locus-tag	class	description
HPY08_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
HPY08_RS00010	COG0592	DNA-directed DNA polymerase activity
HPY08_RS00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
HPY08_RS00020	COG0187	DNA topoisomerase II activity
HPY08_RS00030	COG0071	Belongs to the small heat shock protein (HSP20) family
HPY08_RS00035	COG3977	Valine--pyruvate aminotransferase
HPY08_RS00040	COG0751	glycine-tRNA ligase activity
HPY08_RS00045	COG0752	glycyl-tRNA synthetase alpha subunit
HPY08_RS00050	COG2119	membrane
HPY08_RS00060	COG0425	Belongs to the sulfur carrier protein TusA family
HPY08_RS00070	COG0604	alcohol dehydrogenase
HPY08_RS00080	COG0129	dihydroxy-acid dehydratase activity
HPY08_RS00085	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
HPY08_RS00100	COG0606	chelatase, subunit chli
HPY08_RS00105	COG0204	Acyl-transferase
HPY08_RS00110	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
HPY08_RS00115	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
HPY08_RS00125	COG3084	Protein conserved in bacteria
HPY08_RS00130	COG4326	sporulation control protein
HPY08_RS00135	COG1272	protein, Hemolysin III
HPY08_RS00145	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
HPY08_RS00150	COG0569	domain protein
HPY08_RS00155	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
HPY08_RS00155	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
HPY08_RS00160	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
HPY08_RS00165	COG0242	peptide deformylase activity
HPY08_RS00170	COG1652	LysM domain
HPY08_RS00175	COG0758	DNA mediated transformation
HPY08_RS00180	COG2922	Belongs to the Smg family
HPY08_RS00185	COG0551	DNA topoisomerase type I activity
HPY08_RS00190	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
HPY08_RS00195	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
HPY08_RS00200	COG0009	L-threonylcarbamoyladenylate synthase
HPY08_RS00205	COG0408	coproporphyrinogen oxidase activity
HPY08_RS00210	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
HPY08_RS00220	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
HPY08_RS00255	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
HPY08_RS00260	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
HPY08_RS00270	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
HPY08_RS00275	COG2104	thiamine diphosphate biosynthetic process
HPY08_RS00280	COG2022	thiamine diphosphate biosynthetic process
HPY08_RS00285	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
HPY08_RS00290	COG0006	proline dipeptidase activity
HPY08_RS00290	COG0006	proline dipeptidase activity
HPY08_RS00310	COG1522	sequence-specific DNA binding
HPY08_RS00315	COG5002	protein histidine kinase activity
HPY08_RS00315	COG5001	Diguanylate cyclase
HPY08_RS00335	COG0589	response to stress
HPY08_RS00340	COG1528	Iron-storage protein
HPY08_RS00350	COG2081	HI0933 family
HPY08_RS00360	COG1322	Protein conserved in bacteria
HPY08_RS00365	COG2226	methyltransferase
HPY08_RS00380	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
HPY08_RS00385	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
HPY08_RS00390	COG0805	protein transport
HPY08_RS00395	COG0534	Mate efflux family protein
HPY08_RS00405	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
HPY08_RS00410	COG2937	Belongs to the GPAT DAPAT family
HPY08_RS00415	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
HPY08_RS00420	COG3161	chorismate lyase activity
HPY08_RS00425	COG1580	Controls the rotational direction of flagella during chemotaxis
HPY08_RS00440	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
HPY08_RS00445	COG0084	hydrolase, TatD family'
HPY08_RS00460	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
HPY08_RS00460	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
HPY08_RS00480	COG3078	GTPase activator activity
HPY08_RS00495	COG3071	HemY protein
HPY08_RS00500	COG2959	enzyme of heme biosynthesis
HPY08_RS00505	COG1587	Uroporphyrinogen-III synthase
HPY08_RS00510	COG0181	hydroxymethylbilane synthase activity
HPY08_RS00520	COG1965	Belongs to the frataxin family
HPY08_RS00530	COG0019	diaminopimelate decarboxylase activity
HPY08_RS00535	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
HPY08_RS00545	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
HPY08_RS00550	COG1011	Hydrolase
HPY08_RS00555	COG3287	FIST C domain
HPY08_RS00555	COG2200	EAL domain
HPY08_RS00555	COG2199	diguanylate cyclase activity
HPY08_RS00570	COG0561	phosphatase activity
HPY08_RS00575	COG2267	carboxylic ester hydrolase activity
HPY08_RS00580	COG1280	lysine exporter protein (LysE YggA)
HPY08_RS00585	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
HPY08_RS00590	COG0783	Belongs to the Dps family
HPY08_RS00620	COG0742	ribosomal rna small subunit methyltransferase
HPY08_RS00625	COG0552	protein localization to endoplasmic reticulum
HPY08_RS00630	COG2884	Cell division ATP-binding protein ftsE
HPY08_RS00635	COG2177	Part of the ABC transporter FtsEX involved in
HPY08_RS00640	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
HPY08_RS00645	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
HPY08_RS00660	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
HPY08_RS00670	COG1404	Belongs to the peptidase S8 family
HPY08_RS00675	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
HPY08_RS00740	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
HPY08_RS00745	COG5001	Diguanylate cyclase
HPY08_RS00745	COG3300	MHYT domain
HPY08_RS00755	COG3852	Histidine kinase
HPY08_RS00765	COG0174	glutamine synthetase
HPY08_RS00785	COG1295	ribonuclease BN
HPY08_RS00790	COG1490	D-aminoacyl-tRNA deacylase activity
HPY08_RS00795	COG0456	acetyltransferase
HPY08_RS00805	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
HPY08_RS00810	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
HPY08_RS00815	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
HPY08_RS00820	COG3031	protein transport across the cell outer membrane
HPY08_RS00830	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
HPY08_RS00835	COG1459	type II secretion system
HPY08_RS00840	COG2165	general secretion pathway protein
HPY08_RS00845	COG2165	general secretion pathway protein
HPY08_RS00850	COG2165	general secretion pathway protein
HPY08_RS00855	COG4795	General secretion pathway protein
HPY08_RS00860	COG3156	type II secretion system protein K
HPY08_RS00865	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
HPY08_RS00870	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
HPY08_RS00880	COG1218	3'(2'),5'-bisphosphate nucleotidase
HPY08_RS00885	COG0494	nUDIX hydrolase
HPY08_RS00895	COG1040	competence protein
HPY08_RS00905	COG0596	Alpha beta hydrolase
HPY08_RS00915	COG2183	response to ionizing radiation
HPY08_RS00920	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
HPY08_RS00925	COG2199	diguanylate cyclase activity
HPY08_RS00930	COG0745	RESPONSE REGULATOR receiver
HPY08_RS00940	COG2233	PERMEase
HPY08_RS00945	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
HPY08_RS00950	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
HPY08_RS00955	COG1758	RNA polymerase activity
HPY08_RS00960	COG0194	GDP metabolic process
HPY08_RS00965	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
HPY08_RS00970	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
HPY08_RS00980	COG3263	regulation of cellular component size
HPY08_RS00990	COG4232	protein-disulfide reductase activity
HPY08_RS01000	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
HPY08_RS01005	COG1027	Aspartate ammonia-lyase
HPY08_RS01010	COG3706	GGDEF domain
HPY08_RS01015	COG3030	protein affecting phage T7 exclusion by the F plasmid
HPY08_RS01020	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
HPY08_RS01030	COG2205	protein histidine kinase activity
HPY08_RS01035	COG0745	RESPONSE REGULATOR receiver
HPY08_RS01045	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
HPY08_RS01050	COG0205	6-phosphofructokinase activity
HPY08_RS01055	COG1494	fructose-1,6-bisphosphatase
HPY08_RS01060	COG3074	FtsZ-dependent cytokinesis
HPY08_RS01065	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
HPY08_RS01070	COG0527	aspartate kinase activity
HPY08_RS01070	COG0460	homoserine dehydrogenase
HPY08_RS01075	COG0626	cystathionine gamma-synthase activity
HPY08_RS01080	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
HPY08_RS01085	COG0281	malic enzyme
HPY08_RS01090	COG0254	rRNA binding
HPY08_RS01095	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
HPY08_RS01100	COG1609	Transcriptional regulator
HPY08_RS01105	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
HPY08_RS01110	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
HPY08_RS01115	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
HPY08_RS01120	COG1575	Belongs to the MenA family. Type 1 subfamily
HPY08_RS01125	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
HPY08_RS01130	COG0534	Mate efflux family protein
HPY08_RS01135	COG0149	triose-phosphate isomerase activity
HPY08_RS01160	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
HPY08_RS01165	COG0459	protein refolding
HPY08_RS01175	COG1509	lysine 2,3-aminomutase activity
HPY08_RS01180	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
HPY08_RS01190	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
HPY08_RS01195	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
HPY08_RS01200	COG1053	succinate dehydrogenase
HPY08_RS01205	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
HPY08_RS01210	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
HPY08_RS01215	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
HPY08_RS01220	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
HPY08_RS01225	COG1045	serine acetyltransferase
HPY08_RS01235	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
HPY08_RS01240	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
HPY08_RS01245	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
HPY08_RS01250	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
HPY08_RS01255	COG0137	argininosuccinate synthase activity
HPY08_RS01260	COG0165	Argininosuccinate lyase
HPY08_RS01270	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
HPY08_RS01275	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
HPY08_RS01275	COG0678	peroxiredoxin activity
HPY08_RS01295	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
HPY08_RS01325	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
HPY08_RS01330	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
HPY08_RS01340	COG0338	D12 class N6 adenine-specific DNA methyltransferase
HPY08_RS01345	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
HPY08_RS01350	COG0546	phosphoglycolate phosphatase activity
HPY08_RS01355	COG0180	Tryptophanyl-tRNA synthetase
HPY08_RS01370	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
HPY08_RS01380	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
HPY08_RS01390	COG1012	belongs to the aldehyde dehydrogenase family
HPY08_RS01405	COG3954	Phosphoribulokinase
HPY08_RS01415	COG0429	hydrolase of the alpha beta-hydrolase fold
HPY08_RS01425	COG0488	(ABC) transporter
HPY08_RS01430	COG2249	NAD(P)H dehydrogenase (quinone) activity
HPY08_RS01445	COG1047	Peptidyl-prolyl cis-trans
HPY08_RS01455	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
HPY08_RS01460	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
HPY08_RS01465	COG3083	sulfuric ester hydrolase activity
HPY08_RS01470	COG0557	exoribonuclease II activity
HPY08_RS01475	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
HPY08_RS01480	COG0051	transcription antitermination factor activity, RNA binding
HPY08_RS01485	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
HPY08_RS01490	COG0088	Forms part of the polypeptide exit tunnel
HPY08_RS01495	COG0089	rRNA binding
HPY08_RS01500	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
HPY08_RS01505	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
HPY08_RS01510	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
HPY08_RS01515	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
HPY08_RS01520	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
HPY08_RS01525	COG0255	Belongs to the universal ribosomal protein uL29 family
HPY08_RS01530	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
HPY08_RS01535	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
HPY08_RS01540	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
HPY08_RS01545	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
HPY08_RS01550	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
HPY08_RS01555	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
HPY08_RS01560	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
HPY08_RS01565	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
HPY08_RS01570	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
HPY08_RS01575	COG1841	ribosomal large subunit assembly
HPY08_RS01585	COG0201	protein transport
HPY08_RS01590	COG0257	Belongs to the bacterial ribosomal protein bL36 family
HPY08_RS01595	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
HPY08_RS01600	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
HPY08_RS01605	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
HPY08_RS01610	COG0202	RNA polymerase activity
HPY08_RS01615	COG0203	ribosomal protein L17
HPY08_RS01625	COG0545	Peptidyl-prolyl cis-trans isomerase
HPY08_RS01630	COG3266	domain, Protein
HPY08_RS01630	COG3061	Opacity-associated protein A
HPY08_RS01635	COG0697	spore germination
HPY08_RS01640	COG2153	protein acetylation
HPY08_RS01645	COG0513	Belongs to the DEAD box helicase family
HPY08_RS01655	COG0737	Belongs to the 5'-nucleotidase family
HPY08_RS01660	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
HPY08_RS01660	COG1648	precorrin-2 dehydrogenase activity
HPY08_RS01665	COG0175	sulfate reduction
HPY08_RS01670	COG2895	sulfate adenylyltransferase (ATP) activity
HPY08_RS01675	COG0529	Catalyzes the synthesis of activated sulfate
HPY08_RS01695	COG1136	(ABC) transporter
HPY08_RS01710	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
HPY08_RS01715	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
HPY08_RS01720	COG0729	surface antigen
HPY08_RS01730	COG2105	PFAM AIG2 family protein
HPY08_RS01735	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
HPY08_RS01745	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
HPY08_RS01750	COG0163	prenyltransferase activity
HPY08_RS01760	COG1178	ABC-type Fe3 transport system permease component
HPY08_RS01765	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
HPY08_RS01770	COG3028	Belongs to the UPF0307 family
HPY08_RS01775	COG0312	modulator of DNA gyrase
HPY08_RS01780	COG2239	Acts as a magnesium transporter
HPY08_RS01785	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
HPY08_RS01790	COG1660	Displays ATPase and GTPase activities
HPY08_RS01795	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
HPY08_RS01800	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
HPY08_RS01810	COG1137	ATPase activity
HPY08_RS01815	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
HPY08_RS01830	COG0517	IMP dehydrogenase activity
HPY08_RS01830	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
HPY08_RS01840	COG1127	ABC transporter
HPY08_RS01845	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
HPY08_RS01850	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
HPY08_RS01855	COG2854	intermembrane phospholipid transfer
HPY08_RS01865	COG5007	Belongs to the BolA IbaG family
HPY08_RS01870	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
HPY08_RS01880	COG0251	oxidation-reduction process
HPY08_RS01890	COG0540	Belongs to the ATCase OTCase family
HPY08_RS01900	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
HPY08_RS01910	COG0564	pseudouridine synthase activity
HPY08_RS01915	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
HPY08_RS01920	COG4269	membrane
HPY08_RS01930	COG0525	valine-tRNA ligase activity
HPY08_RS01935	COG2927	DNA polymerase III (CHI subunit)
HPY08_RS01940	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
HPY08_RS01945	COG0795	lipopolysaccharide-transporting ATPase activity
HPY08_RS01950	COG0795	lipopolysaccharide-transporting ATPase activity
HPY08_RS01965	COG3437	response regulator, receiver
HPY08_RS02005	COG0066	3-isopropylmalate dehydratase activity
HPY08_RS02010	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
HPY08_RS02015	COG0473	3-isopropylmalate dehydrogenase activity
HPY08_RS02035	COG0583	DNA-binding transcription factor activity
HPY08_RS02040	COG1022	Amp-dependent synthetase and ligase
HPY08_RS02045	COG0028	Belongs to the TPP enzyme family
HPY08_RS02050	COG0440	acetolactate synthase activity
HPY08_RS02055	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
HPY08_RS02060	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
HPY08_RS02065	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
HPY08_RS02075	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
HPY08_RS02080	COG3079	Belongs to the UPF0149 family
HPY08_RS02085	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
HPY08_RS02090	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
HPY08_RS02105	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
HPY08_RS02115	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
HPY08_RS02120	COG1595	DNA-templated transcription, initiation
HPY08_RS02125	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
HPY08_RS02130	COG3026	antisigma factor binding
HPY08_RS02135	COG3086	response to oxidative stress
HPY08_RS02140	COG0481	GTPase activity
HPY08_RS02150	COG0571	ribonuclease III activity
HPY08_RS02155	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
HPY08_RS02160	COG1381	Involved in DNA repair and RecF pathway recombination
HPY08_RS02165	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
HPY08_RS02200	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
HPY08_RS02205	COG3956	TIGRFAM MazG family protein
HPY08_RS02210	COG0504	CTP synthase activity
HPY08_RS02215	COG0148	phosphopyruvate hydratase activity
HPY08_RS02220	COG0617	tRNA 3'-terminal CCA addition
HPY08_RS02225	COG3267	Type II secretory pathway component ExeA
HPY08_RS02225	COG3409	Peptidoglycan-binding domain 1 protein
HPY08_RS02235	COG4991	sh3 domain protein
HPY08_RS02240	COG0306	phosphate transporter
HPY08_RS02245	COG1392	Phosphate transport regulator
HPY08_RS02250	COG3025	triphosphatase activity
HPY08_RS02255	COG0840	transmembrane signaling receptor activity
HPY08_RS02260	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
HPY08_RS02270	COG1538	Outer membrane efflux protein
HPY08_RS02275	COG0494	nUDIX hydrolase
HPY08_RS02280	COG3151	Protein conserved in bacteria
HPY08_RS02290	COG3150	esterase
HPY08_RS02295	COG0187	DNA topoisomerase II activity
HPY08_RS02300	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
HPY08_RS02310	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
HPY08_RS02315	COG0237	dephospho-CoA kinase activity
HPY08_RS02325	COG1459	type II secretion system
HPY08_RS02330	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
HPY08_RS02335	COG4969	Belongs to the N-Me-Phe pilin family
HPY08_RS02340	COG0157	Belongs to the NadC ModD family
HPY08_RS02350	COG0716	FMN binding
HPY08_RS02355	COG4974	Belongs to the 'phage' integrase family
HPY08_RS02360	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
HPY08_RS02365	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
HPY08_RS02370	COG2186	Transcriptional regulator
HPY08_RS02375	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
HPY08_RS02380	COG0508	dehydrogenase complex catalyzes the overall conversion of
HPY08_RS02385	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
HPY08_RS02400	COG3116	cell division
HPY08_RS02405	COG0768	penicillin binding
HPY08_RS02410	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
HPY08_RS02415	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
HPY08_RS02425	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
HPY08_RS02430	COG0772	Belongs to the SEDS family
HPY08_RS02435	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
HPY08_RS02440	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
HPY08_RS02445	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
HPY08_RS02450	COG0849	cell division
HPY08_RS02455	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
HPY08_RS02460	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
HPY08_RS02470	COG0653	protein targeting
HPY08_RS02475	COG0494	nUDIX hydrolase
HPY08_RS02480	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
HPY08_RS02485	COG0505	Belongs to the CarA family
HPY08_RS02490	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
HPY08_RS02505	COG0730	response to heat
HPY08_RS02510	COG0583	DNA-binding transcription factor activity
HPY08_RS02515	COG2860	membrane
HPY08_RS02520	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
HPY08_RS02530	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
HPY08_RS02540	COG0493	'glutamate synthase
HPY08_RS02545	COG0067	glutamate synthase
HPY08_RS02545	COG0069	glutamate synthase activity
HPY08_RS02545	COG0070	glutamate synthase
HPY08_RS02555	COG0069	glutamate synthase activity
HPY08_RS02555	COG0067	glutamate synthase
HPY08_RS02555	COG0070	glutamate synthase
HPY08_RS02560	COG1242	4 iron, 4 sulfur cluster binding
HPY08_RS02565	COG5001	Diguanylate cyclase
HPY08_RS02565	COG2203	Gaf domain
HPY08_RS02565	COG3706	GGDEF domain
HPY08_RS02565	COG4251	negative regulation of phosphorylation
HPY08_RS02570	COG0784	Response regulator, receiver
HPY08_RS02570	COG2198	Histidine kinase
HPY08_RS02570	COG5002	protein histidine kinase activity
HPY08_RS02575	COG0745	RESPONSE REGULATOR receiver
HPY08_RS02585	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
HPY08_RS02605	COG0083	homoserine kinase activity
HPY08_RS02610	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
HPY08_RS02615	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
HPY08_RS02620	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
HPY08_RS02625	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
HPY08_RS02640	COG1115	amino acid carrier protein
HPY08_RS02645	COG3022	response to hydroperoxide
HPY08_RS02655	COG0084	hydrolase, TatD family'
HPY08_RS02660	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
HPY08_RS02670	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
HPY08_RS02675	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
HPY08_RS02680	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
HPY08_RS02685	COG0813	purine-nucleoside phosphorylase activity
HPY08_RS02695	COG0560	Phosphoserine phosphatase
HPY08_RS02705	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
HPY08_RS02710	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
HPY08_RS02715	COG1022	Amp-dependent synthetase and ligase
HPY08_RS02730	COG3250	beta-galactosidase activity
HPY08_RS02735	COG1609	Transcriptional regulator
HPY08_RS02740	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
HPY08_RS02755	COG0569	domain protein
HPY08_RS02755	COG0189	ligase activity
HPY08_RS02760	COG0456	acetyltransferase
HPY08_RS02770	COG2171	N-acyltransferase activity
HPY08_RS02775	COG3141	response to X-ray
HPY08_RS02790	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
HPY08_RS02795	COG1074	ATP-dependent DNA helicase activity
HPY08_RS02800	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
HPY08_RS02810	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
HPY08_RS02810	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
HPY08_RS02820	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
HPY08_RS02825	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
HPY08_RS02830	COG2166	iron-sulfur cluster assembly
HPY08_RS02835	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
HPY08_RS02840	COG0693	protein deglycase activity
HPY08_RS02845	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
HPY08_RS02850	COG3248	Nucleoside-binding outer membrane protein
HPY08_RS02860	COG1595	DNA-templated transcription, initiation
HPY08_RS02870	COG2211	Major facilitator Superfamily
HPY08_RS02875	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
HPY08_RS02885	COG2813	Specifically methylates the guanine in position
HPY08_RS02890	COG0271	Belongs to the BolA IbaG family
HPY08_RS02895	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
HPY08_RS02900	COG1805	sodium ion transport
HPY08_RS02905	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
HPY08_RS02910	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
HPY08_RS02915	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
HPY08_RS02920	COG2871	sodium ion transport
HPY08_RS02925	COG1477	protein flavinylation
HPY08_RS02945	COG3706	GGDEF domain
HPY08_RS02950	COG0733	neurotransmitter:sodium symporter activity
HPY08_RS02960	COG0189	ligase activity
HPY08_RS02965	COG4067	protein conserved in archaea
HPY08_RS02965	COG0189	ligase activity
HPY08_RS02970	COG2195	Cleaves the N-terminal amino acid of tripeptides
HPY08_RS02975	COG2252	PERMEase
HPY08_RS02980	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
HPY08_RS02995	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
HPY08_RS03000	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
HPY08_RS03005	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
HPY08_RS03010	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
HPY08_RS03010	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
HPY08_RS03025	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
HPY08_RS03030	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
HPY08_RS03035	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
HPY08_RS03040	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
HPY08_RS03050	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
HPY08_RS03055	COG0024	Methionine aminopeptidase
HPY08_RS03060	COG0052	Belongs to the universal ribosomal protein uS2 family
HPY08_RS03065	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
HPY08_RS03070	COG0528	UMP kinase activity
HPY08_RS03075	COG0233	cytoplasmic translational termination
HPY08_RS03080	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
HPY08_RS03085	COG0575	Belongs to the CDS family
HPY08_RS03090	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
HPY08_RS03095	COG0750	zinc metalloprotease
HPY08_RS03105	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
HPY08_RS03110	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
HPY08_RS03115	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
HPY08_RS03120	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
HPY08_RS03125	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
HPY08_RS03130	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
HPY08_RS03135	COG0587	DNA-directed DNA polymerase activity
HPY08_RS03140	COG0825	malonyl-CoA metabolic process
HPY08_RS03145	COG0037	tRNA processing
HPY08_RS03155	COG3479	Phenolic acid decarboxylase
HPY08_RS03160	COG0347	Belongs to the P(II) protein family
HPY08_RS03165	COG3021	interspecies interaction between organisms
HPY08_RS03170	COG0741	lytic transglycosylase activity
HPY08_RS03170	COG1388	LysM domain
HPY08_RS03175	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
HPY08_RS03180	COG2226	methyltransferase
HPY08_RS03185	COG0328	RNA-DNA hybrid ribonuclease activity
HPY08_RS03200	COG1960	acyl-CoA dehydrogenase activity
HPY08_RS03205	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
HPY08_RS03210	COG0121	glutamine amidotransferase
HPY08_RS03215	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
HPY08_RS03220	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
HPY08_RS03225	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
HPY08_RS03230	COG3706	GGDEF domain
HPY08_RS03235	COG1187	pseudouridine synthase activity
HPY08_RS03240	COG2840	Smr protein MutS2
HPY08_RS03270	COG2217	Heavy metal translocating P-type atpase
HPY08_RS03270	COG2608	mercury ion transmembrane transporter activity
HPY08_RS03275	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
HPY08_RS03290	COG4774	siderophore transport
HPY08_RS03290	COG1629	transport
HPY08_RS03295	COG2375	cellular response to nickel ion
HPY08_RS03300	COG3433	isochorismatase activity
HPY08_RS03300	COG2226	methyltransferase
HPY08_RS03300	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
HPY08_RS03335	COG0784	Response regulator, receiver
HPY08_RS03335	COG0835	chemotaxis
HPY08_RS03340	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
HPY08_RS03345	COG1815	bacterial-type flagellum-dependent cell motility
HPY08_RS03360	COG1749	Flagellar hook protein flgE
HPY08_RS03365	COG4787	bacterial-type flagellum-dependent cell motility
HPY08_RS03375	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
HPY08_RS03380	COG1706	bacterial-type flagellum-dependent cell motility
HPY08_RS03385	COG3951	Flagellar rod assembly protein muramidase FlgJ
HPY08_RS03385	COG1705	Flagellar rod assembly protein muramidase FlgJ
HPY08_RS03400	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
HPY08_RS03405	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
HPY08_RS03490	COG0012	GTP binding
HPY08_RS03495	COG0193	aminoacyl-tRNA hydrolase activity
HPY08_RS03500	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
HPY08_RS03505	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
HPY08_RS03510	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
HPY08_RS03515	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
HPY08_RS03520	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
HPY08_RS03525	COG2890	protein-(glutamine-N5) methyltransferase activity
HPY08_RS03535	COG2912	Transglutaminase-like superfamily
HPY08_RS03540	COG2877	3-deoxy-8-phosphooctulonate synthase activity
HPY08_RS03545	COG0737	Belongs to the 5'-nucleotidase family
HPY08_RS03550	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
HPY08_RS03555	COG2233	PERMEase
HPY08_RS03580	COG1393	Belongs to the ArsC family
HPY08_RS03585	COG4783	chaperone-mediated protein folding
HPY08_RS03605	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
HPY08_RS03620	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
HPY08_RS03630	COG1876	peptidase activity
HPY08_RS03640	COG1393	Belongs to the ArsC family
HPY08_RS03660	COG2837	iron assimilation
HPY08_RS03665	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
HPY08_RS03670	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
HPY08_RS03675	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
HPY08_RS03680	COG1334	flagellar protein FlaG
HPY08_RS03685	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
HPY08_RS03695	COG1516	flagellar protein fliS
HPY08_RS03705	COG4191	Histidine kinase
HPY08_RS03715	COG1677	Flagellar hook-basal body complex protein FliE
HPY08_RS03725	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
HPY08_RS03755	COG1580	Controls the rotational direction of flagella during chemotaxis
HPY08_RS03780	COG1987	bacterial-type flagellum assembly
HPY08_RS03785	COG1684	flagellar biosynthetic protein fliR
HPY08_RS03795	COG2840	Smr protein MutS2
HPY08_RS03800	COG2890	protein-(glutamine-N5) methyltransferase activity
HPY08_RS03805	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
HPY08_RS03810	COG2860	membrane
HPY08_RS03815	COG3101	peptidyl-lysine hydroxylation
HPY08_RS03825	COG0431	NADPH-dependent FMN reductase
HPY08_RS03830	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
HPY08_RS03830	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
HPY08_RS03835	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
HPY08_RS03840	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
HPY08_RS03845	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
HPY08_RS03850	COG0735	belongs to the Fur family
HPY08_RS03860	COG0583	DNA-binding transcription factor activity
HPY08_RS03870	COG1346	cytolysis
HPY08_RS03885	COG0596	Alpha beta hydrolase
HPY08_RS03890	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
HPY08_RS03895	COG0033	Phosphoglucomutase
HPY08_RS03905	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
HPY08_RS03910	COG0372	Belongs to the citrate synthase family
HPY08_RS03915	COG2009	succinate dehydrogenase
HPY08_RS03920	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
HPY08_RS03925	COG1053	succinate dehydrogenase
HPY08_RS03935	COG0567	Dehydrogenase, E1 component
HPY08_RS03940	COG0508	dehydrogenase complex catalyzes the overall conversion of
HPY08_RS03945	COG0045	succinate-CoA ligase (ADP-forming) activity
HPY08_RS03955	COG1108	ABC-type Mn2 Zn2 transport systems permease components
HPY08_RS03960	COG1121	(ABC) transporter
HPY08_RS03965	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
HPY08_RS03970	COG4977	sequence-specific DNA binding
HPY08_RS03975	COG1918	ferrous iron import across plasma membrane
HPY08_RS03995	COG0018	arginyl-trna synthetase
HPY08_RS04005	COG1025	Belongs to the peptidase M16 family
HPY08_RS04010	COG2062	phosphohistidine phosphatase, SixA
HPY08_RS04040	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
HPY08_RS04045	COG0784	Response regulator, receiver
HPY08_RS04045	COG2198	Histidine kinase
HPY08_RS04045	COG0643	Histidine kinase
HPY08_RS04050	COG2201	protein-glutamate methylesterase activity
HPY08_RS04055	COG1192	Involved in chromosome partitioning
HPY08_RS04065	COG0835	chemotaxis
HPY08_RS04075	COG4133	protoheme IX ABC transporter activity
HPY08_RS04080	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
HPY08_RS04085	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
HPY08_RS04095	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
HPY08_RS04100	COG1138	Cytochrome C-type biogenesis protein
HPY08_RS04105	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
HPY08_RS04110	COG4235	cytochrome complex assembly
HPY08_RS04110	COG3088	subunit of a heme lyase
HPY08_RS04120	COG2853	Lipoprotein
HPY08_RS04140	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
HPY08_RS04145	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
HPY08_RS04150	COG0123	including yeast histone deacetylase and acetoin utilization protein
HPY08_RS04165	COG3083	sulfuric ester hydrolase activity
HPY08_RS04170	COG3082	Protein of unknown function (DUF1414)
HPY08_RS04175	COG3081	Nucleoid-associated protein
HPY08_RS04185	COG1757	Na H antiporter
HPY08_RS04190	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
HPY08_RS04195	COG2095	MarC family integral membrane protein
HPY08_RS04200	COG1012	belongs to the aldehyde dehydrogenase family
HPY08_RS04200	COG1454	alcohol dehydrogenase
HPY08_RS04210	COG0659	secondary active sulfate transmembrane transporter activity
HPY08_RS04215	COG1530	ribonuclease E activity
HPY08_RS04220	COG0564	pseudouridine synthase activity
HPY08_RS04225	COG0424	maF-like protein
HPY08_RS04230	COG1399	metal-binding, possibly nucleic acid-binding protein
HPY08_RS04235	COG0333	Belongs to the bacterial ribosomal protein bL32 family
HPY08_RS04240	COG0416	fatty acid biosynthetic process
HPY08_RS04245	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
HPY08_RS04255	COG1028	Short-chain dehydrogenase reductase Sdr
HPY08_RS04260	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
HPY08_RS04265	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
HPY08_RS04270	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
HPY08_RS04275	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
HPY08_RS04280	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
HPY08_RS04290	COG0084	hydrolase, TatD family'
HPY08_RS04295	COG1263	PTS System
HPY08_RS04295	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
HPY08_RS04305	COG0733	neurotransmitter:sodium symporter activity
HPY08_RS04320	COG4667	esterase of the alpha-beta hydrolase superfamily
HPY08_RS04330	COG1940	carbohydrate kinase activity
HPY08_RS04335	COG0784	Response regulator, receiver
HPY08_RS04335	COG0835	chemotaxis
HPY08_RS04350	COG2226	methyltransferase
HPY08_RS04360	COG0676	glucose-6-phosphate 1-epimerase activity
HPY08_RS04365	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
HPY08_RS04370	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
HPY08_RS04380	COG3139	Protein of unknown function (DUF1315)
HPY08_RS04385	COG0252	asparaginase activity
HPY08_RS04390	COG0616	signal peptide processing
HPY08_RS04395	COG1902	pentaerythritol trinitrate reductase activity
HPY08_RS04395	COG0446	pyridine nucleotide-disulphide oxidoreductase
HPY08_RS04400	COG0788	formyltetrahydrofolate deformylase activity
HPY08_RS04410	COG1199	ATP-dependent helicase activity
HPY08_RS04415	COG1214	PFAM Peptidase M22, glycoprotease
HPY08_RS04430	COG0596	Alpha beta hydrolase
HPY08_RS04435	COG0318	PFAM AMP-dependent synthetase and ligase
HPY08_RS04440	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
HPY08_RS04455	COG0232	Belongs to the dGTPase family. Type 2 subfamily
HPY08_RS04460	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
HPY08_RS04465	COG0436	Aminotransferase
HPY08_RS04470	COG1169	isochorismate synthase
HPY08_RS04475	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
HPY08_RS04480	COG0596	Alpha beta hydrolase
HPY08_RS04500	COG3135	benzoate transporter
HPY08_RS04525	COG3015	lipoprotein NlpE involved in copper resistance
HPY08_RS04530	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
HPY08_RS04535	COG2894	cell division
HPY08_RS04540	COG0850	regulation of cytokinetic process
HPY08_RS04545	COG3100	YcgL domain-containing protein
HPY08_RS04550	COG2951	lytic endotransglycosylase activity
HPY08_RS04560	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
HPY08_RS04565	COG3005	denitrification pathway
HPY08_RS04570	COG0243	molybdopterin cofactor binding
HPY08_RS04585	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
HPY08_RS04600	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
HPY08_RS04635	COG4589	Belongs to the CDS family
HPY08_RS04645	COG5001	Diguanylate cyclase
HPY08_RS04645	COG3300	MHYT domain
HPY08_RS04655	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
HPY08_RS04660	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
HPY08_RS04665	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
HPY08_RS04670	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
HPY08_RS04680	COG4191	Histidine kinase
HPY08_RS04690	COG0544	peptidyl-prolyl cis-trans isomerase activity
HPY08_RS04700	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
HPY08_RS04705	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
HPY08_RS04710	COG0776	regulation of translation
HPY08_RS04715	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
HPY08_RS04720	COG1555	photosystem II stabilization
HPY08_RS04725	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
HPY08_RS04730	COG0539	negative regulation of cytoplasmic translation
HPY08_RS04740	COG0776	regulation of translation
HPY08_RS04745	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
HPY08_RS04750	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
HPY08_RS04770	COG0583	DNA-binding transcription factor activity
HPY08_RS04780	COG0686	Belongs to the AlaDH PNT family
HPY08_RS04790	COG1674	ftsk spoiiie
HPY08_RS04795	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
HPY08_RS04800	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
HPY08_RS04805	COG2186	Transcriptional regulator
HPY08_RS04820	COG0537	adenosine 5'-monophosphoramidase activity
HPY08_RS04845	COG3150	esterase
HPY08_RS04850	COG1252	NADH dehydrogenase
HPY08_RS04875	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
HPY08_RS04885	COG4591	ABC-type transport system involved in lipoprotein release permease component
HPY08_RS04890	COG1136	(ABC) transporter
HPY08_RS04895	COG4591	ABC-type transport system involved in lipoprotein release permease component
HPY08_RS04905	COG0658	competence protein
HPY08_RS04905	COG2333	competence protein COMEC
HPY08_RS04910	COG1132	(ABC) transporter
HPY08_RS04915	COG1663	tetraacyldisaccharide 4'-kinase activity
HPY08_RS04920	COG2835	tetraacyldisaccharide 4'-kinase activity
HPY08_RS04925	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
HPY08_RS04930	COG2719	SpoVR family
HPY08_RS04935	COG2718	Belongs to the UPF0229 family
HPY08_RS04940	COG2766	serine protein kinase
HPY08_RS04945	COG3013	Belongs to the UPF0304 family
HPY08_RS04955	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
HPY08_RS04960	COG0840	transmembrane signaling receptor activity
HPY08_RS04970	COG1882	Formate acetyltransferase
HPY08_RS04995	COG4160	amino acid transport
HPY08_RS05000	COG0708	Exodeoxyribonuclease III
HPY08_RS05010	COG3923	Primosomal replication protein n
HPY08_RS05015	COG0730	response to heat
HPY08_RS05020	COG1199	ATP-dependent helicase activity
HPY08_RS05035	COG3012	SEC-C Motif Domain Protein
HPY08_RS05040	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
HPY08_RS05045	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
HPY08_RS05050	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
HPY08_RS05055	COG0215	cysteine-tRNA ligase activity
HPY08_RS05060	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
HPY08_RS05065	COG0632	four-way junction helicase activity
HPY08_RS05075	COG1271	oxidase subunit
HPY08_RS05080	COG1294	oxidase, subunit
HPY08_RS05085	COG4890	Cyd operon protein YbgT
HPY08_RS05090	COG3790	cyd operon protein YbgE
HPY08_RS05095	COG0824	Thioesterase
HPY08_RS05100	COG0811	peptide transport
HPY08_RS05115	COG0823	Involved in the tonB-independent uptake of proteins
HPY08_RS05120	COG2885	chlorophyll binding
HPY08_RS05130	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
HPY08_RS05140	COG0784	Response regulator, receiver
HPY08_RS05140	COG5002	protein histidine kinase activity
HPY08_RS05150	COG1482	cell wall glycoprotein biosynthetic process
HPY08_RS05155	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
HPY08_RS05155	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
HPY08_RS05155	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
HPY08_RS05160	COG2207	Transcriptional regulator
HPY08_RS05170	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
HPY08_RS05175	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
HPY08_RS05180	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
HPY08_RS05190	COG1012	belongs to the aldehyde dehydrogenase family
HPY08_RS05195	COG3284	Transcriptional regulator
HPY08_RS05200	COG4628	conserved protein (DUF2132)
HPY08_RS05210	COG0415	Belongs to the DNA photolyase family
HPY08_RS05245	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
HPY08_RS05255	COG3008	intermembrane lipid transfer
HPY08_RS05255	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
HPY08_RS05260	COG2995	paraquat-inducible protein a
HPY08_RS05265	COG0668	transmembrane transport
HPY08_RS05285	COG1309	transcriptional regulator
HPY08_RS05290	COG1012	belongs to the aldehyde dehydrogenase family
HPY08_RS05310	COG1960	acyl-CoA dehydrogenase activity
HPY08_RS05315	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
HPY08_RS05320	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
HPY08_RS05330	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
HPY08_RS05345	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
HPY08_RS05350	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
HPY08_RS05355	COG0297	glycogen (starch) synthase activity
HPY08_RS05375	COG3070	regulator of competence-specific genes
HPY08_RS05380	COG1609	Transcriptional regulator
HPY08_RS05385	COG3381	protein complex oligomerization
HPY08_RS05390	COG0745	RESPONSE REGULATOR receiver
HPY08_RS05395	COG1434	Gram-negative-bacterium-type cell wall biogenesis
HPY08_RS05400	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
HPY08_RS05405	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
HPY08_RS05410	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
HPY08_RS05425	COG1280	lysine exporter protein (LysE YggA)
HPY08_RS05430	COG1032	radical SAM domain protein
HPY08_RS05435	COG5001	Diguanylate cyclase
HPY08_RS05440	COG0612	Peptidase, M16
HPY08_RS05455	COG0583	DNA-binding transcription factor activity
HPY08_RS05460	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
HPY08_RS05470	COG2350	Protein conserved in bacteria
HPY08_RS05475	COG1607	acyl-coa hydrolase
HPY08_RS05490	COG1434	Gram-negative-bacterium-type cell wall biogenesis
HPY08_RS05495	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
HPY08_RS05505	COG2116	formate transmembrane transporter activity
HPY08_RS05510	COG4459	periplasmic nitrate reductase
HPY08_RS05515	COG3005	denitrification pathway
HPY08_RS05520	COG0243	molybdopterin cofactor binding
HPY08_RS05535	COG1227	inorganic diphosphatase activity
HPY08_RS05550	COG4172	Belongs to the ABC transporter superfamily
HPY08_RS05565	COG4168	peptide transport system, permease
HPY08_RS05575	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
HPY08_RS05580	COG1842	Phage shock protein A
HPY08_RS05595	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
HPY08_RS05610	COG2818	Glycosylase
HPY08_RS05615	COG0626	cystathionine gamma-synthase activity
HPY08_RS05625	COG0733	neurotransmitter:sodium symporter activity
HPY08_RS05630	COG0564	pseudouridine synthase activity
HPY08_RS05635	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
HPY08_RS05640	COG4136	ATPase activity
HPY08_RS05645	COG4135	transport system, permease component
HPY08_RS05650	COG4134	Bacterial extracellular solute-binding protein
HPY08_RS05660	COG3313	Fe-S protein
HPY08_RS05670	COG0814	amino acid
HPY08_RS05680	COG2239	Acts as a magnesium transporter
HPY08_RS05685	COG0784	Response regulator, receiver
HPY08_RS05685	COG2205	protein histidine kinase activity
HPY08_RS05700	COG4934	collagen metabolic process
HPY08_RS05735	COG0840	transmembrane signaling receptor activity
HPY08_RS05745	COG3706	GGDEF domain
HPY08_RS05745	COG5001	Diguanylate cyclase
HPY08_RS05745	COG2203	Gaf domain
HPY08_RS05745	COG4251	negative regulation of phosphorylation
HPY08_RS05750	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
HPY08_RS05770	COG1061	Type III restriction enzyme res subunit
HPY08_RS05775	COG1187	pseudouridine synthase activity
HPY08_RS05780	COG2814	Major facilitator Superfamily
HPY08_RS05790	COG0702	epimerase
HPY08_RS05795	COG0534	Mate efflux family protein
HPY08_RS05800	COG4181	ATPase activity
HPY08_RS05815	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
HPY08_RS05825	COG1748	Saccharopine dehydrogenase
HPY08_RS05840	COG1538	Outer membrane efflux protein
HPY08_RS05880	COG1451	nucleotide metabolic process
HPY08_RS05915	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
HPY08_RS05930	COG3290	protein histidine kinase activity
HPY08_RS05935	COG4565	transcriptional regulatory protein
HPY08_RS05945	COG0784	Response regulator, receiver
HPY08_RS05945	COG0835	chemotaxis
HPY08_RS05995	COG1085	galactose-1-phosphate uridylyltransferase
HPY08_RS06000	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
HPY08_RS06005	COG2017	converts alpha-aldose to the beta-anomer
HPY08_RS06020	COG3527	Alpha-acetolactate decarboxylase
HPY08_RS06035	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
HPY08_RS06085	COG1271	oxidase subunit
HPY08_RS06090	COG1294	oxidase, subunit
HPY08_RS06095	COG0577	efflux transmembrane transporter activity
HPY08_RS06095	COG1136	(ABC) transporter
HPY08_RS06100	COG1136	(ABC) transporter
HPY08_RS06100	COG0577	efflux transmembrane transporter activity
HPY08_RS06105	COG0577	efflux transmembrane transporter activity
HPY08_RS06105	COG1136	(ABC) transporter
HPY08_RS06135	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
HPY08_RS06150	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
HPY08_RS06160	COG2723	6-phospho-beta-galactosidase activity
HPY08_RS06165	COG1609	Transcriptional regulator
HPY08_RS06170	COG0251	oxidation-reduction process
HPY08_RS06175	COG2731	YhcH YjgK YiaL family protein
HPY08_RS06180	COG0584	glycerophosphoryl diester phosphodiesterase
HPY08_RS06185	COG1349	DNA-binding transcription factor activity
HPY08_RS06190	COG3842	ATPase activity
HPY08_RS06195	COG0395	ABC-type sugar transport system, permease component
HPY08_RS06200	COG1175	transmembrane transport
HPY08_RS06215	COG0811	peptide transport
HPY08_RS06220	COG0811	peptide transport
HPY08_RS06225	COG0848	biopolymer transport protein
HPY08_RS06230	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
HPY08_RS06240	COG1793	dna ligase
HPY08_RS06250	COG0534	Mate efflux family protein
HPY08_RS06260	COG3001	Fructosamine kinase
HPY08_RS06270	COG0791	NLP P60 protein
HPY08_RS06275	COG0840	transmembrane signaling receptor activity
HPY08_RS06290	COG1940	carbohydrate kinase activity
HPY08_RS06310	COG0746	molybdenum cofactor guanylyltransferase activity
HPY08_RS06315	COG3842	ATPase activity
HPY08_RS06320	COG4662	Binding-protein-dependent transport system inner membrane component
HPY08_RS06330	COG2204	response regulator
HPY08_RS06335	COG3852	Histidine kinase
HPY08_RS06340	COG0488	(ABC) transporter
HPY08_RS06345	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
HPY08_RS06375	COG0243	molybdopterin cofactor binding
HPY08_RS06375	COG3383	formate dehydrogenase (NAD+) activity
HPY08_RS06380	COG0437	4 iron, 4 sulfur cluster binding
HPY08_RS06395	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
HPY08_RS06400	COG1666	GTP binding
HPY08_RS06405	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
HPY08_RS06420	COG2996	Protein conserved in bacteria
HPY08_RS06430	COG3008	intermembrane lipid transfer
HPY08_RS06435	COG2995	paraquat-inducible protein a
HPY08_RS06440	COG1132	(ABC) transporter
HPY08_RS06445	COG1956	GAF domain-containing protein
HPY08_RS06450	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
HPY08_RS06465	COG0308	aminopeptidase N
HPY08_RS06480	COG0167	dihydroorotate dehydrogenase activity
HPY08_RS06490	COG0116	Belongs to the methyltransferase superfamily
HPY08_RS06490	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
HPY08_RS06515	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
HPY08_RS06520	COG1067	ATP-dependent peptidase activity
HPY08_RS06525	COG3120	sequence-specific DNA binding
HPY08_RS06600	COG1073	alpha beta
HPY08_RS06600	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
HPY08_RS06600	COG3064	Membrane
HPY08_RS06605	COG2994	toxin metabolic process
HPY08_RS06630	COG0784	Response regulator, receiver
HPY08_RS06630	COG2205	protein histidine kinase activity
HPY08_RS06645	COG3278	Belongs to the heme-copper respiratory oxidase family
HPY08_RS06660	COG2010	Cytochrome c
HPY08_RS06670	COG2217	Heavy metal translocating P-type atpase
HPY08_RS06685	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
HPY08_RS06690	COG0589	response to stress
HPY08_RS06700	COG0037	tRNA processing
HPY08_RS06720	COG3842	ATPase activity
HPY08_RS06730	COG1177	transmembrane transport
HPY08_RS06740	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
HPY08_RS06755	COG1115	amino acid carrier protein
HPY08_RS06760	COG1280	lysine exporter protein (LysE YggA)
HPY08_RS06790	COG3501	Rhs element vgr protein
HPY08_RS06800	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
HPY08_RS06820	COG0513	Belongs to the DEAD box helicase family
HPY08_RS06825	COG2076	Multidrug Resistance protein
HPY08_RS06830	COG0415	Belongs to the DNA photolyase family
HPY08_RS06835	COG0477	Major facilitator Superfamily
HPY08_RS06840	COG0583	DNA-binding transcription factor activity
HPY08_RS06850	COG0402	S-adenosylhomocysteine deaminase activity
HPY08_RS06855	COG0095	Lipoate-protein ligase
HPY08_RS06860	COG0443	Heat shock 70 kDa protein
HPY08_RS06870	COG1643	Atp-dependent helicase
HPY08_RS06905	COG0443	Heat shock 70 kDa protein
HPY08_RS06910	COG3706	GGDEF domain
HPY08_RS06940	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
HPY08_RS06945	COG0602	queuosine metabolic process
HPY08_RS06950	COG0561	phosphatase activity
HPY08_RS06960	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
HPY08_RS06965	COG4597	amino acid ABC transporter
HPY08_RS06970	COG0765	amino acid transport
HPY08_RS06975	COG1126	abc transporter atp-binding protein
HPY08_RS06980	COG0670	Belongs to the BI1 family
HPY08_RS06985	COG2920	part of a sulfur-relay system
HPY08_RS06990	COG1254	Belongs to the acylphosphatase family
HPY08_RS06995	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
HPY08_RS07000	COG2801	Transposase and inactivated derivatives
HPY08_RS07005	COG3706	GGDEF domain
HPY08_RS07015	COG2205	protein histidine kinase activity
HPY08_RS07015	COG3437	response regulator, receiver
HPY08_RS07015	COG4999	Histidine kinase
HPY08_RS07015	COG3850	Histidine kinase
HPY08_RS07020	COG3437	response regulator, receiver
HPY08_RS07025	COG0625	glutathione transferase activity
HPY08_RS07035	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
HPY08_RS07045	COG2195	Cleaves the N-terminal amino acid of tripeptides
HPY08_RS07075	COG0372	Belongs to the citrate synthase family
HPY08_RS07080	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
HPY08_RS07110	COG0583	DNA-binding transcription factor activity
HPY08_RS07115	COG4771	TonB-dependent receptor
HPY08_RS07140	COG1566	PFAM secretion protein HlyD family protein
HPY08_RS07160	COG1129	ABC transporter
HPY08_RS07185	COG0745	RESPONSE REGULATOR receiver
HPY08_RS07190	COG5002	protein histidine kinase activity
HPY08_RS07195	COG3713	MltA-interacting MipA family protein
HPY08_RS07200	COG2990	Protein conserved in bacteria
HPY08_RS07210	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
HPY08_RS07210	COG4191	Histidine kinase
HPY08_RS07215	COG0471	metal ion transport
HPY08_RS07225	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
HPY08_RS07240	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
HPY08_RS07250	COG3768	UPF0283 membrane protein
HPY08_RS07255	COG3106	COG3106 Predicted ATPase
HPY08_RS07270	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
HPY08_RS07275	COG0494	nUDIX hydrolase
HPY08_RS07280	COG0814	amino acid
HPY08_RS07285	COG1760	l-serine dehydratase
HPY08_RS07290	COG0720	synthase
HPY08_RS07295	COG0840	transmembrane signaling receptor activity
HPY08_RS07300	COG0017	Asparaginyl-tRNA synthetase
HPY08_RS07305	COG0351	phosphomethylpyrimidine kinase
HPY08_RS07305	COG0352	thiamine-phosphate diphosphorylase activity
HPY08_RS07310	COG3437	response regulator, receiver
HPY08_RS07310	COG2770	Histidine kinase
HPY08_RS07315	COG1448	Aminotransferase
HPY08_RS07325	COG2176	DNA-directed DNA polymerase activity
HPY08_RS07330	COG0840	transmembrane signaling receptor activity
HPY08_RS07335	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
HPY08_RS07340	COG2943	transferase activity, transferring hexosyl groups
HPY08_RS07345	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
HPY08_RS07350	COG1846	Transcriptional regulator
HPY08_RS07375	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
HPY08_RS07390	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
HPY08_RS07395	COG3108	Peptidase M15
HPY08_RS07425	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
HPY08_RS07435	COG2814	Major facilitator Superfamily
HPY08_RS07455	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
HPY08_RS07460	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
HPY08_RS07465	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
HPY08_RS07495	COG0840	transmembrane signaling receptor activity
HPY08_RS07510	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
HPY08_RS07515	COG4139	cobalamin transport
HPY08_RS07520	COG2988	succinylglutamate desuccinylase activity
HPY08_RS07535	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
HPY08_RS07540	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
HPY08_RS07545	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
HPY08_RS07555	COG2925	Exonuclease
HPY08_RS07560	COG1380	Effector of murein hydrolase LrgA
HPY08_RS07565	COG1346	cytolysis
HPY08_RS07595	COG0776	regulation of translation
HPY08_RS07600	COG0072	phenylalanine-tRNA ligase activity
HPY08_RS07600	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
HPY08_RS07605	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
HPY08_RS07645	COG0322	excinuclease ABC activity
HPY08_RS07650	COG2197	response regulator
HPY08_RS07655	COG0417	DNA replication proofreading
HPY08_RS07660	COG5001	Diguanylate cyclase
HPY08_RS07670	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
HPY08_RS07675	COG3099	Belongs to the UPF0263 family
HPY08_RS07690	COG1228	amidohydrolase
HPY08_RS07695	COG0010	Belongs to the arginase family
HPY08_RS07700	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
HPY08_RS07705	COG2986	histidine ammonia-lyase
HPY08_RS07725	COG0247	lactate metabolic process
HPY08_RS07725	COG0277	FAD linked oxidase domain protein
HPY08_RS07740	COG2885	chlorophyll binding
HPY08_RS07760	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
HPY08_RS07770	COG0281	malic enzyme
HPY08_RS07780	COG2949	membrane
HPY08_RS07785	COG3706	GGDEF domain
HPY08_RS07790	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
HPY08_RS07800	COG0492	ferredoxin-NADP+ reductase activity
HPY08_RS07805	COG4988	ABC transporter
HPY08_RS07810	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
HPY08_RS07815	COG1187	pseudouridine synthase activity
HPY08_RS07820	COG0009	L-threonylcarbamoyladenylate synthase
HPY08_RS07825	COG0613	PHP domain protein
HPY08_RS07835	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
HPY08_RS07840	COG0512	Glutamine amidotransferase of anthranilate synthase
HPY08_RS07845	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
HPY08_RS07850	COG0135	phosphoribosylanthranilate isomerase activity
HPY08_RS07850	COG0134	indole-3-glycerol-phosphate synthase activity
HPY08_RS07855	COG0133	tryptophan synthase activity
HPY08_RS07860	COG0159	tryptophan synthase activity
HPY08_RS07870	COG1435	thymidine kinase activity
HPY08_RS07875	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
HPY08_RS07880	COG1801	Protein of unknown function DUF72
HPY08_RS07885	COG4106	trans-aconitate 2-methyltransferase activity
HPY08_RS07890	COG0500	methyltransferase
HPY08_RS07895	COG0189	ligase activity
HPY08_RS07895	COG4067	protein conserved in archaea
HPY08_RS07910	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
HPY08_RS07920	COG3852	Histidine kinase
HPY08_RS07935	COG3070	regulator of competence-specific genes
HPY08_RS07945	COG2431	L-lysine efflux transmembrane transporter activity
HPY08_RS07955	COG0076	glutamate decarboxylase activity
HPY08_RS07960	COG1737	Transcriptional regulator
HPY08_RS07965	COG1012	belongs to the aldehyde dehydrogenase family
HPY08_RS07965	COG1454	alcohol dehydrogenase
HPY08_RS07970	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
HPY08_RS07975	COG2985	domain, Protein
HPY08_RS07975	COG3273	potassium ion transport
HPY08_RS07980	COG0542	response to heat
HPY08_RS07985	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
HPY08_RS07990	COG1278	Cold shock
HPY08_RS08000	COG1187	pseudouridine synthase activity
HPY08_RS08005	COG0140	phosphoribosyl-ATP diphosphatase activity
HPY08_RS08005	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
HPY08_RS08010	COG0107	imidazoleglycerol-phosphate synthase activity
HPY08_RS08015	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
HPY08_RS08020	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
HPY08_RS08025	COG0131	Imidazoleglycerol-phosphate dehydratase
HPY08_RS08025	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
HPY08_RS08030	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
HPY08_RS08035	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
HPY08_RS08040	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
HPY08_RS08045	COG1757	Na H antiporter
HPY08_RS08050	COG2916	Histone family protein nucleoid-structuring protein H-NS
HPY08_RS08055	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
HPY08_RS08060	COG0482	sulfurtransferase activity
HPY08_RS08065	COG2915	High frequency lysogenization protein hflD homolog
HPY08_RS08070	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
HPY08_RS08080	COG2268	Band 7 protein
HPY08_RS08090	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
HPY08_RS08105	COG0300	oxidoreductase activity
HPY08_RS08115	COG0501	Belongs to the peptidase M48B family
HPY08_RS08125	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
HPY08_RS08130	COG2226	methyltransferase
HPY08_RS08135	COG0156	8-amino-7-oxononanoate synthase activity
HPY08_RS08140	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
HPY08_RS08145	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
HPY08_RS08150	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
HPY08_RS08155	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
HPY08_RS08160	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
HPY08_RS08165	COG0653	protein targeting
HPY08_RS08170	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
HPY08_RS08175	COG2199	diguanylate cyclase activity
HPY08_RS08175	COG2203	Gaf domain
HPY08_RS08185	COG4120	Belongs to the binding-protein-dependent transport system permease family
HPY08_RS08195	COG4628	conserved protein (DUF2132)
HPY08_RS08200	COG3092	negative regulation of chromosome organization
HPY08_RS08205	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
HPY08_RS08210	COG0280	phosphate acetyltransferase
HPY08_RS08210	COG0857	belongs to the CobB CobQ family
HPY08_RS08215	COG0435	Glutathione S-transferase
HPY08_RS08220	COG4608	Belongs to the ABC transporter superfamily
HPY08_RS08225	COG0444	Belongs to the ABC transporter superfamily
HPY08_RS08230	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
HPY08_RS08235	COG0601	transmembrane transport
HPY08_RS08255	COG2204	response regulator
HPY08_RS08260	COG3300	MHYT domain
HPY08_RS08260	COG5001	Diguanylate cyclase
HPY08_RS08265	COG4191	Histidine kinase
HPY08_RS08270	COG5002	protein histidine kinase activity
HPY08_RS08280	COG2201	protein-glutamate methylesterase activity
HPY08_RS08295	COG0009	L-threonylcarbamoyladenylate synthase
HPY08_RS08310	COG1881	PFAM PEBP family protein
HPY08_RS08335	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
HPY08_RS08340	COG0640	Transcriptional regulator
HPY08_RS08450	COG3706	GGDEF domain
HPY08_RS08470	COG1946	Acyl-CoA thioesterase
HPY08_RS08475	COG1522	sequence-specific DNA binding
HPY08_RS08485	COG0616	signal peptide processing
HPY08_RS08490	COG1028	Short-chain dehydrogenase reductase Sdr
HPY08_RS08495	COG2983	Belongs to the UPF0260 family
HPY08_RS08505	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
HPY08_RS08510	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
HPY08_RS08515	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
HPY08_RS08520	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
HPY08_RS08525	COG2832	Protein of unknown function (DUF454)
HPY08_RS08530	COG0745	RESPONSE REGULATOR receiver
HPY08_RS08535	COG0583	DNA-binding transcription factor activity
HPY08_RS08540	COG0778	Nitroreductase
HPY08_RS08545	COG1250	3-hydroxyacyl-CoA dehydrogenase
HPY08_RS08545	COG1024	Enoyl-CoA hydratase
HPY08_RS08550	COG0183	Belongs to the thiolase family
HPY08_RS08565	COG2067	long-chain fatty acid transport protein
HPY08_RS08570	COG2067	long-chain fatty acid transport protein
HPY08_RS08575	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
HPY08_RS08580	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
HPY08_RS08585	COG2982	Protein involved in outer membrane biogenesis
HPY08_RS08590	COG0572	uridine kinase
HPY08_RS08595	COG0489	protein tyrosine kinase activity
HPY08_RS08600	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
HPY08_RS08600	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
HPY08_RS08610	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
HPY08_RS08620	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
HPY08_RS08620	COG0517	IMP dehydrogenase activity
HPY08_RS08620	COG0617	tRNA 3'-terminal CCA addition
HPY08_RS08625	COG2199	diguanylate cyclase activity
HPY08_RS08630	COG0314	molybdopterin synthase activity
HPY08_RS08635	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
HPY08_RS08640	COG0315	cyclic pyranopterin monophosphate synthase activity
HPY08_RS08645	COG0521	Mo-molybdopterin cofactor biosynthetic process
HPY08_RS08650	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
HPY08_RS08655	COG0391	Required for morphogenesis under gluconeogenic growth conditions
HPY08_RS08660	COG2198	Histidine kinase
HPY08_RS08665	COG2204	response regulator
HPY08_RS08670	COG0556	nucleotide-excision repair
HPY08_RS08680	COG4657	Part of a membrane complex involved in electron transport
HPY08_RS08685	COG2878	Part of a membrane complex involved in electron transport
HPY08_RS08690	COG4656	Part of a membrane complex involved in electron transport
HPY08_RS08705	COG4660	Part of a membrane complex involved in electron transport
HPY08_RS08710	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
HPY08_RS08715	COG0346	lactoylglutathione lyase activity
HPY08_RS08730	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
HPY08_RS08735	COG2056	Na+-H+ antiporter family
HPY08_RS08740	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
HPY08_RS08745	COG1286	toxin biosynthetic process
HPY08_RS08750	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
HPY08_RS08755	COG0285	dihydrofolate synthase activity
HPY08_RS08760	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
HPY08_RS08765	COG0101	tRNA pseudouridine synthase activity
HPY08_RS08780	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
HPY08_RS08780	COG2190	(PTS) system
HPY08_RS08780	COG1263	PTS System
HPY08_RS08785	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
HPY08_RS08790	COG1940	carbohydrate kinase activity
HPY08_RS08790	COG1846	Transcriptional regulator
HPY08_RS08795	COG4651	solute:proton antiporter activity
HPY08_RS08795	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
HPY08_RS08800	COG0367	asparagine synthase
HPY08_RS08815	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
HPY08_RS08820	COG0563	adenylate kinase activity
HPY08_RS08825	COG0326	Molecular chaperone. Has ATPase activity
HPY08_RS08830	COG3710	Transcriptional regulator
HPY08_RS08845	COG0622	Phosphoesterase
HPY08_RS08850	COG1090	epimerase
HPY08_RS08855	COG0300	oxidoreductase activity
HPY08_RS08860	COG3118	belongs to the thioredoxin family
HPY08_RS08865	COG0330	HflC and HflK could
HPY08_RS08870	COG1585	Membrane protein implicated in regulation of membrane protease activity
HPY08_RS08875	COG0789	Transcriptional regulator
HPY08_RS08890	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
HPY08_RS08895	COG3115	cell septum assembly
HPY08_RS08900	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
HPY08_RS08905	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
HPY08_RS08910	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
HPY08_RS08920	COG2190	(PTS) system
HPY08_RS08925	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
HPY08_RS08930	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
HPY08_RS08935	COG1702	phosphate starvation-inducible protein PhoH
HPY08_RS08945	COG4535	Mg2 and Co2 transporter CorC
HPY08_RS08950	COG0815	Transfers the fatty acyl group on membrane lipoproteins
HPY08_RS08955	COG2888	peptidyl-tyrosine sulfation
HPY08_RS08960	COG0495	leucyl-tRNA aminoacylation
HPY08_RS08965	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
HPY08_RS08970	COG1466	dna polymerase III delta subunit
HPY08_RS08975	COG0799	negative regulation of ribosome biogenesis
HPY08_RS08980	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
HPY08_RS08985	COG0768	penicillin binding
HPY08_RS08990	COG0772	Belongs to the SEDS family
HPY08_RS08995	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
HPY08_RS09000	COG1686	Belongs to the peptidase S11 family
HPY08_RS09005	COG2921	Belongs to the UPF0250 family
HPY08_RS09010	COG0321	lipoyl(octanoyl) transferase activity
HPY08_RS09015	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
HPY08_RS09025	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
HPY08_RS09050	COG1596	polysaccharide export
HPY08_RS09060	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
HPY08_RS09090	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
HPY08_RS09100	COG0438	transferase activity, transferring glycosyl groups
HPY08_RS09110	COG1045	serine acetyltransferase
HPY08_RS09130	COG0110	maltose O-acetyltransferase activity
HPY08_RS09135	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
HPY08_RS09140	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
HPY08_RS09145	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
HPY08_RS09150	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
HPY08_RS09180	COG0366	Alpha amylase catalytic
HPY08_RS09185	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
HPY08_RS09185	COG1263	PTS System
HPY08_RS09190	COG1609	Transcriptional regulator
HPY08_RS09195	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
HPY08_RS09200	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
HPY08_RS09205	COG2011	ABC-type metal ion transport system permease component
HPY08_RS09210	COG1464	Belongs to the NlpA lipoprotein family
HPY08_RS09215	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
HPY08_RS09225	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
HPY08_RS09225	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
HPY08_RS09235	COG3706	GGDEF domain
HPY08_RS09240	COG1611	Belongs to the LOG family
HPY08_RS09245	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
HPY08_RS09250	COG2363	Small membrane protein
HPY08_RS09255	COG0583	DNA-binding transcription factor activity
HPY08_RS09260	COG0301	tRNA thio-modification
HPY08_RS09260	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
HPY08_RS09270	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
HPY08_RS09275	COG1722	exodeoxyribonuclease VII activity
HPY08_RS09280	COG0142	geranyltranstransferase activity
HPY08_RS09285	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
HPY08_RS09290	COG0564	pseudouridine synthase activity
HPY08_RS09295	COG3098	single-species biofilm formation
HPY08_RS09310	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
HPY08_RS09320	COG1671	Belongs to the UPF0178 family
HPY08_RS09325	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
HPY08_RS09330	COG0257	Belongs to the bacterial ribosomal protein bL36 family
HPY08_RS09335	COG0254	rRNA binding
HPY08_RS09340	COG1720	tRNA m6t6A37 methyltransferase activity
HPY08_RS09345	COG0442	prolyl-tRNA aminoacylation
HPY08_RS09365	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
HPY08_RS09365	COG0047	phosphoribosylformylglycinamidine synthase activity
HPY08_RS09375	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
HPY08_RS09385	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
HPY08_RS09415	COG0484	heat shock protein binding
HPY08_RS09420	COG0443	Heat shock 70 kDa protein
HPY08_RS09425	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
HPY08_RS09430	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
HPY08_RS09435	COG0497	DNA recombination
HPY08_RS09440	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
HPY08_RS09445	COG2914	Belongs to the UPF0125 (RnfH) family
HPY08_RS09450	COG2867	negative regulation of translational initiation
HPY08_RS09455	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
HPY08_RS09485	COG0514	ATP-dependent DNA helicase (RecQ)
HPY08_RS09505	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
HPY08_RS09510	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
HPY08_RS09515	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
HPY08_RS09535	COG3051	citrate lyase alpha subunit
HPY08_RS09540	COG2301	Belongs to the HpcH HpaI aldolase family
HPY08_RS09550	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
HPY08_RS09560	COG3630	sodium ion export across plasma membrane
HPY08_RS09565	COG5016	pyruvate
HPY08_RS09565	COG0511	ligase activity, forming carbon-carbon bonds
HPY08_RS09570	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
HPY08_RS09580	COG4565	transcriptional regulatory protein
HPY08_RS09605	COG1115	amino acid carrier protein
HPY08_RS09610	COG2015	COG2015, Alkyl sulfatase and related hydrolases
HPY08_RS09615	COG0583	DNA-binding transcription factor activity
HPY08_RS09625	COG1120	ATPase activity
HPY08_RS09630	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
HPY08_RS09635	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
HPY08_RS09640	COG4592	Periplasmic binding protein
HPY08_RS09650	COG1028	Short-chain dehydrogenase reductase Sdr
HPY08_RS09655	COG1169	isochorismate synthase
HPY08_RS09660	COG1021	2,3-dihydroxybenzoate-AMP ligase
HPY08_RS09665	COG3433	isochorismatase activity
HPY08_RS09665	COG1535	isochorismatase
HPY08_RS09670	COG1584	GPR1 FUN34 yaaH family protein
HPY08_RS09680	COG3023	N-Acetylmuramoyl-L-alanine amidase
HPY08_RS09690	COG0519	Catalyzes the synthesis of GMP from XMP
HPY08_RS09690	COG0518	GMP synthase (glutamine-hydrolyzing) activity
HPY08_RS09695	COG0516	GMP reductase activity
HPY08_RS09695	COG0517	IMP dehydrogenase activity
HPY08_RS09700	COG1570	exodeoxyribonuclease VII activity
HPY08_RS09715	COG1160	GTP binding
HPY08_RS09720	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
HPY08_RS09725	COG2976	Protein conserved in bacteria
HPY08_RS09730	COG0124	histidyl-tRNA synthetase
HPY08_RS09735	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
HPY08_RS09745	COG0820	rRNA (adenine-C2-)-methyltransferase activity
HPY08_RS09750	COG0105	UTP biosynthetic process
HPY08_RS09755	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
HPY08_RS09760	COG2975	iron-sulfur cluster assembly
HPY08_RS09765	COG0633	Ferredoxin
HPY08_RS09785	COG0822	iron-sulfur transferase activity
HPY08_RS09795	COG1959	2 iron, 2 sulfur cluster binding
HPY08_RS09805	COG0483	inositol monophosphate 1-phosphatase activity
HPY08_RS09810	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
HPY08_RS09815	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
HPY08_RS09820	COG1862	Preprotein translocase
HPY08_RS09830	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
HPY08_RS09835	COG0517	IMP dehydrogenase activity
HPY08_RS09845	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
HPY08_RS09850	COG0583	DNA-binding transcription factor activity
HPY08_RS09855	COG0450	alkyl hydroperoxide reductase
HPY08_RS09860	COG3142	Participates in the control of copper homeostasis
HPY08_RS09875	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
HPY08_RS09880	COG0581	inorganic phosphate transmembrane transporter activity
HPY08_RS09890	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
HPY08_RS09895	COG0248	Ppx GppA phosphatase
HPY08_RS09905	COG5002	protein histidine kinase activity
HPY08_RS09910	COG0745	RESPONSE REGULATOR receiver
HPY08_RS09925	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
HPY08_RS09970	COG0542	response to heat
HPY08_RS09980	COG0564	pseudouridine synthase activity
HPY08_RS09985	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
HPY08_RS09990	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
HPY08_RS09995	COG1605	Chorismate mutase
HPY08_RS09995	COG0077	Prephenate dehydratase
HPY08_RS10000	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
HPY08_RS10005	COG5001	Diguanylate cyclase
HPY08_RS10015	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
HPY08_RS10025	COG0488	(ABC) transporter
HPY08_RS10035	COG0287	Prephenate dehydrogenase
HPY08_RS10035	COG1605	Chorismate mutase
HPY08_RS10040	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
HPY08_RS10045	COG3275	phosphorelay sensor kinase activity
HPY08_RS10050	COG3279	Response regulator of the LytR AlgR family
HPY08_RS10060	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
HPY08_RS10065	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
HPY08_RS10080	COG1966	Carbon starvation protein
HPY08_RS10085	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
HPY08_RS10090	COG1047	Peptidyl-prolyl cis-trans
HPY08_RS10095	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
HPY08_RS10105	COG0196	riboflavin kinase activity
HPY08_RS10110	COG0728	peptidoglycan biosynthetic process
HPY08_RS10115	COG0268	Binds directly to 16S ribosomal RNA
HPY08_RS10120	COG0640	Transcriptional regulator
HPY08_RS10125	COG0583	DNA-binding transcription factor activity
HPY08_RS10130	COG1283	sodium-dependent phosphate transmembrane transporter activity
HPY08_RS10135	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
HPY08_RS10140	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
HPY08_RS10145	COG0730	response to heat
HPY08_RS10150	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
HPY08_RS10155	COG0494	nUDIX hydrolase
HPY08_RS10160	COG3066	DNA modification
HPY08_RS10165	COG0667	Aldo Keto reductase
HPY08_RS10175	COG2204	response regulator
HPY08_RS10180	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
HPY08_RS10200	COG0513	Belongs to the DEAD box helicase family
HPY08_RS10225	COG3153	acetyltransferase
HPY08_RS10230	COG3154	lipid carrier protein
HPY08_RS10240	COG0826	peptidase U32
HPY08_RS10245	COG0826	peptidase U32
HPY08_RS10270	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
HPY08_RS10280	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
HPY08_RS10285	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
HPY08_RS10290	COG0195	Participates in both transcription termination and antitermination
HPY08_RS10295	COG0779	Required for maturation of 30S ribosomal subunits
HPY08_RS10310	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
HPY08_RS10320	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
HPY08_RS10325	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
HPY08_RS10330	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
HPY08_RS10335	COG1534	Rna-binding protein
HPY08_RS10340	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
HPY08_RS10345	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
HPY08_RS10350	COG2027	D-alanyl-D-alanine carboxypeptidase
HPY08_RS10355	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
HPY08_RS10360	COG0739	heme binding
HPY08_RS10375	COG0316	Belongs to the HesB IscA family
HPY08_RS10380	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
HPY08_RS10385	COG0628	permease
HPY08_RS10390	COG2813	Specifically methylates the guanine in position
HPY08_RS10395	COG0784	Response regulator, receiver
HPY08_RS10395	COG2205	protein histidine kinase activity
HPY08_RS10400	COG0747	negative chemotaxis
HPY08_RS10410	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
HPY08_RS10415	COG0444	Belongs to the ABC transporter superfamily
HPY08_RS10420	COG4608	Belongs to the ABC transporter superfamily
HPY08_RS10430	COG2971	BadF BadG BcrA BcrD
HPY08_RS10450	COG3842	ATPase activity
HPY08_RS10460	COG1840	ABC-type Fe3 transport system, periplasmic component
HPY08_RS10465	COG0004	ammonium transporteR
HPY08_RS10470	COG0347	Belongs to the P(II) protein family
HPY08_RS10475	COG3112	Uncharacterised protein family (UPF0231)
HPY08_RS10480	COG1049	propionate catabolic process, 2-methylcitrate cycle
HPY08_RS10485	COG1752	Esterase of the alpha-beta hydrolase superfamily
HPY08_RS10490	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
HPY08_RS10495	COG1643	Atp-dependent helicase
HPY08_RS10505	COG1489	DNA binding
HPY08_RS10515	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
HPY08_RS10525	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
HPY08_RS10530	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
HPY08_RS10535	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
HPY08_RS10540	COG0842	Transport permease protein
HPY08_RS10545	COG1131	(ABC) transporter
HPY08_RS10550	COG0659	secondary active sulfate transmembrane transporter activity
HPY08_RS10555	COG0288	reversible hydration of carbon dioxide
HPY08_RS10570	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
HPY08_RS10575	COG3107	peptidoglycan biosynthetic process
HPY08_RS10580	COG0792	nuclease activity
HPY08_RS10585	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
HPY08_RS10590	COG2823	Periplasmic or secreted lipoprotein
HPY08_RS10595	COG2969	positive regulation of protein catabolic process
HPY08_RS10600	COG0625	glutathione transferase activity
HPY08_RS10605	COG2857	Cytochrome c1
HPY08_RS10610	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
HPY08_RS10615	COG0723	plastoquinol--plastocyanin reductase activity
HPY08_RS10620	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
HPY08_RS10625	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
HPY08_RS10630	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
HPY08_RS10640	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
HPY08_RS10645	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
HPY08_RS10650	COG0335	large ribosomal subunit rRNA binding
HPY08_RS10655	COG0336	Belongs to the RNA methyltransferase TrmD family
HPY08_RS10660	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
HPY08_RS10665	COG0228	four-way junction DNA binding
HPY08_RS10670	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
HPY08_RS10675	COG4137	Cytochrome C assembly protein
HPY08_RS10680	COG4536	flavin adenine dinucleotide binding
HPY08_RS10685	COG1854	S-ribosylhomocysteine lyase activity
HPY08_RS10690	COG2918	glutathione biosynthetic process
HPY08_RS10695	COG0612	Peptidase, M16
HPY08_RS10700	COG1238	metal cluster binding
HPY08_RS10710	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
HPY08_RS10715	COG5016	pyruvate
HPY08_RS10715	COG0511	ligase activity, forming carbon-carbon bonds
HPY08_RS10720	COG3630	sodium ion export across plasma membrane
HPY08_RS10765	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
HPY08_RS10770	COG0527	aspartate kinase activity
HPY08_RS10775	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
HPY08_RS10785	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
HPY08_RS10795	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
HPY08_RS10800	COG4208	sulfate ABC transporter
HPY08_RS10820	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
HPY08_RS10825	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
HPY08_RS10835	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
HPY08_RS10840	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
HPY08_RS10845	COG0585	pseudouridine synthase activity
HPY08_RS10850	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
HPY08_RS10855	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
HPY08_RS10860	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
HPY08_RS10865	COG1968	undecaprenyl-diphosphatase activity
HPY08_RS10870	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
HPY08_RS10875	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
HPY08_RS10880	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
HPY08_RS10890	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
HPY08_RS10895	COG0828	Belongs to the bacterial ribosomal protein bS21 family
HPY08_RS10900	COG1610	YqeY-like protein
HPY08_RS10905	COG0358	DNA primase activity
HPY08_RS10925	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
HPY08_RS10930	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
HPY08_RS10935	COG1349	DNA-binding transcription factor activity
HPY08_RS10955	COG1279	arginine transmembrane transporter activity
HPY08_RS10960	COG0668	transmembrane transport
HPY08_RS10965	COG0191	fructose-bisphosphate aldolase activity
HPY08_RS10970	COG0126	phosphoglycerate kinase activity
HPY08_RS10975	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
HPY08_RS10980	COG4771	TonB-dependent receptor
HPY08_RS10985	COG0583	DNA-binding transcription factor activity
HPY08_RS10990	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
HPY08_RS10995	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
HPY08_RS11000	COG3091	SprT-like family
HPY08_RS11005	COG2356	endonuclease I
HPY08_RS11010	COG1385	rRNA (uridine-N3-)-methyltransferase activity
HPY08_RS11015	COG0189	ligase activity
HPY08_RS11020	COG1678	Uncharacterized ACR, COG1678
HPY08_RS11025	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
HPY08_RS11030	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
HPY08_RS11050	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
HPY08_RS11055	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
HPY08_RS11060	COG0762	integral membrane protein
HPY08_RS11075	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
HPY08_RS11080	COG0635	Involved in the biosynthesis of porphyrin-containing compound
HPY08_RS11085	COG2066	Belongs to the glutaminase family
HPY08_RS11090	COG0220	tRNA (guanine-N7-)-methyltransferase activity
HPY08_RS11095	COG1194	a g-specific adenine glycosylase
HPY08_RS11100	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
HPY08_RS11105	COG0741	lytic transglycosylase activity
HPY08_RS11160	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
HPY08_RS11165	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
HPY08_RS11170	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
HPY08_RS11175	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
HPY08_RS11180	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
HPY08_RS11185	COG2967	ApaG domain
HPY08_RS11190	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
HPY08_RS11200	COG3610	response to peptide
HPY08_RS11205	COG2966	Psort location CytoplasmicMembrane, score
HPY08_RS11210	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
HPY08_RS11215	COG0211	Belongs to the bacterial ribosomal protein bL27 family
HPY08_RS11220	COG0261	This protein binds to 23S rRNA in the presence of protein L20
HPY08_RS11225	COG0142	geranyltranstransferase activity
HPY08_RS11230	COG0531	amino acid
HPY08_RS11235	COG0039	L-malate dehydrogenase activity
HPY08_RS11240	COG1438	arginine binding
HPY08_RS11245	COG2358	TRAP transporter, solute receptor (TAXI family
HPY08_RS11255	COG0589	response to stress
HPY08_RS11275	COG2235	arginine
HPY08_RS11280	COG0312	modulator of DNA gyrase
HPY08_RS11285	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
HPY08_RS11290	COG3164	Protein of unknown function
HPY08_RS11295	COG1530	ribonuclease E activity
HPY08_RS11300	COG0424	maF-like protein
HPY08_RS11305	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
HPY08_RS11310	COG1792	Involved in formation and maintenance of cell shape
HPY08_RS11315	COG1077	Cell shape determining protein MreB Mrl
HPY08_RS11360	COG1459	type II secretion system
HPY08_RS11365	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
HPY08_RS11375	COG3267	Type II secretory pathway component ExeA
HPY08_RS11375	COG3409	Peptidoglycan-binding domain 1 protein
HPY08_RS11400	COG2199	diguanylate cyclase activity
HPY08_RS11400	COG2200	EAL domain
HPY08_RS11405	COG0629	single-stranded DNA binding
HPY08_RS11420	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
HPY08_RS11430	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
HPY08_RS11435	COG0527	aspartate kinase activity
HPY08_RS11440	COG0646	methionine synthase
HPY08_RS11440	COG1410	methionine synthase
HPY08_RS11515	COG0175	sulfate reduction
HPY08_RS11525	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
HPY08_RS11550	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
HPY08_RS11555	COG0735	belongs to the Fur family
HPY08_RS11570	COG0166	Belongs to the GPI family
HPY08_RS11575	COG0432	Pfam Uncharacterised protein family UPF0047
HPY08_RS11580	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
HPY08_RS11595	COG0359	binds to the 23S rRNA
HPY08_RS11600	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
HPY08_RS11605	COG2965	DNA replication, synthesis of RNA primer
HPY08_RS11610	COG0360	Binds together with S18 to 16S ribosomal RNA
HPY08_RS11620	COG2906	2 iron, 2 sulfur cluster binding
HPY08_RS11625	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
HPY08_RS11630	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
HPY08_RS11635	COG0049	tRNA binding
HPY08_RS11650	COG2923	Belongs to the DsrF TusC family
HPY08_RS11655	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
HPY08_RS11660	COG2964	Protein conserved in bacteria
HPY08_RS11665	COG0545	Peptidyl-prolyl cis-trans isomerase
HPY08_RS11675	COG2900	Belongs to the SlyX family
HPY08_RS11680	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
HPY08_RS11685	COG0330	HflC and HflK could
HPY08_RS11690	COG0330	HflC and HflK could
HPY08_RS11695	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
HPY08_RS11700	COG1923	regulation of RNA biosynthetic process
HPY08_RS11705	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
HPY08_RS11710	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
HPY08_RS11720	COG0802	atpase or kinase
HPY08_RS11725	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
HPY08_RS11770	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
HPY08_RS11775	COG1162	GTPase activity
HPY08_RS11780	COG0688	phosphatidylethanolamine metabolic process
HPY08_RS11785	COG0471	metal ion transport
HPY08_RS11795	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
HPY08_RS11800	COG4942	peptidase
HPY08_RS11815	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
HPY08_RS11820	COG2816	NAD+ diphosphatase activity
HPY08_RS11825	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
HPY08_RS11830	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
HPY08_RS11835	COG0085	RNA polymerase activity
HPY08_RS11840	COG0222	ribosome binding
HPY08_RS11845	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
HPY08_RS11855	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
HPY08_RS11860	COG0250	Participates in transcription elongation, termination and antitermination
HPY08_RS11865	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
HPY08_RS11870	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
HPY08_RS11895	COG1072	(Pantothenic acid kinase))
HPY08_RS11905	COG0812	UDP-N-acetylmuramate dehydrogenase activity
HPY08_RS11915	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
HPY08_RS11960	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
HPY08_RS11975	COG3118	belongs to the thioredoxin family
HPY08_RS11980	COG0513	Belongs to the DEAD box helicase family
HPY08_RS11985	COG0248	Ppx GppA phosphatase
HPY08_RS11990	COG0784	Response regulator, receiver
HPY08_RS11990	COG2205	protein histidine kinase activity
HPY08_RS11995	COG2814	Major facilitator Superfamily
HPY08_RS12010	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
HPY08_RS12015	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
HPY08_RS12020	COG0511	ligase activity, forming carbon-carbon bonds
HPY08_RS12025	COG0439	Biotin carboxylase
HPY08_RS12030	COG2264	protein methyltransferase activity
HPY08_RS12035	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
HPY08_RS12040	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
HPY08_RS12045	COG1609	Transcriptional regulator
HPY08_RS12060	COG0129	dihydroxy-acid dehydratase activity
HPY08_RS12065	COG3265	gluconokinase activity
HPY08_RS12075	COG0800	Aldolase
HPY08_RS12095	COG0840	transmembrane signaling receptor activity
HPY08_RS12100	COG1982	Orn Lys Arg decarboxylase major
HPY08_RS12105	COG0531	amino acid
HPY08_RS12110	COG3710	Transcriptional regulator
HPY08_RS12115	COG0789	Transcriptional regulator
HPY08_RS12130	COG0151	Belongs to the GarS family
HPY08_RS12140	COG0776	regulation of translation
HPY08_RS12145	COG1253	flavin adenine dinucleotide binding
HPY08_RS12155	COG3068	Protein conserved in bacteria
HPY08_RS12165	COG1573	uracil-dna glycosylase
HPY08_RS12170	COG0668	transmembrane transport
HPY08_RS12175	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
HPY08_RS12185	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
HPY08_RS12195	COG0297	glycogen (starch) synthase activity
HPY08_RS12205	COG0463	Glycosyl transferase, family 2
HPY08_RS12205	COG1216	Glycosyl transferase, family 2
HPY08_RS12230	COG1596	polysaccharide export
HPY08_RS12250	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
HPY08_RS12330	COG1216	Glycosyl transferase, family 2
HPY08_RS12375	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
HPY08_RS12395	COG0859	PFAM glycosyl transferase family 9
HPY08_RS12405	COG1519	Transferase
HPY08_RS12410	COG0456	acetyltransferase
HPY08_RS12415	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
HPY08_RS12430	COG3642	lipopolysaccharide core region biosynthetic process
HPY08_RS12435	COG0859	PFAM glycosyl transferase family 9
HPY08_RS12440	COG0463	Glycosyl transferase, family 2
HPY08_RS12445	COG0859	PFAM glycosyl transferase family 9
HPY08_RS12450	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
HPY08_RS12455	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
HPY08_RS12465	COG0267	Belongs to the bacterial ribosomal protein bL33 family
HPY08_RS12470	COG0227	Belongs to the bacterial ribosomal protein bL28 family
HPY08_RS12475	COG2003	Belongs to the UPF0758 family
HPY08_RS12485	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
HPY08_RS12495	COG1309	transcriptional regulator
HPY08_RS12500	COG1560	Kdo2-lipid A biosynthetic process
HPY08_RS12505	COG1560	Kdo2-lipid A biosynthetic process
HPY08_RS12510	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
HPY08_RS12515	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
HPY08_RS12520	COG1561	YicC-like family, N-terminal region
HPY08_RS12525	COG2862	Uncharacterized protein family, UPF0114
HPY08_RS12530	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
HPY08_RS12530	COG1263	PTS System
HPY08_RS12535	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
HPY08_RS12545	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
HPY08_RS12575	COG0514	ATP-dependent DNA helicase (RecQ)
HPY08_RS12580	COG2962	Rard protein
HPY08_RS12585	COG0405	Gamma-glutamyltransferase
HPY08_RS12595	COG1280	lysine exporter protein (LysE YggA)
HPY08_RS12600	COG0210	DNA helicase
HPY08_RS12610	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
HPY08_RS12615	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
HPY08_RS12625	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
HPY08_RS12635	COG0747	negative chemotaxis
HPY08_RS12685	COG1309	transcriptional regulator
HPY08_RS12690	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
HPY08_RS12695	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
HPY08_RS12700	COG2960	long-chain fatty acid transporting porin activity
HPY08_RS12705	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
HPY08_RS12710	COG0583	DNA-binding transcription factor activity
HPY08_RS12780	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
HPY08_RS12785	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
HPY08_RS12790	COG1739	Uncharacterized protein family UPF0029
HPY08_RS12795	COG1250	3-hydroxyacyl-CoA dehydrogenase
HPY08_RS12795	COG1024	Enoyl-CoA hydratase
HPY08_RS12800	COG0183	Belongs to the thiolase family
HPY08_RS12805	COG0583	DNA-binding transcription factor activity
HPY08_RS12810	COG2814	Major facilitator Superfamily
HPY08_RS12820	COG0355	proton-transporting ATP synthase activity, rotational mechanism
HPY08_RS12825	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
HPY08_RS12830	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
HPY08_RS12835	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
HPY08_RS12840	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
HPY08_RS12845	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
HPY08_RS12855	COG0356	it plays a direct role in the translocation of protons across the membrane
HPY08_RS12860	COG3312	ion transport
HPY08_RS12865	COG1475	DNA binding
HPY08_RS12870	COG1192	Involved in chromosome partitioning
HPY08_RS12875	COG0357	Ribosomal RNA small subunit methyltransferase G
HPY08_RS12880	COG0445	tRNA wobble uridine modification
HPY08_RS12885	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
HPY08_RS12890	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
HPY08_RS12895	COG0706	membrane insertase activity
HPY08_RS12905	COG0594	ribonuclease P activity
HPY08_RS12910	COG0230	Belongs to the bacterial ribosomal protein bL34 family
HPY08_RS12915	COG1126	abc transporter atp-binding protein
HPY08_RS12960	COG0217	transcriptional regulatory protein
HPY08_RS12965	COG2084	Dehydrogenase
HPY08_RS12980	COG2909	trisaccharide binding
HPY08_RS12985	COG0058	SHG alpha-glucan phosphorylase activity
HPY08_RS12990	COG1640	4-alpha-glucanotransferase
HPY08_RS12995	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
HPY08_RS13005	COG3501	Rhs element vgr protein
HPY08_RS13040	COG0471	metal ion transport
HPY08_RS13045	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
HPY08_RS13075	COG0671	phosphoesterase, PA-phosphatase related
HPY08_RS13085	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
HPY08_RS13095	COG1999	signal sequence binding
HPY08_RS13110	COG0786	glutamate:sodium symporter activity
HPY08_RS13130	COG1566	PFAM secretion protein HlyD family protein
HPY08_RS13140	COG3706	GGDEF domain
HPY08_RS13155	COG0813	purine-nucleoside phosphorylase activity
HPY08_RS13160	COG3272	Protein of unknown function (DUF1722)
HPY08_RS13170	COG0415	Belongs to the DNA photolyase family
HPY08_RS13175	COG1388	LysM domain
HPY08_RS13175	COG1376	ErfK ybiS ycfS ynhG family protein
HPY08_RS13185	COG0513	Belongs to the DEAD box helicase family
HPY08_RS13190	COG1770	oligopeptidase
HPY08_RS13220	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
HPY08_RS13225	COG0573	inorganic phosphate transmembrane transporter activity
HPY08_RS13230	COG0581	inorganic phosphate transmembrane transporter activity
HPY08_RS13235	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
HPY08_RS13255	COG0659	secondary active sulfate transmembrane transporter activity
HPY08_RS13265	COG0739	heme binding
HPY08_RS13270	COG5001	Diguanylate cyclase
HPY08_RS13270	COG3300	MHYT domain
HPY08_RS13275	COG0583	DNA-binding transcription factor activity
HPY08_RS13280	COG2814	Major facilitator Superfamily
HPY08_RS13300	COG1301	dicarboxylic acid transport
HPY08_RS13310	COG1342	Belongs to the UPF0251 family
HPY08_RS13345	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
HPY08_RS13350	COG0673	inositol 2-dehydrogenase activity
HPY08_RS13360	COG2771	luxR family
HPY08_RS13360	COG2200	EAL domain
HPY08_RS13365	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
HPY08_RS13375	COG0564	pseudouridine synthase activity
HPY08_RS13465	COG3501	Rhs element vgr protein
HPY08_RS13485	COG1869	D-ribose catabolic process
HPY08_RS13490	COG1129	ABC transporter
HPY08_RS13495	COG1172	Belongs to the binding-protein-dependent transport system permease family
HPY08_RS13500	COG1879	ABC-type sugar transport system periplasmic component
HPY08_RS13505	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
HPY08_RS13510	COG1609	Transcriptional regulator
HPY08_RS13520	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
HPY08_RS13530	COG0584	glycerophosphoryl diester phosphodiesterase
HPY08_RS13535	COG2271	Major facilitator Superfamily
HPY08_RS13570	COG0579	oxidoreductase
HPY08_RS13580	COG0242	peptide deformylase activity
HPY08_RS13595	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
HPY08_RS13600	COG1609	Transcriptional regulator
HPY08_RS13605	COG1017	nitric oxide dioxygenase activity
HPY08_RS13605	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
HPY08_RS13610	COG1320	monovalent cation:proton antiporter activity
HPY08_RS13615	COG2212	antiporter activity
HPY08_RS13635	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
HPY08_RS13635	COG2111	Na H antiporter
HPY08_RS13645	COG0589	response to stress
HPY08_RS13650	COG0814	amino acid
HPY08_RS13665	COG3530	Putative quorum-sensing-regulated virulence factor
HPY08_RS13675	COG5001	Diguanylate cyclase
HPY08_RS13675	COG5002	protein histidine kinase activity
HPY08_RS13680	COG1278	Cold shock
HPY08_RS13695	COG2304	oxidoreductase activity
HPY08_RS13715	COG0714	Associated with various cellular activities
HPY08_RS13720	COG0840	transmembrane signaling receptor activity
HPY08_RS13735	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
HPY08_RS13740	COG2195	Cleaves the N-terminal amino acid of tripeptides
HPY08_RS13750	COG3604	Transcriptional regulator
HPY08_RS13755	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
HPY08_RS13755	COG1017	nitric oxide dioxygenase activity
HPY08_RS13760	COG1278	Cold shock
HPY08_RS13765	COG3036	rescue of stalled ribosome
HPY08_RS13790	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
HPY08_RS13790	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
HPY08_RS13795	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
HPY08_RS13805	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
HPY08_RS13815	COG0516	GMP reductase activity
HPY08_RS13845	COG0513	Belongs to the DEAD box helicase family
HPY08_RS13850	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
HPY08_RS13855	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
HPY08_RS13860	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
HPY08_RS13865	COG3437	response regulator, receiver
HPY08_RS13865	COG0784	Response regulator, receiver
HPY08_RS13875	COG4191	Histidine kinase
HPY08_RS13875	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
HPY08_RS13885	COG1757	Na H antiporter
HPY08_RS13890	COG2814	Major facilitator Superfamily
HPY08_RS13900	COG3240	lipase activity
HPY08_RS13910	COG0840	transmembrane signaling receptor activity
HPY08_RS13915	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
HPY08_RS13920	COG5380	lipid catabolic process
HPY08_RS13945	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
HPY08_RS13950	COG4605	iron ion homeostasis
HPY08_RS13955	COG4604	ABC transporter, ATP-binding protein
HPY08_RS13960	COG2207	Transcriptional regulator
HPY08_RS13975	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
HPY08_RS13990	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
HPY08_RS13995	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
HPY08_RS14035	COG0583	DNA-binding transcription factor activity
HPY08_RS14050	COG0745	RESPONSE REGULATOR receiver
HPY08_RS14080	COG3623	hexulose-6-phosphate isomerase
HPY08_RS14085	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
HPY08_RS14090	COG0561	phosphatase activity
HPY08_RS14135	COG1335	isochorismatase
HPY08_RS14140	COG1741	Belongs to the pirin family
HPY08_RS14145	COG0583	DNA-binding transcription factor activity
HPY08_RS14150	COG0366	Alpha amylase catalytic
HPY08_RS14170	COG0745	RESPONSE REGULATOR receiver
HPY08_RS14175	COG5002	protein histidine kinase activity
HPY08_RS14200	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
HPY08_RS14215	COG0583	DNA-binding transcription factor activity
HPY08_RS14230	COG1686	Belongs to the peptidase S11 family
HPY08_RS14250	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
HPY08_RS14250	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
HPY08_RS14255	COG0509	glycine decarboxylation via glycine cleavage system
HPY08_RS14260	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
HPY08_RS14270	COG0404	The glycine cleavage system catalyzes the degradation of glycine
HPY08_RS14285	COG0291	Belongs to the bacterial ribosomal protein bL35 family
HPY08_RS14290	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
HPY08_RS14335	COG3041	Addiction module toxin RelE StbE family
HPY08_RS14375	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
HPY08_RS14445	COG0456	acetyltransferase
HPY08_RS14450	COG3617	BRO family, N-terminal domain
HPY08_RS14460	COG0346	lactoylglutathione lyase activity
HPY08_RS14515	COG0454	-acetyltransferase
HPY08_RS14555	COG0494	nUDIX hydrolase
HPY08_RS14600	COG0456	acetyltransferase
HPY08_RS14620	COG0346	lactoylglutathione lyase activity
HPY08_RS14645	COG0346	lactoylglutathione lyase activity
HPY08_RS14670	COG0456	acetyltransferase
HPY08_RS14735	COG1619	proteins homologs of microcin C7 resistance protein MccF
HPY08_RS14785	COG0454	-acetyltransferase
HPY08_RS14815	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
HPY08_RS14845	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
HPY08_RS14940	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
HPY08_RS14960	COG1418	mRNA catabolic process
HPY08_RS15020	COG0454	-acetyltransferase
HPY08_RS15140	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
HPY08_RS15220	COG0384	phenazine biosynthesis protein PhzF
HPY08_RS15260	COG2161	toxin-antitoxin pair type II binding
HPY08_RS15265	COG4115	mRNA cleavage
HPY08_RS15420	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
HPY08_RS15485	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
HPY08_RS15510	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
HPY08_RS15565	COG3041	Addiction module toxin RelE StbE family
HPY08_RS15645	COG0384	phenazine biosynthesis protein PhzF
HPY08_RS15695	COG0494	nUDIX hydrolase
HPY08_RS15760	COG0346	lactoylglutathione lyase activity
HPY08_RS15790	COG3549	Plasmid maintenance system killer
HPY08_RS15795	COG3093	addiction module antidote protein HigA
HPY08_RS15825	COG5642	Protein of unknown function (DUF2384)
HPY08_RS15845	COG0545	Peptidyl-prolyl cis-trans isomerase
HPY08_RS15850	COG2885	chlorophyll binding
HPY08_RS15855	COG0840	transmembrane signaling receptor activity
HPY08_RS15860	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
HPY08_RS15865	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
HPY08_RS15870	COG1621	beta-fructofuranosidase activity
HPY08_RS15880	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
HPY08_RS15880	COG1263	PTS System
HPY08_RS15965	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
HPY08_RS15970	COG0583	DNA-binding transcription factor activity
HPY08_RS15995	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
HPY08_RS16020	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
HPY08_RS16030	COG2390	Transcriptional regulator
HPY08_RS16035	COG2897	thiosulfate sulfurtransferase activity
HPY08_RS16045	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
HPY08_RS16055	COG0302	gtp cyclohydrolase
HPY08_RS16060	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
HPY08_RS16060	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
HPY08_RS16065	COG2759	Belongs to the formate--tetrahydrofolate ligase family
HPY08_RS16070	COG1970	mechanosensitive ion channel activity
HPY08_RS16075	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
HPY08_RS16085	COG1011	Hydrolase
HPY08_RS16090	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
HPY08_RS16095	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
HPY08_RS16110	COG1840	ABC-type Fe3 transport system, periplasmic component
HPY08_RS16115	COG3842	ATPase activity
HPY08_RS16135	COG3104	oligopeptide transport
HPY08_RS16160	COG4166	transmembrane transport
HPY08_RS16165	COG4174	ABC transporter (Permease)
HPY08_RS16170	COG4239	(ABC) transporter, permease
HPY08_RS16175	COG4172	Belongs to the ABC transporter superfamily
HPY08_RS16180	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
HPY08_RS16195	COG0625	glutathione transferase activity
HPY08_RS16215	COG2050	protein possibly involved in aromatic compounds catabolism
HPY08_RS16230	COG1629	transport
HPY08_RS16230	COG4771	TonB-dependent receptor
HPY08_RS16235	COG0583	DNA-binding transcription factor activity
HPY08_RS16240	COG1042	CoA-binding domain protein
HPY08_RS16240	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
HPY08_RS16240	COG0045	succinate-CoA ligase (ADP-forming) activity
HPY08_RS16260	COG0023	Translation Initiation Factor
HPY08_RS16270	COG3501	Rhs element vgr protein
HPY08_RS16305	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
HPY08_RS16310	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
HPY08_RS16370	COG0455	bacterial-type flagellum organization
HPY08_RS16375	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
HPY08_RS16375	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
HPY08_RS16390	COG1061	Type III restriction enzyme res subunit
HPY08_RS16415	COG3140	Belongs to the UPF0181 family
HPY08_RS16430	COG0745	RESPONSE REGULATOR receiver
HPY08_RS16440	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
HPY08_RS16445	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
HPY08_RS16460	COG3706	GGDEF domain
HPY08_RS16510	COG2824	Alkylphosphonate utilization operon protein PhnA
HPY08_RS16530	COG0737	Belongs to the 5'-nucleotidase family
HPY08_RS16535	COG3593	DNA synthesis involved in DNA repair
HPY08_RS16545	COG0583	DNA-binding transcription factor activity
HPY08_RS16550	COG2116	formate transmembrane transporter activity
HPY08_RS16560	COG3038	cytochrome b561
HPY08_RS16570	COG2200	EAL domain
HPY08_RS16585	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
HPY08_RS16590	COG0745	RESPONSE REGULATOR receiver
HPY08_RS16595	COG2205	protein histidine kinase activity
HPY08_RS16600	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
HPY08_RS16600	COG0674	pyruvate-flavodoxin oxidoreductase activity
HPY08_RS16600	COG1013	pyruvate-flavodoxin oxidoreductase activity
HPY08_RS16600	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
HPY08_RS16605	COG3158	transport of potassium into the cell
HPY08_RS16615	COG0523	cobalamin synthesis protein
HPY08_RS16620	COG0038	chloride channel
HPY08_RS16630	COG0156	8-amino-7-oxononanoate synthase activity
HPY08_RS16635	COG0784	Response regulator, receiver
HPY08_RS16635	COG2205	protein histidine kinase activity
HPY08_RS16640	COG0419	ATPase involved in DNA repair
HPY08_RS16645	COG0420	3'-5' exonuclease activity
HPY08_RS16650	COG1609	Transcriptional regulator
HPY08_RS16655	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
HPY08_RS16655	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
HPY08_RS16660	COG1105	Belongs to the carbohydrate kinase PfkB family
HPY08_RS16665	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
HPY08_RS16665	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
HPY08_RS16665	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
HPY08_RS16670	COG0189	ligase activity
HPY08_RS16670	COG4067	protein conserved in archaea
HPY08_RS16680	COG0602	queuosine metabolic process
HPY08_RS16685	COG1328	CTP reductase activity
HPY08_RS16695	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
HPY08_RS16700	COG0840	transmembrane signaling receptor activity
HPY08_RS16705	COG3069	C4-dicarboxylate transmembrane transporter activity
HPY08_RS16710	COG1760	l-serine dehydratase
HPY08_RS16715	COG2197	response regulator
HPY08_RS16720	COG3850	Histidine kinase
HPY08_RS16725	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
HPY08_RS16735	COG0243	molybdopterin cofactor binding
HPY08_RS16755	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
HPY08_RS16760	COG2197	response regulator
HPY08_RS16765	COG3851	Histidine kinase
HPY08_RS16770	COG2271	Major facilitator Superfamily
HPY08_RS16775	COG1840	ABC-type Fe3 transport system, periplasmic component
HPY08_RS16785	COG3842	ATPase activity
HPY08_RS16790	COG3243	poly(R)-hydroxyalkanoic acid synthase
HPY08_RS16800	COG0183	Belongs to the thiolase family
HPY08_RS16815	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
HPY08_RS16830	COG3706	GGDEF domain
HPY08_RS16835	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
HPY08_RS16845	COG1979	alcohol dehydrogenase
HPY08_RS16860	COG4191	Histidine kinase
HPY08_RS16870	COG2271	Major facilitator Superfamily
HPY08_RS16875	COG0469	pyruvate kinase activity
HPY08_RS16880	COG2205	protein histidine kinase activity
HPY08_RS16880	COG2198	Histidine kinase
HPY08_RS16880	COG0784	Response regulator, receiver
HPY08_RS16885	COG1879	ABC-type sugar transport system periplasmic component
HPY08_RS16890	COG1803	Methylglyoxal synthase
HPY08_RS16895	COG1335	isochorismatase
HPY08_RS16900	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
HPY08_RS16905	COG0210	DNA helicase
HPY08_RS16910	COG1289	transmembrane transporter activity
HPY08_RS16940	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
HPY08_RS16945	COG4149	molybdate abc transporter
HPY08_RS16950	COG0725	ABC transporter, periplasmic molybdate-binding protein
HPY08_RS16955	COG1492	cobalamin metabolic process
HPY08_RS16995	COG4977	sequence-specific DNA binding
HPY08_RS16995	COG1917	Cupin 2, conserved barrel domain protein
HPY08_RS17000	COG4771	TonB-dependent receptor
HPY08_RS17005	COG2814	Major facilitator Superfamily
HPY08_RS17010	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
HPY08_RS17010	COG3433	isochorismatase activity
HPY08_RS17010	COG2226	methyltransferase
HPY08_RS17035	COG1021	2,3-dihydroxybenzoate-AMP ligase
HPY08_RS17040	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
HPY08_RS17060	COG1132	(ABC) transporter
HPY08_RS17065	COG1132	(ABC) transporter
HPY08_RS17075	COG0784	Response regulator, receiver
HPY08_RS17075	COG5002	protein histidine kinase activity
HPY08_RS17080	COG1879	ABC-type sugar transport system periplasmic component
HPY08_RS17090	COG2827	Endonuclease containing a URI domain
HPY08_RS17105	COG2926	Belongs to the UPF0265 family
HPY08_RS17120	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
HPY08_RS17125	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
HPY08_RS17130	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
HPY08_RS17135	COG0247	lactate metabolic process
HPY08_RS17140	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
HPY08_RS17145	COG3118	belongs to the thioredoxin family
HPY08_RS17170	COG4160	amino acid transport
HPY08_RS17175	COG4215	(ABC) transporter
HPY08_RS17180	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
HPY08_RS17185	COG1126	abc transporter atp-binding protein
HPY08_RS17195	COG2425	protein containing a von Willebrand factor type A (vWA) domain
HPY08_RS17205	COG0494	nUDIX hydrolase
HPY08_RS17210	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
HPY08_RS17220	COG1309	transcriptional regulator
HPY08_RS17225	COG0513	Belongs to the DEAD box helicase family
HPY08_RS17235	COG0814	amino acid
HPY08_RS17240	COG0840	transmembrane signaling receptor activity
HPY08_RS17245	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
HPY08_RS17250	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
HPY08_RS17255	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
HPY08_RS17260	COG1984	allophanate hydrolase subunit 2
HPY08_RS17275	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
HPY08_RS17280	COG4181	ATPase activity
HPY08_RS17290	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
HPY08_RS17295	COG5001	Diguanylate cyclase
HPY08_RS17295	COG1716	ATPase activity
HPY08_RS17305	COG0484	heat shock protein binding
HPY08_RS17320	COG0546	phosphoglycolate phosphatase activity
HPY08_RS17335	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
HPY08_RS17340	COG1368	sulfuric ester hydrolase activity
HPY08_RS17350	COG0513	Belongs to the DEAD box helicase family
HPY08_RS17365	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
HPY08_RS17375	COG3046	protein related to deoxyribodipyrimidine photolyase
HPY08_RS17380	COG3397	chitin binding
HPY08_RS17385	COG3227	Zinc metalloprotease (Elastase)
HPY08_RS17400	COG1166	arginine decarboxylase activity
HPY08_RS17410	COG2239	Acts as a magnesium transporter
HPY08_RS17420	COG0527	aspartate kinase activity
HPY08_RS17425	COG0662	Cupin 2, conserved barrel domain protein
HPY08_RS17430	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
HPY08_RS17435	COG0456	acetyltransferase
HPY08_RS17440	COG2154	pterin-4-alpha-carbinolamine dehydratase
HPY08_RS17445	COG3186	Phenylalanine-4-hydroxylase
HPY08_RS17450	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
HPY08_RS17465	COG2264	protein methyltransferase activity
HPY08_RS17490	COG1253	flavin adenine dinucleotide binding
HPY08_RS17495	COG1765	OsmC-like protein
HPY08_RS17525	COG1252	NADH dehydrogenase
HPY08_RS17530	COG0531	amino acid
HPY08_RS17535	COG3706	GGDEF domain
HPY08_RS17545	COG4989	oxidoreductase activity
HPY08_RS17550	COG0366	Alpha amylase catalytic
HPY08_RS17560	COG2067	long-chain fatty acid transport protein
HPY08_RS17565	COG2267	carboxylic ester hydrolase activity
HPY08_RS17575	COG3227	Zinc metalloprotease (Elastase)
HPY08_RS17585	COG3047	cAMP biosynthetic process
HPY08_RS17595	COG1686	Belongs to the peptidase S11 family
HPY08_RS17600	COG0557	exoribonuclease II activity
HPY08_RS17605	COG1278	Cold shock
HPY08_RS17615	COG3048	D-serine ammonia-lyase activity
HPY08_RS17620	COG0583	DNA-binding transcription factor activity
HPY08_RS17640	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
HPY08_RS17650	COG1063	alcohol dehydrogenase
HPY08_RS17655	COG0156	8-amino-7-oxononanoate synthase activity
HPY08_RS17675	COG0346	lactoylglutathione lyase activity
HPY08_RS17700	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
HPY08_RS17705	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
HPY08_RS17710	COG0363	glucosamine-6-phosphate deaminase activity
HPY08_RS17715	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
HPY08_RS17740	COG1929	Belongs to the glycerate kinase type-1 family
HPY08_RS17745	COG2610	gluconate transmembrane transporter activity
HPY08_RS17750	COG3835	regulator
HPY08_RS17760	COG0748	coenzyme F420 binding
HPY08_RS17765	COG3721	Heme iron utilization protein
HPY08_RS17775	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
HPY08_RS17780	COG0811	peptide transport
HPY08_RS17785	COG0848	biopolymer transport protein
HPY08_RS17795	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
HPY08_RS17800	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
HPY08_RS17835	COG0633	Ferredoxin
HPY08_RS17835	COG3217	Mosc domain protein beta barrel domain protein
HPY08_RS17835	COG0633	Ferredoxin
HPY08_RS17835	COG3217	Mosc domain protein beta barrel domain protein
HPY08_RS17840	COG0418	dihydroorotase activity
HPY08_RS17845	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
HPY08_RS17850	COG2354	Protein conserved in bacteria
HPY08_RS17860	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
HPY08_RS17865	COG1278	Cold shock
HPY08_RS17890	COG3706	GGDEF domain
HPY08_RS17895	COG1349	DNA-binding transcription factor activity
HPY08_RS17910	COG3833	ABC-type maltose transport systems, permease component
HPY08_RS17915	COG1175	transmembrane transport
HPY08_RS17925	COG3842	ATPase activity
HPY08_RS17930	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
HPY08_RS17945	COG0393	Putative heavy-metal-binding
HPY08_RS17955	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
HPY08_RS17960	COG0835	chemotaxis
HPY08_RS17960	COG0784	Response regulator, receiver
HPY08_RS17965	COG1846	Transcriptional regulator
HPY08_RS17970	COG3706	GGDEF domain
HPY08_RS18005	COG0583	DNA-binding transcription factor activity
HPY08_RS18010	COG5001	Diguanylate cyclase
HPY08_RS18020	COG1741	Belongs to the pirin family
HPY08_RS18025	COG3123	guanosine phosphorylase activity
HPY08_RS18035	COG2211	Major facilitator Superfamily
HPY08_RS18045	COG1067	ATP-dependent peptidase activity
HPY08_RS18055	COG4172	Belongs to the ABC transporter superfamily
HPY08_RS18075	COG0583	DNA-binding transcription factor activity
HPY08_RS18085	COG1620	l-lactate permease
HPY08_RS18100	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
HPY08_RS18110	COG0840	transmembrane signaling receptor activity
HPY08_RS18130	COG2258	MOSC domain
HPY08_RS18135	COG0513	Belongs to the DEAD box helicase family
HPY08_RS18145	COG1132	(ABC) transporter
HPY08_RS18155	COG1902	pentaerythritol trinitrate reductase activity
HPY08_RS18165	COG1280	lysine exporter protein (LysE YggA)
HPY08_RS18170	COG2207	Transcriptional regulator
HPY08_RS18190	COG1846	Transcriptional regulator
HPY08_RS18195	COG1764	response to oxidative stress
HPY08_RS18200	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
HPY08_RS18205	COG0697	spore germination
HPY08_RS18215	COG0700	Nucleoside recognition
HPY08_RS18220	COG3366	ferrous iron transmembrane transporter activity
HPY08_RS18225	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
HPY08_RS18235	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
HPY08_RS18240	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
HPY08_RS18245	COG2259	Doxx family
HPY08_RS18270	COG0363	glucosamine-6-phosphate deaminase activity
HPY08_RS18290	COG4580	involved in the transport of maltose and maltodextrins
HPY08_RS18305	COG0840	transmembrane signaling receptor activity
HPY08_RS18320	COG0840	transmembrane signaling receptor activity
HPY08_RS18325	COG3706	GGDEF domain
HPY08_RS18335	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
HPY08_RS18340	COG1126	abc transporter atp-binding protein
HPY08_RS18350	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
HPY08_RS18355	COG4597	amino acid ABC transporter
HPY08_RS18360	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
HPY08_RS18365	COG2213	PTS system mannitol-specific
HPY08_RS18365	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
HPY08_RS18370	COG0246	Mannitol dehydrogenase
HPY08_RS18375	COG3722	fumarate hydratase activity
HPY08_RS18410	COG2910	NAD(P)H-binding
HPY08_RS18420	COG0840	transmembrane signaling receptor activity
HPY08_RS18425	COG4221	oxidoreductase activity
HPY08_RS18435	COG1901	pseudouridine methyltransferase
HPY08_RS18450	COG0531	amino acid
HPY08_RS18455	COG1982	Orn Lys Arg decarboxylase major
HPY08_RS18465	COG2197	response regulator
HPY08_RS18515	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
HPY08_RS18540	COG1262	PFAM Formylglycine-generating sulfatase enzyme
HPY08_RS18605	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
HPY08_RS18610	COG0840	transmembrane signaling receptor activity
HPY08_RS18615	COG0835	chemotaxis
HPY08_RS18620	COG0835	chemotaxis
HPY08_RS18625	COG0643	Histidine kinase
HPY08_RS18625	COG2198	Histidine kinase
HPY08_RS18645	COG0601	transmembrane transport
HPY08_RS18650	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
HPY08_RS18660	COG2194	sulfuric ester hydrolase activity
HPY08_RS18665	COG0642	Histidine kinase
HPY08_RS18670	COG0745	RESPONSE REGULATOR receiver
HPY08_RS18700	COG1444	tRNA N-acetyltransferase activity
HPY08_RS18705	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine