VF_0006 SM00382 ATPases associated with a variety of cellular activities VF_0008 SM00062 Bacterial periplasmic substrate-binding proteins VF_0008 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VF_0009 SM00382 ATPases associated with a variety of cellular activities VF_0009 SM00760 Bacterial dnaA protein helix-turn-helix domain VF_0010 SM00480 DNA polymerase III beta subunit VF_0012 SM00387 Histidine kinase-like ATPases VF_0012 SM00433 TopoisomeraseII VF_0016 SM00836 DALR anticodon binding domain VF_0017 SM00642 Alpha-amylase domain VF_0023 SM00829 Enoylreductase VF_0036 SM00876 Biotin and Thiamin Synthesis associated domain VF_0053 SM01004 Delta-aminolevulinic acid dehydratase VF_0056 SM00487 DEAD-like helicases superfamily VF_0056 SM00490 helicase superfamily c-terminal domain VF_0058 SM00357 Cold shock protein domain VF_0058 SM00382 ATPases associated with a variety of cellular activities VF_0058 SM00959 Rho termination factor, N-terminal domain VF_0070 SM00341 Helicase and RNase D C-terminal VF_0070 SM00487 DEAD-like helicases superfamily VF_0070 SM00490 helicase superfamily c-terminal domain VF_0070 SM00956 VF_0070 VF_0074 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VF_0074 SM00474 3'-5' exonuclease VF_0074 SM00475 5'-3' exonuclease VF_0074 SM00482 DNA polymerase A domain VF_0080 SM00729 Elongator protein 3, MiaB family, Radical SAM VF_0081 SM00344 helix_turn_helix ASNC type VF_0087 SM00052 Putative diguanylate phosphodiesterase VF_0087 SM00897 FIST N domain VF_0087 SM01204 VF_0087 VF_0088 SM01144 VF_0088 VF_0091 SM00052 Putative diguanylate phosphodiesterase VF_0091 SM00267 diguanylate cyclase VF_0091 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_0094 SM00052 Putative diguanylate phosphodiesterase VF_0094 SM00267 diguanylate cyclase VF_0095 SM00382 ATPases associated with a variety of cellular activities VF_0095 SM00448 cheY-homologous receiver domain VF_0096 SM00091 PAS domain VF_0096 SM00387 Histidine kinase-like ATPases VF_0096 SM00388 His Kinase A (phosphoacceptor) domain VF_0098 SM01230 VF_0098 VF_0104 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VF_0104 SM00954 Region found in RelA / SpoT proteins VF_0105 SM01409 VF_0105 VF_0106 SM00072 Guanylate kinase homologues. VF_0114 SM00448 cheY-homologous receiver domain VF_0114 SM00862 Transcriptional regulatory protein, C terminal VF_0115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_0115 SM00387 Histidine kinase-like ATPases VF_0115 SM00388 His Kinase A (phosphoacceptor) domain VF_0120 SM00316 Ribosomal protein S1-like RNA-binding domain VF_0120 SM00732 Likely ribonuclease with RNase H fold. VF_0130 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VF_0130 SM01232 VF_0130 VF_0153 SM00849 Metallo-beta-lactamase superfamily VF_0153 SM01027 Beta-Casp domain VF_0164 SM00226 Low molecular weight phosphatase family VF_0204 SM00883 Chaperonin 10 Kd subunit VF_0218 SM00382 ATPases associated with a variety of cellular activities VF_0225 SM00320 WD40 repeats VF_0232 SM00838 Elongation factor G C-terminus VF_0232 SM00889 Elongation factor G, domain IV VF_0234 SM01403 VF_0234 VF_0239 SM01382 VF_0239 VF_0239 SM01383 VF_0239 VF_0242 SM00322 K homology RNA-binding domain VF_0246 SM01374 VF_0246 VF_0248 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VF_0261 SM00363 S4 RNA-binding domain VF_0261 SM01390 VF_0261 VF_0262 SM00662 RNA polymerases D VF_0269 SM00382 ATPases associated with a variety of cellular activities VF_0270 SM00487 DEAD-like helicases superfamily VF_0270 SM00490 helicase superfamily c-terminal domain VF_0286 SM00650 Ribosomal RNA adenine dimethylases VF_0290 SM00271 DnaJ molecular chaperone homology domain VF_0294 SM01329 VF_0294 VF_0295 SM00917 LeuA allosteric (dimerisation) domain VF_0302 SM01005 Alanine racemase, C-terminal domain VF_0327 SM00382 ATPases associated with a variety of cellular activities VF_0337 SM01018 B12 binding domain VF_0355 SM00052 Putative diguanylate phosphodiesterase VF_0355 SM00267 diguanylate cyclase VF_0359 SM00965 Secretin and TonB N terminus short domain VF_0361 SM00028 Tetratricopeptide repeats VF_0362 SM00382 ATPases associated with a variety of cellular activities VF_0376 SM00316 Ribosomal protein S1-like RNA-binding domain VF_0382 SM00924 MgtE intracellular N domain VF_0388 SM00382 ATPases associated with a variety of cellular activities VF_0392 SM00116 Domain in cystathionine beta-synthase and other proteins. VF_0394 SM00382 ATPases associated with a variety of cellular activities VF_0402 SM00563 Phosphate acyltransferases VF_0422 SM00478 endonuclease III VF_0422 SM00525 VF_0422 VF_0424 SM00729 Elongator protein 3, MiaB family, Radical SAM VF_0427 SM01152 VF_0427 VF_0431 SM00382 ATPases associated with a variety of cellular activities VF_0433 SM00732 Likely ribonuclease with RNase H fold. VF_0438 SM00731 SprT homologues. VF_0440 SM00861 Transketolase, pyrimidine binding domain VF_0441 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VF_0444 SM00487 DEAD-like helicases superfamily VF_0444 SM00490 helicase superfamily c-terminal domain VF_0454 SM00382 ATPases associated with a variety of cellular activities VF_0455 SM00927 DNA mismatch repair enzyme MutH VF_0457 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VF_0463 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VF_0466 SM00904 Riboflavin kinase VF_0472 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VF_0473 SM00851 MGS-like domain VF_0473 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VF_0477 SM01103 VF_0477 VF_0479 SM00382 ATPases associated with a variety of cellular activities VF_0485 SM00316 Ribosomal protein S1-like RNA-binding domain VF_0489 SM01387 VF_0489 VF_0490 SM00316 Ribosomal protein S1-like RNA-binding domain VF_0490 SM00322 K homology RNA-binding domain VF_0491 SM00028 Tetratricopeptide repeats VF_0494 SM00052 Putative diguanylate phosphodiesterase VF_0494 SM00091 PAS domain VF_0494 SM00267 diguanylate cyclase VF_0504 SM01133 VF_0504 VF_0505 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VF_0516 SM00382 ATPases associated with a variety of cellular activities VF_0519 SM00028 Tetratricopeptide repeats VF_0524 SM00387 Histidine kinase-like ATPases VF_0525 SM00387 Histidine kinase-like ATPases VF_0526 SM00448 cheY-homologous receiver domain VF_0526 SM00862 Transcriptional regulatory protein, C terminal VF_0528 SM00382 ATPases associated with a variety of cellular activities VF_0529 SM00838 Elongation factor G C-terminus VF_0529 SM00889 Elongation factor G, domain IV VF_0534 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VF_0534 SM00534 ATPase domain of DNA mismatch repair MUTS family VF_0535 SM00382 ATPases associated with a variety of cellular activities VF_0536 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VF_0546 SM01091 Transporter associated domain VF_0548 SM00382 ATPases associated with a variety of cellular activities VF_0548 SM00962 SRP54-type protein, GTPase domain VF_0548 SM00963 SRP54-type protein, helical bundle domain VF_0554 SM00830 Chorismate mutase type II VF_0557 SM00382 ATPases associated with a variety of cellular activities VF_0561 SM00830 Chorismate mutase type II VF_0564 SM00363 S4 RNA-binding domain VF_0566 SM00382 ATPases associated with a variety of cellular activities VF_0566 SM01086 C-terminal, D2-small domain, of ClpB protein VF_0587 SM00925 MltA specific insert domain VF_0594 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VF_0594 SM00475 5'-3' exonuclease VF_0596 SM00267 diguanylate cyclase VF_0597 SM00028 Tetratricopeptide repeats VF_0608 SM00354 helix_turn _helix lactose operon repressor VF_0620 SM00271 DnaJ molecular chaperone homology domain VF_0625 SM00562 VF_0625 VF_0627 SM00028 Tetratricopeptide repeats VF_0632 SM00564 beta-propeller repeat VF_0637 SM00116 Domain in cystathionine beta-synthase and other proteins. VF_0637 SM01240 VF_0637 VF_0645 SM00829 Enoylreductase VF_0648 SM00829 Enoylreductase VF_0651 SM00062 Bacterial periplasmic substrate-binding proteins VF_0652 SM01211 VF_0652 VF_0655 SM00495 Chitin-binding domain type 3 VF_0655 SM00636 VF_0655 VF_0663 SM01130 VF_0663 VF_0672 SM00988 UreE urease accessory protein, N-terminal domain VF_0677 SM00382 ATPases associated with a variety of cellular activities VF_0678 SM00382 ATPases associated with a variety of cellular activities VF_0686 SM00382 ATPases associated with a variety of cellular activities VF_0686 SM00930 VF_0686 VF_0691 SM00382 ATPases associated with a variety of cellular activities VF_0692 SM00382 ATPases associated with a variety of cellular activities VF_0696 SM01276 VF_0696 VF_0698 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_0708 SM00387 Histidine kinase-like ATPases VF_0708 SM00388 His Kinase A (phosphoacceptor) domain VF_0708 SM00448 cheY-homologous receiver domain VF_0711 SM00861 Transketolase, pyrimidine binding domain VF_0716 SM00981 VF_0716 VF_0727 SM00900 VF_0727 VF_0735 SM01005 Alanine racemase, C-terminal domain VF_0740 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VF_0742 SM00729 Elongator protein 3, MiaB family, Radical SAM VF_0745 SM00936 Penicillin-binding protein 5, C-terminal domain VF_0756 SM00116 Domain in cystathionine beta-synthase and other proteins. VF_0756 SM01091 Transporter associated domain VF_0759 SM00729 Elongator protein 3, MiaB family, Radical SAM VF_0764 SM01400 VF_0764 VF_0768 SM00937 VF_0768 VF_0777 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_0777 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_0779 SM00463 Small MutS-related domain VF_0782 SM00422 helix_turn_helix, mercury resistance VF_0787 SM00382 ATPases associated with a variety of cellular activities VF_0791 SM00862 Transcriptional regulatory protein, C terminal VF_0792 SM00387 Histidine kinase-like ATPases VF_0797 SM00382 ATPases associated with a variety of cellular activities VF_0797 SM00994 ClpX C4-type zinc finger VF_0797 SM01086 C-terminal, D2-small domain, of ClpB protein VF_0798 SM00382 ATPases associated with a variety of cellular activities VF_0798 SM00464 Found in ATP-dependent protease La (LON) VF_0799 SM00411 bacterial (prokaryotic) histone like domain VF_0803 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VF_0823 SM00861 Transketolase, pyrimidine binding domain VF_0826 SM00881 CoA binding domain VF_0827 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_0827 SM01049 VF_0827 VF_0829 SM00382 ATPases associated with a variety of cellular activities VF_0832 SM00342 helix_turn_helix, arabinose operon control protein VF_0833 SM00899 VF_0833 VF_0839 SM00836 DALR anticodon binding domain VF_0839 SM01016 Arginyl tRNA synthetase N terminal dom VF_0845 SM00563 Phosphate acyltransferases VF_0857 SM00825 Beta-ketoacyl synthase VF_0859 SM00822 VF_0859 VF_0860 SM00825 Beta-ketoacyl synthase VF_0864 SM00487 DEAD-like helicases superfamily VF_0864 SM00490 helicase superfamily c-terminal domain VF_0865 SM00155 Phospholipase D. Active site motifs. VF_0872 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_0880 SM00363 S4 RNA-binding domain VF_0884 SM00382 ATPases associated with a variety of cellular activities VF_0900 SM00382 ATPases associated with a variety of cellular activities VF_0901 SM00382 ATPases associated with a variety of cellular activities VF_0903 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VF_0903 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VF_0904 SM00344 helix_turn_helix ASNC type VF_0905 SM00843 VF_0905 VF_0907 SM00382 ATPases associated with a variety of cellular activities VF_0913 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VF_0923 SM00448 cheY-homologous receiver domain VF_0925 SM00479 VF_0925 VF_0929 SM00478 endonuclease III VF_0929 SM00525 VF_0929 VF_0931 SM00900 VF_0931 VF_0936 SM00487 DEAD-like helicases superfamily VF_0936 SM00490 helicase superfamily c-terminal domain VF_0937 SM00382 ATPases associated with a variety of cellular activities VF_0937 SM00448 cheY-homologous receiver domain VF_0940 SM00729 Elongator protein 3, MiaB family, Radical SAM VF_0951 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VF_0952 SM00382 ATPases associated with a variety of cellular activities VF_0964 SM00028 Tetratricopeptide repeats VF_0974 SM00382 ATPases associated with a variety of cellular activities VF_0975 SM00382 ATPases associated with a variety of cellular activities VF_0978 SM00829 Enoylreductase VF_0985 SM00052 Putative diguanylate phosphodiesterase VF_0985 SM00267 diguanylate cyclase VF_0985 SM01049 VF_0985 VF_0986 SM00495 Chitin-binding domain type 3 VF_0986 SM00636 VF_0986 VF_0987 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_0989 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VF_0989 SM00091 PAS domain VF_0989 SM00267 diguanylate cyclase VF_0990 SM00220 Serine/Threonine protein kinases, catalytic domain VF_0991 SM00331 Sigma factor PP2C-like phosphatases VF_0991 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain VF_0997 SM00240 Forkhead associated domain VF_0998 SM00382 ATPases associated with a variety of cellular activities VF_0999 SM00382 ATPases associated with a variety of cellular activities VF_0999 SM01086 C-terminal, D2-small domain, of ClpB protein VF_1009 SM00487 DEAD-like helicases superfamily VF_1009 SM00491 VF_1009 VF_1034 SM00481 DNA polymerase alpha chain like domain VF_1036 SM00387 Histidine kinase-like ATPases VF_1036 SM00448 cheY-homologous receiver domain VF_1038 SM00363 S4 RNA-binding domain VF_1039 SM00822 VF_1039 VF_1051 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VF_1051 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VF_1051 SM00493 VF_1051 VF_1053 SM00100 Cyclic nucleotide-monophosphate binding domain VF_1053 SM00387 Histidine kinase-like ATPases VF_1054 SM00448 cheY-homologous receiver domain VF_1059 SM00495 Chitin-binding domain type 3 VF_1062 SM00788 Adenylosuccinate synthetase VF_1074 SM00342 helix_turn_helix, arabinose operon control protein VF_1086 SM00862 Transcriptional regulatory protein, C terminal VF_1091 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_1092 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_1093 SM00062 Bacterial periplasmic substrate-binding proteins VF_1101 SM00507 HNH nucleases VF_1107 SM00382 ATPases associated with a variety of cellular activities VF_1108 SM00271 DnaJ molecular chaperone homology domain VF_1116 SM00862 Transcriptional regulatory protein, C terminal VF_1117 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_1118 SM01322 VF_1118 VF_1129 SM00587 ZnF_C4 abd HLH domain containing kinases domain VF_1132 SM00642 Alpha-amylase domain VF_1133 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_1133 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_1138 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_1144 SM00487 DEAD-like helicases superfamily VF_1144 SM00490 helicase superfamily c-terminal domain VF_1146 SM00495 Chitin-binding domain type 3 VF_1148 SM00448 cheY-homologous receiver domain VF_1148 SM00850 LytTr DNA-binding domain VF_1149 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VF_1165 SM00382 ATPases associated with a variety of cellular activities VF_1194 SM00849 Metallo-beta-lactamase superfamily VF_1198 SM00852 Probable molybdopterin binding domain VF_1200 SM00028 Tetratricopeptide repeats VF_1200 SM00267 diguanylate cyclase VF_1204 SM00434 DNA Topoisomerase IV VF_1206 SM00014 Acid phosphatase homologues VF_1208 SM01022 VF_1208 VF_1214 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VF_1220 SM00382 ATPases associated with a variety of cellular activities VF_1226 SM00729 Elongator protein 3, MiaB family, Radical SAM VF_1236 SM00873 B3/4 domain VF_1236 SM00874 tRNA synthetase B5 domain VF_1236 SM00896 Ferredoxin-fold anticodon binding domain VF_1237 SM00411 bacterial (prokaryotic) histone like domain VF_1244 SM00316 Ribosomal protein S1-like RNA-binding domain VF_1245 SM00267 diguanylate cyclase VF_1247 SM00257 Lysin motif VF_1255 SM00354 helix_turn _helix lactose operon repressor VF_1270 SM00062 Bacterial periplasmic substrate-binding proteins VF_1272 SM00841 Elongation factor P, C-terminal VF_1272 SM01185 VF_1272 VF_1277 SM00382 ATPases associated with a variety of cellular activities VF_1279 SM00945 ProQ/FINO family VF_1280 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VF_1280 SM00245 tail specific protease VF_1287 SM00981 VF_1287 VF_1289 SM00382 ATPases associated with a variety of cellular activities VF_1296 SM00387 Histidine kinase-like ATPases VF_1296 SM00388 His Kinase A (phosphoacceptor) domain VF_1296 SM00448 cheY-homologous receiver domain VF_1297 SM00897 FIST N domain VF_1297 SM01204 VF_1297 VF_1308 SM00100 Cyclic nucleotide-monophosphate binding domain VF_1308 SM00419 helix_turn_helix, cAMP Regulatory protein VF_1313 SM00047 Lysozyme subfamily 2 VF_1315 SM00382 ATPases associated with a variety of cellular activities VF_1330 SM00495 Chitin-binding domain type 3 VF_1335 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VF_1337 SM01266 VF_1337 VF_1350 SM00028 Tetratricopeptide repeats VF_1350 SM00267 diguanylate cyclase VF_1360 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VF_1367 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VF_1369 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_1369 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_1374 SM00797 Allophanate hydrolase subunit 2 VF_1375 SM00796 Allophanate hydrolase subunit 1 VF_1387 SM00450 Rhodanese Homology Domain VF_1390 SM00495 Chitin-binding domain type 3 VF_1396 SM00448 cheY-homologous receiver domain VF_1396 SM00862 Transcriptional regulatory protein, C terminal VF_1397 SM00387 Histidine kinase-like ATPases VF_1400 SM00387 Histidine kinase-like ATPases VF_1400 SM00388 His Kinase A (phosphoacceptor) domain VF_1401 SM00382 ATPases associated with a variety of cellular activities VF_1401 SM00448 cheY-homologous receiver domain VF_1404 SM00382 ATPases associated with a variety of cellular activities VF_1406 SM00852 Probable molybdopterin binding domain VF_1409 SM01144 VF_1409 VF_1416 SM00028 Tetratricopeptide repeats VF_1421 SM00327 von Willebrand factor (vWF) type A domain VF_1422 SM00327 von Willebrand factor (vWF) type A domain VF_1426 SM00028 Tetratricopeptide repeats VF_1439 SM00487 DEAD-like helicases superfamily VF_1439 SM00490 helicase superfamily c-terminal domain VF_1443 SM00530 Helix-turn-helix XRE-family like proteins VF_1445 SM00382 ATPases associated with a variety of cellular activities VF_1449 SM00354 helix_turn _helix lactose operon repressor VF_1469 SM00530 Helix-turn-helix XRE-family like proteins VF_1477 SM00271 DnaJ molecular chaperone homology domain VF_1477 SM00671 Sel1-like repeats. VF_1480 SM00867 YceI-like domain VF_1482 SM00479 VF_1482 VF_1500 SM00382 ATPases associated with a variety of cellular activities VF_1500 SM00487 DEAD-like helicases superfamily VF_1500 SM00490 helicase superfamily c-terminal domain VF_1500 SM00847 Helicase associated domain (HA2) Add an annotation VF_1503 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_1504 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_1505 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VF_1514 SM00479 VF_1514 VF_1515 SM00267 diguanylate cyclase VF_1515 SM01079 VF_1515 VF_1523 SM00116 Domain in cystathionine beta-synthase and other proteins. VF_1527 SM00870 VF_1527 VF_1530 SM00345 helix_turn_helix gluconate operon transcriptional repressor VF_1530 SM00866 VF_1530 VF_1532 SM00062 Bacterial periplasmic substrate-binding proteins VF_1535 SM00382 ATPases associated with a variety of cellular activities VF_1537 SM00671 Sel1-like repeats. VF_1540 SM00028 Tetratricopeptide repeats VF_1540 SM00671 Sel1-like repeats. VF_1541 SM00014 Acid phosphatase homologues VF_1544 SM00014 Acid phosphatase homologues VF_1557 SM00487 DEAD-like helicases superfamily VF_1557 SM00490 helicase superfamily c-terminal domain VF_1557 SM00847 Helicase associated domain (HA2) Add an annotation VF_1558 SM00919 Malic enzyme, NAD binding domain VF_1558 SM01274 VF_1558 VF_1561 SM00267 diguanylate cyclase VF_1565 SM00382 ATPases associated with a variety of cellular activities VF_1568 SM00363 S4 RNA-binding domain VF_1570 SM00448 cheY-homologous receiver domain VF_1570 SM00862 Transcriptional regulatory protein, C terminal VF_1572 SM00354 helix_turn _helix lactose operon repressor VF_1578 SM00344 helix_turn_helix ASNC type VF_1587 SM00062 Bacterial periplasmic substrate-binding proteins VF_1587 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VF_1588 SM00382 ATPases associated with a variety of cellular activities VF_1592 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. VF_1593 SM00382 ATPases associated with a variety of cellular activities VF_1594 SM00382 ATPases associated with a variety of cellular activities VF_1598 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VF_1598 SM00495 Chitin-binding domain type 3 VF_1598 SM00636 VF_1598 VF_1600 SM00840 VF_1600 VF_1603 SM00052 Putative diguanylate phosphodiesterase VF_1606 SM00155 Phospholipase D. Active site motifs. VF_1608 SM00852 Probable molybdopterin binding domain VF_1613 SM00382 ATPases associated with a variety of cellular activities VF_1618 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_1618 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_1619 SM00073 Histidine Phosphotransfer domain VF_1619 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_1619 SM00387 Histidine kinase-like ATPases VF_1619 SM00388 His Kinase A (phosphoacceptor) domain VF_1619 SM00448 cheY-homologous receiver domain VF_1621 SM00851 MGS-like domain VF_1626 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VF_1626 SM00465 GIY-YIG type nucleases (URI domain) VF_1627 SM00421 helix_turn_helix, Lux Regulon VF_1627 SM00448 cheY-homologous receiver domain VF_1628 SM00486 DNA polymerase type-B family VF_1631 SM00528 Domain in histone-like proteins of HNS family VF_1633 SM00345 helix_turn_helix gluconate operon transcriptional repressor VF_1639 SM00267 diguanylate cyclase VF_1641 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VF_1641 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VF_1641 SM00493 VF_1641 VF_1644 SM00870 VF_1644 VF_1645 SM00859 Semialdehyde dehydrogenase, NAD binding domain VF_1651 SM01057 Eukaryotic-type carbonic anhydrase VF_1652 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_1663 SM00978 VF_1663 VF_1665 SM00563 Phosphate acyltransferases VF_1667 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VF_1677 SM00342 helix_turn_helix, arabinose operon control protein VF_1682 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VF_1683 SM01144 VF_1683 VF_1685 SM00493 VF_1685 VF_1687 SM00382 ATPases associated with a variety of cellular activities VF_1689 SM00448 cheY-homologous receiver domain VF_1698 SM00859 Semialdehyde dehydrogenase, NAD binding domain VF_1700 SM00825 Beta-ketoacyl synthase VF_1707 SM00474 3'-5' exonuclease VF_1713 SM00487 DEAD-like helicases superfamily VF_1713 SM00491 VF_1713 VF_1716 SM00342 helix_turn_helix, arabinose operon control protein VF_1720 SM00354 helix_turn _helix lactose operon repressor VF_1726 SM00729 Elongator protein 3, MiaB family, Radical SAM VF_1738 SM00825 Beta-ketoacyl synthase VF_1740 SM00822 VF_1740 VF_1741 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VF_1747 SM00363 S4 RNA-binding domain VF_1748 SM00316 Ribosomal protein S1-like RNA-binding domain VF_1755 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VF_1756 SM00028 Tetratricopeptide repeats VF_1758 SM00411 bacterial (prokaryotic) histone like domain VF_1759 SM00316 Ribosomal protein S1-like RNA-binding domain VF_1764 SM00316 Ribosomal protein S1-like RNA-binding domain VF_1765 SM00382 ATPases associated with a variety of cellular activities VF_1765 SM01086 C-terminal, D2-small domain, of ClpB protein VF_1767 SM00357 Cold shock protein domain VF_1771 SM00763 PrkA AAA domain VF_1778 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_1778 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_1782 SM00849 Metallo-beta-lactamase superfamily VF_1783 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VF_1783 SM00382 ATPases associated with a variety of cellular activities VF_1787 SM00342 helix_turn_helix, arabinose operon control protein VF_1789 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_1789 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_1790 SM00487 DEAD-like helicases superfamily VF_1790 SM00490 helicase superfamily c-terminal domain VF_1807 SM00463 Small MutS-related domain VF_1808 SM00855 Phosphoglycerate mutase family VF_1824 SM00382 ATPases associated with a variety of cellular activities VF_1826 SM00260 Two component signalling adaptor domain VF_1828 SM00260 Two component signalling adaptor domain VF_1830 SM00448 cheY-homologous receiver domain VF_1831 SM00073 Histidine Phosphotransfer domain VF_1831 SM00260 Two component signalling adaptor domain VF_1831 SM00387 Histidine kinase-like ATPases VF_1831 SM01231 VF_1831 VF_1833 SM00448 cheY-homologous receiver domain VF_1836 SM00382 ATPases associated with a variety of cellular activities VF_1836 SM00962 SRP54-type protein, GTPase domain VF_1849 SM00382 ATPases associated with a variety of cellular activities VF_1854 SM00382 ATPases associated with a variety of cellular activities VF_1854 SM00448 cheY-homologous receiver domain VF_1855 SM00091 PAS domain VF_1855 SM00387 Histidine kinase-like ATPases VF_1855 SM00388 His Kinase A (phosphoacceptor) domain VF_1856 SM00382 ATPases associated with a variety of cellular activities VF_1869 SM00047 Lysozyme subfamily 2 VF_1878 SM00138 Methyltransferase, chemotaxis proteins VF_1879 SM00260 Two component signalling adaptor domain VF_1879 SM00448 cheY-homologous receiver domain VF_1880 SM00858 VF_1880 VF_1886 SM00028 Tetratricopeptide repeats VF_1890 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VF_1890 SM00292 breast cancer carboxy-terminal domain VF_1890 SM00532 Ligase N family VF_1891 SM00771 ZipA, C-terminal domain (FtsZ-binding) VF_1905 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VF_1908 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_1908 SM00387 Histidine kinase-like ATPases VF_1909 SM00421 helix_turn_helix, Lux Regulon VF_1909 SM00448 cheY-homologous receiver domain VF_1918 SM01130 VF_1918 VF_1935 SM00479 VF_1935 VF_1938 SM00849 Metallo-beta-lactamase superfamily VF_1939 SM00257 Lysin motif VF_1942 SM00938 Nitrogen regulatory protein P-II VF_1945 SM00977 TilS substrate C-terminal domain VF_1947 SM00481 DNA polymerase alpha chain like domain VF_1953 SM00935 Outer membrane protein (OmpH-like) VF_1955 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VF_1964 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VF_1968 SM01323 VF_1968 VF_1971 SM00116 Domain in cystathionine beta-synthase and other proteins. VF_1983 SM00382 ATPases associated with a variety of cellular activities VF_1987 SM00091 PAS domain VF_1987 SM00387 Histidine kinase-like ATPases VF_1987 SM00388 His Kinase A (phosphoacceptor) domain VF_1988 SM00448 cheY-homologous receiver domain VF_1988 SM00862 Transcriptional regulatory protein, C terminal VF_1993 SM00271 DnaJ molecular chaperone homology domain VF_2003 SM01040 BRO family, N-terminal domain VF_2037 SM00530 Helix-turn-helix XRE-family like proteins VF_2042 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_2042 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_2046 SM00382 ATPases associated with a variety of cellular activities VF_2049 SM00642 Alpha-amylase domain VF_2055 SM01235 VF_2055 VF_2060 SM00862 Transcriptional regulatory protein, C terminal VF_2068 SM00257 Lysin motif VF_2075 SM01192 VF_2075 VF_2075 SM01193 VF_2075 VF_2080 SM00954 Region found in RelA / SpoT proteins VF_2082 SM00073 Histidine Phosphotransfer domain VF_2082 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_2082 SM00387 Histidine kinase-like ATPases VF_2082 SM00388 His Kinase A (phosphoacceptor) domain VF_2082 SM00448 cheY-homologous receiver domain VF_2087 SM00358 Double-stranded RNA binding motif VF_2087 SM00535 Ribonuclease III family VF_2089 SM00838 Elongation factor G C-terminus VF_2113 SM00986 Uracil DNA glycosylase superfamily VF_2113 SM00987 UreE urease accessory protein, C-terminal domain VF_2114 SM00518 AP endonuclease family 2 VF_2120 SM00448 cheY-homologous receiver domain VF_2120 SM00862 Transcriptional regulatory protein, C terminal VF_2122 SM00073 Histidine Phosphotransfer domain VF_2122 SM00091 PAS domain VF_2122 SM00387 Histidine kinase-like ATPases VF_2122 SM00388 His Kinase A (phosphoacceptor) domain VF_2122 SM00448 cheY-homologous receiver domain VF_2123 SM00729 Elongator protein 3, MiaB family, Radical SAM VF_2138 SM00091 PAS domain VF_2138 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_2138 SM00387 Histidine kinase-like ATPases VF_2138 SM00388 His Kinase A (phosphoacceptor) domain VF_2138 SM00448 cheY-homologous receiver domain VF_2142 SM00382 ATPases associated with a variety of cellular activities VF_2143 SM00382 ATPases associated with a variety of cellular activities VF_2147 SM01068 Putative carbohydrate binding domain VF_2149 SM00382 ATPases associated with a variety of cellular activities VF_2153 SM00938 Nitrogen regulatory protein P-II VF_2161 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_2161 SM01049 VF_2161 VF_2163 SM00487 DEAD-like helicases superfamily VF_2163 SM00490 helicase superfamily c-terminal domain VF_2163 SM00847 Helicase associated domain (HA2) Add an annotation VF_2172 SM00382 ATPases associated with a variety of cellular activities VF_2174 SM00947 Carbonic anhydrase VF_2182 SM00345 helix_turn_helix gluconate operon transcriptional repressor VF_2182 SM00895 VF_2182 VF_2183 SM00644 VF_2183 VF_2193 SM00957 SecA DEAD-like domain VF_2193 SM00958 SecA preprotein cross-linking domain VF_2196 SM00864 Tubulin/FtsZ family, GTPase domain VF_2196 SM00865 Tubulin/FtsZ family, C-terminal domain VF_2197 SM00842 Cell division protein FtsA VF_2225 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VF_2226 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VF_2227 SM00434 DNA Topoisomerase IV VF_2228 SM00387 Histidine kinase-like ATPases VF_2228 SM00433 TopoisomeraseII VF_2236 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_2236 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_2238 SM00880 VF_2238 VF_2238 SM01118 VF_2238 VF_2241 SM00287 Bacterial SH3 domain homologues VF_2247 SM00905 Dihydroneopterin aldolase VF_2248 SM01207 VF_2248 VF_2252 SM00400 zinc finger VF_2252 SM00493 VF_2252 VF_2252 SM00766 DNA primase DnaG DnaB-binding VF_2259 SM00345 helix_turn_helix gluconate operon transcriptional repressor VF_2261 SM00091 PAS domain VF_2261 SM00267 diguanylate cyclase VF_2269 SM00642 Alpha-amylase domain VF_2272 SM00919 Malic enzyme, NAD binding domain VF_2272 SM01274 VF_2272 VF_2274 SM00487 DEAD-like helicases superfamily VF_2274 SM00490 helicase superfamily c-terminal domain VF_2275 SM00354 helix_turn _helix lactose operon repressor VF_2278 SM00382 ATPases associated with a variety of cellular activities VF_2278 SM01086 C-terminal, D2-small domain, of ClpB protein VF_2280 SM00100 Cyclic nucleotide-monophosphate binding domain VF_2280 SM00419 helix_turn_helix, cAMP Regulatory protein VF_2281 SM01150 VF_2281 VF_2293 SM00965 Secretin and TonB N terminus short domain VF_2306 SM00859 Semialdehyde dehydrogenase, NAD binding domain VF_2313 SM00967 RNA 2'-O ribose methyltransferase substrate binding VF_2314 SM00316 Ribosomal protein S1-like RNA-binding domain VF_2314 SM00357 Cold shock protein domain VF_2314 SM00955 VF_2314 VF_2317 SM00671 Sel1-like repeats. VF_2318 SM00788 Adenylosuccinate synthetase VF_2320 SM00244 prohibitin homologues VF_2321 SM00244 prohibitin homologues VF_2325 SM00853 MutL C terminal dimerisation domain VF_2325 SM01340 VF_2325 VF_2326 SM00257 Lysin motif VF_2326 SM00646 VF_2326 VF_2329 SM00479 VF_2329 VF_2338 SM00841 Elongation factor P, C-terminal VF_2338 SM01185 VF_2338 VF_2343 SM00448 cheY-homologous receiver domain VF_2343 SM00862 Transcriptional regulatory protein, C terminal VF_2344 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_2344 SM00387 Histidine kinase-like ATPases VF_2344 SM00388 His Kinase A (phosphoacceptor) domain VF_2347 SM00971 Serine acetyltransferase, N-terminal VF_2350 SM00450 Rhodanese Homology Domain VF_2360 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VF_2361 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VF_2362 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VF_2362 SM00267 diguanylate cyclase VF_2367 SM00382 ATPases associated with a variety of cellular activities VF_2373 SM00420 helix_turn_helix, Deoxyribose operon repressor VF_2373 SM01134 VF_2373 VF_2374 SM00421 helix_turn_helix, Lux Regulon VF_2374 SM00448 cheY-homologous receiver domain VF_2379 SM00387 Histidine kinase-like ATPases VF_2379 SM00388 His Kinase A (phosphoacceptor) domain VF_2379 SM00448 cheY-homologous receiver domain VF_2381 SM00100 Cyclic nucleotide-monophosphate binding domain VF_2381 SM00116 Domain in cystathionine beta-synthase and other proteins. VF_2382 SM00479 VF_2382 VF_2387 SM00878 Biotin carboxylase C-terminal domain VF_2393 SM00422 helix_turn_helix, mercury resistance VF_2394 SM00798 AICARFT/IMPCHase bienzyme VF_2394 SM00851 MGS-like domain VF_2395 SM01209 VF_2395 VF_2395 SM01210 VF_2395 VF_2397 SM00411 bacterial (prokaryotic) histone like domain VF_2408 SM00421 helix_turn_helix, Lux Regulon VF_2412 SM00663 RNA polymerase I subunit A N-terminus VF_2419 SM00649 Ribosomal protein L11/L12 VF_2421 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VF_2421 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VF_2428 SM00155 Phospholipase D. Active site motifs. VF_2443 SM00563 Phosphate acyltransferases VF_2448 SM00450 Rhodanese Homology Domain VF_2452 SM00382 ATPases associated with a variety of cellular activities VF_2453 SM00382 ATPases associated with a variety of cellular activities VF_2453 SM00962 SRP54-type protein, GTPase domain VF_2453 SM00963 SRP54-type protein, helical bundle domain VF_2460 SM00487 DEAD-like helicases superfamily VF_2460 SM00490 helicase superfamily c-terminal domain VF_2473 SM00382 ATPases associated with a variety of cellular activities VF_2476 SM00363 S4 RNA-binding domain VF_2486 SM01219 VF_2486 VF_2496 SM00220 Serine/Threonine protein kinases, catalytic domain VF_2513 SM00100 Cyclic nucleotide-monophosphate binding domain VF_2513 SM00116 Domain in cystathionine beta-synthase and other proteins. VF_2514 SM00479 VF_2514 VF_2519 SM00382 ATPases associated with a variety of cellular activities VF_2537 SM01001 AIR carboxylase VF_2542 SM00257 Lysin motif VF_2554 SM00563 Phosphate acyltransferases VF_2555 SM00382 ATPases associated with a variety of cellular activities VF_2561 SM00357 Cold shock protein domain VF_2564 SM00382 ATPases associated with a variety of cellular activities VF_2572 SM00470 ParB-like nuclease domain VF_2575 SM01228 VF_2575 VF_A0094 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_A0443 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VF_A0538 SM00382 ATPases associated with a variety of cellular activities VF_A0751 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_A0751 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VF_A0838 SM00825 Beta-ketoacyl synthase VF_A0982 SM00382 ATPases associated with a variety of cellular activities VF_A1027 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VF_A1035 SM00495 Chitin-binding domain type 3 VF_A1069 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VF_B0052 SM00876 Biotin and Thiamin Synthesis associated domain