VF_0001 PF00258 Flavodoxin VF_0002 PF01926 50S ribosome-binding GTPase VF_0002 PF10396 GTP-binding protein TrmE N-terminus VF_0002 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE VF_0003 PF02096 60Kd inner membrane protein VF_0003 PF14849 YidC periplasmic domain VF_0004 PF00825 Ribonuclease P VF_0005 PF00468 Ribosomal protein L34 VF_0006 PF00005 ABC transporter VF_0007 PF00528 Binding-protein-dependent transport system inner membrane component VF_0008 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_0009 PF00308 Bacterial dnaA protein VF_0009 PF08299 Bacterial dnaA protein helix-turn-helix VF_0009 PF11638 DnaA N-terminal domain VF_0010 PF00712 DNA polymerase III beta subunit, N-terminal domain VF_0010 PF02767 DNA polymerase III beta subunit, central domain VF_0010 PF02768 DNA polymerase III beta subunit, C-terminal domain VF_0011 PF02463 RecF/RecN/SMC N terminal domain VF_0012 PF00204 DNA gyrase B VF_0012 PF00986 DNA gyrase B subunit, carboxyl terminus VF_0012 PF01751 Toprim domain VF_0012 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0013 PF00011 Hsp20/alpha crystallin family VF_0014 PF00155 Aminotransferase class I and II VF_0015 PF02091 Glycyl-tRNA synthetase alpha subunit VF_0016 PF02092 VF_0016 VF_0016 PF05746 DALR anticodon binding domain VF_0017 PF00128 Alpha amylase, catalytic domain VF_0019 PF01206 Sulfurtransferase TusA VF_0021 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0021 PF03466 LysR substrate binding domain VF_0022 PF05360 VF_0022 VF_0023 PF00107 Zinc-binding dehydrogenase VF_0023 PF08240 Alcohol dehydrogenase GroES-like domain VF_0024 PF00108 Thiolase, N-terminal domain VF_0024 PF02803 Thiolase, C-terminal domain VF_0025 PF00378 Enoyl-CoA hydratase/isomerase family VF_0025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VF_0025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VF_0026 PF01205 Uncharacterized protein family UPF0029 VF_0026 PF09186 Domain of unknown function (DUF1949) VF_0027 PF02386 Cation transport protein VF_0028 PF12724 Flavodoxin domain VF_0029 PF00675 Insulinase (Peptidase family M16) VF_0029 PF05193 Peptidase M16 inactive domain VF_0031 PF00654 Voltage gated chloride channel VF_0032 PF01964 ThiC family VF_0032 PF13667 ThiC-associated domain VF_0033 PF02581 Thiamine monophosphate synthase/TENI VF_0034 PF00899 ThiF family VF_0035 PF05690 Thiazole biosynthesis protein ThiG VF_0036 PF04055 Radical SAM superfamily VF_0036 PF06968 Biotin and Thiamin Synthesis associated domain VF_0037 PF00728 Glycosyl hydrolase family 20, catalytic domain VF_0037 PF02838 Glycosyl hydrolase family 20, domain 2 VF_0038 PF00557 Metallopeptidase family M24 VF_0038 PF01321 Creatinase/Prolidase N-terminal domain VF_0038 PF16188 VF_0038 VF_0038 PF16189 VF_0038 VF_0040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0040 PF03466 LysR substrate binding domain VF_0041 PF07690 Major Facilitator Superfamily VF_0043 PF00892 EamA-like transporter family VF_0044 PF02646 VF_0044 VF_0046 PF01209 ubiE/COQ5 methyltransferase family VF_0047 PF02036 SCP-2 sterol transfer family VF_0048 PF03109 VF_0048 VF_0049 PF02416 mttA/Hcf106 family VF_0050 PF02416 mttA/Hcf106 family VF_0051 PF00902 Sec-independent protein translocase protein (TatC) VF_0052 PF01026 TatD related DNase VF_0053 PF00490 Delta-aminolevulinic acid dehydratase VF_0054 PF02541 Ppx/GppA phosphatase family VF_0056 PF00270 DEAD/DEAH box helicase VF_0056 PF00271 Helicase conserved C-terminal domain VF_0057 PF00085 Thioredoxin VF_0058 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VF_0058 PF07497 Rho termination factor, RNA-binding domain VF_0058 PF07498 Rho termination factor, N-terminal domain VF_0060 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VF_0061 PF00111 2Fe-2S iron-sulfur cluster binding domain VF_0062 PF00175 Oxidoreductase NAD-binding domain VF_0062 PF00970 Oxidoreductase FAD-binding domain VF_0063 PF07219 VF_0063 VF_0064 PF04375 VF_0064 VF_0065 PF02602 Uroporphyrinogen-III synthase HemD VF_0066 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VF_0066 PF03900 Porphobilinogen deaminase, C-terminal domain VF_0067 PF01295 VF_0067 VF_0067 PF12633 VF_0067 VF_0068 PF00580 UvrD/REP helicase N-terminal domain VF_0068 PF13361 UvrD-like helicase C-terminal domain VF_0069 PF00892 EamA-like transporter family VF_0070 PF00270 DEAD/DEAH box helicase VF_0070 PF00271 Helicase conserved C-terminal domain VF_0070 PF00570 HRDC domain VF_0070 PF09382 RQC domain VF_0070 PF16124 VF_0070 VF_0071 PF12305 VF_0071 VF_0072 PF07690 Major Facilitator Superfamily VF_0073 PF02592 VF_0073 VF_0074 PF00476 DNA polymerase family A VF_0074 PF01367 5'-3' exonuclease, C-terminal SAM fold VF_0074 PF01612 3'-5' exonuclease VF_0074 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VF_0075 PF01926 50S ribosome-binding GTPase VF_0076 PF00034 Cytochrome c VF_0077 PF13489 Methyltransferase domain VF_0078 PF04220 VF_0078 VF_0079 PF10675 VF_0079 VF_0080 PF04055 Radical SAM superfamily VF_0080 PF06969 HemN C-terminal domain VF_0081 PF01037 AsnC family VF_0081 PF13404 AsnC-type helix-turn-helix domain VF_0082 PF04445 Putative SAM-dependent methyltransferase VF_0083 PF00582 Universal stress protein family VF_0084 PF00210 Ferritin-like domain VF_0085 PF10625 VF_0085 VF_0086 PF03486 HI0933-like protein VF_0087 PF00563 EAL domain VF_0087 PF00990 GGDEF domain VF_0087 PF08495 VF_0087 VF_0087 PF10442 VF_0087 VF_0088 PF03942 VF_0088 VF_0090 PF01081 KDPG and KHG aldolase VF_0091 PF00563 EAL domain VF_0091 PF00672 HAMP domain VF_0091 PF00990 GGDEF domain VF_0091 PF02743 Cache domain VF_0093 PF00962 Adenosine/AMP deaminase VF_0094 PF00563 EAL domain VF_0094 PF00672 HAMP domain VF_0094 PF00990 GGDEF domain VF_0094 PF02743 Cache domain VF_0095 PF00072 Response regulator receiver domain VF_0095 PF00158 Sigma-54 interaction domain VF_0095 PF02954 Bacterial regulatory protein, Fis family VF_0096 PF00512 His Kinase A (phospho-acceptor) domain VF_0096 PF00989 PAS fold VF_0096 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0097 PF13511 VF_0097 VF_0098 PF00120 Glutamine synthetase, catalytic domain VF_0098 PF03951 Glutamine synthetase, beta-Grasp domain VF_0099 PF00009 Elongation factor Tu GTP binding domain VF_0099 PF00679 Elongation factor G C-terminus VF_0099 PF03144 Elongation factor Tu domain 2 VF_0100 PF03631 VF_0100 VF_0101 PF02580 D-Tyr-tRNA(Tyr) deacylase VF_0102 PF09500 Putative thioesterase (yiiD_Cterm) VF_0102 PF13673 Acetyltransferase (GNAT) domain VF_0103 PF00588 SpoU rRNA Methylase family VF_0103 PF12105 SpoU, rRNA methylase, C-terminal VF_0104 PF02824 TGS domain VF_0104 PF04607 Region found in RelA / SpoT proteins VF_0104 PF13291 ACT domain VF_0104 PF13328 HD domain VF_0105 PF01192 RNA polymerase Rpb6 VF_0106 PF00625 Guanylate kinase VF_0107 PF06146 VF_0107 VF_0109 PF00892 EamA-like transporter family VF_0110 PF03755 VF_0110 VF_0110 PF08340 VF_0110 VF_0111 PF01138 3' exoribonuclease family, domain 1 VF_0111 PF03725 3' exoribonuclease family, domain 2 VF_0112 PF00156 Phosphoribosyl transferase domain VF_0113 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VF_0114 PF00072 Response regulator receiver domain VF_0114 PF00486 Transcriptional regulatory protein, C terminal VF_0115 PF00512 His Kinase A (phospho-acceptor) domain VF_0115 PF00672 HAMP domain VF_0115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0116 PF00860 Permease family VF_0117 PF00156 Phosphoribosyl transferase domain VF_0118 PF00561 alpha/beta hydrolase fold VF_0120 PF00575 S1 RNA binding domain VF_0120 PF09371 Tex-like protein N-terminal domain VF_0120 PF12836 Helix-hairpin-helix motif VF_0120 PF16921 VF_0120 VF_0121 PF01272 Transcription elongation factor, GreA/GreB, C-term VF_0121 PF03449 Transcription elongation factor, N-terminal VF_0122 PF03279 VF_0122 VF_0124 PF00440 Bacterial regulatory proteins, tetR family VF_0125 PF02441 Flavoprotein VF_0125 PF04127 DNA / pantothenate metabolism flavoprotein VF_0126 PF04002 RadC-like JAB domain VF_0127 PF00830 Ribosomal L28 family VF_0128 PF00471 Ribosomal protein L33 VF_0130 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VF_0130 PF06827 Zinc finger found in FPG and IleRS VF_0130 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VF_0131 PF00884 Sulfatase VF_0132 PF01467 Cytidylyltransferase VF_0133 PF00534 Glycosyl transferases group 1 VF_0134 PF00535 Glycosyl transferase family 2 VF_0135 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VF_0136 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family VF_0137 PF00884 Sulfatase VF_0137 PF11893 VF_0137 VF_0138 PF00534 Glycosyl transferases group 1 VF_0138 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VF_0139 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VF_0140 PF02719 Polysaccharide biosynthesis protein VF_0141 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VF_0142 PF02350 UDP-N-acetylglucosamine 2-epimerase VF_0143 PF03102 NeuB family VF_0143 PF08666 SAF domain VF_0144 PF00132 Bacterial transferase hexapeptide (six repeats) VF_0145 PF00483 Nucleotidyl transferase VF_0145 PF00571 CBS domain VF_0146 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VF_0147 PF02348 Cytidylyltransferase VF_0148 PF13561 Enoyl-(Acyl carrier protein) reductase VF_0149 PF00534 Glycosyl transferases group 1 VF_0151 PF04932 VF_0151 VF_0152 PF01370 NAD dependent epimerase/dehydratase family VF_0153 PF00753 Metallo-beta-lactamase superfamily VF_0153 PF07521 RNA-metabolising metallo-beta-lactamase VF_0153 PF10996 Beta-Casp domain VF_0154 PF05635 23S rRNA-intervening sequence protein VF_0155 PF00440 Bacterial regulatory proteins, tetR family VF_0155 PF13972 Bacterial transcriptional repressor VF_0157 PF06082 VF_0157 VF_0158 PF06251 Capsule biosynthesis GfcC VF_0160 PF11102 Group 4 capsule polysaccharide formation lipoprotein gfcB VF_0162 PF02563 Polysaccharide biosynthesis/export protein VF_0162 PF10531 SLBB domain VF_0163 PF05635 23S rRNA-intervening sequence protein VF_0164 PF01451 Low molecular weight phosphotyrosine protein phosphatase VF_0165 PF02706 Chain length determinant protein VF_0165 PF13614 AAA domain VF_0165 PF13807 VF_0165 VF_0166 PF16363 VF_0166 VF_0167 PF00483 Nucleotidyl transferase VF_0168 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VF_0169 PF01370 NAD dependent epimerase/dehydratase family VF_0170 PF01943 VF_0170 VF_0172 PF00132 Bacterial transferase hexapeptide (six repeats) VF_0174 PF00535 Glycosyl transferase family 2 VF_0175 PF00535 Glycosyl transferase family 2 VF_0176 PF00793 DAHP synthetase I family VF_0177 PF08282 haloacid dehalogenase-like hydrolase VF_0178 PF02348 Cytidylyltransferase VF_0179 PF00571 CBS domain VF_0179 PF01380 SIS domain VF_0180 PF00953 Glycosyl transferase family 4 VF_0181 PF00111 2Fe-2S iron-sulfur cluster binding domain VF_0181 PF00175 Oxidoreductase NAD-binding domain VF_0181 PF00970 Oxidoreductase FAD-binding domain VF_0182 PF00483 Nucleotidyl transferase VF_0183 PF16363 VF_0183 VF_0184 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VF_0185 PF00205 Thiamine pyrophosphate enzyme, central domain VF_0185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VF_0185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VF_0186 PF01370 NAD dependent epimerase/dehydratase family VF_0187 PF00535 Glycosyl transferase family 2 VF_0188 PF00535 Glycosyl transferase family 2 VF_0189 PF01943 VF_0189 VF_0191 PF02719 Polysaccharide biosynthesis protein VF_0191 PF08485 Polysaccharide biosynthesis protein C-terminal VF_0192 PF01370 NAD dependent epimerase/dehydratase family VF_0193 PF02350 UDP-N-acetylglucosamine 2-epimerase VF_0194 PF13692 Glycosyl transferases group 1 VF_0195 PF01370 NAD dependent epimerase/dehydratase family VF_0196 PF02397 VF_0196 VF_0197 PF02719 Polysaccharide biosynthesis protein VF_0197 PF13727 CoA-binding domain VF_0200 PF02272 DHHA1 domain VF_0201 PF16363 VF_0201 VF_0202 PF01676 Metalloenzyme superfamily VF_0202 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VF_0203 PF01554 MatE VF_0204 PF00166 Chaperonin 10 Kd subunit VF_0205 PF00118 TCP-1/cpn60 chaperonin family VF_0206 PF00121 Triosephosphate isomerase VF_0207 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase VF_0208 PF11333 VF_0208 VF_0209 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VF_0210 PF06005 Protein of unknown function (DUF904) VF_0211 PF03737 Demethylmenaquinone methyltransferase VF_0212 PF01040 UbiA prenyltransferase family VF_0214 PF00485 Phosphoribulokinase / Uridine kinase family VF_0215 PF06794 Uncharacterised protein family (UPF0270) VF_0216 PF00561 alpha/beta hydrolase fold VF_0217 PF09523 VF_0217 VF_0218 PF00005 ABC transporter VF_0218 PF12848 ABC transporter VF_0219 PF02525 Flavodoxin-like fold VF_0220 PF00999 Sodium/hydrogen exchanger family VF_0220 PF02254 TrkA-N domain VF_0222 PF09526 VF_0222 VF_0223 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VF_0224 PF04102 SlyX VF_0225 PF00400 WD domain, G-beta repeat VF_0226 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VF_0226 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VF_0227 PF08348 VF_0227 VF_0227 PF13309 VF_0227 VF_0228 PF02635 DsrE/DsrF-like family VF_0229 PF02635 DsrE/DsrF-like family VF_0230 PF00164 Ribosomal protein S12/S23 VF_0231 PF00177 Ribosomal protein S7p/S5e VF_0232 PF00009 Elongation factor Tu GTP binding domain VF_0232 PF00679 Elongation factor G C-terminus VF_0232 PF03144 Elongation factor Tu domain 2 VF_0232 PF03764 Elongation factor G, domain IV VF_0232 PF14492 Elongation Factor G, domain II VF_0233 PF00009 Elongation factor Tu GTP binding domain VF_0233 PF03143 Elongation factor Tu C-terminal domain VF_0233 PF03144 Elongation factor Tu domain 2 VF_0234 PF00338 Ribosomal protein S10p/S20e VF_0235 PF00297 Ribosomal protein L3 VF_0237 PF00573 Ribosomal protein L4/L1 family VF_0238 PF00276 Ribosomal protein L23 VF_0239 PF00181 Ribosomal Proteins L2, RNA binding domain VF_0239 PF03947 Ribosomal Proteins L2, C-terminal domain VF_0240 PF00203 Ribosomal protein S19 VF_0241 PF00237 Ribosomal protein L22p/L17e VF_0242 PF00189 Ribosomal protein S3, C-terminal domain VF_0242 PF07650 KH domain VF_0243 PF00252 Ribosomal protein L16p/L10e VF_0244 PF00831 Ribosomal L29 protein VF_0245 PF00366 Ribosomal protein S17 VF_0246 PF00238 Ribosomal protein L14p/L23e VF_0248 PF17136 VF_0248 VF_0249 PF00281 Ribosomal protein L5 VF_0249 PF00673 ribosomal L5P family C-terminus VF_0250 PF00253 Ribosomal protein S14p/S29e VF_0251 PF00410 Ribosomal protein S8 VF_0252 PF00347 Ribosomal protein L6 VF_0253 PF00861 Ribosomal L18p/L5e family VF_0254 PF00333 Ribosomal protein S5, N-terminal domain VF_0254 PF03719 Ribosomal protein S5, C-terminal domain VF_0255 PF00327 Ribosomal protein L30p/L7e VF_0256 PF00828 Ribosomal protein L18e/L15 VF_0257 PF00344 SecY translocase VF_0258 PF00444 Ribosomal protein L36 VF_0259 PF00416 Ribosomal protein S13/S18 VF_0260 PF00411 Ribosomal protein S11 VF_0261 PF00163 Ribosomal protein S4/S9 N-terminal domain VF_0261 PF01479 S4 domain VF_0262 PF01000 RNA polymerase Rpb3/RpoA insert domain VF_0262 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VF_0262 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VF_0263 PF01196 Ribosomal protein L17 VF_0264 PF00316 Fructose-1-6-bisphosphatase VF_0265 PF01225 Mur ligase family, catalytic domain VF_0265 PF02875 Mur ligase family, glutamate ligase domain VF_0265 PF08245 Mur ligase middle domain VF_0266 PF02441 Flavoprotein VF_0267 PF13343 Bacterial extracellular solute-binding protein VF_0269 PF00005 ABC transporter VF_0270 PF00176 SNF2 family N-terminal domain VF_0270 PF00271 Helicase conserved C-terminal domain VF_0270 PF12137 RNA polymerase recycling family C-terminal VF_0271 PF00849 RNA pseudouridylate synthase VF_0272 PF00582 Universal stress protein family VF_0273 PF06808 VF_0273 VF_0273 PF11874 VF_0273 VF_0274 PF16868 VF_0274 VF_0275 PF01316 Arginine repressor, DNA binding domain VF_0275 PF02863 Arginine repressor, C-terminal domain VF_0276 PF00056 lactate/malate dehydrogenase, NAD binding domain VF_0276 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VF_0277 PF00348 Polyprenyl synthetase VF_0278 PF00829 Ribosomal prokaryotic L21 protein VF_0279 PF01016 Ribosomal L27 protein VF_0280 PF01018 GTP1/OBG VF_0280 PF01926 50S ribosome-binding GTPase VF_0281 PF06738 VF_0281 VF_0283 PF12821 VF_0283 VF_0284 PF00186 Dihydrofolate reductase VF_0285 PF00149 Calcineurin-like phosphoesterase VF_0286 PF00398 Ribosomal RNA adenine dimethylase VF_0287 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VF_0288 PF09312 SurA N-terminal domain VF_0288 PF13616 PPIC-type PPIASE domain VF_0289 PF03968 OstA-like protein VF_0289 PF04453 Organic solvent tolerance protein VF_0290 PF00226 DnaJ domain VF_0290 PF05099 Tellurite resistance protein TerB VF_0291 PF04784 VF_0291 VF_0292 PF00694 Aconitase C-terminal domain VF_0293 PF00330 Aconitase family (aconitate hydratase) VF_0294 PF00180 Isocitrate/isopropylmalate dehydrogenase VF_0295 PF00682 HMGL-like VF_0295 PF08502 LeuA allosteric (dimerisation) domain VF_0296 PF00440 Bacterial regulatory proteins, tetR family VF_0298 PF00873 AcrB/AcrD/AcrF family VF_0300 PF04338 Protein of unknown function, DUF481 VF_0301 PF00772 DnaB-like helicase N terminal domain VF_0301 PF03796 DnaB-like helicase C terminal domain VF_0302 PF00842 Alanine racemase, C-terminal domain VF_0302 PF01168 Alanine racemase, N-terminal domain VF_0304 PF00342 Phosphoglucose isomerase VF_0305 PF13690 Chemotaxis phosphatase CheX VF_0306 PF01475 Ferric uptake regulator family VF_0307 PF01207 Dihydrouridine synthase (Dus) VF_0310 PF00175 Oxidoreductase NAD-binding domain VF_0310 PF00258 Flavodoxin VF_0310 PF00667 FAD binding domain VF_0311 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VF_0311 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VF_0312 PF01507 Phosphoadenosine phosphosulfate reductase family VF_0313 PF11075 VF_0313 VF_0314 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VF_0314 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VF_0315 PF04225 Opacity-associated protein A LysM-like domain VF_0315 PF08525 VF_0315 VF_0316 PF00892 EamA-like transporter family VF_0317 PF13673 Acetyltransferase (GNAT) domain VF_0318 PF00027 Cyclic nucleotide-binding domain VF_0319 PF00149 Calcineurin-like phosphoesterase VF_0319 PF02872 5'-nucleotidase, C-terminal domain VF_0320 PF01507 Phosphoadenosine phosphosulfate reductase family VF_0321 PF00009 Elongation factor Tu GTP binding domain VF_0322 PF02080 TrkA-C domain VF_0322 PF03600 Citrate transporter VF_0323 PF01583 Adenylylsulphate kinase VF_0324 PF10987 VF_0324 VF_0325 PF11736 Protein of unknown function (DUF3299) VF_0326 PF02687 VF_0326 VF_0326 PF12704 MacB-like periplasmic core domain VF_0327 PF00005 ABC transporter VF_0328 PF10986 VF_0328 VF_0329 PF09695 VF_0329 VF_0330 PF06526 Protein of unknown function (DUF1107) VF_0331 PF01625 Peptide methionine sulfoxide reductase VF_0332 PF01103 Surface antigen VF_0332 PF07244 Surface antigen variable number repeat VF_0333 PF04357 VF_0333 VF_0336 PF00999 Sodium/hydrogen exchanger family VF_0337 PF00809 Pterin binding enzyme VF_0337 PF02310 B12 binding domain VF_0337 PF02574 Homocysteine S-methyltransferase VF_0337 PF02607 B12 binding domain VF_0337 PF02965 Vitamin B12 dependent methionine synthase, activation domain VF_0338 PF00696 Amino acid kinase family VF_0339 PF00266 Aminotransferase class-V VF_0340 PF04932 VF_0340 VF_0340 PF11846 VF_0340 VF_0340 PF15864 VF_0340 VF_0341 PF00005 ABC transporter VF_0342 PF00483 Nucleotidyl transferase VF_0344 PF00534 Glycosyl transferases group 1 VF_0344 PF13439 Glycosyltransferase Family 4 VF_0345 PF00534 Glycosyl transferases group 1 VF_0345 PF13439 Glycosyltransferase Family 4 VF_0346 PF00535 Glycosyl transferase family 2 VF_0349 PF02706 Chain length determinant protein VF_0349 PF06564 YhjQ protein VF_0349 PF13807 VF_0349 VF_0350 PF02563 Polysaccharide biosynthesis/export protein VF_0350 PF10531 SLBB domain VF_0351 PF10082 VF_0351 VF_0352 PF02397 VF_0352 VF_0352 PF13727 CoA-binding domain VF_0353 PF00436 Single-strand binding protein family VF_0355 PF00563 EAL domain VF_0355 PF00990 GGDEF domain VF_0355 PF17157 VF_0355 VF_0357 PF04612 Type II secretion system (T2SS), protein M VF_0359 PF00263 VF_0359 VF_0359 PF07655 VF_0359 VF_0360 PF13401 AAA domain VF_0362 PF00437 Type II/IV secretion system protein VF_0362 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VF_0363 PF00482 Type II secretion system (T2SS), protein F VF_0365 PF13633 Prokaryotic N-terminal methylation site VF_0366 PF13633 Prokaryotic N-terminal methylation site VF_0367 PF13544 VF_0367 VF_0372 PF06723 MreB/Mbl protein VF_0373 PF04085 rod shape-determining protein MreC VF_0374 PF04093 VF_0374 VF_0375 PF02545 Maf-like protein VF_0376 PF10150 Ribonuclease E/G family VF_0377 PF13116 VF_0377 VF_0377 PF13502 VF_0377 VF_0378 PF00795 Carbon-nitrogen hydrolase VF_0379 PF01523 Putative modulator of DNA gyrase VF_0380 PF04751 Protein of unknown function (DUF615) VF_0381 PF01523 Putative modulator of DNA gyrase VF_0382 PF00571 CBS domain VF_0382 PF01769 Divalent cation transporter VF_0382 PF03448 MgtE intracellular N domain VF_0383 PF00381 PTS HPr component phosphorylation site VF_0384 PF03668 VF_0384 VF_0385 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VF_0386 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VF_0387 PF00309 VF_0387 VF_0387 PF04552 Sigma-54, DNA binding domain VF_0387 PF04963 Sigma-54 factor, core binding domain VF_0388 PF00005 ABC transporter VF_0388 PF12399 Branched-chain amino acid ATP-binding cassette transporter VF_0389 PF03968 OstA-like protein VF_0390 PF06835 Lipopolysaccharide-assembly, LptC-related VF_0391 PF08282 haloacid dehalogenase-like hydrolase VF_0392 PF00571 CBS domain VF_0392 PF01380 SIS domain VF_0393 PF01699 Sodium/calcium exchanger protein VF_0394 PF00005 ABC transporter VF_0395 PF02405 VF_0395 VF_0396 PF02470 VF_0396 VF_0397 PF05494 Toluene tolerance, Ttg2 VF_0399 PF13466 STAS domain VF_0400 PF01722 BolA-like protein VF_0401 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VF_0402 PF01553 Acyltransferase VF_0403 PF00293 NUDIX domain VF_0404 PF01042 Endoribonuclease L-PSP VF_0405 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VF_0405 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VF_0406 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VF_0406 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VF_0407 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VF_0407 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VF_0408 PF02274 Amidinotransferase VF_0409 PF06877 Regulator of ribonuclease activity B VF_0410 PF02837 Glycosyl hydrolases family 2, sugar binding domain VF_0411 PF00133 tRNA synthetases class I (I, L, M and V) VF_0411 PF08264 Anticodon-binding domain of tRNA VF_0411 PF10458 Valyl tRNA synthetase tRNA binding arm VF_0412 PF04364 DNA polymerase III chi subunit, HolC VF_0413 PF00883 Cytosol aminopeptidase family, catalytic domain VF_0413 PF02789 Cytosol aminopeptidase family, N-terminal domain VF_0414 PF03739 VF_0414 VF_0415 PF03739 VF_0415 VF_0416 PF06271 VF_0416 VF_0417 PF11212 VF_0417 VF_0418 PF01219 Prokaryotic diacylglycerol kinase VF_0420 PF01464 Transglycosylase SLT domain VF_0420 PF11873 Domain of unknown function (DUF3393) VF_0421 PF04362 Bacterial Fe(2+) trafficking VF_0422 PF00633 Helix-hairpin-helix motif VF_0422 PF00730 HhH-GPD superfamily base excision DNA repair protein VF_0422 PF10576 Iron-sulfur binding domain of endonuclease III VF_0422 PF14815 NUDIX domain VF_0423 PF04960 Glutaminase VF_0424 PF04055 Radical SAM superfamily VF_0425 PF01725 Ham1 family VF_0426 PF14467 Domain of unknown function (DUF4426) VF_0427 PF02594 Uncharacterised ACR, YggU family COG1872 VF_0428 PF02325 VF_0428 VF_0429 PF03807 NADP oxidoreductase coenzyme F420-dependent VF_0429 PF14748 Pyrroline-5-carboxylate reductase dimerisation VF_0430 PF01168 Alanine racemase, N-terminal domain VF_0431 PF00437 Type II/IV secretion system protein VF_0432 PF00437 Type II/IV secretion system protein VF_0433 PF03652 Uncharacterised protein family (UPF0081) VF_0434 PF02622 Uncharacterized ACR, COG1678 VF_0435 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VF_0435 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VF_0436 PF04452 RNA methyltransferase VF_0437 PF04231 Endonuclease I VF_0438 PF10263 VF_0438 VF_0439 PF00438 S-adenosylmethionine synthetase, N-terminal domain VF_0439 PF02772 S-adenosylmethionine synthetase, central domain VF_0439 PF02773 S-adenosylmethionine synthetase, C-terminal domain VF_0440 PF00456 Transketolase, thiamine diphosphate binding domain VF_0440 PF02779 Transketolase, pyrimidine binding domain VF_0440 PF02780 Transketolase, C-terminal domain VF_0441 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VF_0441 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VF_0442 PF00162 Phosphoglycerate kinase VF_0443 PF01116 Fructose-bisphosphate aldolase class-II VF_0444 PF00270 DEAD/DEAH box helicase VF_0444 PF00271 Helicase conserved C-terminal domain VF_0445 PF05175 Methyltransferase small domain VF_0446 PF05525 VF_0446 VF_0447 PF00258 Flavodoxin VF_0448 PF00589 Phage integrase family VF_0448 PF02899 Phage integrase, N-terminal SAM-like domain VF_0449 PF10411 Disulfide bond isomerase protein N-terminus VF_0449 PF13098 Thioredoxin-like domain VF_0450 PF01368 DHH family VF_0450 PF02272 DHHA1 domain VF_0453 PF00152 tRNA synthetases class II (D, K and N) VF_0454 PF00158 Sigma-54 interaction domain VF_0454 PF02954 Bacterial regulatory protein, Fis family VF_0455 PF02976 DNA mismatch repair enzyme MutH VF_0456 PF00293 NUDIX domain VF_0457 PF00391 PEP-utilising enzyme, mobile domain VF_0457 PF01590 GAF domain VF_0457 PF02896 PEP-utilising enzyme, TIM barrel domain VF_0457 PF05524 PEP-utilising enzyme, N-terminal VF_0458 PF01925 VF_0458 VF_0459 PF01790 VF_0459 VF_0460 PF00303 Thymidylate synthase VF_0461 PF02690 VF_0461 VF_0462 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0462 PF03466 LysR substrate binding domain VF_0463 PF01022 Bacterial regulatory protein, arsR family VF_0464 PF01649 Ribosomal protein S20 VF_0465 PF03023 VF_0465 VF_0466 PF01687 Riboflavin kinase VF_0466 PF06574 FAD synthetase VF_0467 PF00133 tRNA synthetases class I (I, L, M and V) VF_0467 PF06827 Zinc finger found in FPG and IleRS VF_0467 PF08264 Anticodon-binding domain of tRNA VF_0468 PF01252 VF_0468 VF_0469 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VF_0470 PF02401 LytB protein VF_0471 PF01113 Dihydrodipicolinate reductase, N-terminus VF_0471 PF05173 Dihydrodipicolinate reductase, C-terminus VF_0472 PF00117 Glutamine amidotransferase class-I VF_0472 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VF_0473 PF02142 MGS-like domain VF_0473 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VF_0473 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VF_0474 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VF_0475 PF13609 Gram-negative porin VF_0476 PF01272 Transcription elongation factor, GreA/GreB, C-term VF_0476 PF03449 Transcription elongation factor, N-terminal VF_0477 PF01985 CRS1 / YhbY (CRM) domain VF_0478 PF01728 FtsJ-like methyltransferase VF_0479 PF00004 ATPase family associated with various cellular activities (AAA) VF_0479 PF01434 Peptidase family M41 VF_0479 PF06480 FtsH Extracellular VF_0480 PF00809 Pterin binding enzyme VF_0481 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VF_0481 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VF_0481 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VF_0481 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VF_0483 PF03840 Preprotein translocase SecG subunit VF_0484 PF02576 Uncharacterised BCR, YhbC family COG0779 VF_0485 PF00575 S1 RNA binding domain VF_0485 PF08529 NusA N-terminal domain VF_0485 PF13184 NusA-like KH domain VF_0485 PF14520 Helix-hairpin-helix domain VF_0486 PF00009 Elongation factor Tu GTP binding domain VF_0486 PF04760 Translation initiation factor IF-2, N-terminal region VF_0486 PF08364 VF_0486 VF_0486 PF11987 Translation-initiation factor 2 VF_0487 PF02033 Ribosome-binding factor A VF_0488 PF01509 TruB family pseudouridylate synthase (N terminal domain) VF_0488 PF09157 Pseudouridine synthase II TruB, C-terminal VF_0488 PF16198 VF_0488 VF_0489 PF00312 Ribosomal protein S15 VF_0490 PF00013 KH domain VF_0490 PF00575 S1 RNA binding domain VF_0490 PF01138 3' exoribonuclease family, domain 1 VF_0490 PF03725 3' exoribonuclease family, domain 2 VF_0490 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VF_0491 PF13181 Tetratricopeptide repeat VF_0492 PF01136 VF_0492 VF_0493 PF01136 VF_0493 VF_0494 PF00563 EAL domain VF_0494 PF00990 GGDEF domain VF_0494 PF08448 PAS fold VF_0494 PF13426 PAS domain VF_0495 PF02036 SCP-2 sterol transfer family VF_0496 PF13527 Acetyltransferase (GNAT) domain VF_0498 PF03603 DNA polymerase III psi subunit VF_0499 PF00583 Acetyltransferase (GNAT) family VF_0500 PF00009 Elongation factor Tu GTP binding domain VF_0500 PF03144 Elongation factor Tu domain 2 VF_0500 PF16658 VF_0500 VF_0501 PF01026 TatD related DNase VF_0502 PF01773 Na+ dependent nucleoside transporter N-terminus VF_0502 PF07662 Na+ dependent nucleoside transporter C-terminus VF_0502 PF07670 Nucleoside recognition VF_0503 PF07235 VF_0503 VF_0504 PF01791 DeoC/LacD family aldolase VF_0505 PF00591 Glycosyl transferase family, a/b domain VF_0505 PF02885 Glycosyl transferase family, helical bundle domain VF_0505 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VF_0506 PF01676 Metalloenzyme superfamily VF_0507 PF01048 Phosphorylase superfamily VF_0508 PF10144 VF_0508 VF_0509 PF12710 haloacid dehalogenase-like hydrolase VF_0510 PF04964 VF_0510 VF_0511 PF01478 Type IV leader peptidase family VF_0512 PF16976 VF_0512 VF_0513 PF00263 VF_0513 VF_0513 PF13629 VF_0513 VF_0516 PF00437 Type II/IV secretion system protein VF_0517 PF00482 Type II secretion system (T2SS), protein F VF_0518 PF00482 Type II secretion system (T2SS), protein F VF_0521 PF16964 VF_0521 VF_0522 PF13400 VF_0522 VF_0523 PF00691 OmpA family VF_0524 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0526 PF00072 Response regulator receiver domain VF_0526 PF00486 Transcriptional regulatory protein, C terminal VF_0527 PF07238 PilZ domain VF_0528 PF13481 AAA domain VF_0528 PF13541 Subunit ChlI of Mg-chelatase VF_0529 PF00009 Elongation factor Tu GTP binding domain VF_0529 PF00679 Elongation factor G C-terminus VF_0529 PF03144 Elongation factor Tu domain 2 VF_0529 PF03764 Elongation factor G, domain IV VF_0529 PF14492 Elongation Factor G, domain II VF_0530 PF09905 Uncharacterized conserved protein (DUF2132) VF_0531 PF07969 Amidohydrolase family VF_0532 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VF_0533 PF00501 AMP-binding enzyme VF_0534 PF00488 MutS domain V VF_0534 PF01624 MutS domain I VF_0534 PF05188 MutS domain II VF_0534 PF05190 MutS family domain IV VF_0534 PF05192 MutS domain III VF_0535 PF00154 recA bacterial DNA recombination protein VF_0536 PF01411 tRNA synthetases class II (A) VF_0536 PF02272 DHHA1 domain VF_0536 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VF_0537 PF00696 Amino acid kinase family VF_0538 PF02599 Global regulator protein family VF_0539 PF00364 Biotin-requiring enzyme VF_0539 PF00682 HMGL-like VF_0539 PF02436 Conserved carboxylase domain VF_0540 PF03977 VF_0540 VF_0541 PF09335 VF_0541 VF_0542 PF00675 Insulinase (Peptidase family M16) VF_0542 PF05193 Peptidase M16 inactive domain VF_0543 PF04262 Glutamate-cysteine ligase VF_0545 PF02664 S-Ribosylhomocysteinase (LuxS) VF_0546 PF00571 CBS domain VF_0546 PF01595 VF_0546 VF_0546 PF03471 Transporter associated domain VF_0547 PF01578 VF_0547 VF_0548 PF00448 SRP54-type protein, GTPase domain VF_0548 PF02881 SRP54-type protein, helical bundle domain VF_0548 PF02978 Signal peptide binding domain VF_0549 PF00886 Ribosomal protein S16 VF_0550 PF01782 RimM N-terminal domain VF_0550 PF05239 PRC-barrel domain VF_0551 PF01746 tRNA (Guanine-1)-methyltransferase VF_0552 PF01245 Ribosomal protein L19 VF_0553 PF00793 DAHP synthetase I family VF_0554 PF01817 Chorismate mutase type II VF_0554 PF02153 Prephenate dehydrogenase VF_0555 PF01551 Peptidase family M23 VF_0556 PF07238 PilZ domain VF_0557 PF00005 ABC transporter VF_0557 PF12848 ABC transporter VF_0558 PF01464 Transglycosylase SLT domain VF_0558 PF14718 Soluble lytic murein transglycosylase L domain VF_0559 PF01371 Trp repressor protein VF_0560 PF01931 Protein of unknown function DUF84 VF_0561 PF00800 Prephenate dehydratase VF_0561 PF01817 Chorismate mutase type II VF_0562 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VF_0563 PF13525 Outer membrane lipoprotein VF_0564 PF00849 RNA pseudouridylate synthase VF_0564 PF01479 S4 domain VF_0565 PF02578 Multi-copper polyphenol oxidoreductase laccase VF_0566 PF00004 ATPase family associated with various cellular activities (AAA) VF_0566 PF02861 Clp amino terminal domain VF_0566 PF07724 AAA domain (Cdc48 subfamily) VF_0566 PF10431 C-terminal, D2-small domain, of ClpB protein VF_0568 PF13633 Prokaryotic N-terminal methylation site VF_0571 PF12019 Type II transport protein GspH VF_0571 PF13633 Prokaryotic N-terminal methylation site VF_0572 PF13544 VF_0572 VF_0572 PF16732 VF_0572 VF_0573 PF02417 VF_0573 VF_0574 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0574 PF03466 LysR substrate binding domain VF_0575 PF01679 VF_0575 VF_0576 PF14602 Hexapeptide repeat of succinyl-transferase VF_0576 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VF_0577 PF07130 YebG protein VF_0578 PF01786 Alternative oxidase VF_0579 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0579 PF03466 LysR substrate binding domain VF_0580 PF03595 Voltage-dependent anion channel VF_0581 PF04257 Exodeoxyribonuclease V, gamma subunit VF_0582 PF00580 UvrD/REP helicase N-terminal domain VF_0582 PF12705 PD-(D/E)XK nuclease superfamily VF_0582 PF13361 UvrD-like helicase C-terminal domain VF_0583 PF13538 UvrD-like helicase C-terminal domain VF_0583 PF13604 AAA domain VF_0584 PF00893 Small Multidrug Resistance protein VF_0585 PF00583 Acetyltransferase (GNAT) family VF_0585 PF00696 Amino acid kinase family VF_0586 PF11012 VF_0586 VF_0587 PF03562 MltA specific insert domain VF_0587 PF06725 3D domain VF_0588 PF00899 ThiF family VF_0589 PF02657 Fe-S metabolism associated domain VF_0590 PF00266 Aminotransferase class-V VF_0591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0591 PF03466 LysR substrate binding domain VF_0592 PF04241 VF_0592 VF_0593 PF01728 FtsJ-like methyltransferase VF_0594 PF01367 5'-3' exonuclease, C-terminal SAM fold VF_0594 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VF_0595 PF03641 Possible lysine decarboxylase VF_0595 PF11892 Domain of unknown function (DUF3412) VF_0595 PF14793 Domain of unknown function (DUF4478) VF_0596 PF00990 GGDEF domain VF_0598 PF14489 QueF-like protein VF_0598 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VF_0599 PF07348 Syd protein (SUKH-2) VF_0600 PF10071 VF_0600 VF_0601 PF02639 VF_0601 VF_0603 PF02378 Phosphotransferase system, EIIC VF_0604 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VF_0605 PF00232 Glycosyl hydrolase family 1 VF_0606 PF00480 ROK family VF_0607 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VF_0608 PF00356 Bacterial regulatory proteins, lacI family VF_0608 PF13377 Periplasmic binding protein-like domain VF_0609 PF02264 LamB porin VF_0610 PF11743 VF_0610 VF_0611 PF12069 VF_0611 VF_0612 PF04287 tRNA pseudouridine synthase C VF_0613 PF00849 RNA pseudouridylate synthase VF_0614 PF00459 Inositol monophosphatase family VF_0615 PF00588 SpoU rRNA Methylase family VF_0616 PF02082 Transcriptional regulator VF_0617 PF00266 Aminotransferase class-V VF_0618 PF01592 NifU-like N terminal domain VF_0619 PF01521 Iron-sulphur cluster biosynthesis VF_0620 PF07743 HSCB C-terminal oligomerisation domain VF_0621 PF00012 Hsp70 protein VF_0622 PF00111 2Fe-2S iron-sulfur cluster binding domain VF_0623 PF04384 Iron-sulphur cluster assembly VF_0624 PF00883 Cytosol aminopeptidase family, catalytic domain VF_0624 PF12404 VF_0624 VF_0625 PF00334 Nucleoside diphosphate kinase VF_0626 PF04055 Radical SAM superfamily VF_0627 PF13181 Tetratricopeptide repeat VF_0627 PF13424 Tetratricopeptide repeat VF_0628 PF13413 Helix-turn-helix domain VF_0628 PF13464 VF_0628 VF_0629 PF04551 GcpE protein VF_0630 PF03129 Anticodon binding domain VF_0630 PF13393 Histidyl-tRNA synthetase VF_0631 PF09976 Tetratricopeptide repeat VF_0632 PF13360 PQQ-like domain VF_0633 PF01926 50S ribosome-binding GTPase VF_0633 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VF_0635 PF07191 zinc-ribbons VF_0636 PF02601 VF_0636 VF_0636 PF13742 VF_0636 VF_0637 PF00478 IMP dehydrogenase / GMP reductase domain VF_0637 PF00571 CBS domain VF_0638 PF00117 Glutamine amidotransferase class-I VF_0638 PF00958 GMP synthase C terminal domain VF_0638 PF02540 NAD synthase VF_0639 PF03806 VF_0639 VF_0640 PF08348 VF_0640 VF_0640 PF13309 VF_0640 VF_0641 PF03313 VF_0641 VF_0642 PF01042 Endoribonuclease L-PSP VF_0644 PF00756 Putative esterase VF_0645 PF00107 Zinc-binding dehydrogenase VF_0645 PF08240 Alcohol dehydrogenase GroES-like domain VF_0646 PF01323 DSBA-like thioredoxin domain VF_0647 PF00375 Sodium:dicarboxylate symporter family VF_0648 PF00107 Zinc-binding dehydrogenase VF_0648 PF08240 Alcohol dehydrogenase GroES-like domain VF_0649 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0649 PF03466 LysR substrate binding domain VF_0650 PF14437 VF_0650 VF_0651 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_0651 PF01464 Transglycosylase SLT domain VF_0652 PF02769 AIR synthase related protein, C-terminal domain VF_0652 PF13507 CobB/CobQ-like glutamine amidotransferase domain VF_0653 PF00588 SpoU rRNA Methylase family VF_0654 PF12286 VF_0654 VF_0655 PF00704 Glycosyl hydrolases family 18 VF_0655 PF02839 Carbohydrate binding domain VF_0656 PF01272 Transcription elongation factor, GreA/GreB, C-term VF_0657 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VF_0658 PF08443 RimK-like ATP-grasp domain VF_0659 PF05618 Putative ATP-dependant zinc protease VF_0660 PF00209 Sodium:neurotransmitter symporter family VF_0661 PF14056 VF_0661 VF_0662 PF06786 VF_0662 VF_0663 PF00701 Dihydrodipicolinate synthetase family VF_0664 PF01380 SIS domain VF_0664 PF01418 Helix-turn-helix domain, rpiR family VF_0665 PF01979 Amidohydrolase family VF_0666 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VF_0667 PF00480 ROK family VF_0668 PF00474 Sodium:solute symporter family VF_0669 PF04074 Domain of unknown function (DUF386) VF_0670 PF02492 CobW/HypB/UreG, nucleotide-binding domain VF_0671 PF01730 UreF VF_0672 PF02814 UreE urease accessory protein, N-terminal domain VF_0672 PF05194 UreE urease accessory protein, C-terminal domain VF_0673 PF00449 Urease alpha-subunit, N-terminal domain VF_0673 PF01979 Amidohydrolase family VF_0674 PF00699 Urease beta subunit VF_0675 PF00547 Urease, gamma subunit VF_0676 PF01774 UreD urease accessory protein VF_0677 PF00005 ABC transporter VF_0678 PF00005 ABC transporter VF_0679 PF00528 Binding-protein-dependent transport system inner membrane component VF_0680 PF00528 Binding-protein-dependent transport system inner membrane component VF_0681 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_0682 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VF_0682 PF03129 Anticodon binding domain VF_0682 PF04073 Aminoacyl-tRNA editing domain VF_0683 PF01980 Uncharacterised protein family UPF0066 VF_0684 PF03180 NLPA lipoprotein VF_0685 PF00528 Binding-protein-dependent transport system inner membrane component VF_0686 PF00005 ABC transporter VF_0686 PF09383 NIL domain VF_0687 PF13242 HAD-hyrolase-like VF_0688 PF00528 Binding-protein-dependent transport system inner membrane component VF_0689 PF00528 Binding-protein-dependent transport system inner membrane component VF_0690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_0691 PF00005 ABC transporter VF_0691 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_0692 PF00005 ABC transporter VF_0692 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_0693 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme VF_0694 PF02588 VF_0694 VF_0695 PF00464 Serine hydroxymethyltransferase VF_0696 PF13322 VF_0696 VF_0696 PF13402 Peptidase M60-like family VF_0698 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_0698 PF08376 Nitrate and nitrite sensing VF_0699 PF03477 ATP cone domain VF_0700 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VF_0700 PF01872 RibD C-terminal domain VF_0701 PF00677 Lumazine binding domain VF_0702 PF00925 GTP cyclohydrolase II VF_0702 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VF_0703 PF00885 6,7-dimethyl-8-ribityllumazine synthase VF_0704 PF01029 NusB family VF_0705 PF00586 AIR synthase related protein, N-terminal domain VF_0705 PF02769 AIR synthase related protein, C-terminal domain VF_0706 PF04608 Phosphatidylglycerophosphatase A VF_0707 PF13407 Periplasmic binding protein domain VF_0708 PF00072 Response regulator receiver domain VF_0708 PF00512 His Kinase A (phospho-acceptor) domain VF_0708 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0708 PF09308 LuxQ, periplasmic VF_0710 PF03992 Antibiotic biosynthesis monooxygenase VF_0711 PF02779 Transketolase, pyrimidine binding domain VF_0711 PF02780 Transketolase, C-terminal domain VF_0711 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VF_0712 PF00348 Polyprenyl synthetase VF_0713 PF02609 Exonuclease VII small subunit VF_0714 PF01618 VF_0714 VF_0715 PF00691 OmpA family VF_0715 PF13677 VF_0715 VF_0716 PF02568 Thiamine biosynthesis protein (ThiI) VF_0716 PF02926 THUMP domain VF_0717 PF01965 DJ-1/PfpI family VF_0718 PF02558 Ketopantoate reductase PanE/ApbA VF_0718 PF08546 Ketopantoate reductase PanE/ApbA C terminal VF_0719 PF03502 Nucleoside-specific channel-forming protein, Tsx VF_0720 PF07690 Major Facilitator Superfamily VF_0721 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VF_0722 PF03923 VF_0722 VF_0723 PF05175 Methyltransferase small domain VF_0723 PF08468 Methyltransferase small domain N-terminal VF_0724 PF01722 BolA-like protein VF_0725 PF05896 VF_0725 VF_0725 PF11973 VF_0725 VF_0726 PF03116 VF_0726 VF_0727 PF04205 FMN-binding domain VF_0728 PF02508 VF_0728 VF_0729 PF02508 VF_0729 VF_0731 PF00111 2Fe-2S iron-sulfur cluster binding domain VF_0731 PF00175 Oxidoreductase NAD-binding domain VF_0731 PF00970 Oxidoreductase FAD-binding domain VF_0732 PF02424 ApbE family VF_0733 PF04400 VF_0733 VF_0734 PF00817 impB/mucB/samB family VF_0734 PF11799 impB/mucB/samB family C-terminal domain VF_0735 PF00842 Alanine racemase, C-terminal domain VF_0735 PF01168 Alanine racemase, N-terminal domain VF_0736 PF01546 Peptidase family M20/M25/M40 VF_0736 PF07687 Peptidase dimerisation domain VF_0737 PF00860 Permease family VF_0738 PF00156 Phosphoribosyl transferase domain VF_0739 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VF_0740 PF00696 Amino acid kinase family VF_0740 PF01472 PUA domain VF_0741 PF00171 Aldehyde dehydrogenase family VF_0742 PF04055 Radical SAM superfamily VF_0742 PF16881 VF_0742 VF_0743 PF03099 Biotin/lipoate A/B protein ligase family VF_0744 PF04359 Protein of unknown function (DUF493) VF_0745 PF00768 D-alanyl-D-alanine carboxypeptidase VF_0745 PF07943 Penicillin-binding protein 5, C-terminal domain VF_0746 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel VF_0746 PF05036 Sporulation related domain VF_0747 PF01098 VF_0747 VF_0748 PF00905 Penicillin binding protein transpeptidase domain VF_0748 PF03717 Penicillin-binding Protein dimerisation domain VF_0749 PF02590 Predicted SPOUT methyltransferase VF_0750 PF02410 Oligomerisation domain VF_0751 PF06144 DNA polymerase III, delta subunit VF_0751 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VF_0752 PF04390 Lipopolysaccharide-assembly VF_0753 PF00133 tRNA synthetases class I (I, L, M and V) VF_0753 PF08264 Anticodon-binding domain of tRNA VF_0753 PF13603 Leucyl-tRNA synthetase, Domain 2 VF_0754 PF07295 VF_0754 VF_0755 PF00795 Carbon-nitrogen hydrolase VF_0756 PF00571 CBS domain VF_0756 PF03471 Transporter associated domain VF_0757 PF02130 Uncharacterized protein family UPF0054 VF_0758 PF02562 PhoH-like protein VF_0759 PF00919 Uncharacterized protein family UPF0004 VF_0759 PF01938 TRAM domain VF_0759 PF04055 Radical SAM superfamily VF_0760 PF01266 FAD dependent oxidoreductase VF_0760 PF01494 FAD binding domain VF_0762 PF01926 50S ribosome-binding GTPase VF_0762 PF06071 Protein of unknown function (DUF933) VF_0763 PF01195 Peptidyl-tRNA hydrolase VF_0764 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VF_0764 PF14572 Phosphoribosyl synthetase-associated domain VF_0765 PF00288 GHMP kinases N terminal domain VF_0765 PF08544 GHMP kinases C terminal VF_0766 PF03550 Outer membrane lipoprotein LolB VF_0767 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VF_0767 PF01488 Shikimate / quinate 5-dehydrogenase VF_0767 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VF_0768 PF00472 RF-1 domain VF_0768 PF03462 PCRF domain VF_0769 PF13847 Methyltransferase domain VF_0770 PF04247 VF_0770 VF_0771 PF13369 VF_0771 VF_0771 PF13371 Tetratricopeptide repeat VF_0772 PF00793 DAHP synthetase I family VF_0773 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VF_0774 PF01226 Formate/nitrite transporter VF_0775 PF13806 Rieske-like [2Fe-2S] domain VF_0776 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VF_0776 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VF_0776 PF04324 BFD-like [2Fe-2S] binding domain VF_0776 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_0777 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_0777 PF00672 HAMP domain VF_0777 PF02743 Cache domain VF_0778 PF00149 Calcineurin-like phosphoesterase VF_0778 PF02872 5'-nucleotidase, C-terminal domain VF_0779 PF01713 Smr domain VF_0780 PF04214 VF_0780 VF_0781 PF00122 E1-E2 ATPase VF_0781 PF00403 Heavy-metal-associated domain VF_0781 PF00702 haloacid dehalogenase-like hydrolase VF_0782 PF00376 MerR family regulatory protein VF_0782 PF09278 MerR, DNA binding VF_0783 PF00085 Thioredoxin VF_0783 PF14559 Tetratricopeptide repeat VF_0783 PF14561 Tetratricopeptide repeat VF_0784 PF00106 short chain dehydrogenase VF_0785 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VF_0786 PF00528 Binding-protein-dependent transport system inner membrane component VF_0787 PF00005 ABC transporter VF_0787 PF00571 CBS domain VF_0788 PF01370 NAD dependent epimerase/dehydratase family VF_0788 PF08338 Domain of unknown function (DUF1731) VF_0789 PF12850 Calcineurin-like phosphoesterase superfamily domain VF_0791 PF00486 Transcriptional regulatory protein, C terminal VF_0792 PF00183 Hsp90 protein VF_0792 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_0793 PF00406 Adenylate kinase VF_0793 PF05191 Adenylate kinase, active site lid VF_0794 PF00762 Ferrochelatase VF_0795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VF_0795 PF05697 Bacterial trigger factor protein (TF) VF_0795 PF05698 Bacterial trigger factor protein (TF) C-terminus VF_0796 PF00574 Clp protease VF_0797 PF06689 ClpX C4-type zinc finger VF_0797 PF07724 AAA domain (Cdc48 subfamily) VF_0797 PF10431 C-terminal, D2-small domain, of ClpB protein VF_0798 PF00004 ATPase family associated with various cellular activities (AAA) VF_0798 PF02190 ATP-dependent protease La (LON) domain VF_0798 PF05362 Lon protease (S16) C-terminal proteolytic domain VF_0799 PF00216 Bacterial DNA-binding protein VF_0800 PF00639 PPIC-type PPIASE domain VF_0800 PF13624 SurA N-terminal domain VF_0801 PF12836 Helix-hairpin-helix motif VF_0802 PF00854 POT family VF_0803 PF02357 Transcription termination factor nusG VF_0804 PF00733 Asparagine synthase VF_0804 PF13537 Glutamine amidotransferase domain VF_0805 PF00999 Sodium/hydrogen exchanger family VF_0805 PF02254 TrkA-N domain VF_0806 PF00480 ROK family VF_0806 PF01047 MarR family VF_0807 PF01979 Amidohydrolase family VF_0808 PF00367 phosphotransferase system, EIIB VF_0808 PF02378 Phosphotransferase system, EIIC VF_0809 PF00749 tRNA synthetases class I (E and Q), catalytic domain VF_0809 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VF_0810 PF01475 Ferric uptake regulator family VF_0811 PF14539 Domain of unknown function (DUF4442) VF_0812 PF00258 Flavodoxin VF_0813 PF10981 VF_0813 VF_0814 PF12697 Alpha/beta hydrolase family VF_0815 PF03925 SeqA protein VF_0816 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VF_0816 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VF_0816 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VF_0816 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VF_0817 PF01784 NIF3 (NGG1p interacting factor 3) VF_0818 PF00285 Citrate synthase VF_0819 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VF_0820 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VF_0821 PF00890 FAD binding domain VF_0821 PF02910 Fumarate reductase flavoprotein C-term VF_0822 PF13085 2Fe-2S iron-sulfur cluster binding domain VF_0822 PF13534 4Fe-4S dicluster domain VF_0823 PF00676 Dehydrogenase E1 component VF_0823 PF02779 Transketolase, pyrimidine binding domain VF_0823 PF16078 VF_0823 VF_0823 PF16870 VF_0823 VF_0824 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VF_0824 PF00364 Biotin-requiring enzyme VF_0824 PF02817 e3 binding domain VF_0825 PF00549 CoA-ligase VF_0825 PF08442 ATP-grasp domain VF_0826 PF00549 CoA-ligase VF_0826 PF02629 CoA binding domain VF_0827 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_0827 PF17200 VF_0827 VF_0828 PF00950 VF_0828 VF_0829 PF00005 ABC transporter VF_0830 PF01297 Periplasmic solute binding protein family VF_0831 PF01551 Peptidase family M23 VF_0831 PF04225 Opacity-associated protein A LysM-like domain VF_0831 PF08525 VF_0831 VF_0832 PF07494 Two component regulator propeller VF_0832 PF12833 Helix-turn-helix domain VF_0833 PF04023 FeoA domain VF_0834 PF02421 Ferrous iron transport protein B VF_0834 PF07664 VF_0834 VF_0834 PF07670 Nucleoside recognition VF_0835 PF09012 FeoC like transcriptional regulator VF_0836 PF01515 Phosphate acetyl/butaryl transferase VF_0836 PF07085 DRTGG domain VF_0836 PF13500 AAA domain VF_0837 PF00871 Acetokinase family VF_0838 PF04217 VF_0838 VF_0839 PF00750 tRNA synthetases class I (R) VF_0839 PF03485 Arginyl tRNA synthetase N terminal domain VF_0839 PF05746 DALR anticodon binding domain VF_0840 PF06185 YecM protein VF_0841 PF04820 Tryptophan halogenase VF_0842 PF00891 O-methyltransferase VF_0844 PF13723 VF_0844 VF_0845 PF01553 Acyltransferase VF_0846 PF00550 Phosphopantetheine attachment site VF_0847 PF00550 Phosphopantetheine attachment site VF_0849 PF00501 AMP-binding enzyme VF_0849 PF13193 AMP-binding enzyme C-terminal domain VF_0850 PF07977 FabA-like domain VF_0851 PF00535 Glycosyl transferase family 2 VF_0851 PF03279 VF_0851 VF_0852 PF00221 Aromatic amino acid lyase VF_0853 PF13279 Thioesterase-like superfamily VF_0854 PF03548 Outer membrane lipoprotein carrier protein LolA VF_0855 PF03176 MMPL family VF_0856 PF11659 VF_0856 VF_0857 PF00109 Beta-ketoacyl synthase, N-terminal domain VF_0857 PF02801 Beta-ketoacyl synthase, C-terminal domain VF_0859 PF13561 Enoyl-(Acyl carrier protein) reductase VF_0860 PF00109 Beta-ketoacyl synthase, N-terminal domain VF_0860 PF02801 Beta-ketoacyl synthase, C-terminal domain VF_0861 PF03724 META domain VF_0862 PF01386 Ribosomal L25p family VF_0863 PF01322 Cytochrome C' VF_0864 PF00271 Helicase conserved C-terminal domain VF_0864 PF04851 Type III restriction enzyme, res subunit VF_0865 PF13091 PLD-like domain VF_0868 PF14317 VF_0868 VF_0869 PF09857 VF_0869 VF_0870 PF13508 Acetyltransferase (GNAT) domain VF_0871 PF00440 Bacterial regulatory proteins, tetR family VF_0872 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_0872 PF13682 Chemoreceptor zinc-binding domain VF_0874 PF02355 Protein export membrane protein VF_0874 PF07549 SecD/SecF GG Motif VF_0875 PF02355 Protein export membrane protein VF_0875 PF13721 SecD export protein N-terminal TM region VF_0877 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_0877 PF03466 LysR substrate binding domain VF_0878 PF16576 VF_0878 VF_0879 PF07690 Major Facilitator Superfamily VF_0880 PF00849 RNA pseudouridylate synthase VF_0880 PF01479 S4 domain VF_0881 PF07690 Major Facilitator Superfamily VF_0882 PF11140 VF_0882 VF_0883 PF11066 VF_0883 VF_0883 PF13460 NADH(P)-binding VF_0884 PF00005 ABC transporter VF_0885 PF02687 VF_0885 VF_0886 PF07143 Hydroxyneurosporene synthase (CrtC) VF_0886 PF17186 VF_0886 VF_0887 PF06965 Na+/H+ antiporter 1 VF_0888 PF07055 Enoyl reductase FAD binding domain VF_0888 PF12241 Trans-2-enoyl-CoA reductase catalytic region VF_0888 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VF_0889 PF02080 TrkA-C domain VF_0889 PF06826 VF_0889 VF_0890 PF00462 Glutaredoxin VF_0891 PF01380 SIS domain VF_0891 PF01418 Helix-turn-helix domain, rpiR family VF_0892 PF00282 Pyridoxal-dependent decarboxylase conserved domain VF_0894 PF03956 VF_0894 VF_0895 PF08668 HDOD domain VF_0896 PF04993 TfoX N-terminal domain VF_0896 PF04994 TfoX C-terminal domain VF_0898 PF06097 VF_0898 VF_0899 PF00266 Aminotransferase class-V VF_0900 PF00005 ABC transporter VF_0900 PF00664 ABC transporter transmembrane region VF_0901 PF00005 ABC transporter VF_0901 PF00664 ABC transporter transmembrane region VF_0902 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_0903 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VF_0903 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VF_0904 PF01037 AsnC family VF_0904 PF13412 Winged helix-turn-helix DNA-binding VF_0905 PF01580 FtsK/SpoIIIE family VF_0905 PF09397 Ftsk gamma domain VF_0905 PF13491 VF_0905 VF_0906 PF03548 Outer membrane lipoprotein carrier protein LolA VF_0907 PF00004 ATPase family associated with various cellular activities (AAA) VF_0907 PF12002 MgsA AAA+ ATPase C terminal VF_0907 PF16193 VF_0907 VF_0908 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VF_0908 PF02403 Seryl-tRNA synthetase N-terminal domain VF_0909 PF00085 Thioredoxin VF_0910 PF04269 Protein of unknown function, DUF440 VF_0911 PF00294 pfkB family carbohydrate kinase VF_0912 PF01263 Aldose 1-epimerase VF_0913 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VF_0913 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VF_0914 PF01641 SelR domain VF_0915 PF11207 VF_0915 VF_0916 PF07023 VF_0916 VF_0917 PF00520 Ion transport protein VF_0918 PF00171 Aldehyde dehydrogenase family VF_0918 PF00465 Iron-containing alcohol dehydrogenase VF_0919 PF13561 Enoyl-(Acyl carrier protein) reductase VF_0920 PF11993 VF_0920 VF_0921 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VF_0921 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VF_0922 PF00462 Glutaredoxin VF_0923 PF00072 Response regulator receiver domain VF_0924 PF03553 VF_0924 VF_0924 PF13726 VF_0924 VF_0925 PF00929 Exonuclease VF_0926 PF00691 OmpA family VF_0927 PF10952 VF_0927 VF_0928 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VF_0929 PF00633 Helix-hairpin-helix motif VF_0929 PF00730 HhH-GPD superfamily base excision DNA repair protein VF_0930 PF02508 VF_0930 VF_0931 PF04205 FMN-binding domain VF_0932 PF03116 VF_0932 VF_0933 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VF_0933 PF10531 SLBB domain VF_0933 PF13237 4Fe-4S dicluster domain VF_0933 PF13375 RnfC Barrel sandwich hybrid domain VF_0934 PF04060 Putative Fe-S cluster VF_0934 PF14697 4Fe-4S dicluster domain VF_0935 PF02508 VF_0935 VF_0936 PF00271 Helicase conserved C-terminal domain VF_0936 PF02151 UvrB/uvrC motif VF_0936 PF04851 Type III restriction enzyme, res subunit VF_0936 PF12344 Ultra-violet resistance protein B VF_0937 PF00072 Response regulator receiver domain VF_0937 PF00158 Sigma-54 interaction domain VF_0937 PF02954 Bacterial regulatory protein, Fis family VF_0938 PF01627 Hpt domain VF_0939 PF01933 Uncharacterised protein family UPF0052 VF_0940 PF04055 Radical SAM superfamily VF_0940 PF06463 Molybdenum Cofactor Synthesis C VF_0940 PF13353 4Fe-4S single cluster domain VF_0941 PF01967 MoaC family VF_0942 PF02597 ThiS family VF_0943 PF02391 MoaE protein VF_0944 PF14397 VF_0944 VF_0945 PF14400 VF_0945 VF_0945 PF14402 VF_0945 VF_0946 PF05618 Putative ATP-dependant zinc protease VF_0947 PF08003 Protein of unknown function (DUF1698) VF_0948 PF13649 Methyltransferase domain VF_0949 PF00152 tRNA synthetases class II (D, K and N) VF_0949 PF01336 OB-fold nucleic acid binding domain VF_0949 PF02938 GAD domain VF_0950 PF02075 Crossover junction endodeoxyribonuclease RuvC VF_0951 PF01330 RuvA N terminal domain VF_0951 PF07499 RuvA, C-terminal domain VF_0951 PF14520 Helix-hairpin-helix domain VF_0952 PF05491 Holliday junction DNA helicase ruvB C-terminus VF_0952 PF05496 Holliday junction DNA helicase ruvB N-terminus VF_0953 PF01654 VF_0953 VF_0954 PF02322 VF_0954 VF_0955 PF08173 VF_0955 VF_0956 PF09600 VF_0956 VF_0957 PF03061 Thioesterase superfamily VF_0958 PF01618 VF_0958 VF_0959 PF02472 Biopolymer transport protein ExbD/TolR VF_0960 PF06519 TolA C-terminal VF_0962 PF04052 TolB amino-terminal domain VF_0962 PF07676 WD40-like Beta Propeller Repeat VF_0963 PF00691 OmpA family VF_0964 PF13174 Tetratricopeptide repeat VF_0964 PF13432 Tetratricopeptide repeat VF_0964 PF16331 VF_0964 VF_0965 PF02445 Quinolinate synthetase A protein VF_0966 PF03695 Uncharacterised protein family (UPF0149) VF_0967 PF06610 VF_0967 VF_0968 PF00144 Beta-lactamase VF_0969 PF04134 VF_0969 VF_0970 PF00106 short chain dehydrogenase VF_0971 PF01926 50S ribosome-binding GTPase VF_0971 PF13167 VF_0971 VF_0971 PF16360 VF_0971 VF_0972 PF04542 Sigma-70 region 2 VF_0972 PF08281 Sigma-70, region 4 VF_0973 PF04262 Glutamate-cysteine ligase VF_0974 PF00005 ABC transporter VF_0974 PF00664 ABC transporter transmembrane region VF_0975 PF00005 ABC transporter VF_0975 PF00664 ABC transporter transmembrane region VF_0976 PF03199 Eukaryotic glutathione synthase VF_0976 PF03917 Eukaryotic glutathione synthase, ATP binding domain VF_0977 PF13673 Acetyltransferase (GNAT) domain VF_0978 PF08240 Alcohol dehydrogenase GroES-like domain VF_0978 PF13602 Zinc-binding dehydrogenase VF_0980 PF07690 Major Facilitator Superfamily VF_0982 PF00892 EamA-like transporter family VF_0983 PF03891 VF_0983 VF_0984 PF00031 Cystatin domain VF_0985 PF00563 EAL domain VF_0985 PF00990 GGDEF domain VF_0985 PF08269 Cache domain VF_0986 PF00704 Glycosyl hydrolases family 18 VF_0986 PF02839 Carbohydrate binding domain VF_0986 PF06483 VF_0986 VF_0986 PF14600 Cellulose-binding domain VF_0987 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_0988 PF04338 Protein of unknown function, DUF481 VF_0989 PF00990 GGDEF domain VF_0989 PF02743 Cache domain VF_0989 PF13426 PAS domain VF_0990 PF00069 Protein kinase domain VF_0991 PF13672 Protein phosphatase 2C VF_0993 PF06744 VF_0993 VF_0993 PF06761 VF_0993 VF_0993 PF14331 VF_0993 VF_0994 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) VF_0995 PF05936 VF_0995 VF_0996 PF12790 Type VI secretion lipoprotein VF_0997 PF00498 FHA domain VF_0998 PF00158 Sigma-54 interaction domain VF_0998 PF02954 Bacterial regulatory protein, Fis family VF_0999 PF00004 ATPase family associated with various cellular activities (AAA) VF_0999 PF07724 AAA domain (Cdc48 subfamily) VF_0999 PF10431 C-terminal, D2-small domain, of ClpB protein VF_1000 PF06996 VF_1000 VF_1001 PF05947 VF_1001 VF_1002 PF04965 Gene 25-like lysozyme VF_1003 PF05943 VF_1003 VF_1004 PF05591 VF_1004 VF_1005 PF06812 VF_1005 VF_1005 PF16989 VF_1005 VF_1006 PF10689 VF_1006 VF_1007 PF07445 Primosomal replication protein priB and priC VF_1008 PF01925 VF_1008 VF_1009 PF00270 DEAD/DEAH box helicase VF_1009 PF06733 DEAD_2 VF_1009 PF13307 Helicase C-terminal domain VF_1010 PF13609 Gram-negative porin VF_1011 PF13609 Gram-negative porin VF_1012 PF01634 ATP phosphoribosyltransferase VF_1012 PF08029 HisG, C-terminal domain VF_1013 PF00815 Histidinol dehydrogenase VF_1014 PF00155 Aminotransferase class I and II VF_1015 PF00475 Imidazoleglycerol-phosphate dehydratase VF_1015 PF08645 Polynucleotide kinase 3 phosphatase VF_1016 PF00117 Glutamine amidotransferase class-I VF_1017 PF00977 Histidine biosynthesis protein VF_1018 PF00977 Histidine biosynthesis protein VF_1019 PF01502 Phosphoribosyl-AMP cyclohydrolase VF_1019 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VF_1020 PF00849 RNA pseudouridylate synthase VF_1021 PF10672 S-adenosylmethionine-dependent methyltransferase VF_1022 PF16549 VF_1022 VF_1023 PF03795 YCII-related domain VF_1024 PF03061 Thioesterase superfamily VF_1025 PF04279 VF_1025 VF_1026 PF00375 Sodium:dicarboxylate symporter family VF_1027 PF00290 Tryptophan synthase alpha chain VF_1028 PF00291 Pyridoxal-phosphate dependent enzyme VF_1029 PF00218 Indole-3-glycerol phosphate synthase VF_1029 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VF_1031 PF00591 Glycosyl transferase family, a/b domain VF_1031 PF02885 Glycosyl transferase family, helical bundle domain VF_1032 PF00117 Glutamine amidotransferase class-I VF_1033 PF00425 chorismate binding enzyme VF_1034 PF02811 PHP domain VF_1035 PF01300 Telomere recombination VF_1036 PF00072 Response regulator receiver domain VF_1036 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1038 PF00849 RNA pseudouridylate synthase VF_1038 PF01479 S4 domain VF_1039 PF00106 short chain dehydrogenase VF_1040 PF01343 Peptidase family S49 VF_1040 PF08496 VF_1040 VF_1044 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) VF_1049 PF01555 DNA methylase VF_1050 PF10692 Protein of unknown function (DUF2498) VF_1051 PF01131 DNA topoisomerase VF_1051 PF01396 VF_1051 VF_1051 PF01751 Toprim domain VF_1051 PF08272 Topoisomerase I zinc-ribbon-like VF_1052 PF00939 Sodium:sulfate symporter transmembrane region VF_1053 PF00027 Cyclic nucleotide-binding domain VF_1053 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1054 PF00072 Response regulator receiver domain VF_1055 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VF_1055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VF_1056 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VF_1056 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VF_1056 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VF_1056 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VF_1057 PF01810 VF_1057 VF_1058 PF01557 Fumarylacetoacetate (FAA) hydrolase family VF_1059 PF00182 Chitinase class I VF_1059 PF02839 Carbohydrate binding domain VF_1060 PF01546 Peptidase family M20/M25/M40 VF_1061 PF03606 VF_1061 VF_1062 PF00709 Adenylosuccinate synthetase VF_1063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1063 PF03466 LysR substrate binding domain VF_1064 PF00282 Pyridoxal-dependent decarboxylase conserved domain VF_1065 PF06826 VF_1065 VF_1066 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1066 PF03466 LysR substrate binding domain VF_1067 PF07681 VF_1067 VF_1068 PF02678 Pirin VF_1068 PF05726 Pirin C-terminal cupin domain VF_1070 PF06742 Protein of unknown function (DUF1214) VF_1070 PF06863 Protein of unknown function (DUF1254) VF_1071 PF06742 Protein of unknown function (DUF1214) VF_1071 PF06863 Protein of unknown function (DUF1254) VF_1072 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1072 PF03466 LysR substrate binding domain VF_1073 PF11059 VF_1073 VF_1074 PF02311 AraC-like ligand binding domain VF_1074 PF12833 Helix-turn-helix domain VF_1075 PF01810 VF_1075 VF_1076 PF00174 Oxidoreductase molybdopterin binding domain VF_1077 PF03781 Sulfatase-modifying factor enzyme 1 VF_1078 PF09391 Protein of unknown function (DUF2000) VF_1080 PF09900 VF_1080 VF_1081 PF00440 Bacterial regulatory proteins, tetR family VF_1081 PF16925 VF_1081 VF_1082 PF02798 Glutathione S-transferase, N-terminal domain VF_1082 PF13410 Glutathione S-transferase, C-terminal domain VF_1083 PF00043 Glutathione S-transferase, C-terminal domain VF_1083 PF02798 Glutathione S-transferase, N-terminal domain VF_1084 PF05525 VF_1084 VF_1085 PF13505 Outer membrane protein beta-barrel domain VF_1086 PF00486 Transcriptional regulatory protein, C terminal VF_1088 PF03605 VF_1088 VF_1089 PF16868 VF_1089 VF_1090 PF06808 VF_1090 VF_1091 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1092 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1092 PF08376 Nitrate and nitrite sensing VF_1093 PF00060 Ligand-gated ion channel VF_1093 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_1094 PF08241 Methyltransferase domain VF_1095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1095 PF03466 LysR substrate binding domain VF_1096 PF01773 Na+ dependent nucleoside transporter N-terminus VF_1096 PF07662 Na+ dependent nucleoside transporter C-terminus VF_1096 PF07670 Nucleoside recognition VF_1097 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VF_1098 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VF_1099 PF13354 Beta-lactamase enzyme family VF_1101 PF01844 HNH endonuclease VF_1103 PF04191 Phospholipid methyltransferase VF_1104 PF17131 VF_1104 VF_1105 PF02687 VF_1105 VF_1105 PF12704 MacB-like periplasmic core domain VF_1106 PF02687 VF_1106 VF_1106 PF12704 MacB-like periplasmic core domain VF_1107 PF00005 ABC transporter VF_1108 PF00226 DnaJ domain VF_1108 PF01556 DnaJ C terminal domain VF_1110 PF11391 VF_1110 VF_1111 PF03466 LysR substrate binding domain VF_1112 PF12710 haloacid dehalogenase-like hydrolase VF_1113 PF01380 SIS domain VF_1113 PF01418 Helix-turn-helix domain, rpiR family VF_1114 PF13580 SIS domain VF_1115 PF00367 phosphotransferase system, EIIB VF_1115 PF02378 Phosphotransferase system, EIIC VF_1116 PF00486 Transcriptional regulatory protein, C terminal VF_1117 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1117 PF02743 Cache domain VF_1118 PF07152 YaeQ protein VF_1119 PF01925 VF_1119 VF_1120 PF13527 Acetyltransferase (GNAT) domain VF_1121 PF02028 BCCT family transporter VF_1122 PF00326 Prolyl oligopeptidase family VF_1122 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VF_1124 PF00854 POT family VF_1128 PF13304 AAA domain VF_1128 PF13476 AAA domain VF_1129 PF02958 Ecdysteroid kinase VF_1130 PF00588 SpoU rRNA Methylase family VF_1131 PF01936 NYN domain VF_1132 PF00128 Alpha amylase, catalytic domain VF_1133 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1133 PF00672 HAMP domain VF_1134 PF01230 HIT domain VF_1136 PF07233 Protein of unknown function (DUF1425) VF_1137 PF13036 Protein of unknown function (DUF3897) VF_1138 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1138 PF02743 Cache domain VF_1139 PF04320 VF_1139 VF_1140 PF13649 Methyltransferase domain VF_1141 PF01636 Phosphotransferase enzyme family VF_1142 PF05728 Uncharacterised protein family (UPF0227) VF_1143 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_1144 PF00270 DEAD/DEAH box helicase VF_1144 PF00271 Helicase conserved C-terminal domain VF_1146 PF14600 Cellulose-binding domain VF_1147 PF02554 VF_1147 VF_1147 PF13722 VF_1147 VF_1148 PF00072 Response regulator receiver domain VF_1148 PF04397 LytTr DNA-binding domain VF_1149 PF06580 VF_1149 VF_1149 PF07694 5TMR of 5TMR-LYT VF_1149 PF15714 VF_1149 VF_1150 PF01184 VF_1150 VF_1152 PF01435 Peptidase family M48 VF_1153 PF07308 VF_1153 VF_1155 PF00375 Sodium:dicarboxylate symporter family VF_1156 PF01979 Amidohydrolase family VF_1157 PF01471 Putative peptidoglycan binding domain VF_1157 PF03734 L,D-transpeptidase catalytic domain VF_1158 PF05951 VF_1158 VF_1159 PF00152 tRNA synthetases class II (D, K and N) VF_1159 PF01336 OB-fold nucleic acid binding domain VF_1160 PF01242 6-pyruvoyl tetrahydropterin synthase VF_1161 PF16576 VF_1161 VF_1162 PF02321 Outer membrane efflux protein VF_1163 PF02687 VF_1163 VF_1163 PF12704 MacB-like periplasmic core domain VF_1164 PF02687 VF_1164 VF_1164 PF12704 MacB-like periplasmic core domain VF_1165 PF00005 ABC transporter VF_1166 PF03372 Endonuclease/Exonuclease/phosphatase family VF_1167 PF00149 Calcineurin-like phosphoesterase VF_1167 PF12320 Type 5 capsule protein repressor C-terminal domain VF_1168 PF13476 AAA domain VF_1168 PF13558 Putative exonuclease SbcCD, C subunit VF_1169 PF03061 Thioesterase superfamily VF_1170 PF09391 Protein of unknown function (DUF2000) VF_1171 PF03222 Tryptophan/tyrosine permease family VF_1172 PF03222 Tryptophan/tyrosine permease family VF_1173 PF10973 VF_1173 VF_1174 PF10973 VF_1174 VF_1176 PF03313 VF_1176 VF_1176 PF03315 Serine dehydratase beta chain VF_1177 PF03222 Tryptophan/tyrosine permease family VF_1178 PF00293 NUDIX domain VF_1179 PF00425 chorismate binding enzyme VF_1179 PF04715 Anthranilate synthase component I, N terminal region VF_1180 PF05681 VF_1180 VF_1180 PF05683 Fumarase C-terminus VF_1181 PF10973 VF_1181 VF_1182 PF16576 VF_1182 VF_1183 PF16576 VF_1183 VF_1184 PF00873 AcrB/AcrD/AcrF family VF_1185 PF11042 VF_1185 VF_1186 PF01053 Cys/Met metabolism PLP-dependent enzyme VF_1188 PF00465 Iron-containing alcohol dehydrogenase VF_1189 PF00925 GTP cyclohydrolase II VF_1190 PF09375 Imelysin VF_1191 PF06537 VF_1191 VF_1192 PF09375 Imelysin VF_1193 PF07433 VF_1193 VF_1194 PF00753 Metallo-beta-lactamase superfamily VF_1196 PF13084 VF_1196 VF_1197 PF03222 Tryptophan/tyrosine permease family VF_1198 PF00994 Probable molybdopterin binding domain VF_1199 PF00111 2Fe-2S iron-sulfur cluster binding domain VF_1200 PF00990 GGDEF domain VF_1201 PF00268 Ribonucleotide reductase, small chain VF_1202 PF00317 Ribonucleotide reductase, all-alpha domain VF_1202 PF02867 Ribonucleotide reductase, barrel domain VF_1202 PF03477 ATP cone domain VF_1203 PF13489 Methyltransferase domain VF_1204 PF00521 DNA gyrase/topoisomerase IV, subunit A VF_1204 PF03989 DNA gyrase C-terminal domain, beta-propeller VF_1205 PF12119 VF_1205 VF_1206 PF01569 PAP2 superfamily VF_1207 PF00012 Hsp70 protein VF_1208 PF04266 ASCH domain VF_1210 PF07070 VF_1210 VF_1211 PF03992 Antibiotic biosynthesis monooxygenase VF_1212 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VF_1213 PF13467 Ribbon-helix-helix domain VF_1214 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VF_1214 PF02824 TGS domain VF_1214 PF03129 Anticodon binding domain VF_1214 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VF_1216 PF00707 Translation initiation factor IF-3, C-terminal domain VF_1216 PF05198 Translation initiation factor IF-3, N-terminal domain VF_1217 PF01632 Ribosomal protein L35 VF_1218 PF00453 Ribosomal protein L20 VF_1219 PF01794 VF_1219 VF_1219 PF08022 VF_1219 VF_1220 PF00005 ABC transporter VF_1221 PF01032 FecCD transport family VF_1222 PF01497 Periplasmic binding protein VF_1223 PF02472 Biopolymer transport protein ExbD/TolR VF_1224 PF01618 VF_1224 VF_1225 PF03544 Gram-negative bacterial TonB protein C-terminal VF_1226 PF04055 Radical SAM superfamily VF_1227 PF06228 Haem utilisation ChuX/HutX VF_1228 PF01243 Pyridoxamine 5'-phosphate oxidase VF_1229 PF05954 Phage late control gene D protein (GPD) VF_1230 PF13503 VF_1230 VF_1234 PF00593 TonB dependent receptor VF_1234 PF07715 TonB-dependent Receptor Plug Domain VF_1235 PF01409 tRNA synthetases class II core domain (F) VF_1235 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VF_1236 PF01588 Putative tRNA binding domain VF_1236 PF03147 Ferredoxin-fold anticodon binding domain VF_1236 PF03483 B3/4 domain VF_1236 PF03484 tRNA synthetase B5 domain VF_1237 PF00216 Bacterial DNA-binding protein VF_1238 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VF_1239 PF01432 Peptidase family M3 VF_1239 PF08439 Oligopeptidase F VF_1240 PF04461 Protein of unknown function (DUF520) VF_1241 PF00793 DAHP synthetase I family VF_1242 PF02896 PEP-utilising enzyme, TIM barrel domain VF_1244 PF13509 S1 domain VF_1245 PF00990 GGDEF domain VF_1245 PF08269 Cache domain VF_1246 PF01278 Omptin family VF_1247 PF01476 LysM domain VF_1249 PF13714 Phosphoenolpyruvate phosphomutase VF_1250 PF03606 VF_1250 VF_1252 PF02615 Malate/L-lactate dehydrogenase VF_1253 PF00155 Aminotransferase class I and II VF_1254 PF03553 VF_1254 VF_1255 PF00356 Bacterial regulatory proteins, lacI family VF_1255 PF13377 Periplasmic binding protein-like domain VF_1256 PF02112 VF_1256 VF_1258 PF03061 Thioesterase superfamily VF_1259 PF04224 VF_1259 VF_1260 PF00440 Bacterial regulatory proteins, tetR family VF_1261 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VF_1262 PF00462 Glutaredoxin VF_1263 PF09335 VF_1263 VF_1264 PF01979 Amidohydrolase family VF_1266 PF01554 MatE VF_1269 PF00717 Peptidase S24-like VF_1270 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_1271 PF01925 VF_1271 VF_1272 PF01132 Elongation factor P (EF-P) OB domain VF_1272 PF08207 Elongation factor P (EF-P) KOW-like domain VF_1272 PF09285 Elongation factor P, C-terminal VF_1273 PF06738 VF_1273 VF_1273 PF12821 VF_1273 VF_1274 PF01189 NOL1/NOP2/sun family VF_1274 PF13636 pre-rRNA processing and ribosome biogenesis VF_1274 PF17125 VF_1274 VF_1275 PF02470 VF_1275 VF_1276 PF04403 VF_1276 VF_1277 PF00005 ABC transporter VF_1277 PF00664 ABC transporter transmembrane region VF_1278 PF13185 GAF domain VF_1279 PF04352 ProQ/FINO family VF_1280 PF00595 PDZ domain (Also known as DHR or GLGF) VF_1280 PF03572 Peptidase family S41 VF_1280 PF08180 VF_1280 VF_1280 PF11818 VF_1280 VF_1282 PF01433 Peptidase family M1 VF_1282 PF11940 Domain of unknown function (DUF3458) VF_1283 PF11197 VF_1283 VF_1284 PF05088 VF_1284 VF_1285 PF01180 Dihydroorotate dehydrogenase VF_1286 PF07126 VF_1286 VF_1287 PF01170 Putative RNA methylase family UPF0020 VF_1287 PF02926 THUMP domain VF_1287 PF10672 S-adenosylmethionine-dependent methyltransferase VF_1288 PF05768 Glutaredoxin-like domain (DUF836) VF_1289 PF00005 ABC transporter VF_1289 PF12848 ABC transporter VF_1289 PF16326 VF_1289 VF_1290 PF11949 VF_1290 VF_1291 PF04957 Ribosome modulation factor VF_1292 PF07977 FabA-like domain VF_1293 PF05362 Lon protease (S16) C-terminal proteolytic domain VF_1293 PF13654 AAA domain VF_1294 PF06303 Organiser of macrodomain of Terminus of chromosome VF_1295 PF07273 Protein of unknown function (DUF1439) VF_1296 PF00072 Response regulator receiver domain VF_1296 PF00512 His Kinase A (phospho-acceptor) domain VF_1296 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1297 PF08495 VF_1297 VF_1297 PF10442 VF_1297 VF_1299 PF00115 Cytochrome C and Quinol oxidase polypeptide I VF_1300 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO VF_1301 PF05545 VF_1301 VF_1302 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VF_1302 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VF_1303 PF05751 VF_1303 VF_1304 PF00122 E1-E2 ATPase VF_1304 PF00403 Heavy-metal-associated domain VF_1304 PF00702 haloacid dehalogenase-like hydrolase VF_1304 PF12156 VF_1304 VF_1306 PF03597 VF_1306 VF_1307 PF13386 VF_1307 VF_1308 PF00027 Cyclic nucleotide-binding domain VF_1308 PF13545 Crp-like helix-turn-helix domain VF_1310 PF00582 Universal stress protein family VF_1311 PF01171 PP-loop family VF_1312 PF11205 VF_1312 VF_1313 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VF_1315 PF00005 ABC transporter VF_1315 PF08402 TOBE domain VF_1316 PF00528 Binding-protein-dependent transport system inner membrane component VF_1317 PF00528 Binding-protein-dependent transport system inner membrane component VF_1318 PF13416 Bacterial extracellular solute-binding protein VF_1319 PF13416 Bacterial extracellular solute-binding protein VF_1320 PF02146 Sir2 family VF_1321 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1321 PF03466 LysR substrate binding domain VF_1322 PF01773 Na+ dependent nucleoside transporter N-terminus VF_1322 PF07662 Na+ dependent nucleoside transporter C-terminus VF_1322 PF07670 Nucleoside recognition VF_1323 PF03992 Antibiotic biosynthesis monooxygenase VF_1324 PF00805 Pentapeptide repeats (8 copies) VF_1324 PF13599 Pentapeptide repeats (9 copies) VF_1326 PF00132 Bacterial transferase hexapeptide (six repeats) VF_1327 PF05232 VF_1327 VF_1328 PF13302 Acetyltransferase (GNAT) domain VF_1329 PF01464 Transglycosylase SLT domain VF_1329 PF14718 Soluble lytic murein transglycosylase L domain VF_1330 PF01522 Polysaccharide deacetylase VF_1330 PF02839 Carbohydrate binding domain VF_1332 PF01554 MatE VF_1333 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1333 PF03466 LysR substrate binding domain VF_1334 PF04439 Streptomycin adenylyltransferase VF_1335 PF01966 HD domain VF_1337 PF00132 Bacterial transferase hexapeptide (six repeats) VF_1337 PF12464 Maltose acetyltransferase VF_1338 PF01810 VF_1338 VF_1341 PF04794 YdjC-like protein VF_1342 PF07883 Cupin domain VF_1344 PF13673 Acetyltransferase (GNAT) domain VF_1345 PF13302 Acetyltransferase (GNAT) domain VF_1347 PF03831 PhnA protein VF_1347 PF08274 PhnA Zinc-Ribbon VF_1349 PF00082 Subtilase family VF_1349 PF05922 Peptidase inhibitor I9 VF_1350 PF00990 GGDEF domain VF_1351 PF06249 Ethanolamine utilisation protein EutQ VF_1352 PF00293 NUDIX domain VF_1353 PF15731 VF_1353 VF_1354 PF04326 Divergent AAA domain VF_1354 PF13749 ATP-dependent DNA helicase recG C-terminal VF_1356 PF11185 VF_1356 VF_1358 PF01292 Prokaryotic cytochrome b561 VF_1359 PF13247 4Fe-4S dicluster domain VF_1360 PF00384 Molybdopterin oxidoreductase VF_1360 PF01568 Molydopterin dinucleotide binding domain VF_1360 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VF_1361 PF10518 TAT (twin-arginine translocation) pathway signal sequence VF_1362 PF02613 Nitrate reductase delta subunit VF_1363 PF12838 4Fe-4S dicluster domain VF_1363 PF13187 4Fe-4S dicluster domain VF_1364 PF11748 VF_1364 VF_1365 PF11749 VF_1365 VF_1366 PF02634 FdhD/NarQ family VF_1367 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_1367 PF01966 HD domain VF_1368 PF01464 Transglycosylase SLT domain VF_1368 PF11873 Domain of unknown function (DUF3393) VF_1369 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1369 PF00672 HAMP domain VF_1369 PF02743 Cache domain VF_1370 PF01470 Pyroglutamyl peptidase VF_1371 PF06166 VF_1371 VF_1372 PF06149 VF_1372 VF_1373 PF01566 VF_1373 VF_1374 PF02626 Allophanate hydrolase subunit 2 VF_1375 PF02682 Allophanate hydrolase subunit 1 VF_1376 PF03746 LamB/YcsF family VF_1377 PF07286 Protein of unknown function (DUF1445) VF_1378 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1378 PF03466 LysR substrate binding domain VF_1379 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase VF_1380 PF00144 Beta-lactamase VF_1382 PF13302 Acetyltransferase (GNAT) domain VF_1383 PF01136 VF_1383 VF_1383 PF12392 VF_1383 VF_1384 PF13410 Glutathione S-transferase, C-terminal domain VF_1384 PF13417 Glutathione S-transferase, N-terminal domain VF_1385 PF13673 Acetyltransferase (GNAT) domain VF_1386 PF13673 Acetyltransferase (GNAT) domain VF_1387 PF00581 Rhodanese-like domain VF_1388 PF13460 NADH(P)-binding VF_1389 PF00583 Acetyltransferase (GNAT) family VF_1390 PF00182 Chitinase class I VF_1390 PF02839 Carbohydrate binding domain VF_1394 PF02028 BCCT family transporter VF_1396 PF00072 Response regulator receiver domain VF_1396 PF00486 Transcriptional regulatory protein, C terminal VF_1397 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1398 PF09335 VF_1398 VF_1398 PF14067 VF_1398 VF_1399 PF00535 Glycosyl transferase family 2 VF_1400 PF00512 His Kinase A (phospho-acceptor) domain VF_1400 PF00672 HAMP domain VF_1400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1400 PF17202 VF_1400 VF_1401 PF00072 Response regulator receiver domain VF_1401 PF00158 Sigma-54 interaction domain VF_1401 PF02954 Bacterial regulatory protein, Fis family VF_1402 PF12849 PBP superfamily domain VF_1403 PF00528 Binding-protein-dependent transport system inner membrane component VF_1404 PF00005 ABC transporter VF_1405 PF12804 MobA-like NTP transferase domain VF_1406 PF00994 Probable molybdopterin binding domain VF_1406 PF03205 Molybdopterin guanine dinucleotide synthesis protein B VF_1406 PF03453 MoeA N-terminal region (domain I and II) VF_1406 PF03454 MoeA C-terminal region (domain IV) VF_1407 PF02810 SEC-C motif VF_1408 PF00480 ROK family VF_1409 PF03942 VF_1409 VF_1410 PF03806 VF_1410 VF_1411 PF00877 NlpC/P60 family VF_1412 PF12290 VF_1412 VF_1413 PF03881 Fructosamine kinase VF_1414 PF00677 Lumazine binding domain VF_1415 PF01554 MatE VF_1417 PF04055 Radical SAM superfamily VF_1417 PF13186 Iron-sulfur cluster-binding domain VF_1418 PF03781 Sulfatase-modifying factor enzyme 1 VF_1419 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1419 PF03466 LysR substrate binding domain VF_1420 PF13584 VF_1420 VF_1421 PF13519 von Willebrand factor type A domain VF_1422 PF00092 von Willebrand factor type A domain VF_1423 PF14316 VF_1423 VF_1424 PF01882 VF_1424 VF_1425 PF07726 ATPase family associated with various cellular activities (AAA) VF_1426 PF13181 Tetratricopeptide repeat VF_1426 PF13435 Cytochrome c554 and c-prime VF_1427 PF00884 Sulfatase VF_1427 PF14707 C-terminal region of aryl-sulfatase VF_1428 PF00884 Sulfatase VF_1428 PF14707 C-terminal region of aryl-sulfatase VF_1430 PF00884 Sulfatase VF_1430 PF14707 C-terminal region of aryl-sulfatase VF_1432 PF02001 VF_1432 VF_1433 PF02579 Dinitrogenase iron-molybdenum cofactor VF_1434 PF04400 VF_1434 VF_1435 PF13698 VF_1435 VF_1436 PF03733 VF_1436 VF_1437 PF13505 Outer membrane protein beta-barrel domain VF_1439 PF00270 DEAD/DEAH box helicase VF_1439 PF00271 Helicase conserved C-terminal domain VF_1442 PF01910 Domain of unknown function DUF77 VF_1443 PF01381 Helix-turn-helix VF_1444 PF05025 RbsD / FucU transport protein family VF_1445 PF00005 ABC transporter VF_1446 PF02653 VF_1446 VF_1447 PF13407 Periplasmic binding protein domain VF_1448 PF00294 pfkB family carbohydrate kinase VF_1449 PF00356 Bacterial regulatory proteins, lacI family VF_1449 PF13377 Periplasmic binding protein-like domain VF_1450 PF01068 ATP dependent DNA ligase domain VF_1450 PF14743 DNA ligase OB-like domain VF_1451 PF00932 Lamin Tail Domain VF_1452 PF01554 MatE VF_1454 PF01235 VF_1454 VF_1455 PF00924 Mechanosensitive ion channel VF_1456 PF01810 VF_1456 VF_1457 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VF_1458 PF00291 Pyridoxal-phosphate dependent enzyme VF_1459 PF01042 Endoribonuclease L-PSP VF_1460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1460 PF03466 LysR substrate binding domain VF_1461 PF12532 VF_1461 VF_1464 PF00580 UvrD/REP helicase N-terminal domain VF_1465 PF00580 UvrD/REP helicase N-terminal domain VF_1465 PF01396 VF_1465 VF_1465 PF13361 UvrD-like helicase C-terminal domain VF_1466 PF00011 Hsp20/alpha crystallin family VF_1467 PF00012 Hsp70 protein VF_1469 PF01381 Helix-turn-helix VF_1470 PF07804 HipA-like C-terminal domain VF_1470 PF07805 HipA-like N-terminal domain VF_1470 PF13657 HipA N-terminal domain VF_1471 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VF_1472 PF10013 VF_1472 VF_1473 PF11280 VF_1473 VF_1474 PF08547 Complex I intermediate-associated protein 30 (CIA30) VF_1475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1475 PF03466 LysR substrate binding domain VF_1476 PF07969 Amidohydrolase family VF_1477 PF00226 DnaJ domain VF_1477 PF08238 Sel1 repeat VF_1479 PF00230 Major intrinsic protein VF_1480 PF04264 YceI-like domain VF_1481 PF00905 Penicillin binding protein transpeptidase domain VF_1481 PF03717 Penicillin-binding Protein dimerisation domain VF_1482 PF00929 Exonuclease VF_1482 PF08411 Exonuclease C-terminal VF_1483 PF03788 VF_1483 VF_1484 PF04172 VF_1484 VF_1485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VF_1485 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VF_1486 PF01425 Amidase VF_1487 PF01370 NAD dependent epimerase/dehydratase family VF_1487 PF02222 ATP-grasp domain VF_1488 PF00155 Aminotransferase class I and II VF_1489 PF13679 VF_1489 VF_1490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1490 PF03466 LysR substrate binding domain VF_1492 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VF_1495 PF03961 VF_1495 VF_1496 PF00462 Glutaredoxin VF_1497 PF11101 VF_1497 VF_1498 PF01259 SAICAR synthetase VF_1499 PF13505 Outer membrane protein beta-barrel domain VF_1500 PF00270 DEAD/DEAH box helicase VF_1500 PF00271 Helicase conserved C-terminal domain VF_1500 PF04408 Helicase associated domain (HA2) VF_1500 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VF_1500 PF11898 VF_1500 VF_1501 PF04358 DsrC like protein VF_1502 PF00708 Acylphosphatase VF_1503 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1504 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1505 PF10672 S-adenosylmethionine-dependent methyltransferase VF_1507 PF11042 VF_1507 VF_1508 PF03606 VF_1508 VF_1509 PF01979 Amidohydrolase family VF_1510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1510 PF03466 LysR substrate binding domain VF_1511 PF00149 Calcineurin-like phosphoesterase VF_1511 PF02872 5'-nucleotidase, C-terminal domain VF_1512 PF05724 Thiopurine S-methyltransferase (TPMT) VF_1513 PF00375 Sodium:dicarboxylate symporter family VF_1514 PF00929 Exonuclease VF_1515 PF00990 GGDEF domain VF_1515 PF03924 CHASE domain VF_1516 PF10816 VF_1516 VF_1517 PF00012 Hsp70 protein VF_1518 PF00012 Hsp70 protein VF_1518 PF12531 VF_1518 VF_1519 PF11163 VF_1519 VF_1520 PF09002 Domain of unknown function (DUF1887) VF_1521 PF01048 Phosphorylase superfamily VF_1522 PF00122 E1-E2 ATPase VF_1522 PF00403 Heavy-metal-associated domain VF_1522 PF00702 haloacid dehalogenase-like hydrolase VF_1523 PF00571 CBS domain VF_1525 PF01565 FAD binding domain VF_1525 PF02913 FAD linked oxidases, C-terminal domain VF_1525 PF13183 4Fe-4S dicluster domain VF_1526 PF11813 VF_1526 VF_1527 PF00710 Asparaginase VF_1528 PF10979 VF_1528 VF_1530 PF00392 Bacterial regulatory proteins, gntR family VF_1530 PF07702 UTRA domain VF_1531 PF10414 Sirohaem synthase dimerisation region VF_1531 PF13241 Putative NAD(P)-binding VF_1531 PF14824 Sirohaem biosynthesis protein central VF_1532 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_1533 PF00528 Binding-protein-dependent transport system inner membrane component VF_1534 PF00528 Binding-protein-dependent transport system inner membrane component VF_1535 PF00005 ABC transporter VF_1536 PF01027 Inhibitor of apoptosis-promoting Bax1 VF_1537 PF08238 Sel1 repeat VF_1538 PF13401 AAA domain VF_1539 PF00924 Mechanosensitive ion channel VF_1540 PF00515 Tetratricopeptide repeat VF_1540 PF08238 Sel1 repeat VF_1541 PF00293 NUDIX domain VF_1541 PF01569 PAP2 superfamily VF_1542 PF13673 Acetyltransferase (GNAT) domain VF_1543 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VF_1544 PF01569 PAP2 superfamily VF_1545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1545 PF03466 LysR substrate binding domain VF_1546 PF03605 VF_1546 VF_1547 PF01177 Asp/Glu/Hydantoin racemase VF_1548 PF03918 Cytochrome C biogenesis protein VF_1549 PF08534 Redoxin VF_1550 PF01578 VF_1550 VF_1550 PF16327 VF_1550 VF_1551 PF03916 VF_1551 VF_1552 PF13247 4Fe-4S dicluster domain VF_1553 PF13435 Cytochrome c554 and c-prime VF_1554 PF02335 Cytochrome c552 VF_1556 PF02253 Phospholipase A1 VF_1557 PF00270 DEAD/DEAH box helicase VF_1557 PF00271 Helicase conserved C-terminal domain VF_1557 PF04408 Helicase associated domain (HA2) VF_1558 PF00390 Malic enzyme, N-terminal domain VF_1558 PF03949 Malic enzyme, NAD binding domain VF_1559 PF11872 VF_1559 VF_1560 PF02698 DUF218 domain VF_1561 PF00990 GGDEF domain VF_1562 PF06629 VF_1562 VF_1564 PF02361 Cobalt transport protein VF_1565 PF00005 ABC transporter VF_1565 PF12558 VF_1565 VF_1566 PF07155 ECF-type riboflavin transporter, S component VF_1568 PF00849 RNA pseudouridylate synthase VF_1568 PF01479 S4 domain VF_1570 PF00072 Response regulator receiver domain VF_1570 PF00486 Transcriptional regulatory protein, C terminal VF_1571 PF02613 Nitrate reductase delta subunit VF_1572 PF00356 Bacterial regulatory proteins, lacI family VF_1572 PF13377 Periplasmic binding protein-like domain VF_1573 PF04993 TfoX N-terminal domain VF_1573 PF04994 TfoX C-terminal domain VF_1575 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VF_1576 PF09619 Type III secretion system lipoprotein chaperone (YscW) VF_1577 PF13622 Thioesterase-like superfamily VF_1578 PF01037 AsnC family VF_1578 PF13412 Winged helix-turn-helix DNA-binding VF_1579 PF00291 Pyridoxal-phosphate dependent enzyme VF_1580 PF06508 Queuosine biosynthesis protein QueC VF_1581 PF00873 AcrB/AcrD/AcrF family VF_1582 PF16576 VF_1582 VF_1583 PF03372 Endonuclease/Exonuclease/phosphatase family VF_1584 PF04399 Glutaredoxin 2, C terminal domain VF_1584 PF13417 Glutathione S-transferase, N-terminal domain VF_1585 PF00528 Binding-protein-dependent transport system inner membrane component VF_1586 PF00528 Binding-protein-dependent transport system inner membrane component VF_1587 PF00497 Bacterial extracellular solute-binding proteins, family 3 VF_1588 PF00005 ABC transporter VF_1589 PF11840 VF_1589 VF_1590 PF01228 Glycine radical VF_1590 PF02901 Pyruvate formate lyase VF_1591 PF04055 Radical SAM superfamily VF_1591 PF13353 4Fe-4S single cluster domain VF_1592 PF08007 Cupin superfamily protein VF_1593 PF00005 ABC transporter VF_1593 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_1594 PF00005 ABC transporter VF_1594 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_1595 PF00528 Binding-protein-dependent transport system inner membrane component VF_1595 PF12911 VF_1595 VF_1596 PF00528 Binding-protein-dependent transport system inner membrane component VF_1597 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_1598 PF00704 Glycosyl hydrolases family 18 VF_1598 PF02839 Carbohydrate binding domain VF_1598 PF08329 Chitinase A, N-terminal domain VF_1599 PF00265 Thymidine kinase VF_1600 PF01406 tRNA synthetases class I (C) catalytic domain VF_1600 PF09190 DALR domain VF_1601 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VF_1602 PF00149 Calcineurin-like phosphoesterase VF_1603 PF00563 EAL domain VF_1603 PF08668 HDOD domain VF_1605 PF00209 Sodium:neurotransmitter symporter family VF_1606 PF13091 PLD-like domain VF_1606 PF13396 VF_1606 VF_1607 PF01227 GTP cyclohydrolase I VF_1608 PF00994 Probable molybdopterin binding domain VF_1608 PF03453 MoeA N-terminal region (domain I and II) VF_1608 PF03454 MoeA C-terminal region (domain IV) VF_1609 PF00899 ThiF family VF_1610 PF12849 PBP superfamily domain VF_1611 PF00528 Binding-protein-dependent transport system inner membrane component VF_1612 PF00528 Binding-protein-dependent transport system inner membrane component VF_1613 PF00005 ABC transporter VF_1615 PF13505 Outer membrane protein beta-barrel domain VF_1616 PF09829 VF_1616 VF_1618 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1618 PF00672 HAMP domain VF_1619 PF00072 Response regulator receiver domain VF_1619 PF00512 His Kinase A (phospho-acceptor) domain VF_1619 PF00672 HAMP domain VF_1619 PF01627 Hpt domain VF_1619 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1620 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VF_1621 PF02142 MGS-like domain VF_1622 PF00580 UvrD/REP helicase N-terminal domain VF_1622 PF12462 VF_1622 VF_1622 PF13361 UvrD-like helicase C-terminal domain VF_1623 PF12805 VF_1623 VF_1623 PF13515 VF_1623 VF_1624 PF13740 ACT domain VF_1625 PF01066 CDP-alcohol phosphatidyltransferase VF_1626 PF01541 GIY-YIG catalytic domain VF_1626 PF02151 UvrB/uvrC motif VF_1626 PF08459 UvrC Helix-hairpin-helix N-terminal VF_1626 PF14520 Helix-hairpin-helix domain VF_1627 PF00072 Response regulator receiver domain VF_1627 PF00196 Bacterial regulatory proteins, luxR family VF_1628 PF00136 DNA polymerase family B VF_1628 PF03104 DNA polymerase family B, exonuclease domain VF_1630 PF03553 VF_1630 VF_1631 PF00816 H-NS histone family VF_1632 PF06629 VF_1632 VF_1633 PF00392 Bacterial regulatory proteins, gntR family VF_1633 PF07840 FadR C-terminal domain VF_1634 PF06450 VF_1634 VF_1635 PF02600 Disulfide bond formation protein DsbB VF_1636 PF02810 SEC-C motif VF_1636 PF03695 Uncharacterised protein family (UPF0149) VF_1637 PF13633 Prokaryotic N-terminal methylation site VF_1638 PF01207 Dihydrouridine synthase (Dus) VF_1639 PF00990 GGDEF domain VF_1641 PF01131 DNA topoisomerase VF_1641 PF01751 Toprim domain VF_1642 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VF_1642 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_1643 PF01343 Peptidase family S49 VF_1644 PF00710 Asparaginase VF_1645 PF01118 Semialdehyde dehydrogenase, NAD binding domain VF_1645 PF02774 Semialdehyde dehydrogenase, dimerisation domain VF_1646 PF03553 VF_1646 VF_1648 PF04245 VF_1648 VF_1649 PF07208 Protein of unknown function (DUF1414) VF_1650 PF00884 Sulfatase VF_1650 PF11893 VF_1650 VF_1651 PF00194 Eukaryotic-type carbonic anhydrase VF_1652 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1652 PF02743 Cache domain VF_1653 PF01048 Phosphorylase superfamily VF_1654 PF00583 Acetyltransferase (GNAT) family VF_1655 PF13401 AAA domain VF_1656 PF00924 Mechanosensitive ion channel VF_1657 PF03171 2OG-Fe(II) oxygenase superfamily VF_1657 PF14226 non-haem dioxygenase in morphine synthesis N-terminal VF_1658 PF00106 short chain dehydrogenase VF_1660 PF03692 VF_1660 VF_1661 PF03692 VF_1661 VF_1662 PF06146 VF_1662 VF_1663 PF04280 Tim44-like domain VF_1664 PF13305 WHG domain VF_1665 PF01553 Acyltransferase VF_1665 PF07690 Major Facilitator Superfamily VF_1666 PF00501 AMP-binding enzyme VF_1666 PF13193 AMP-binding enzyme C-terminal domain VF_1667 PF13378 Enolase C-terminal domain-like VF_1669 PF00378 Enoyl-CoA hydratase/isomerase family VF_1670 PF12697 Alpha/beta hydrolase family VF_1671 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VF_1671 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VF_1671 PF16582 VF_1671 VF_1672 PF00425 chorismate binding enzyme VF_1673 PF00155 Aminotransferase class I and II VF_1674 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_1674 PF12793 VF_1674 VF_1675 PF01872 RibD C-terminal domain VF_1676 PF00440 Bacterial regulatory proteins, tetR family VF_1677 PF06719 VF_1677 VF_1677 PF12833 Helix-turn-helix domain VF_1678 PF00465 Iron-containing alcohol dehydrogenase VF_1680 PF00892 EamA-like transporter family VF_1681 PF00171 Aldehyde dehydrogenase family VF_1682 PF01966 HD domain VF_1682 PF13286 Phosphohydrolase-associated domain VF_1683 PF03942 VF_1683 VF_1684 PF01694 Rhomboid family VF_1685 PF02132 RecR protein VF_1685 PF13662 Toprim domain VF_1686 PF02575 YbaB/EbfC DNA-binding family VF_1687 PF12168 VF_1687 VF_1687 PF12169 DNA polymerase III subunits gamma and tau domain III VF_1687 PF12170 DNA polymerase III tau subunit V interacting with alpha VF_1687 PF13177 DNA polymerase III, delta subunit VF_1688 PF00156 Phosphoribosyl transferase domain VF_1689 PF00072 Response regulator receiver domain VF_1690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1690 PF03466 LysR substrate binding domain VF_1691 PF13522 Glutamine amidotransferase domain VF_1692 PF02674 VF_1692 VF_1693 PF05036 Sporulation related domain VF_1694 PF02875 Mur ligase family, glutamate ligase domain VF_1694 PF08245 Mur ligase middle domain VF_1695 PF01039 Carboxyl transferase domain VF_1696 PF01416 tRNA pseudouridine synthase VF_1698 PF01118 Semialdehyde dehydrogenase, NAD binding domain VF_1698 PF02774 Semialdehyde dehydrogenase, dimerisation domain VF_1699 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VF_1699 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VF_1699 PF11890 Domain of unknown function (DUF3410) VF_1700 PF00109 Beta-ketoacyl synthase, N-terminal domain VF_1700 PF02801 Beta-ketoacyl synthase, C-terminal domain VF_1701 PF01266 FAD dependent oxidoreductase VF_1701 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VF_1702 PF13406 Transglycosylase SLT domain VF_1703 PF05166 YcgL domain VF_1704 PF03775 Septum formation inhibitor MinC, C-terminal domain VF_1704 PF05209 Septum formation inhibitor MinC, N-terminal domain VF_1705 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VF_1706 PF03776 Septum formation topological specificity factor MinE VF_1707 PF00570 HRDC domain VF_1707 PF01612 3'-5' exonuclease VF_1708 PF00501 AMP-binding enzyme VF_1708 PF13193 AMP-binding enzyme C-terminal domain VF_1709 PF00561 alpha/beta hydrolase fold VF_1710 PF03843 VF_1710 VF_1712 PF00814 Glycoprotease family VF_1713 PF00270 DEAD/DEAH box helicase VF_1713 PF13307 Helicase C-terminal domain VF_1714 PF00551 Formyl transferase VF_1715 PF00561 alpha/beta hydrolase fold VF_1716 PF12833 Helix-turn-helix domain VF_1717 PF00892 EamA-like transporter family VF_1718 PF00155 Aminotransferase class I and II VF_1719 PF00367 phosphotransferase system, EIIB VF_1719 PF02378 Phosphotransferase system, EIIC VF_1720 PF00356 Bacterial regulatory proteins, lacI family VF_1720 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VF_1721 PF01717 Cobalamin-independent synthase, Catalytic domain VF_1721 PF08267 Cobalamin-independent synthase, N-terminal domain VF_1722 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1722 PF03466 LysR substrate binding domain VF_1724 PF03606 VF_1724 VF_1725 PF00561 alpha/beta hydrolase fold VF_1726 PF04055 Radical SAM superfamily VF_1726 PF08497 VF_1726 VF_1726 PF11842 VF_1726 VF_1727 PF00579 tRNA synthetases class I (W and Y) VF_1729 PF13505 Outer membrane protein beta-barrel domain VF_1730 PF00209 Sodium:neurotransmitter symporter family VF_1731 PF13410 Glutathione S-transferase, C-terminal domain VF_1731 PF13417 Glutathione S-transferase, N-terminal domain VF_1732 PF00367 phosphotransferase system, EIIB VF_1732 PF02378 Phosphotransferase system, EIIC VF_1733 PF01026 TatD related DNase VF_1734 PF09115 DNA polymerase III, delta subunit, C terminal VF_1734 PF13177 DNA polymerase III, delta subunit VF_1735 PF02223 Thymidylate kinase VF_1736 PF02618 YceG-like family VF_1737 PF01063 Aminotransferase class IV VF_1738 PF00109 Beta-ketoacyl synthase, N-terminal domain VF_1738 PF02801 Beta-ketoacyl synthase, C-terminal domain VF_1739 PF00550 Phosphopantetheine attachment site VF_1740 PF13561 Enoyl-(Acyl carrier protein) reductase VF_1741 PF00698 Acyl transferase domain VF_1742 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VF_1742 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VF_1743 PF02504 Fatty acid synthesis protein VF_1744 PF01783 Ribosomal L32p protein family VF_1745 PF02620 VF_1745 VF_1746 PF02545 Maf-like protein VF_1747 PF00849 RNA pseudouridylate synthase VF_1747 PF01479 S4 domain VF_1748 PF00575 S1 RNA binding domain VF_1748 PF10150 Ribonuclease E/G family VF_1749 PF00916 VF_1749 VF_1749 PF01740 STAS domain VF_1750 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VF_1751 PF05170 VF_1751 VF_1752 PF00485 Phosphoribulokinase / Uridine kinase family VF_1753 PF10609 ParA/MinD ATPase like VF_1754 PF01588 Putative tRNA binding domain VF_1754 PF09334 tRNA synthetases class I (M) VF_1755 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VF_1756 PF13176 Tetratricopeptide repeat VF_1757 PF06305 VF_1757 VF_1758 PF00216 Bacterial DNA-binding protein VF_1759 PF00575 S1 RNA binding domain VF_1760 PF02224 Cytidylate kinase VF_1761 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VF_1762 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VF_1763 PF04376 VF_1763 VF_1763 PF04377 VF_1763 VF_1764 PF01176 Translation initiation factor 1A / IF-1 VF_1765 PF00004 ATPase family associated with various cellular activities (AAA) VF_1765 PF02861 Clp amino terminal domain VF_1765 PF07724 AAA domain (Cdc48 subfamily) VF_1765 PF10431 C-terminal, D2-small domain, of ClpB protein VF_1766 PF02617 ATP-dependent Clp protease adaptor protein ClpS VF_1767 PF00313 'Cold-shock' DNA-binding domain VF_1768 PF13590 Domain of unknown function (DUF4136) VF_1769 PF02696 VF_1769 VF_1770 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VF_1770 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VF_1771 PF06798 VF_1771 VF_1771 PF08298 PrkA AAA domain VF_1773 PF04285 VF_1773 VF_1774 PF04293 VF_1774 VF_1775 PF03971 Monomeric isocitrate dehydrogenase VF_1776 PF00849 RNA pseudouridylate synthase VF_1778 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1778 PF00672 HAMP domain VF_1779 PF09313 Domain of unknown function (DUF1971) VF_1780 PF00175 Oxidoreductase NAD-binding domain VF_1781 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_1782 PF00258 Flavodoxin VF_1782 PF00301 Rubredoxin VF_1782 PF00753 Metallo-beta-lactamase superfamily VF_1783 PF00158 Sigma-54 interaction domain VF_1783 PF01590 GAF domain VF_1784 PF03054 tRNA methyl transferase VF_1785 PF04356 Protein of unknown function (DUF489) VF_1786 PF00206 Lyase VF_1786 PF08328 Adenylosuccinate lyase C-terminal VF_1787 PF12833 Helix-turn-helix domain VF_1789 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_1789 PF00672 HAMP domain VF_1790 PF00270 DEAD/DEAH box helicase VF_1790 PF00271 Helicase conserved C-terminal domain VF_1791 PF01734 Patatin-like phospholipase VF_1792 PF04073 Aminoacyl-tRNA editing domain VF_1793 PF01268 Formate--tetrahydrofolate ligase VF_1794 PF03887 YfbU domain VF_1795 PF13609 Gram-negative porin VF_1796 PF13847 Methyltransferase domain VF_1797 PF13505 Outer membrane protein beta-barrel domain VF_1798 PF00654 Voltage gated chloride channel VF_1799 PF03279 VF_1799 VF_1800 PF01230 HIT domain VF_1801 PF08891 VF_1801 VF_1802 PF04315 VF_1802 VF_1803 PF02308 VF_1803 VF_1804 PF03458 VF_1804 VF_1805 PF01264 Chorismate synthase VF_1806 PF05175 Methyltransferase small domain VF_1807 PF01713 Smr domain VF_1808 PF00300 Histidine phosphatase superfamily (branch 1) VF_1809 PF00675 Insulinase (Peptidase family M16) VF_1809 PF05193 Peptidase M16 inactive domain VF_1809 PF16187 VF_1809 VF_1810 PF00378 Enoyl-CoA hydratase/isomerase family VF_1810 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VF_1810 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VF_1811 PF00108 Thiolase, N-terminal domain VF_1811 PF02803 Thiolase, C-terminal domain VF_1812 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VF_1813 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VF_1814 PF09997 VF_1814 VF_1815 PF04333 VF_1815 VF_1816 PF14559 Tetratricopeptide repeat VF_1817 PF03918 Cytochrome C biogenesis protein VF_1818 PF08534 Redoxin VF_1819 PF01578 VF_1819 VF_1819 PF16327 VF_1819 VF_1820 PF03100 CcmE VF_1821 PF04995 VF_1821 VF_1822 PF01578 VF_1822 VF_1823 PF03379 VF_1823 VF_1824 PF00005 ABC transporter VF_1825 PF10975 VF_1825 VF_1826 PF01584 CheW-like domain VF_1828 PF01584 CheW-like domain VF_1829 PF13614 AAA domain VF_1830 PF00072 Response regulator receiver domain VF_1830 PF01339 CheB methylesterase VF_1831 PF01584 CheW-like domain VF_1831 PF01627 Hpt domain VF_1831 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1831 PF02895 Signal transducing histidine kinase, homodimeric domain VF_1832 PF04344 Chemotaxis phosphatase, CheZ VF_1833 PF00072 Response regulator receiver domain VF_1834 PF04539 Sigma-70 region 3 VF_1834 PF04542 Sigma-70 region 2 VF_1834 PF04545 Sigma-70, region 4 VF_1835 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VF_1836 PF00448 SRP54-type protein, GTPase domain VF_1837 PF00771 FHIPEP family VF_1838 PF07238 PilZ domain VF_1838 PF12945 Flagellar protein YcgR VF_1839 PF01312 FlhB HrpN YscU SpaS Family VF_1840 PF01311 VF_1840 VF_1841 PF01313 VF_1841 VF_1842 PF00813 VF_1842 VF_1843 PF04347 VF_1843 VF_1844 PF01052 Surface presentation of antigens (SPOA) VF_1845 PF01052 Surface presentation of antigens (SPOA) VF_1845 PF02154 Flagellar motor switch protein FliM VF_1846 PF03748 VF_1846 VF_1847 PF02120 Flagellar hook-length control protein FliK VF_1848 PF02050 Flagellar FliJ protein VF_1849 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VF_1850 PF02108 VF_1850 VF_1850 PF09811 VF_1850 VF_1851 PF01706 FliG C-terminal domain VF_1851 PF14841 FliG middle domain VF_1851 PF14842 FliG N-terminal domain VF_1852 PF01514 Secretory protein of YscJ/FliF family VF_1852 PF08345 VF_1852 VF_1853 PF02049 VF_1853 VF_1854 PF00072 Response regulator receiver domain VF_1854 PF00158 Sigma-54 interaction domain VF_1854 PF02954 Bacterial regulatory protein, Fis family VF_1855 PF00512 His Kinase A (phospho-acceptor) domain VF_1855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1855 PF13188 PAS domain VF_1856 PF00158 Sigma-54 interaction domain VF_1856 PF02954 Bacterial regulatory protein, Fis family VF_1856 PF06490 VF_1856 VF_1858 PF02561 Flagellar protein FliS VF_1860 PF02465 VF_1860 VF_1860 PF07195 VF_1860 VF_1860 PF07196 Flagellin hook IN motif VF_1861 PF03646 FlaG protein VF_1862 PF00669 Bacterial flagellin N-terminal helical region VF_1862 PF00700 Bacterial flagellin C-terminal helical region VF_1862 PF07196 Flagellin hook IN motif VF_1863 PF00669 Bacterial flagellin N-terminal helical region VF_1863 PF00700 Bacterial flagellin C-terminal helical region VF_1863 PF07196 Flagellin hook IN motif VF_1864 PF00669 Bacterial flagellin N-terminal helical region VF_1864 PF00700 Bacterial flagellin C-terminal helical region VF_1864 PF07196 Flagellin hook IN motif VF_1865 PF00669 Bacterial flagellin N-terminal helical region VF_1865 PF00700 Bacterial flagellin C-terminal helical region VF_1865 PF07196 Flagellin hook IN motif VF_1866 PF00669 Bacterial flagellin N-terminal helical region VF_1866 PF00700 Bacterial flagellin C-terminal helical region VF_1866 PF07196 Flagellin hook IN motif VF_1867 PF00669 Bacterial flagellin N-terminal helical region VF_1867 PF00700 Bacterial flagellin C-terminal helical region VF_1868 PF00460 Flagella basal body rod protein VF_1868 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VF_1869 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VF_1869 PF10135 VF_1869 VF_1870 PF02119 VF_1870 VF_1871 PF02107 VF_1871 VF_1872 PF00460 Flagella basal body rod protein VF_1872 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VF_1873 PF00460 Flagella basal body rod protein VF_1873 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VF_1874 PF00460 Flagella basal body rod protein VF_1874 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VF_1874 PF07559 Flagellar basal body protein FlaE VF_1875 PF03963 VF_1875 VF_1875 PF13860 FlgD Ig-like domain VF_1875 PF13861 FlgD Tudor-like domain VF_1876 PF00460 Flagella basal body rod protein VF_1876 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VF_1878 PF01739 CheR methyltransferase, SAM binding domain VF_1878 PF03705 CheR methyltransferase, all-alpha domain VF_1879 PF00072 Response regulator receiver domain VF_1879 PF01584 CheW-like domain VF_1880 PF13144 SAF-like VF_1881 PF04316 Anti-sigma-28 factor, FlgM VF_1882 PF05130 FlgN protein VF_1883 PF02169 LPP20 lipoprotein VF_1885 PF16538 VF_1885 VF_1885 PF16539 VF_1885 VF_1885 PF16548 VF_1885 VF_1886 PF13424 Tetratricopeptide repeat VF_1887 PF00749 tRNA synthetases class I (E and Q), catalytic domain VF_1889 PF13609 Gram-negative porin VF_1890 PF00533 BRCA1 C Terminus (BRCT) domain VF_1890 PF01653 NAD-dependent DNA ligase adenylation domain VF_1890 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VF_1890 PF03120 NAD-dependent DNA ligase OB-fold domain VF_1890 PF12826 Helix-hairpin-helix motif VF_1890 PF14520 Helix-hairpin-helix domain VF_1891 PF04354 ZipA, C-terminal FtsZ-binding domain VF_1892 PF07264 Etoposide-induced protein 2 VF_1893 PF00291 Pyridoxal-phosphate dependent enzyme VF_1894 PF00381 PTS HPr component phosphorylation site VF_1895 PF00391 PEP-utilising enzyme, mobile domain VF_1895 PF02896 PEP-utilising enzyme, TIM barrel domain VF_1895 PF05524 PEP-utilising enzyme, N-terminal VF_1897 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VF_1898 PF04261 Dyp-type peroxidase family VF_1900 PF11143 VF_1900 VF_1901 PF11169 VF_1901 VF_1902 PF09574 VF_1902 VF_1903 PF03264 NapC/NirT cytochrome c family, N-terminal region VF_1904 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VF_1905 PF00384 Molybdopterin oxidoreductase VF_1905 PF01568 Molydopterin dinucleotide binding domain VF_1905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VF_1906 PF03927 NapD protein VF_1907 PF12838 4Fe-4S dicluster domain VF_1907 PF13187 4Fe-4S dicluster domain VF_1908 PF00672 HAMP domain VF_1908 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1908 PF07730 Histidine kinase VF_1908 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VF_1909 PF00072 Response regulator receiver domain VF_1909 PF00196 Bacterial regulatory proteins, luxR family VF_1910 PF13698 VF_1910 VF_1911 PF09904 Winged helix-turn helix VF_1912 PF05488 PAAR motif VF_1913 PF03960 ArsC family VF_1914 PF01546 Peptidase family M20/M25/M40 VF_1914 PF07687 Peptidase dimerisation domain VF_1915 PF02557 D-alanyl-D-alanine carboxypeptidase VF_1916 PF11446 VF_1916 VF_1917 PF06804 NlpB/DapX lipoprotein VF_1918 PF00701 Dihydrodipicolinate synthetase family VF_1919 PF13740 ACT domain VF_1920 PF00578 AhpC/TSA family VF_1921 PF01594 VF_1921 VF_1922 PF01435 Peptidase family M48 VF_1922 PF14559 Tetratricopeptide repeat VF_1923 PF03960 ArsC family VF_1924 PF09842 VF_1924 VF_1925 PF09839 VF_1925 VF_1926 PF00860 Permease family VF_1927 PF14681 Uracil phosphoribosyltransferase VF_1928 PF00586 AIR synthase related protein, N-terminal domain VF_1928 PF02769 AIR synthase related protein, C-terminal domain VF_1929 PF00551 Formyl transferase VF_1930 PF13230 Glutamine amidotransferases class-II VF_1931 PF13580 SIS domain VF_1932 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VF_1932 PF02770 Acyl-CoA dehydrogenase, middle domain VF_1932 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VF_1932 PF09317 VF_1932 VF_1935 PF00929 Exonuclease VF_1936 PF00075 RNase H VF_1937 PF08241 Methyltransferase domain VF_1938 PF00753 Metallo-beta-lactamase superfamily VF_1938 PF16123 VF_1938 VF_1939 PF01464 Transglycosylase SLT domain VF_1939 PF01476 LysM domain VF_1940 PF06930 VF_1940 VF_1941 PF03372 Endonuclease/Exonuclease/phosphatase family VF_1942 PF00543 Nitrogen regulatory protein P-II VF_1943 PF00034 Cytochrome c VF_1945 PF01171 PP-loop family VF_1945 PF09179 TilS substrate binding domain VF_1945 PF11734 TilS substrate C-terminal domain VF_1946 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VF_1947 PF01336 OB-fold nucleic acid binding domain VF_1947 PF02811 PHP domain VF_1947 PF07733 Bacterial DNA polymerase III alpha subunit VF_1947 PF14579 Helix-hairpin-helix motif VF_1948 PF01351 Ribonuclease HII VF_1949 PF02684 VF_1949 VF_1950 PF00132 Bacterial transferase hexapeptide (six repeats) VF_1950 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VF_1951 PF07977 FabA-like domain VF_1952 PF00132 Bacterial transferase hexapeptide (six repeats) VF_1952 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VF_1953 PF03938 Outer membrane protein (OmpH-like) VF_1954 PF01103 Surface antigen VF_1954 PF07244 Surface antigen variable number repeat VF_1955 PF00595 PDZ domain (Also known as DHR or GLGF) VF_1955 PF02163 Peptidase family M50 VF_1956 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VF_1956 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal VF_1956 PF13288 DXP reductoisomerase C-terminal domain VF_1957 PF01148 Cytidylyltransferase family VF_1958 PF01255 Putative undecaprenyl diphosphate synthase VF_1959 PF01765 Ribosome recycling factor VF_1960 PF00696 Amino acid kinase family VF_1961 PF00889 Elongation factor TS VF_1962 PF00318 Ribosomal protein S2 VF_1963 PF00557 Metallopeptidase family M24 VF_1964 PF01842 ACT domain VF_1964 PF01909 Nucleotidyltransferase domain VF_1964 PF01966 HD domain VF_1964 PF08335 GlnD PII-uridylyltransferase VF_1965 PF11944 VF_1965 VF_1966 PF02355 Protein export membrane protein VF_1966 PF07549 SecD/SecF GG Motif VF_1967 PF02355 Protein export membrane protein VF_1967 PF07549 SecD/SecF GG Motif VF_1967 PF13721 SecD export protein N-terminal TM region VF_1968 PF02699 Preprotein translocase subunit VF_1969 PF01702 Queuine tRNA-ribosyltransferase VF_1970 PF02547 Queuosine biosynthesis protein VF_1971 PF00571 CBS domain VF_1972 PF00463 Isocitrate lyase family VF_1973 PF01274 Malate synthase VF_1974 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1974 PF03466 LysR substrate binding domain VF_1975 PF00578 AhpC/TSA family VF_1975 PF10417 C-terminal domain of 1-Cys peroxiredoxin VF_1976 PF03932 CutC family VF_1977 PF04076 Bacterial OB fold (BOF) protein VF_1978 PF13505 Outer membrane protein beta-barrel domain VF_1979 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_1979 PF03466 LysR substrate binding domain VF_1982 PF01895 PhoU domain VF_1983 PF00005 ABC transporter VF_1984 PF00528 Binding-protein-dependent transport system inner membrane component VF_1985 PF00528 Binding-protein-dependent transport system inner membrane component VF_1986 PF12849 PBP superfamily domain VF_1987 PF00512 His Kinase A (phospho-acceptor) domain VF_1987 PF00989 PAS fold VF_1987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_1987 PF11808 VF_1987 VF_1988 PF00072 Response regulator receiver domain VF_1988 PF00486 Transcriptional regulatory protein, C terminal VF_1989 PF04381 Putative exonuclease, RdgC VF_1990 PF01136 VF_1990 VF_1990 PF16325 VF_1990 VF_1991 PF12838 4Fe-4S dicluster domain VF_1992 PF12060 VF_1992 VF_1993 PF00226 DnaJ domain VF_1993 PF00684 DnaJ central domain VF_1993 PF01556 DnaJ C terminal domain VF_1994 PF00012 Hsp70 protein VF_1996 PF01025 GrpE VF_1997 PF01513 ATP-NAD kinase VF_1998 PF02463 RecF/RecN/SMC N terminal domain VF_1999 PF04355 SmpA / OmlA family VF_2000 PF03658 RnfH family Ubiquitin VF_2001 PF03364 Polyketide cyclase / dehydrase and lipid transport VF_2002 PF01668 SmpB protein VF_2003 PF02498 VF_2003 VF_2005 PF10109 VF_2005 VF_2006 PF05944 VF_2006 VF_2007 PF10618 VF_2007 VF_2008 PF04984 Phage tail sheath protein VF_2009 PF05069 VF_2009 VF_2010 PF06891 VF_2010 VF_2011 PF05926 VF_2011 VF_2012 PF05125 VF_2012 VF_2013 PF05929 VF_2013 VF_2014 PF03237 Terminase-like family VF_2014 PF06056 Putative ATPase subunit of terminase (gpP-like) VF_2015 PF04860 Phage portal protein VF_2020 PF03406 VF_2020 VF_2022 PF04865 VF_2022 VF_2023 PF07409 VF_2023 VF_2025 PF06890 Bacteriophage Mu Gp45 protein VF_2027 PF07157 VF_2027 VF_2030 PF16473 VF_2030 VF_2036 PF06892 VF_2036 VF_2037 PF00717 Peptidase S24-like VF_2037 PF01381 Helix-turn-helix VF_2040 PF14213 VF_2040 VF_2041 PF00589 Phage integrase family VF_2042 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_2042 PF00672 HAMP domain VF_2042 PF12729 VF_2042 VF_2043 PF13416 Bacterial extracellular solute-binding protein VF_2044 PF00528 Binding-protein-dependent transport system inner membrane component VF_2045 PF00528 Binding-protein-dependent transport system inner membrane component VF_2046 PF00005 ABC transporter VF_2048 PF06202 Amylo-alpha-1,6-glucosidase VF_2048 PF12439 VF_2048 VF_2049 PF00128 Alpha amylase, catalytic domain VF_2049 PF02903 Alpha amylase, N-terminal ig-like domain VF_2049 PF16657 VF_2049 VF_2051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_2051 PF03466 LysR substrate binding domain VF_2052 PF01769 Divalent cation transporter VF_2055 PF00034 Cytochrome c VF_2055 PF03150 Di-haem cytochrome c peroxidase VF_2055 PF14376 VF_2055 VF_2056 PF08543 Phosphomethylpyrimidine kinase VF_2057 PF01276 Orn/Lys/Arg decarboxylase, major domain VF_2057 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VF_2057 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VF_2058 PF13520 Amino acid permease VF_2059 PF01235 VF_2059 VF_2060 PF00486 Transcriptional regulatory protein, C terminal VF_2061 PF04143 VF_2061 VF_2062 PF04143 VF_2062 VF_2063 PF04204 Homoserine O-succinyltransferase VF_2064 PF03605 VF_2064 VF_2065 PF01773 Na+ dependent nucleoside transporter N-terminus VF_2065 PF07662 Na+ dependent nucleoside transporter C-terminus VF_2065 PF07670 Nucleoside recognition VF_2066 PF10063 VF_2066 VF_2067 PF00140 Sigma-70 factor, region 1 VF_2067 PF04539 Sigma-70 region 3 VF_2067 PF04542 Sigma-70 region 2 VF_2067 PF04545 Sigma-70, region 4 VF_2068 PF01476 LysM domain VF_2068 PF01551 Peptidase family M23 VF_2069 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) VF_2070 PF01975 Survival protein SurE VF_2071 PF01142 tRNA pseudouridine synthase D (TruD) VF_2072 PF02542 YgbB family VF_2073 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VF_2074 PF04977 Septum formation initiator VF_2075 PF00113 Enolase, C-terminal TIM barrel domain VF_2075 PF03952 Enolase, N-terminal domain VF_2076 PF00117 Glutamine amidotransferase class-I VF_2076 PF06418 CTP synthase N-terminus VF_2078 PF03819 MazG nucleotide pyrophosphohydrolase domain VF_2079 PF00669 Bacterial flagellin N-terminal helical region VF_2079 PF00700 Bacterial flagellin C-terminal helical region VF_2079 PF07196 Flagellin hook IN motif VF_2080 PF02824 TGS domain VF_2080 PF04607 Region found in RelA / SpoT proteins VF_2080 PF13291 ACT domain VF_2080 PF13328 HD domain VF_2081 PF01938 TRAM domain VF_2081 PF05958 tRNA (Uracil-5-)-methyltransferase VF_2082 PF00072 Response regulator receiver domain VF_2082 PF00512 His Kinase A (phospho-acceptor) domain VF_2082 PF00672 HAMP domain VF_2082 PF01627 Hpt domain VF_2082 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2082 PF09984 VF_2082 VF_2083 PF01648 4'-phosphopantetheinyl transferase superfamily VF_2084 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VF_2085 PF02565 Recombination protein O C terminal VF_2085 PF11967 Recombination protein O N terminal VF_2086 PF01926 50S ribosome-binding GTPase VF_2086 PF07650 KH domain VF_2087 PF00035 Double-stranded RNA binding motif VF_2087 PF14622 Ribonuclease-III-like VF_2088 PF00717 Peptidase S24-like VF_2088 PF10502 Signal peptidase, peptidase S26 VF_2089 PF00009 Elongation factor Tu GTP binding domain VF_2089 PF00679 Elongation factor G C-terminus VF_2089 PF03144 Elongation factor Tu domain 2 VF_2089 PF06421 GTP-binding protein LepA C-terminus VF_2090 PF04246 VF_2090 VF_2091 PF03888 MucB/RseB family VF_2091 PF17188 VF_2091 VF_2092 PF03872 Anti sigma-E protein RseA, N-terminal domain VF_2092 PF03873 Anti sigma-E protein RseA, C-terminal domain VF_2093 PF04542 Sigma-70 region 2 VF_2093 PF08281 Sigma-70, region 4 VF_2094 PF00890 FAD binding domain VF_2094 PF02910 Fumarate reductase flavoprotein C-term VF_2096 PF03937 Flavinator of succinate dehydrogenase VF_2098 PF04073 Aminoacyl-tRNA editing domain VF_2099 PF06526 Protein of unknown function (DUF1107) VF_2100 PF01494 FAD binding domain VF_2101 PF01494 FAD binding domain VF_2102 PF03695 Uncharacterised protein family (UPF0149) VF_2103 PF05164 Cell division protein ZapA VF_2104 PF01812 5-formyltetrahydrofolate cyclo-ligase family VF_2105 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VF_2106 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VF_2106 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VF_2107 PF04402 Protein of unknown function (DUF541) VF_2108 PF00924 Mechanosensitive ion channel VF_2108 PF05552 Conserved TM helix VF_2109 PF03883 VF_2109 VF_2110 PF01235 VF_2110 VF_2111 PF12065 VF_2111 VF_2112 PF01814 Hemerythrin HHE cation binding domain VF_2113 PF03167 Uracil DNA glycosylase superfamily VF_2114 PF01261 Xylose isomerase-like TIM barrel VF_2115 PF01228 Glycine radical VF_2116 PF00291 Pyridoxal-phosphate dependent enzyme VF_2116 PF14821 Threonine synthase N terminus VF_2117 PF00288 GHMP kinases N terminal domain VF_2117 PF08544 GHMP kinases C terminal VF_2118 PF00696 Amino acid kinase family VF_2118 PF00742 Homoserine dehydrogenase VF_2118 PF01842 ACT domain VF_2118 PF03447 Homoserine dehydrogenase, NAD binding domain VF_2119 PF03737 Demethylmenaquinone methyltransferase VF_2120 PF00072 Response regulator receiver domain VF_2120 PF00486 Transcriptional regulatory protein, C terminal VF_2122 PF00072 Response regulator receiver domain VF_2122 PF00512 His Kinase A (phospho-acceptor) domain VF_2122 PF01627 Hpt domain VF_2122 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2122 PF08448 PAS fold VF_2123 PF04055 Radical SAM superfamily VF_2123 PF16199 VF_2123 VF_2124 PF00310 Glutamine amidotransferases class-II VF_2124 PF01493 GXGXG motif VF_2124 PF01645 Conserved region in glutamate synthase VF_2124 PF04898 Glutamate synthase central domain VF_2125 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_2125 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VF_2126 PF07386 VF_2126 VF_2128 PF01048 Phosphorylase superfamily VF_2129 PF03186 VF_2129 VF_2130 PF03458 VF_2130 VF_2131 PF01551 Peptidase family M23 VF_2132 PF00873 AcrB/AcrD/AcrF family VF_2133 PF16576 VF_2133 VF_2134 PF01521 Iron-sulphur cluster biosynthesis VF_2135 PF00202 Aminotransferase class-III VF_2136 PF01594 VF_2136 VF_2137 PF05175 Methyltransferase small domain VF_2137 PF08468 Methyltransferase small domain N-terminal VF_2138 PF00072 Response regulator receiver domain VF_2138 PF00512 His Kinase A (phospho-acceptor) domain VF_2138 PF00672 HAMP domain VF_2138 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2139 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_2140 PF00528 Binding-protein-dependent transport system inner membrane component VF_2141 PF00528 Binding-protein-dependent transport system inner membrane component VF_2142 PF00005 ABC transporter VF_2142 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_2143 PF00005 ABC transporter VF_2143 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_2144 PF00759 Glycosyl hydrolase family 9 VF_2144 PF02927 N-terminal ig-like domain of cellulase VF_2145 PF01869 BadF/BadG/BcrA/BcrD ATPase family VF_2146 PF00728 Glycosyl hydrolase family 20, catalytic domain VF_2146 PF02838 Glycosyl hydrolase family 20, domain 2 VF_2147 PF06165 Glycosyltransferase family 36 VF_2147 PF17167 VF_2147 VF_2148 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VF_2148 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VF_2148 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VF_2148 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VF_2149 PF00005 ABC transporter VF_2149 PF08402 TOBE domain VF_2150 PF00528 Binding-protein-dependent transport system inner membrane component VF_2151 PF13343 Bacterial extracellular solute-binding protein VF_2152 PF00909 Ammonium Transporter Family VF_2153 PF00543 Nitrogen regulatory protein P-II VF_2154 PF06062 VF_2154 VF_2155 PF05651 VF_2155 VF_2155 PF13556 PucR C-terminal helix-turn-helix domain VF_2156 PF02447 VF_2156 VF_2157 PF02595 Glycerate kinase family VF_2158 PF00330 Aconitase family (aconitate hydratase) VF_2158 PF06434 Aconitate hydratase 2 N-terminus VF_2158 PF11791 Aconitate B N-terminal domain VF_2159 PF01734 Patatin-like phospholipase VF_2159 PF07244 Surface antigen variable number repeat VF_2161 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_2161 PF17200 VF_2161 VF_2162 PF00905 Penicillin binding protein transpeptidase domain VF_2162 PF00912 Transglycosylase VF_2162 PF14814 Bifunctional transglycosylase second domain VF_2163 PF00270 DEAD/DEAH box helicase VF_2163 PF00271 Helicase conserved C-terminal domain VF_2163 PF04408 Helicase associated domain (HA2) VF_2163 PF08482 VF_2163 VF_2164 PF03749 Sugar fermentation stimulation protein VF_2165 PF01258 Prokaryotic dksA/traR C4-type zinc finger VF_2166 PF01743 Poly A polymerase head domain VF_2166 PF12626 Polymerase A arginine-rich C-terminus VF_2166 PF12627 Probable RNA and SrmB- binding site of polymerase A VF_2168 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VF_2169 PF02548 Ketopantoate hydroxymethyltransferase VF_2170 PF02569 Pantoate-beta-alanine ligase VF_2171 PF01061 VF_2171 VF_2172 PF00005 ABC transporter VF_2173 PF00916 VF_2173 VF_2173 PF01740 STAS domain VF_2174 PF00484 Carbonic anhydrase VF_2176 PF00156 Phosphoribosyl transferase domain VF_2177 PF00440 Bacterial regulatory proteins, tetR family VF_2178 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VF_2178 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_2179 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VF_2179 PF00364 Biotin-requiring enzyme VF_2179 PF02817 e3 binding domain VF_2181 PF00456 Transketolase, thiamine diphosphate binding domain VF_2182 PF00392 Bacterial regulatory proteins, gntR family VF_2182 PF07729 FCD domain VF_2183 PF01510 N-acetylmuramoyl-L-alanine amidase VF_2184 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VF_2184 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VF_2185 PF00114 Pilin (bacterial filament) VF_2185 PF13633 Prokaryotic N-terminal methylation site VF_2186 PF00437 Type II/IV secretion system protein VF_2186 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VF_2187 PF00482 Type II secretion system (T2SS), protein F VF_2188 PF01478 Type IV leader peptidase family VF_2188 PF06750 VF_2188 VF_2189 PF01121 Dephospho-CoA kinase VF_2190 PF07072 Protein of unknown function (DUF1342) VF_2191 PF03884 Domain of unknown function (DUF329) VF_2192 PF00293 NUDIX domain VF_2193 PF01043 SecA preprotein cross-linking domain VF_2193 PF02810 SEC-C motif VF_2193 PF07516 SecA Wing and Scaffold domain VF_2193 PF07517 SecA DEAD-like domain VF_2194 PF05258 VF_2194 VF_2195 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VF_2196 PF00091 Tubulin/FtsZ family, GTPase domain VF_2196 PF12327 FtsZ family, C-terminal domain VF_2197 PF02491 SHS2 domain inserted in FTSA VF_2197 PF14450 Cell division protein FtsA VF_2199 PF03799 Cell division protein FtsQ VF_2199 PF08478 POTRA domain, FtsQ-type VF_2200 PF01225 Mur ligase family, catalytic domain VF_2200 PF02875 Mur ligase family, glutamate ligase domain VF_2200 PF08245 Mur ligase middle domain VF_2201 PF03033 Glycosyltransferase family 28 N-terminal domain VF_2201 PF04101 Glycosyltransferase family 28 C-terminal domain VF_2202 PF01098 VF_2202 VF_2203 PF02875 Mur ligase family, glutamate ligase domain VF_2203 PF08245 Mur ligase middle domain VF_2204 PF00953 Glycosyl transferase family 4 VF_2204 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VF_2205 PF01225 Mur ligase family, catalytic domain VF_2205 PF02875 Mur ligase family, glutamate ligase domain VF_2205 PF08245 Mur ligase middle domain VF_2206 PF01225 Mur ligase family, catalytic domain VF_2206 PF02875 Mur ligase family, glutamate ligase domain VF_2206 PF08245 Mur ligase middle domain VF_2207 PF00905 Penicillin binding protein transpeptidase domain VF_2207 PF03717 Penicillin-binding Protein dimerisation domain VF_2208 PF04999 VF_2208 VF_2209 PF01795 MraW methylase family VF_2210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VF_2211 PF04348 LppC putative lipoprotein VF_2212 PF02021 Uncharacterised protein family UPF0102 VF_2213 PF13580 SIS domain VF_2214 PF04972 BON domain VF_2215 PF04386 Stringent starvation protein B VF_2216 PF00043 Glutathione S-transferase, C-terminal domain VF_2216 PF13417 Glutathione S-transferase, N-terminal domain VF_2217 PF02167 Cytochrome C1 family VF_2218 PF00032 Cytochrome b(C-terminal)/b6/petD VF_2218 PF00033 Cytochrome b(N-terminal)/b6/petB VF_2220 PF00355 Rieske [2Fe-2S] domain VF_2220 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VF_2221 PF00380 Ribosomal protein S9/S16 VF_2222 PF00572 Ribosomal protein L13 VF_2223 PF03969 AFG1-like ATPase VF_2224 PF06295 VF_2224 VF_2225 PF00595 PDZ domain (Also known as DHR or GLGF) VF_2225 PF13180 PDZ domain VF_2225 PF13365 Trypsin-like peptidase domain VF_2226 PF13180 PDZ domain VF_2226 PF13365 Trypsin-like peptidase domain VF_2227 PF00521 DNA gyrase/topoisomerase IV, subunit A VF_2227 PF03989 DNA gyrase C-terminal domain, beta-propeller VF_2228 PF00204 DNA gyrase B VF_2228 PF00986 DNA gyrase B subunit, carboxyl terminus VF_2228 PF01751 Toprim domain VF_2228 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2229 PF05728 Uncharacterised protein family (UPF0227) VF_2230 PF00149 Calcineurin-like phosphoesterase VF_2231 PF06853 VF_2231 VF_2232 PF00293 NUDIX domain VF_2233 PF02321 Outer membrane efflux protein VF_2234 PF00294 pfkB family carbohydrate kinase VF_2234 PF01467 Cytidylyltransferase VF_2235 PF03710 Glutamate-ammonia ligase adenylyltransferase VF_2235 PF08335 GlnD PII-uridylyltransferase VF_2236 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_2236 PF00672 HAMP domain VF_2237 PF00520 Ion transport protein VF_2238 PF01928 CYTH domain VF_2239 PF01865 Protein of unknown function DUF47 VF_2240 PF01384 VF_2240 VF_2241 PF08239 Bacterial SH3 domain VF_2242 PF16537 VF_2242 VF_2243 PF01471 Putative peptidoglycan binding domain VF_2243 PF13401 AAA domain VF_2244 PF01743 Poly A polymerase head domain VF_2244 PF01966 HD domain VF_2244 PF12627 Probable RNA and SrmB- binding site of polymerase A VF_2245 PF02673 VF_2245 VF_2246 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VF_2247 PF02152 Dihydroneopterin aldolase VF_2248 PF02660 VF_2248 VF_2249 PF00814 Glycoprotease family VF_2250 PF01165 Ribosomal protein S21 VF_2251 PF09424 Yqey-like protein VF_2252 PF01807 CHC2 zinc finger VF_2252 PF08275 DNA primase catalytic core, N-terminal domain VF_2252 PF08278 DNA primase DnaG DnaB-binding VF_2252 PF10410 DnaB-helicase binding domain of primase VF_2252 PF13155 Toprim-like VF_2254 PF00140 Sigma-70 factor, region 1 VF_2254 PF03979 Sigma-70 factor, region 1 VF_2254 PF04539 Sigma-70 region 3 VF_2254 PF04542 Sigma-70 region 2 VF_2254 PF04545 Sigma-70, region 4 VF_2254 PF04546 Sigma-70, non-essential region VF_2255 PF13505 Outer membrane protein beta-barrel domain VF_2256 PF00501 AMP-binding enzyme VF_2256 PF13193 AMP-binding enzyme C-terminal domain VF_2258 PF00224 Pyruvate kinase, barrel domain VF_2258 PF02887 Pyruvate kinase, alpha/beta domain VF_2259 PF00392 Bacterial regulatory proteins, gntR family VF_2259 PF07729 FCD domain VF_2261 PF00990 GGDEF domain VF_2261 PF13426 PAS domain VF_2262 PF10369 Small subunit of acetolactate synthase VF_2262 PF13710 ACT domain VF_2263 PF00205 Thiamine pyrophosphate enzyme, central domain VF_2263 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VF_2263 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VF_2264 PF00501 AMP-binding enzyme VF_2265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_2265 PF03466 LysR substrate binding domain VF_2266 PF00696 Amino acid kinase family VF_2266 PF00742 Homoserine dehydrogenase VF_2266 PF03447 Homoserine dehydrogenase, NAD binding domain VF_2267 PF01053 Cys/Met metabolism PLP-dependent enzyme VF_2268 PF01340 Met Apo-repressor, MetJ VF_2269 PF00128 Alpha amylase, catalytic domain VF_2270 PF02264 LamB porin VF_2271 PF07148 VF_2271 VF_2272 PF00390 Malic enzyme, N-terminal domain VF_2272 PF03949 Malic enzyme, NAD binding domain VF_2273 PF01197 Ribosomal protein L31 VF_2274 PF00270 DEAD/DEAH box helicase VF_2274 PF00271 Helicase conserved C-terminal domain VF_2275 PF00356 Bacterial regulatory proteins, lacI family VF_2275 PF13377 Periplasmic binding protein-like domain VF_2276 PF05036 Sporulation related domain VF_2277 PF00227 Proteasome subunit VF_2278 PF00004 ATPase family associated with various cellular activities (AAA) VF_2278 PF07724 AAA domain (Cdc48 subfamily) VF_2278 PF10431 C-terminal, D2-small domain, of ClpB protein VF_2279 PF02566 OsmC-like protein VF_2280 PF00027 Cyclic nucleotide-binding domain VF_2280 PF00325 Bacterial regulatory proteins, crp family VF_2281 PF07063 Domain of unknown function (DUF1338) VF_2282 PF00171 Aldehyde dehydrogenase family VF_2283 PF04958 Arginine N-succinyltransferase beta subunit VF_2284 PF00202 Aminotransferase class-III VF_2285 PF00117 Glutamine amidotransferase class-I VF_2286 PF00579 tRNA synthetases class I (W and Y) VF_2287 PF13419 Haloacid dehalogenase-like hydrolase VF_2288 PF00834 Ribulose-phosphate 3 epimerase family VF_2289 PF02086 D12 class N6 adenine-specific DNA methyltransferase VF_2290 PF05036 Sporulation related domain VF_2290 PF13401 AAA domain VF_2291 PF01761 3-dehydroquinate synthase VF_2292 PF01202 Shikimate kinase VF_2293 PF00263 VF_2293 VF_2293 PF03958 Bacterial type II/III secretion system short domain VF_2294 PF04351 Pilus assembly protein, PilP VF_2295 PF04350 Pilus assembly protein, PilO VF_2296 PF05137 VF_2296 VF_2297 PF11104 Type IV pilus assembly protein PilM; VF_2298 PF00905 Penicillin binding protein transpeptidase domain VF_2298 PF00912 Transglycosylase VF_2298 PF17092 VF_2298 VF_2299 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_2299 PF03466 LysR substrate binding domain VF_2300 PF00462 Glutaredoxin VF_2300 PF08534 Redoxin VF_2301 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VF_2301 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_2302 PF12292 VF_2302 VF_2303 PF00206 Lyase VF_2303 PF00583 Acetyltransferase (GNAT) family VF_2303 PF14698 Argininosuccinate lyase C-terminal VF_2304 PF00764 Arginosuccinate synthase VF_2305 PF00696 Amino acid kinase family VF_2306 PF01118 Semialdehyde dehydrogenase, NAD binding domain VF_2306 PF02774 Semialdehyde dehydrogenase, dimerisation domain VF_2307 PF01546 Peptidase family M20/M25/M40 VF_2307 PF07687 Peptidase dimerisation domain VF_2308 PF00311 Phosphoenolpyruvate carboxylase VF_2309 PF02219 Methylenetetrahydrofolate reductase VF_2310 PF01281 Ribosomal protein L9, N-terminal domain VF_2310 PF03948 Ribosomal protein L9, C-terminal domain VF_2311 PF01084 Ribosomal protein S18 VF_2312 PF01250 Ribosomal protein S6 VF_2313 PF00588 SpoU rRNA Methylase family VF_2313 PF08032 RNA 2'-O ribose methyltransferase substrate binding VF_2314 PF00575 S1 RNA binding domain VF_2314 PF00773 RNB domain VF_2314 PF08206 Ribonuclease B OB domain VF_2314 PF08461 Ribonuclease R winged-helix domain VF_2315 PF02082 Transcriptional regulator VF_2316 PF00042 Globin VF_2316 PF00175 Oxidoreductase NAD-binding domain VF_2316 PF00970 Oxidoreductase FAD-binding domain VF_2317 PF08238 Sel1 repeat VF_2318 PF00709 Adenylosuccinate synthetase VF_2319 PF09838 VF_2319 VF_2320 PF01145 SPFH domain / Band 7 family VF_2321 PF01145 SPFH domain / Band 7 family VF_2321 PF12221 VF_2321 VF_2322 PF01926 50S ribosome-binding GTPase VF_2322 PF13167 VF_2322 VF_2322 PF16360 VF_2322 VF_2324 PF01715 IPP transferase VF_2325 PF01119 DNA mismatch repair protein, C-terminal domain VF_2325 PF08676 MutL C terminal dimerisation domain VF_2325 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2326 PF01476 LysM domain VF_2326 PF01520 N-acetylmuramoyl-L-alanine amidase VF_2326 PF11741 AMIN domain VF_2327 PF02367 Uncharacterised P-loop hydrolase UPF0079 VF_2328 PF08331 VF_2328 VF_2328 PF13484 VF_2328 VF_2329 PF00929 Exonuclease VF_2330 PF03193 Protein of unknown function, DUF258 VF_2331 PF02666 VF_2331 VF_2332 PF00892 EamA-like transporter family VF_2333 PF00152 tRNA synthetases class II (D, K and N) VF_2334 PF00890 FAD binding domain VF_2334 PF02910 Fumarate reductase flavoprotein C-term VF_2335 PF13085 2Fe-2S iron-sulfur cluster binding domain VF_2335 PF13183 4Fe-4S dicluster domain VF_2336 PF02300 Fumarate reductase subunit C VF_2337 PF02313 Fumarate reductase subunit D VF_2338 PF01132 Elongation factor P (EF-P) OB domain VF_2338 PF08207 Elongation factor P (EF-P) KOW-like domain VF_2338 PF09285 Elongation factor P, C-terminal VF_2339 PF04055 Radical SAM superfamily VF_2339 PF13353 4Fe-4S single cluster domain VF_2340 PF00365 Phosphofructokinase VF_2341 PF01545 Cation efflux family VF_2341 PF16916 VF_2341 VF_2342 PF07813 LTXXQ motif family protein VF_2343 PF00072 Response regulator receiver domain VF_2343 PF00486 Transcriptional regulatory protein, C terminal VF_2344 PF00512 His Kinase A (phospho-acceptor) domain VF_2344 PF00672 HAMP domain VF_2344 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2344 PF16527 VF_2344 VF_2345 PF00588 SpoU rRNA Methylase family VF_2347 PF00132 Bacterial transferase hexapeptide (six repeats) VF_2347 PF06426 Serine acetyltransferase, N-terminal VF_2348 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VF_2348 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VF_2349 PF02556 Preprotein translocase subunit SecB VF_2350 PF00581 Rhodanese-like domain VF_2351 PF01551 Peptidase family M23 VF_2352 PF04186 VF_2352 VF_2353 PF00206 Lyase VF_2353 PF10415 Fumarase C C-terminus VF_2354 PF03605 VF_2354 VF_2355 PF00582 Universal stress protein family VF_2356 PF02683 VF_2356 VF_2356 PF11412 Disulphide bond corrector protein DsbC VF_2356 PF13899 Thioredoxin-like VF_2357 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VF_2358 PF07690 Major Facilitator Superfamily VF_2359 PF05706 Cyclin-dependent kinase inhibitor 3 (CDKN3) VF_2360 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VF_2360 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VF_2361 PF01022 Bacterial regulatory protein, arsR family VF_2362 PF00990 GGDEF domain VF_2362 PF13185 GAF domain VF_2363 PF01103 Surface antigen VF_2364 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_2366 PF01297 Periplasmic solute binding protein family VF_2367 PF00005 ABC transporter VF_2368 PF00950 VF_2368 VF_2369 PF00132 Bacterial transferase hexapeptide (six repeats) VF_2370 PF02492 CobW/HypB/UreG, nucleotide-binding domain VF_2372 PF01380 SIS domain VF_2372 PF13522 Glutamine amidotransferase domain VF_2373 PF00455 VF_2373 VF_2373 PF08220 DeoR-like helix-turn-helix domain VF_2374 PF00072 Response regulator receiver domain VF_2374 PF00196 Bacterial regulatory proteins, luxR family VF_2375 PF01914 VF_2375 VF_2376 PF13937 VF_2376 VF_2377 PF00474 Sodium:solute symporter family VF_2379 PF00072 Response regulator receiver domain VF_2379 PF00512 His Kinase A (phospho-acceptor) domain VF_2379 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VF_2379 PF12860 VF_2379 VF_2380 PF12832 MFS_1 like family VF_2381 PF00027 Cyclic nucleotide-binding domain VF_2381 PF00571 CBS domain VF_2381 PF03445 VF_2381 VF_2381 PF10335 VF_2381 VF_2382 PF00929 Exonuclease VF_2383 PF00501 AMP-binding enzyme VF_2383 PF13193 AMP-binding enzyme C-terminal domain VF_2383 PF16177 VF_2383 VF_2385 PF01220 Dehydroquinase class II VF_2386 PF00364 Biotin-requiring enzyme VF_2387 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain VF_2387 PF02785 Biotin carboxylase C-terminal domain VF_2387 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VF_2388 PF06325 Ribosomal protein L11 methyltransferase (PrmA) VF_2389 PF01207 Dihydrouridine synthase (Dus) VF_2391 PF02954 Bacterial regulatory protein, Fis family VF_2393 PF13411 MerR HTH family regulatory protein VF_2394 PF01808 AICARFT/IMPCHase bienzyme VF_2394 PF02142 MGS-like domain VF_2395 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VF_2395 PF02843 Phosphoribosylglycinamide synthetase, C domain VF_2395 PF02844 Phosphoribosylglycinamide synthetase, N domain VF_2396 PF07356 VF_2396 VF_2397 PF00216 Bacterial DNA-binding protein VF_2398 PF00571 CBS domain VF_2398 PF01595 VF_2398 VF_2399 PF04222 Protein of unknown function (DUF416) VF_2400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VF_2401 PF05099 Tellurite resistance protein TerB VF_2402 PF01208 Uroporphyrinogen decarboxylase (URO-D) VF_2403 PF00293 NUDIX domain VF_2403 PF09297 NADH pyrophosphatase zinc ribbon domain VF_2404 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VF_2405 PF03783 Curli production assembly/transport component CsgG VF_2406 PF10614 VF_2406 VF_2407 PF10627 VF_2407 VF_2408 PF00196 Bacterial regulatory proteins, luxR family VF_2409 PF07012 VF_2409 VF_2410 PF07012 VF_2410 VF_2412 PF00623 RNA polymerase Rpb1, domain 2 VF_2412 PF04983 RNA polymerase Rpb1, domain 3 VF_2412 PF04997 RNA polymerase Rpb1, domain 1 VF_2412 PF04998 RNA polymerase Rpb1, domain 5 VF_2412 PF05000 RNA polymerase Rpb1, domain 4 VF_2414 PF00562 RNA polymerase Rpb2, domain 6 VF_2414 PF04560 RNA polymerase Rpb2, domain 7 VF_2414 PF04561 RNA polymerase Rpb2, domain 2 VF_2414 PF04563 RNA polymerase beta subunit VF_2414 PF04565 RNA polymerase Rpb2, domain 3 VF_2414 PF10385 RNA polymerase beta subunit external 1 domain VF_2415 PF00542 Ribosomal protein L7/L12 C-terminal domain VF_2415 PF16320 VF_2415 VF_2416 PF00466 Ribosomal protein L10 VF_2418 PF00687 Ribosomal protein L1p/L10e family VF_2419 PF00298 Ribosomal protein L11, RNA binding domain VF_2419 PF03946 Ribosomal protein L11, N-terminal domain VF_2421 PF00467 KOW motif VF_2421 PF02357 Transcription termination factor nusG VF_2422 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VF_2423 PF00009 Elongation factor Tu GTP binding domain VF_2423 PF03143 Elongation factor Tu C-terminal domain VF_2423 PF03144 Elongation factor Tu domain 2 VF_2424 PF00485 Phosphoribulokinase / Uridine kinase family VF_2425 PF02237 Biotin protein ligase C terminal domain VF_2425 PF03099 Biotin/lipoate A/B protein ligase family VF_2425 PF08279 HTH domain VF_2426 PF01565 FAD binding domain VF_2426 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VF_2428 PF13091 PLD-like domain VF_2432 PF00076 RNA recognition motif VF_2433 PF01177 Asp/Glu/Hydantoin racemase VF_2434 PF01902 ATP-binding region VF_2435 PF00593 TonB dependent receptor VF_2435 PF07715 TonB-dependent Receptor Plug Domain VF_2436 PF05958 tRNA (Uracil-5-)-methyltransferase VF_2437 PF07226 VF_2437 VF_2438 PF00440 Bacterial regulatory proteins, tetR family VF_2439 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VF_2439 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_2440 PF01554 MatE VF_2441 PF04072 Leucine carboxyl methyltransferase VF_2442 PF00717 Peptidase S24-like VF_2442 PF01726 LexA DNA binding domain VF_2443 PF01553 Acyltransferase VF_2444 PF01040 UbiA prenyltransferase family VF_2445 PF04345 Chorismate lyase VF_2446 PF03748 VF_2446 VF_2447 PF01694 Rhomboid family VF_2447 PF12122 Protein of unknown function (DUF3582) VF_2448 PF00581 Rhodanese-like domain VF_2450 PF00140 Sigma-70 factor, region 1 VF_2450 PF04542 Sigma-70 region 2 VF_2450 PF04545 Sigma-70, region 4 VF_2451 PF02687 VF_2451 VF_2452 PF00005 ABC transporter VF_2453 PF00448 SRP54-type protein, GTPase domain VF_2453 PF02881 SRP54-type protein, helical bundle domain VF_2454 PF03602 Conserved hypothetical protein 95 VF_2455 PF06611 VF_2455 VF_2456 PF01914 VF_2456 VF_2457 PF10678 VF_2457 VF_2459 PF10694 Protein of unknown function (DUF2500) VF_2460 PF00270 DEAD/DEAH box helicase VF_2460 PF00271 Helicase conserved C-terminal domain VF_2460 PF17191 VF_2460 VF_2461 PF01106 NifU-like domain VF_2461 PF01521 Iron-sulphur cluster biosynthesis VF_2462 PF00459 Inositol monophosphatase family VF_2463 PF00293 NUDIX domain VF_2464 PF01203 VF_2464 VF_2465 PF04612 Type II secretion system (T2SS), protein M VF_2466 PF05134 Type II secretion system (T2SS), protein L VF_2466 PF12693 GspL periplasmic domain VF_2467 PF03934 Type II secretion system (T2SS), protein K VF_2468 PF11612 Type II secretion system (T2SS), protein J VF_2468 PF13633 Prokaryotic N-terminal methylation site VF_2469 PF02501 Type II secretion system (T2SS), protein I VF_2469 PF13633 Prokaryotic N-terminal methylation site VF_2470 PF12019 Type II transport protein GspH VF_2471 PF08334 Type II secretion system (T2SS), protein G VF_2471 PF13544 VF_2471 VF_2472 PF00482 Type II secretion system (T2SS), protein F VF_2473 PF00437 Type II/IV secretion system protein VF_2474 PF00263 VF_2474 VF_2474 PF03958 Bacterial type II/III secretion system short domain VF_2475 PF11356 Type IV pilus biogenesis VF_2476 PF01479 S4 domain VF_2477 PF01430 Hsp33 protein VF_2478 PF01293 Phosphoenolpyruvate carboxykinase VF_2479 PF05170 VF_2479 VF_2480 PF00563 EAL domain VF_2480 PF08668 HDOD domain VF_2481 PF12146 Putative lysophospholipase VF_2482 PF08282 haloacid dehalogenase-like hydrolase VF_2483 PF00589 Phage integrase family VF_2483 PF02899 Phage integrase, N-terminal SAM-like domain VF_2484 PF01678 Diaminopimelate epimerase VF_2485 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VF_2485 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VF_2486 PF01491 Frataxin-like domain VF_2487 PF01432 Peptidase family M3 VF_2488 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ VF_2489 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VF_2489 PF07992 Pyridine nucleotide-disulphide oxidoreductase VF_2490 PF00440 Bacterial regulatory proteins, tetR family VF_2491 PF03895 YadA-like C-terminal region VF_2492 PF13462 Thioredoxin VF_2493 PF00085 Thioredoxin VF_2494 PF02683 VF_2494 VF_2494 PF11412 Disulphide bond corrector protein DsbC VF_2494 PF13899 Thioredoxin-like VF_2496 PF00069 Protein kinase domain VF_2498 PF07638 ECF sigma factor VF_2503 PF14272 VF_2503 VF_2504 PF14189 VF_2504 VF_2505 PF14188 VF_2505 VF_2506 PF14187 VF_2506 VF_2507 PF01979 Amidohydrolase family VF_2508 PF03841 L-seryl-tRNA selenium transferase VF_2509 PF07071 Protein of unknown function (DUF1341) VF_2510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VF_2510 PF00874 PRD domain VF_2510 PF05043 Mga helix-turn-helix domain VF_2510 PF08279 HTH domain VF_2513 PF00027 Cyclic nucleotide-binding domain VF_2513 PF00571 CBS domain VF_2513 PF03445 VF_2513 VF_2513 PF10335 VF_2513 VF_2514 PF00929 Exonuclease VF_2515 PF02028 BCCT family transporter VF_2516 PF00528 Binding-protein-dependent transport system inner membrane component VF_2516 PF12911 VF_2516 VF_2517 PF00528 Binding-protein-dependent transport system inner membrane component VF_2518 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VF_2519 PF00005 ABC transporter VF_2519 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VF_2520 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VF_2521 PF00580 UvrD/REP helicase N-terminal domain VF_2521 PF13361 UvrD-like helicase C-terminal domain VF_2522 PF00440 Bacterial regulatory proteins, tetR family VF_2522 PF16295 VF_2522 VF_2523 PF16576 VF_2523 VF_2524 PF00873 AcrB/AcrD/AcrF family VF_2525 PF04380 VF_2525 VF_2528 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VF_2528 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain VF_2529 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VF_2529 PF03466 LysR substrate binding domain VF_2533 PF00132 Bacterial transferase hexapeptide (six repeats) VF_2534 PF07369 Protein of unknown function (DUF1488) VF_2535 PF01488 Shikimate / quinate 5-dehydrogenase VF_2535 PF08501 Shikimate dehydrogenase substrate binding domain VF_2536 PF01300 Telomere recombination VF_2537 PF00731 AIR carboxylase VF_2538 PF02222 ATP-grasp domain VF_2539 PF01396 VF_2539 VF_2540 PF04361 VF_2540 VF_2541 PF02481 DNA recombination-mediator protein A VF_2542 PF01476 LysM domain VF_2543 PF01327 Polypeptide deformylase VF_2544 PF00551 Formyl transferase VF_2544 PF02911 Formyl transferase, C-terminal domain VF_2545 PF01029 NusB family VF_2545 PF01189 NOL1/NOP2/sun family VF_2546 PF02080 TrkA-C domain VF_2546 PF02254 TrkA-N domain VF_2547 PF02386 Cation transport protein VF_2548 PF03006 VF_2548 VF_2549 PF07070 VF_2549 VF_2550 PF06288 Protein of unknown function (DUF1040) VF_2551 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VF_2551 PF12801 VF_2551 VF_2551 PF13746 4Fe-4S dicluster domain VF_2552 PF01636 Phosphotransferase enzyme family VF_2553 PF01323 DSBA-like thioredoxin domain VF_2554 PF01553 Acyltransferase VF_2555 PF01078 Magnesium chelatase, subunit ChlI VF_2555 PF13335 VF_2555 VF_2555 PF13541 Subunit ChlI of Mg-chelatase VF_2556 PF00205 Thiamine pyrophosphate enzyme, central domain VF_2556 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VF_2556 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VF_2557 PF13710 ACT domain VF_2558 PF01063 Aminotransferase class IV VF_2559 PF00920 Dehydratase family VF_2560 PF00291 Pyridoxal-phosphate dependent enzyme VF_2560 PF00585 C-terminal regulatory domain of Threonine dehydratase VF_2561 PF00313 'Cold-shock' DNA-binding domain VF_2562 PF00132 Bacterial transferase hexapeptide (six repeats) VF_2562 PF12804 MobA-like NTP transferase domain VF_2563 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VF_2563 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VF_2564 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VF_2564 PF02874 ATP synthase alpha/beta family, beta-barrel domain VF_2565 PF00231 ATP synthase VF_2566 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VF_2566 PF00306 ATP synthase alpha/beta chain, C terminal domain VF_2566 PF02874 ATP synthase alpha/beta family, beta-barrel domain VF_2567 PF00213 ATP synthase delta (OSCP) subunit VF_2568 PF00430 ATP synthase B/B' CF(0) VF_2569 PF00137 ATP synthase subunit C VF_2570 PF00119 ATP synthase A chain VF_2571 PF03899 VF_2571 VF_2572 PF02195 ParB-like nuclease domain VF_2573 PF13614 AAA domain VF_2574 PF02527 rRNA small subunit methyltransferase G VF_2575 PF01134 Glucose inhibited division protein A VF_2575 PF13932 GidA associated domain 3 VF_2576 PF02597 ThiS family VF_2581 PF04932 VF_2581 VF_2582 PF04077 DsrH like protein VF_2589 PF02390 Putative methyltransferase VF_2591 PF02464 Competence-damaged protein VF_2592 PF04277 VF_2592 VF_2602 PF04715 Anthranilate synthase component I, N terminal region VF_2616 PF04116 VF_2616 VF_2617 PF14255 VF_2617 VF_2618 PF03206 VF_2618 VF_2629 PF01679 VF_2629 VF_2630 PF14056 VF_2630 VF_2637 PF01206 Sulfurtransferase TusA VF_2640 PF10948 VF_2640 VF_2647 PF14549 DNA-binding transcriptional regulator Cro VF_2653 PF00749 tRNA synthetases class I (E and Q), catalytic domain VF_2659 PF04340 Protein of unknown function, DUF484 VF_2660 PF13627 VF_2660 VF_A0010 PF01751 Toprim domain VF_A0023 PF00108 Thiolase, N-terminal domain VF_A0023 PF02803 Thiolase, C-terminal domain VF_A0025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VF_A0041 PF00728 Glycosyl hydrolase family 20, catalytic domain VF_A0041 PF14845 beta-acetyl hexosaminidase like VF_A0058 PF02541 Ppx/GppA phosphatase family VF_A0076 PF07690 Major Facilitator Superfamily VF_A0094 PF00672 HAMP domain VF_A0184 PF01370 NAD dependent epimerase/dehydratase family VF_A0194 PF02719 Polysaccharide biosynthesis protein VF_A0221 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VF_A0221 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VF_A0255 PF01018 GTP1/OBG VF_A0255 PF01926 50S ribosome-binding GTPase VF_A0282 PF00342 Phosphoglucose isomerase VF_A0362 PF10150 Ribonuclease E/G family VF_A0371 PF00571 CBS domain VF_A0426 PF05524 PEP-utilising enzyme, N-terminal VF_A0443 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VF_A0443 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VF_A0474 PF01048 Phosphorylase superfamily VF_A0480 PF00437 Type II/IV secretion system protein VF_A0495 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VF_A0497 PF00501 AMP-binding enzyme VF_A0504 PF01411 tRNA synthetases class II (A) VF_A0524 PF02978 Signal peptide binding domain VF_A0538 PF07724 AAA domain (Cdc48 subfamily) VF_A0553 PF00580 UvrD/REP helicase N-terminal domain VF_A0557 PF13538 UvrD-like helicase C-terminal domain VF_A0557 PF13604 AAA domain VF_A0582 PF00232 Glycosyl hydrolase family 1 VF_A0605 PF04551 GcpE protein VF_A0611 PF01926 50S ribosome-binding GTPase VF_A0611 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VF_A0624 PF00756 Putative esterase VF_A0630 PF00107 Zinc-binding dehydrogenase VF_A0653 PF00701 Dihydrodipicolinate synthetase family VF_A0657 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase VF_A0674 PF04073 Aminoacyl-tRNA editing domain VF_A0730 PF02562 PhoH-like protein VF_A0751 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A0751 PF00672 HAMP domain VF_A0751 PF02743 Cache domain VF_A0755 PF08282 haloacid dehalogenase-like hydrolase VF_A0758 PF00403 Heavy-metal-associated domain VF_A0763 PF00528 Binding-protein-dependent transport system inner membrane component VF_A0771 PF00183 Hsp90 protein VF_A0803 PF00676 Dehydrogenase E1 component VF_A0838 PF00109 Beta-ketoacyl synthase, N-terminal domain VF_A0838 PF02801 Beta-ketoacyl synthase, C-terminal domain VF_A0876 PF06097 VF_A0876 VF_A0918 PF08003 Protein of unknown function (DUF1698) VF_A0955 PF00107 Zinc-binding dehydrogenase VF_A0971 PF06744 VF_A0971 VF_A0982 PF07724 AAA domain (Cdc48 subfamily) VF_A0982 PF10431 C-terminal, D2-small domain, of ClpB protein VF_A0986 PF05947 VF_A0986 VF_A0995 PF00815 Histidinol dehydrogenase VF_A1027 PF01131 DNA topoisomerase VF_A1032 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VF_A1032 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VF_A1035 PF00182 Chitinase class I VF_A1063 PF03605 VF_A1063 VF_A1069 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VF_A1069 PF08376 Nitrate and nitrite sensing VF_A1070 PF08376 Nitrate and nitrite sensing VF_A1101 PF00854 POT family VF_A1141 PF05951 VF_A1141 VF_A1180 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VF_A1185 PF00480 ROK family VF_A1187 PF00375 Sodium:dicarboxylate symporter family VF_B0004 PF02096 60Kd inner membrane protein VF_B0004 PF14849 YidC periplasmic domain VF_B0020 PF01751 Toprim domain VF_B0028 PF02092 VF_B0028 VF_B0052 PF06968 Biotin and Thiamin Synthesis associated domain