VC0002 PF00258 Flavodoxin VC0003 PF01926 50S ribosome-binding GTPase VC0003 PF10396 GTP-binding protein TrmE N-terminus VC0003 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE VC0004 PF02096 60Kd inner membrane protein VC0004 PF14849 YidC periplasmic domain VC0005 PF01809 VC0005 VC0006 PF00825 Ribonuclease P VC0007 PF00468 Ribosomal protein L34 VC0008 PF00005 ABC transporter VC0009 PF00528 Binding-protein-dependent transport system inner membrane component VC0010 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC0012 PF00308 Bacterial dnaA protein VC0012 PF08299 Bacterial dnaA protein helix-turn-helix VC0012 PF11638 DnaA N-terminal domain VC0013 PF00712 DNA polymerase III beta subunit, N-terminal domain VC0013 PF02767 DNA polymerase III beta subunit, central domain VC0013 PF02768 DNA polymerase III beta subunit, C-terminal domain VC0014 PF02463 RecF/RecN/SMC N terminal domain VC0015 PF00204 DNA gyrase B VC0015 PF00986 DNA gyrase B subunit, carboxyl terminus VC0015 PF01751 Toprim domain VC0015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC0018 PF00011 Hsp20/alpha crystallin family VC0019 PF00155 Aminotransferase class I and II VC0020 PF02092 VC0020 VC0020 PF05746 DALR anticodon binding domain VC0021 PF02091 Glycyl-tRNA synthetase alpha subunit VC0022 PF01169 VC0022 VC0024 PF01206 Sulfurtransferase TusA VC0026 PF00107 Zinc-binding dehydrogenase VC0026 PF08240 Alcohol dehydrogenase GroES-like domain VC0027 PF00291 Pyridoxal-phosphate dependent enzyme VC0027 PF00585 C-terminal regulatory domain of Threonine dehydratase VC0028 PF00920 Dehydratase family VC0029 PF01063 Aminotransferase class IV VC0030 PF13710 ACT domain VC0031 PF00205 Thiamine pyrophosphate enzyme, central domain VC0031 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VC0031 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VC0032 PF01078 Magnesium chelatase, subunit ChlI VC0032 PF13335 VC0032 VC0032 PF13541 Subunit ChlI of Mg-chelatase VC0033 PF01553 Acyltransferase VC0034 PF01323 DSBA-like thioredoxin domain VC0035 PF01636 Phosphotransferase enzyme family VC0036 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VC0036 PF12801 VC0036 VC0036 PF13746 4Fe-4S dicluster domain VC0037 PF06288 Protein of unknown function (DUF1040) VC0039 PF07070 VC0039 VC0040 PF03006 VC0040 VC0041 PF11355 VC0041 VC0042 PF02386 Cation transport protein VC0043 PF02080 TrkA-C domain VC0043 PF02254 TrkA-N domain VC0044 PF01029 NusB family VC0044 PF01189 NOL1/NOP2/sun family VC0045 PF00551 Formyl transferase VC0045 PF02911 Formyl transferase, C-terminal domain VC0046 PF01327 Polypeptide deformylase VC0047 PF01476 LysM domain VC0048 PF02481 DNA recombination-mediator protein A VC0049 PF04361 VC0049 VC0050 PF01396 VC0050 VC0051 PF02222 ATP-grasp domain VC0052 PF00731 AIR carboxylase VC0054 PF01300 Telomere recombination VC0055 PF01218 Coproporphyrinogen III oxidase VC0056 PF01488 Shikimate / quinate 5-dehydrogenase VC0056 PF08501 Shikimate dehydrogenase substrate binding domain VC0057 PF07369 Protein of unknown function (DUF1488) VC0058 PF00132 Bacterial transferase hexapeptide (six repeats) VC0060 PF02537 VC0060 VC0061 PF01964 ThiC family VC0061 PF13667 ThiC-associated domain VC0062 PF02581 Thiamine monophosphate synthase/TENI VC0063 PF00899 ThiF family VC0064 PF02597 ThiS family VC0065 PF05690 Thiazole biosynthesis protein ThiG VC0066 PF04055 Radical SAM superfamily VC0066 PF06968 Biotin and Thiamin Synthesis associated domain VC0067 PF00557 Metallopeptidase family M24 VC0067 PF01321 Creatinase/Prolidase N-terminal domain VC0067 PF16188 VC0067 VC0067 PF16189 VC0067 VC0068 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC0068 PF03466 LysR substrate binding domain VC0069 PF07690 Major Facilitator Superfamily VC0071 PF01037 AsnC family VC0071 PF13404 AsnC-type helix-turn-helix domain VC0072 PF00563 EAL domain VC0072 PF00990 GGDEF domain VC0072 PF13426 PAS domain VC0073 PF04445 Putative SAM-dependent methyltransferase VC0075 PF00892 EamA-like transporter family VC0076 PF00582 Universal stress protein family VC0078 PF00210 Ferritin-like domain VC0079 PF10625 VC0079 VC0080 PF03486 HI0933-like protein VC0081 PF00892 EamA-like transporter family VC0082 PF02646 VC0082 VC0083 PF01209 ubiE/COQ5 methyltransferase family VC0084 PF02036 SCP-2 sterol transfer family VC0085 PF03109 VC0085 VC0086 PF02416 mttA/Hcf106 family VC0087 PF02416 mttA/Hcf106 family VC0088 PF00902 Sec-independent protein translocase protein (TatC) VC0089 PF00034 Cytochrome c VC0089 PF03150 Di-haem cytochrome c peroxidase VC0090 PF01554 MatE VC0091 PF04072 Leucine carboxyl methyltransferase VC0092 PF00717 Peptidase S24-like VC0092 PF01726 LexA DNA binding domain VC0093 PF01553 Acyltransferase VC0094 PF01040 UbiA prenyltransferase family VC0095 PF04345 Chorismate lyase VC0097 PF03748 VC0097 VC0098 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC0098 PF08447 PAS fold VC0098 PF08448 PAS fold VC0099 PF01694 Rhomboid family VC0099 PF12122 Protein of unknown function (DUF3582) VC0100 PF00581 Rhodanese-like domain VC0103 PF01026 TatD related DNase VC0105 PF00490 Delta-aminolevulinic acid dehydratase VC0106 PF13673 Acetyltransferase (GNAT) domain VC0108 PF00476 DNA polymerase family A VC0108 PF01367 5'-3' exonuclease, C-terminal SAM fold VC0108 PF01612 3'-5' exonuclease VC0108 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VC0111 PF01926 50S ribosome-binding GTPase VC0112 PF00034 Cytochrome c VC0113 PF13489 Methyltransferase domain VC0114 PF04220 VC0114 VC0115 PF10675 VC0115 VC0116 PF04055 Radical SAM superfamily VC0116 PF06969 HemN C-terminal domain VC0117 PF07219 VC0117 VC0118 PF04375 VC0118 VC0119 PF02602 Uroporphyrinogen-III synthase HemD VC0120 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VC0120 PF03900 Porphobilinogen deaminase, C-terminal domain VC0122 PF01295 VC0122 VC0122 PF12633 VC0122 VC0123 PF01491 Frataxin-like domain VC0124 PF13627 VC0124 VC0125 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VC0125 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VC0126 PF01678 Diaminopimelate epimerase VC0127 PF04340 Protein of unknown function, DUF484 VC0128 PF00589 Phage integrase family VC0128 PF02899 Phage integrase, N-terminal SAM-like domain VC0129 PF13419 Haloacid dehalogenase-like hydrolase VC0130 PF00563 EAL domain VC0130 PF00990 GGDEF domain VC0130 PF08495 VC0130 VC0130 PF10442 VC0130 VC0131 PF03942 VC0131 VC0134 PF08282 haloacid dehalogenase-like hydrolase VC0135 PF12146 Putative lysophospholipase VC0136 PF01810 VC0136 VC0137 PF00563 EAL domain VC0137 PF08668 HDOD domain VC0139 PF00210 Ferritin-like domain VC0140 PF10694 Protein of unknown function (DUF2500) VC0142 PF13643 VC0142 VC0144 PF07947 VC0144 VC0145 PF06611 VC0145 VC0146 PF03602 Conserved hypothetical protein 95 VC0147 PF00448 SRP54-type protein, GTPase domain VC0147 PF02881 SRP54-type protein, helical bundle domain VC0148 PF00005 ABC transporter VC0149 PF02687 VC0149 VC0150 PF00140 Sigma-70 factor, region 1 VC0150 PF04542 Sigma-70 region 2 VC0150 PF04545 Sigma-70, region 4 VC0151 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VC0151 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC0152 PF00440 Bacterial regulatory proteins, tetR family VC0153 PF07226 VC0153 VC0154 PF05958 tRNA (Uracil-5-)-methyltransferase VC0156 PF00593 TonB dependent receptor VC0156 PF07715 TonB-dependent Receptor Plug Domain VC0157 PF00082 Subtilase family VC0157 PF04151 Bacterial pre-peptidase C-terminal domain VC0157 PF05922 Peptidase inhibitor I9 VC0158 PF01177 Asp/Glu/Hydantoin racemase VC0159 PF00076 RNA recognition motif VC0161 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC0161 PF03466 LysR substrate binding domain VC0162 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VC0162 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain VC0163 PF04380 VC0163 VC0164 PF00873 AcrB/AcrD/AcrF family VC0165 PF16576 VC0165 VC0166 PF00440 Bacterial regulatory proteins, tetR family VC0167 PF00580 UvrD/REP helicase N-terminal domain VC0167 PF13361 UvrD-like helicase C-terminal domain VC0168 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VC0170 PF00005 ABC transporter VC0170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC0171 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VC0172 PF00528 Binding-protein-dependent transport system inner membrane component VC0173 PF00528 Binding-protein-dependent transport system inner membrane component VC0173 PF12911 VC0173 VC0174 PF05036 Sporulation related domain VC0175 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VC0176 PF12844 Helix-turn-helix domain VC0178 PF01734 Patatin-like phospholipase VC0180 PF00899 ThiF family VC0180 PF14461 Prokaryotic E2 family B VC0181 PF14464 Prokaryotic homologs of the JAB domain VC0185 PF00589 Phage integrase family VC0186 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VC0186 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC0187 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ VC0188 PF01432 Peptidase family M3 VC0190 PF00580 UvrD/REP helicase N-terminal domain VC0190 PF13361 UvrD-like helicase C-terminal domain VC0191 PF01810 VC0191 VC0192 PF02311 AraC-like ligand binding domain VC0192 PF12833 Helix-turn-helix domain VC0194 PF01019 Gamma-glutamyltranspeptidase VC0195 PF00892 EamA-like transporter family VC0196 PF00270 DEAD/DEAH box helicase VC0196 PF00271 Helicase conserved C-terminal domain VC0196 PF00570 HRDC domain VC0196 PF09382 RQC domain VC0196 PF16124 VC0196 VC0197 PF12305 VC0197 VC0199 PF00005 ABC transporter VC0199 PF00664 ABC transporter transmembrane region VC0200 PF00593 TonB dependent receptor VC0200 PF07715 TonB-dependent Receptor Plug Domain VC0201 PF00005 ABC transporter VC0202 PF01497 Periplasmic binding protein VC0203 PF01032 FecCD transport family VC0204 PF01380 SIS domain VC0204 PF01418 Helix-turn-helix domain, rpiR family VC0206 PF13580 SIS domain VC0207 PF00367 phosphotransferase system, EIIB VC0207 PF02378 Phosphotransferase system, EIIC VC0208 PF03350 VC0208 VC0209 PF03755 VC0209 VC0209 PF08340 VC0209 VC0210 PF01138 3' exoribonuclease family, domain 1 VC0210 PF03725 3' exoribonuclease family, domain 2 VC0211 PF00156 Phosphoribosyl transferase domain VC0212 PF03279 VC0212 VC0213 PF03279 VC0213 VC0214 PF00440 Bacterial regulatory proteins, tetR family VC0215 PF02441 Flavoprotein VC0215 PF04127 DNA / pantothenate metabolism flavoprotein VC0216 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC0216 PF00672 HAMP domain VC0216 PF17200 VC0216 VC0217 PF04002 RadC-like JAB domain VC0218 PF00830 Ribosomal L28 family VC0219 PF00471 Ribosomal protein L33 VC0221 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VC0221 PF06827 Zinc finger found in FPG and IleRS VC0221 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VC0222 PF01467 Cytidylyltransferase VC0223 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VC0224 PF00535 Glycosyl transferase family 2 VC0225 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VC0227 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family VC0228 PF07507 VC0228 VC0229 PF07507 VC0229 VC0232 PF08282 haloacid dehalogenase-like hydrolase VC0233 PF00534 Glycosyl transferases group 1 VC0233 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VC0234 PF04488 Glycosyltransferase sugar-binding region containing DXD motif VC0235 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VC0236 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VC0237 PF04932 VC0237 VC0238 PF00132 Bacterial transferase hexapeptide (six repeats) VC0239 PF01522 Polysaccharide deacetylase VC0239 PF13439 Glycosyltransferase Family 4 VC0240 PF01370 NAD dependent epimerase/dehydratase family VC0241 PF00483 Nucleotidyl transferase VC0241 PF01050 Mannose-6-phosphate isomerase VC0242 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VC0242 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VC0242 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VC0242 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VC0243 PF16363 VC0243 VC0244 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VC0245 PF00534 Glycosyl transferases group 1 VC0246 PF01061 VC0246 VC0247 PF00005 ABC transporter VC0249 PF00501 AMP-binding enzyme VC0249 PF13193 AMP-binding enzyme C-terminal domain VC0250 PF00465 Iron-containing alcohol dehydrogenase VC0251 PF04443 VC0251 VC0251 PF05893 Acyl-CoA reductase (LuxC) VC0252 PF00132 Bacterial transferase hexapeptide (six repeats) VC0255 PF05575 VC0255 VC0256 PF01527 Transposase VC0257 PF00665 Integrase core domain VC0257 PF13276 VC0257 VC0259 PF00534 Glycosyl transferases group 1 VC0259 PF13439 Glycosyltransferase Family 4 VC0260 PF02719 Polysaccharide biosynthesis protein VC0262 PF01370 NAD dependent epimerase/dehydratase family VC0263 PF02397 VC0263 VC0264 PF00753 Metallo-beta-lactamase superfamily VC0264 PF07521 RNA-metabolising metallo-beta-lactamase VC0264 PF10996 Beta-Casp domain VC0265 PF00924 Mechanosensitive ion channel VC0266 PF03167 Uracil DNA glycosylase superfamily VC0267 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VC0268 PF04222 Protein of unknown function (DUF416) VC0269 PF01238 Phosphomannose isomerase type I VC0270 PF00480 ROK family VC0271 PF00571 CBS domain VC0271 PF01595 VC0271 VC0273 PF00216 Bacterial DNA-binding protein VC0274 PF07356 VC0274 VC0274 PF08139 VC0274 VC0275 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VC0275 PF02843 Phosphoribosylglycinamide synthetase, C domain VC0275 PF02844 Phosphoribosylglycinamide synthetase, N domain VC0276 PF01808 AICARFT/IMPCHase bienzyme VC0276 PF02142 MGS-like domain VC0277 PF13411 MerR HTH family regulatory protein VC0278 PF00486 Transcriptional regulatory protein, C terminal VC0280 PF13520 Amino acid permease VC0281 PF01276 Orn/Lys/Arg decarboxylase, major domain VC0281 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VC0281 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VC0282 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC0282 PF00672 HAMP domain VC0282 PF17200 VC0282 VC0283 PF16357 VC0283 VC0285 PF01081 KDPG and KHG aldolase VC0286 PF02447 VC0286 VC0287 PF01202 Shikimate kinase VC0288 PF00920 Dehydratase family VC0289 PF00356 Bacterial regulatory proteins, lacI family VC0289 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VC0290 PF02954 Bacterial regulatory protein, Fis family VC0291 PF01207 Dihydrouridine synthase (Dus) VC0293 PF06325 Ribosomal protein L11 methyltransferase (PrmA) VC0295 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain VC0295 PF02785 Biotin carboxylase C-terminal domain VC0295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VC0296 PF00364 Biotin-requiring enzyme VC0297 PF01220 Dehydroquinase class II VC0298 PF00501 AMP-binding enzyme VC0298 PF13193 AMP-binding enzyme C-terminal domain VC0298 PF16177 VC0298 VC0299 PF00929 Exonuclease VC0300 PF00027 Cyclic nucleotide-binding domain VC0300 PF03445 VC0300 VC0300 PF10335 VC0300 VC0302 PF12832 MFS_1 like family VC0303 PF00072 Response regulator receiver domain VC0303 PF00512 His Kinase A (phospho-acceptor) domain VC0303 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC0303 PF12860 VC0303 VC0304 PF02541 Ppx/GppA phosphatase family VC0305 PF00270 DEAD/DEAH box helicase VC0305 PF00271 Helicase conserved C-terminal domain VC0306 PF00085 Thioredoxin VC0307 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VC0307 PF07497 Rho termination factor, RNA-binding domain VC0307 PF07498 Rho termination factor, N-terminal domain VC0309 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VC0311 PF00111 2Fe-2S iron-sulfur cluster binding domain VC0312 PF00175 Oxidoreductase NAD-binding domain VC0312 PF00970 Oxidoreductase FAD-binding domain VC0315 PF13091 PLD-like domain VC0317 PF13508 Acetyltransferase (GNAT) domain VC0318 PF01565 FAD binding domain VC0318 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VC0319 PF02237 Biotin protein ligase C terminal domain VC0319 PF03099 Biotin/lipoate A/B protein ligase family VC0319 PF08279 HTH domain VC0320 PF00485 Phosphoribulokinase / Uridine kinase family VC0321 PF00009 Elongation factor Tu GTP binding domain VC0321 PF03143 Elongation factor Tu C-terminal domain VC0321 PF03144 Elongation factor Tu domain 2 VC0322 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VC0323 PF00467 KOW motif VC0323 PF02357 Transcription termination factor nusG VC0324 PF00298 Ribosomal protein L11, RNA binding domain VC0324 PF03946 Ribosomal protein L11, N-terminal domain VC0325 PF00687 Ribosomal protein L1p/L10e family VC0326 PF00466 Ribosomal protein L10 VC0327 PF00542 Ribosomal protein L7/L12 C-terminal domain VC0327 PF16320 VC0327 VC0328 PF00562 RNA polymerase Rpb2, domain 6 VC0328 PF04560 RNA polymerase Rpb2, domain 7 VC0328 PF04561 RNA polymerase Rpb2, domain 2 VC0328 PF04563 RNA polymerase beta subunit VC0328 PF04565 RNA polymerase Rpb2, domain 3 VC0328 PF10385 RNA polymerase beta subunit external 1 domain VC0329 PF00623 RNA polymerase Rpb1, domain 2 VC0329 PF04983 RNA polymerase Rpb1, domain 3 VC0329 PF04997 RNA polymerase Rpb1, domain 1 VC0329 PF04998 RNA polymerase Rpb1, domain 5 VC0329 PF05000 RNA polymerase Rpb1, domain 4 VC0330 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VC0331 PF00293 NUDIX domain VC0331 PF09297 NADH pyrophosphatase zinc ribbon domain VC0332 PF01208 Uroporphyrinogen decarboxylase (URO-D) VC0333 PF00440 Bacterial regulatory proteins, tetR family VC0333 PF13972 Bacterial transcriptional repressor VC0335 PF01551 Peptidase family M23 VC0336 PF01676 Metalloenzyme superfamily VC0336 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VC0337 PF00892 EamA-like transporter family VC0338 PF00939 Sodium:sulfate symporter transmembrane region VC0339 PF02666 VC0339 VC0340 PF03193 Protein of unknown function, DUF258 VC0341 PF00929 Exonuclease VC0342 PF08331 VC0342 VC0342 PF13484 VC0342 VC0343 PF02367 Uncharacterised P-loop hydrolase UPF0079 VC0344 PF01476 LysM domain VC0344 PF01520 N-acetylmuramoyl-L-alanine amidase VC0344 PF11741 AMIN domain VC0345 PF01119 DNA mismatch repair protein, C-terminal domain VC0345 PF08676 MutL C terminal dimerisation domain VC0345 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC0346 PF01715 IPP transferase VC0348 PF01926 50S ribosome-binding GTPase VC0348 PF13167 VC0348 VC0348 PF16360 VC0348 VC0349 PF01145 SPFH domain / Band 7 family VC0349 PF12221 VC0349 VC0350 PF01145 SPFH domain / Band 7 family VC0351 PF09838 VC0351 VC0352 PF04102 SlyX VC0353 PF00400 WD domain, G-beta repeat VC0354 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VC0354 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VC0355 PF08348 VC0355 VC0355 PF13309 VC0355 VC0356 PF02635 DsrE/DsrF-like family VC0357 PF02635 DsrE/DsrF-like family VC0358 PF04077 DsrH like protein VC0359 PF00164 Ribosomal protein S12/S23 VC0360 PF00177 Ribosomal protein S7p/S5e VC0361 PF00009 Elongation factor Tu GTP binding domain VC0361 PF00679 Elongation factor G C-terminus VC0361 PF03144 Elongation factor Tu domain 2 VC0361 PF03764 Elongation factor G, domain IV VC0361 PF14492 Elongation Factor G, domain II VC0362 PF00009 Elongation factor Tu GTP binding domain VC0362 PF03143 Elongation factor Tu C-terminal domain VC0362 PF03144 Elongation factor Tu domain 2 VC0364 PF04324 BFD-like [2Fe-2S] binding domain VC0365 PF00210 Ferritin-like domain VC0366 PF01250 Ribosomal protein S6 VC0367 PF00436 Single-strand binding protein family VC0368 PF01084 Ribosomal protein S18 VC0369 PF01281 Ribosomal protein L9, N-terminal domain VC0369 PF03948 Ribosomal protein L9, C-terminal domain VC0370 PF04338 Protein of unknown function, DUF481 VC0371 PF00772 DnaB-like helicase N terminal domain VC0371 PF03796 DnaB-like helicase C terminal domain VC0372 PF00842 Alanine racemase, C-terminal domain VC0372 PF01168 Alanine racemase, N-terminal domain VC0373 PF01894 Uncharacterised protein family UPF0047 VC0374 PF00342 Phosphoglucose isomerase VC0376 PF12706 Beta-lactamase superfamily domain VC0377 PF13690 Chemotaxis phosphatase CheX VC0378 PF01475 Ferric uptake regulator family VC0379 PF01207 Dihydrouridine synthase (Dus) VC0379a PF09583 VC0379a VC0381 PF13505 Outer membrane protein beta-barrel domain VC0384 PF00175 Oxidoreductase NAD-binding domain VC0384 PF00258 Flavodoxin VC0384 PF00667 FAD binding domain VC0385 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VC0385 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VC0386 PF01507 Phosphoadenosine phosphosulfate reductase family VC0389 PF00999 Sodium/hydrogen exchanger family VC0390 PF00809 Pterin binding enzyme VC0390 PF02310 B12 binding domain VC0390 PF02574 Homocysteine S-methyltransferase VC0390 PF02607 B12 binding domain VC0390 PF02965 Vitamin B12 dependent methionine synthase, activation domain VC0391 PF00696 Amino acid kinase family VC0392 PF00266 Aminotransferase class-V VC0393 PF04932 VC0393 VC0393 PF11846 VC0393 VC0393 PF15864 VC0393 VC0394 PF00005 ABC transporter VC0395 PF00483 Nucleotidyl transferase VC0396 PF00196 Bacterial regulatory proteins, luxR family VC0397 PF00436 Single-strand binding protein family VC0398 PF00563 EAL domain VC0398 PF00990 GGDEF domain VC0398 PF17157 VC0398 VC0400 PF04612 Type II secretion system (T2SS), protein M VC0402 PF00263 VC0402 VC0402 PF07655 VC0402 VC0403 PF13401 AAA domain VC0404 PF14559 Tetratricopeptide repeat VC0405 PF00437 Type II/IV secretion system protein VC0405 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VC0406 PF00482 Type II secretion system (T2SS), protein F VC0408 PF13633 Prokaryotic N-terminal methylation site VC0409 PF13633 Prokaryotic N-terminal methylation site VC0410 PF07963 Prokaryotic N-terminal methylation motif VC0411 PF13633 Prokaryotic N-terminal methylation site VC0412 PF07963 Prokaryotic N-terminal methylation motif VC0415 PF06723 MreB/Mbl protein VC0416 PF04085 rod shape-determining protein MreC VC0417 PF04093 VC0417 VC0418 PF02545 Maf-like protein VC0419 PF00575 S1 RNA binding domain VC0419 PF10150 Ribonuclease E/G family VC0420 PF13116 VC0420 VC0420 PF13502 VC0420 VC0421 PF00795 Carbon-nitrogen hydrolase VC0422 PF01523 Putative modulator of DNA gyrase VC0423 PF02274 Amidinotransferase VC0424 PF06877 Regulator of ribonuclease activity B VC0426 PF09834 VC0426 VC0428 PF00582 Universal stress protein family VC0429 PF06808 VC0429 VC0429 PF11874 VC0429 VC0430 PF16868 VC0430 VC0431 PF01316 Arginine repressor, DNA binding domain VC0431 PF02863 Arginine repressor, C-terminal domain VC0432 PF00056 lactate/malate dehydrogenase, NAD binding domain VC0432 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VC0433 PF13520 Amino acid permease VC0434 PF00348 Polyprenyl synthetase VC0435 PF00829 Ribosomal prokaryotic L21 protein VC0436 PF01016 Ribosomal L27 protein VC0437 PF01018 GTP1/OBG VC0437 PF01926 50S ribosome-binding GTPase VC0438 PF06738 VC0438 VC0439 PF12821 VC0439 VC0440 PF00186 Dihydrofolate reductase VC0441 PF00149 Calcineurin-like phosphoesterase VC0442 PF04379 Protein of unknown function (DUF525) VC0443 PF00398 Ribosomal RNA adenine dimethylase VC0444 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VC0445 PF09312 SurA N-terminal domain VC0445 PF13616 PPIC-type PPIASE domain VC0446 PF03968 OstA-like protein VC0446 PF04453 Organic solvent tolerance protein VC0447 PF00226 DnaJ domain VC0447 PF05099 Tellurite resistance protein TerB VC0449 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC0449 PF17200 VC0449 VC0450 PF01464 Transglycosylase SLT domain VC0450 PF11873 Domain of unknown function (DUF3393) VC0451 PF04362 Bacterial Fe(2+) trafficking VC0452 PF00633 Helix-hairpin-helix motif VC0452 PF00730 HhH-GPD superfamily base excision DNA repair protein VC0452 PF14815 NUDIX domain VC0453 PF02390 Putative methyltransferase VC0454 PF04960 Glutaminase VC0455 PF04055 Radical SAM superfamily VC0455 PF06969 HemN C-terminal domain VC0456 PF01725 Ham1 family VC0457 PF14467 Domain of unknown function (DUF4426) VC0458 PF02594 Uncharacterised ACR, YggU family COG1872 VC0459 PF02325 VC0459 VC0460 PF03807 NADP oxidoreductase coenzyme F420-dependent VC0460 PF14748 Pyrroline-5-carboxylate reductase dimerisation VC0461 PF01168 Alanine racemase, N-terminal domain VC0462 PF00437 Type II/IV secretion system protein VC0463 PF00437 Type II/IV secretion system protein VC0464 PF00196 Bacterial regulatory proteins, luxR family VC0465 PF00579 tRNA synthetases class I (W and Y) VC0465 PF01479 S4 domain VC0466 PF03652 Uncharacterised protein family (UPF0081) VC0467 PF02622 Uncharacterized ACR, COG1678 VC0468 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VC0468 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VC0469 PF04452 RNA methyltransferase VC0470 PF04231 Endonuclease I VC0471 PF10263 VC0471 VC0472 PF00438 S-adenosylmethionine synthetase, N-terminal domain VC0472 PF02772 S-adenosylmethionine synthetase, central domain VC0472 PF02773 S-adenosylmethionine synthetase, C-terminal domain VC0473 PF00456 Transketolase, thiamine diphosphate binding domain VC0473 PF02779 Transketolase, pyrimidine binding domain VC0473 PF02780 Transketolase, C-terminal domain VC0474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC0474 PF03466 LysR substrate binding domain VC0475 PF00593 TonB dependent receptor VC0475 PF07715 TonB-dependent Receptor Plug Domain VC0476 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC0476 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VC0477 PF00162 Phosphoglycerate kinase VC0478 PF01116 Fructose-bisphosphate aldolase class-II VC0480 PF00924 Mechanosensitive ion channel VC0480 PF05552 Conserved TM helix VC0481 PF01810 VC0481 VC0482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC0482 PF03466 LysR substrate binding domain VC0483 PF04402 Protein of unknown function (DUF541) VC0485 PF00224 Pyruvate kinase, barrel domain VC0485 PF02887 Pyruvate kinase, alpha/beta domain VC0486 PF00455 VC0486 VC0486 PF08220 DeoR-like helix-turn-helix domain VC0487 PF01380 SIS domain VC0487 PF13522 Glutamine amidotransferase domain VC0488 PF03480 Bacterial extracellular solute-binding protein, family 7 VC0489 PF01553 Acyltransferase VC0489 PF13444 Acetyltransferase (GNAT) domain VC0490 PF12532 VC0490 VC0494 PF11726 VC0494 VC0495 PF11726 VC0495 VC0496 PF11726 VC0496 VC0497 PF05930 Prophage CP4-57 regulatory protein (AlpA) VC0498 PF00075 RNase H VC0502 PF13633 Prokaryotic N-terminal methylation site VC0503 PF01551 Peptidase family M23 VC0503 PF04225 Opacity-associated protein A LysM-like domain VC0506 PF13280 VC0506 VC0508 PF10980 Protein of unknown function (DUF2787) VC0509 PF10980 Protein of unknown function (DUF2787) VC0510 PF04002 RadC-like JAB domain VC0512 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC0512 PF08447 PAS fold VC0513 PF12833 Helix-turn-helix domain VC0514 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC0514 PF00672 HAMP domain VC0514 PF02743 Cache domain VC0515 PF00563 EAL domain VC0515 PF08668 HDOD domain VC0516 PF00589 Phage integrase family VC0516 PF13356 Domain of unknown function (DUF4102) VC0516 PF14659 Phage integrase, N-terminal SAM-like domain VC0517 PF00140 Sigma-70 factor, region 1 VC0517 PF03979 Sigma-70 factor, region 1 VC0517 PF04539 Sigma-70 region 3 VC0517 PF04542 Sigma-70 region 2 VC0517 PF04545 Sigma-70, region 4 VC0517 PF04546 Sigma-70, non-essential region VC0519 PF09424 Yqey-like protein VC0520 PF01165 Ribosomal protein S21 VC0522 PF00561 alpha/beta hydrolase fold VC0523 PF02660 VC0523 VC0524 PF02152 Dihydroneopterin aldolase VC0525 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VC0526 PF02673 VC0526 VC0527 PF04977 Septum formation initiator VC0528 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VC0529 PF02542 YgbB family VC0530 PF01142 tRNA pseudouridine synthase D (TruD) VC0531 PF01975 Survival protein SurE VC0532 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) VC0533 PF01476 LysM domain VC0533 PF01551 Peptidase family M23 VC0534 PF00140 Sigma-70 factor, region 1 VC0534 PF04539 Sigma-70 region 3 VC0534 PF04542 Sigma-70 region 2 VC0534 PF04545 Sigma-70, region 4 VC0535 PF00488 MutS domain V VC0535 PF01624 MutS domain I VC0535 PF05188 MutS domain II VC0535 PF05190 MutS family domain IV VC0535 PF05192 MutS domain III VC0537 PF00291 Pyridoxal-phosphate dependent enzyme VC0538 PF13531 Bacterial extracellular solute-binding protein VC0539 PF00528 Binding-protein-dependent transport system inner membrane component VC0540 PF00528 Binding-protein-dependent transport system inner membrane component VC0541 PF00005 ABC transporter VC0541 PF12857 VC0541 VC0542 PF02464 Competence-damaged protein VC0543 PF00154 recA bacterial DNA recombination protein VC0544 PF02631 RecX family VC0545 PF01411 tRNA synthetases class II (A) VC0545 PF02272 DHHA1 domain VC0545 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VC0547 PF00696 Amino acid kinase family VC0548 PF02599 Global regulator protein family VC0549 PF04277 VC0549 VC0550 PF00364 Biotin-requiring enzyme VC0550 PF00682 HMGL-like VC0550 PF02436 Conserved carboxylase domain VC0551 PF03977 VC0551 VC0552 PF08240 Alcohol dehydrogenase GroES-like domain VC0552 PF13602 Zinc-binding dehydrogenase VC0553 PF09335 VC0553 VC0554 PF00675 Insulinase (Peptidase family M16) VC0554 PF05193 Peptidase M16 inactive domain VC0556 PF04262 Glutamate-cysteine ligase VC0557 PF02664 S-Ribosylhomocysteinase (LuxS) VC0558 PF00571 CBS domain VC0558 PF01595 VC0558 VC0558 PF03471 Transporter associated domain VC0559 PF01578 VC0559 VC0560 PF00448 SRP54-type protein, GTPase domain VC0560 PF02881 SRP54-type protein, helical bundle domain VC0560 PF02978 Signal peptide binding domain VC0561 PF00886 Ribosomal protein S16 VC0562 PF01782 RimM N-terminal domain VC0562 PF05239 PRC-barrel domain VC0563 PF01746 tRNA (Guanine-1)-methyltransferase VC0564 PF01245 Ribosomal protein L19 VC0565 PF13180 PDZ domain VC0565 PF13365 Trypsin-like peptidase domain VC0566 PF00595 PDZ domain (Also known as DHR or GLGF) VC0566 PF13180 PDZ domain VC0566 PF13365 Trypsin-like peptidase domain VC0567 PF06295 VC0567 VC0568 PF03969 AFG1-like ATPase VC0570 PF00572 Ribosomal protein L13 VC0571 PF00380 Ribosomal protein S9/S16 VC0573 PF00355 Rieske [2Fe-2S] domain VC0573 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VC0574 PF00032 Cytochrome b(C-terminal)/b6/petD VC0574 PF00033 Cytochrome b(N-terminal)/b6/petB VC0575 PF02167 Cytochrome C1 family VC0576 PF00043 Glutathione S-transferase, C-terminal domain VC0576 PF13417 Glutathione S-transferase, N-terminal domain VC0577 PF04386 Stringent starvation protein B VC0578 PF04972 BON domain VC0579 PF13580 SIS domain VC0580 PF02021 Uncharacterised protein family UPF0102 VC0581 PF04348 LppC putative lipoprotein VC0582 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VC0585 PF00156 Phosphoribosyl transferase domain VC0586 PF00484 Carbonic anhydrase VC0587 PF00916 VC0587 VC0587 PF01740 STAS domain VC0589 PF00005 ABC transporter VC0590 PF01061 VC0590 VC0591 PF02569 Pantoate-beta-alanine ligase VC0592 PF02548 Ketopantoate hydroxymethyltransferase VC0593 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VC0594 PF01743 Poly A polymerase head domain VC0594 PF12626 Polymerase A arginine-rich C-terminus VC0594 PF12627 Probable RNA and SrmB- binding site of polymerase A VC0595 PF00749 tRNA synthetases class I (E and Q), catalytic domain VC0596 PF01258 Prokaryotic dksA/traR C4-type zinc finger VC0597 PF03749 Sugar fermentation stimulation protein VC0600 PF12697 Alpha/beta hydrolase family VC0601 PF00270 DEAD/DEAH box helicase VC0601 PF00271 Helicase conserved C-terminal domain VC0601 PF04408 Helicase associated domain (HA2) VC0601 PF08482 VC0601 VC0602 PF00905 Penicillin binding protein transpeptidase domain VC0602 PF00912 Transglycosylase VC0602 PF14814 Bifunctional transglycosylase second domain VC0603 PF01734 Patatin-like phospholipase VC0603 PF07244 Surface antigen variable number repeat VC0604 PF00330 Aconitase family (aconitate hydratase) VC0604 PF06434 Aconitate hydratase 2 N-terminus VC0604 PF11791 Aconitate B N-terminal domain VC0605 PF06062 VC0605 VC0606 PF00543 Nitrogen regulatory protein P-II VC0608 PF13343 Bacterial extracellular solute-binding protein VC0609 PF00528 Binding-protein-dependent transport system inner membrane component VC0610 PF00005 ABC transporter VC0610 PF08402 TOBE domain VC0611 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VC0611 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VC0611 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VC0611 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VC0612 PF06165 Glycosyltransferase family 36 VC0612 PF17167 VC0612 VC0613 PF00728 Glycosyl hydrolase family 20, catalytic domain VC0613 PF02838 Glycosyl hydrolase family 20, domain 2 VC0614 PF01869 BadF/BadG/BcrA/BcrD ATPase family VC0615 PF00759 Glycosyl hydrolase family 9 VC0615 PF02927 N-terminal ig-like domain of cellulase VC0616 PF00005 ABC transporter VC0616 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC0617 PF00005 ABC transporter VC0617 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC0618 PF00528 Binding-protein-dependent transport system inner membrane component VC0618 PF12911 VC0618 VC0619 PF00528 Binding-protein-dependent transport system inner membrane component VC0620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VC0622 PF00072 Response regulator receiver domain VC0622 PF00512 His Kinase A (phospho-acceptor) domain VC0622 PF00672 HAMP domain VC0622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC0622 PF13188 PAS domain VC0623 PF05175 Methyltransferase small domain VC0623 PF08468 Methyltransferase small domain N-terminal VC0624 PF01594 VC0624 VC0626 PF00202 Aminotransferase class-III VC0627 PF01521 Iron-sulphur cluster biosynthesis VC0628 PF16576 VC0628 VC0629 PF00873 AcrB/AcrD/AcrF family VC0630 PF01551 Peptidase family M23 VC0630 PF08525 VC0630 VC0631 PF00579 tRNA synthetases class I (W and Y) VC0631 PF01479 S4 domain VC0632 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VC0633 PF13609 Gram-negative porin VC0634 PF01272 Transcription elongation factor, GreA/GreB, C-term VC0634 PF03449 Transcription elongation factor, N-terminal VC0635 PF01985 CRS1 / YhbY (CRM) domain VC0636 PF01728 FtsJ-like methyltransferase VC0637 PF00004 ATPase family associated with various cellular activities (AAA) VC0637 PF01434 Peptidase family M41 VC0637 PF06480 FtsH Extracellular VC0638 PF00809 Pterin binding enzyme VC0639 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VC0639 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VC0639 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VC0639 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VC0640 PF03840 Preprotein translocase SecG subunit VC0641 PF02576 Uncharacterised BCR, YhbC family COG0779 VC0642 PF08529 NusA N-terminal domain VC0642 PF13184 NusA-like KH domain VC0642 PF14520 Helix-hairpin-helix domain VC0643 PF00009 Elongation factor Tu GTP binding domain VC0643 PF04760 Translation initiation factor IF-2, N-terminal region VC0643 PF08364 VC0643 VC0643 PF11987 Translation-initiation factor 2 VC0644 PF02033 Ribosome-binding factor A VC0645 PF01509 TruB family pseudouridylate synthase (N terminal domain) VC0645 PF09157 Pseudouridine synthase II TruB, C-terminal VC0645 PF16198 VC0645 VC0646 PF00312 Ribosomal protein S15 VC0647 PF00013 KH domain VC0647 PF00575 S1 RNA binding domain VC0647 PF01138 3' exoribonuclease family, domain 1 VC0647 PF03725 3' exoribonuclease family, domain 2 VC0647 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VC0649 PF01047 MarR family VC0650 PF01554 MatE VC0651 PF01136 VC0651 VC0652 PF01136 VC0652 VC0653 PF00563 EAL domain VC0653 PF00990 GGDEF domain VC0653 PF08448 PAS fold VC0653 PF13188 PAS domain VC0654 PF02036 SCP-2 sterol transfer family VC0655 PF13527 Acetyltransferase (GNAT) domain VC0656 PF03603 DNA polymerase III psi subunit VC0657 PF00583 Acetyltransferase (GNAT) family VC0658 PF00563 EAL domain VC0658 PF00990 GGDEF domain VC0659 PF00009 Elongation factor Tu GTP binding domain VC0659 PF03144 Elongation factor Tu domain 2 VC0659 PF16658 VC0659 VC0660 PF00270 DEAD/DEAH box helicase VC0660 PF00271 Helicase conserved C-terminal domain VC0661 PF05175 Methyltransferase small domain VC0662 PF05525 VC0662 VC0664 PF00152 tRNA synthetases class II (D, K and N) VC0664 PF01336 OB-fold nucleic acid binding domain VC0665 PF00158 Sigma-54 interaction domain VC0665 PF02954 Bacterial regulatory protein, Fis family VC0667 PF00248 Aldo/keto reductase family VC0668 PF02976 DNA mismatch repair enzyme MutH VC0671 PF00293 NUDIX domain VC0672 PF00391 PEP-utilising enzyme, mobile domain VC0672 PF01590 GAF domain VC0672 PF02896 PEP-utilising enzyme, TIM barrel domain VC0672 PF05524 PEP-utilising enzyme, N-terminal VC0673 PF01925 VC0673 VC0674 PF01790 VC0674 VC0675 PF00303 Thymidylate synthase VC0676 PF02690 VC0676 VC0677 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC0677 PF03466 LysR substrate binding domain VC0678 PF01022 Bacterial regulatory protein, arsR family VC0679 PF01649 Ribosomal protein S20 VC0680 PF03023 VC0680 VC0681 PF01687 Riboflavin kinase VC0681 PF06574 FAD synthetase VC0682 PF00133 tRNA synthetases class I (I, L, M and V) VC0682 PF06827 Zinc finger found in FPG and IleRS VC0682 PF08264 Anticodon-binding domain of tRNA VC0683 PF01252 VC0683 VC0684 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VC0685 PF02401 LytB protein VC0687 PF02554 VC0687 VC0687 PF13722 VC0687 VC0688 PF10973 VC0688 VC0689 PF00999 Sodium/hydrogen exchanger family VC0689 PF02254 TrkA-N domain VC0690 PF13580 SIS domain VC0691 PF03702 Uncharacterised protein family (UPF0075) VC0692 PF00933 Glycosyl hydrolase family 3 N terminal domain VC0693 PF00072 Response regulator receiver domain VC0693 PF04397 LytTr DNA-binding domain VC0694 PF06580 VC0694 VC0694 PF07694 5TMR of 5TMR-LYT VC0694 PF13492 GAF domain VC0695 PF00793 DAHP synthetase I family VC0696 PF01817 Chorismate mutase type II VC0696 PF02153 Prephenate dehydrogenase VC0697 PF07238 PilZ domain VC0698 PF00005 ABC transporter VC0698 PF12848 ABC transporter VC0700 PF01464 Transglycosylase SLT domain VC0700 PF14718 Soluble lytic murein transglycosylase L domain VC0701 PF01371 Trp repressor protein VC0702 PF01931 Protein of unknown function DUF84 VC0703 PF00563 EAL domain VC0703 PF00672 HAMP domain VC0703 PF00990 GGDEF domain VC0704 PF13416 Bacterial extracellular solute-binding protein VC0705 PF00800 Prephenate dehydratase VC0705 PF01817 Chorismate mutase type II VC0706 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VC0708 PF13525 Outer membrane lipoprotein VC0709 PF00849 RNA pseudouridylate synthase VC0709 PF01479 S4 domain VC0710 PF02578 Multi-copper polyphenol oxidoreductase laccase VC0711 PF00004 ATPase family associated with various cellular activities (AAA) VC0711 PF02861 Clp amino terminal domain VC0711 PF07724 AAA domain (Cdc48 subfamily) VC0711 PF10431 C-terminal, D2-small domain, of ClpB protein VC0714 PF08921 Domain of unknown function (DUF1904) VC0715 PF00881 Nitroreductase family VC0716 PF12838 4Fe-4S dicluster domain VC0717 PF01136 VC0717 VC0717 PF16325 VC0717 VC0718 PF04381 Putative exonuclease, RdgC VC0719 PF00072 Response regulator receiver domain VC0719 PF00486 Transcriptional regulatory protein, C terminal VC0720 PF00512 His Kinase A (phospho-acceptor) domain VC0720 PF00989 PAS fold VC0720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC0720 PF11808 VC0720 VC0721 PF12849 PBP superfamily domain VC0722 PF02541 Ppx/GppA phosphatase family VC0723 PF02503 Polyphosphate kinase middle domain VC0723 PF13089 Polyphosphate kinase N-terminal domain VC0723 PF13090 Polyphosphate kinase C-terminal domain VC0724 PF00528 Binding-protein-dependent transport system inner membrane component VC0725 PF00528 Binding-protein-dependent transport system inner membrane component VC0726 PF00005 ABC transporter VC0727 PF01895 PhoU domain VC0728 PF03976 Polyphosphate kinase 2 (PPK2) VC0730 PF03932 CutC family VC0731 PF00578 AhpC/TSA family VC0731 PF10417 C-terminal domain of 1-Cys peroxiredoxin VC0732 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC0732 PF03466 LysR substrate binding domain VC0734 PF01274 Malate synthase VC0736 PF00463 Isocitrate lyase family VC0737 PF00571 CBS domain VC0739 PF02547 Queuosine biosynthesis protein VC0741 PF01702 Queuine tRNA-ribosyltransferase VC0742 PF02699 Preprotein translocase subunit VC0743 PF02355 Protein export membrane protein VC0743 PF07549 SecD/SecF GG Motif VC0743 PF13721 SecD export protein N-terminal TM region VC0744 PF02355 Protein export membrane protein VC0744 PF07549 SecD/SecF GG Motif VC0745 PF00459 Inositol monophosphatase family VC0746 PF00588 SpoU rRNA Methylase family VC0747 PF02082 Transcriptional regulator VC0748 PF00266 Aminotransferase class-V VC0749 PF01592 NifU-like N terminal domain VC0750 PF01521 Iron-sulphur cluster biosynthesis VC0751 PF00226 DnaJ domain VC0751 PF07743 HSCB C-terminal oligomerisation domain VC0752 PF00012 Hsp70 protein VC0753 PF00111 2Fe-2S iron-sulfur cluster binding domain VC0754 PF04384 Iron-sulphur cluster assembly VC0755 PF00883 Cytosol aminopeptidase family, catalytic domain VC0755 PF12404 VC0755 VC0756 PF00334 Nucleoside diphosphate kinase VC0757 PF04055 Radical SAM superfamily VC0758 PF13413 Helix-turn-helix domain VC0758 PF13464 VC0758 VC0759 PF04551 GcpE protein VC0760 PF03129 Anticodon binding domain VC0760 PF13393 Histidyl-tRNA synthetase VC0761 PF09976 Tetratricopeptide repeat VC0762 PF13360 PQQ-like domain VC0763 PF01926 50S ribosome-binding GTPase VC0763 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VC0765 PF07191 zinc-ribbons VC0766 PF02601 VC0766 VC0766 PF13742 VC0766 VC0767 PF00478 IMP dehydrogenase / GMP reductase domain VC0767 PF00571 CBS domain VC0768 PF00117 Glutamine amidotransferase class-I VC0768 PF00958 GMP synthase C terminal domain VC0768 PF02540 NAD synthase VC0769 PF00182 Chitinase class I VC0769 PF02839 Carbohydrate binding domain VC0770 PF01184 VC0770 VC0771 PF00550 Phosphopantetheine attachment site VC0771 PF00857 Isochorismatase family VC0772 PF00501 AMP-binding enzyme VC0772 PF13193 AMP-binding enzyme C-terminal domain VC0773 PF00425 chorismate binding enzyme VC0774 PF13561 Enoyl-(Acyl carrier protein) reductase VC0775 PF00668 Condensation domain VC0776 PF01497 Periplasmic binding protein VC0777 PF01032 FecCD transport family VC0778 PF01032 FecCD transport family VC0779 PF00005 ABC transporter VC0780 PF01648 4'-phosphopantetheinyl transferase superfamily VC0781 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC0781 PF03466 LysR substrate binding domain VC0783 PF00753 Metallo-beta-lactamase superfamily VC0783 PF14863 Alkyl sulfatase dimerisation VC0783 PF14864 Alkyl sulfatase C-terminal VC0784 PF01235 VC0784 VC0786 PF01266 FAD dependent oxidoreductase VC0787 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC0787 PF03466 LysR substrate binding domain VC0788 PF08883 Dopa 4,5-dioxygenase family VC0790 PF00072 Response regulator receiver domain VC0790 PF12431 VC0790 VC0791 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC0791 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VC0791 PF17203 VC0791 VC0792 PF03977 VC0792 VC0794 PF04277 VC0794 VC0795 PF03390 VC0795 VC0796 PF08218 Citrate lyase ligase C-terminal domain VC0796 PF13673 Acetyltransferase (GNAT) domain VC0797 PF06857 VC0797 VC0798 PF03328 HpcH/HpaI aldolase/citrate lyase family VC0799 PF04223 Citrate lyase, alpha subunit (CitF) VC0800 PF03802 VC0800 VC0801 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase VC0802 PF10000 ACT domain VC0802 PF13840 ACT domain VC0803 PF00588 SpoU rRNA Methylase family VC0804 PF11953 Domain of unknown function (DUF3470) VC0804 PF13187 4Fe-4S dicluster domain VC0809 PF04434 VC0809 VC0812 PF00271 Helicase conserved C-terminal domain VC0812 PF04851 Type III restriction enzyme, res subunit VC0812 PF13091 PLD-like domain VC0813 PF13489 Methyltransferase domain VC0814 PF01381 Helix-turn-helix VC0815 PF07804 HipA-like C-terminal domain VC0815 PF07805 HipA-like N-terminal domain VC0817 PF00665 Integrase core domain VC0817 PF13565 VC0817 VC0819 PF00171 Aldehyde dehydrogenase family VC0820 PF00041 Fibronectin type III domain VC0820 PF10462 Peptidase M66 VC0820 PF12561 VC0820 VC0824 PF08534 Redoxin VC0825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC0826 PF00486 Transcriptional regulatory protein, C terminal VC0828 PF05946 Toxin-coregulated pilus subunit TcpA VC0830 PF10671 Toxin co-regulated pilus biosynthesis protein Q VC0835 PF00437 Type II/IV secretion system protein VC0836 PF00482 Type II secretion system (T2SS), protein F VC0837 PF06340 Vibrio cholerae toxin co-regulated pilus biosynthesis protein F VC0838 PF00165 Bacterial regulatory helix-turn-helix proteins, AraC family VC0839 PF01478 Type IV leader peptidase family VC0839 PF06750 VC0839 VC0840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC0840 PF00672 HAMP domain VC0840 PF02743 Cache domain VC0841 PF13531 Bacterial extracellular solute-binding protein VC0842 PF06271 VC0842 VC0843 PF01551 Peptidase family M23 VC0844 PF13505 Outer membrane protein beta-barrel domain VC0845 PF13322 VC0845 VC0845 PF13402 Peptidase M60-like family VC0847 PF00589 Phage integrase family VC0847 PF13356 Domain of unknown function (DUF4102) VC0848 PF01668 SmpB protein VC0849 PF03364 Polyketide cyclase / dehydrase and lipid transport VC0850 PF03658 RnfH family Ubiquitin VC0851 PF04355 SmpA / OmlA family VC0852 PF02463 RecF/RecN/SMC N terminal domain VC0853 PF01513 ATP-NAD kinase VC0854 PF01025 GrpE VC0855 PF00012 Hsp70 protein VC0856 PF00226 DnaJ domain VC0856 PF00684 DnaJ central domain VC0856 PF01556 DnaJ C terminal domain VC0857 PF13544 VC0857 VC0857 PF16732 VC0857 VC0858 PF12019 Type II transport protein GspH VC0858 PF13633 Prokaryotic N-terminal methylation site VC0861 PF13633 Prokaryotic N-terminal methylation site VC0863 PF03806 VC0863 VC0864 PF14437 VC0864 VC0866 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC0866 PF01464 Transglycosylase SLT domain VC0869 PF02769 AIR synthase related protein, C-terminal domain VC0869 PF13507 CobB/CobQ-like glutamine amidotransferase domain VC0870 PF01797 Transposase IS200 like VC0871 PF14056 VC0871 VC0872 PF06786 VC0872 VC0873 PF04391 VC0873 VC0875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VC0875 PF03129 Anticodon binding domain VC0875 PF04073 Aminoacyl-tRNA editing domain VC0876 PF01980 Uncharacterised protein family UPF0066 VC0878 PF01197 Ribosomal protein L31 VC0879 PF00444 Ribosomal protein L36 VC0880 PF03806 VC0880 VC0881 PF02639 VC0881 VC0884 PF13302 Acetyltransferase (GNAT) domain VC0885 PF11743 VC0885 VC0886 PF12069 VC0886 VC0887 PF04287 tRNA pseudouridine synthase C VC0888 PF00849 RNA pseudouridylate synthase VC0889 PF02779 Transketolase, pyrimidine binding domain VC0889 PF02780 Transketolase, C-terminal domain VC0889 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VC0890 PF00348 Polyprenyl synthetase VC0891 PF02609 Exonuclease VII small subunit VC0892 PF01618 VC0892 VC0893 PF00691 OmpA family VC0893 PF13677 VC0893 VC0894 PF02568 Thiamine biosynthesis protein (ThiI) VC0894 PF02926 THUMP domain VC0896 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC0896 PF03466 LysR substrate binding domain VC0897 PF04241 VC0897 VC0898 PF01367 5'-3' exonuclease, C-terminal SAM fold VC0898 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VC0899 PF03641 Possible lysine decarboxylase VC0899 PF11892 Domain of unknown function (DUF3412) VC0899 PF14793 Domain of unknown function (DUF4478) VC0900 PF00990 GGDEF domain VC0901 PF13424 Tetratricopeptide repeat VC0902 PF14489 QueF-like protein VC0902 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VC0903 PF07348 Syd protein (SUKH-2) VC0904 PF10071 VC0904 VC0905 PF03180 NLPA lipoprotein VC0906 PF00528 Binding-protein-dependent transport system inner membrane component VC0907 PF00005 ABC transporter VC0907 PF09383 NIL domain VC0908 PF13242 HAD-hyrolase-like VC0909 PF00356 Bacterial regulatory proteins, lacI family VC0909 PF13377 Periplasmic binding protein-like domain VC0910 PF00367 phosphotransferase system, EIIB VC0910 PF02378 Phosphotransferase system, EIIC VC0911 PF00128 Alpha amylase, catalytic domain VC0913 PF16576 VC0913 VC0914 PF00873 AcrB/AcrD/AcrF family VC0916 PF01451 Low molecular weight phosphotyrosine protein phosphatase VC0917 PF02350 UDP-N-acetylglucosamine 2-epimerase VC0918 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VC0918 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VC0918 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VC0919 PF00132 Bacterial transferase hexapeptide (six repeats) VC0920 PF00534 Glycosyl transferases group 1 VC0920 PF13439 Glycosyltransferase Family 4 VC0921 PF13440 VC0921 VC0921 PF14667 Polysaccharide biosynthesis C-terminal domain VC0923 PF00132 Bacterial transferase hexapeptide (six repeats) VC0924 PF00501 AMP-binding enzyme VC0925 PF00534 Glycosyl transferases group 1 VC0927 PF03808 VC0927 VC0929 PF12708 Pectate lyase superfamily protein VC0930 PF16458 VC0930 VC0931 PF04932 VC0931 VC0934 PF02397 VC0934 VC0934 PF13727 CoA-binding domain VC0935 PF10082 VC0935 VC0936 PF02563 Polysaccharide biosynthesis/export protein VC0936 PF10531 SLBB domain VC0937 PF02706 Chain length determinant protein VC0937 PF13614 AAA domain VC0937 PF13807 VC0937 VC0939 PF04892 VC0939 VC0940 PF02588 VC0940 VC0941 PF00464 Serine hydroxymethyltransferase VC0943 PF04055 Radical SAM superfamily VC0943 PF16881 VC0943 VC0944 PF03099 Biotin/lipoate A/B protein ligase family VC0945 PF04359 Protein of unknown function (DUF493) VC0947 PF00768 D-alanyl-D-alanine carboxypeptidase VC0947 PF07943 Penicillin-binding protein 5, C-terminal domain VC0948 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel VC0948 PF05036 Sporulation related domain VC0949 PF01098 VC0949 VC0950 PF00905 Penicillin binding protein transpeptidase domain VC0950 PF03717 Penicillin-binding Protein dimerisation domain VC0951 PF02590 Predicted SPOUT methyltransferase VC0952 PF02410 Oligomerisation domain VC0953 PF06144 DNA polymerase III, delta subunit VC0953 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VC0954 PF04390 Lipopolysaccharide-assembly VC0956 PF00133 tRNA synthetases class I (I, L, M and V) VC0956 PF08264 Anticodon-binding domain of tRNA VC0956 PF13603 Leucyl-tRNA synthetase, Domain 2 VC0957 PF07295 VC0957 VC0958 PF00795 Carbon-nitrogen hydrolase VC0959 PF00571 CBS domain VC0959 PF03471 Transporter associated domain VC0960 PF02130 Uncharacterized protein family UPF0054 VC0961 PF02562 PhoH-like protein VC0962 PF00919 Uncharacterized protein family UPF0004 VC0962 PF01938 TRAM domain VC0962 PF04055 Radical SAM superfamily VC0963 PF01494 FAD binding domain VC0964 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VC0965 PF00391 PEP-utilising enzyme, mobile domain VC0965 PF02896 PEP-utilising enzyme, TIM barrel domain VC0965 PF05524 PEP-utilising enzyme, N-terminal VC0966 PF00381 PTS HPr component phosphorylation site VC0968 PF00291 Pyridoxal-phosphate dependent enzyme VC0969 PF07264 Etoposide-induced protein 2 VC0970 PF04354 ZipA, C-terminal FtsZ-binding domain VC0971 PF00533 BRCA1 C Terminus (BRCT) domain VC0971 PF01653 NAD-dependent DNA ligase adenylation domain VC0971 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VC0971 PF03120 NAD-dependent DNA ligase OB-fold domain VC0971 PF12826 Helix-hairpin-helix motif VC0971 PF14520 Helix-hairpin-helix domain VC0972 PF13609 Gram-negative porin VC0974 PF13411 MerR HTH family regulatory protein VC0975 PF01957 NfeD-like C-terminal, partner-binding VC0976 PF01145 SPFH domain / Band 7 family VC0976 PF16200 VC0976 VC0977 PF00085 Thioredoxin VC0977 PF14559 Tetratricopeptide repeat VC0977 PF14561 Tetratricopeptide repeat VC0979 PF00106 short chain dehydrogenase VC0980 PF01370 NAD dependent epimerase/dehydratase family VC0980 PF08338 Domain of unknown function (DUF1731) VC0981 PF12850 Calcineurin-like phosphoesterase superfamily domain VC0982 PF10262 Rdx family VC0984 PF00486 Transcriptional regulatory protein, C terminal VC0985 PF00183 Hsp90 protein VC0985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC0986 PF00406 Adenylate kinase VC0986 PF05191 Adenylate kinase, active site lid VC0987 PF00762 Ferrochelatase VC0988 PF00854 POT family VC0990 PF02357 Transcription termination factor nusG VC0991 PF00733 Asparagine synthase VC0991 PF13537 Glutamine amidotransferase domain VC0992 PF00999 Sodium/hydrogen exchanger family VC0992 PF02254 TrkA-N domain VC0993 PF00480 ROK family VC0994 PF01979 Amidohydrolase family VC0995 PF00367 phosphotransferase system, EIIB VC0995 PF02378 Phosphotransferase system, EIIC VC0997 PF00749 tRNA synthetases class I (E and Q), catalytic domain VC0997 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VC0999 PF01416 tRNA pseudouridine synthase VC1000 PF01039 Carboxyl transferase domain VC1001 PF02875 Mur ligase family, glutamate ligase domain VC1001 PF08245 Mur ligase middle domain VC1002 PF05036 Sporulation related domain VC1003 PF02674 VC1003 VC1004 PF13522 Glutamine amidotransferase domain VC1005 PF03553 VC1005 VC1005 PF13726 VC1005 VC1006 PF00929 Exonuclease VC1008 PF00691 OmpA family VC1009 PF10952 VC1009 VC1010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VC1011 PF00633 Helix-hairpin-helix motif VC1011 PF00730 HhH-GPD superfamily base excision DNA repair protein VC1011 PF10576 Iron-sulfur binding domain of endonuclease III VC1012 PF02508 VC1012 VC1013 PF04205 FMN-binding domain VC1014 PF03116 VC1014 VC1015 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VC1015 PF10531 SLBB domain VC1015 PF12838 4Fe-4S dicluster domain VC1015 PF13375 RnfC Barrel sandwich hybrid domain VC1016 PF04060 Putative Fe-S cluster VC1016 PF14697 4Fe-4S dicluster domain VC1017 PF02508 VC1017 VC1021 PF00072 Response regulator receiver domain VC1021 PF00158 Sigma-54 interaction domain VC1021 PF02954 Bacterial regulatory protein, Fis family VC1022 PF01627 Hpt domain VC1023 PF01933 Uncharacterised protein family UPF0052 VC1024 PF04055 Radical SAM superfamily VC1024 PF06463 Molybdenum Cofactor Synthesis C VC1024 PF13353 4Fe-4S single cluster domain VC1025 PF00994 Probable molybdopterin binding domain VC1026 PF01967 MoaC family VC1027 PF02597 ThiS family VC1028 PF02391 MoaE protein VC1029 PF00990 GGDEF domain VC1031 PF00571 CBS domain VC1033 PF00122 E1-E2 ATPase VC1033 PF00403 Heavy-metal-associated domain VC1033 PF00702 haloacid dehalogenase-like hydrolase VC1034 PF01048 Phosphorylase superfamily VC1036 PF01588 Putative tRNA binding domain VC1036 PF09334 tRNA synthetases class I (M) VC1037 PF10609 ParA/MinD ATPase like VC1038 PF00485 Phosphoribulokinase / Uridine kinase family VC1039 PF05170 VC1039 VC1040 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VC1040 PF12557 Cob(I)alamin adenosyltransferase N terminal VC1041 PF01451 Low molecular weight phosphotyrosine protein phosphatase VC1042 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VC1043 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VC1044 PF11859 VC1044 VC1045 PF04542 Sigma-70 region 2 VC1045 PF08281 Sigma-70, region 4 VC1046 PF00108 Thiolase, N-terminal domain VC1046 PF02803 Thiolase, C-terminal domain VC1047 PF00378 Enoyl-CoA hydratase/isomerase family VC1047 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VC1047 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VC1048 PF00881 Nitroreductase family VC1049 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC1049 PF03466 LysR substrate binding domain VC1050 PF00072 Response regulator receiver domain VC1052 PF04304 VC1052 VC1053 PF00156 Phosphoribosyl transferase domain VC1054 PF12168 VC1054 VC1054 PF12169 DNA polymerase III subunits gamma and tau domain III VC1054 PF12170 DNA polymerase III tau subunit V interacting with alpha VC1054 PF13177 DNA polymerase III, delta subunit VC1055 PF02575 YbaB/EbfC DNA-binding family VC1056 PF02132 RecR protein VC1056 PF13662 Toprim domain VC1057 PF03692 VC1057 VC1058 PF03692 VC1058 VC1059 PF00106 short chain dehydrogenase VC1060 PF01343 Peptidase family S49 VC1060 PF08496 VC1060 VC1061 PF00291 Pyridoxal-phosphate dependent enzyme VC1062 PF01037 AsnC family VC1062 PF13412 Winged helix-turn-helix DNA-binding VC1063 PF13622 Thioesterase-like superfamily VC1064 PF09619 Type III secretion system lipoprotein chaperone (YscW) VC1065 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VC1067 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC1067 PF00990 GGDEF domain VC1068 PF01022 Bacterial regulatory protein, arsR family VC1069 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC1069 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VC1070 PF00782 Dual specificity phosphatase, catalytic domain VC1071 PF07690 Major Facilitator Superfamily VC1073 PF00704 Glycosyl hydrolases family 18 VC1073 PF06483 VC1073 VC1073 PF14600 Cellulose-binding domain VC1074 PF02517 CAAX protease self-immunity VC1075 PF01161 Phosphatidylethanolamine-binding protein VC1076 PF12833 Helix-turn-helix domain VC1079 PF01300 Telomere recombination VC1079 PF03481 Putative GTP-binding controlling metal-binding VC1080 PF01627 Hpt domain VC1081 PF00072 Response regulator receiver domain VC1081 PF08668 HDOD domain VC1082 PF00072 Response regulator receiver domain VC1083 PF04509 CheC-like family VC1084 PF00512 His Kinase A (phospho-acceptor) domain VC1084 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1084 PF08448 PAS fold VC1085 PF00512 His Kinase A (phospho-acceptor) domain VC1085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1086 PF00072 Response regulator receiver domain VC1086 PF00563 EAL domain VC1087 PF00072 Response regulator receiver domain VC1087 PF13487 HD domain VC1088 PF00672 HAMP domain VC1088 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1089 PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein VC1091 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VC1092 PF00528 Binding-protein-dependent transport system inner membrane component VC1093 PF00528 Binding-protein-dependent transport system inner membrane component VC1093 PF12911 VC1093 VC1094 PF00005 ABC transporter VC1094 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC1095 PF00005 ABC transporter VC1095 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC1096 PF13409 Glutathione S-transferase, N-terminal domain VC1096 PF13410 Glutathione S-transferase, C-terminal domain VC1097 PF01515 Phosphate acetyl/butaryl transferase VC1097 PF07085 DRTGG domain VC1097 PF13500 AAA domain VC1098 PF00871 Acetokinase family VC1099 PF04217 VC1099 VC1100 PF09905 Uncharacterized conserved protein (DUF2132) VC1101 PF04392 ABC transporter substrate binding protein VC1102 PF02653 VC1102 VC1103 PF00005 ABC transporter VC1104 PF00990 GGDEF domain VC1105 PF01207 Dihydrouridine synthase (Dus) VC1106 PF02810 SEC-C motif VC1106 PF03695 Uncharacterised protein family (UPF0149) VC1107 PF03548 Outer membrane lipoprotein carrier protein LolA VC1108 PF00004 ATPase family associated with various cellular activities (AAA) VC1108 PF12002 MgsA AAA+ ATPase C terminal VC1108 PF16193 VC1108 VC1110 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VC1110 PF02403 Seryl-tRNA synthetase N-terminal domain VC1111 PF00202 Aminotransferase class-III VC1112 PF04055 Radical SAM superfamily VC1112 PF06968 Biotin and Thiamin Synthesis associated domain VC1113 PF00155 Aminotransferase class I and II VC1114 PF08241 Methyltransferase domain VC1115 PF13500 AAA domain VC1117 PF01435 Peptidase family M48 VC1118 PF12680 SnoaL-like domain VC1119 PF00106 short chain dehydrogenase VC1120 PF01593 Flavin containing amine oxidoreductase VC1121 PF07103 VC1121 VC1122 PF02353 Mycolic acid cyclopropane synthetase VC1123 PF11086 VC1123 VC1124 PF16036 VC1124 VC1125 PF12915 VC1125 VC1126 PF00206 Lyase VC1126 PF08328 Adenylosuccinate lyase C-terminal VC1127 PF04356 Protein of unknown function (DUF489) VC1128 PF03054 tRNA methyl transferase VC1129 PF00294 pfkB family carbohydrate kinase VC1130 PF00816 H-NS histone family VC1131 PF03553 VC1131 VC1132 PF01634 ATP phosphoribosyltransferase VC1132 PF08029 HisG, C-terminal domain VC1133 PF00815 Histidinol dehydrogenase VC1134 PF00155 Aminotransferase class I and II VC1135 PF00475 Imidazoleglycerol-phosphate dehydratase VC1135 PF08645 Polynucleotide kinase 3 phosphatase VC1136 PF00117 Glutamine amidotransferase class-I VC1137 PF00977 Histidine biosynthesis protein VC1138 PF00977 Histidine biosynthesis protein VC1139 PF01502 Phosphoribosyl-AMP cyclohydrolase VC1139 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VC1140 PF00849 RNA pseudouridylate synthase VC1141 PF03971 Monomeric isocitrate dehydrogenase VC1142 PF00313 'Cold-shock' DNA-binding domain VC1143 PF02617 ATP-dependent Clp protease adaptor protein ClpS VC1144 PF00004 ATPase family associated with various cellular activities (AAA) VC1144 PF02861 Clp amino terminal domain VC1144 PF07724 AAA domain (Cdc48 subfamily) VC1144 PF10431 C-terminal, D2-small domain, of ClpB protein VC1145 PF02080 TrkA-C domain VC1145 PF06826 VC1145 VC1146 PF00462 Glutaredoxin VC1147 PF00465 Iron-containing alcohol dehydrogenase VC1148 PF01380 SIS domain VC1148 PF01418 Helix-turn-helix domain, rpiR family VC1149 PF00282 Pyridoxal-dependent decarboxylase conserved domain VC1151 PF03956 VC1151 VC1152 PF08668 HDOD domain VC1153 PF04993 TfoX N-terminal domain VC1153 PF04994 TfoX C-terminal domain VC1155 PF00072 Response regulator receiver domain VC1158 PF06097 VC1158 VC1159 PF00266 Aminotransferase class-V VC1160 PF14397 VC1160 VC1161 PF14400 VC1161 VC1161 PF14402 VC1161 VC1162 PF05618 Putative ATP-dependant zinc protease VC1163 PF08003 Protein of unknown function (DUF1698) VC1164 PF13649 Methyltransferase domain VC1165 PF01904 Protein of unknown function DUF72 VC1166 PF00152 tRNA synthetases class II (D, K and N) VC1166 PF01336 OB-fold nucleic acid binding domain VC1166 PF02938 GAD domain VC1167 PF00265 Thymidine kinase VC1168 PF00375 Sodium:dicarboxylate symporter family VC1169 PF00290 Tryptophan synthase alpha chain VC1170 PF00291 Pyridoxal-phosphate dependent enzyme VC1171 PF00218 Indole-3-glycerol phosphate synthase VC1171 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VC1172 PF00591 Glycosyl transferase family, a/b domain VC1172 PF02885 Glycosyl transferase family, helical bundle domain VC1173 PF00117 Glutamine amidotransferase class-I VC1174 PF00425 chorismate binding enzyme VC1174 PF04715 Anthranilate synthase component I, N terminal region VC1177 PF02811 PHP domain VC1178 PF01300 Telomere recombination VC1179 PF00849 RNA pseudouridylate synthase VC1179 PF01479 S4 domain VC1180 PF00005 ABC transporter VC1180 PF00664 ABC transporter transmembrane region VC1181 PF00005 ABC transporter VC1181 PF00664 ABC transporter transmembrane region VC1182 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC1183 PF10014 2OG-Fe dioxygenase VC1184 PF00266 Aminotransferase class-V VC1185 PF00990 GGDEF domain VC1186 PF02698 DUF218 domain VC1187 PF11872 VC1187 VC1188 PF00390 Malic enzyme, N-terminal domain VC1188 PF03949 Malic enzyme, NAD binding domain VC1190 PF01259 SAICAR synthetase VC1194 PF08238 Sel1 repeat VC1195 PF00691 OmpA family VC1195 PF13488 VC1195 VC1196 PF10979 VC1196 VC1197 PF11813 VC1197 VC1198 PF01565 FAD binding domain VC1198 PF02913 FAD linked oxidases, C-terminal domain VC1198 PF13183 4Fe-4S dicluster domain VC1199 PF04191 Phospholipid methyltransferase VC1200 PF00089 Trypsin VC1201 PF12119 VC1201 VC1202 PF00221 Aromatic amino acid lyase VC1203 PF01175 Urocanase VC1204 PF00491 Arginase family VC1205 PF01979 Amidohydrolase family VC1206 PF00392 Bacterial regulatory proteins, gntR family VC1206 PF07702 UTRA domain VC1207 PF11383 VC1207 VC1208 PF04269 Protein of unknown function, DUF440 VC1209 PF01132 Elongation factor P (EF-P) OB domain VC1209 PF08207 Elongation factor P (EF-P) KOW-like domain VC1209 PF09285 Elongation factor P, C-terminal VC1210 PF01909 Nucleotidyltransferase domain VC1211 PF00563 EAL domain VC1211 PF02378 Phosphotransferase system, EIIC VC1212 PF00136 DNA polymerase family B VC1212 PF03104 DNA polymerase family B, exonuclease domain VC1213 PF00072 Response regulator receiver domain VC1213 PF00196 Bacterial regulatory proteins, luxR family VC1214 PF01541 GIY-YIG catalytic domain VC1214 PF02151 UvrB/uvrC motif VC1214 PF08459 UvrC Helix-hairpin-helix N-terminal VC1214 PF14520 Helix-hairpin-helix domain VC1215 PF01066 CDP-alcohol phosphatidyltransferase VC1216 PF00990 GGDEF domain VC1216 PF01814 Hemerythrin HHE cation binding domain VC1217 PF00583 Acetyltransferase (GNAT) family VC1219 PF01409 tRNA synthetases class II core domain (F) VC1219 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VC1220 PF01588 Putative tRNA binding domain VC1220 PF03147 Ferredoxin-fold anticodon binding domain VC1220 PF03483 B3/4 domain VC1220 PF03484 tRNA synthetase B5 domain VC1222 PF00216 Bacterial DNA-binding protein VC1224 PF04607 Region found in RelA / SpoT proteins VC1226 PF05724 Thiopurine S-methyltransferase (TPMT) VC1228 PF02222 ATP-grasp domain VC1229 PF03547 VC1229 VC1231 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VC1231 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VC1232 PF04172 VC1232 VC1233 PF03788 VC1233 VC1234 PF00929 Exonuclease VC1234 PF08411 Exonuclease C-terminal VC1235 PF00375 Sodium:dicarboxylate symporter family VC1236 PF01641 SelR domain VC1237 PF02277 Phosphoribosyltransferase VC1238 PF02654 VC1238 VC1239 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VC1240 PF00300 Histidine phosphatase superfamily (branch 1) VC1242 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VC1244 PF01032 FecCD transport family VC1245 PF00005 ABC transporter VC1246 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VC1247 PF11042 VC1247 VC1248 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1248 PF00672 HAMP domain VC1248 PF17200 VC1248 VC1249 PF13740 ACT domain VC1250 PF13084 VC1250 VC1252 PF00994 Probable molybdopterin binding domain VC1254 PF00111 2Fe-2S iron-sulfur cluster binding domain VC1255 PF00268 Ribonucleotide reductase, small chain VC1256 PF00317 Ribonucleotide reductase, all-alpha domain VC1256 PF02867 Ribonucleotide reductase, barrel domain VC1256 PF03477 ATP cone domain VC1257 PF13489 Methyltransferase domain VC1258 PF00521 DNA gyrase/topoisomerase IV, subunit A VC1258 PF03989 DNA gyrase C-terminal domain, beta-propeller VC1259 PF00581 Rhodanese-like domain VC1260 PF12833 Helix-turn-helix domain VC1261 PF07690 Major Facilitator Superfamily VC1263 PF00925 GTP cyclohydrolase II VC1264 PF09375 Imelysin VC1265 PF06537 VC1265 VC1266 PF09375 Imelysin VC1267 PF07433 VC1267 VC1268 PF01471 Putative peptidoglycan binding domain VC1268 PF03734 L,D-transpeptidase catalytic domain VC1269 PF05951 VC1269 VC1270 PF00753 Metallo-beta-lactamase superfamily VC1271 PF11201 VC1271 VC1273 PF03480 Bacterial extracellular solute-binding protein, family 7 VC1274 PF04290 VC1274 VC1275 PF06808 VC1275 VC1276 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1276 PF07730 Histidine kinase VC1276 PF17200 VC1276 VC1277 PF00072 Response regulator receiver domain VC1277 PF00196 Bacterial regulatory proteins, luxR family VC1278 PF01047 MarR family VC1279 PF02028 BCCT family transporter VC1280 PF01522 Polysaccharide deacetylase VC1280 PF02839 Carbohydrate binding domain VC1281 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VC1282 PF02378 Phosphotransferase system, EIIC VC1283 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VC1284 PF02056 Family 4 glycosyl hydrolase VC1284 PF11975 Family 4 glycosyl hydrolase C-terminal domain VC1285 PF04794 YdjC-like protein VC1286 PF00356 Bacterial regulatory proteins, lacI family VC1286 PF13377 Periplasmic binding protein-like domain VC1287 PF13632 Glycosyl transferase family group 2 VC1288 PF04349 Periplasmic glucan biosynthesis protein, MdoG VC1289 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1289 PF00672 HAMP domain VC1289 PF02743 Cache domain VC1290 PF00929 Exonuclease VC1291 PF00027 Cyclic nucleotide-binding domain VC1291 PF00571 CBS domain VC1291 PF03445 VC1291 VC1291 PF10335 VC1291 VC1293 PF00155 Aminotransferase class I and II VC1295 PF01966 HD domain VC1296 PF08543 Phosphomethylpyrimidine kinase VC1297 PF00152 tRNA synthetases class II (D, K and N) VC1297 PF01336 OB-fold nucleic acid binding domain VC1298 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1298 PF00672 HAMP domain VC1299 PF01242 6-pyruvoyl tetrahydropterin synthase VC1300 PF03313 VC1300 VC1300 PF03315 Serine dehydratase beta chain VC1301 PF01490 VC1301 VC1302 PF00293 NUDIX domain VC1303 PF00425 chorismate binding enzyme VC1303 PF04715 Anthranilate synthase component I, N terminal region VC1304 PF05681 VC1304 VC1304 PF05683 Fumarase C-terminus VC1306 PF04317 VC1306 VC1308 PF00158 Sigma-54 interaction domain VC1308 PF00989 PAS fold VC1309 PF13302 Acetyltransferase (GNAT) domain VC1310 PF11163 VC1310 VC1311 PF00892 EamA-like transporter family VC1312 PF00842 Alanine racemase, C-terminal domain VC1312 PF01168 Alanine racemase, N-terminal domain VC1313 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1313 PF00672 HAMP domain VC1313 PF12729 VC1313 VC1314 PF00939 Sodium:sulfate symporter transmembrane region VC1315 PF00027 Cyclic nucleotide-binding domain VC1315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1316 PF00072 Response regulator receiver domain VC1317 PF04393 VC1317 VC1318 PF06629 VC1318 VC1319 PF00512 His Kinase A (phospho-acceptor) domain VC1319 PF00672 HAMP domain VC1319 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1320 PF00072 Response regulator receiver domain VC1320 PF00486 Transcriptional regulatory protein, C terminal VC1321 PF00912 Transglycosylase VC1322 PF04400 VC1322 VC1323 PF02579 Dinitrogenase iron-molybdenum cofactor VC1325 PF13407 Periplasmic binding protein domain VC1327 PF00005 ABC transporter VC1328 PF02653 VC1328 VC1329 PF13505 Outer membrane protein beta-barrel domain VC1330 PF07313 Protein of unknown function (DUF1460) VC1332 PF01970 VC1332 VC1333 PF07331 VC1333 VC1334 PF03401 Tripartite tricarboxylate transporter family receptor VC1335 PF00392 Bacterial regulatory proteins, gntR family VC1335 PF07729 FCD domain VC1336 PF13714 Phosphoenolpyruvate phosphomutase VC1337 PF00285 Citrate synthase VC1338 PF00330 Aconitase family (aconitate hydratase) VC1338 PF00694 Aconitase C-terminal domain VC1339 PF04303 PrpF protein VC1340 PF00501 AMP-binding enzyme VC1340 PF13193 AMP-binding enzyme C-terminal domain VC1340 PF16177 VC1340 VC1341 PF00583 Acetyltransferase (GNAT) family VC1342 PF00293 NUDIX domain VC1343 PF01546 Peptidase family M20/M25/M40 VC1343 PF07687 Peptidase dimerisation domain VC1344 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VC1344 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal VC1345 PF04209 homogentisate 1,2-dioxygenase VC1346 PF01557 Fumarylacetoacetate (FAA) hydrolase family VC1347 PF02798 Glutathione S-transferase, N-terminal domain VC1347 PF14497 Glutathione S-transferase, C-terminal domain VC1348 PF00072 Response regulator receiver domain VC1348 PF13487 HD domain VC1349 PF00072 Response regulator receiver domain VC1349 PF00512 His Kinase A (phospho-acceptor) domain VC1349 PF01627 Hpt domain VC1349 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1349 PF08448 PAS fold VC1350 PF08534 Redoxin VC1353 PF00990 GGDEF domain VC1353 PF07494 Two component regulator propeller VC1353 PF07495 Y_Y_Y domain VC1354 PF10672 S-adenosylmethionine-dependent methyltransferase VC1355 PF00708 Acylphosphatase VC1356 PF04358 DsrC like protein VC1358 PF01027 Inhibitor of apoptosis-promoting Bax1 VC1359 PF00005 ABC transporter VC1360 PF00528 Binding-protein-dependent transport system inner membrane component VC1361 PF00528 Binding-protein-dependent transport system inner membrane component VC1362 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC1363 PF10414 Sirohaem synthase dimerisation region VC1363 PF13241 Putative NAD(P)-binding VC1364 PF08282 haloacid dehalogenase-like hydrolase VC1365 PF04055 Radical SAM superfamily VC1365 PF13394 4Fe-4S single cluster domain VC1366 PF06508 Queuosine biosynthesis protein QueC VC1367 PF00990 GGDEF domain VC1367 PF13181 Tetratricopeptide repeat VC1367 PF13424 Tetratricopeptide repeat VC1369 PF09084 NMT1/THI5 like VC1370 PF00990 GGDEF domain VC1372 PF00990 GGDEF domain VC1373 PF00012 Hsp70 protein VC1373 PF12531 VC1373 VC1374 PF00012 Hsp70 protein VC1375 PF10816 VC1375 VC1376 PF00990 GGDEF domain VC1376 PF03924 CHASE domain VC1377 PF00929 Exonuclease VC1379 PF05099 Tellurite resistance protein TerB VC1382 PF00270 DEAD/DEAH box helicase VC1382 PF00271 Helicase conserved C-terminal domain VC1382 PF04408 Helicase associated domain (HA2) VC1382 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VC1382 PF11898 VC1382 VC1384 PF13505 Outer membrane protein beta-barrel domain VC1386 PF00012 Hsp70 protein VC1388 PF03099 Biotin/lipoate A/B protein ligase family VC1388 PF10437 Bacterial lipoate protein ligase C-terminus VC1389 PF10013 VC1389 VC1390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC1390 PF03466 LysR substrate binding domain VC1391 PF07690 Major Facilitator Superfamily VC1392 PF00875 DNA photolyase VC1392 PF03441 FAD binding domain of DNA photolyase VC1393 PF00893 Small Multidrug Resistance protein VC1394 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1397 PF01584 CheW-like domain VC1397 PF01627 Hpt domain VC1397 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1397 PF02895 Signal transducing histidine kinase, homodimeric domain VC1398 PF00072 Response regulator receiver domain VC1399 PF01739 CheR methyltransferase, SAM binding domain VC1399 PF03705 CheR methyltransferase, all-alpha domain VC1401 PF00072 Response regulator receiver domain VC1401 PF01339 CheB methylesterase VC1402 PF01584 CheW-like domain VC1403 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1405 PF00672 HAMP domain VC1406 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1406 PF08447 PAS fold VC1406 PF13426 PAS domain VC1407 PF00270 DEAD/DEAH box helicase VC1407 PF00271 Helicase conserved C-terminal domain VC1408 PF00440 Bacterial regulatory proteins, tetR family VC1408 PF14246 AefR-like transcriptional repressor, C-terminal region VC1409 PF02321 Outer membrane efflux protein VC1410 PF13437 HlyD family secretion protein VC1410 PF13533 Biotin-lipoyl like VC1411 PF07690 Major Facilitator Superfamily VC1413 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1413 PF00672 HAMP domain VC1414 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VC1415 PF05638 Protein of unknown function (DUF796) VC1416 PF05954 Phage late control gene D protein (GPD) VC1416 PF16671 VC1416 VC1417 PF13503 VC1417 VC1418 PF01764 Lipase (class 3) VC1420 PF11153 VC1420 VC1421 PF01810 VC1421 VC1422 PF01235 VC1422 VC1424 PF13416 Bacterial extracellular solute-binding protein VC1425 PF13416 Bacterial extracellular solute-binding protein VC1426 PF00528 Binding-protein-dependent transport system inner membrane component VC1427 PF00528 Binding-protein-dependent transport system inner membrane component VC1428 PF00005 ABC transporter VC1428 PF08402 TOBE domain VC1430 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VC1431 PF11205 VC1431 VC1432 PF01171 PP-loop family VC1433 PF00582 Universal stress protein family VC1434 PF00027 Cyclic nucleotide-binding domain VC1434 PF13545 Crp-like helix-turn-helix domain VC1435 PF13386 VC1435 VC1436 PF03597 VC1436 VC1437 PF00122 E1-E2 ATPase VC1437 PF00403 Heavy-metal-associated domain VC1437 PF00702 haloacid dehalogenase-like hydrolase VC1437 PF12156 VC1437 VC1438 PF05751 VC1438 VC1439 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VC1439 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VC1440 PF05545 VC1440 VC1441 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO VC1442 PF00115 Cytochrome C and Quinol oxidase polypeptide I VC1444 PF08495 VC1444 VC1444 PF10442 VC1444 VC1445 PF00072 Response regulator receiver domain VC1445 PF00512 His Kinase A (phospho-acceptor) domain VC1445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1446 PF00005 ABC transporter VC1446 PF00664 ABC transporter transmembrane region VC1446 PF03412 Peptidase C39 family VC1447 PF13437 HlyD family secretion protein VC1448 PF00005 ABC transporter VC1448 PF00664 ABC transporter transmembrane region VC1448 PF03412 Peptidase C39 family VC1450 PF02794 VC1450 VC1451 PF07634 VC1451 VC1451 PF11647 C-terminal region of Pasteurella multocida toxin residues 569-1285 VC1451 PF11713 Peptidase C80 family VC1451 PF12146 Putative lysophospholipase VC1451 PF16671 VC1451 VC1453 PF07459 VC1453 VC1454 PF02486 VC1454 VC1455 PF01381 Helix-turn-helix VC1456 PF01376 Heat-labile enterotoxin beta chain VC1457 PF01375 Heat-labile enterotoxin alpha chain VC1458 PF05707 Zonular occludens toxin (Zot) VC1459 PF10734 VC1459 VC1460 PF16710 VC1460 VC1462 PF07459 VC1462 VC1463 PF02486 VC1463 VC1464 PF01381 Helix-turn-helix VC1465 PF12375 VC1465 VC1469 PF05144 VC1469 VC1469 PF05155 VC1469 VC1470 PF01381 Helix-turn-helix VC1475 PF05144 VC1475 VC1475 PF05155 VC1475 VC1476 PF01381 Helix-turn-helix VC1477 PF01527 Transposase VC1478 PF00665 Integrase core domain VC1478 PF13276 VC1478 VC1480 PF12321 VC1480 VC1481 PF06303 Organiser of macrodomain of Terminus of chromosome VC1482 PF05362 Lon protease (S16) C-terminal proteolytic domain VC1482 PF13654 AAA domain VC1483 PF07977 FabA-like domain VC1484 PF04957 Ribosome modulation factor VC1485 PF11949 VC1485 VC1486 PF00005 ABC transporter VC1486 PF12848 ABC transporter VC1486 PF16326 VC1486 VC1487 PF05768 Glutaredoxin-like domain (DUF836) VC1488 PF01170 Putative RNA methylase family UPF0020 VC1488 PF02926 THUMP domain VC1488 PF10672 S-adenosylmethionine-dependent methyltransferase VC1490 PF07126 VC1490 VC1491 PF01180 Dihydroorotate dehydrogenase VC1492 PF05088 VC1492 VC1493 PF11197 VC1493 VC1494 PF01433 Peptidase family M1 VC1494 PF11940 Domain of unknown function (DUF3458) VC1496 PF00595 PDZ domain (Also known as DHR or GLGF) VC1496 PF03572 Peptidase family S41 VC1496 PF08180 VC1496 VC1496 PF11818 VC1496 VC1497 PF04352 ProQ/FINO family VC1498 PF13185 GAF domain VC1499 PF00005 ABC transporter VC1499 PF00664 ABC transporter transmembrane region VC1500 PF04403 VC1500 VC1501 PF02470 VC1501 VC1502 PF01189 NOL1/NOP2/sun family VC1502 PF13636 pre-rRNA processing and ribosome biogenesis VC1502 PF17125 VC1502 VC1503 PF13509 S1 domain VC1506 PF14539 Domain of unknown function (DUF4442) VC1507 PF00793 DAHP synthetase I family VC1508 PF04461 Protein of unknown function (DUF520) VC1509 PF02146 Sir2 family VC1511 PF01292 Prokaryotic cytochrome b561 VC1512 PF13247 4Fe-4S dicluster domain VC1514 PF10518 TAT (twin-arginine translocation) pathway signal sequence VC1515 PF02613 Nitrate reductase delta subunit VC1516 PF00037 4Fe-4S binding domain VC1516 PF12837 4Fe-4S binding domain VC1516 PF12838 4Fe-4S dicluster domain VC1517 PF11748 VC1517 VC1518 PF11749 VC1518 VC1519 PF02634 FdhD/NarQ family VC1520 PF00005 ABC transporter VC1520 PF12848 ABC transporter VC1521 PF00512 His Kinase A (phospho-acceptor) domain VC1521 PF00672 HAMP domain VC1521 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1521 PF17202 VC1521 VC1522 PF00072 Response regulator receiver domain VC1522 PF00158 Sigma-54 interaction domain VC1522 PF02954 Bacterial regulatory protein, Fis family VC1523 PF12849 PBP superfamily domain VC1524 PF00528 Binding-protein-dependent transport system inner membrane component VC1525 PF00005 ABC transporter VC1526 PF12804 MobA-like NTP transferase domain VC1527 PF00994 Probable molybdopterin binding domain VC1527 PF03205 Molybdopterin guanine dinucleotide synthesis protein B VC1527 PF03453 MoeA N-terminal region (domain I and II) VC1527 PF03454 MoeA C-terminal region (domain IV) VC1528 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC1531 PF11173 VC1531 VC1532 PF00480 ROK family VC1533 PF03942 VC1533 VC1534 PF04116 VC1534 VC1537 PF00877 NlpC/P60 family VC1538 PF12290 VC1538 VC1539 PF03881 Fructosamine kinase VC1539a PF14255 VC1539a VC1540 PF01554 MatE VC1541 PF11279 VC1541 VC1542 PF01068 ATP dependent DNA ligase domain VC1542 PF14743 DNA ligase OB-like domain VC1544 PF03544 Gram-negative bacterial TonB protein C-terminal VC1545 PF02472 Biopolymer transport protein ExbD/TolR VC1546 PF01618 VC1546 VC1547 PF01618 VC1547 VC1548 PF11932 VC1548 VC1549 PF13416 Bacterial extracellular solute-binding protein VC1550 PF00528 Binding-protein-dependent transport system inner membrane component VC1551 PF00528 Binding-protein-dependent transport system inner membrane component VC1552 PF00005 ABC transporter VC1553 PF00455 VC1553 VC1553 PF08220 DeoR-like helix-turn-helix domain VC1554 PF03009 Glycerophosphoryl diester phosphodiesterase family VC1555 PF04074 Domain of unknown function (DUF386) VC1556 PF01042 Endoribonuclease L-PSP VC1557 PF00356 Bacterial regulatory proteins, lacI family VC1557 PF13377 Periplasmic binding protein-like domain VC1558 PF00232 Glycosyl hydrolase family 1 VC1560 PF00141 Peroxidase VC1561 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC1561 PF03466 LysR substrate binding domain VC1562 PF00753 Metallo-beta-lactamase superfamily VC1565 PF02321 Outer membrane efflux protein VC1566 PF02687 VC1566 VC1566 PF12704 MacB-like periplasmic core domain VC1567 PF02687 VC1567 VC1567 PF12704 MacB-like periplasmic core domain VC1568 PF00005 ABC transporter VC1570 PF02322 VC1570 VC1571 PF01654 VC1571 VC1573 PF00206 Lyase VC1573 PF10415 Fumarase C C-terminus VC1574 PF04342 VC1574 VC1575 PF09900 VC1575 VC1576 PF04266 ASCH domain VC1577 PF03279 VC1577 VC1579 PF00501 AMP-binding enzyme VC1580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC1580 PF03466 LysR substrate binding domain VC1581 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains VC1582 PF10070 VC1582 VC1583 PF00080 Copper/zinc superoxide dismutase (SODC) VC1584 PF12796 Ankyrin repeats (3 copies) VC1585 PF00199 Catalase VC1585 PF06628 Catalase-related immune-responsive VC1587 PF04224 VC1587 VC1588 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC1588 PF03466 LysR substrate binding domain VC1589 PF03306 Alpha-acetolactate decarboxylase VC1590 PF00205 Thiamine pyrophosphate enzyme, central domain VC1590 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VC1590 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VC1591 PF13561 Enoyl-(Acyl carrier protein) reductase VC1592 PF00563 EAL domain VC1593 PF00990 GGDEF domain VC1594 PF01263 Aldose 1-epimerase VC1595 PF00288 GHMP kinases N terminal domain VC1595 PF08544 GHMP kinases C terminal VC1595 PF10509 Galactokinase galactose-binding signature VC1596 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VC1596 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VC1597 PF07690 Major Facilitator Superfamily VC1598 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC1599 PF00990 GGDEF domain VC1600 PF10881 VC1600 VC1602 PF00072 Response regulator receiver domain VC1602 PF01584 CheW-like domain VC1603 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC1604 PF00072 Response regulator receiver domain VC1604 PF12431 VC1604 VC1605 PF00989 PAS fold VC1605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1605 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VC1605 PF17203 VC1605 VC1606 PF02321 Outer membrane efflux protein VC1607 PF16576 VC1607 VC1608 PF12698 ABC-2 family transporter protein VC1609 PF12698 ABC-2 family transporter protein VC1610 PF13671 AAA domain VC1611 PF04204 Homoserine O-succinyltransferase VC1612 PF13424 Tetratricopeptide repeat VC1614 PF05971 Protein of unknown function (DUF890) VC1615 PF01863 Protein of unknown function DUF45 VC1616 PF00462 Glutaredoxin VC1617 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC1617 PF03466 LysR substrate binding domain VC1618 PF07690 Major Facilitator Superfamily VC1619 PF07209 VC1619 VC1621 PF02321 Outer membrane efflux protein VC1622 PF00691 OmpA family VC1623 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VC1624 PF03435 Saccharopine dehydrogenase VC1624 PF16653 VC1624 VC1627 PF06965 Na+/H+ antiporter 1 VC1628 PF07143 Hydroxyneurosporene synthase (CrtC) VC1628 PF17186 VC1628 VC1629 PF02687 VC1629 VC1630 PF00005 ABC transporter VC1631 PF01554 MatE VC1632 PF11066 VC1632 VC1632 PF13460 NADH(P)-binding VC1633 PF11140 VC1633 VC1634 PF07690 Major Facilitator Superfamily VC1635 PF00849 RNA pseudouridylate synthase VC1635 PF01479 S4 domain VC1636 PF00271 Helicase conserved C-terminal domain VC1636 PF04851 Type III restriction enzyme, res subunit VC1638 PF00072 Response regulator receiver domain VC1638 PF00486 Transcriptional regulatory protein, C terminal VC1639 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1640 PF01386 Ribosomal L25p family VC1641 PF00563 EAL domain VC1642 PF12614 VC1642 VC1643 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1643 PF00672 HAMP domain VC1643 PF12729 VC1643 VC1644 PF11301 VC1644 VC1645 PF13419 Haloacid dehalogenase-like hydrolase VC1647 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VC1647 PF12793 VC1647 VC1649 PF00089 Trypsin VC1650 PF01752 Collagenase VC1650 PF04151 Bacterial pre-peptidase C-terminal domain VC1650 PF08453 Peptidase family M9 N-terminal VC1651 PF00072 Response regulator receiver domain VC1652 PF00072 Response regulator receiver domain VC1652 PF00196 Bacterial regulatory proteins, luxR family VC1652 PF00563 EAL domain VC1653 PF00072 Response regulator receiver domain VC1653 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC1653 PF00512 His Kinase A (phospho-acceptor) domain VC1653 PF01627 Hpt domain VC1653 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1655 PF00571 CBS domain VC1655 PF01769 Divalent cation transporter VC1656 PF00892 EamA-like transporter family VC1658 PF03222 Tryptophan/tyrosine permease family VC1659 PF13437 HlyD family secretion protein VC1660 PF12698 ABC-2 family transporter protein VC1660a PF00005 ABC transporter VC1662 PF06945 VC1662 VC1663 PF03724 META domain VC1664 PF13416 Bacterial extracellular solute-binding protein VC1665 PF00528 Binding-protein-dependent transport system inner membrane component VC1666 PF00005 ABC transporter VC1667 PF01066 CDP-alcohol phosphatidyltransferase VC1668 PF00849 RNA pseudouridylate synthase VC1669 PF00209 Sodium:neurotransmitter symporter family VC1670 PF13091 PLD-like domain VC1670 PF13396 VC1670 VC1671 PF01053 Cys/Met metabolism PLP-dependent enzyme VC1672 PF03352 Methyladenine glycosylase VC1673 PF00873 AcrB/AcrD/AcrF family VC1674 PF13437 HlyD family secretion protein VC1674 PF13533 Biotin-lipoyl like VC1675 PF16576 VC1675 VC1676 PF04024 VC1676 VC1677 PF06667 VC1677 VC1678 PF04012 VC1678 VC1679 PF00158 Sigma-54 interaction domain VC1679 PF02954 Bacterial regulatory protein, Fis family VC1680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VC1681 PF00528 Binding-protein-dependent transport system inner membrane component VC1682 PF00528 Binding-protein-dependent transport system inner membrane component VC1682 PF12911 VC1682 VC1683 PF00005 ABC transporter VC1683 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VC1684 PF00005 ABC transporter VC1685 PF11150 VC1685 VC1686 PF11042 VC1686 VC1687 PF01368 DHH family VC1687 PF02833 DHHA2 domain VC1688 PF11449 VC1688 VC1692 PF00384 Molybdopterin oxidoreductase VC1692 PF01568 Molydopterin dinucleotide binding domain VC1693 PF03264 NapC/NirT cytochrome c family, N-terminal region VC1694 PF06796 VC1694 VC1695 PF01226 Formate/nitrite transporter VC1696 PF06146 VC1696 VC1697 PF13460 NADH(P)-binding VC1698 PF02698 DUF218 domain VC1700 PF04279 VC1700 VC1701 PF03061 Thioesterase superfamily VC1702 PF03795 YCII-related domain VC1703 PF16549 VC1703 VC1704 PF01717 Cobalamin-independent synthase, Catalytic domain VC1704 PF08267 Cobalamin-independent synthase, N-terminal domain VC1706 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC1706 PF03466 LysR substrate binding domain VC1707 PF14056 VC1707 VC1709 PF00675 Insulinase (Peptidase family M16) VC1709 PF05193 Peptidase M16 inactive domain VC1710 PF00563 EAL domain VC1710 PF13426 PAS domain VC1711 PF04055 Radical SAM superfamily VC1711 PF08497 VC1711 VC1711 PF11842 VC1711 VC1712 PF01810 VC1712 VC1713 PF01037 AsnC family VC1713 PF13412 Winged helix-turn-helix DNA-binding VC1714 PF04310 MukB N-terminal VC1714 PF13558 Putative exonuclease SbcCD, C subunit VC1714 PF16330 VC1714 VC1715 PF04288 MukE-like family VC1716 PF03882 KicB killing factor VC1716 PF17192 VC1716 VC1716 PF17193 VC1716 VC1717 PF08241 Methyltransferase domain VC1718 PF02698 DUF218 domain VC1719 PF00072 Response regulator receiver domain VC1719 PF00486 Transcriptional regulatory protein, C terminal VC1720 PF02613 Nitrate reductase delta subunit VC1721 PF00356 Bacterial regulatory proteins, lacI family VC1721 PF13377 Periplasmic binding protein-like domain VC1722 PF04993 TfoX N-terminal domain VC1722 PF04994 TfoX C-terminal domain VC1723 PF09335 VC1723 VC1724 PF09413 Domain of unknown function (DUF2007) VC1725 PF00561 alpha/beta hydrolase fold VC1726 PF00534 Glycosyl transferases group 1 VC1726 PF08323 Starch synthase catalytic domain VC1727 PF00483 Nucleotidyl transferase VC1730 PF01131 DNA topoisomerase VC1730 PF01396 VC1730 VC1730 PF01751 Toprim domain VC1730 PF08272 Topoisomerase I zinc-ribbon-like VC1731 PF10692 Protein of unknown function (DUF2498) VC1732 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VC1735 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VC1736 PF04376 VC1736 VC1736 PF04377 VC1736 VC1737 PF01176 Translation initiation factor 1A / IF-1 VC1740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VC1740 PF02770 Acyl-CoA dehydrogenase, middle domain VC1740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VC1740 PF09317 VC1740 VC1741 PF00440 Bacterial regulatory proteins, tetR family VC1744 PF07383 VC1744 VC1745 PF00171 Aldehyde dehydrogenase family VC1746 PF00440 Bacterial regulatory proteins, tetR family VC1746 PF14246 AefR-like transcriptional repressor, C-terminal region VC1749 PF01103 Surface antigen VC1750 PF13265 VC1750 VC1751 PF00924 Mechanosensitive ion channel VC1753 PF04403 VC1753 VC1754 PF02470 VC1754 VC1755 PF03886 Protein of unknown function (DUF330) VC1756 PF16576 VC1756 VC1757 PF00873 AcrB/AcrD/AcrF family VC1758 PF00589 Phage integrase family VC1758 PF13356 Domain of unknown function (DUF4102) VC1759 PF00589 Phage integrase family VC1762 PF15611 VC1762 VC1763 PF00691 OmpA family VC1765 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VC1765 PF04851 Type III restriction enzyme, res subunit VC1766 PF03235 VC1766 VC1766 PF07510 VC1766 VC1767 PF03235 VC1767 VC1768 PF01420 Type I restriction modification DNA specificity domain VC1769 PF02384 N-6 DNA Methylase VC1769 PF12161 HsdM N-terminal domain VC1772 PF13280 VC1772 VC1773 PF07646 Kelch motif VC1774 PF01344 Kelch motif VC1775 PF01380 SIS domain VC1775 PF01418 Helix-turn-helix domain, rpiR family VC1776 PF00701 Dihydrodipicolinate synthetase family VC1777 PF06808 VC1777 VC1778 PF04290 VC1778 VC1779 PF03480 Bacterial extracellular solute-binding protein, family 7 VC1781 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VC1782 PF00480 ROK family VC1783 PF01979 Amidohydrolase family VC1784 PF09264 Vibrio cholerae sialidase, lectin insertion VC1784 PF13088 BNR repeat-like domain VC1785 PF05930 Prophage CP4-57 regulatory protein (AlpA) VC1786 PF04002 RadC-like JAB domain VC1789 PF00665 Integrase core domain VC1789 PF13276 VC1789 VC1790 PF01527 Transposase VC1792 PF10109 VC1792 VC1795 PF08765 Mor transcription activator family VC1796 PF08765 Mor transcription activator family VC1798 PF13401 AAA domain VC1799 PF00665 Integrase core domain VC1804 PF10980 Protein of unknown function (DUF2787) VC1805 PF10980 Protein of unknown function (DUF2787) VC1806 PF01926 50S ribosome-binding GTPase VC1809 PF05930 Prophage CP4-57 regulatory protein (AlpA) VC1810 PF11661 VC1810 VC1811 PF01936 NYN domain VC1812 PF04134 VC1812 VC1814 PF00875 DNA photolyase VC1814 PF03441 FAD binding domain of DNA photolyase VC1815 PF00106 short chain dehydrogenase VC1816 PF09905 Uncharacterized conserved protein (DUF2132) VC1817 PF00158 Sigma-54 interaction domain VC1817 PF01590 GAF domain VC1817 PF02954 Bacterial regulatory protein, Fis family VC1819 PF00171 Aldehyde dehydrogenase family VC1820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VC1821 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VC1822 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VC1822 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VC1822 PF02378 Phosphotransferase system, EIIC VC1823 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VC1824 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VC1825 PF12833 Helix-turn-helix domain VC1826 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VC1826 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VC1826 PF02378 Phosphotransferase system, EIIC VC1827 PF01238 Phosphomannose isomerase type I VC1828 PF06610 VC1828 VC1831 PF00072 Response regulator receiver domain VC1831 PF00512 His Kinase A (phospho-acceptor) domain VC1831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1831 PF02743 Cache domain VC1832 PF03695 Uncharacterised protein family (UPF0149) VC1833 PF02445 Quinolinate synthetase A protein VC1834 PF13174 Tetratricopeptide repeat VC1834 PF13432 Tetratricopeptide repeat VC1834 PF16331 VC1834 VC1835 PF00691 OmpA family VC1836 PF04052 TolB amino-terminal domain VC1836 PF07676 WD40-like Beta Propeller Repeat VC1837 PF06519 TolA C-terminal VC1838 PF02472 Biopolymer transport protein ExbD/TolR VC1839 PF01618 VC1839 VC1840 PF03061 Thioesterase superfamily VC1841 PF09600 VC1841 VC1842 PF08173 VC1842 VC1843 PF02322 VC1843 VC1844 PF01654 VC1844 VC1845 PF05491 Holliday junction DNA helicase ruvB C-terminus VC1845 PF05496 Holliday junction DNA helicase ruvB N-terminus VC1846 PF01330 RuvA N terminal domain VC1846 PF07499 RuvA, C-terminal domain VC1846 PF14520 Helix-hairpin-helix domain VC1847 PF02075 Crossover junction endodeoxyribonuclease RuvC VC1848 PF01406 tRNA synthetases class I (C) catalytic domain VC1848 PF09190 DALR domain VC1849 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VC1850 PF00149 Calcineurin-like phosphoesterase VC1851 PF00563 EAL domain VC1851 PF08668 HDOD domain VC1852 PF02810 SEC-C motif VC1853 PF09829 VC1853 VC1854 PF13609 Gram-negative porin VC1855 PF06733 DEAD_2 VC1855 PF13307 Helicase C-terminal domain VC1856 PF01925 VC1856 VC1857 PF07445 Primosomal replication protein priB and priC VC1858 PF10689 VC1858 VC1859 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1859 PF00672 HAMP domain VC1860 PF03372 Endonuclease/Exonuclease/phosphatase family VC1861 PF00528 Binding-protein-dependent transport system inner membrane component VC1862 PF00528 Binding-protein-dependent transport system inner membrane component VC1863 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC1864 PF00005 ABC transporter VC1865 PF11840 VC1865 VC1866 PF01228 Glycine radical VC1866 PF02901 Pyruvate formate lyase VC1867 PF09982 Uncharacterized protein conserved in bacteria (DUF2219) VC1868 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1868 PF00672 HAMP domain VC1869 PF04055 Radical SAM superfamily VC1869 PF13353 4Fe-4S single cluster domain VC1870 PF01891 Cobalt uptake substrate-specific transmembrane region VC1871 PF03887 YfbU domain VC1872 PF06798 VC1872 VC1872 PF08298 PrkA AAA domain VC1873 PF04285 VC1873 VC1874 PF04293 VC1874 VC1875 PF02348 Cytidylyltransferase VC1876 PF03966 Trm112p-like protein VC1877 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VC1878 PF00005 ABC transporter VC1878 PF00664 ABC transporter transmembrane region VC1879 PF00753 Metallo-beta-lactamase superfamily VC1879 PF03772 VC1879 VC1879 PF13567 VC1879 VC1880 PF09835 VC1880 VC1882 PF02687 VC1882 VC1882 PF12704 MacB-like periplasmic core domain VC1883 PF00005 ABC transporter VC1884 PF02687 VC1884 VC1884 PF12704 MacB-like periplasmic core domain VC1886 PF00270 DEAD/DEAH box helicase VC1886 PF00271 Helicase conserved C-terminal domain VC1886 PF02559 CarD-like/TRCF domain VC1886 PF03461 TRCF domain VC1887 PF10972 VC1887 VC1888 PF16458 VC1888 VC1889 PF13302 Acetyltransferase (GNAT) domain VC1890 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC1892 PF05728 Uncharacterised protein family (UPF0227) VC1893 PF01636 Phosphotransferase enzyme family VC1894 PF13036 Protein of unknown function (DUF3897) VC1895 PF07233 Protein of unknown function (DUF1425) VC1897 PF01230 HIT domain VC1898 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1898 PF00672 HAMP domain VC1899 PF09002 Domain of unknown function (DUF1887) VC1900 PF00392 Bacterial regulatory proteins, gntR family VC1900 PF07840 FadR C-terminal domain VC1901 PF06450 VC1901 VC1902 PF02600 Disulfide bond formation protein DsbB VC1903 PF01580 FtsK/SpoIIIE family VC1903 PF09397 Ftsk gamma domain VC1903 PF13491 VC1903 VC1904 PF01037 AsnC family VC1904 PF13412 Winged helix-turn-helix DNA-binding VC1905 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VC1905 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VC1906 PF13679 VC1906 VC1907 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC1907 PF03466 LysR substrate binding domain VC1910 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VC1911 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VC1912 PF13176 Tetratricopeptide repeat VC1913 PF06305 VC1913 VC1914 PF00216 Bacterial DNA-binding protein VC1915 PF00575 S1 RNA binding domain VC1916 PF02224 Cytidylate kinase VC1917 PF12836 Helix-hairpin-helix motif VC1918 PF13616 PPIC-type PPIASE domain VC1918 PF13624 SurA N-terminal domain VC1919 PF00216 Bacterial DNA-binding protein VC1920 PF00004 ATPase family associated with various cellular activities (AAA) VC1920 PF02190 ATP-dependent protease La (LON) domain VC1920 PF05362 Lon protease (S16) C-terminal proteolytic domain VC1921 PF06689 ClpX C4-type zinc finger VC1921 PF07724 AAA domain (Cdc48 subfamily) VC1921 PF10431 C-terminal, D2-small domain, of ClpB protein VC1922 PF00574 Clp protease VC1923 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VC1923 PF05697 Bacterial trigger factor protein (TF) VC1923 PF05698 Bacterial trigger factor protein (TF) C-terminus VC1925 PF00512 His Kinase A (phospho-acceptor) domain VC1925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC1926 PF00072 Response regulator receiver domain VC1926 PF00158 Sigma-54 interaction domain VC1926 PF02954 Bacterial regulatory protein, Fis family VC1927 PF06808 VC1927 VC1928 PF04290 VC1928 VC1929 PF03480 Bacterial extracellular solute-binding protein, family 7 VC1931 PF02696 VC1931 VC1934 PF00563 EAL domain VC1934 PF00990 GGDEF domain VC1935 PF01066 CDP-alcohol phosphatidyltransferase VC1936 PF01148 Cytidylyltransferase family VC1937 PF01553 Acyltransferase VC1938 PF13279 Thioesterase-like superfamily VC1939 PF01810 VC1939 VC1940 PF12710 haloacid dehalogenase-like hydrolase VC1941 PF10129 VC1941 VC1942 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VC1942 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VC1944 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VC1945 PF01494 FAD binding domain VC1947 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC1947 PF03466 LysR substrate binding domain VC1949 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VC1949 PF05141 Pyoverdine/dityrosine biosynthesis protein VC1950 PF00384 Molybdopterin oxidoreductase VC1950 PF01568 Molydopterin dinucleotide binding domain VC1951 PF03264 NapC/NirT cytochrome c family, N-terminal region VC1952 PF00704 Glycosyl hydrolases family 18 VC1952 PF02839 Carbohydrate binding domain VC1953 PF01773 Na+ dependent nucleoside transporter N-terminus VC1953 PF07662 Na+ dependent nucleoside transporter C-terminus VC1953 PF07670 Nucleoside recognition VC1955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC1955 PF03466 LysR substrate binding domain VC1956 PF13406 Transglycosylase SLT domain VC1957 PF05166 YcgL domain VC1959 PF03775 Septum formation inhibitor MinC, C-terminal domain VC1959 PF05209 Septum formation inhibitor MinC, N-terminal domain VC1960 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VC1961 PF03776 Septum formation topological specificity factor MinE VC1962 PF04170 NlpE N-terminal domain VC1963 PF06844 Protein of unknown function (DUF1244) VC1964 PF04280 Tim44-like domain VC1964 PF07466 VC1964 VC1965 PF13305 WHG domain VC1966 PF01553 Acyltransferase VC1966 PF07690 Major Facilitator Superfamily VC1967 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC1967 PF00672 HAMP domain VC1968 PF01381 Helix-turn-helix VC1970 PF03594 VC1970 VC1971 PF00501 AMP-binding enzyme VC1972 PF13378 Enolase C-terminal domain-like VC1973 PF00378 Enoyl-CoA hydratase/isomerase family VC1974 PF12697 Alpha/beta hydrolase family VC1975 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VC1975 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VC1975 PF16582 VC1975 VC1976 PF00425 chorismate binding enzyme VC1977 PF00155 Aminotransferase class I and II VC1978 PF13023 HD domain VC1979 PF01966 HD domain VC1979 PF13286 Phosphohydrolase-associated domain VC1980 PF03942 VC1980 VC1981 PF01694 Rhomboid family VC1983 PF01432 Peptidase family M3 VC1984 PF00570 HRDC domain VC1984 PF01612 3'-5' exonuclease VC1985 PF00501 AMP-binding enzyme VC1985 PF13193 AMP-binding enzyme C-terminal domain VC1986 PF12697 Alpha/beta hydrolase family VC1987 PF03843 VC1987 VC1989 PF00814 Glycoprotease family VC1990 PF00270 DEAD/DEAH box helicase VC1990 PF13307 Helicase C-terminal domain VC1992 PF00551 Formyl transferase VC1992 PF01842 ACT domain VC1993 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VC1993 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC1994 PF01343 Peptidase family S49 VC1995 PF00710 Asparaginase VC1996 PF07023 VC1996 VC1997 PF11207 VC1997 VC1998 PF01641 SelR domain VC2000 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC2000 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VC2001 PF01263 Aldose 1-epimerase VC2002 PF11059 VC2002 VC2003 PF13649 Methyltransferase domain VC2004 PF04187 Protein of unknown function, DUF399 VC2006 PF00072 Response regulator receiver domain VC2006 PF01584 CheW-like domain VC2007 PF00480 ROK family VC2008 PF00224 Pyruvate kinase, barrel domain VC2008 PF02887 Pyruvate kinase, alpha/beta domain VC2009 PF01734 Patatin-like phospholipase VC2012 PF00209 Sodium:neurotransmitter symporter family VC2013 PF00367 phosphotransferase system, EIIB VC2013 PF02378 Phosphotransferase system, EIIC VC2014 PF01026 TatD related DNase VC2015 PF09115 DNA polymerase III, delta subunit, C terminal VC2015 PF13177 DNA polymerase III, delta subunit VC2016 PF02223 Thymidylate kinase VC2017 PF02618 YceG-like family VC2018 PF01063 Aminotransferase class IV VC2019 PF00109 Beta-ketoacyl synthase, N-terminal domain VC2019 PF02801 Beta-ketoacyl synthase, C-terminal domain VC2020 PF00550 Phosphopantetheine attachment site VC2021 PF13561 Enoyl-(Acyl carrier protein) reductase VC2022 PF00698 Acyl transferase domain VC2023 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VC2023 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VC2024 PF02504 Fatty acid synthesis protein VC2025 PF01783 Ribosomal L32p protein family VC2026 PF02620 VC2026 VC2027 PF02545 Maf-like protein VC2028 PF00849 RNA pseudouridylate synthase VC2028 PF01479 S4 domain VC2030 PF00575 S1 RNA binding domain VC2030 PF10150 Ribonuclease E/G family VC2031 PF00916 VC2031 VC2031 PF01740 STAS domain VC2033 PF00171 Aldehyde dehydrogenase family VC2033 PF00465 Iron-containing alcohol dehydrogenase VC2035 PF01914 VC2035 VC2036 PF01118 Semialdehyde dehydrogenase, NAD binding domain VC2036 PF02774 Semialdehyde dehydrogenase, dimerisation domain VC2037 PF03553 VC2037 VC2038 PF01627 Hpt domain VC2039 PF04245 VC2039 VC2040 PF07208 Protein of unknown function (DUF1414) VC2041 PF00884 Sulfatase VC2041 PF11893 VC2041 VC2042 PF00850 Histone deacetylase domain VC2043 PF01131 DNA topoisomerase VC2043 PF01751 Toprim domain VC2044 PF00462 Glutaredoxin VC2045 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VC2045 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VC2046 PF11993 VC2046 VC2047 PF00106 short chain dehydrogenase VC2048 PF04333 VC2048 VC2049 PF14559 Tetratricopeptide repeat VC2050 PF03918 Cytochrome C biogenesis protein VC2051 PF08534 Redoxin VC2052 PF01578 VC2052 VC2052 PF16327 VC2052 VC2053 PF03100 CcmE VC2054 PF04995 VC2054 VC2055 PF01578 VC2055 VC2056 PF03379 VC2056 VC2057 PF00005 ABC transporter VC2058 PF10975 VC2058 VC2059 PF01584 CheW-like domain VC2060 PF01584 CheW-like domain VC2061 PF13614 AAA domain VC2062 PF00072 Response regulator receiver domain VC2062 PF01339 CheB methylesterase VC2063 PF01584 CheW-like domain VC2063 PF01627 Hpt domain VC2063 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC2063 PF02895 Signal transducing histidine kinase, homodimeric domain VC2064 PF04344 Chemotaxis phosphatase, CheZ VC2065 PF00072 Response regulator receiver domain VC2066 PF04539 Sigma-70 region 3 VC2066 PF04542 Sigma-70 region 2 VC2066 PF04545 Sigma-70, region 4 VC2067 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VC2068 PF00448 SRP54-type protein, GTPase domain VC2069 PF00771 FHIPEP family VC2070 PF00300 Histidine phosphatase superfamily (branch 1) VC2072 PF00675 Insulinase (Peptidase family M16) VC2072 PF05193 Peptidase M16 inactive domain VC2072 PF16187 VC2072 VC2073 PF06185 YecM protein VC2074 PF00750 tRNA synthetases class I (R) VC2074 PF03485 Arginyl tRNA synthetase N terminal domain VC2074 PF05746 DALR anticodon binding domain VC2075 PF01230 HIT domain VC2076 PF09012 FeoC like transcriptional regulator VC2077 PF02421 Ferrous iron transport protein B VC2077 PF07664 VC2077 VC2077 PF07670 Nucleoside recognition VC2078 PF04023 FeoA domain VC2080 PF12833 Helix-turn-helix domain VC2081 PF01297 Periplasmic solute binding protein family VC2082 PF00005 ABC transporter VC2083 PF00950 VC2083 VC2084 PF00549 CoA-ligase VC2084 PF02629 CoA binding domain VC2085 PF00549 CoA-ligase VC2085 PF08442 ATP-grasp domain VC2086 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VC2086 PF00364 Biotin-requiring enzyme VC2086 PF02817 e3 binding domain VC2087 PF00676 Dehydrogenase E1 component VC2087 PF02779 Transketolase, pyrimidine binding domain VC2087 PF16078 VC2087 VC2087 PF16870 VC2087 VC2088 PF13085 2Fe-2S iron-sulfur cluster binding domain VC2088 PF13534 4Fe-4S dicluster domain VC2089 PF00890 FAD binding domain VC2089 PF02910 Fumarate reductase flavoprotein C-term VC2090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VC2091 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VC2092 PF00285 Citrate synthase VC2093 PF01784 NIF3 (NGG1p interacting factor 3) VC2094 PF08907 VC2094 VC2095 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VC2095 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VC2095 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VC2095 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VC2096 PF03925 SeqA protein VC2097 PF12697 Alpha/beta hydrolase family VC2098 PF10981 VC2098 VC2099 PF00258 Flavodoxin VC2100 PF04172 VC2100 VC2101 PF03788 VC2101 VC2103 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC2103 PF03466 LysR substrate binding domain VC2106 PF01475 Ferric uptake regulator family VC2107 PF01118 Semialdehyde dehydrogenase, NAD binding domain VC2107 PF02774 Semialdehyde dehydrogenase, dimerisation domain VC2108 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VC2108 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VC2108 PF11890 Domain of unknown function (DUF3410) VC2110 PF01266 FAD dependent oxidoreductase VC2110 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VC2111 PF03358 NADPH-dependent FMN reductase VC2112 PF08891 VC2112 VC2113 PF04315 VC2113 VC2115 PF03458 VC2115 VC2116 PF01264 Chorismate synthase VC2118 PF05175 Methyltransferase small domain VC2119 PF01713 Smr domain VC2120 PF01312 FlhB HrpN YscU SpaS Family VC2121 PF01311 VC2121 VC2122 PF01313 VC2122 VC2123 PF00813 VC2123 VC2124 PF04347 VC2124 VC2125 PF01052 Surface presentation of antigens (SPOA) VC2126 PF01052 Surface presentation of antigens (SPOA) VC2126 PF02154 Flagellar motor switch protein FliM VC2127 PF03748 VC2127 VC2128 PF02120 Flagellar hook-length control protein FliK VC2129 PF02050 Flagellar FliJ protein VC2130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VC2131 PF02108 VC2131 VC2132 PF01706 FliG C-terminal domain VC2132 PF14841 FliG middle domain VC2132 PF14842 FliG N-terminal domain VC2133 PF01514 Secretory protein of YscJ/FliF family VC2133 PF08345 VC2133 VC2134 PF02049 VC2134 VC2135 PF00072 Response regulator receiver domain VC2135 PF00158 Sigma-54 interaction domain VC2135 PF02954 Bacterial regulatory protein, Fis family VC2136 PF00512 His Kinase A (phospho-acceptor) domain VC2136 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC2136 PF13188 PAS domain VC2137 PF00158 Sigma-54 interaction domain VC2137 PF02954 Bacterial regulatory protein, Fis family VC2137 PF06490 VC2137 VC2138 PF02561 Flagellar protein FliS VC2140 PF02465 VC2140 VC2140 PF07195 VC2140 VC2140 PF07196 Flagellin hook IN motif VC2141 PF03646 FlaG protein VC2142 PF00669 Bacterial flagellin N-terminal helical region VC2142 PF00700 Bacterial flagellin C-terminal helical region VC2142 PF07196 Flagellin hook IN motif VC2143 PF00669 Bacterial flagellin N-terminal helical region VC2143 PF00700 Bacterial flagellin C-terminal helical region VC2143 PF07196 Flagellin hook IN motif VC2144 PF00669 Bacterial flagellin N-terminal helical region VC2144 PF00700 Bacterial flagellin C-terminal helical region VC2144 PF07196 Flagellin hook IN motif VC2145 PF04261 Dyp-type peroxidase family VC2146 PF11143 VC2146 VC2147 PF11169 VC2147 VC2149 PF09904 Winged helix-turn helix VC2150 PF03960 ArsC family VC2152 PF01546 Peptidase family M20/M25/M40 VC2152 PF07687 Peptidase dimerisation domain VC2153 PF02557 D-alanyl-D-alanine carboxypeptidase VC2154 PF11446 VC2154 VC2156 PF06804 NlpB/DapX lipoprotein VC2157 PF00701 Dihydrodipicolinate synthetase family VC2159 PF13740 ACT domain VC2160 PF00578 AhpC/TSA family VC2161 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC2161 PF00672 HAMP domain VC2161 PF02743 Cache domain VC2162 PF01594 VC2162 VC2163 PF01206 Sulfurtransferase TusA VC2164 PF01435 Peptidase family M48 VC2164 PF13181 Tetratricopeptide repeat VC2164 PF14559 Tetratricopeptide repeat VC2165 PF03960 ArsC family VC2166 PF03358 NADPH-dependent FMN reductase VC2167 PF09842 VC2167 VC2168 PF09839 VC2168 VC2171 PF00860 Permease family VC2172 PF04073 Aminoacyl-tRNA editing domain VC2174 PF00149 Calcineurin-like phosphoesterase VC2174 PF02872 5'-nucleotidase, C-terminal domain VC2175 PF00793 DAHP synthetase I family VC2176 PF13369 VC2176 VC2176 PF13371 Tetratricopeptide repeat VC2177 PF04247 VC2177 VC2178 PF13847 Methyltransferase domain VC2179 PF00472 RF-1 domain VC2179 PF03462 PCRF domain VC2180 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VC2180 PF01488 Shikimate / quinate 5-dehydrogenase VC2180 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VC2181 PF03550 Outer membrane lipoprotein LolB VC2182 PF00288 GHMP kinases N terminal domain VC2182 PF08544 GHMP kinases C terminal VC2183 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VC2183 PF14572 Phosphoribosyl synthetase-associated domain VC2184 PF01195 Peptidyl-tRNA hydrolase VC2185 PF01926 50S ribosome-binding GTPase VC2185 PF06071 Protein of unknown function (DUF933) VC2187 PF00669 Bacterial flagellin N-terminal helical region VC2187 PF00700 Bacterial flagellin C-terminal helical region VC2187 PF07196 Flagellin hook IN motif VC2188 PF00669 Bacterial flagellin N-terminal helical region VC2188 PF00700 Bacterial flagellin C-terminal helical region VC2188 PF07196 Flagellin hook IN motif VC2190 PF00669 Bacterial flagellin N-terminal helical region VC2190 PF00700 Bacterial flagellin C-terminal helical region VC2191 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VC2192 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VC2192 PF10135 VC2192 VC2193 PF02119 VC2193 VC2194 PF02107 VC2194 VC2195 PF00460 Flagella basal body rod protein VC2195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VC2196 PF00460 Flagella basal body rod protein VC2196 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VC2197 PF00460 Flagella basal body rod protein VC2197 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VC2197 PF07559 Flagellar basal body protein FlaE VC2198 PF03963 VC2198 VC2198 PF13860 FlgD Ig-like domain VC2198 PF13861 FlgD Tudor-like domain VC2199 PF00460 Flagella basal body rod protein VC2199 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VC2201 PF01739 CheR methyltransferase, SAM binding domain VC2201 PF03705 CheR methyltransferase, all-alpha domain VC2202 PF00072 Response regulator receiver domain VC2202 PF01584 CheW-like domain VC2203 PF13144 SAF-like VC2204 PF04316 Anti-sigma-28 factor, FlgM VC2205 PF05130 FlgN protein VC2206 PF02169 LPP20 lipoprotein VC2208 PF16538 VC2208 VC2208 PF16539 VC2208 VC2208 PF16548 VC2208 VC2210 PF04954 Siderophore-interacting protein VC2210 PF08021 Siderophore-interacting FAD-binding domain VC2211 PF00593 TonB dependent receptor VC2211 PF07715 TonB-dependent Receptor Plug Domain VC2213 PF00691 OmpA family VC2213 PF01389 OmpA-like transmembrane domain VC2214 PF00749 tRNA synthetases class I (E and Q), catalytic domain VC2215 PF00122 E1-E2 ATPase VC2215 PF00403 Heavy-metal-associated domain VC2215 PF00702 haloacid dehalogenase-like hydrolase VC2216 PF04214 VC2216 VC2217 PF00728 Glycosyl hydrolase family 20, catalytic domain VC2217 PF02838 Glycosyl hydrolase family 20, domain 2 VC2217 PF03173 Putative carbohydrate binding domain VC2217 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VC2220 PF01963 VC2220 VC2221 PF11346 VC2221 VC2222 PF01713 Smr domain VC2223 PF00849 RNA pseudouridylate synthase VC2223 PF01479 S4 domain VC2224 PF00990 GGDEF domain VC2224 PF02743 Cache domain VC2225 PF14681 Uracil phosphoribosyltransferase VC2226 PF00586 AIR synthase related protein, N-terminal domain VC2226 PF02769 AIR synthase related protein, C-terminal domain VC2227 PF00551 Formyl transferase VC2229 PF13230 Glutamine amidotransferases class-II VC2230 PF13580 SIS domain VC2231 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VC2231 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VC2231 PF09317 VC2231 VC2233 PF00929 Exonuclease VC2234 PF00075 RNase H VC2235 PF08241 Methyltransferase domain VC2236 PF00753 Metallo-beta-lactamase superfamily VC2236 PF16123 VC2236 VC2237 PF01464 Transglycosylase SLT domain VC2237 PF01476 LysM domain VC2238 PF03372 Endonuclease/Exonuclease/phosphatase family VC2239 PF00543 Nitrogen regulatory protein P-II VC2240 PF05870 Phenolic acid decarboxylase (PAD) VC2241 PF00034 Cytochrome c VC2242 PF01171 PP-loop family VC2242 PF09179 TilS substrate binding domain VC2242 PF11734 TilS substrate C-terminal domain VC2244 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VC2245 PF01336 OB-fold nucleic acid binding domain VC2245 PF02811 PHP domain VC2245 PF07733 Bacterial DNA polymerase III alpha subunit VC2245 PF14579 Helix-hairpin-helix motif VC2246 PF01351 Ribonuclease HII VC2247 PF02684 VC2247 VC2248 PF00132 Bacterial transferase hexapeptide (six repeats) VC2248 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VC2249 PF07977 FabA-like domain VC2250 PF00132 Bacterial transferase hexapeptide (six repeats) VC2250 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VC2250 PF14602 Hexapeptide repeat of succinyl-transferase VC2251 PF03938 Outer membrane protein (OmpH-like) VC2252 PF01103 Surface antigen VC2252 PF07244 Surface antigen variable number repeat VC2253 PF00595 PDZ domain (Also known as DHR or GLGF) VC2253 PF02163 Peptidase family M50 VC2254 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VC2254 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal VC2254 PF13288 DXP reductoisomerase C-terminal domain VC2255 PF01148 Cytidylyltransferase family VC2256 PF01255 Putative undecaprenyl diphosphate synthase VC2257 PF01765 Ribosome recycling factor VC2258 PF00696 Amino acid kinase family VC2259 PF00889 Elongation factor TS VC2260 PF00318 Ribosomal protein S2 VC2261 PF00557 Metallopeptidase family M24 VC2262 PF01909 Nucleotidyltransferase domain VC2262 PF01966 HD domain VC2262 PF08335 GlnD PII-uridylyltransferase VC2264 PF11944 VC2264 VC2265 PF04608 Phosphatidylglycerophosphatase A VC2266 PF00586 AIR synthase related protein, N-terminal domain VC2266 PF02769 AIR synthase related protein, C-terminal domain VC2267 PF01029 NusB family VC2268 PF00885 6,7-dimethyl-8-ribityllumazine synthase VC2269 PF00925 GTP cyclohydrolase II VC2269 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VC2270 PF00677 Lumazine binding domain VC2271 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VC2271 PF01872 RibD C-terminal domain VC2272 PF03477 ATP cone domain VC2273 PF00171 Aldehyde dehydrogenase family VC2274 PF00696 Amino acid kinase family VC2274 PF01472 PUA domain VC2275 PF07417 Transcriptional regulator Crl VC2276 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VC2277 PF00156 Phosphoribosyl transferase domain VC2278 PF00860 Permease family VC2279 PF01546 Peptidase family M20/M25/M40 VC2279 PF07687 Peptidase dimerisation domain VC2280 PF05618 Putative ATP-dependant zinc protease VC2281 PF08443 RimK-like ATP-grasp domain VC2282 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VC2283 PF00209 Sodium:neurotransmitter symporter family VC2285 PF00990 GGDEF domain VC2285 PF05228 VC2285 VC2286 PF11101 VC2286 VC2287 PF00817 impB/mucB/samB family VC2287 PF11798 IMS family HHH motif VC2288 PF04400 VC2288 VC2289 PF02424 ApbE family VC2290 PF00111 2Fe-2S iron-sulfur cluster binding domain VC2290 PF00175 Oxidoreductase NAD-binding domain VC2290 PF00970 Oxidoreductase FAD-binding domain VC2291 PF02508 VC2291 VC2292 PF02508 VC2292 VC2293 PF04205 FMN-binding domain VC2294 PF03116 VC2294 VC2295 PF05896 VC2295 VC2295 PF11973 VC2295 VC2296 PF01722 BolA-like protein VC2297 PF05175 Methyltransferase small domain VC2298 PF03923 VC2298 VC2299 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VC2300 PF07690 Major Facilitator Superfamily VC2301 PF12973 ChrR Cupin-like domain VC2301 PF13490 Putative zinc-finger VC2302 PF04542 Sigma-70 region 2 VC2302 PF04545 Sigma-70, region 4 VC2303 PF02190 ATP-dependent protease La (LON) domain VC2305 PF03502 Nucleoside-specific channel-forming protein, Tsx VC2307 PF02558 Ketopantoate reductase PanE/ApbA VC2307 PF08546 Ketopantoate reductase PanE/ApbA C terminal VC2308 PF01965 DJ-1/PfpI family VC2309 PF00266 Aminotransferase class-V VC2310 PF02657 Fe-S metabolism associated domain VC2311 PF00899 ThiF family VC2312 PF03562 MltA specific insert domain VC2312 PF06725 3D domain VC2314 PF11012 VC2314 VC2316 PF00696 Amino acid kinase family VC2319 PF13538 UvrD-like helicase C-terminal domain VC2319 PF13604 AAA domain VC2320 PF00580 UvrD/REP helicase N-terminal domain VC2320 PF12705 PD-(D/E)XK nuclease superfamily VC2320 PF13361 UvrD-like helicase C-terminal domain VC2322 PF04257 Exodeoxyribonuclease V, gamma subunit VC2323 PF03595 Voltage-dependent anion channel VC2324 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC2324 PF03466 LysR substrate binding domain VC2326 PF07130 YebG protein VC2329 PF14602 Hexapeptide repeat of succinyl-transferase VC2329 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VC2329 PF14790 Tetrahydrodipicolinate N-succinyltransferase N-terminal VC2330 PF05940 VC2330 VC2332 PF11814 VC2332 VC2332 PF13673 Acetyltransferase (GNAT) domain VC2333 PF08443 RimK-like ATP-grasp domain VC2333 PF14401 VC2333 VC2334 PF01544 CorA-like Mg2+ transporter protein VC2335 PF06094 AIG2-like family VC2336 PF01588 Putative tRNA binding domain VC2337 PF00356 Bacterial regulatory proteins, lacI family VC2337 PF13377 Periplasmic binding protein-like domain VC2339 PF02417 VC2339 VC2340 PF13487 HD domain VC2341 PF00501 AMP-binding enzyme VC2342 PF00009 Elongation factor Tu GTP binding domain VC2342 PF00679 Elongation factor G C-terminus VC2342 PF03144 Elongation factor Tu domain 2 VC2342 PF03764 Elongation factor G, domain IV VC2342 PF14492 Elongation Factor G, domain II VC2343 PF13481 AAA domain VC2343 PF13541 Subunit ChlI of Mg-chelatase VC2344 PF07238 PilZ domain VC2345 PF00702 haloacid dehalogenase-like hydrolase VC2346 PF10144 VC2346 VC2347 PF01048 Phosphorylase superfamily VC2348 PF01676 Metalloenzyme superfamily VC2349 PF00591 Glycosyl transferase family, a/b domain VC2349 PF02885 Glycosyl transferase family, helical bundle domain VC2349 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VC2350 PF01791 DeoC/LacD family aldolase VC2352 PF01773 Na+ dependent nucleoside transporter N-terminus VC2352 PF07662 Na+ dependent nucleoside transporter C-terminus VC2352 PF07670 Nucleoside recognition VC2353 PF01026 TatD related DNase VC2355 PF03883 VC2355 VC2356 PF01235 VC2356 VC2357 PF12065 VC2357 VC2358 PF01814 Hemerythrin HHE cation binding domain VC2359 PF03167 Uracil DNA glycosylase superfamily VC2360 PF01261 Xylose isomerase-like TIM barrel VC2361 PF01228 Glycine radical VC2362 PF00291 Pyridoxal-phosphate dependent enzyme VC2362 PF14821 Threonine synthase N terminus VC2363 PF00288 GHMP kinases N terminal domain VC2363 PF08544 GHMP kinases C terminal VC2364 PF00696 Amino acid kinase family VC2364 PF00742 Homoserine dehydrogenase VC2364 PF01842 ACT domain VC2364 PF03447 Homoserine dehydrogenase, NAD binding domain VC2364 PF13840 ACT domain VC2366 PF03737 Demethylmenaquinone methyltransferase VC2367 PF11697 VC2367 VC2368 PF00072 Response regulator receiver domain VC2368 PF00486 Transcriptional regulatory protein, C terminal VC2369 PF00072 Response regulator receiver domain VC2369 PF00512 His Kinase A (phospho-acceptor) domain VC2369 PF00989 PAS fold VC2369 PF01627 Hpt domain VC2369 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC2370 PF00990 GGDEF domain VC2370 PF08448 PAS fold VC2370 PF13188 PAS domain VC2371 PF04055 Radical SAM superfamily VC2371 PF16199 VC2371 VC2373 PF00310 Glutamine amidotransferases class-II VC2373 PF01493 GXGXG motif VC2373 PF01645 Conserved region in glutamate synthase VC2373 PF04898 Glutamate synthase central domain VC2374 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC2374 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VC2376 PF00310 Glutamine amidotransferases class-II VC2376 PF01493 GXGXG motif VC2376 PF01645 Conserved region in glutamate synthase VC2376 PF04898 Glutamate synthase central domain VC2377 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC2377 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VC2378 PF07386 VC2378 VC2379 PF01048 Phosphorylase superfamily VC2380 PF03186 VC2380 VC2381 PF01497 Periplasmic binding protein VC2382 PF03458 VC2382 VC2383 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC2383 PF03466 LysR substrate binding domain VC2384 PF01925 VC2384 VC2385 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VC2386 PF13304 AAA domain VC2389 PF02142 MGS-like domain VC2389 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VC2389 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VC2390 PF00117 Glutamine amidotransferase class-I VC2390 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VC2391 PF01113 Dihydrodipicolinate reductase, N-terminus VC2391 PF05173 Dihydrodipicolinate reductase, C-terminus VC2392 PF00293 NUDIX domain VC2394 PF01043 SecA preprotein cross-linking domain VC2394 PF02810 SEC-C motif VC2394 PF07516 SecA Wing and Scaffold domain VC2394 PF07517 SecA DEAD-like domain VC2395 PF05258 VC2395 VC2396 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VC2397 PF00091 Tubulin/FtsZ family, GTPase domain VC2397 PF12327 FtsZ family, C-terminal domain VC2398 PF02491 SHS2 domain inserted in FTSA VC2398 PF14450 Cell division protein FtsA VC2399 PF03799 Cell division protein FtsQ VC2399 PF08478 POTRA domain, FtsQ-type VC2400 PF01225 Mur ligase family, catalytic domain VC2400 PF02875 Mur ligase family, glutamate ligase domain VC2400 PF08245 Mur ligase middle domain VC2401 PF03033 Glycosyltransferase family 28 N-terminal domain VC2401 PF04101 Glycosyltransferase family 28 C-terminal domain VC2402 PF01098 VC2402 VC2403 PF02875 Mur ligase family, glutamate ligase domain VC2403 PF08245 Mur ligase middle domain VC2404 PF00953 Glycosyl transferase family 4 VC2404 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VC2405 PF01225 Mur ligase family, catalytic domain VC2405 PF02875 Mur ligase family, glutamate ligase domain VC2405 PF08245 Mur ligase middle domain VC2406 PF01225 Mur ligase family, catalytic domain VC2406 PF02875 Mur ligase family, glutamate ligase domain VC2406 PF08245 Mur ligase middle domain VC2407 PF00905 Penicillin binding protein transpeptidase domain VC2407 PF03717 Penicillin-binding Protein dimerisation domain VC2408 PF04999 VC2408 VC2409 PF01795 MraW methylase family VC2412 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VC2412 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC2413 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VC2413 PF00364 Biotin-requiring enzyme VC2413 PF02817 e3 binding domain VC2414 PF00456 Transketolase, thiamine diphosphate binding domain VC2415 PF00392 Bacterial regulatory proteins, gntR family VC2415 PF07729 FCD domain VC2416 PF00149 Calcineurin-like phosphoesterase VC2416 PF02872 5'-nucleotidase, C-terminal domain VC2417 PF01368 DHH family VC2417 PF02272 DHHA1 domain VC2418 PF10411 Disulfide bond isomerase protein N-terminus VC2418 PF13098 Thioredoxin-like domain VC2419 PF00589 Phage integrase family VC2419 PF02899 Phage integrase, N-terminal SAM-like domain VC2420 PF00258 Flavodoxin VC2421 PF01510 N-acetylmuramoyl-L-alanine amidase VC2422 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VC2422 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VC2423 PF00114 Pilin (bacterial filament) VC2423 PF13633 Prokaryotic N-terminal methylation site VC2424 PF00437 Type II/IV secretion system protein VC2424 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VC2425 PF00482 Type II secretion system (T2SS), protein F VC2426 PF01478 Type IV leader peptidase family VC2426 PF06750 VC2426 VC2427 PF01121 Dephospho-CoA kinase VC2428 PF07072 Protein of unknown function (DUF1342) VC2429 PF03884 Domain of unknown function (DUF329) VC2430 PF00521 DNA gyrase/topoisomerase IV, subunit A VC2430 PF03989 DNA gyrase C-terminal domain, beta-propeller VC2431 PF00204 DNA gyrase B VC2431 PF00986 DNA gyrase B subunit, carboxyl terminus VC2431 PF01751 Toprim domain VC2431 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC2432 PF05728 Uncharacterised protein family (UPF0227) VC2433 PF00149 Calcineurin-like phosphoesterase VC2434 PF06853 VC2434 VC2435 PF00293 NUDIX domain VC2436 PF02321 Outer membrane efflux protein VC2438 PF03710 Glutamate-ammonia ligase adenylyltransferase VC2438 PF08335 GlnD PII-uridylyltransferase VC2439 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VC2439 PF00672 HAMP domain VC2440 PF01928 CYTH domain VC2440 PF05235 CHAD domain VC2441 PF01865 Protein of unknown function DUF47 VC2442 PF01384 VC2442 VC2443 PF08239 Bacterial SH3 domain VC2444 PF16537 VC2444 VC2445 PF01471 Putative peptidoglycan binding domain VC2445 PF13401 AAA domain VC2446 PF01743 Poly A polymerase head domain VC2446 PF01966 HD domain VC2446 PF12627 Probable RNA and SrmB- binding site of polymerase A VC2447 PF00113 Enolase, C-terminal TIM barrel domain VC2447 PF03952 Enolase, N-terminal domain VC2448 PF00117 Glutamine amidotransferase class-I VC2448 PF06418 CTP synthase N-terminus VC2450 PF03819 MazG nucleotide pyrophosphohydrolase domain VC2451 PF02824 TGS domain VC2451 PF04607 Region found in RelA / SpoT proteins VC2451 PF13291 ACT domain VC2451 PF13328 HD domain VC2452 PF01938 TRAM domain VC2452 PF05958 tRNA (Uracil-5-)-methyltransferase VC2453 PF00072 Response regulator receiver domain VC2453 PF00512 His Kinase A (phospho-acceptor) domain VC2453 PF00672 HAMP domain VC2453 PF01627 Hpt domain VC2453 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC2453 PF09984 VC2453 VC2454 PF00672 HAMP domain VC2454 PF00990 GGDEF domain VC2457 PF01648 4'-phosphopantetheinyl transferase superfamily VC2458 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VC2459 PF02565 Recombination protein O C terminal VC2459 PF11967 Recombination protein O N terminal VC2460 PF01926 50S ribosome-binding GTPase VC2460 PF07650 KH domain VC2461 PF00035 Double-stranded RNA binding motif VC2461 PF14622 Ribonuclease-III-like VC2462 PF00717 Peptidase S24-like VC2462 PF10502 Signal peptidase, peptidase S26 VC2463 PF00009 Elongation factor Tu GTP binding domain VC2463 PF00679 Elongation factor G C-terminus VC2463 PF03144 Elongation factor Tu domain 2 VC2463 PF06421 GTP-binding protein LepA C-terminus VC2464 PF04246 VC2464 VC2465 PF03888 MucB/RseB family VC2465 PF17188 VC2465 VC2466 PF03872 Anti sigma-E protein RseA, N-terminal domain VC2466 PF03873 Anti sigma-E protein RseA, C-terminal domain VC2467 PF04542 Sigma-70 region 2 VC2467 PF08281 Sigma-70, region 4 VC2469 PF00890 FAD binding domain VC2469 PF02910 Fumarate reductase flavoprotein C-term VC2471 PF03937 Flavinator of succinate dehydrogenase VC2472 PF01571 Aminomethyltransferase folate-binding domain VC2473 PF06526 Protein of unknown function (DUF1107) VC2474 PF01494 FAD binding domain VC2475 PF01494 FAD binding domain VC2478 PF05164 Cell division protein ZapA VC2479 PF01812 5-formyltetrahydrofolate cyclo-ligase family VC2480 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VC2481 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VC2481 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VC2482 PF10369 Small subunit of acetolactate synthase VC2482 PF13710 ACT domain VC2483 PF00205 Thiamine pyrophosphate enzyme, central domain VC2483 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VC2483 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VC2484 PF00501 AMP-binding enzyme VC2485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC2485 PF03466 LysR substrate binding domain VC2487 PF13528 Glycosyl transferase family 1 VC2488 PF01569 PAP2 superfamily VC2489 PF00440 Bacterial regulatory proteins, tetR family VC2489 PF14514 Transcriptional regulator, TetR, C-terminal VC2490 PF00682 HMGL-like VC2490 PF08502 LeuA allosteric (dimerisation) domain VC2491 PF00180 Isocitrate/isopropylmalate dehydrogenase VC2492 PF00330 Aconitase family (aconitate hydratase) VC2493 PF00694 Aconitase C-terminal domain VC2494 PF04784 VC2494 VC2497 PF01966 HD domain VC2497 PF11871 VC2497 VC2498 PF06271 VC2498 VC2499 PF03739 VC2499 VC2500 PF03739 VC2500 VC2501 PF00883 Cytosol aminopeptidase family, catalytic domain VC2501 PF02789 Cytosol aminopeptidase family, N-terminal domain VC2502 PF04364 DNA polymerase III chi subunit, HolC VC2503 PF00133 tRNA synthetases class I (I, L, M and V) VC2503 PF08264 Anticodon-binding domain of tRNA VC2503 PF10458 Valyl tRNA synthetase tRNA binding arm VC2504 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VC2504 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VC2505 PF00849 RNA pseudouridylate synthase VC2506 PF00176 SNF2 family N-terminal domain VC2506 PF00271 Helicase conserved C-terminal domain VC2506 PF12137 RNA polymerase recycling family C-terminal VC2507 PF02562 PhoH-like protein VC2507 PF13638 PIN domain VC2508 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VC2508 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VC2510 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VC2510 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VC2511 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VC2511 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VC2512 PF01042 Endoribonuclease L-PSP VC2513 PF01553 Acyltransferase VC2514 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VC2515 PF01722 BolA-like protein VC2516 PF13466 STAS domain VC2517 PF05494 Toluene tolerance, Ttg2 VC2518 PF02470 VC2518 VC2519 PF02405 VC2519 VC2520 PF00005 ABC transporter VC2522 PF01699 Sodium/calcium exchanger protein VC2523 PF00571 CBS domain VC2523 PF01380 SIS domain VC2524 PF08282 haloacid dehalogenase-like hydrolase VC2525 PF06835 Lipopolysaccharide-assembly, LptC-related VC2527 PF03968 OstA-like protein VC2528 PF00005 ABC transporter VC2528 PF12399 Branched-chain amino acid ATP-binding cassette transporter VC2529 PF00309 VC2529 VC2529 PF04552 Sigma-54, DNA binding domain VC2529 PF04963 Sigma-54 factor, core binding domain VC2530 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VC2531 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VC2532 PF03668 VC2532 VC2533 PF00381 PTS HPr component phosphorylation site VC2534 PF00571 CBS domain VC2534 PF01769 Divalent cation transporter VC2534 PF03448 MgtE intracellular N domain VC2535 PF01523 Putative modulator of DNA gyrase VC2536 PF04751 Protein of unknown function (DUF615) VC2537 PF00005 ABC transporter VC2538 PF00528 Binding-protein-dependent transport system inner membrane component VC2539 PF13343 Bacterial extracellular solute-binding protein VC2541 PF02441 Flavoprotein VC2542 PF01225 Mur ligase family, catalytic domain VC2542 PF02875 Mur ligase family, glutamate ligase domain VC2542 PF08245 Mur ligase middle domain VC2544 PF00316 Fructose-1-6-bisphosphatase VC2545 PF00719 Inorganic pyrophosphatase VC2546 PF06094 AIG2-like family VC2547 PF04357 VC2547 VC2548 PF01103 Surface antigen VC2549 PF01625 Peptide methionine sulfoxide reductase VC2550 PF09695 VC2550 VC2551 PF10795 VC2551 VC2552 PF10986 VC2552 VC2553 PF00005 ABC transporter VC2554 PF02687 VC2554 VC2554 PF12704 MacB-like periplasmic core domain VC2555 PF11736 Protein of unknown function (DUF3299) VC2558 PF01583 Adenylylsulphate kinase VC2559 PF00009 Elongation factor Tu GTP binding domain VC2560 PF01507 Phosphoadenosine phosphosulfate reductase family VC2561 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VC2562 PF00149 Calcineurin-like phosphoesterase VC2562 PF02872 5'-nucleotidase, C-terminal domain VC2564 PF00270 DEAD/DEAH box helicase VC2564 PF00271 Helicase conserved C-terminal domain VC2564 PF03880 DbpA RNA binding domain VC2565 PF13673 Acetyltransferase (GNAT) domain VC2566 PF00892 EamA-like transporter family VC2567 PF04225 Opacity-associated protein A LysM-like domain VC2567 PF08525 VC2567 VC2568 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VC2568 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VC2569 PF11075 VC2569 VC2570 PF01196 Ribosomal protein L17 VC2571 PF01000 RNA polymerase Rpb3/RpoA insert domain VC2571 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VC2571 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VC2572 PF00163 Ribosomal protein S4/S9 N-terminal domain VC2572 PF01479 S4 domain VC2573 PF00411 Ribosomal protein S11 VC2574 PF00416 Ribosomal protein S13/S18 VC2575 PF00444 Ribosomal protein L36 VC2576 PF00344 SecY translocase VC2577 PF00828 Ribosomal protein L18e/L15 VC2578 PF00327 Ribosomal protein L30p/L7e VC2579 PF00333 Ribosomal protein S5, N-terminal domain VC2579 PF03719 Ribosomal protein S5, C-terminal domain VC2580 PF00861 Ribosomal L18p/L5e family VC2581 PF00347 Ribosomal protein L6 VC2582 PF00410 Ribosomal protein S8 VC2583 PF00253 Ribosomal protein S14p/S29e VC2584 PF00281 Ribosomal protein L5 VC2584 PF00673 ribosomal L5P family C-terminus VC2585 PF00467 KOW motif VC2585 PF17136 VC2585 VC2586 PF00238 Ribosomal protein L14p/L23e VC2587 PF00366 Ribosomal protein S17 VC2588 PF00831 Ribosomal L29 protein VC2589 PF00252 Ribosomal protein L16p/L10e VC2590 PF00189 Ribosomal protein S3, C-terminal domain VC2590 PF07650 KH domain VC2591 PF00237 Ribosomal protein L22p/L17e VC2592 PF00203 Ribosomal protein S19 VC2593 PF00181 Ribosomal Proteins L2, RNA binding domain VC2593 PF03947 Ribosomal Proteins L2, C-terminal domain VC2594 PF00276 Ribosomal protein L23 VC2595 PF00573 Ribosomal protein L4/L1 family VC2596 PF00297 Ribosomal protein L3 VC2597 PF00338 Ribosomal protein S10p/S20e VC2598 PF00588 SpoU rRNA Methylase family VC2598 PF08032 RNA 2'-O ribose methyltransferase substrate binding VC2599 PF00575 S1 RNA binding domain VC2599 PF00773 RNB domain VC2599 PF08206 Ribonuclease B OB domain VC2599 PF08461 Ribonuclease R winged-helix domain VC2600 PF00884 Sulfatase VC2600 PF11893 VC2600 VC2601 PF08238 Sel1 repeat VC2602 PF00709 Adenylosuccinate synthetase VC2603 PF01112 Asparaginase VC2604 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VC2605 PF09526 VC2605 VC2606 PF00999 Sodium/hydrogen exchanger family VC2606 PF02254 TrkA-N domain VC2607 PF02525 Flavodoxin-like fold VC2608 PF00005 ABC transporter VC2608 PF09496 Cenp-O kinetochore centromere component VC2608 PF12848 ABC transporter VC2609 PF09523 VC2609 VC2610 PF00561 alpha/beta hydrolase fold VC2612 PF06794 Uncharacterised protein family (UPF0270) VC2613 PF00485 Phosphoribulokinase / Uridine kinase family VC2614 PF00027 Cyclic nucleotide-binding domain VC2614 PF00325 Bacterial regulatory proteins, crp family VC2615 PF07063 Domain of unknown function (DUF1338) VC2616 PF00171 Aldehyde dehydrogenase family VC2617 PF04958 Arginine N-succinyltransferase beta subunit VC2618 PF00202 Aminotransferase class-III VC2619 PF00117 Glutamine amidotransferase class-I VC2620 PF00919 Uncharacterized protein family UPF0004 VC2620 PF04055 Radical SAM superfamily VC2621 PF00932 Lamin Tail Domain VC2622 PF00497 Bacterial extracellular solute-binding proteins, family 3 VC2623 PF00579 tRNA synthetases class I (W and Y) VC2624 PF13419 Haloacid dehalogenase-like hydrolase VC2625 PF00834 Ribulose-phosphate 3 epimerase family VC2626 PF02086 D12 class N6 adenine-specific DNA methyltransferase VC2627 PF05036 Sporulation related domain VC2627 PF13401 AAA domain VC2628 PF01761 3-dehydroquinate synthase VC2629 PF01202 Shikimate kinase VC2630 PF00263 VC2630 VC2630 PF03958 Bacterial type II/III secretion system short domain VC2631 PF04351 Pilus assembly protein, PilP VC2632 PF04350 Pilus assembly protein, PilO VC2633 PF05137 VC2633 VC2634 PF11104 Type IV pilus assembly protein PilM; VC2635 PF00905 Penicillin binding protein transpeptidase domain VC2635 PF00912 Transglycosylase VC2635 PF17092 VC2635 VC2636 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC2636 PF03466 LysR substrate binding domain VC2637 PF00462 Glutaredoxin VC2637 PF08534 Redoxin VC2638 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VC2638 PF07992 Pyridine nucleotide-disulphide oxidoreductase VC2640 PF12292 VC2640 VC2641 PF00206 Lyase VC2641 PF14698 Argininosuccinate lyase C-terminal VC2642 PF00764 Arginosuccinate synthase VC2643 PF00696 Amino acid kinase family VC2644 PF01118 Semialdehyde dehydrogenase, NAD binding domain VC2644 PF02774 Semialdehyde dehydrogenase, dimerisation domain VC2645 PF01546 Peptidase family M20/M25/M40 VC2645 PF07687 Peptidase dimerisation domain VC2646 PF00311 Phosphoenolpyruvate carboxylase VC2647 PF03551 Transcriptional regulator PadR-like family VC2647 PF10400 Virulence activator alpha C-term VC2649 PF00132 Bacterial transferase hexapeptide (six repeats) VC2649 PF06426 Serine acetyltransferase, N-terminal VC2651 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VC2651 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VC2653 PF02556 Preprotein translocase subunit SecB VC2654 PF00581 Rhodanese-like domain VC2655 PF00152 tRNA synthetases class II (D, K and N) VC2656 PF00890 FAD binding domain VC2656 PF02910 Fumarate reductase flavoprotein C-term VC2657 PF13085 2Fe-2S iron-sulfur cluster binding domain VC2657 PF13183 4Fe-4S dicluster domain VC2658 PF02300 Fumarate reductase subunit C VC2659 PF02313 Fumarate reductase subunit D VC2660 PF01132 Elongation factor P (EF-P) OB domain VC2660 PF08207 Elongation factor P (EF-P) KOW-like domain VC2660 PF09285 Elongation factor P, C-terminal VC2661 PF04055 Radical SAM superfamily VC2661 PF13353 4Fe-4S single cluster domain VC2664 PF00118 TCP-1/cpn60 chaperonin family VC2665 PF00166 Chaperonin 10 Kd subunit VC2666 PF13412 Winged helix-turn-helix DNA-binding VC2667 PF11333 VC2667 VC2668 PF05656 VC2668 VC2669 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase VC2670 PF00121 Triosephosphate isomerase VC2671 PF01554 MatE VC2672 PF03737 Demethylmenaquinone methyltransferase VC2673 PF01040 UbiA prenyltransferase family VC2674 PF00004 ATPase family associated with various cellular activities (AAA) VC2674 PF07724 AAA domain (Cdc48 subfamily) VC2674 PF10431 C-terminal, D2-small domain, of ClpB protein VC2675 PF00227 Proteasome subunit VC2676 PF05036 Sporulation related domain VC2677 PF00356 Bacterial regulatory proteins, lacI family VC2677 PF13377 Periplasmic binding protein-like domain VC2678 PF00270 DEAD/DEAH box helicase VC2678 PF00271 Helicase conserved C-terminal domain VC2679 PF01197 Ribosomal protein L31 VC2681 PF00390 Malic enzyme, N-terminal domain VC2681 PF03949 Malic enzyme, NAD binding domain VC2682 PF01340 Met Apo-repressor, MetJ VC2683 PF01053 Cys/Met metabolism PLP-dependent enzyme VC2684 PF00696 Amino acid kinase family VC2684 PF00742 Homoserine dehydrogenase VC2684 PF03447 Homoserine dehydrogenase, NAD binding domain VC2685 PF02219 Methylenetetrahydrofolate reductase VC2686 PF06005 Protein of unknown function (DUF904) VC2688 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VC2689 PF00365 Phosphofructokinase VC2690 PF01545 Cation efflux family VC2690 PF16916 VC2690 VC2691 PF07813 LTXXQ motif family protein VC2692 PF00072 Response regulator receiver domain VC2692 PF00486 Transcriptional regulatory protein, C terminal VC2693 PF00512 His Kinase A (phospho-acceptor) domain VC2693 PF00672 HAMP domain VC2693 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC2693 PF16527 VC2693 VC2694 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VC2694 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VC2695 PF00588 SpoU rRNA Methylase family VC2696 PF04186 VC2696 VC2697 PF00990 GGDEF domain VC2698 PF00206 Lyase VC2698 PF10415 Fumarase C C-terminus VC2699 PF03605 VC2699 VC2701 PF02683 VC2701 VC2701 PF11412 Disulphide bond corrector protein DsbC VC2701 PF13899 Thioredoxin-like VC2702 PF00072 Response regulator receiver domain VC2702 PF00196 Bacterial regulatory proteins, luxR family VC2703 PF00999 Sodium/hydrogen exchanger family VC2703 PF02080 TrkA-C domain VC2703 PF03471 Transporter associated domain VC2704 PF13937 VC2704 VC2705 PF00474 Sodium:solute symporter family VC2706 PF02592 VC2706 VC2708 PF00625 Guanylate kinase VC2709 PF01192 RNA polymerase Rpb6 VC2710 PF02824 TGS domain VC2710 PF04607 Region found in RelA / SpoT proteins VC2710 PF13291 ACT domain VC2710 PF13328 HD domain VC2711 PF00270 DEAD/DEAH box helicase VC2711 PF00271 Helicase conserved C-terminal domain VC2711 PF17191 VC2711 VC2712 PF00860 Permease family VC2713 PF00512 His Kinase A (phospho-acceptor) domain VC2713 PF00672 HAMP domain VC2713 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC2714 PF00072 Response regulator receiver domain VC2714 PF00486 Transcriptional regulatory protein, C terminal VC2715 PF01272 Transcription elongation factor, GreA/GreB, C-term VC2715 PF03449 Transcription elongation factor, N-terminal VC2716 PF00575 S1 RNA binding domain VC2716 PF09371 Tex-like protein N-terminal domain VC2716 PF12836 Helix-hairpin-helix motif VC2716 PF16921 VC2716 VC2718 PF00561 alpha/beta hydrolase fold VC2719 PF00156 Phosphoribosyl transferase domain VC2720 PF01106 NifU-like domain VC2720 PF01521 Iron-sulphur cluster biosynthesis VC2721 PF00293 NUDIX domain VC2722 PF00459 Inositol monophosphatase family VC2723 PF01203 VC2723 VC2724 PF04612 Type II secretion system (T2SS), protein M VC2725 PF05134 Type II secretion system (T2SS), protein L VC2725 PF12693 GspL periplasmic domain VC2726 PF03934 Type II secretion system (T2SS), protein K VC2727 PF11612 Type II secretion system (T2SS), protein J VC2727 PF13633 Prokaryotic N-terminal methylation site VC2728 PF02501 Type II secretion system (T2SS), protein I VC2728 PF13633 Prokaryotic N-terminal methylation site VC2729 PF12019 Type II transport protein GspH VC2730 PF08334 Type II secretion system (T2SS), protein G VC2730 PF13544 VC2730 VC2731 PF00482 Type II secretion system (T2SS), protein F VC2732 PF00437 Type II/IV secretion system protein VC2734 PF11356 Type IV pilus biogenesis VC2735 PF01479 S4 domain VC2736 PF01430 Hsp33 protein VC2738 PF01293 Phosphoenolpyruvate carboxykinase VC2739 PF05170 VC2739 VC2740 PF09500 Putative thioesterase (yiiD_Cterm) VC2740 PF13673 Acetyltransferase (GNAT) domain VC2741 PF02580 D-Tyr-tRNA(Tyr) deacylase VC2742 PF03631 VC2742 VC2743 PF13521 AAA domain VC2744 PF00009 Elongation factor Tu GTP binding domain VC2744 PF00679 Elongation factor G C-terminus VC2744 PF03144 Elongation factor Tu domain 2 VC2746 PF00120 Glutamine synthetase, catalytic domain VC2746 PF03951 Glutamine synthetase, beta-Grasp domain VC2747 PF13511 VC2747 VC2748 PF00512 His Kinase A (phospho-acceptor) domain VC2748 PF00989 PAS fold VC2748 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VC2749 PF00072 Response regulator receiver domain VC2749 PF00158 Sigma-54 interaction domain VC2749 PF02954 Bacterial regulatory protein, Fis family VC2750 PF00563 EAL domain VC2750 PF00672 HAMP domain VC2750 PF00990 GGDEF domain VC2750 PF02743 Cache domain VC2751 PF00962 Adenosine/AMP deaminase VC2755 PF12724 Flavodoxin domain VC2756 PF02386 Cation transport protein VC2757 PF01205 Uncharacterized protein family UPF0029 VC2757 PF09186 Domain of unknown function (DUF1949) VC2758 PF00378 Enoyl-CoA hydratase/isomerase family VC2758 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VC2758 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VC2759 PF00108 Thiolase, N-terminal domain VC2759 PF02803 Thiolase, C-terminal domain VC2760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VC2760 PF03466 LysR substrate binding domain VC2761 PF07690 Major Facilitator Superfamily VC2762 PF00132 Bacterial transferase hexapeptide (six repeats) VC2762 PF12804 MobA-like NTP transferase domain VC2763 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VC2763 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VC2764 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VC2764 PF02874 ATP synthase alpha/beta family, beta-barrel domain VC2765 PF00231 ATP synthase VC2766 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VC2766 PF00306 ATP synthase alpha/beta chain, C terminal domain VC2766 PF02874 ATP synthase alpha/beta family, beta-barrel domain VC2767 PF00213 ATP synthase delta (OSCP) subunit VC2768 PF00430 ATP synthase B/B' CF(0) VC2769 PF00137 ATP synthase subunit C VC2770 PF00119 ATP synthase A chain VC2771 PF03899 VC2771 VC2772 PF02195 ParB-like nuclease domain VC2773 PF13614 AAA domain VC2774 PF02527 rRNA small subunit methyltransferase G VC2775 PF01134 Glucose inhibited division protein A VC2775 PF13932 GidA associated domain 3 VCA0009 PF00308 Bacterial dnaA protein VCA0034 PF01029 NusB family VCA0034 PF01189 NOL1/NOP2/sun family VCA0114 PF00990 GGDEF domain VCA0114 PF08495 VCA0114 VCA0114 PF10442 VCA0114 VCA0125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VCA0151 PF00005 ABC transporter VCA0151 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VCA0183 PF00271 Helicase conserved C-terminal domain VCA0183 PF09382 RQC domain VCA0183 PF16124 VCA0183 VCA0190 PF07715 TonB-dependent Receptor Plug Domain VCA0233 PF00501 AMP-binding enzyme VCA0236 PF04443 VCA0236 VCA0262 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VCA0264 PF01808 AICARFT/IMPCHase bienzyme VCA0279 PF00920 Dehydratase family VCA0298 PF00072 Response regulator receiver domain VCA0306 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VCA0344 PF04563 RNA polymerase beta subunit VCA0346 PF04565 RNA polymerase Rpb2, domain 3 VCA0346 PF10385 RNA polymerase beta subunit external 1 domain VCA0355 PF04998 RNA polymerase Rpb1, domain 5 VCA0355 PF05000 RNA polymerase Rpb1, domain 4 VCA0391 PF01715 IPP transferase VCA0414 PF03144 Elongation factor Tu domain 2 VCA0418 PF01281 Ribosomal protein L9, N-terminal domain VCA0423 PF01168 Alanine racemase, N-terminal domain VCA0432 PF12706 Beta-lactamase superfamily domain VCA0460 PF00809 Pterin binding enzyme VCA0472 PF04932 VCA0472 VCA0472 PF15864 VCA0472 VCA0492 PF07655 VCA0492 VCA0505 PF00482 Type II secretion system (T2SS), protein F VCA0507 PF13633 Prokaryotic N-terminal methylation site VCA0512 PF06723 MreB/Mbl protein VCA0519 PF13502 VCA0519 VCA0553 PF01168 Alanine racemase, N-terminal domain VCA0567 PF00593 TonB dependent receptor VCA0569 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VCA0580 PF03480 Bacterial extracellular solute-binding protein, family 7 VCA0604 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VCA0604 PF08447 PAS fold VCA0632 PF00291 Pyridoxal-phosphate dependent enzyme VCA0675 PF04348 LppC putative lipoprotein VCA0679 PF00916 VCA0679 VCA0704 PF17167 VCA0704 VCA0733 PF00004 ATPase family associated with various cellular activities (AAA) VCA0758 PF00563 EAL domain VCA0758 PF00990 GGDEF domain VCA0764 PF05525 VCA0764 VCA0767 PF00152 tRNA synthetases class II (D, K and N) VCA0767 PF01336 OB-fold nucleic acid binding domain VCA0776 PF00391 PEP-utilising enzyme, mobile domain VCA0776 PF05524 PEP-utilising enzyme, N-terminal VCA0777 PF02896 PEP-utilising enzyme, TIM barrel domain VCA0783 PF03023 VCA0783 VCA0785 PF00133 tRNA synthetases class I (I, L, M and V) VCA0832 PF13090 Polyphosphate kinase C-terminal domain VCA0901 PF04223 Citrate lyase, alpha subunit (CitF) VCA0925 PF12561 VCA0925 VCA0951 PF01478 Type IV leader peptidase family VCA0958 PF13322 VCA0958 VCA0973 PF01025 GrpE VCA0982 PF01464 Transglycosylase SLT domain VCA0984 PF02769 AIR synthase related protein, C-terminal domain VCA0994 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VCA0999 PF02568 Thiamine biosynthesis protein (ThiI) VCA1030 PF02350 UDP-N-acetylglucosamine 2-epimerase VCA1096 PF00854 POT family