locus-tag	class	description
AL552_RS00070	COG1475	DNA binding
AL552_RS00075	COG1192	Involved in chromosome partitioning
AL552_RS00170	COG0776	regulation of translation
AL552_RS00205	COG2337	Toxic component of a toxin-antitoxin (TA) module
AL552_RS00265	COG1278	Cold shock
AL552_RS00370	COG0675	Transposase, IS605 OrfB family
AL552_RS00390	COG0701	Predicted permease
AL552_RS00405	COG1278	Cold shock
AL552_RS00435	COG1278	Cold shock
AL552_RS00735	COG1295	ribonuclease BN
AL552_RS00740	COG1490	D-aminoacyl-tRNA deacylase activity
AL552_RS00745	COG0456	acetyltransferase
AL552_RS00755	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
AL552_RS00760	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AL552_RS00765	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AL552_RS00770	COG3031	protein transport across the cell outer membrane
AL552_RS00780	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AL552_RS00785	COG1459	type II secretion system
AL552_RS00790	COG2165	general secretion pathway protein
AL552_RS00795	COG2165	general secretion pathway protein
AL552_RS00800	COG2165	general secretion pathway protein
AL552_RS00810	COG3156	type II secretion system protein K
AL552_RS00815	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
AL552_RS00820	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
AL552_RS00830	COG1218	3'(2'),5'-bisphosphate nucleotidase
AL552_RS00835	COG0494	nUDIX hydrolase
AL552_RS00840	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
AL552_RS00840	COG0316	Belongs to the HesB IscA family
AL552_RS00845	COG1040	competence protein
AL552_RS00850	COG0596	Alpha beta hydrolase
AL552_RS00860	COG2183	response to ionizing radiation
AL552_RS00870	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AL552_RS00890	COG2233	PERMEase
AL552_RS00895	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AL552_RS00900	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AL552_RS00905	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AL552_RS00910	COG1758	RNA polymerase activity
AL552_RS00915	COG0194	GDP metabolic process
AL552_RS00930	COG0848	biopolymer transport protein
AL552_RS00935	COG0811	peptide transport
AL552_RS00960	COG4174	ABC transporter (Permease)
AL552_RS00975	COG0444	Belongs to the ABC transporter superfamily
AL552_RS00980	COG4608	Belongs to the ABC transporter superfamily
AL552_RS01005	COG1757	Na H antiporter
AL552_RS01075	COG1561	YicC-like family, N-terminal region
AL552_RS01085	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AL552_RS01090	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AL552_RS01095	COG1560	Kdo2-lipid A biosynthetic process
AL552_RS01100	COG1309	transcriptional regulator
AL552_RS01105	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AL552_RS01120	COG2003	Belongs to the UPF0758 family
AL552_RS01155	COG0438	transferase activity, transferring glycosyl groups
AL552_RS01160	COG0463	Glycosyl transferase, family 2
AL552_RS01165	COG0859	PFAM glycosyl transferase family 9
AL552_RS01170	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AL552_RS01175	COG3642	lipopolysaccharide core region biosynthetic process
AL552_RS01185	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
AL552_RS01210	COG2895	sulfate adenylyltransferase (ATP) activity
AL552_RS01215	COG0529	Catalyzes the synthesis of activated sulfate
AL552_RS01220	COG0175	sulfate reduction
AL552_RS01225	COG0471	metal ion transport
AL552_RS01225	COG3273	potassium ion transport
AL552_RS01230	COG1519	Transferase
AL552_RS01235	COG0859	PFAM glycosyl transferase family 9
AL552_RS01245	COG1560	Kdo2-lipid A biosynthetic process
AL552_RS01255	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AL552_RS01285	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AL552_RS01290	COG1459	type II secretion system
AL552_RS01300	COG1450	Type ii and iii secretion system protein
AL552_RS01380	COG1215	transferase activity, transferring glycosyl groups
AL552_RS01385	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AL552_RS01395	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AL552_RS01450	COG0149	triose-phosphate isomerase activity
AL552_RS01480	COG1494	fructose-1,6-bisphosphatase
AL552_RS01495	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AL552_RS01500	COG1575	Belongs to the MenA family. Type 1 subfamily
AL552_RS01505	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AL552_RS01510	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
AL552_RS01520	COG1609	Transcriptional regulator
AL552_RS01525	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AL552_RS01535	COG0254	rRNA binding
AL552_RS01545	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AL552_RS01550	COG0088	Forms part of the polypeptide exit tunnel
AL552_RS01560	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AL552_RS01565	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AL552_RS01570	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AL552_RS01575	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AL552_RS01585	COG0255	Belongs to the universal ribosomal protein uL29 family
AL552_RS01590	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AL552_RS01600	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AL552_RS01605	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AL552_RS01610	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AL552_RS01615	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AL552_RS01620	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AL552_RS01635	COG1841	ribosomal large subunit assembly
AL552_RS01640	COG0200	Binds to the 23S rRNA
AL552_RS01645	COG0201	protein transport
AL552_RS01650	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AL552_RS01655	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
AL552_RS01660	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AL552_RS01670	COG0202	RNA polymerase activity
AL552_RS01675	COG0203	ribosomal protein L17
AL552_RS01685	COG0545	Peptidyl-prolyl cis-trans isomerase
AL552_RS01695	COG2153	protein acetylation
AL552_RS01700	COG0513	Belongs to the DEAD box helicase family
AL552_RS01710	COG0737	Belongs to the 5'-nucleotidase family
AL552_RS01720	COG0175	sulfate reduction
AL552_RS01725	COG2895	sulfate adenylyltransferase (ATP) activity
AL552_RS01730	COG3273	potassium ion transport
AL552_RS01730	COG0471	metal ion transport
AL552_RS01735	COG0529	Catalyzes the synthesis of activated sulfate
AL552_RS01755	COG4181	ATPase activity
AL552_RS01770	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
AL552_RS01780	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AL552_RS01785	COG0729	surface antigen
AL552_RS01790	COG2911	Protein conserved in bacteria
AL552_RS01795	COG2105	PFAM AIG2 family protein
AL552_RS01805	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AL552_RS01810	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
AL552_RS01820	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AL552_RS01825	COG0163	prenyltransferase activity
AL552_RS01830	COG4143	(ABC) transporter
AL552_RS01835	COG1178	ABC-type Fe3 transport system permease component
AL552_RS01840	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
AL552_RS01845	COG0583	DNA-binding transcription factor activity
AL552_RS01865	COG2358	TRAP transporter, solute receptor (TAXI family
AL552_RS01890	COG0142	geranyltranstransferase activity
AL552_RS01895	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AL552_RS01905	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AL552_RS01910	COG2966	Psort location CytoplasmicMembrane, score
AL552_RS01925	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AL552_RS01930	COG2967	ApaG domain
AL552_RS01935	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AL552_RS01940	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
AL552_RS01945	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AL552_RS01950	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
AL552_RS01955	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AL552_RS01975	COG0473	3-isopropylmalate dehydrogenase activity
AL552_RS01980	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AL552_RS02005	COG0583	DNA-binding transcription factor activity
AL552_RS02015	COG0028	Belongs to the TPP enzyme family
AL552_RS02035	COG0469	pyruvate kinase activity
AL552_RS02045	COG1349	DNA-binding transcription factor activity
AL552_RS02050	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AL552_RS02065	COG5002	protein histidine kinase activity
AL552_RS02075	COG2376	Dihydroxyacetone kinase
AL552_RS02080	COG1461	Dihydroxyacetone kinase
AL552_RS02095	COG3722	fumarate hydratase activity
AL552_RS02100	COG0246	Mannitol dehydrogenase
AL552_RS02105	COG2213	PTS system mannitol-specific
AL552_RS02105	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL552_RS02140	COG1464	Belongs to the NlpA lipoprotein family
AL552_RS02155	COG0358	DNA primase activity
AL552_RS02160	COG1610	YqeY-like protein
AL552_RS02165	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AL552_RS02170	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AL552_RS02175	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AL552_RS02180	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AL552_RS02185	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AL552_RS02190	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AL552_RS02195	COG1968	undecaprenyl-diphosphatase activity
AL552_RS02200	COG0617	tRNA 3'-terminal CCA addition
AL552_RS02205	COG3267	Type II secretory pathway component ExeA
AL552_RS02205	COG3409	Peptidoglycan-binding domain 1 protein
AL552_RS02215	COG0405	Gamma-glutamyltransferase
AL552_RS02220	COG4991	sh3 domain protein
AL552_RS02225	COG0306	phosphate transporter
AL552_RS02230	COG1392	Phosphate transport regulator
AL552_RS02235	COG3025	triphosphatase activity
AL552_RS02255	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
AL552_RS02255	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
AL552_RS02260	COG1538	Outer membrane efflux protein
AL552_RS02265	COG0494	nUDIX hydrolase
AL552_RS02270	COG3151	Protein conserved in bacteria
AL552_RS02280	COG3150	esterase
AL552_RS02290	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
AL552_RS02295	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AL552_RS02305	COG3105	Protein conserved in bacteria
AL552_RS02315	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AL552_RS02325	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AL552_RS02330	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AL552_RS02335	COG0723	plastoquinol--plastocyanin reductase activity
AL552_RS02340	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AL552_RS02345	COG2857	Cytochrome c1
AL552_RS02350	COG0625	glutathione transferase activity
AL552_RS02355	COG2969	positive regulation of protein catabolic process
AL552_RS02360	COG2823	Periplasmic or secreted lipoprotein
AL552_RS02365	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AL552_RS02380	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
AL552_RS02400	COG3116	cell division
AL552_RS02405	COG0768	penicillin binding
AL552_RS02410	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AL552_RS02415	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AL552_RS02420	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AL552_RS02425	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AL552_RS02430	COG0772	Belongs to the SEDS family
AL552_RS02440	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AL552_RS02445	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AL552_RS02450	COG0849	cell division
AL552_RS02455	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AL552_RS02460	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
AL552_RS02470	COG0653	protein targeting
AL552_RS02475	COG0494	nUDIX hydrolase
AL552_RS02485	COG0505	Belongs to the CarA family
AL552_RS02490	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AL552_RS02510	COG0730	response to heat
AL552_RS02525	COG0583	DNA-binding transcription factor activity
AL552_RS02530	COG2860	membrane
AL552_RS02545	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AL552_RS02555	COG0493	'glutamate synthase
AL552_RS02560	COG0069	glutamate synthase activity
AL552_RS02560	COG0070	glutamate synthase
AL552_RS02560	COG0067	glutamate synthase
AL552_RS02570	COG0067	glutamate synthase
AL552_RS02570	COG0069	glutamate synthase activity
AL552_RS02570	COG0070	glutamate synthase
AL552_RS02575	COG1242	4 iron, 4 sulfur cluster binding
AL552_RS02580	COG2203	Gaf domain
AL552_RS02580	COG5001	Diguanylate cyclase
AL552_RS02580	COG4251	negative regulation of phosphorylation
AL552_RS02580	COG3706	GGDEF domain
AL552_RS02585	COG5002	protein histidine kinase activity
AL552_RS02585	COG2198	Histidine kinase
AL552_RS02585	COG0784	Response regulator, receiver
AL552_RS02595	COG0745	RESPONSE REGULATOR receiver
AL552_RS02610	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AL552_RS02630	COG0083	homoserine kinase activity
AL552_RS02635	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
AL552_RS02645	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
AL552_RS02650	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
AL552_RS02660	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AL552_RS02675	COG1115	amino acid carrier protein
AL552_RS02680	COG3022	response to hydroperoxide
AL552_RS02685	COG0513	Belongs to the DEAD box helicase family
AL552_RS02690	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
AL552_RS02700	COG0716	FMN binding
AL552_RS02705	COG4974	Belongs to the 'phage' integrase family
AL552_RS02710	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AL552_RS02725	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AL552_RS02730	COG2204	response regulator
AL552_RS02740	COG0667	Aldo Keto reductase
AL552_RS02760	COG0494	nUDIX hydrolase
AL552_RS02770	COG0730	response to heat
AL552_RS02775	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
AL552_RS02780	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AL552_RS02790	COG1283	sodium-dependent phosphate transmembrane transporter activity
AL552_RS02795	COG0583	DNA-binding transcription factor activity
AL552_RS02800	COG0640	Transcriptional regulator
AL552_RS02805	COG0268	Binds directly to 16S ribosomal RNA
AL552_RS02810	COG0728	peptidoglycan biosynthetic process
AL552_RS02815	COG0196	riboflavin kinase activity
AL552_RS02825	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
AL552_RS02830	COG1047	Peptidyl-prolyl cis-trans
AL552_RS02835	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
AL552_RS02845	COG3279	Response regulator of the LytR AlgR family
AL552_RS02850	COG3275	phosphorelay sensor kinase activity
AL552_RS02855	COG1966	Carbon starvation protein
AL552_RS02875	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AL552_RS02880	COG1472	Belongs to the glycosyl hydrolase 3 family
AL552_RS02885	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AL552_RS02890	COG1605	Chorismate mutase
AL552_RS02890	COG0287	Prephenate dehydrogenase
AL552_RS02895	COG0739	heme binding
AL552_RS02895	COG0741	lytic transglycosylase activity
AL552_RS02895	COG1196	nuclear chromosome segregation
AL552_RS02905	COG0488	(ABC) transporter
AL552_RS02915	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
AL552_RS02920	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
AL552_RS02925	COG0077	Prephenate dehydratase
AL552_RS02925	COG1605	Chorismate mutase
AL552_RS02930	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
AL552_RS02935	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
AL552_RS02940	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AL552_RS02945	COG0564	pseudouridine synthase activity
AL552_RS02955	COG0542	response to heat
AL552_RS03015	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AL552_RS03020	COG0826	peptidase U32
AL552_RS03025	COG2974	May be involved in recombination
AL552_RS03035	COG0745	RESPONSE REGULATOR receiver
AL552_RS03040	COG5002	protein histidine kinase activity
AL552_RS03050	COG0248	Ppx GppA phosphatase
AL552_RS03055	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
AL552_RS03060	COG0573	inorganic phosphate transmembrane transporter activity
AL552_RS03065	COG0581	inorganic phosphate transmembrane transporter activity
AL552_RS03070	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AL552_RS03075	COG0704	Plays a role in the regulation of phosphate uptake
AL552_RS03085	COG3142	Participates in the control of copper homeostasis
AL552_RS03095	COG0450	alkyl hydroperoxide reductase
AL552_RS03100	COG0583	DNA-binding transcription factor activity
AL552_RS03105	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AL552_RS03115	COG0517	IMP dehydrogenase activity
AL552_RS03130	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AL552_RS03140	COG1862	Preprotein translocase
AL552_RS03145	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AL552_RS03150	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AL552_RS03155	COG0483	inositol monophosphate 1-phosphatase activity
AL552_RS03170	COG1104	cysteine desulfurase activity
AL552_RS03175	COG0822	iron-sulfur transferase activity
AL552_RS03190	COG0443	Heat shock 70 kDa protein
AL552_RS03195	COG0633	Ferredoxin
AL552_RS03200	COG2975	iron-sulfur cluster assembly
AL552_RS03210	COG0105	UTP biosynthetic process
AL552_RS03230	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
AL552_RS03235	COG0124	histidyl-tRNA synthetase
AL552_RS03240	COG2976	Protein conserved in bacteria
AL552_RS03245	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AL552_RS03250	COG1160	GTP binding
AL552_RS03270	COG0517	IMP dehydrogenase activity
AL552_RS03270	COG0516	GMP reductase activity
AL552_RS03275	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AL552_RS03275	COG0519	Catalyzes the synthesis of GMP from XMP
AL552_RS03280	COG1757	Na H antiporter
AL552_RS03290	COG1584	GPR1 FUN34 yaaH family protein
AL552_RS03295	COG1115	amino acid carrier protein
AL552_RS03315	COG2873	o-acetylhomoserine
AL552_RS03320	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AL552_RS03340	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AL552_RS03340	COG3153	acetyltransferase
AL552_RS03345	COG0583	DNA-binding transcription factor activity
AL552_RS03370	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AL552_RS03375	COG2867	negative regulation of translational initiation
AL552_RS03380	COG2914	Belongs to the UPF0125 (RnfH) family
AL552_RS03385	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AL552_RS03390	COG0497	DNA recombination
AL552_RS03400	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AL552_RS03405	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AL552_RS03410	COG1301	dicarboxylic acid transport
AL552_RS03420	COG0484	heat shock protein binding
AL552_RS03450	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
AL552_RS03465	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
AL552_RS03470	COG0047	phosphoribosylformylglycinamidine synthase activity
AL552_RS03470	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AL552_RS03485	COG1629	transport
AL552_RS03500	COG2195	Cleaves the N-terminal amino acid of tripeptides
AL552_RS03505	COG2252	PERMEase
AL552_RS03510	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
AL552_RS03515	COG1073	alpha beta
AL552_RS03525	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AL552_RS03530	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
AL552_RS03535	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AL552_RS03540	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AL552_RS03540	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AL552_RS03555	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
AL552_RS03565	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AL552_RS03570	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AL552_RS03575	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AL552_RS03580	COG0142	geranyltranstransferase activity
AL552_RS03585	COG1722	exodeoxyribonuclease VII activity
AL552_RS03590	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AL552_RS03600	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AL552_RS03600	COG0301	tRNA thio-modification
AL552_RS03605	COG0583	DNA-binding transcription factor activity
AL552_RS03615	COG2363	Small membrane protein
AL552_RS03625	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AL552_RS03630	COG1611	Belongs to the LOG family
AL552_RS03645	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AL552_RS03645	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AL552_RS03655	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
AL552_RS03660	COG1464	Belongs to the NlpA lipoprotein family
AL552_RS03665	COG2011	ABC-type metal ion transport system permease component
AL552_RS03670	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AL552_RS03675	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AL552_RS03685	COG1263	PTS System
AL552_RS03685	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AL552_RS03690	COG0366	Alpha amylase catalytic
AL552_RS03705	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AL552_RS03710	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AL552_RS03720	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AL552_RS03725	COG0321	lipoyl(octanoyl) transferase activity
AL552_RS03735	COG1686	Belongs to the peptidase S11 family
AL552_RS03740	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AL552_RS03745	COG0772	Belongs to the SEDS family
AL552_RS03750	COG0768	penicillin binding
AL552_RS03755	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AL552_RS03760	COG0799	negative regulation of ribosome biogenesis
AL552_RS03770	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
AL552_RS03775	COG0495	leucyl-tRNA aminoacylation
AL552_RS03780	COG2888	peptidyl-tyrosine sulfation
AL552_RS03785	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AL552_RS03790	COG4535	Mg2 and Co2 transporter CorC
AL552_RS03795	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AL552_RS03800	COG1702	phosphate starvation-inducible protein PhoH
AL552_RS03805	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AL552_RS03815	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AL552_RS03925	COG0012	GTP binding
AL552_RS03930	COG0193	aminoacyl-tRNA hydrolase activity
AL552_RS03935	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AL552_RS03940	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
AL552_RS03945	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
AL552_RS03950	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
AL552_RS03955	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AL552_RS03960	COG2890	protein-(glutamine-N5) methyltransferase activity
AL552_RS03965	COG3094	Invasion gene expression up-regulator, SirB
AL552_RS03970	COG2912	Transglutaminase-like superfamily
AL552_RS03975	COG2877	3-deoxy-8-phosphooctulonate synthase activity
AL552_RS03980	COG0737	Belongs to the 5'-nucleotidase family
AL552_RS03990	COG1187	pseudouridine synthase activity
AL552_RS03995	COG2840	Smr protein MutS2
AL552_RS04035	COG2217	Heavy metal translocating P-type atpase
AL552_RS04035	COG2608	mercury ion transmembrane transporter activity
AL552_RS04055	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
AL552_RS04110	COG0784	Response regulator, receiver
AL552_RS04110	COG0835	chemotaxis
AL552_RS04115	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AL552_RS04120	COG1815	bacterial-type flagellum-dependent cell motility
AL552_RS04125	COG1558	bacterial-type flagellum-dependent cell motility
AL552_RS04135	COG1749	Flagellar hook protein flgE
AL552_RS04140	COG4787	bacterial-type flagellum-dependent cell motility
AL552_RS04150	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AL552_RS04155	COG1706	bacterial-type flagellum-dependent cell motility
AL552_RS04160	COG3951	Flagellar rod assembly protein muramidase FlgJ
AL552_RS04160	COG1705	Flagellar rod assembly protein muramidase FlgJ
AL552_RS04170	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL552_RS04175	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL552_RS04190	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL552_RS04195	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL552_RS04200	COG2190	(PTS) system
AL552_RS04205	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AL552_RS04210	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL552_RS04220	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AL552_RS04225	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
AL552_RS04230	COG3115	cell septum assembly
AL552_RS04260	COG0330	HflC and HflK could
AL552_RS04265	COG3118	belongs to the thioredoxin family
AL552_RS04275	COG0300	oxidoreductase activity
AL552_RS04280	COG1090	epimerase
AL552_RS04310	COG0622	Phosphoesterase
AL552_RS04330	COG3710	Transcriptional regulator
AL552_RS04335	COG0326	Molecular chaperone. Has ATPase activity
AL552_RS04345	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AL552_RS04350	COG3104	oligopeptide transport
AL552_RS04355	COG0250	Participates in transcription elongation, termination and antitermination
AL552_RS04360	COG0367	asparagine synthase
AL552_RS04365	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AL552_RS04365	COG4651	solute:proton antiporter activity
AL552_RS04370	COG1940	carbohydrate kinase activity
AL552_RS04370	COG1846	Transcriptional regulator
AL552_RS04375	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AL552_RS04390	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AL552_RS04395	COG0735	belongs to the Fur family
AL552_RS04405	COG0716	FMN binding
AL552_RS04415	COG0596	Alpha beta hydrolase
AL552_RS04420	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
AL552_RS04425	COG0033	Phosphoglucomutase
AL552_RS04435	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AL552_RS04450	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AL552_RS04455	COG1053	succinate dehydrogenase
AL552_RS04460	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AL552_RS04465	COG0567	Dehydrogenase, E1 component
AL552_RS04470	COG0508	dehydrogenase complex catalyzes the overall conversion of
AL552_RS04485	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AL552_RS04495	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
AL552_RS04500	COG4977	sequence-specific DNA binding
AL552_RS04510	COG1918	ferrous iron import across plasma membrane
AL552_RS04530	COG0018	arginyl-trna synthetase
AL552_RS04540	COG3102	Protein conserved in bacteria
AL552_RS04545	COG0788	formyltetrahydrofolate deformylase activity
AL552_RS04555	COG1214	PFAM Peptidase M22, glycoprotease
AL552_RS04570	COG2267	carboxylic ester hydrolase activity
AL552_RS04580	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
AL552_RS04585	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
AL552_RS04590	COG2894	cell division
AL552_RS04595	COG0850	regulation of cytokinetic process
AL552_RS04600	COG3100	YcgL domain-containing protein
AL552_RS04605	COG2951	lytic endotransglycosylase activity
AL552_RS04615	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AL552_RS04620	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AL552_RS04630	COG2226	methyltransferase
AL552_RS04640	COG1028	Short-chain dehydrogenase reductase Sdr
AL552_RS04650	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AL552_RS04675	COG2986	histidine ammonia-lyase
AL552_RS04680	COG1216	Glycosyl transferase, family 2
AL552_RS04685	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AL552_RS04700	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AL552_RS04705	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AL552_RS04740	COG1253	flavin adenine dinucleotide binding
AL552_RS04745	COG0513	Belongs to the DEAD box helicase family
AL552_RS04750	COG0569	domain protein
AL552_RS04755	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AL552_RS04770	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AL552_RS04775	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AL552_RS04780	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AL552_RS04785	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AL552_RS04810	COG0544	peptidyl-prolyl cis-trans isomerase activity
AL552_RS04820	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AL552_RS04825	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AL552_RS04830	COG0776	regulation of translation
AL552_RS04835	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AL552_RS04840	COG1555	photosystem II stabilization
AL552_RS04855	COG0232	Belongs to the dGTPase family. Type 2 subfamily
AL552_RS04860	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
AL552_RS04865	COG0436	Aminotransferase
AL552_RS04870	COG1169	isochorismate synthase
AL552_RS04875	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
AL552_RS04880	COG0596	Alpha beta hydrolase
AL552_RS04885	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
AL552_RS04905	COG2855	membrane
AL552_RS04910	COG0477	Major facilitator Superfamily
AL552_RS04960	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL552_RS04965	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AL552_RS04990	COG1522	sequence-specific DNA binding
AL552_RS05000	COG1946	Acyl-CoA thioesterase
AL552_RS05005	COG3126	Type III secretion system lipoprotein chaperone (YscW)
AL552_RS05030	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AL552_RS05035	COG0517	IMP dehydrogenase activity
AL552_RS05035	COG0516	GMP reductase activity
AL552_RS05065	COG0537	adenosine 5'-monophosphoramidase activity
AL552_RS05090	COG3150	esterase
AL552_RS05095	COG1252	NADH dehydrogenase
AL552_RS05110	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AL552_RS05120	COG4591	ABC-type transport system involved in lipoprotein release permease component
AL552_RS05125	COG1136	(ABC) transporter
AL552_RS05130	COG4591	ABC-type transport system involved in lipoprotein release permease component
AL552_RS05140	COG2333	competence protein COMEC
AL552_RS05140	COG0658	competence protein
AL552_RS05145	COG1132	(ABC) transporter
AL552_RS05165	COG2719	SpoVR family
AL552_RS05170	COG2718	Belongs to the UPF0229 family
AL552_RS05175	COG2766	serine protein kinase
AL552_RS05185	COG3013	Belongs to the UPF0304 family
AL552_RS05195	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
AL552_RS05205	COG1882	Formate acetyltransferase
AL552_RS05250	COG0708	Exodeoxyribonuclease III
AL552_RS05260	COG3923	Primosomal replication protein n
AL552_RS05265	COG0730	response to heat
AL552_RS05280	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
AL552_RS05285	COG1187	pseudouridine synthase activity
AL552_RS05295	COG1278	Cold shock
AL552_RS05300	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AL552_RS05305	COG0542	response to heat
AL552_RS05310	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AL552_RS05315	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
AL552_RS05340	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AL552_RS05345	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
AL552_RS05350	COG0297	glycogen (starch) synthase activity
AL552_RS05370	COG3070	regulator of competence-specific genes
AL552_RS05375	COG1609	Transcriptional regulator
AL552_RS05380	COG3381	protein complex oligomerization
AL552_RS05385	COG0745	RESPONSE REGULATOR receiver
AL552_RS05390	COG1434	Gram-negative-bacterium-type cell wall biogenesis
AL552_RS05395	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AL552_RS05400	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
AL552_RS05405	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
AL552_RS05410	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
AL552_RS05430	COG0189	ligase activity
AL552_RS05430	COG4067	protein conserved in archaea
AL552_RS05440	COG0500	methyltransferase
AL552_RS05450	COG1801	Protein of unknown function DUF72
AL552_RS05460	COG0217	transcriptional regulatory protein
AL552_RS05465	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
AL552_RS05470	COG0632	four-way junction helicase activity
AL552_RS05475	COG2255	four-way junction helicase activity
AL552_RS05480	COG1271	oxidase subunit
AL552_RS05485	COG1294	oxidase, subunit
AL552_RS05490	COG4890	Cyd operon protein YbgT
AL552_RS05500	COG0824	Thioesterase
AL552_RS05505	COG0811	peptide transport
AL552_RS05520	COG0823	Involved in the tonB-independent uptake of proteins
AL552_RS05525	COG2885	chlorophyll binding
AL552_RS05530	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
AL552_RS05535	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AL552_RS05545	COG3766	membrane
AL552_RS05565	COG5002	protein histidine kinase activity
AL552_RS05565	COG0784	Response regulator, receiver
AL552_RS05580	COG0840	transmembrane signaling receptor activity
AL552_RS05585	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL552_RS05590	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AL552_RS05615	COG3568	Endonuclease Exonuclease Phosphatase
AL552_RS05625	COG0840	transmembrane signaling receptor activity
AL552_RS05640	COG0583	DNA-binding transcription factor activity
AL552_RS05650	COG0686	Belongs to the AlaDH PNT family
AL552_RS05660	COG1674	ftsk spoiiie
AL552_RS05665	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AL552_RS05670	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AL552_RS05675	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AL552_RS05705	COG1073	alpha beta
AL552_RS05705	COG2226	methyltransferase
AL552_RS05710	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
AL552_RS05730	COG0300	oxidoreductase activity
AL552_RS05745	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AL552_RS05755	COG2268	Band 7 protein
AL552_RS05765	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AL552_RS05770	COG2915	High frequency lysogenization protein hflD homolog
AL552_RS05775	COG0482	sulfurtransferase activity
AL552_RS05785	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AL552_RS05795	COG1757	Na H antiporter
AL552_RS05805	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AL552_RS05810	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AL552_RS05815	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AL552_RS05820	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AL552_RS05820	COG0131	Imidazoleglycerol-phosphate dehydratase
AL552_RS05825	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AL552_RS05830	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
AL552_RS05840	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AL552_RS05840	COG0140	phosphoribosyl-ATP diphosphatase activity
AL552_RS05845	COG3012	SEC-C Motif Domain Protein
AL552_RS05850	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AL552_RS05855	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AL552_RS05860	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AL552_RS05865	COG0215	cysteine-tRNA ligase activity
AL552_RS05870	COG1435	thymidine kinase activity
AL552_RS05875	COG1434	Gram-negative-bacterium-type cell wall biogenesis
AL552_RS05900	COG2116	formate transmembrane transporter activity
AL552_RS05910	COG0390	transport system, permease component
AL552_RS05915	COG4459	periplasmic nitrate reductase
AL552_RS05920	COG3005	denitrification pathway
AL552_RS05925	COG0243	molybdopterin cofactor binding
AL552_RS05940	COG1227	inorganic diphosphatase activity
AL552_RS05950	COG4172	Belongs to the ABC transporter superfamily
AL552_RS05960	COG4171	peptide transport system, permease
AL552_RS05975	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
AL552_RS05980	COG1842	Phage shock protein A
AL552_RS05990	COG1983	PspC domain protein
AL552_RS06010	COG2818	Glycosylase
AL552_RS06015	COG5380	lipid catabolic process
AL552_RS06020	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
AL552_RS06025	COG0626	cystathionine gamma-synthase activity
AL552_RS06035	COG0733	neurotransmitter:sodium symporter activity
AL552_RS06040	COG0564	pseudouridine synthase activity
AL552_RS06050	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AL552_RS06055	COG1151	hydroxylamine reductase activity
AL552_RS06060	COG3604	Transcriptional regulator
AL552_RS06075	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AL552_RS06080	COG4136	ATPase activity
AL552_RS06085	COG4135	transport system, permease component
AL552_RS06090	COG4134	Bacterial extracellular solute-binding protein
AL552_RS06100	COG3313	Fe-S protein
AL552_RS06120	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AL552_RS06145	COG1061	Type III restriction enzyme res subunit
AL552_RS06150	COG1187	pseudouridine synthase activity
AL552_RS06160	COG2814	Major facilitator Superfamily
AL552_RS06190	COG3005	denitrification pathway
AL552_RS06195	COG0702	epimerase
AL552_RS06200	COG0534	Mate efflux family protein
AL552_RS06220	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AL552_RS06230	COG1960	acyl-CoA dehydrogenase activity
AL552_RS06235	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AL552_RS06240	COG2985	domain, Protein
AL552_RS06240	COG3273	potassium ion transport
AL552_RS06245	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AL552_RS06265	COG1737	Transcriptional regulator
AL552_RS06270	COG0076	glutamate decarboxylase activity
AL552_RS06280	COG2431	L-lysine efflux transmembrane transporter activity
AL552_RS06295	COG3070	regulator of competence-specific genes
AL552_RS06310	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL552_RS06310	COG4191	Histidine kinase
AL552_RS06320	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AL552_RS06330	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AL552_RS06335	COG4988	ABC transporter
AL552_RS06340	COG0492	ferredoxin-NADP+ reductase activity
AL552_RS06365	COG0471	metal ion transport
AL552_RS06370	COG2949	membrane
AL552_RS06375	COG0281	malic enzyme
AL552_RS06395	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AL552_RS06430	COG0277	FAD linked oxidase domain protein
AL552_RS06430	COG0247	lactate metabolic process
AL552_RS06445	COG2986	histidine ammonia-lyase
AL552_RS06450	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
AL552_RS06455	COG0010	Belongs to the arginase family
AL552_RS06460	COG1228	amidohydrolase
AL552_RS06465	COG2188	Transcriptional regulator
AL552_RS06480	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AL552_RS06490	COG0291	Belongs to the bacterial ribosomal protein bL35 family
AL552_RS06500	COG0393	Putative heavy-metal-binding
AL552_RS06530	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AL552_RS06535	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AL552_RS06535	COG0072	phenylalanine-tRNA ligase activity
AL552_RS06545	COG0776	regulation of translation
AL552_RS06555	COG0500	methyltransferase
AL552_RS06560	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
AL552_RS06565	COG0295	cytidine deaminase activity
AL552_RS06570	COG1346	cytolysis
AL552_RS06575	COG1380	Effector of murein hydrolase LrgA
AL552_RS06580	COG2925	Exonuclease
AL552_RS06585	COG1823	symporter activity
AL552_RS06590	COG0702	epimerase
AL552_RS06595	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
AL552_RS06600	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
AL552_RS06620	COG2988	succinylglutamate desuccinylase activity
AL552_RS06625	COG4139	cobalamin transport
AL552_RS06630	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
AL552_RS06650	COG0583	DNA-binding transcription factor activity
AL552_RS06660	COG1451	nucleotide metabolic process
AL552_RS06665	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
AL552_RS06695	COG3938	Belongs to the proline racemase family
AL552_RS06710	COG2423	ornithine cyclodeaminase activity
AL552_RS06715	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AL552_RS06720	COG3842	ATPase activity
AL552_RS06730	COG1177	transmembrane transport
AL552_RS06740	COG3291	Pkd domain containing protein
AL552_RS06760	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AL552_RS06765	COG0601	transmembrane transport
AL552_RS06775	COG2195	Cleaves the N-terminal amino acid of tripeptides
AL552_RS06785	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
AL552_RS06795	COG0625	glutathione transferase activity
AL552_RS06830	COG2200	EAL domain
AL552_RS06840	COG1846	Transcriptional regulator
AL552_RS06845	COG2315	Protein conserved in bacteria
AL552_RS06860	COG0110	maltose O-acetyltransferase activity
AL552_RS06890	COG3063	Type IV pilus biogenesis stability protein PilW
AL552_RS06895	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
AL552_RS06910	COG0531	amino acid
AL552_RS06915	COG1560	Kdo2-lipid A biosynthetic process
AL552_RS06920	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
AL552_RS06925	COG1280	lysine exporter protein (LysE YggA)
AL552_RS06935	COG1115	amino acid carrier protein
AL552_RS06965	COG1368	sulfuric ester hydrolase activity
AL552_RS06970	COG0642	Histidine kinase
AL552_RS06975	COG0745	RESPONSE REGULATOR receiver
AL552_RS06985	COG1028	Short-chain dehydrogenase reductase Sdr
AL552_RS06995	COG1022	Amp-dependent synthetase and ligase
AL552_RS07005	COG2113	Glycine betaine
AL552_RS07010	COG4176	ABC-type proline glycine betaine transport system permease component
AL552_RS07030	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AL552_RS07035	COG0456	acetyltransferase
AL552_RS07040	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AL552_RS07045	COG0662	Cupin 2, conserved barrel domain protein
AL552_RS07050	COG0527	aspartate kinase activity
AL552_RS07070	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL552_RS07085	COG3290	protein histidine kinase activity
AL552_RS07090	COG4565	transcriptional regulatory protein
AL552_RS07105	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AL552_RS07110	COG0363	glucosamine-6-phosphate deaminase activity
AL552_RS07115	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
AL552_RS07140	COG3284	Transcriptional regulator
AL552_RS07145	COG1012	belongs to the aldehyde dehydrogenase family
AL552_RS07215	COG4669	(LipO)protein
AL552_RS07235	COG3177	Filamentation induced by cAMP protein fic
AL552_RS07265	COG1028	Short-chain dehydrogenase reductase Sdr
AL552_RS07290	COG4792	protein secretion
AL552_RS07295	COG4791	protein targeting
AL552_RS07300	COG4794	Type iii secretion
AL552_RS07305	COG4790	Type iii secretion
AL552_RS07375	COG0457	Tetratricopeptide repeat
AL552_RS07395	COG2358	TRAP transporter, solute receptor (TAXI family
AL552_RS07400	COG0730	response to heat
AL552_RS07435	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
AL552_RS07440	COG0372	Belongs to the citrate synthase family
AL552_RS07450	COG2828	Protein conserved in bacteria
AL552_RS07475	COG0561	phosphatase activity
AL552_RS07480	COG0602	queuosine metabolic process
AL552_RS07485	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AL552_RS07490	COG3706	GGDEF domain
AL552_RS07550	COG1254	Belongs to the acylphosphatase family
AL552_RS07555	COG2920	part of a sulfur-relay system
AL552_RS07570	COG0670	Belongs to the BI1 family
AL552_RS07575	COG1126	abc transporter atp-binding protein
AL552_RS07580	COG0765	amino acid transport
AL552_RS07585	COG4597	amino acid ABC transporter
AL552_RS07590	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL552_RS07605	COG1666	GTP binding
AL552_RS07610	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AL552_RS07635	COG3008	intermembrane lipid transfer
AL552_RS07640	COG2995	paraquat-inducible protein a
AL552_RS07645	COG1132	(ABC) transporter
AL552_RS07650	COG1956	GAF domain-containing protein
AL552_RS07655	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
AL552_RS07670	COG0308	aminopeptidase N
AL552_RS07685	COG0167	dihydroorotate dehydrogenase activity
AL552_RS07695	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AL552_RS07695	COG0116	Belongs to the methyltransferase superfamily
AL552_RS07705	COG0488	(ABC) transporter
AL552_RS07720	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AL552_RS07725	COG1067	ATP-dependent peptidase activity
AL552_RS07730	COG3120	sequence-specific DNA binding
AL552_RS07750	COG2205	protein histidine kinase activity
AL552_RS07750	COG0784	Response regulator, receiver
AL552_RS07765	COG3278	Belongs to the heme-copper respiratory oxidase family
AL552_RS07780	COG2010	Cytochrome c
AL552_RS07790	COG2217	Heavy metal translocating P-type atpase
AL552_RS07805	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AL552_RS07810	COG0589	response to stress
AL552_RS07835	COG3842	ATPase activity
AL552_RS07845	COG1177	transmembrane transport
AL552_RS07855	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AL552_RS07860	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AL552_RS07865	COG0004	ammonium transporteR
AL552_RS07885	COG4282	regulation of fungal-type cell wall biogenesis
AL552_RS08025	COG0437	4 iron, 4 sulfur cluster binding
AL552_RS08030	COG3383	formate dehydrogenase (NAD+) activity
AL552_RS08030	COG0243	molybdopterin cofactor binding
AL552_RS08040	COG3381	protein complex oligomerization
AL552_RS08060	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AL552_RS08065	COG0488	(ABC) transporter
AL552_RS08075	COG4191	Histidine kinase
AL552_RS08080	COG2204	response regulator
AL552_RS08095	COG3842	ATPase activity
AL552_RS08100	COG0746	molybdenum cofactor guanylyltransferase activity
AL552_RS08115	COG1940	carbohydrate kinase activity
AL552_RS08120	COG3148	PFAM DTW domain containing protein
AL552_RS08155	COG0791	NLP P60 protein
AL552_RS08165	COG3706	GGDEF domain
AL552_RS08175	COG3001	Fructosamine kinase
AL552_RS08185	COG0307	riboflavin synthase, alpha
AL552_RS08190	COG0534	Mate efflux family protein
AL552_RS08200	COG1793	dna ligase
AL552_RS08240	COG0438	transferase activity, transferring glycosyl groups
AL552_RS08270	COG0438	transferase activity, transferring glycosyl groups
AL552_RS08275	COG1215	transferase activity, transferring glycosyl groups
AL552_RS08280	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AL552_RS08290	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AL552_RS08305	COG1643	Atp-dependent helicase
AL552_RS08310	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AL552_RS08355	COG0443	Heat shock 70 kDa protein
AL552_RS08360	COG0443	Heat shock 70 kDa protein
AL552_RS08380	COG2165	general secretion pathway protein
AL552_RS08385	COG1132	(ABC) transporter
AL552_RS08390	COG1132	(ABC) transporter
AL552_RS08400	COG4774	siderophore transport
AL552_RS08410	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AL552_RS08415	COG1120	ATPase activity
AL552_RS08430	COG0814	amino acid
AL552_RS08440	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
AL552_RS08450	COG0861	Integral membrane protein TerC family
AL552_RS08460	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
AL552_RS08465	COG1328	CTP reductase activity
AL552_RS08490	COG4191	Histidine kinase
AL552_RS08520	COG4702	Belongs to the UPF0303 family
AL552_RS08525	COG0673	inositol 2-dehydrogenase activity
AL552_RS08530	COG1349	DNA-binding transcription factor activity
AL552_RS08545	COG0641	radical SAM
AL552_RS08560	COG3119	arylsulfatase activity
AL552_RS08565	COG1566	PFAM secretion protein HlyD family protein
AL552_RS08575	COG0583	DNA-binding transcription factor activity
AL552_RS08600	COG1280	lysine exporter protein (LysE YggA)
AL552_RS08610	COG5507	3-demethylubiquinone-9 3-methyltransferase
AL552_RS08655	COG2801	Transposase and inactivated derivatives
AL552_RS09040	COG1051	belongs to the nudix hydrolase family
AL552_RS09155	COG2026	Addiction module toxin, RelE StbE family
AL552_RS09330	COG1051	belongs to the nudix hydrolase family
AL552_RS09410	COG1683	Conserved Protein
AL552_RS09420	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AL552_RS09890	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AL552_RS09900	COG3768	UPF0283 membrane protein
AL552_RS09905	COG3106	COG3106 Predicted ATPase
AL552_RS09925	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AL552_RS09930	COG2205	protein histidine kinase activity
AL552_RS09930	COG0784	Response regulator, receiver
AL552_RS09940	COG0494	nUDIX hydrolase
AL552_RS09945	COG0814	amino acid
AL552_RS09950	COG1760	l-serine dehydratase
AL552_RS09955	COG2200	EAL domain
AL552_RS09965	COG0720	synthase
AL552_RS09970	COG0840	transmembrane signaling receptor activity
AL552_RS09975	COG0017	Asparaginyl-tRNA synthetase
AL552_RS09985	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL552_RS10000	COG1448	Aminotransferase
AL552_RS10020	COG0840	transmembrane signaling receptor activity
AL552_RS10025	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AL552_RS10055	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AL552_RS10070	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AL552_RS10075	COG3108	Peptidase M15
AL552_RS10080	COG2989	Protein conserved in bacteria
AL552_RS10105	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AL552_RS10115	COG4235	cytochrome complex assembly
AL552_RS10115	COG3088	subunit of a heme lyase
AL552_RS10125	COG1138	Cytochrome C-type biogenesis protein
AL552_RS10130	COG3301	Polysulphide reductase, NrfD
AL552_RS10135	COG0437	4 iron, 4 sulfur cluster binding
AL552_RS10145	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
AL552_RS10165	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AL552_RS10170	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AL552_RS10200	COG0019	diaminopimelate decarboxylase activity
AL552_RS10240	COG0322	excinuclease ABC activity
AL552_RS10245	COG2197	response regulator
AL552_RS10250	COG0417	DNA replication proofreading
AL552_RS10270	COG1187	pseudouridine synthase activity
AL552_RS10280	COG0009	L-threonylcarbamoyladenylate synthase
AL552_RS10285	COG0613	PHP domain protein
AL552_RS10295	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AL552_RS10300	COG0512	Glutamine amidotransferase of anthranilate synthase
AL552_RS10310	COG0135	phosphoribosylanthranilate isomerase activity
AL552_RS10310	COG0134	indole-3-glycerol-phosphate synthase activity
AL552_RS10320	COG0159	tryptophan synthase activity
AL552_RS10325	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AL552_RS10330	COG0318	PFAM AMP-dependent synthetase and ligase
AL552_RS10340	COG1301	dicarboxylic acid transport
AL552_RS10360	COG2917	probably involved in intracellular septation
AL552_RS10370	COG2350	Protein conserved in bacteria
AL552_RS10380	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
AL552_RS10400	COG5001	Diguanylate cyclase
AL552_RS10405	COG1032	radical SAM domain protein
AL552_RS10410	COG0840	transmembrane signaling receptor activity
AL552_RS10420	COG0745	RESPONSE REGULATOR receiver
AL552_RS10425	COG3850	Histidine kinase
AL552_RS10425	COG5002	protein histidine kinase activity
AL552_RS10475	COG0577	efflux transmembrane transporter activity
AL552_RS10475	COG1136	(ABC) transporter
AL552_RS10480	COG1136	(ABC) transporter
AL552_RS10480	COG0577	efflux transmembrane transporter activity
AL552_RS10485	COG1136	(ABC) transporter
AL552_RS10485	COG0577	efflux transmembrane transporter activity
AL552_RS10495	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL552_RS10525	COG3118	belongs to the thioredoxin family
AL552_RS10530	COG4232	protein-disulfide reductase activity
AL552_RS10565	COG2863	cytochrome
AL552_RS10570	COG3258	Cytochrome c
AL552_RS10575	COG2995	paraquat-inducible protein a
AL552_RS10580	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AL552_RS10580	COG3008	intermembrane lipid transfer
AL552_RS10595	COG4166	transmembrane transport
AL552_RS10605	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
AL552_RS10610	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
AL552_RS10620	COG0539	negative regulation of cytoplasmic translation
AL552_RS10625	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AL552_RS10630	COG0616	signal peptide processing
AL552_RS10635	COG1028	Short-chain dehydrogenase reductase Sdr
AL552_RS10650	COG0587	DNA-directed DNA polymerase activity
AL552_RS10655	COG0784	Response regulator, receiver
AL552_RS10655	COG0835	chemotaxis
AL552_RS10660	COG1940	carbohydrate kinase activity
AL552_RS10665	COG0469	pyruvate kinase activity
AL552_RS10670	COG4667	esterase of the alpha-beta hydrolase superfamily
AL552_RS10685	COG0733	neurotransmitter:sodium symporter activity
AL552_RS10700	COG1263	PTS System
AL552_RS10700	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AL552_RS10705	COG0084	hydrolase, TatD family'
AL552_RS10710	COG0470	DNA polymerase III
AL552_RS10715	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AL552_RS10720	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AL552_RS10750	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AL552_RS10755	COG0416	fatty acid biosynthetic process
AL552_RS10765	COG1399	metal-binding, possibly nucleic acid-binding protein
AL552_RS10770	COG0424	maF-like protein
AL552_RS10775	COG0564	pseudouridine synthase activity
AL552_RS10780	COG1530	ribonuclease E activity
AL552_RS10790	COG0659	secondary active sulfate transmembrane transporter activity
AL552_RS10795	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AL552_RS10800	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
AL552_RS10810	COG0572	uridine kinase
AL552_RS10820	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AL552_RS10820	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AL552_RS10845	COG2186	Transcriptional regulator
AL552_RS10850	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AL552_RS10855	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AL552_RS10860	COG0653	protein targeting
AL552_RS10865	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AL552_RS10870	COG3706	GGDEF domain
AL552_RS10875	COG0366	Alpha amylase catalytic
AL552_RS10880	COG1122	ATPase activity
AL552_RS10885	COG4120	Belongs to the binding-protein-dependent transport system permease family
AL552_RS10895	COG3092	negative regulation of chromosome organization
AL552_RS10900	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AL552_RS10910	COG3174	membrane
AL552_RS10920	COG0435	Glutathione S-transferase
AL552_RS10930	COG0444	Belongs to the ABC transporter superfamily
AL552_RS10935	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AL552_RS10940	COG0601	transmembrane transport
AL552_RS10950	COG0314	molybdopterin synthase activity
AL552_RS10955	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AL552_RS10960	COG0315	cyclic pyranopterin monophosphate synthase activity
AL552_RS10965	COG0521	Mo-molybdopterin cofactor biosynthetic process
AL552_RS10970	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AL552_RS10975	COG0391	Required for morphogenesis under gluconeogenic growth conditions
AL552_RS10980	COG2198	Histidine kinase
AL552_RS10985	COG2204	response regulator
AL552_RS10990	COG0556	nucleotide-excision repair
AL552_RS11000	COG4657	Part of a membrane complex involved in electron transport
AL552_RS11005	COG2878	Part of a membrane complex involved in electron transport
AL552_RS11010	COG4656	Part of a membrane complex involved in electron transport
AL552_RS11015	COG4658	electron transport chain
AL552_RS11020	COG4659	FMN binding
AL552_RS11025	COG4660	Part of a membrane complex involved in electron transport
AL552_RS11030	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AL552_RS11035	COG0346	lactoylglutathione lyase activity
AL552_RS11045	COG2885	chlorophyll binding
AL552_RS11055	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AL552_RS11060	COG2056	Na+-H+ antiporter family
AL552_RS11070	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AL552_RS11090	COG1012	belongs to the aldehyde dehydrogenase family
AL552_RS11090	COG1454	alcohol dehydrogenase
AL552_RS11095	COG2095	MarC family integral membrane protein
AL552_RS11100	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AL552_RS11105	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AL552_RS11110	COG1757	Na H antiporter
AL552_RS11125	COG3081	Nucleoid-associated protein
AL552_RS11130	COG3082	Protein of unknown function (DUF1414)
AL552_RS11145	COG0123	including yeast histone deacetylase and acetoin utilization protein
AL552_RS11160	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AL552_RS11165	COG0778	Nitroreductase
AL552_RS11175	COG0446	pyridine nucleotide-disulphide oxidoreductase
AL552_RS11175	COG1902	pentaerythritol trinitrate reductase activity
AL552_RS11180	COG0616	signal peptide processing
AL552_RS11185	COG0252	asparaginase activity
AL552_RS11190	COG3139	Protein of unknown function (DUF1315)
AL552_RS11200	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AL552_RS11205	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AL552_RS11220	COG2226	methyltransferase
AL552_RS11240	COG1785	Belongs to the alkaline phosphatase family
AL552_RS11250	COG0346	lactoylglutathione lyase activity
AL552_RS11255	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AL552_RS11260	COG0668	transmembrane transport
AL552_RS11265	COG2983	Belongs to the UPF0260 family
AL552_RS11270	COG2261	transglycosylase associated protein
AL552_RS11285	COG3681	Belongs to the UPF0597 family
AL552_RS11290	COG0251	oxidation-reduction process
AL552_RS11295	COG0814	amino acid
AL552_RS11300	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AL552_RS11305	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AL552_RS11320	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AL552_RS11335	COG0745	RESPONSE REGULATOR receiver
AL552_RS11340	COG0583	DNA-binding transcription factor activity
AL552_RS11345	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
AL552_RS11350	COG1286	toxin biosynthetic process
AL552_RS11355	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
AL552_RS11360	COG0285	dihydrofolate synthase activity
AL552_RS11365	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
AL552_RS11375	COG0101	tRNA pseudouridine synthase activity
AL552_RS11385	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AL552_RS11390	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AL552_RS11395	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AL552_RS11400	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
AL552_RS11400	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AL552_RS11405	COG0431	NADPH-dependent FMN reductase
AL552_RS11420	COG3101	peptidyl-lysine hydroxylation
AL552_RS11430	COG2860	membrane
AL552_RS11435	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AL552_RS11440	COG2890	protein-(glutamine-N5) methyltransferase activity
AL552_RS11445	COG2840	Smr protein MutS2
AL552_RS11450	COG2062	phosphohistidine phosphatase, SixA
AL552_RS11465	COG1250	3-hydroxyacyl-CoA dehydrogenase
AL552_RS11465	COG1024	Enoyl-CoA hydratase
AL552_RS11470	COG0183	Belongs to the thiolase family
AL552_RS11485	COG2067	long-chain fatty acid transport protein
AL552_RS11490	COG2067	long-chain fatty acid transport protein
AL552_RS11500	COG4235	cytochrome complex assembly
AL552_RS11500	COG3088	subunit of a heme lyase
AL552_RS11510	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AL552_RS11515	COG1138	Cytochrome C-type biogenesis protein
AL552_RS11520	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AL552_RS11525	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AL552_RS11530	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AL552_RS11535	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AL552_RS11540	COG4133	protoheme IX ABC transporter activity
AL552_RS11550	COG0835	chemotaxis
AL552_RS11560	COG1192	Involved in chromosome partitioning
AL552_RS11565	COG2201	protein-glutamate methylesterase activity
AL552_RS11570	COG0784	Response regulator, receiver
AL552_RS11570	COG0643	Histidine kinase
AL552_RS11570	COG2198	Histidine kinase
AL552_RS11575	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
AL552_RS11615	COG1987	bacterial-type flagellum assembly
AL552_RS11665	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AL552_RS11675	COG1677	Flagellar hook-basal body complex protein FliE
AL552_RS11695	COG1516	flagellar protein fliS
AL552_RS11705	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
AL552_RS11710	COG1334	flagellar protein FlaG
AL552_RS11715	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL552_RS11720	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL552_RS11730	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL552_RS11735	COG2837	iron assimilation
AL552_RS11760	COG1393	Belongs to the ArsC family
AL552_RS11765	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AL552_RS11780	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
AL552_RS11785	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AL552_RS11795	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AL552_RS11810	COG4783	chaperone-mediated protein folding
AL552_RS11815	COG1393	Belongs to the ArsC family
AL552_RS11835	COG2233	PERMEase
AL552_RS11840	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AL552_RS11845	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AL552_RS11850	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AL552_RS11855	COG0121	glutamine amidotransferase
AL552_RS11860	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AL552_RS11865	COG1960	acyl-CoA dehydrogenase activity
AL552_RS11900	COG0328	RNA-DNA hybrid ribonuclease activity
AL552_RS11905	COG2226	methyltransferase
AL552_RS11910	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AL552_RS11915	COG1388	LysM domain
AL552_RS11915	COG0741	lytic transglycosylase activity
AL552_RS11925	COG3021	interspecies interaction between organisms
AL552_RS11930	COG0347	Belongs to the P(II) protein family
AL552_RS11945	COG0825	malonyl-CoA metabolic process
AL552_RS11950	COG0587	DNA-directed DNA polymerase activity
AL552_RS11960	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AL552_RS11965	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AL552_RS11975	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AL552_RS11980	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
AL552_RS11990	COG0750	zinc metalloprotease
AL552_RS11995	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
AL552_RS12000	COG0575	Belongs to the CDS family
AL552_RS12005	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AL552_RS12010	COG0233	cytoplasmic translational termination
AL552_RS12015	COG0528	UMP kinase activity
AL552_RS12020	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AL552_RS12025	COG0052	Belongs to the universal ribosomal protein uS2 family
AL552_RS12030	COG0024	Methionine aminopeptidase
AL552_RS12045	COG0564	pseudouridine synthase activity
AL552_RS12080	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AL552_RS12085	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AL552_RS12110	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
AL552_RS12120	COG0254	rRNA binding
AL552_RS12125	COG1720	tRNA m6t6A37 methyltransferase activity
AL552_RS12130	COG0442	prolyl-tRNA aminoacylation
AL552_RS12150	COG0733	neurotransmitter:sodium symporter activity
AL552_RS12165	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AL552_RS12170	COG0514	ATP-dependent DNA helicase (RecQ)
AL552_RS12190	COG1477	protein flavinylation
AL552_RS12195	COG2871	sodium ion transport
AL552_RS12200	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AL552_RS12205	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AL552_RS12210	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AL552_RS12215	COG1805	sodium ion transport
AL552_RS12220	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AL552_RS12230	COG0271	Belongs to the BolA IbaG family
AL552_RS12235	COG2813	Specifically methylates the guanine in position
AL552_RS12240	COG3056	Lipoprotein
AL552_RS12260	COG1595	DNA-templated transcription, initiation
AL552_RS12285	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AL552_RS12290	COG0693	protein deglycase activity
AL552_RS12295	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AL552_RS12300	COG3706	GGDEF domain
AL552_RS12305	COG2166	iron-sulfur cluster assembly
AL552_RS12310	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AL552_RS12315	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
AL552_RS12330	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AL552_RS12330	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AL552_RS12350	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AL552_RS12355	COG1074	ATP-dependent DNA helicase activity
AL552_RS12365	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AL552_RS12385	COG3141	response to X-ray
AL552_RS12390	COG2171	N-acyltransferase activity
AL552_RS12395	COG0584	glycerophosphoryl diester phosphodiesterase
AL552_RS12400	COG2271	Major facilitator Superfamily
AL552_RS12410	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AL552_RS12415	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
AL552_RS12420	COG1349	DNA-binding transcription factor activity
AL552_RS12425	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
AL552_RS12445	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AL552_RS12450	COG1609	Transcriptional regulator
AL552_RS12455	COG2176	DNA-directed DNA polymerase activity
AL552_RS12470	COG2017	converts alpha-aldose to the beta-anomer
AL552_RS12475	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
AL552_RS12480	COG1085	galactose-1-phosphate uridylyltransferase
AL552_RS12485	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AL552_RS12495	COG1609	Transcriptional regulator
AL552_RS12500	COG3250	beta-galactosidase activity
AL552_RS12505	COG2731	YhcH YjgK YiaL family protein
AL552_RS12510	COG0531	amino acid
AL552_RS12515	COG0583	DNA-binding transcription factor activity
AL552_RS12575	COG4964	Belongs to the GSP D family
AL552_RS12600	COG2169	Transcriptional regulator
AL552_RS12605	COG1022	Amp-dependent synthetase and ligase
AL552_RS12620	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AL552_RS12625	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
AL552_RS12635	COG0560	Phosphoserine phosphatase
AL552_RS12645	COG0813	purine-nucleoside phosphorylase activity
AL552_RS12650	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
AL552_RS12655	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
AL552_RS12670	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AL552_RS12675	COG0084	hydrolase, TatD family'
AL552_RS12685	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AL552_RS12705	COG3153	acetyltransferase
AL552_RS12710	COG3154	lipid carrier protein
AL552_RS12725	COG0826	peptidase U32
AL552_RS12730	COG0826	peptidase U32
AL552_RS12750	COG1185	polyribonucleotide nucleotidyltransferase activity
AL552_RS12755	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AL552_RS12760	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AL552_RS12765	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AL552_RS12770	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AL552_RS12775	COG0195	Participates in both transcription termination and antitermination
AL552_RS12780	COG0779	Required for maturation of 30S ribosomal subunits
AL552_RS12795	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AL552_RS12805	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AL552_RS12810	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AL552_RS12815	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AL552_RS12820	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AL552_RS12825	COG1534	Rna-binding protein
AL552_RS12830	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AL552_RS12835	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AL552_RS12840	COG2027	D-alanyl-D-alanine carboxypeptidase
AL552_RS12850	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AL552_RS12875	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
AL552_RS12880	COG0628	permease
AL552_RS12885	COG2813	Specifically methylates the guanine in position
AL552_RS12890	COG0784	Response regulator, receiver
AL552_RS12890	COG2205	protein histidine kinase activity
AL552_RS12895	COG0747	negative chemotaxis
AL552_RS12905	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AL552_RS12910	COG0444	Belongs to the ABC transporter superfamily
AL552_RS12915	COG4608	Belongs to the ABC transporter superfamily
AL552_RS12925	COG2971	BadF BadG BcrA BcrD
AL552_RS12940	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AL552_RS12945	COG3842	ATPase activity
AL552_RS12955	COG1840	ABC-type Fe3 transport system, periplasmic component
AL552_RS12960	COG0004	ammonium transporteR
AL552_RS12965	COG0347	Belongs to the P(II) protein family
AL552_RS12970	COG3112	Uncharacterised protein family (UPF0231)
AL552_RS12975	COG1049	propionate catabolic process, 2-methylcitrate cycle
AL552_RS12980	COG1752	Esterase of the alpha-beta hydrolase superfamily
AL552_RS12985	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AL552_RS12990	COG1643	Atp-dependent helicase
AL552_RS12995	COG1489	DNA binding
AL552_RS13005	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AL552_RS13015	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AL552_RS13020	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
AL552_RS13025	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
AL552_RS13030	COG1560	Kdo2-lipid A biosynthetic process
AL552_RS13040	COG0842	Transport permease protein
AL552_RS13045	COG1131	(ABC) transporter
AL552_RS13050	COG0659	secondary active sulfate transmembrane transporter activity
AL552_RS13055	COG0288	reversible hydration of carbon dioxide
AL552_RS13070	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AL552_RS13075	COG0508	dehydrogenase complex catalyzes the overall conversion of
AL552_RS13080	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
AL552_RS13085	COG2186	Transcriptional regulator
AL552_RS13105	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AL552_RS13110	COG1459	type II secretion system
AL552_RS13120	COG0237	dephospho-CoA kinase activity
AL552_RS13125	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
AL552_RS13130	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AL552_RS13145	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AL552_RS13150	COG0228	four-way junction DNA binding
AL552_RS13155	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AL552_RS13160	COG4137	Cytochrome C assembly protein
AL552_RS13165	COG4536	flavin adenine dinucleotide binding
AL552_RS13170	COG1854	S-ribosylhomocysteine lyase activity
AL552_RS13185	COG0612	Peptidase, M16
AL552_RS13190	COG1238	metal cluster binding
AL552_RS13200	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
AL552_RS13205	COG5016	pyruvate
AL552_RS13205	COG0511	ligase activity, forming carbon-carbon bonds
AL552_RS13210	COG3630	sodium ion export across plasma membrane
AL552_RS13275	COG0527	aspartate kinase activity
AL552_RS13280	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AL552_RS13285	COG2137	regulation of response to DNA damage stimulus
AL552_RS13290	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AL552_RS13300	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AL552_RS13305	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AL552_RS13315	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AL552_RS13320	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AL552_RS13330	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
AL552_RS13335	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
AL552_RS13340	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AL552_RS13345	COG0148	phosphopyruvate hydratase activity
AL552_RS13350	COG0504	CTP synthase activity
AL552_RS13355	COG3956	TIGRFAM MazG family protein
AL552_RS13360	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AL552_RS13370	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AL552_RS13385	COG0736	holo-[acyl-carrier-protein] synthase activity
AL552_RS13390	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AL552_RS13395	COG1381	Involved in DNA repair and RecF pathway recombination
AL552_RS13400	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AL552_RS13410	COG0681	Belongs to the peptidase S26 family
AL552_RS13415	COG0481	GTPase activity
AL552_RS13420	COG3086	response to oxidative stress
AL552_RS13435	COG1595	DNA-templated transcription, initiation
AL552_RS13445	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
AL552_RS13455	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
AL552_RS13460	COG0354	folic acid binding
AL552_RS13475	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AL552_RS13480	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AL552_RS13485	COG3079	Belongs to the UPF0149 family
AL552_RS13495	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
AL552_RS13505	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AL552_RS13510	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AL552_RS13515	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AL552_RS13525	COG0583	DNA-binding transcription factor activity
AL552_RS13540	COG0668	transmembrane transport
AL552_RS13545	COG0191	fructose-bisphosphate aldolase activity
AL552_RS13550	COG0126	phosphoglycerate kinase activity
AL552_RS13555	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AL552_RS13560	COG4771	TonB-dependent receptor
AL552_RS13565	COG0583	DNA-binding transcription factor activity
AL552_RS13570	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AL552_RS13580	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AL552_RS13595	COG2356	endonuclease I
AL552_RS13600	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AL552_RS13605	COG0189	ligase activity
AL552_RS13610	COG1678	Uncharacterized ACR, COG1678
AL552_RS13615	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AL552_RS13630	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
AL552_RS13635	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AL552_RS13640	COG0762	integral membrane protein
AL552_RS13645	COG1872	DUF167
AL552_RS13655	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AL552_RS13660	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AL552_RS13665	COG2066	Belongs to the glutaminase family
AL552_RS13675	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AL552_RS13685	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
AL552_RS13760	COG1012	belongs to the aldehyde dehydrogenase family
AL552_RS13800	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
AL552_RS13810	COG3394	polysaccharide catabolic process
AL552_RS13815	COG1486	melibiose metabolic process
AL552_RS13820	COG1447	Phosphotransferase system cellobiose-specific component IIA
AL552_RS13825	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AL552_RS13830	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AL552_RS13835	COG0726	polysaccharide deacetylase
AL552_RS13845	COG1028	Short-chain dehydrogenase reductase Sdr
AL552_RS13860	COG0795	lipopolysaccharide-transporting ATPase activity
AL552_RS13865	COG0795	lipopolysaccharide-transporting ATPase activity
AL552_RS13875	COG2927	DNA polymerase III (CHI subunit)
AL552_RS13880	COG0525	valine-tRNA ligase activity
AL552_RS13890	COG0456	acetyltransferase
AL552_RS13920	COG0540	Belongs to the ATCase OTCase family
AL552_RS13925	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
AL552_RS13930	COG0251	oxidation-reduction process
AL552_RS13935	COG0204	Acyl-transferase
AL552_RS13940	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AL552_RS13945	COG5007	Belongs to the BolA IbaG family
AL552_RS13955	COG2854	intermembrane phospholipid transfer
AL552_RS13960	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AL552_RS13965	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AL552_RS13970	COG1127	ABC transporter
AL552_RS13980	COG0517	IMP dehydrogenase activity
AL552_RS13980	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AL552_RS13990	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AL552_RS13995	COG1137	ATPase activity
AL552_RS14005	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
AL552_RS14010	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL552_RS14015	COG1660	Displays ATPase and GTPase activities
AL552_RS14020	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL552_RS14025	COG2239	Acts as a magnesium transporter
AL552_RS14030	COG0312	modulator of DNA gyrase
AL552_RS14035	COG3028	Belongs to the UPF0307 family
AL552_RS14040	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AL552_RS14045	COG0564	pseudouridine synthase activity
AL552_RS14055	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AL552_RS14060	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AL552_RS14065	COG0312	modulator of DNA gyrase
AL552_RS14070	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AL552_RS14075	COG3164	Protein of unknown function
AL552_RS14085	COG0424	maF-like protein
AL552_RS14090	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
AL552_RS14095	COG1792	Involved in formation and maintenance of cell shape
AL552_RS14100	COG1077	Cell shape determining protein MreB Mrl
AL552_RS14135	COG2165	general secretion pathway protein
AL552_RS14145	COG1459	type II secretion system
AL552_RS14150	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AL552_RS14160	COG3267	Type II secretory pathway component ExeA
AL552_RS14160	COG3409	Peptidoglycan-binding domain 1 protein
AL552_RS14165	COG1450	Type ii and iii secretion system protein
AL552_RS14185	COG2199	diguanylate cyclase activity
AL552_RS14185	COG2200	EAL domain
AL552_RS14190	COG0629	single-stranded DNA binding
AL552_RS14205	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AL552_RS14215	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AL552_RS14230	COG0527	aspartate kinase activity
AL552_RS14305	COG0175	sulfate reduction
AL552_RS14310	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AL552_RS14315	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AL552_RS14335	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AL552_RS14340	COG0735	belongs to the Fur family
AL552_RS14350	COG0166	Belongs to the GPI family
AL552_RS14355	COG0432	Pfam Uncharacterised protein family UPF0047
AL552_RS14385	COG2965	DNA replication, synthesis of RNA primer
AL552_RS14390	COG0360	Binds together with S18 to 16S ribosomal RNA
AL552_RS14395	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AL552_RS14400	COG0338	D12 class N6 adenine-specific DNA methyltransferase
AL552_RS14410	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AL552_RS14415	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AL552_RS14445	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
AL552_RS14455	COG0678	peroxiredoxin activity
AL552_RS14455	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AL552_RS14475	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AL552_RS14475	COG0165	Argininosuccinate lyase
AL552_RS14480	COG0137	argininosuccinate synthase activity
AL552_RS14490	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AL552_RS14500	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
AL552_RS14510	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AL552_RS14515	COG0460	homoserine dehydrogenase
AL552_RS14515	COG0527	aspartate kinase activity
AL552_RS14520	COG0626	cystathionine gamma-synthase activity
AL552_RS14530	COG0281	malic enzyme
AL552_RS14540	COG2906	2 iron, 2 sulfur cluster binding
AL552_RS14545	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AL552_RS14550	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AL552_RS14565	COG2168	tRNA wobble position uridine thiolation
AL552_RS14570	COG2923	Belongs to the DsrF TusC family
AL552_RS14575	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AL552_RS14580	COG2964	Protein conserved in bacteria
AL552_RS14585	COG0545	Peptidyl-prolyl cis-trans isomerase
AL552_RS14600	COG1446	asparaginase
AL552_RS14605	COG1047	Peptidyl-prolyl cis-trans
AL552_RS14620	COG2249	NAD(P)H dehydrogenase (quinone) activity
AL552_RS14630	COG0488	(ABC) transporter
AL552_RS14640	COG0429	hydrolase of the alpha beta-hydrolase fold
AL552_RS14645	COG3089	Belongs to the UPF0270 family
AL552_RS14650	COG3954	Phosphoribulokinase
AL552_RS14655	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AL552_RS14675	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AL552_RS14680	COG0512	Glutamine amidotransferase of anthranilate synthase
AL552_RS14695	COG0180	Tryptophanyl-tRNA synthetase
AL552_RS14700	COG0546	phosphoglycolate phosphatase activity
AL552_RS14705	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AL552_RS14710	COG0557	exoribonuclease II activity
AL552_RS14715	COG1959	2 iron, 2 sulfur cluster binding
AL552_RS14720	COG1017	nitric oxide dioxygenase activity
AL552_RS14720	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AL552_RS14725	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
AL552_RS14735	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AL552_RS14740	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
AL552_RS14745	COG0330	HflC and HflK could
AL552_RS14750	COG0330	HflC and HflK could
AL552_RS14755	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AL552_RS14765	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AL552_RS14770	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AL552_RS14780	COG0802	atpase or kinase
AL552_RS14790	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AL552_RS14855	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AL552_RS14860	COG1162	GTPase activity
AL552_RS14865	COG0688	phosphatidylethanolamine metabolic process
AL552_RS14870	COG0471	metal ion transport
AL552_RS14880	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AL552_RS14885	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AL552_RS14890	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AL552_RS14895	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AL552_RS14900	COG1045	serine acetyltransferase
AL552_RS14905	COG4942	peptidase
AL552_RS14925	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
AL552_RS14930	COG1053	succinate dehydrogenase
AL552_RS14935	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AL552_RS14940	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
AL552_RS14960	COG1509	lysine 2,3-aminomutase activity
AL552_RS14965	COG1285	pathogenesis
AL552_RS14975	COG0459	protein refolding
AL552_RS14985	COG0534	Mate efflux family protein
AL552_RS14990	COG0205	6-phosphofructokinase activity
AL552_RS14995	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AL552_RS15000	COG3678	ATP-independent chaperone mediated protein folding
AL552_RS15005	COG0745	RESPONSE REGULATOR receiver
AL552_RS15010	COG2205	protein histidine kinase activity
AL552_RS15020	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AL552_RS15025	COG3030	protein affecting phage T7 exclusion by the F plasmid
AL552_RS15030	COG1027	Aspartate ammonia-lyase
AL552_RS15035	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
AL552_RS15040	COG4232	protein-disulfide reductase activity
AL552_RS15050	COG3263	regulation of cellular component size
AL552_RS15060	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AL552_RS15085	COG2814	Major facilitator Superfamily
AL552_RS15100	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AL552_RS15105	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AL552_RS15110	COG0511	ligase activity, forming carbon-carbon bonds
AL552_RS15115	COG0439	Biotin carboxylase
AL552_RS15125	COG2264	protein methyltransferase activity
AL552_RS15130	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AL552_RS15135	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
AL552_RS15145	COG0488	(ABC) transporter
AL552_RS15205	COG1982	Orn Lys Arg decarboxylase major
AL552_RS15210	COG0531	amino acid
AL552_RS15220	COG3710	Transcriptional regulator
AL552_RS15225	COG0789	Transcriptional regulator
AL552_RS15235	COG0138	bifunctional purine biosynthesis protein purh
AL552_RS15245	COG0151	Belongs to the GarS family
AL552_RS15260	COG1253	flavin adenine dinucleotide binding
AL552_RS15265	COG3068	Protein conserved in bacteria
AL552_RS15275	COG1573	uracil-dna glycosylase
AL552_RS15280	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AL552_RS15285	COG2816	NAD+ diphosphatase activity
AL552_RS15290	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
AL552_RS15295	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AL552_RS15300	COG0085	RNA polymerase activity
AL552_RS15305	COG0222	ribosome binding
AL552_RS15310	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
AL552_RS15325	COG0250	Participates in transcription elongation, termination and antitermination
AL552_RS15330	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AL552_RS15340	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AL552_RS15370	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
AL552_RS15370	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
AL552_RS15375	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AL552_RS15385	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AL552_RS15460	COG4206	TonB-dependent receptor
AL552_RS15505	COG2003	Belongs to the UPF0758 family
AL552_RS15510	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AL552_RS15520	COG0732	type I restriction modification DNA specificity domain
AL552_RS15525	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
AL552_RS15550	COG3302	dmso reductase anchor subunit
AL552_RS15555	COG0437	4 iron, 4 sulfur cluster binding
AL552_RS15560	COG0243	molybdopterin cofactor binding
AL552_RS15570	COG2221	Nitrite and sulphite reductase 4Fe-4S
AL552_RS15570	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AL552_RS15575	COG5001	Diguanylate cyclase
AL552_RS15595	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AL552_RS15600	COG0534	Mate efflux family protein
AL552_RS15605	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
AL552_RS15615	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AL552_RS15625	COG2937	Belongs to the GPAT DAPAT family
AL552_RS15630	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AL552_RS15635	COG3161	chorismate lyase activity
AL552_RS15640	COG1580	Controls the rotational direction of flagella during chemotaxis
AL552_RS15645	COG0705	Rhomboid family
AL552_RS15650	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AL552_RS15660	COG2177	Part of the ABC transporter FtsEX involved in
AL552_RS15665	COG2884	Cell division ATP-binding protein ftsE
AL552_RS15670	COG0552	protein localization to endoplasmic reticulum
AL552_RS15675	COG0742	ribosomal rna small subunit methyltransferase
AL552_RS15685	COG2095	MarC family integral membrane protein
AL552_RS15735	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AL552_RS15740	COG0640	Transcriptional regulator
AL552_RS15745	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AL552_RS15750	COG1280	lysine exporter protein (LysE YggA)
AL552_RS15755	COG2267	carboxylic ester hydrolase activity
AL552_RS15760	COG0561	phosphatase activity
AL552_RS15775	COG3148	PFAM DTW domain containing protein
AL552_RS15780	COG3287	FIST C domain
AL552_RS15780	COG2200	EAL domain
AL552_RS15780	COG2199	diguanylate cyclase activity
AL552_RS15785	COG1011	Hydrolase
AL552_RS15790	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
AL552_RS15800	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AL552_RS15805	COG0019	diaminopimelate decarboxylase activity
AL552_RS15815	COG1965	Belongs to the frataxin family
AL552_RS15820	COG3072	Adenylate cyclase
AL552_RS15825	COG0181	hydroxymethylbilane synthase activity
AL552_RS15830	COG1587	Uroporphyrinogen-III synthase
AL552_RS15835	COG2959	enzyme of heme biosynthesis
AL552_RS15840	COG3071	HemY protein
AL552_RS15885	COG0633	Ferredoxin
AL552_RS15890	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
AL552_RS15910	COG3118	belongs to the thioredoxin family
AL552_RS15915	COG0513	Belongs to the DEAD box helicase family
AL552_RS15920	COG0248	Ppx GppA phosphatase
AL552_RS15925	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
AL552_RS15935	COG0514	ATP-dependent DNA helicase (RecQ)
AL552_RS15940	COG2962	Rard protein
AL552_RS15965	COG0210	DNA helicase
AL552_RS15975	COG3220	belongs to the UPF0276 family
AL552_RS16005	COG0006	proline dipeptidase activity
AL552_RS16005	COG0006	proline dipeptidase activity
AL552_RS16020	COG2104	thiamine diphosphate biosynthetic process
AL552_RS16025	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AL552_RS16040	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AL552_RS16045	COG2132	Multicopper oxidase
AL552_RS16100	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AL552_RS16105	COG1739	Uncharacterized protein family UPF0029
AL552_RS16115	COG0183	Belongs to the thiolase family
AL552_RS16120	COG0604	alcohol dehydrogenase
AL552_RS16135	COG0425	Belongs to the sulfur carrier protein TusA family
AL552_RS16145	COG2119	membrane
AL552_RS16160	COG0366	Alpha amylase catalytic
AL552_RS16165	COG3977	Valine--pyruvate aminotransferase
AL552_RS16170	COG0071	Belongs to the small heat shock protein (HSP20) family
AL552_RS16185	COG0187	DNA topoisomerase II activity
AL552_RS16195	COG0592	DNA-directed DNA polymerase activity
AL552_RS16200	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AL552_RS16220	COG1126	abc transporter atp-binding protein
AL552_RS16230	COG0594	ribonuclease P activity
AL552_RS16240	COG0706	membrane insertase activity
AL552_RS16250	COG4974	Belongs to the 'phage' integrase family
AL552_RS16355	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AL552_RS16360	COG0445	tRNA wobble uridine modification
AL552_RS16365	COG0357	Ribosomal RNA small subunit methyltransferase G
AL552_RS16370	COG1192	Involved in chromosome partitioning
AL552_RS16375	COG1475	DNA binding
AL552_RS16380	COG3312	ion transport
AL552_RS16385	COG0356	it plays a direct role in the translocation of protons across the membrane
AL552_RS16395	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AL552_RS16405	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AL552_RS16410	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AL552_RS16415	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AL552_RS16420	COG0355	proton-transporting ATP synthase activity, rotational mechanism
AL552_RS16430	COG0765	amino acid transport
AL552_RS16440	COG2814	Major facilitator Superfamily
AL552_RS16445	COG0583	DNA-binding transcription factor activity
AL552_RS16455	COG0129	dihydroxy-acid dehydratase activity
AL552_RS16460	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AL552_RS16465	COG3978	acetolactate synthase activity
AL552_RS16475	COG0606	chelatase, subunit chli
AL552_RS16485	COG0204	Acyl-transferase
AL552_RS16490	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AL552_RS16495	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AL552_RS16505	COG3084	Protein conserved in bacteria
AL552_RS16515	COG4326	sporulation control protein
AL552_RS16520	COG1272	protein, Hemolysin III
AL552_RS16530	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AL552_RS16535	COG0569	domain protein
AL552_RS16540	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AL552_RS16540	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AL552_RS16545	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
AL552_RS16550	COG0242	peptide deformylase activity
AL552_RS16560	COG0758	DNA mediated transformation
AL552_RS16565	COG2922	Belongs to the Smg family
AL552_RS16570	COG0551	DNA topoisomerase type I activity
AL552_RS16575	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AL552_RS16580	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AL552_RS16585	COG0009	L-threonylcarbamoyladenylate synthase
AL552_RS16590	COG0408	coproporphyrinogen oxidase activity
AL552_RS16595	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AL552_RS16605	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AL552_RS16645	COG0583	DNA-binding transcription factor activity
AL552_RS16650	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AL552_RS16655	COG2960	long-chain fatty acid transporting porin activity
AL552_RS16660	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AL552_RS16665	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL552_RS16725	COG4166	transmembrane transport
AL552_RS16730	COG0601	transmembrane transport
AL552_RS16735	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AL552_RS16780	COG1609	Transcriptional regulator
AL552_RS16785	COG0583	DNA-binding transcription factor activity
AL552_RS16800	COG0129	dihydroxy-acid dehydratase activity
AL552_RS16805	COG3265	gluconokinase activity
AL552_RS16810	COG2610	gluconate transmembrane transporter activity
AL552_RS16815	COG0800	Aldolase
AL552_RS16820	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
AL552_RS16825	COG0583	DNA-binding transcription factor activity
AL552_RS16830	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AL552_RS16835	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AL552_RS16845	COG1522	sequence-specific DNA binding
AL552_RS16850	COG5001	Diguanylate cyclase
AL552_RS16850	COG5002	protein histidine kinase activity
AL552_RS16855	COG0742	ribosomal rna small subunit methyltransferase
AL552_RS16870	COG0589	response to stress
AL552_RS16875	COG1528	Iron-storage protein
AL552_RS16885	COG2081	HI0933 family
AL552_RS16915	COG1597	lipid kinase activity
AL552_RS16945	COG0628	permease
AL552_RS16960	COG1322	Protein conserved in bacteria
AL552_RS16965	COG2226	methyltransferase
AL552_RS16970	COG3165	ubiquinone biosynthetic process from chorismate
AL552_RS16975	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AL552_RS16985	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AL552_RS16990	COG0805	protein transport
AL552_RS17000	COG0084	hydrolase, TatD family'
AL552_RS17015	COG0456	acetyltransferase
AL552_RS17025	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AL552_RS17025	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AL552_RS17035	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AL552_RS17070	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AL552_RS17080	COG2204	response regulator
AL552_RS17085	COG3852	Histidine kinase
AL552_RS17095	COG0174	glutamine synthetase
AL552_RS17100	COG1217	gtp-binding protein TYPA
AL552_RS17120	COG1012	belongs to the aldehyde dehydrogenase family
AL552_RS17135	COG0446	pyridine nucleotide-disulphide oxidoreductase
AL552_RS17135	COG1902	pentaerythritol trinitrate reductase activity
AL552_RS17145	COG0109	protoheme IX farnesyltransferase activity
AL552_RS17150	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AL552_RS17155	COG1845	cytochrome c oxidase, subunit III
AL552_RS17160	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AL552_RS17165	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AL552_RS17170	COG1028	Short-chain dehydrogenase reductase Sdr
AL552_RS17180	COG1024	Enoyl-CoA hydratase
AL552_RS17185	COG1024	Enoyl-CoA hydratase
AL552_RS17200	COG0183	Belongs to the thiolase family
AL552_RS17210	COG1960	acyl-CoA dehydrogenase activity
AL552_RS17215	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AL552_RS17220	COG1024	Enoyl-CoA hydratase
AL552_RS17230	COG5413	integral membrane protein
AL552_RS17240	COG0277	FAD linked oxidase domain protein
AL552_RS17240	COG0247	lactate metabolic process
AL552_RS17295	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AL552_RS17310	COG0513	Belongs to the DEAD box helicase family
AL552_RS17315	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
AL552_RS17355	COG0582	viral genome integration into host DNA
AL552_RS17395	COG0840	transmembrane signaling receptor activity
AL552_RS17400	COG1119	ATPase activity
AL552_RS17405	COG2200	EAL domain
AL552_RS17425	COG0513	Belongs to the DEAD box helicase family
AL552_RS17430	COG0523	cobalamin synthesis protein
AL552_RS17440	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
AL552_RS17450	COG1278	Cold shock
AL552_RS17455	COG0557	exoribonuclease II activity
AL552_RS17460	COG0133	tryptophan synthase activity
AL552_RS17470	COG4628	conserved protein (DUF2132)
AL552_RS17475	COG0513	Belongs to the DEAD box helicase family
AL552_RS17485	COG0730	response to heat
AL552_RS17555	COG2207	Transcriptional regulator
AL552_RS17560	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
AL552_RS17570	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
AL552_RS17575	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AL552_RS17625	COG1404	Belongs to the peptidase S8 family
AL552_RS17645	COG3530	Putative quorum-sensing-regulated virulence factor
AL552_RS17670	COG3186	Phenylalanine-4-hydroxylase
AL552_RS17675	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AL552_RS17680	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AL552_RS17700	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
AL552_RS17705	COG1454	alcohol dehydrogenase
AL552_RS17710	COG2133	pyrroloquinoline quinone binding
AL552_RS17720	COG0783	Belongs to the Dps family
AL552_RS17725	COG0840	transmembrane signaling receptor activity
AL552_RS17735	COG1136	(ABC) transporter
AL552_RS17735	COG0577	efflux transmembrane transporter activity
AL552_RS17755	COG2199	diguanylate cyclase activity
AL552_RS17760	COG3036	rescue of stalled ribosome
AL552_RS17765	COG1278	Cold shock
AL552_RS17785	COG2885	chlorophyll binding
AL552_RS17795	COG0545	Peptidyl-prolyl cis-trans isomerase
AL552_RS17800	COG0109	protoheme IX farnesyltransferase activity
AL552_RS17805	COG1612	heme a metabolic process
AL552_RS17830	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
AL552_RS17835	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AL552_RS17840	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AL552_RS17845	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AL552_RS17855	COG1280	lysine exporter protein (LysE YggA)
AL552_RS17860	COG2207	Transcriptional regulator
AL552_RS17875	COG0179	Fumarylacetoacetate (FAA) hydrolase
AL552_RS17890	COG0697	spore germination
AL552_RS17910	COG2814	Major facilitator Superfamily
AL552_RS17915	COG0583	DNA-binding transcription factor activity
AL552_RS17920	COG5001	Diguanylate cyclase
AL552_RS17925	COG0739	heme binding
AL552_RS17955	COG3314	Sporulation integral membrane protein YlbJ
AL552_RS17960	COG0840	transmembrane signaling receptor activity
AL552_RS17970	COG0814	amino acid
AL552_RS17990	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
AL552_RS17995	COG1072	(Pantothenic acid kinase))
AL552_RS18005	COG1063	alcohol dehydrogenase
AL552_RS18010	COG2213	PTS system mannitol-specific
AL552_RS18015	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL552_RS18035	COG0798	PFAM Bile acid sodium symporter
AL552_RS18045	COG1881	PFAM PEBP family protein
AL552_RS18055	COG2706	6-phosphogluconolactonase activity
AL552_RS18075	COG1131	(ABC) transporter
AL552_RS18080	COG0842	Transport permease protein
AL552_RS18095	COG3383	formate dehydrogenase (NAD+) activity
AL552_RS18120	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AL552_RS18150	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AL552_RS18160	COG2067	long-chain fatty acid transport protein
AL552_RS18170	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL552_RS18180	COG1505	serine-type exopeptidase activity
AL552_RS18185	COG0488	(ABC) transporter
AL552_RS18190	COG0589	response to stress
AL552_RS18195	COG2249	NAD(P)H dehydrogenase (quinone) activity
AL552_RS18215	COG0366	Alpha amylase catalytic
AL552_RS18220	COG0789	Transcriptional regulator
AL552_RS18235	COG4934	collagen metabolic process
AL552_RS18250	COG0583	DNA-binding transcription factor activity
AL552_RS18285	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AL552_RS18290	COG0784	Response regulator, receiver
AL552_RS18290	COG0835	chemotaxis
AL552_RS18300	COG0748	coenzyme F420 binding
AL552_RS18305	COG3721	Heme iron utilization protein
AL552_RS18315	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
AL552_RS18320	COG0811	peptide transport
AL552_RS18325	COG0848	biopolymer transport protein
AL552_RS18335	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AL552_RS18340	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
AL552_RS18385	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AL552_RS18390	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AL552_RS18400	COG0401	homolog of Blt101
AL552_RS18410	COG0418	dihydroorotase activity
AL552_RS18415	COG2354	Protein conserved in bacteria
AL552_RS18445	COG3833	ABC-type maltose transport systems, permease component
AL552_RS18450	COG1175	transmembrane transport
AL552_RS18460	COG3842	ATPase activity
AL552_RS18480	COG3206	protein involved in exopolysaccharide biosynthesis
AL552_RS18480	COG0489	protein tyrosine kinase activity
AL552_RS18520	COG3097	Belongs to the UPF0267 family
AL552_RS18525	COG1309	transcriptional regulator
AL552_RS18530	COG2130	NADP-dependent
AL552_RS18540	COG0753	catalase activity
AL552_RS18545	COG2084	Dehydrogenase
AL552_RS18550	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AL552_RS18555	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AL552_RS18565	COG2207	Transcriptional regulator
AL552_RS18570	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL552_RS18570	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AL552_RS18570	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AL552_RS18600	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AL552_RS18605	COG3241	Transfers electrons from cytochrome c551 to cytochrome oxidase
AL552_RS18610	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AL552_RS18620	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AL552_RS18625	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AL552_RS18630	COG1012	belongs to the aldehyde dehydrogenase family
AL552_RS18645	COG0583	DNA-binding transcription factor activity
AL552_RS18655	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AL552_RS18685	COG3842	ATPase activity
AL552_RS18720	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AL552_RS18760	COG0583	DNA-binding transcription factor activity
AL552_RS18770	COG4948	Mandelate Racemase Muconate Lactonizing
AL552_RS18780	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AL552_RS18805	COG1342	Belongs to the UPF0251 family
AL552_RS18815	COG4176	ABC-type proline glycine betaine transport system permease component
AL552_RS18820	COG3448	diguanylate cyclase activity
AL552_RS18820	COG4175	Glycine betaine
AL552_RS18825	COG3015	lipoprotein NlpE involved in copper resistance
AL552_RS18830	COG3713	MltA-interacting MipA family protein
AL552_RS18845	COG0583	DNA-binding transcription factor activity
AL552_RS18870	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AL552_RS18880	COG1335	isochorismatase
AL552_RS18890	COG1349	DNA-binding transcription factor activity
AL552_RS18895	COG0346	lactoylglutathione lyase activity
AL552_RS18910	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AL552_RS18915	COG2070	2-Nitropropane dioxygenase
AL552_RS18920	COG0531	amino acid
AL552_RS18930	COG4303	Ethanolamine ammonia lyase large subunit
AL552_RS18935	COG2207	Transcriptional regulator
AL552_RS18940	COG1309	transcriptional regulator
AL552_RS18960	COG1280	lysine exporter protein (LysE YggA)
AL552_RS18975	COG0459	protein refolding
AL552_RS18980	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AL552_RS18985	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AL552_RS19000	COG1304	FMN binding
AL552_RS19020	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL552_RS19035	COG1706	bacterial-type flagellum-dependent cell motility
AL552_RS19040	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AL552_RS19045	COG4786	Flagellar basal body rod
AL552_RS19050	COG4787	bacterial-type flagellum-dependent cell motility
AL552_RS19055	COG1749	Flagellar hook protein flgE
AL552_RS19060	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AL552_RS19065	COG1558	bacterial-type flagellum-dependent cell motility
AL552_RS19070	COG1815	bacterial-type flagellum-dependent cell motility
AL552_RS19090	COG0741	lytic transglycosylase activity
AL552_RS19095	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AL552_RS19115	COG1760	l-serine dehydratase
AL552_RS19120	COG3104	oligopeptide transport
AL552_RS19140	COG0583	DNA-binding transcription factor activity
AL552_RS19150	COG2866	Carboxypeptidase
AL552_RS19155	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AL552_RS19165	COG2990	Protein conserved in bacteria
AL552_RS19190	COG3842	ATPase activity
AL552_RS19195	COG1840	ABC-type Fe3 transport system, periplasmic component
AL552_RS19205	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AL552_RS19210	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AL552_RS19215	COG1609	Transcriptional regulator
AL552_RS19245	COG3240	lipase activity
AL552_RS19250	COG2067	long-chain fatty acid transport protein
AL552_RS19255	COG3338	carbonate dehydratase activity
AL552_RS19260	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
AL552_RS19275	COG1011	Hydrolase
AL552_RS19315	COG0110	maltose O-acetyltransferase activity
AL552_RS19320	COG1765	OsmC-like protein
AL552_RS19325	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AL552_RS19325	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AL552_RS19340	COG3046	protein related to deoxyribodipyrimidine photolyase
AL552_RS19345	COG0415	Belongs to the DNA photolyase family
AL552_RS19350	COG3706	GGDEF domain
AL552_RS19365	COG3706	GGDEF domain
AL552_RS19380	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AL552_RS19400	COG3033	Beta-eliminating lyase
AL552_RS19410	COG1271	oxidase subunit
AL552_RS19415	COG1294	oxidase, subunit
AL552_RS19430	COG0579	oxidoreductase
AL552_RS19455	COG2199	diguanylate cyclase activity
AL552_RS19465	COG4191	Histidine kinase
AL552_RS19500	COG0583	DNA-binding transcription factor activity
AL552_RS19505	COG0189	ligase activity
AL552_RS19510	COG4067	protein conserved in archaea
AL552_RS19510	COG0189	ligase activity
AL552_RS19520	COG1166	arginine decarboxylase activity
AL552_RS19525	COG0010	Belongs to the arginase family
AL552_RS19530	COG2814	Major facilitator Superfamily
AL552_RS19535	COG1770	oligopeptidase
AL552_RS19550	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AL552_RS19555	COG1121	(ABC) transporter
AL552_RS19605	COG0848	biopolymer transport protein
AL552_RS19610	COG0811	peptide transport
AL552_RS19615	COG0811	peptide transport
AL552_RS19635	COG0745	RESPONSE REGULATOR receiver
AL552_RS19640	COG0039	L-malate dehydrogenase activity
AL552_RS19645	COG0584	glycerophosphoryl diester phosphodiesterase
AL552_RS19655	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AL552_RS19715	COG1901	pseudouridine methyltransferase
AL552_RS19720	COG0312	modulator of DNA gyrase
AL552_RS19725	COG0312	modulator of DNA gyrase
AL552_RS19730	COG0351	phosphomethylpyrimidine kinase
AL552_RS19735	COG1116	anion transmembrane transporter activity
AL552_RS19740	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL552_RS19745	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AL552_RS19750	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AL552_RS19755	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
AL552_RS19760	COG0352	thiamine-phosphate diphosphorylase activity
AL552_RS19770	COG0243	molybdopterin cofactor binding
AL552_RS19775	COG3005	denitrification pathway
AL552_RS19780	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AL552_RS19785	COG1028	Short-chain dehydrogenase reductase Sdr
AL552_RS19800	COG0456	acetyltransferase
AL552_RS19815	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL552_RS19820	COG1929	Belongs to the glycerate kinase type-1 family
AL552_RS19825	COG2610	gluconate transmembrane transporter activity
AL552_RS19830	COG3835	regulator
AL552_RS19855	COG0546	phosphoglycolate phosphatase activity
AL552_RS19870	COG0583	DNA-binding transcription factor activity
AL552_RS19890	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
AL552_RS19895	COG3408	Glycogen debranching enzyme
AL552_RS19895	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
AL552_RS19925	COG3047	cAMP biosynthetic process
AL552_RS19930	COG1357	PFAM Pentapeptide repeats (8 copies)
AL552_RS19965	COG2375	cellular response to nickel ion
AL552_RS19970	COG0583	DNA-binding transcription factor activity
AL552_RS19975	COG2162	N-hydroxyarylamine O-acetyltransferase activity
AL552_RS19980	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
AL552_RS19995	COG2199	diguanylate cyclase activity
AL552_RS20005	COG0561	phosphatase activity
AL552_RS20010	COG0583	DNA-binding transcription factor activity
AL552_RS20025	COG0564	pseudouridine synthase activity
AL552_RS20030	COG0534	Mate efflux family protein
AL552_RS20050	COG3123	guanosine phosphorylase activity
AL552_RS20065	COG0596	Alpha beta hydrolase
AL552_RS20090	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AL552_RS20100	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AL552_RS20105	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
AL552_RS20115	COG2259	Doxx family
AL552_RS20120	COG1741	Belongs to the pirin family
AL552_RS20140	COG0363	glucosamine-6-phosphate deaminase activity
AL552_RS20150	COG0786	glutamate:sodium symporter activity
AL552_RS20155	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL552_RS20170	COG0786	glutamate:sodium symporter activity
AL552_RS20195	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AL552_RS20205	COG3279	Response regulator of the LytR AlgR family
AL552_RS20210	COG3275	phosphorelay sensor kinase activity
AL552_RS20230	COG1136	(ABC) transporter
AL552_RS20245	COG0772	Belongs to the SEDS family
AL552_RS20270	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
AL552_RS20270	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AL552_RS20280	COG0444	Belongs to the ABC transporter superfamily
AL552_RS20285	COG4608	Belongs to the ABC transporter superfamily
AL552_RS20310	COG1444	tRNA N-acetyltransferase activity
AL552_RS20335	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AL552_RS20340	COG1263	PTS System
AL552_RS20340	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AL552_RS20345	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
AL552_RS20365	COG4166	transmembrane transport
AL552_RS20415	COG0259	pyridoxamine-phosphate oxidase activity
AL552_RS20440	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AL552_RS20475	COG1132	(ABC) transporter
AL552_RS20485	COG2207	Transcriptional regulator
AL552_RS20510	COG2258	MOSC domain
AL552_RS20530	COG1595	DNA-templated transcription, initiation
AL552_RS20565	COG3634	alkyl hydroperoxide reductase activity
AL552_RS20575	COG1846	Transcriptional regulator
AL552_RS20580	COG1764	response to oxidative stress
AL552_RS20595	COG0577	efflux transmembrane transporter activity
AL552_RS20600	COG1136	(ABC) transporter
AL552_RS20620	COG0463	Glycosyl transferase, family 2
AL552_RS20630	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AL552_RS20635	COG0826	peptidase U32
AL552_RS20665	COG1653	transport
AL552_RS20670	COG0019	diaminopimelate decarboxylase activity
AL552_RS20675	COG4264	IucA IucC family
AL552_RS20700	COG4772	TonB-dependent receptor
AL552_RS20705	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
AL552_RS20710	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AL552_RS20715	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AL552_RS20720	COG1120	ATPase activity
AL552_RS20730	COG0612	Peptidase, M16
AL552_RS20740	COG0739	heme binding
AL552_RS20775	COG1609	Transcriptional regulator
AL552_RS20800	COG1760	l-serine dehydratase
AL552_RS20830	COG2356	endonuclease I
AL552_RS20850	COG1982	Orn Lys Arg decarboxylase major
AL552_RS20855	COG0531	amino acid
AL552_RS20865	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
AL552_RS20870	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
AL552_RS20875	COG1162	GTPase activity
AL552_RS20880	COG1263	PTS System
AL552_RS20880	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AL552_RS20885	COG1999	signal sequence binding
AL552_RS20900	COG2909	trisaccharide binding
AL552_RS20910	COG0058	SHG alpha-glucan phosphorylase activity
AL552_RS20915	COG1640	4-alpha-glucanotransferase
AL552_RS20920	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
AL552_RS20925	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AL552_RS20930	COG0366	Alpha amylase catalytic
AL552_RS20945	COG3366	ferrous iron transmembrane transporter activity
AL552_RS20950	COG0700	Nucleoside recognition
AL552_RS20955	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AL552_RS20960	COG3339	Conserved Protein
AL552_RS20965	COG1301	dicarboxylic acid transport
AL552_RS20985	COG1596	polysaccharide export
AL552_RS21000	COG2095	MarC family integral membrane protein
AL552_RS21005	COG4667	esterase of the alpha-beta hydrolase superfamily
AL552_RS21010	COG3397	chitin binding
AL552_RS21015	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
AL552_RS21020	COG0415	Belongs to the DNA photolyase family
AL552_RS21030	COG1054	Belongs to the UPF0176 family
AL552_RS21045	COG1686	Belongs to the peptidase S11 family
AL552_RS21070	COG0583	DNA-binding transcription factor activity
AL552_RS21075	COG4628	conserved protein (DUF2132)
AL552_RS21090	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
AL552_RS21095	COG0628	permease
AL552_RS21105	COG1566	PFAM secretion protein HlyD family protein
AL552_RS21140	COG2814	Major facilitator Superfamily
AL552_RS21150	COG0454	-acetyltransferase
AL552_RS21160	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AL552_RS21165	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
AL552_RS21170	COG1882	Formate acetyltransferase
AL552_RS21225	COG1360	Flagellar Motor Protein
AL552_RS21230	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AL552_RS21235	COG1191	sigma factor activity
AL552_RS21240	COG1580	Controls the rotational direction of flagella during chemotaxis
AL552_RS21255	COG1516	flagellar protein fliS
AL552_RS21260	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
AL552_RS21270	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AL552_RS21285	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AL552_RS21295	COG1987	bacterial-type flagellum assembly
AL552_RS21335	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AL552_RS21390	COG0346	lactoylglutathione lyase activity
AL552_RS21415	COG0745	RESPONSE REGULATOR receiver
AL552_RS21435	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL552_RS21440	COG5001	Diguanylate cyclase
AL552_RS21440	COG3300	MHYT domain
AL552_RS21445	COG0156	8-amino-7-oxononanoate synthase activity
AL552_RS21450	COG1063	alcohol dehydrogenase
AL552_RS21460	COG0668	transmembrane transport
AL552_RS21470	COG1304	FMN binding
AL552_RS21475	COG1620	l-lactate permease
AL552_RS21480	COG0583	DNA-binding transcription factor activity
AL552_RS21485	COG1505	serine-type exopeptidase activity
AL552_RS21490	COG4172	Belongs to the ABC transporter superfamily
AL552_RS21510	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
AL552_RS21530	COG1247	-acetyltransferase
AL552_RS21535	COG0437	4 iron, 4 sulfur cluster binding
AL552_RS21540	COG0348	domain, Protein
AL552_RS21560	COG1122	ATPase activity
AL552_RS21565	COG4720	Psort location CytoplasmicMembrane, score
AL552_RS21570	COG1566	PFAM secretion protein HlyD family protein
AL552_RS21595	COG0813	purine-nucleoside phosphorylase activity
AL552_RS21605	COG3272	Protein of unknown function (DUF1722)
AL552_RS21610	COG0789	Transcriptional regulator
AL552_RS21615	COG0415	Belongs to the DNA photolyase family
AL552_RS21620	COG1388	LysM domain
AL552_RS21620	COG1376	ErfK ybiS ycfS ynhG family protein
AL552_RS21630	COG0513	Belongs to the DEAD box helicase family
AL552_RS21635	COG1770	oligopeptidase
AL552_RS21640	COG4771	TonB-dependent receptor
AL552_RS21670	COG0573	inorganic phosphate transmembrane transporter activity
AL552_RS21675	COG0581	inorganic phosphate transmembrane transporter activity
AL552_RS21680	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AL552_RS21695	COG2304	oxidoreductase activity
AL552_RS21700	COG2304	oxidoreductase activity
AL552_RS21715	COG0714	Associated with various cellular activities
AL552_RS21725	COG0840	transmembrane signaling receptor activity
AL552_RS21770	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
AL552_RS21775	COG1120	ATPase activity
AL552_RS21780	COG4774	siderophore transport
AL552_RS21785	COG1132	(ABC) transporter
AL552_RS21810	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL552_RS21825	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
AL552_RS21830	COG2197	response regulator
AL552_RS21845	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
AL552_RS21850	COG0252	asparaginase activity
AL552_RS21855	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
AL552_RS21860	COG0583	DNA-binding transcription factor activity
AL552_RS21870	COG1280	lysine exporter protein (LysE YggA)
AL552_RS21875	COG3122	Protein conserved in bacteria
AL552_RS21885	COG2423	ornithine cyclodeaminase activity
AL552_RS21890	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AL552_RS21895	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AL552_RS21900	COG1012	belongs to the aldehyde dehydrogenase family
AL552_RS21905	COG1522	sequence-specific DNA binding
AL552_RS21910	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AL552_RS21920	COG3608	succinylglutamate desuccinylase aspartoacylase
AL552_RS21930	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL552_RS21935	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AL552_RS21940	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AL552_RS21945	COG2207	Transcriptional regulator
AL552_RS21950	COG1028	Short-chain dehydrogenase reductase Sdr
AL552_RS21960	COG1063	alcohol dehydrogenase
AL552_RS21965	COG1902	pentaerythritol trinitrate reductase activity
AL552_RS21980	COG0583	DNA-binding transcription factor activity
AL552_RS21990	COG0513	Belongs to the DEAD box helicase family
AL552_RS22030	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL552_RS22035	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AL552_RS22035	COG2207	Transcriptional regulator
AL552_RS22055	COG3746	phosphate-selective porin O and P
AL552_RS22070	COG1028	Short-chain dehydrogenase reductase Sdr
AL552_RS22095	COG1263	PTS System
AL552_RS22095	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AL552_RS22100	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AL552_RS22105	COG1621	beta-fructofuranosidase activity
AL552_RS22115	COG0625	glutathione transferase activity
AL552_RS22125	COG1686	Belongs to the peptidase S11 family
AL552_RS22140	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
AL552_RS22155	COG1278	Cold shock
AL552_RS22160	COG1741	Belongs to the pirin family
AL552_RS22165	COG4667	esterase of the alpha-beta hydrolase superfamily
AL552_RS22190	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AL552_RS22200	COG2205	protein histidine kinase activity
AL552_RS22205	COG0745	RESPONSE REGULATOR receiver
AL552_RS22220	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AL552_RS22240	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AL552_RS22250	COG2814	Major facilitator Superfamily
AL552_RS22265	COG1418	mRNA catabolic process
AL552_RS22270	COG0402	S-adenosylhomocysteine deaminase activity
AL552_RS22275	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
AL552_RS22280	COG2239	Acts as a magnesium transporter
AL552_RS22285	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AL552_RS22290	COG1566	PFAM secretion protein HlyD family protein
AL552_RS22315	COG0745	RESPONSE REGULATOR receiver
AL552_RS22320	COG2205	protein histidine kinase activity
AL552_RS22335	COG0531	amino acid
AL552_RS22375	COG0784	Response regulator, receiver
AL552_RS22375	COG2205	protein histidine kinase activity
AL552_RS22375	COG5002	protein histidine kinase activity
AL552_RS22400	COG2827	Endonuclease containing a URI domain
AL552_RS22410	COG1879	ABC-type sugar transport system periplasmic component
AL552_RS22415	COG0784	Response regulator, receiver
AL552_RS22415	COG2205	protein histidine kinase activity
AL552_RS22475	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AL552_RS22490	COG1280	lysine exporter protein (LysE YggA)
AL552_RS22505	COG0183	Belongs to the thiolase family
AL552_RS22515	COG3243	poly(R)-hydroxyalkanoic acid synthase
AL552_RS22525	COG3005	denitrification pathway
AL552_RS22535	COG0243	molybdopterin cofactor binding
AL552_RS22545	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AL552_RS22550	COG3850	Histidine kinase
AL552_RS22555	COG2197	response regulator
AL552_RS22590	COG0840	transmembrane signaling receptor activity
AL552_RS22600	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AL552_RS22615	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
AL552_RS22620	COG2814	Major facilitator Superfamily
AL552_RS22625	COG0840	transmembrane signaling receptor activity
AL552_RS22630	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AL552_RS22635	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AL552_RS22665	COG2897	thiosulfate sulfurtransferase activity
AL552_RS22685	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AL552_RS22700	COG1914	H( )-stimulated, divalent metal cation uptake system
AL552_RS22710	COG0038	chloride channel
AL552_RS22725	COG4989	oxidoreductase activity
AL552_RS22740	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AL552_RS22740	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AL552_RS22750	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
AL552_RS22795	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL552_RS22810	COG1013	pyruvate-flavodoxin oxidoreductase activity
AL552_RS22840	COG2814	Major facilitator Superfamily
AL552_RS22860	COG0589	response to stress
AL552_RS22870	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AL552_RS22870	COG2111	Na H antiporter
AL552_RS22875	COG1006	Multisubunit Na H antiporter MnhC subunit
AL552_RS22880	COG0651	ATP synthesis coupled electron transport
AL552_RS22885	COG1863	multisubunit Na H antiporter MnhE subunit
AL552_RS22890	COG2212	antiporter activity
AL552_RS22895	COG1320	monovalent cation:proton antiporter activity
AL552_RS22900	COG2188	Transcriptional regulator
AL552_RS22905	COG1486	melibiose metabolic process
AL552_RS22910	COG1263	PTS System
AL552_RS22910	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AL552_RS22915	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AL552_RS22945	COG1022	Amp-dependent synthetase and ligase
AL552_RS23000	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AL552_RS23015	COG3527	Alpha-acetolactate decarboxylase
AL552_RS23025	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AL552_RS23040	COG1294	oxidase, subunit
AL552_RS23045	COG1271	oxidase subunit
AL552_RS23050	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AL552_RS23055	COG0110	maltose O-acetyltransferase activity
AL552_RS23070	COG3437	response regulator, receiver
AL552_RS23070	COG2205	protein histidine kinase activity
AL552_RS23070	COG3850	Histidine kinase
AL552_RS23070	COG4999	Histidine kinase
AL552_RS23080	COG4770	biotin carboxylase activity
AL552_RS23090	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AL552_RS23095	COG1960	acyl-CoA dehydrogenase activity
AL552_RS23105	COG0183	Belongs to the thiolase family
AL552_RS23115	COG1960	acyl-CoA dehydrogenase activity
AL552_RS23120	COG1024	Enoyl-CoA hydratase
AL552_RS23135	COG1028	Short-chain dehydrogenase reductase Sdr
AL552_RS23145	COG1309	transcriptional regulator
AL552_RS23150	COG1012	belongs to the aldehyde dehydrogenase family
AL552_RS23165	COG4176	ABC-type proline glycine betaine transport system permease component
AL552_RS23170	COG4175	Glycine betaine
AL552_RS23170	COG0517	IMP dehydrogenase activity
AL552_RS23185	COG0330	HflC and HflK could
AL552_RS23195	COG3300	MHYT domain
AL552_RS23195	COG5001	Diguanylate cyclase
AL552_RS23275	COG1869	D-ribose catabolic process
AL552_RS23280	COG1129	ABC transporter
AL552_RS23285	COG1172	Belongs to the binding-protein-dependent transport system permease family
AL552_RS23290	COG1879	ABC-type sugar transport system periplasmic component
AL552_RS23295	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AL552_RS23300	COG1609	Transcriptional regulator
AL552_RS23325	COG4607	ABC-type enterochelin transport system periplasmic component
AL552_RS23330	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AL552_RS23335	COG4605	iron ion homeostasis
AL552_RS23340	COG4604	ABC transporter, ATP-binding protein
AL552_RS23345	COG0789	Transcriptional regulator
AL552_RS23350	COG2207	Transcriptional regulator
AL552_RS23385	COG1289	transmembrane transporter activity
AL552_RS23390	COG0210	DNA helicase
AL552_RS23395	COG1803	Methylglyoxal synthase
AL552_RS23400	COG1879	ABC-type sugar transport system periplasmic component
AL552_RS23425	COG3119	arylsulfatase activity
AL552_RS23435	COG3119	arylsulfatase activity
AL552_RS23440	COG0641	radical SAM
AL552_RS23445	COG0714	Associated with various cellular activities
AL552_RS23475	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AL552_RS23475	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AL552_RS23480	COG0583	DNA-binding transcription factor activity
AL552_RS23485	COG1597	lipid kinase activity
AL552_RS23490	COG3111	PFAM Bacterial OB fold (BOF) protein
AL552_RS23515	COG0501	Belongs to the peptidase M48B family
AL552_RS23520	COG1704	LemA family
AL552_RS23525	COG3069	C4-dicarboxylate transmembrane transporter activity
AL552_RS23555	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
AL552_RS23565	COG3706	GGDEF domain
AL552_RS23575	COG2197	response regulator
AL552_RS23580	COG0784	Response regulator, receiver
AL552_RS23580	COG0835	chemotaxis
AL552_RS23595	COG2962	Rard protein
AL552_RS23660	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
AL552_RS23665	COG5642	Protein of unknown function (DUF2384)
AL552_RS23685	COG1902	pentaerythritol trinitrate reductase activity
AL552_RS23690	COG0346	lactoylglutathione lyase activity
AL552_RS23715	COG2239	Acts as a magnesium transporter
AL552_RS23745	COG0242	peptide deformylase activity
AL552_RS23785	COG2176	DNA-directed DNA polymerase activity
AL552_RS23810	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AL552_RS23820	COG0346	lactoylglutathione lyase activity
AL552_RS23825	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AL552_RS23825	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AL552_RS23830	COG0509	glycine decarboxylation via glycine cleavage system
AL552_RS23835	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AL552_RS23845	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AL552_RS23855	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AL552_RS23875	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AL552_RS23875	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AL552_RS23875	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
AL552_RS23885	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL552_RS23885	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AL552_RS23890	COG1609	Transcriptional regulator
AL552_RS23905	COG2203	Gaf domain
AL552_RS23905	COG2199	diguanylate cyclase activity
AL552_RS23905	COG2200	EAL domain
AL552_RS23910	COG0765	amino acid transport
AL552_RS23915	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL552_RS23920	COG0765	amino acid transport
AL552_RS23925	COG1126	abc transporter atp-binding protein
AL552_RS23930	COG0469	pyruvate kinase activity
AL552_RS23935	COG2271	Major facilitator Superfamily
AL552_RS23960	COG1979	alcohol dehydrogenase
AL552_RS23975	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
AL552_RS23980	COG2759	Belongs to the formate--tetrahydrofolate ligase family
AL552_RS23985	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AL552_RS24000	COG0546	phosphoglycolate phosphatase activity
AL552_RS24010	COG0840	transmembrane signaling receptor activity
AL552_RS24025	COG0513	Belongs to the DEAD box helicase family
AL552_RS24030	COG4943	cyclic-guanylate-specific phosphodiesterase activity
AL552_RS24045	COG3038	cytochrome b561
AL552_RS24050	COG2353	YceI-like domain
AL552_RS24055	COG2116	formate transmembrane transporter activity
AL552_RS24065	COG0583	DNA-binding transcription factor activity
AL552_RS24075	COG3593	DNA synthesis involved in DNA repair
AL552_RS24080	COG0737	Belongs to the 5'-nucleotidase family
AL552_RS24110	COG2067	long-chain fatty acid transport protein
AL552_RS24125	COG2050	protein possibly involved in aromatic compounds catabolism
AL552_RS24135	COG4533	DNA binding
AL552_RS24170	COG5001	Diguanylate cyclase
AL552_RS24170	COG1716	ATPase activity
AL552_RS24175	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AL552_RS24185	COG4181	ATPase activity
AL552_RS24190	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AL552_RS24200	COG1984	allophanate hydrolase subunit 2
AL552_RS24205	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
AL552_RS24210	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
AL552_RS24215	COG5001	Diguanylate cyclase
AL552_RS24215	COG3447	MASE1 domain protein
AL552_RS24215	COG5002	protein histidine kinase activity
AL552_RS24220	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AL552_RS24235	COG0583	DNA-binding transcription factor activity
AL552_RS24240	COG0045	succinate-CoA ligase (ADP-forming) activity
AL552_RS24240	COG1042	CoA-binding domain protein
AL552_RS24240	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AL552_RS24255	COG1181	Belongs to the D-alanine--D-alanine ligase family
AL552_RS24265	COG0023	Translation Initiation Factor
AL552_RS24305	COG4128	Pfam Zonular occludens toxin
AL552_RS24340	COG0583	DNA-binding transcription factor activity
AL552_RS24350	COG0589	response to stress
AL552_RS24355	COG3140	Belongs to the UPF0181 family
AL552_RS24380	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
AL552_RS24385	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
AL552_RS24410	COG3706	GGDEF domain
AL552_RS24410	COG2203	Gaf domain
AL552_RS24410	COG4251	negative regulation of phosphorylation
AL552_RS24410	COG5001	Diguanylate cyclase
AL552_RS24420	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AL552_RS24425	COG4149	molybdate abc transporter
AL552_RS24430	COG0725	ABC transporter, periplasmic molybdate-binding protein
AL552_RS24450	COG0189	ligase activity
AL552_RS24450	COG4067	protein conserved in archaea
AL552_RS24460	COG2207	Transcriptional regulator
AL552_RS24465	COG0534	Mate efflux family protein
AL552_RS24470	COG0602	queuosine metabolic process
AL552_RS24475	COG1328	CTP reductase activity
AL552_RS24490	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AL552_RS24520	COG1794	racemase activity, acting on amino acids and derivatives
AL552_RS24525	COG0384	phenazine biosynthesis protein PhzF
AL552_RS24535	COG0243	molybdopterin cofactor binding
AL552_RS24545	COG0583	DNA-binding transcription factor activity
AL552_RS24550	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AL552_RS24560	COG2197	response regulator
AL552_RS24565	COG3851	Histidine kinase
AL552_RS24570	COG2271	Major facilitator Superfamily
AL552_RS24600	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AL552_RS24605	COG3118	belongs to the thioredoxin family
AL552_RS24640	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
AL552_RS24660	COG2116	formate transmembrane transporter activity
AL552_RS24670	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AL552_RS24675	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
AL552_RS24685	COG5001	Diguanylate cyclase
AL552_RS24760	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AL552_RS24795	COG0277	FAD linked oxidase domain protein
AL552_RS24800	COG0583	DNA-binding transcription factor activity
AL552_RS24815	COG2425	protein containing a von Willebrand factor type A (vWA) domain
AL552_RS24830	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
AL552_RS24840	COG1288	antiporter activity
AL552_RS24850	COG3040	lipid binding
AL552_RS24860	COG0419	ATPase involved in DNA repair
AL552_RS24865	COG0420	3'-5' exonuclease activity
AL552_RS24935	COG0631	protein serine/threonine phosphatase activity
AL552_RS24975	COG2815	serine threonine protein kinase
AL552_RS24975	COG0515	serine threonine protein kinase
AL552_RS25025	COG2146	nitrite reductase [NAD(P)H] activity
AL552_RS25025	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AL552_RS25030	COG1116	anion transmembrane transporter activity
AL552_RS25035	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AL552_RS25040	COG1116	anion transmembrane transporter activity
AL552_RS25040	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AL552_RS25060	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AL552_RS25080	COG0814	amino acid
AL552_RS25155	COG2847	Copper chaperone PCu(A)C
AL552_RS25160	COG0443	Heat shock 70 kDa protein
AL552_RS25235	COG4160	amino acid transport
AL552_RS25240	COG4215	(ABC) transporter
AL552_RS25245	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AL552_RS25250	COG1126	abc transporter atp-binding protein
AL552_RS25280	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family