VC0005 SM01234 VC0005 VC0008 SM00382 ATPases associated with a variety of cellular activities VC0010 SM00062 Bacterial periplasmic substrate-binding proteins VC0012 SM00382 ATPases associated with a variety of cellular activities VC0012 SM00760 Bacterial dnaA protein helix-turn-helix domain VC0013 SM00480 DNA polymerase III beta subunit VC0015 SM00387 Histidine kinase-like ATPases VC0015 SM00433 TopoisomeraseII VC0026 SM00829 Enoylreductase VC0032 SM00382 ATPases associated with a variety of cellular activities VC0033 SM00563 Phosphate acyltransferases VC0047 SM00257 Lysin motif VC0052 SM01001 AIR carboxylase VC0066 SM00876 Biotin and Thiamin Synthesis associated domain VC0071 SM00344 helix_turn_helix ASNC type VC0072 SM00052 Putative diguanylate phosphodiesterase VC0072 SM00091 PAS domain VC0072 SM00267 diguanylate cyclase VC0093 SM00563 Phosphate acyltransferases VC0098 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VC0098 SM00091 PAS domain VC0098 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC0100 SM00450 Rhodanese Homology Domain VC0105 SM01004 Delta-aminolevulinic acid dehydratase VC0108 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VC0108 SM00474 3'-5' exonuclease VC0108 SM00475 5'-3' exonuclease VC0108 SM00482 DNA polymerase A domain VC0116 SM00729 Elongator protein 3, MiaB family, Radical SAM VC0123 SM01219 VC0123 VC0130 SM00052 Putative diguanylate phosphodiesterase VC0130 SM00267 diguanylate cyclase VC0130 SM00897 FIST N domain VC0130 SM01204 VC0130 VC0131 SM01144 VC0131 VC0147 SM00382 ATPases associated with a variety of cellular activities VC0147 SM00962 SRP54-type protein, GTPase domain VC0147 SM00963 SRP54-type protein, helical bundle domain VC0148 SM00382 ATPases associated with a variety of cellular activities VC0159 SM00360 RNA recognition motif VC0170 SM00382 ATPases associated with a variety of cellular activities VC0176 SM00530 Helix-turn-helix XRE-family like proteins VC0192 SM00342 helix_turn_helix, arabinose operon control protein VC0196 SM00341 Helicase and RNase D C-terminal VC0196 SM00487 DEAD-like helicases superfamily VC0196 SM00490 helicase superfamily c-terminal domain VC0196 SM00956 VC0196 VC0199 SM00382 ATPases associated with a variety of cellular activities VC0201 SM00382 ATPases associated with a variety of cellular activities VC0216 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC0216 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC0216 SM01049 VC0216 VC0221 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VC0221 SM01232 VC0221 VC0247 SM00382 ATPases associated with a variety of cellular activities VC0264 SM00849 Metallo-beta-lactamase superfamily VC0264 SM01027 Beta-Casp domain VC0266 SM00986 Uracil DNA glycosylase superfamily VC0266 SM00987 UreE urease accessory protein, C-terminal domain VC0273 SM00411 bacterial (prokaryotic) histone like domain VC0275 SM01209 VC0275 VC0275 SM01210 VC0275 VC0276 SM00798 AICARFT/IMPCHase bienzyme VC0276 SM00851 MGS-like domain VC0277 SM00422 helix_turn_helix, mercury resistance VC0278 SM00862 Transcriptional regulatory protein, C terminal VC0282 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC0282 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC0282 SM01049 VC0282 VC0289 SM00354 helix_turn _helix lactose operon repressor VC0295 SM00878 Biotin carboxylase C-terminal domain VC0299 SM00479 VC0299 VC0303 SM00387 Histidine kinase-like ATPases VC0303 SM00388 His Kinase A (phosphoacceptor) domain VC0303 SM00448 cheY-homologous receiver domain VC0305 SM00487 DEAD-like helicases superfamily VC0305 SM00490 helicase superfamily c-terminal domain VC0307 SM00357 Cold shock protein domain VC0307 SM00382 ATPases associated with a variety of cellular activities VC0307 SM00959 Rho termination factor, N-terminal domain VC0315 SM00155 Phospholipase D. Active site motifs. VC0323 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VC0323 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VC0324 SM00649 Ribosomal protein L11/L12 VC0329 SM00663 RNA polymerase I subunit A N-terminus VC0341 SM00479 VC0341 VC0344 SM00257 Lysin motif VC0344 SM00646 VC0344 VC0345 SM00853 MutL C terminal dimerisation domain VC0345 SM01340 VC0345 VC0349 SM00244 prohibitin homologues VC0350 SM00244 prohibitin homologues VC0353 SM00320 WD40 repeats VC0361 SM00838 Elongation factor G C-terminus VC0361 SM00889 Elongation factor G, domain IV VC0371 SM00382 ATPases associated with a variety of cellular activities VC0372 SM01005 Alanine racemase, C-terminal domain VC0390 SM01018 B12 binding domain VC0396 SM00421 helix_turn_helix, Lux Regulon VC0398 SM00052 Putative diguanylate phosphodiesterase VC0398 SM00267 diguanylate cyclase VC0402 SM00965 Secretin and TonB N terminus short domain VC0404 SM00028 Tetratricopeptide repeats VC0405 SM00382 ATPases associated with a variety of cellular activities VC0419 SM00316 Ribosomal protein S1-like RNA-binding domain VC0443 SM00650 Ribosomal RNA adenine dimethylases VC0447 SM00271 DnaJ molecular chaperone homology domain VC0449 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC0449 SM01049 VC0449 VC0452 SM00478 endonuclease III VC0452 SM00525 VC0452 VC0455 SM00729 Elongator protein 3, MiaB family, Radical SAM VC0458 SM01152 VC0458 VC0462 SM00382 ATPases associated with a variety of cellular activities VC0464 SM00421 helix_turn_helix, Lux Regulon VC0465 SM00363 S4 RNA-binding domain VC0466 SM00732 Likely ribonuclease with RNase H fold. VC0471 SM00731 SprT homologues. VC0473 SM00861 Transketolase, pyrimidine binding domain VC0476 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC0486 SM00420 helix_turn_helix, Deoxyribose operon repressor VC0486 SM01134 VC0486 VC0489 SM00563 Phosphate acyltransferases VC0512 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC0513 SM00342 helix_turn_helix, arabinose operon control protein VC0514 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC0514 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC0523 SM01207 VC0523 VC0524 SM00905 Dihydroneopterin aldolase VC0533 SM00257 Lysin motif VC0535 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VC0535 SM00534 ATPase domain of DNA mismatch repair MUTS family VC0541 SM00382 ATPases associated with a variety of cellular activities VC0543 SM00382 ATPases associated with a variety of cellular activities VC0545 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VC0552 SM00829 Enoylreductase VC0558 SM01091 Transporter associated domain VC0560 SM00382 ATPases associated with a variety of cellular activities VC0560 SM00962 SRP54-type protein, GTPase domain VC0560 SM00963 SRP54-type protein, helical bundle domain VC0565 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VC0566 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VC0578 SM00749 bacterial OsmY and nodulation domain VC0586 SM00947 Carbonic anhydrase VC0589 SM00382 ATPases associated with a variety of cellular activities VC0601 SM00487 DEAD-like helicases superfamily VC0601 SM00490 helicase superfamily c-terminal domain VC0601 SM00847 Helicase associated domain (HA2) Add an annotation VC0606 SM00938 Nitrogen regulatory protein P-II VC0610 SM00382 ATPases associated with a variety of cellular activities VC0612 SM01068 Putative carbohydrate binding domain VC0616 SM00382 ATPases associated with a variety of cellular activities VC0617 SM00382 ATPases associated with a variety of cellular activities VC0622 SM00091 PAS domain VC0622 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC0622 SM00387 Histidine kinase-like ATPases VC0622 SM00388 His Kinase A (phosphoacceptor) domain VC0622 SM00448 cheY-homologous receiver domain VC0631 SM00363 S4 RNA-binding domain VC0635 SM01103 VC0635 VC0637 SM00382 ATPases associated with a variety of cellular activities VC0642 SM00316 Ribosomal protein S1-like RNA-binding domain VC0642 SM00322 K homology RNA-binding domain VC0646 SM01387 VC0646 VC0647 SM00316 Ribosomal protein S1-like RNA-binding domain VC0647 SM00322 K homology RNA-binding domain VC0648 SM00028 Tetratricopeptide repeats VC0649 SM00347 helix_turn_helix multiple antibiotic resistance protein VC0653 SM00052 Putative diguanylate phosphodiesterase VC0653 SM00091 PAS domain VC0653 SM00267 diguanylate cyclase VC0658 SM00052 Putative diguanylate phosphodiesterase VC0658 SM00267 diguanylate cyclase VC0660 SM00487 DEAD-like helicases superfamily VC0660 SM00490 helicase superfamily c-terminal domain VC0665 SM00382 ATPases associated with a variety of cellular activities VC0668 SM00927 DNA mismatch repair enzyme MutH VC0672 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VC0678 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VC0681 SM00904 Riboflavin kinase VC0693 SM00448 cheY-homologous receiver domain VC0693 SM00850 LytTr DNA-binding domain VC0696 SM00830 Chorismate mutase type II VC0698 SM00382 ATPases associated with a variety of cellular activities VC0703 SM00052 Putative diguanylate phosphodiesterase VC0703 SM00267 diguanylate cyclase VC0705 SM00830 Chorismate mutase type II VC0709 SM00363 S4 RNA-binding domain VC0711 SM00382 ATPases associated with a variety of cellular activities VC0711 SM01086 C-terminal, D2-small domain, of ClpB protein VC0719 SM00448 cheY-homologous receiver domain VC0719 SM00862 Transcriptional regulatory protein, C terminal VC0720 SM00091 PAS domain VC0720 SM00387 Histidine kinase-like ATPases VC0720 SM00388 His Kinase A (phosphoacceptor) domain VC0726 SM00382 ATPases associated with a variety of cellular activities VC0737 SM00116 Domain in cystathionine beta-synthase and other proteins. VC0742 SM01323 VC0742 VC0751 SM00271 DnaJ molecular chaperone homology domain VC0756 SM00562 VC0756 VC0758 SM00530 Helix-turn-helix XRE-family like proteins VC0762 SM00564 beta-propeller repeat VC0763 SM00382 ATPases associated with a variety of cellular activities VC0767 SM00116 Domain in cystathionine beta-synthase and other proteins. VC0767 SM01240 VC0767 VC0769 SM00495 Chitin-binding domain type 3 VC0779 SM00382 ATPases associated with a variety of cellular activities VC0783 SM00849 Metallo-beta-lactamase superfamily VC0790 SM00448 cheY-homologous receiver domain VC0791 SM00091 PAS domain VC0791 SM00387 Histidine kinase-like ATPases VC0796 SM00764 Citrate lyase ligase C-terminal domain VC0812 SM00487 DEAD-like helicases superfamily VC0812 SM00490 helicase superfamily c-terminal domain VC0814 SM00530 Helix-turn-helix XRE-family like proteins VC0820 SM00060 Fibronectin type 3 domain VC0825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC0826 SM00862 Transcriptional regulatory protein, C terminal VC0838 SM00342 helix_turn_helix, arabinose operon control protein VC0840 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC0840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC0845 SM01276 VC0845 VC0856 SM00271 DnaJ molecular chaperone homology domain VC0866 SM00062 Bacterial periplasmic substrate-binding proteins VC0869 SM01211 VC0869 VC0870 SM01321 VC0870 VC0889 SM00861 Transketolase, pyrimidine binding domain VC0894 SM00981 VC0894 VC0898 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VC0898 SM00475 5'-3' exonuclease VC0900 SM00267 diguanylate cyclase VC0901 SM00028 Tetratricopeptide repeats VC0907 SM00382 ATPases associated with a variety of cellular activities VC0907 SM00930 VC0907 VC0909 SM00354 helix_turn _helix lactose operon repressor VC0911 SM00642 Alpha-amylase domain VC0916 SM00226 Low molecular weight phosphatase family VC0918 SM00984 UDP binding domain VC0929 SM00710 Parallel beta-helix repeats VC0943 SM00729 Elongator protein 3, MiaB family, Radical SAM VC0947 SM00936 Penicillin-binding protein 5, C-terminal domain VC0959 SM00116 Domain in cystathionine beta-synthase and other proteins. VC0959 SM01091 Transporter associated domain VC0962 SM00729 Elongator protein 3, MiaB family, Radical SAM VC0970 SM00771 ZipA, C-terminal domain (FtsZ-binding) VC0971 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VC0971 SM00292 breast cancer carboxy-terminal domain VC0971 SM00532 Ligase N family VC0974 SM00422 helix_turn_helix, mercury resistance VC0976 SM00244 prohibitin homologues VC0984 SM00862 Transcriptional regulatory protein, C terminal VC0985 SM00387 Histidine kinase-like ATPases VC0990 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VC0990 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VC1006 SM00479 VC1006 VC1011 SM00478 endonuclease III VC1011 SM00525 VC1011 VC1013 SM00900 VC1013 VC1021 SM00382 ATPases associated with a variety of cellular activities VC1021 SM00448 cheY-homologous receiver domain VC1024 SM00729 Elongator protein 3, MiaB family, Radical SAM VC1025 SM00852 Probable molybdopterin binding domain VC1029 SM00267 diguanylate cyclase VC1031 SM00116 Domain in cystathionine beta-synthase and other proteins. VC1041 SM00226 Low molecular weight phosphatase family VC1050 SM00448 cheY-homologous receiver domain VC1054 SM00382 ATPases associated with a variety of cellular activities VC1056 SM00493 VC1056 VC1062 SM00344 helix_turn_helix ASNC type VC1067 SM00062 Bacterial periplasmic substrate-binding proteins VC1067 SM00267 diguanylate cyclase VC1068 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VC1069 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC1073 SM00495 Chitin-binding domain type 3 VC1073 SM00636 VC1073 VC1076 SM00342 helix_turn_helix, arabinose operon control protein VC1081 SM00448 cheY-homologous receiver domain VC1082 SM00448 cheY-homologous receiver domain VC1084 SM00387 Histidine kinase-like ATPases VC1084 SM00388 His Kinase A (phosphoacceptor) domain VC1085 SM00387 Histidine kinase-like ATPases VC1086 SM00052 Putative diguanylate phosphodiesterase VC1086 SM00448 cheY-homologous receiver domain VC1087 SM00448 cheY-homologous receiver domain VC1088 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1088 SM00387 Histidine kinase-like ATPases VC1094 SM00382 ATPases associated with a variety of cellular activities VC1095 SM00382 ATPases associated with a variety of cellular activities VC1103 SM00382 ATPases associated with a variety of cellular activities VC1104 SM00267 diguanylate cyclase VC1108 SM00382 ATPases associated with a variety of cellular activities VC1112 SM00729 Elongator protein 3, MiaB family, Radical SAM VC1112 SM00876 Biotin and Thiamin Synthesis associated domain VC1130 SM00528 Domain in histone-like proteins of HNS family VC1142 SM00357 Cold shock protein domain VC1144 SM00382 ATPases associated with a variety of cellular activities VC1144 SM01086 C-terminal, D2-small domain, of ClpB protein VC1155 SM00448 cheY-homologous receiver domain VC1177 SM00481 DNA polymerase alpha chain like domain VC1179 SM00363 S4 RNA-binding domain VC1180 SM00382 ATPases associated with a variety of cellular activities VC1181 SM00382 ATPases associated with a variety of cellular activities VC1185 SM00267 diguanylate cyclase VC1188 SM00919 Malic enzyme, NAD binding domain VC1188 SM01274 VC1188 VC1194 SM00271 DnaJ molecular chaperone homology domain VC1194 SM00671 Sel1-like repeats. VC1200 SM00020 Trypsin-like serine protease VC1206 SM00345 helix_turn_helix gluconate operon transcriptional repressor VC1206 SM00866 VC1206 VC1209 SM00841 Elongation factor P, C-terminal VC1209 SM01185 VC1209 VC1211 SM00052 Putative diguanylate phosphodiesterase VC1212 SM00486 DNA polymerase type-B family VC1213 SM00421 helix_turn_helix, Lux Regulon VC1213 SM00448 cheY-homologous receiver domain VC1214 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VC1214 SM00465 GIY-YIG type nucleases (URI domain) VC1216 SM00267 diguanylate cyclase VC1220 SM00873 B3/4 domain VC1220 SM00874 tRNA synthetase B5 domain VC1220 SM00896 Ferredoxin-fold anticodon binding domain VC1222 SM00411 bacterial (prokaryotic) histone like domain VC1240 SM00855 Phosphoglycerate mutase family VC1245 SM00382 ATPases associated with a variety of cellular activities VC1248 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1248 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1248 SM01049 VC1248 VC1252 SM00852 Probable molybdopterin binding domain VC1258 SM00434 DNA Topoisomerase IV VC1259 SM00450 Rhodanese Homology Domain VC1260 SM00342 helix_turn_helix, arabinose operon control protein VC1270 SM00849 Metallo-beta-lactamase superfamily VC1276 SM00387 Histidine kinase-like ATPases VC1276 SM01049 VC1276 VC1277 SM00421 helix_turn_helix, Lux Regulon VC1277 SM00448 cheY-homologous receiver domain VC1278 SM00347 helix_turn_helix multiple antibiotic resistance protein VC1280 SM00495 Chitin-binding domain type 3 VC1286 SM00354 helix_turn _helix lactose operon repressor VC1289 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1289 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1290 SM00479 VC1290 VC1291 SM00100 Cyclic nucleotide-monophosphate binding domain VC1291 SM00116 Domain in cystathionine beta-synthase and other proteins. VC1295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1295 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC1298 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1298 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1308 SM00091 PAS domain VC1308 SM00382 ATPases associated with a variety of cellular activities VC1312 SM01005 Alanine racemase, C-terminal domain VC1313 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1313 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1315 SM00387 Histidine kinase-like ATPases VC1316 SM00448 cheY-homologous receiver domain VC1319 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1319 SM00387 Histidine kinase-like ATPases VC1319 SM00388 His Kinase A (phosphoacceptor) domain VC1320 SM00448 cheY-homologous receiver domain VC1320 SM00862 Transcriptional regulatory protein, C terminal VC1327 SM00382 ATPases associated with a variety of cellular activities VC1335 SM00345 helix_turn_helix gluconate operon transcriptional repressor VC1335 SM00895 VC1335 VC1348 SM00448 cheY-homologous receiver domain VC1348 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC1349 SM00073 Histidine Phosphotransfer domain VC1349 SM00091 PAS domain VC1349 SM00387 Histidine kinase-like ATPases VC1349 SM00388 His Kinase A (phosphoacceptor) domain VC1349 SM00448 cheY-homologous receiver domain VC1353 SM00267 diguanylate cyclase VC1354 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VC1359 SM00382 ATPases associated with a variety of cellular activities VC1362 SM00062 Bacterial periplasmic substrate-binding proteins VC1367 SM00028 Tetratricopeptide repeats VC1367 SM00267 diguanylate cyclase VC1370 SM00267 diguanylate cyclase VC1372 SM00267 diguanylate cyclase VC1376 SM00267 diguanylate cyclase VC1376 SM01079 VC1376 VC1377 SM00479 VC1377 VC1382 SM00382 ATPases associated with a variety of cellular activities VC1382 SM00487 DEAD-like helicases superfamily VC1382 SM00490 helicase superfamily c-terminal domain VC1382 SM00847 Helicase associated domain (HA2) Add an annotation VC1394 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1397 SM00073 Histidine Phosphotransfer domain VC1397 SM00260 Two component signalling adaptor domain VC1397 SM00387 Histidine kinase-like ATPases VC1397 SM01231 VC1397 VC1398 SM00448 cheY-homologous receiver domain VC1399 SM00138 Methyltransferase, chemotaxis proteins VC1401 SM00448 cheY-homologous receiver domain VC1402 SM00260 Two component signalling adaptor domain VC1403 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1405 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1406 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VC1406 SM00091 PAS domain VC1406 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1407 SM00487 DEAD-like helicases superfamily VC1407 SM00490 helicase superfamily c-terminal domain VC1413 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1413 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1428 SM00382 ATPases associated with a variety of cellular activities VC1434 SM00100 Cyclic nucleotide-monophosphate binding domain VC1434 SM00419 helix_turn_helix, cAMP Regulatory protein VC1444 SM00897 FIST N domain VC1444 SM01204 VC1444 VC1445 SM00387 Histidine kinase-like ATPases VC1445 SM00388 His Kinase A (phosphoacceptor) domain VC1445 SM00448 cheY-homologous receiver domain VC1446 SM00382 ATPases associated with a variety of cellular activities VC1448 SM00382 ATPases associated with a variety of cellular activities VC1455 SM00530 Helix-turn-helix XRE-family like proteins VC1464 SM00530 Helix-turn-helix XRE-family like proteins VC1467 SM00530 Helix-turn-helix XRE-family like proteins VC1473 SM00530 Helix-turn-helix XRE-family like proteins VC1486 SM00382 ATPases associated with a variety of cellular activities VC1488 SM00981 VC1488 VC1496 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VC1496 SM00245 tail specific protease VC1497 SM00945 ProQ/FINO family VC1499 SM00382 ATPases associated with a variety of cellular activities VC1503 SM00316 Ribosomal protein S1-like RNA-binding domain VC1520 SM00382 ATPases associated with a variety of cellular activities VC1521 SM00387 Histidine kinase-like ATPases VC1521 SM00388 His Kinase A (phosphoacceptor) domain VC1522 SM00382 ATPases associated with a variety of cellular activities VC1522 SM00448 cheY-homologous receiver domain VC1525 SM00382 ATPases associated with a variety of cellular activities VC1527 SM00852 Probable molybdopterin binding domain VC1533 SM01144 VC1533 VC1552 SM00382 ATPases associated with a variety of cellular activities VC1553 SM00420 helix_turn_helix, Deoxyribose operon repressor VC1553 SM01134 VC1553 VC1557 SM00354 helix_turn _helix lactose operon repressor VC1562 SM00849 Metallo-beta-lactamase superfamily VC1568 SM00382 ATPases associated with a variety of cellular activities VC1576 SM01022 VC1576 VC1584 SM00248 ankyrin repeats VC1585 SM01060 VC1585 VC1591 SM00822 VC1591 VC1592 SM00052 Putative diguanylate phosphodiesterase VC1593 SM00267 diguanylate cyclase VC1599 SM00267 diguanylate cyclase VC1602 SM00260 Two component signalling adaptor domain VC1602 SM00448 cheY-homologous receiver domain VC1604 SM00448 cheY-homologous receiver domain VC1605 SM00387 Histidine kinase-like ATPases VC1612 SM00028 Tetratricopeptide repeats VC1612 SM00386 HAT (Half-A-TPR) repeats VC1630 SM00382 ATPases associated with a variety of cellular activities VC1635 SM00363 S4 RNA-binding domain VC1636 SM00487 DEAD-like helicases superfamily VC1636 SM00490 helicase superfamily c-terminal domain VC1638 SM00448 cheY-homologous receiver domain VC1638 SM00862 Transcriptional regulatory protein, C terminal VC1639 SM00387 Histidine kinase-like ATPases VC1641 SM00052 Putative diguanylate phosphodiesterase VC1643 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1643 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1649 SM00020 Trypsin-like serine protease VC1651 SM00448 cheY-homologous receiver domain VC1652 SM00052 Putative diguanylate phosphodiesterase VC1652 SM00421 helix_turn_helix, Lux Regulon VC1652 SM00448 cheY-homologous receiver domain VC1653 SM00062 Bacterial periplasmic substrate-binding proteins VC1653 SM00073 Histidine Phosphotransfer domain VC1653 SM00387 Histidine kinase-like ATPases VC1653 SM00388 His Kinase A (phosphoacceptor) domain VC1653 SM00448 cheY-homologous receiver domain VC1653 SM00918 Ligated ion channel L-glutamate- and glycine-binding site VC1655 SM00116 Domain in cystathionine beta-synthase and other proteins. VC1660a SM00382 ATPases associated with a variety of cellular activities VC1666 SM00382 ATPases associated with a variety of cellular activities VC1670 SM00155 Phospholipase D. Active site motifs. VC1679 SM00382 ATPases associated with a variety of cellular activities VC1683 SM00382 ATPases associated with a variety of cellular activities VC1684 SM00382 ATPases associated with a variety of cellular activities VC1687 SM01131 VC1687 VC1710 SM00052 Putative diguanylate phosphodiesterase VC1710 SM00091 PAS domain VC1711 SM00729 Elongator protein 3, MiaB family, Radical SAM VC1713 SM00344 helix_turn_helix ASNC type VC1719 SM00448 cheY-homologous receiver domain VC1719 SM00862 Transcriptional regulatory protein, C terminal VC1721 SM00354 helix_turn _helix lactose operon repressor VC1730 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VC1730 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VC1730 SM00493 VC1730 VC1737 SM00316 Ribosomal protein S1-like RNA-binding domain VC1765 SM00487 DEAD-like helicases superfamily VC1776 SM01130 VC1776 VC1817 SM00382 ATPases associated with a variety of cellular activities VC1825 SM00342 helix_turn_helix, arabinose operon control protein VC1831 SM00387 Histidine kinase-like ATPases VC1831 SM00388 His Kinase A (phosphoacceptor) domain VC1831 SM00448 cheY-homologous receiver domain VC1845 SM00382 ATPases associated with a variety of cellular activities VC1846 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VC1848 SM00840 VC1848 VC1851 SM00052 Putative diguanylate phosphodiesterase VC1855 SM00491 VC1855 VC1859 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1859 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1863 SM00062 Bacterial periplasmic substrate-binding proteins VC1863 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VC1864 SM00382 ATPases associated with a variety of cellular activities VC1868 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1872 SM00763 PrkA AAA domain VC1878 SM00382 ATPases associated with a variety of cellular activities VC1879 SM00849 Metallo-beta-lactamase superfamily VC1883 SM00382 ATPases associated with a variety of cellular activities VC1886 SM00487 DEAD-like helicases superfamily VC1886 SM00490 helicase superfamily c-terminal domain VC1886 SM00982 VC1886 VC1886 SM01058 CarD-like/TRCF domain VC1898 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1898 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1900 SM00345 helix_turn_helix gluconate operon transcriptional repressor VC1903 SM00843 VC1903 VC1904 SM00344 helix_turn_helix ASNC type VC1905 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VC1905 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VC1911 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VC1912 SM00028 Tetratricopeptide repeats VC1914 SM00411 bacterial (prokaryotic) histone like domain VC1915 SM00316 Ribosomal protein S1-like RNA-binding domain VC1917 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VC1919 SM00411 bacterial (prokaryotic) histone like domain VC1920 SM00382 ATPases associated with a variety of cellular activities VC1920 SM00464 Found in ATP-dependent protease La (LON) VC1921 SM00382 ATPases associated with a variety of cellular activities VC1921 SM00994 ClpX C4-type zinc finger VC1921 SM01086 C-terminal, D2-small domain, of ClpB protein VC1925 SM00387 Histidine kinase-like ATPases VC1925 SM00388 His Kinase A (phosphoacceptor) domain VC1926 SM00382 ATPases associated with a variety of cellular activities VC1926 SM00448 cheY-homologous receiver domain VC1934 SM00052 Putative diguanylate phosphodiesterase VC1934 SM00267 diguanylate cyclase VC1937 SM00563 Phosphate acyltransferases VC1952 SM00495 Chitin-binding domain type 3 VC1952 SM00636 VC1952 VC1964 SM00978 VC1964 VC1966 SM00563 Phosphate acyltransferases VC1967 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC1967 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC1968 SM00530 Helix-turn-helix XRE-family like proteins VC1972 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VC1978 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC1979 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC1980 SM01144 VC1980 VC1984 SM00474 3'-5' exonuclease VC1990 SM00487 DEAD-like helicases superfamily VC1990 SM00491 VC1990 VC1995 SM00870 VC1995 VC2000 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VC2006 SM00260 Two component signalling adaptor domain VC2006 SM00448 cheY-homologous receiver domain VC2019 SM00825 Beta-ketoacyl synthase VC2021 SM00822 VC2021 VC2022 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VC2028 SM00363 S4 RNA-binding domain VC2030 SM00316 Ribosomal protein S1-like RNA-binding domain VC2036 SM00859 Semialdehyde dehydrogenase, NAD binding domain VC2038 SM00073 Histidine Phosphotransfer domain VC2043 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VC2043 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VC2043 SM00493 VC2043 VC2057 SM00382 ATPases associated with a variety of cellular activities VC2059 SM00260 Two component signalling adaptor domain VC2060 SM00260 Two component signalling adaptor domain VC2062 SM00448 cheY-homologous receiver domain VC2063 SM00073 Histidine Phosphotransfer domain VC2063 SM00260 Two component signalling adaptor domain VC2063 SM00387 Histidine kinase-like ATPases VC2063 SM01231 VC2063 VC2065 SM00448 cheY-homologous receiver domain VC2068 SM00382 ATPases associated with a variety of cellular activities VC2068 SM00962 SRP54-type protein, GTPase domain VC2070 SM00855 Phosphoglycerate mutase family VC2074 SM00836 DALR anticodon binding domain VC2074 SM01016 Arginyl tRNA synthetase N terminal dom VC2078 SM00899 VC2078 VC2080 SM00342 helix_turn_helix, arabinose operon control protein VC2082 SM00382 ATPases associated with a variety of cellular activities VC2084 SM00881 CoA binding domain VC2087 SM00861 Transketolase, pyrimidine binding domain VC2107 SM00859 Semialdehyde dehydrogenase, NAD binding domain VC2119 SM00463 Small MutS-related domain VC2130 SM00382 ATPases associated with a variety of cellular activities VC2135 SM00382 ATPases associated with a variety of cellular activities VC2135 SM00448 cheY-homologous receiver domain VC2136 SM00091 PAS domain VC2136 SM00387 Histidine kinase-like ATPases VC2136 SM00388 His Kinase A (phosphoacceptor) domain VC2137 SM00382 ATPases associated with a variety of cellular activities VC2157 SM01130 VC2157 VC2161 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC2161 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC2164 SM00028 Tetratricopeptide repeats VC2179 SM00937 VC2179 VC2183 SM01400 VC2183 VC2192 SM00047 Lysozyme subfamily 2 VC2201 SM00138 Methyltransferase, chemotaxis proteins VC2202 SM00260 Two component signalling adaptor domain VC2202 SM00448 cheY-homologous receiver domain VC2203 SM00858 VC2203 VC2217 SM01081 Putative carbohydrate binding domain VC2222 SM00463 Small MutS-related domain VC2223 SM00363 S4 RNA-binding domain VC2224 SM00267 diguanylate cyclase VC2233 SM00479 VC2233 VC2236 SM00849 Metallo-beta-lactamase superfamily VC2237 SM00257 Lysin motif VC2239 SM00938 Nitrogen regulatory protein P-II VC2242 SM00977 TilS substrate C-terminal domain VC2245 SM00481 DNA polymerase alpha chain like domain VC2251 SM00935 Outer membrane protein (OmpH-like) VC2253 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VC2262 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC2274 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VC2285 SM00267 diguanylate cyclase VC2293 SM00900 VC2293 VC2303 SM00464 Found in ATP-dependent protease La (LON) VC2312 SM00925 MltA specific insert domain VC2337 SM00354 helix_turn _helix lactose operon repressor VC2342 SM00838 Elongation factor G C-terminus VC2342 SM00889 Elongation factor G, domain IV VC2343 SM00382 ATPases associated with a variety of cellular activities VC2349 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VC2350 SM01133 VC2350 VC2359 SM00986 Uracil DNA glycosylase superfamily VC2359 SM00987 UreE urease accessory protein, C-terminal domain VC2360 SM00518 AP endonuclease family 2 VC2368 SM00448 cheY-homologous receiver domain VC2368 SM00862 Transcriptional regulatory protein, C terminal VC2369 SM00073 Histidine Phosphotransfer domain VC2369 SM00091 PAS domain VC2369 SM00387 Histidine kinase-like ATPases VC2369 SM00388 His Kinase A (phosphoacceptor) domain VC2369 SM00448 cheY-homologous receiver domain VC2370 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VC2370 SM00091 PAS domain VC2370 SM00267 diguanylate cyclase VC2371 SM00729 Elongator protein 3, MiaB family, Radical SAM VC2386 SM00382 ATPases associated with a variety of cellular activities VC2387 SM00507 HNH nucleases VC2389 SM00851 MGS-like domain VC2389 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VC2390 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VC2394 SM00957 SecA DEAD-like domain VC2394 SM00958 SecA preprotein cross-linking domain VC2397 SM00864 Tubulin/FtsZ family, GTPase domain VC2397 SM00865 Tubulin/FtsZ family, C-terminal domain VC2398 SM00842 Cell division protein FtsA VC2415 SM00345 helix_turn_helix gluconate operon transcriptional repressor VC2415 SM00895 VC2415 VC2421 SM00644 VC2421 VC2430 SM00434 DNA Topoisomerase IV VC2431 SM00387 Histidine kinase-like ATPases VC2431 SM00433 TopoisomeraseII VC2439 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VC2439 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC2440 SM00880 VC2440 VC2440 SM01118 VC2440 VC2443 SM00287 Bacterial SH3 domain homologues VC2445 SM00382 ATPases associated with a variety of cellular activities VC2447 SM01192 VC2447 VC2447 SM01193 VC2447 VC2451 SM00954 Region found in RelA / SpoT proteins VC2453 SM00073 Histidine Phosphotransfer domain VC2453 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC2453 SM00387 Histidine kinase-like ATPases VC2453 SM00388 His Kinase A (phosphoacceptor) domain VC2453 SM00448 cheY-homologous receiver domain VC2454 SM00267 diguanylate cyclase VC2461 SM00358 Double-stranded RNA binding motif VC2461 SM00535 Ribonuclease III family VC2488 SM00014 Acid phosphatase homologues VC2490 SM00917 LeuA allosteric (dimerisation) domain VC2491 SM01329 VC2491 VC2497 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC2506 SM00487 DEAD-like helicases superfamily VC2506 SM00490 helicase superfamily c-terminal domain VC2507 SM00670 Large family of predicted nucleotide-binding domains VC2513 SM00563 Phosphate acyltransferases VC2520 SM00382 ATPases associated with a variety of cellular activities VC2523 SM00116 Domain in cystathionine beta-synthase and other proteins. VC2528 SM00382 ATPases associated with a variety of cellular activities VC2534 SM00924 MgtE intracellular N domain VC2537 SM00382 ATPases associated with a variety of cellular activities VC2553 SM00382 ATPases associated with a variety of cellular activities VC2564 SM00487 DEAD-like helicases superfamily VC2564 SM00490 helicase superfamily c-terminal domain VC2571 SM00662 RNA polymerases D VC2572 SM00363 S4 RNA-binding domain VC2572 SM01390 VC2572 VC2585 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VC2586 SM01374 VC2586 VC2590 SM00322 K homology RNA-binding domain VC2593 SM01382 VC2593 VC2593 SM01383 VC2593 VC2597 SM01403 VC2597 VC2598 SM00967 RNA 2'-O ribose methyltransferase substrate binding VC2599 SM00316 Ribosomal protein S1-like RNA-binding domain VC2599 SM00357 Cold shock protein domain VC2599 SM00955 VC2599 VC2601 SM00671 Sel1-like repeats. VC2602 SM00788 Adenylosuccinate synthetase VC2608 SM00382 ATPases associated with a variety of cellular activities VC2614 SM00100 Cyclic nucleotide-monophosphate binding domain VC2614 SM00419 helix_turn_helix, cAMP Regulatory protein VC2615 SM01150 VC2615 VC2620 SM00729 Elongator protein 3, MiaB family, Radical SAM VC2630 SM00965 Secretin and TonB N terminus short domain VC2644 SM00859 Semialdehyde dehydrogenase, NAD binding domain VC2649 SM00971 Serine acetyltransferase, N-terminal VC2654 SM00450 Rhodanese Homology Domain VC2660 SM00841 Elongation factor P, C-terminal VC2660 SM01185 VC2660 VC2665 SM00883 Chaperonin 10 Kd subunit VC2674 SM00382 ATPases associated with a variety of cellular activities VC2674 SM01086 C-terminal, D2-small domain, of ClpB protein VC2677 SM00354 helix_turn _helix lactose operon repressor VC2678 SM00487 DEAD-like helicases superfamily VC2678 SM00490 helicase superfamily c-terminal domain VC2681 SM00919 Malic enzyme, NAD binding domain VC2681 SM01274 VC2681 VC2692 SM00448 cheY-homologous receiver domain VC2692 SM00862 Transcriptional regulatory protein, C terminal VC2693 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC2693 SM00387 Histidine kinase-like ATPases VC2693 SM00388 His Kinase A (phosphoacceptor) domain VC2697 SM00267 diguanylate cyclase VC2702 SM00421 helix_turn_helix, Lux Regulon VC2702 SM00448 cheY-homologous receiver domain VC2703 SM01091 Transporter associated domain VC2708 SM00072 Guanylate kinase homologues. VC2709 SM01409 VC2709 VC2710 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VC2710 SM00954 Region found in RelA / SpoT proteins VC2711 SM00487 DEAD-like helicases superfamily VC2711 SM00490 helicase superfamily c-terminal domain VC2713 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VC2713 SM00387 Histidine kinase-like ATPases VC2713 SM00388 His Kinase A (phosphoacceptor) domain VC2714 SM00448 cheY-homologous receiver domain VC2714 SM00862 Transcriptional regulatory protein, C terminal VC2716 SM00316 Ribosomal protein S1-like RNA-binding domain VC2716 SM00732 Likely ribonuclease with RNase H fold. VC2732 SM00382 ATPases associated with a variety of cellular activities VC2735 SM00363 S4 RNA-binding domain VC2746 SM01230 VC2746 VC2748 SM00091 PAS domain VC2748 SM00387 Histidine kinase-like ATPases VC2748 SM00388 His Kinase A (phosphoacceptor) domain VC2749 SM00382 ATPases associated with a variety of cellular activities VC2749 SM00448 cheY-homologous receiver domain VC2750 SM00052 Putative diguanylate phosphodiesterase VC2750 SM00267 diguanylate cyclase VC2764 SM00382 ATPases associated with a variety of cellular activities VC2772 SM00470 ParB-like nuclease domain VC2775 SM01228 VC2775 VCA0114 SM01204 VCA0114 VCA0151 SM00382 ATPases associated with a variety of cellular activities VCA0183 SM00490 helicase superfamily c-terminal domain VCA0183 SM00956 VCA0183 VCA0262 SM01209 VCA0262 VCA0264 SM00798 AICARFT/IMPCHase bienzyme VCA0604 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VCA0758 SM00267 diguanylate cyclase