AL536_RS00020	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS00020	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS00025	SM00344	helix_turn_helix ASNC type
AL536_RS00040	SM00487	DEAD-like helicases superfamily
AL536_RS00040	SM00490	helicase superfamily c-terminal domain
AL536_RS00060	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL536_RS00065	SM00422	helix_turn_helix, mercury resistance
AL536_RS00070	SM00360	RNA recognition motif
AL536_RS00080	SM00344	helix_turn_helix ASNC type
AL536_RS00095	SM01007	Class II Aldolase and Adducin N-terminal domain
AL536_RS00110	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL536_RS00110	SM01134	AL536_RS00110
AL536_RS00115	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL536_RS00115	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS00140	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS00150	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS00155	SM00450	Rhodanese Homology Domain
AL536_RS00190	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL536_RS00215	SM00507	HNH nucleases
AL536_RS00220	SM00829	Enoylreductase
AL536_RS00225	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL536_RS00230	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS00280	SM00062	Bacterial periplasmic substrate-binding proteins
AL536_RS00290	SM00479	AL536_RS00290
AL536_RS00415	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS00415	SM01009	AlkA N-terminal domain
AL536_RS00455	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS00480	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL536_RS00495	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL536_RS00515	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS00605	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL536_RS00605	SM00267	diguanylate cyclase
AL536_RS00625	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS00645	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL536_RS00705	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS00735	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS00770	SM00382	ATPases associated with a variety of cellular activities
AL536_RS00785	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS00785	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS00830	SM00267	diguanylate cyclase
AL536_RS00855	SM00267	diguanylate cyclase
AL536_RS00855	SM01079	AL536_RS00855
AL536_RS00875	SM00267	diguanylate cyclase
AL536_RS00885	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL536_RS00895	SM00260	Two component signalling adaptor domain
AL536_RS00895	SM00448	cheY-homologous receiver domain
AL536_RS00930	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS00935	SM00917	LeuA allosteric (dimerisation) domain
AL536_RS00955	SM00344	helix_turn_helix ASNC type
AL536_RS00960	SM00421	helix_turn_helix, Lux Regulon
AL536_RS00995	SM00382	ATPases associated with a variety of cellular activities
AL536_RS01060	SM00346	helix_turn_helix isocitrate lyase regulation
AL536_RS01065	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL536_RS01070	SM00479	AL536_RS01070
AL536_RS01075	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
AL536_RS01095	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL536_RS01135	SM00382	ATPases associated with a variety of cellular activities
AL536_RS01170	SM00421	helix_turn_helix, Lux Regulon
AL536_RS01175	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL536_RS01175	SM01134	AL536_RS01175
AL536_RS01185	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS01245	SM00382	ATPases associated with a variety of cellular activities
AL536_RS01285	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS01285	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS01295	SM00344	helix_turn_helix ASNC type
AL536_RS01330	SM00052	Putative diguanylate phosphodiesterase
AL536_RS01340	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL536_RS01355	SM00387	Histidine kinase-like ATPases
AL536_RS01355	SM00388	His Kinase A (phosphoacceptor) domain
AL536_RS01355	SM00448	cheY-homologous receiver domain
AL536_RS01360	SM00052	Putative diguanylate phosphodiesterase
AL536_RS01360	SM00267	diguanylate cyclase
AL536_RS01385	SM01266	AL536_RS01385
AL536_RS01425	SM01236	AL536_RS01425
AL536_RS01440	SM00448	cheY-homologous receiver domain
AL536_RS01440	SM00862	Transcriptional regulatory protein, C terminal
AL536_RS01445	SM00387	Histidine kinase-like ATPases
AL536_RS01445	SM00388	His Kinase A (phosphoacceptor) domain
AL536_RS01475	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS01485	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS01485	SM00871	Bacterial transcription activator, effector binding domain
AL536_RS01530	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL536_RS01535	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL536_RS01535	SM00267	diguanylate cyclase
AL536_RS01540	SM01004	Delta-aminolevulinic acid dehydratase
AL536_RS01550	SM00883	Chaperonin 10 Kd subunit
AL536_RS01555	SM00924	MgtE intracellular N domain
AL536_RS01565	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS01565	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS01570	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL536_RS01585	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL536_RS01585	SM00382	ATPases associated with a variety of cellular activities
AL536_RS01590	SM00028	Tetratricopeptide repeats
AL536_RS01605	SM00344	helix_turn_helix ASNC type
AL536_RS01615	SM00062	Bacterial periplasmic substrate-binding proteins
AL536_RS01615	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AL536_RS01625	SM00382	ATPases associated with a variety of cellular activities
AL536_RS01630	SM00936	Penicillin-binding protein 5, C-terminal domain 
AL536_RS01655	SM01057	Eukaryotic-type carbonic anhydrase
AL536_RS01695	SM00382	ATPases associated with a variety of cellular activities
AL536_RS01715	SM00487	DEAD-like helicases superfamily
AL536_RS01715	SM00490	helicase superfamily c-terminal domain
AL536_RS01720	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL536_RS01720	SM00448	cheY-homologous receiver domain
AL536_RS01725	SM00387	Histidine kinase-like ATPases
AL536_RS01725	SM00388	His Kinase A (phosphoacceptor) domain
AL536_RS01730	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS01800	SM00357	Cold shock protein domain
AL536_RS01855	SM00530	Helix-turn-helix XRE-family like proteins 
AL536_RS01865	SM00020	Trypsin-like serine protease
AL536_RS01870	SM00267	diguanylate cyclase
AL536_RS01875	SM00052	Putative diguanylate phosphodiesterase
AL536_RS01875	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL536_RS01875	SM00091	PAS domain
AL536_RS01875	SM00267	diguanylate cyclase
AL536_RS01915	SM00271	DnaJ molecular chaperone homology domain
AL536_RS01925	SM00052	Putative diguanylate phosphodiesterase
AL536_RS01925	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL536_RS01925	SM00267	diguanylate cyclase
AL536_RS01940	SM00382	ATPases associated with a variety of cellular activities
AL536_RS01955	SM00797	Allophanate hydrolase subunit 2
AL536_RS01960	SM00796	Allophanate hydrolase subunit 1
AL536_RS01970	SM00091	PAS domain
AL536_RS01970	SM00267	diguanylate cyclase
AL536_RS01970	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS01980	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS01995	SM00487	DEAD-like helicases superfamily
AL536_RS01995	SM00490	helicase superfamily c-terminal domain
AL536_RS02025	SM00382	ATPases associated with a variety of cellular activities
AL536_RS02030	SM00327	von Willebrand factor (vWF) type A domain
AL536_RS02050	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS02060	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS02065	SM00880	AL536_RS02065
AL536_RS02100	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS02125	SM00244	prohibitin homologues
AL536_RS02215	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL536_RS02215	SM00895	AL536_RS02215
AL536_RS02260	SM01005	Alanine racemase, C-terminal domain
AL536_RS02265	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS02265	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS02315	SM00862	Transcriptional regulatory protein, C terminal
AL536_RS02565	SM01252	AL536_RS02565
AL536_RS02745	SM00387	Histidine kinase-like ATPases
AL536_RS02745	SM00388	His Kinase A (phosphoacceptor) domain
AL536_RS02745	SM00448	cheY-homologous receiver domain
AL536_RS02780	SM00382	ATPases associated with a variety of cellular activities
AL536_RS02800	SM00382	ATPases associated with a variety of cellular activities
AL536_RS02805	SM00052	Putative diguanylate phosphodiesterase
AL536_RS02805	SM00267	diguanylate cyclase
AL536_RS02805	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS02830	SM00327	von Willebrand factor (vWF) type A domain
AL536_RS02845	SM00851	MGS-like domain
AL536_RS02855	SM00387	Histidine kinase-like ATPases
AL536_RS02855	SM00388	His Kinase A (phosphoacceptor) domain
AL536_RS02855	SM00448	cheY-homologous receiver domain
AL536_RS02875	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS02875	SM00387	Histidine kinase-like ATPases
AL536_RS02875	SM00388	His Kinase A (phosphoacceptor) domain
AL536_RS02880	SM00448	cheY-homologous receiver domain
AL536_RS02895	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS02900	SM00495	Chitin-binding domain type 3
AL536_RS02900	SM00636	AL536_RS02900
AL536_RS02915	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL536_RS02915	SM00267	diguanylate cyclase
AL536_RS02945	SM00822	AL536_RS02945
AL536_RS02985	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AL536_RS03000	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS03000	SM00387	Histidine kinase-like ATPases
AL536_RS03005	SM00421	helix_turn_helix, Lux Regulon
AL536_RS03005	SM00448	cheY-homologous receiver domain
AL536_RS03030	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS03055	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS03060	SM00861	Transketolase, pyrimidine binding domain
AL536_RS03075	SM00450	Rhodanese Homology Domain
AL536_RS03085	SM00852	Probable molybdopterin binding domain
AL536_RS03110	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS03145	SM00357	Cold shock protein domain
AL536_RS03170	SM00382	ATPases associated with a variety of cellular activities
AL536_RS03180	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL536_RS03180	SM00866	AL536_RS03180
AL536_RS03190	SM00631	AL536_RS03190
AL536_RS03230	SM00382	ATPases associated with a variety of cellular activities
AL536_RS03250	SM00387	Histidine kinase-like ATPases
AL536_RS03250	SM00388	His Kinase A (phosphoacceptor) domain
AL536_RS03250	SM00448	cheY-homologous receiver domain
AL536_RS03260	SM00421	helix_turn_helix, Lux Regulon
AL536_RS03260	SM00448	cheY-homologous receiver domain
AL536_RS03265	SM00267	diguanylate cyclase
AL536_RS03275	SM00421	helix_turn_helix, Lux Regulon
AL536_RS03275	SM00448	cheY-homologous receiver domain
AL536_RS03300	SM00990	AL536_RS03300
AL536_RS03330	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
AL536_RS03350	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS03380	SM00382	ATPases associated with a variety of cellular activities
AL536_RS03420	SM00862	Transcriptional regulatory protein, C terminal
AL536_RS03455	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS03455	SM00871	Bacterial transcription activator, effector binding domain
AL536_RS03480	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL536_RS03480	SM00895	AL536_RS03480
AL536_RS03490	SM00062	Bacterial periplasmic substrate-binding proteins
AL536_RS03505	SM00382	ATPases associated with a variety of cellular activities
AL536_RS03570	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
AL536_RS03575	SM01092	CO dehydrogenase flavoprotein C-terminal domain
AL536_RS03595	SM00382	ATPases associated with a variety of cellular activities
AL536_RS03610	SM00267	diguanylate cyclase
AL536_RS03620	SM00267	diguanylate cyclase
AL536_RS03635	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AL536_RS03635	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AL536_RS03645	SM00387	Histidine kinase-like ATPases
AL536_RS03645	SM00388	His Kinase A (phosphoacceptor) domain
AL536_RS03650	SM00448	cheY-homologous receiver domain
AL536_RS03650	SM00862	Transcriptional regulatory protein, C terminal
AL536_RS03690	SM00881	CoA binding domain
AL536_RS03730	SM00782	PhnA Zinc-Ribbon
AL536_RS03765	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL536_RS03770	SM00867	YceI-like domain 
AL536_RS03795	SM00052	Putative diguanylate phosphodiesterase
AL536_RS03800	SM00267	diguanylate cyclase
AL536_RS03825	SM00387	Histidine kinase-like ATPases
AL536_RS03825	SM00388	His Kinase A (phosphoacceptor) domain
AL536_RS03830	SM00448	cheY-homologous receiver domain
AL536_RS03830	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL536_RS03840	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS03850	SM00477	DNA/RNA non-specific endonuclease
AL536_RS03850	SM00892	DNA/RNA non-specific endonuclease
AL536_RS03855	SM00528	Domain in histone-like proteins of HNS family
AL536_RS03860	SM00052	Putative diguanylate phosphodiesterase
AL536_RS03860	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL536_RS03865	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS03865	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS03865	SM01049	AL536_RS03865
AL536_RS03905	SM00421	helix_turn_helix, Lux Regulon
AL536_RS03935	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AL536_RS03945	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS03945	SM00387	Histidine kinase-like ATPases
AL536_RS03950	SM00421	helix_turn_helix, Lux Regulon
AL536_RS03950	SM00448	cheY-homologous receiver domain
AL536_RS03960	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL536_RS03965	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS03980	SM00849	Metallo-beta-lactamase superfamily
AL536_RS03985	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL536_RS03985	SM00382	ATPases associated with a variety of cellular activities
AL536_RS04030	SM00354	helix_turn _helix lactose operon repressor
AL536_RS04050	SM00382	ATPases associated with a variety of cellular activities
AL536_RS04075	SM00354	helix_turn _helix lactose operon repressor
AL536_RS04080	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS04095	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS04200	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AL536_RS04220	SM00387	Histidine kinase-like ATPases
AL536_RS04220	SM00448	cheY-homologous receiver domain
AL536_RS04235	SM00354	helix_turn _helix lactose operon repressor
AL536_RS04300	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL536_RS04310	SM00450	Rhodanese Homology Domain
AL536_RS04340	SM00267	diguanylate cyclase
AL536_RS04340	SM00448	cheY-homologous receiver domain
AL536_RS04445	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AL536_RS04495	SM00822	AL536_RS04495
AL536_RS04500	SM01118	AL536_RS04500
AL536_RS04570	SM00422	helix_turn_helix, mercury resistance
AL536_RS04605	SM01022	AL536_RS04605
AL536_RS04665	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AL536_RS04670	SM00487	DEAD-like helicases superfamily
AL536_RS04670	SM00490	helicase superfamily c-terminal domain
AL536_RS04675	SM00316	Ribosomal protein S1-like RNA-binding domain
AL536_RS04675	SM00357	Cold shock protein domain
AL536_RS04675	SM00955	AL536_RS04675
AL536_RS04700	SM00788	Adenylosuccinate synthetase
AL536_RS04710	SM00862	Transcriptional regulatory protein, C terminal
AL536_RS04730	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL536_RS04760	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS04790	SM00849	Metallo-beta-lactamase superfamily
AL536_RS04800	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL536_RS04800	SM01134	AL536_RS04800
AL536_RS04805	SM01266	AL536_RS04805
AL536_RS04810	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL536_RS04810	SM00267	diguanylate cyclase
AL536_RS04815	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS04815	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS04830	SM01005	Alanine racemase, C-terminal domain
AL536_RS04855	SM00382	ATPases associated with a variety of cellular activities
AL536_RS04865	SM00448	cheY-homologous receiver domain
AL536_RS04865	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL536_RS04870	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL536_RS04870	SM00091	PAS domain
AL536_RS04870	SM00387	Histidine kinase-like ATPases
AL536_RS04870	SM00388	His Kinase A (phosphoacceptor) domain
AL536_RS04870	SM00448	cheY-homologous receiver domain
AL536_RS04895	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS04980	SM00382	ATPases associated with a variety of cellular activities
AL536_RS05020	SM00858	AL536_RS05020
AL536_RS05025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL536_RS05025	SM00895	AL536_RS05025
AL536_RS05050	SM00861	Transketolase, pyrimidine binding domain
AL536_RS05060	SM00893	Electron transfer flavoprotein domain
AL536_RS05065	SM00893	Electron transfer flavoprotein domain
AL536_RS05080	SM01217	AL536_RS05080
AL536_RS05085	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS05090	SM00382	ATPases associated with a variety of cellular activities
AL536_RS05115	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS05140	SM00421	helix_turn_helix, Lux Regulon
AL536_RS05140	SM00448	cheY-homologous receiver domain
AL536_RS05145	SM00387	Histidine kinase-like ATPases
AL536_RS05145	SM01049	AL536_RS05145
AL536_RS05175	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS05180	SM00822	AL536_RS05180
AL536_RS05185	SM00882	Coenzyme A transferase
AL536_RS05190	SM00822	AL536_RS05190
AL536_RS05225	SM00422	helix_turn_helix, mercury resistance
AL536_RS05290	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS05300	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL536_RS05315	SM00855	Phosphoglycerate mutase family
AL536_RS05415	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS05420	SM00382	ATPases associated with a variety of cellular activities
AL536_RS05450	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
AL536_RS05465	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS05465	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS05470	SM00344	helix_turn_helix ASNC type
AL536_RS05500	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS05500	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS05525	SM00448	cheY-homologous receiver domain
AL536_RS05525	SM00850	LytTr DNA-binding domain
AL536_RS05550	SM00642	Alpha-amylase domain
AL536_RS05605	SM00255	Toll - interleukin 1 - resistance
AL536_RS05625	SM00382	ATPases associated with a variety of cellular activities
AL536_RS05630	SM00382	ATPases associated with a variety of cellular activities
AL536_RS05640	SM00052	Putative diguanylate phosphodiesterase
AL536_RS05680	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL536_RS05705	SM00028	Tetratricopeptide repeats
AL536_RS05750	SM00829	Enoylreductase
AL536_RS05765	SM00382	ATPases associated with a variety of cellular activities
AL536_RS05795	SM00481	DNA polymerase alpha chain like domain
AL536_RS05805	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL536_RS05820	SM01350	AL536_RS05820
AL536_RS05830	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS05830	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS05840	SM00849	Metallo-beta-lactamase superfamily
AL536_RS05915	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS05925	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS05925	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS05975	SM00382	ATPases associated with a variety of cellular activities
AL536_RS06025	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS06045	SM00382	ATPases associated with a variety of cellular activities
AL536_RS06060	SM00829	Enoylreductase
AL536_RS06065	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS06080	SM01064	Cellulose or protein binding domain
AL536_RS06100	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS06125	SM00354	helix_turn _helix lactose operon repressor
AL536_RS06130	SM00382	ATPases associated with a variety of cellular activities
AL536_RS06155	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS06245	SM00382	ATPases associated with a variety of cellular activities
AL536_RS06260	SM01240	AL536_RS06260
AL536_RS06285	SM00448	cheY-homologous receiver domain
AL536_RS06310	SM00357	Cold shock protein domain
AL536_RS06315	SM01322	AL536_RS06315
AL536_RS06320	SM00267	diguanylate cyclase
AL536_RS06330	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL536_RS06330	SM00382	ATPases associated with a variety of cellular activities
AL536_RS06355	SM00632	AL536_RS06355
AL536_RS06355	SM00642	Alpha-amylase domain
AL536_RS06370	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS06370	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS06390	SM00327	von Willebrand factor (vWF) type A domain
AL536_RS06395	SM00028	Tetratricopeptide repeats
AL536_RS06410	SM00267	diguanylate cyclase
AL536_RS06420	SM00091	PAS domain
AL536_RS06420	SM00387	Histidine kinase-like ATPases
AL536_RS06420	SM00388	His Kinase A (phosphoacceptor) domain
AL536_RS06420	SM00448	cheY-homologous receiver domain
AL536_RS06420	SM01079	AL536_RS06420
AL536_RS06425	SM00267	diguanylate cyclase
AL536_RS06425	SM00448	cheY-homologous receiver domain
AL536_RS06460	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS06465	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AL536_RS06485	SM00062	Bacterial periplasmic substrate-binding proteins
AL536_RS06555	SM00382	ATPases associated with a variety of cellular activities
AL536_RS06555	SM00448	cheY-homologous receiver domain
AL536_RS06570	SM00872	Alpha mannosidase, middle domain
AL536_RS06580	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL536_RS06580	SM00866	AL536_RS06580
AL536_RS06585	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL536_RS06585	SM00091	PAS domain
AL536_RS06585	SM00387	Histidine kinase-like ATPases
AL536_RS06590	SM00495	Chitin-binding domain type 3
AL536_RS06600	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS06605	SM00091	PAS domain
AL536_RS06605	SM00267	diguanylate cyclase
AL536_RS06630	SM00354	helix_turn _helix lactose operon repressor
AL536_RS06650	SM00382	ATPases associated with a variety of cellular activities
AL536_RS06695	SM00382	ATPases associated with a variety of cellular activities
AL536_RS06700	SM00382	ATPases associated with a variety of cellular activities
AL536_RS06700	SM01086	C-terminal, D2-small domain, of ClpB protein
AL536_RS06760	SM00344	helix_turn_helix ASNC type
AL536_RS06770	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL536_RS06815	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL536_RS06815	SM00866	AL536_RS06815
AL536_RS06840	SM00382	ATPases associated with a variety of cellular activities
AL536_RS06850	SM00052	Putative diguanylate phosphodiesterase
AL536_RS06885	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS06890	SM00450	Rhodanese Homology Domain
AL536_RS06900	SM00421	helix_turn_helix, Lux Regulon
AL536_RS06925	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL536_RS06925	SM01134	AL536_RS06925
AL536_RS06945	SM00458	Ricin-type beta-trefoil
AL536_RS06970	SM00382	ATPases associated with a variety of cellular activities
AL536_RS07000	SM00530	Helix-turn-helix XRE-family like proteins 
AL536_RS07005	SM00327	von Willebrand factor (vWF) type A domain
AL536_RS07005	SM00609	Vault protein Inter-alpha-Trypsin domain
AL536_RS07015	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS07015	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS07055	SM00062	Bacterial periplasmic substrate-binding proteins
AL536_RS07085	SM00052	Putative diguanylate phosphodiesterase
AL536_RS07085	SM00267	diguanylate cyclase
AL536_RS07120	SM00267	diguanylate cyclase
AL536_RS07125	SM00382	ATPases associated with a variety of cellular activities
AL536_RS07145	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS07145	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS07150	SM00487	DEAD-like helicases superfamily
AL536_RS07150	SM00490	helicase superfamily c-terminal domain
AL536_RS07160	SM00257	Lysin motif
AL536_RS07170	SM00422	helix_turn_helix, mercury resistance
AL536_RS07190	SM00028	Tetratricopeptide repeats
AL536_RS07195	SM00267	diguanylate cyclase
AL536_RS07275	SM00671	Sel1-like repeats.
AL536_RS07290	SM00642	Alpha-amylase domain
AL536_RS07305	SM00382	ATPases associated with a variety of cellular activities
AL536_RS07315	SM00014	Acid phosphatase homologues
AL536_RS07325	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AL536_RS07340	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS07340	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS07350	SM00382	ATPases associated with a variety of cellular activities
AL536_RS07355	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL536_RS07360	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
AL536_RS07360	SM00636	AL536_RS07360
AL536_RS07375	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL536_RS07420	SM00257	Lysin motif
AL536_RS07440	SM00642	Alpha-amylase domain
AL536_RS07455	SM00421	helix_turn_helix, Lux Regulon
AL536_RS07495	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS07495	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS07495	SM01049	AL536_RS07495
AL536_RS07545	SM00470	ParB-like nuclease domain
AL536_RS07565	SM00448	cheY-homologous receiver domain
AL536_RS07570	SM00073	Histidine Phosphotransfer domain
AL536_RS07570	SM00260	Two component signalling adaptor domain
AL536_RS07570	SM00387	Histidine kinase-like ATPases
AL536_RS07570	SM01231	AL536_RS07570
AL536_RS07575	SM00260	Two component signalling adaptor domain
AL536_RS07580	SM00260	Two component signalling adaptor domain
AL536_RS07585	SM00091	PAS domain
AL536_RS07585	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS07585	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS07590	SM00138	Methyltransferase, chemotaxis proteins 
AL536_RS07600	SM00448	cheY-homologous receiver domain
AL536_RS07605	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL536_RS07615	SM00331	Sigma factor PP2C-like phosphatases
AL536_RS07615	SM00448	cheY-homologous receiver domain
AL536_RS07625	SM00382	ATPases associated with a variety of cellular activities
AL536_RS07630	SM00052	Putative diguanylate phosphodiesterase
AL536_RS07630	SM00267	diguanylate cyclase
AL536_RS07630	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS07650	SM00421	helix_turn_helix, Lux Regulon
AL536_RS07665	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS08045	SM01154	AL536_RS08045
AL536_RS09145	SM00936	Penicillin-binding protein 5, C-terminal domain 
AL536_RS09475	SM00091	PAS domain
AL536_RS09475	SM00267	diguanylate cyclase
AL536_RS10560	SM00636	AL536_RS10560
AL536_RS12310	SM00487	DEAD-like helicases superfamily
AL536_RS12310	SM00490	helicase superfamily c-terminal domain
AL536_RS12465	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS13950	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL536_RS13975	SM00028	Tetratricopeptide repeats
AL536_RS14075	SM00342	helix_turn_helix, arabinose operon control protein
AL536_RS14200	SM00387	Histidine kinase-like ATPases
AL536_RS14235	SM00267	diguanylate cyclase
AL536_RS14300	SM00382	ATPases associated with a variety of cellular activities
AL536_RS15045	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
AL536_RS19450	SM00267	diguanylate cyclase
AL536_RS20135	SM00382	ATPases associated with a variety of cellular activities
AL536_RS20350	SM00112	Cadherin repeats.
AL536_RS20475	SM00434	DNA Topoisomerase IV
AL536_RS20680	SM00387	Histidine kinase-like ATPases
AL536_RS20680	SM00388	His Kinase A (phosphoacceptor) domain
AL536_RS22215	SM00873	B3/4 domain
