 Helicase conserved C-terminal domain VCD_RS14560 PF08482 ATP-dependent helicase C-terminal VCD_RS14560 PF00270 DEAD/DEAH box helicase VCD_RS14570 PF03749 Sugar fermentation stimulation protein RE domain VCD_RS14570 PF17746 SfsA N-terminal OB domain VCD_RS14575 PF01258 Prokaryotic dksA/traR C4-type zinc finger VCD_RS14580 PF00749 tRNA synthetases class I (E and Q), catalytic domain VCD_RS14585 PF01743 Poly A polymerase head domain VCD_RS14585 PF12626 Polymerase A arginine-rich C-terminus VCD_RS14585 PF12627 Probable RNA and SrmB- binding site of polymerase A VCD_RS14590 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VCD_RS14650 PF04348 LppC putative lipoprotein VCD_RS14810 PF00528 Binding-protein-dependent transport system inner membrane component VCD_RS14955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCD_RS14955 PF08447 PAS fold VCD_RS15360 PF11867 Domain of unknown function (DUF3387) VCD_RS15360 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCD_RS15360 PF18766 SWI2/SNF2 ATPase VCD_RS15370 PF18766 SWI2/SNF2 ATPase VCD_RS15370 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VCD_RS15370 PF11867 Domain of unknown function (DUF3387) VCD_RS15450 PF13116 Protein of unknown function VCD_RS15450 PF13502 AsmA-like C-terminal region VCD_RS15660 PF00175 Oxidoreductase NAD-binding domain VCD_RS15660 PF00258 Flavodoxin VCD_RS15660 PF00667 FAD binding domain VCD_RS15750 PF16360 GTP-binding GTPase Middle Region VCD_RS15750 PF13167 GTP-binding GTPase N-terminal VCD_RS15750 PF01926 50S ribosome-binding GTPase VCD_RS15755 PF01926 50S ribosome-binding GTPase VCD_RS15755 PF16360 GTP-binding GTPase Middle Region VCD_RS15755 PF13167 GTP-binding GTPase N-terminal VCD_RS15800 PF02080 TrkA-C domain VCD_RS15800 PF03600 Citrate transporter VCD_RS15975 PF02541 Ppx/GppA phosphatase family VCD_RS16025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCD_RS16025 PF00289 Biotin carboxylase, N-terminal domain VCD_RS16025 PF02785 Biotin carboxylase C-terminal domain VCD_RS16130 PF02142 MGS-like domain VCD_RS16130 PF01808 AICARFT/IMPCHase bienzyme VCD_RS16190 PF02719 Polysaccharide biosynthesis protein VCD_RS16380 PF04127 DNA / pantothenate metabolism flavoprotein VCD_RS16380 PF02441 Flavoprotein VCD_RS16405 PF01138 3' exoribonuclease family, domain 1 VCD_RS16405 PF03725 3' exoribonuclease family, domain 2 VCD_RS16530 PF01432 Peptidase family M3 VCD_RS16595 PF01734 Patatin-like phospholipase VCD_RS16665 PF13361 UvrD-like helicase C-terminal domain VCD_RS16665 PF00580 UvrD/REP helicase N-terminal domain VCD_RS16835 PF13932 GidA associated domain VCD_RS16835 PF01134 Glucose inhibited division protein A VCD_RS16920 PF00155 Aminotransferase class I and II VCD_RS16965 PF01063 Amino-transferase class IV VCD_RS17115 PF04055 Radical SAM superfamily VCD_RS17115 PF06968 Biotin and Thiamin Synthesis associated domain VCD_RS17190 PF03109 ABC1 family VCD_RS17250 PF01694 Rhomboid family VCD_RS17250 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VCD_RS17510 PF05922 Peptidase inhibitor I9 VCD_RS17510 PF00082 Subtilase family VCD_RS17510 PF04151 Bacterial pre-peptidase C-terminal domain VCD_RS17745 PF00474 Sodium:solute symporter family VCD_RS18105 PF00263 Bacterial type II and III secretion system protein VCD_RS18105 PF11741 AMIN domain VCD_RS18105 PF03958 Bacterial type II/III secretion system short domain VCD_RS18105 PF07660 Secretin and TonB N terminus short domain VCD_RS18150 PF04055 Radical SAM superfamily VCD_RS18150 PF18693 TRAM domain VCD_RS18150 PF00919 Uncharacterized protein family UPF0004 VCD_RS18170 PF04958 Arginine N-succinyltransferase beta subunit VCD_RS18255 PF17876 Cold shock domain VCD_RS18255 PF00575 S1 RNA binding domain VCD_RS18255 PF08461 Ribonuclease R winged-helix domain VCD_RS18255 PF08206 Ribonuclease B OB domain VCD_RS18255 PF00773 RNB domain VCD_RS18530 PF04552 Sigma-54, DNA binding domain VCD_RS18530 PF04963 Sigma-54 factor, core binding domain VCD_RS18530 PF00309 Sigma-54 factor, Activator interacting domain (AID) VCD_RS18625 PF08264 Anticodon-binding domain of tRNA VCD_RS18625 PF00133 tRNA synthetases class I (I, L, M and V) VCD_RS18625 PF10458 Valyl tRNA synthetase tRNA binding arm VCD_RS18685 PF00682 HMGL-like VCD_RS18685 PF08502 LeuA allosteric (dimerisation) domain VCD_RS18750 PF01812 5-formyltetrahydrofolate cyclo-ligase family VCD_RS18780 PF01494 FAD binding domain VCD_RS18850 PF07650 KH domain VCD_RS18850 PF01926 50S ribosome-binding GTPase VCD_RS18900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS18900 PF00672 HAMP domain VCD_RS18900 PF00072 Response regulator receiver domain VCD_RS18900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VCD_RS18900 PF01627 Hpt domain VCD_RS18900 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS18905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VCD_RS18905 PF00072 Response regulator receiver domain VCD_RS18905 PF01627 Hpt domain VCD_RS18905 PF00512 His Kinase A (phospho-acceptor) domain VCD_RS18905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VCD_RS18905 PF00672 HAMP domain VCD_RS19030 PF01384 Phosphate transporter family VCD_RS19035 PF01384 Phosphate transporter family VCD_RS19090 PF02321 Outer membrane efflux protein VCD_RS19120 PF05728 Uncharacterised protein family (UPF0227) VCD_RS19180 PF00482 Type II secretion system (T2SS), protein F VCD_RS19355 PF01225 Mur ligase family, catalytic domain VCD_RS19355 PF08245 Mur ligase middle domain VCD_RS19355 PF02875 Mur ligase family, glutamate ligase domain VCD_RS19480 PF07516 SecA Wing and Scaffold domain VCD_RS19480 PF01043 SecA preprotein cross-linking domain VCD_RS19480 PF07517 SecA DEAD-like domain VCD_RS19480 PF02810 SEC-C motif VCD_RS19535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCD_RS19535 PF02142 MGS-like domain VCD_RS19535 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VCD_RS19540 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VCD_RS19540 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VCD_RS19540 PF02142 MGS-like domain VCD_RS19650 PF00310 Glutamine amidotransferases class-II VCD_RS19650 PF04898 Glutamate synthase central domain VCD_RS19650 PF01645 Conserved region in glutamate synthase VCD_RS19650 PF01493 GXGXG motif VCD_RS19660 PF01645 Conserved region in glutamate synthase VCD_RS19660 PF04898 Glutamate synthase central domain VCD_RS19660 PF00310 Glutamine amidotransferases class-II VCD_RS19660 PF01493 GXGXG motif VCD_RS19695 PF16199 Radical_SAM C-terminal domain VCD_RS19695 PF04055 Radical SAM superfamily