locus-tag	class	description
NIN90_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
NIN90_RS00010	COG0592	DNA-directed DNA polymerase activity
NIN90_RS00020	COG0187	DNA topoisomerase II activity
NIN90_RS00030	COG0071	Belongs to the small heat shock protein (HSP20) family
NIN90_RS00035	COG3977	Valine--pyruvate aminotransferase
NIN90_RS00040	COG0751	glycine-tRNA ligase activity
NIN90_RS00045	COG0752	glycyl-tRNA synthetase alpha subunit
NIN90_RS00050	COG2119	membrane
NIN90_RS00060	COG0425	Belongs to the sulfur carrier protein TusA family
NIN90_RS00090	COG0604	alcohol dehydrogenase
NIN90_RS00105	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
NIN90_RS00110	COG3978	acetolactate synthase activity
NIN90_RS00120	COG0606	chelatase, subunit chli
NIN90_RS00125	COG0204	Acyl-transferase
NIN90_RS00130	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NIN90_RS00135	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
NIN90_RS00145	COG3084	Protein conserved in bacteria
NIN90_RS00150	COG4326	sporulation control protein
NIN90_RS00155	COG1272	protein, Hemolysin III
NIN90_RS00165	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
NIN90_RS00170	COG0569	domain protein
NIN90_RS00175	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
NIN90_RS00175	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NIN90_RS00195	COG0758	DNA mediated transformation
NIN90_RS00200	COG2922	Belongs to the Smg family
NIN90_RS00205	COG0551	DNA topoisomerase type I activity
NIN90_RS00210	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
NIN90_RS00215	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
NIN90_RS00225	COG0408	coproporphyrinogen oxidase activity
NIN90_RS00230	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
NIN90_RS00240	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
NIN90_RS00280	COG0583	DNA-binding transcription factor activity
NIN90_RS00285	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
NIN90_RS00290	COG2960	long-chain fatty acid transporting porin activity
NIN90_RS00295	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NIN90_RS00300	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NIN90_RS00305	COG1309	transcriptional regulator
NIN90_RS00350	COG0747	negative chemotaxis
NIN90_RS00355	COG0601	transmembrane transport
NIN90_RS00360	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NIN90_RS00395	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NIN90_RS00400	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NIN90_RS00415	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NIN90_RS00420	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
NIN90_RS00455	COG0210	DNA helicase
NIN90_RS00460	COG0405	Gamma-glutamyltransferase
NIN90_RS00465	COG1280	lysine exporter protein (LysE YggA)
NIN90_RS00475	COG2962	Rard protein
NIN90_RS00480	COG0514	ATP-dependent DNA helicase (RecQ)
NIN90_RS00495	COG1132	(ABC) transporter
NIN90_RS00500	COG4774	siderophore transport
NIN90_RS00505	COG1120	ATPase activity
NIN90_RS00510	COG4607	ABC-type enterochelin transport system periplasmic component
NIN90_RS00520	COG2862	Uncharacterized protein family, UPF0114
NIN90_RS00525	COG1561	YicC-like family, N-terminal region
NIN90_RS00530	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
NIN90_RS00535	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
NIN90_RS00540	COG1560	Kdo2-lipid A biosynthetic process
NIN90_RS00545	COG1309	transcriptional regulator
NIN90_RS00555	COG0840	transmembrane signaling receptor activity
NIN90_RS00560	COG2003	Belongs to the UPF0758 family
NIN90_RS00565	COG0227	Belongs to the bacterial ribosomal protein bL28 family
NIN90_RS00570	COG0267	Belongs to the bacterial ribosomal protein bL33 family
NIN90_RS00580	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
NIN90_RS00595	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
NIN90_RS00600	COG0438	transferase activity, transferring glycosyl groups
NIN90_RS00605	COG0438	transferase activity, transferring glycosyl groups
NIN90_RS00610	COG0463	Glycosyl transferase, family 2
NIN90_RS00615	COG0859	PFAM glycosyl transferase family 9
NIN90_RS00620	COG3642	lipopolysaccharide core region biosynthetic process
NIN90_RS00625	COG1519	Transferase
NIN90_RS00630	COG0859	PFAM glycosyl transferase family 9
NIN90_RS00645	COG0438	transferase activity, transferring glycosyl groups
NIN90_RS00660	COG1560	Kdo2-lipid A biosynthetic process
NIN90_RS00670	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NIN90_RS00675	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NIN90_RS00705	COG3206	protein involved in exopolysaccharide biosynthesis
NIN90_RS00705	COG0489	protein tyrosine kinase activity
NIN90_RS00715	COG5433	transposase activity
NIN90_RS00720	COG5433	transposase activity
NIN90_RS00725	COG5433	transposase activity
NIN90_RS00730	COG5433	transposase activity
NIN90_RS00740	COG2244	polysaccharide biosynthetic process
NIN90_RS00775	COG3955	Domain of unknown function (DUF1919)
NIN90_RS00780	COG5433	transposase activity
NIN90_RS00815	COG2161	toxin-antitoxin pair type II binding
NIN90_RS00845	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
NIN90_RS00875	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NIN90_RS00885	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS00895	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS00910	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
NIN90_RS00920	COG0438	transferase activity, transferring glycosyl groups
NIN90_RS00920	COG4641	Protein conserved in bacteria
NIN90_RS00930	COG0438	transferase activity, transferring glycosyl groups
NIN90_RS00935	COG0438	transferase activity, transferring glycosyl groups
NIN90_RS00940	COG3562	capsule polysaccharide
NIN90_RS00945	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
NIN90_RS00950	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
NIN90_RS00975	COG0741	lytic transglycosylase activity
NIN90_RS00995	COG1573	uracil-dna glycosylase
NIN90_RS01000	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NIN90_RS01005	COG3068	Protein conserved in bacteria
NIN90_RS01010	COG0668	transmembrane transport
NIN90_RS01015	COG1253	flavin adenine dinucleotide binding
NIN90_RS01020	COG0776	regulation of translation
NIN90_RS01030	COG0151	Belongs to the GarS family
NIN90_RS01035	COG0138	bifunctional purine biosynthesis protein purh
NIN90_RS01045	COG0789	Transcriptional regulator
NIN90_RS01050	COG0840	transmembrane signaling receptor activity
NIN90_RS01055	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
NIN90_RS01060	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NIN90_RS01065	COG2264	protein methyltransferase activity
NIN90_RS01070	COG0439	Biotin carboxylase
NIN90_RS01075	COG0511	ligase activity, forming carbon-carbon bonds
NIN90_RS01080	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
NIN90_RS01085	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
NIN90_RS01100	COG2814	Major facilitator Superfamily
NIN90_RS01105	COG2205	protein histidine kinase activity
NIN90_RS01105	COG2198	Histidine kinase
NIN90_RS01105	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NIN90_RS01105	COG0784	Response regulator, receiver
NIN90_RS01110	COG0248	Ppx GppA phosphatase
NIN90_RS01115	COG0513	Belongs to the DEAD box helicase family
NIN90_RS01120	COG3118	belongs to the thioredoxin family
NIN90_RS01135	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
NIN90_RS01180	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NIN90_RS01190	COG0812	UDP-N-acetylmuramate dehydrogenase activity
NIN90_RS01200	COG1072	(Pantothenic acid kinase))
NIN90_RS01230	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
NIN90_RS01235	COG0250	Participates in transcription elongation, termination and antitermination
NIN90_RS01250	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
NIN90_RS01255	COG0222	ribosome binding
NIN90_RS01260	COG0085	RNA polymerase activity
NIN90_RS01265	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
NIN90_RS01270	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
NIN90_RS01275	COG2816	NAD+ diphosphatase activity
NIN90_RS01280	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
NIN90_RS01295	COG4942	peptidase
NIN90_RS01300	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
NIN90_RS01315	COG0490	domain, Protein
NIN90_RS01315	COG0471	metal ion transport
NIN90_RS01320	COG0688	phosphatidylethanolamine metabolic process
NIN90_RS01325	COG1162	GTPase activity
NIN90_RS01380	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
NIN90_RS01385	COG0802	atpase or kinase
NIN90_RS01395	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
NIN90_RS01400	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
NIN90_RS01410	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
NIN90_RS01415	COG0330	HflC and HflK could
NIN90_RS01420	COG0330	HflC and HflK could
NIN90_RS01425	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
NIN90_RS01430	COG2900	Belongs to the SlyX family
NIN90_RS01440	COG0545	Peptidyl-prolyl cis-trans isomerase
NIN90_RS01445	COG2964	Protein conserved in bacteria
NIN90_RS01455	COG2923	Belongs to the DsrF TusC family
NIN90_RS01460	COG2168	tRNA wobble position uridine thiolation
NIN90_RS01470	COG0049	tRNA binding
NIN90_RS01475	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
NIN90_RS01485	COG2906	2 iron, 2 sulfur cluster binding
NIN90_RS01495	COG0360	Binds together with S18 to 16S ribosomal RNA
NIN90_RS01500	COG2965	DNA replication, synthesis of RNA primer
NIN90_RS01510	COG0359	binds to the 23S rRNA
NIN90_RS01525	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NIN90_RS01535	COG0166	Belongs to the GPI family
NIN90_RS01545	COG0735	belongs to the Fur family
NIN90_RS01550	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
NIN90_RS01570	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NIN90_RS01580	COG0175	sulfate reduction
NIN90_RS01645	COG1410	methionine synthase
NIN90_RS01645	COG0646	methionine synthase
NIN90_RS01650	COG0527	aspartate kinase activity
NIN90_RS01655	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
NIN90_RS01665	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
NIN90_RS01680	COG0629	single-stranded DNA binding
NIN90_RS01685	COG2200	EAL domain
NIN90_RS01685	COG2199	diguanylate cyclase activity
NIN90_RS01710	COG3267	Type II secretory pathway component ExeA
NIN90_RS01710	COG3409	Peptidoglycan-binding domain 1 protein
NIN90_RS01720	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NIN90_RS01725	COG1459	type II secretion system
NIN90_RS01735	COG2165	general secretion pathway protein
NIN90_RS01770	COG1077	Cell shape determining protein MreB Mrl
NIN90_RS01775	COG1792	Involved in formation and maintenance of cell shape
NIN90_RS01780	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
NIN90_RS01785	COG0424	maF-like protein
NIN90_RS01790	COG1530	ribonuclease E activity
NIN90_RS01795	COG3164	Protein of unknown function
NIN90_RS01800	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NIN90_RS01805	COG0312	modulator of DNA gyrase
NIN90_RS01830	COG0589	response to stress
NIN90_RS01845	COG1438	arginine binding
NIN90_RS01850	COG0039	L-malate dehydrogenase activity
NIN90_RS01855	COG0531	amino acid
NIN90_RS01860	COG0142	geranyltranstransferase activity
NIN90_RS01865	COG0261	This protein binds to 23S rRNA in the presence of protein L20
NIN90_RS01875	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
NIN90_RS01880	COG2966	Psort location CytoplasmicMembrane, score
NIN90_RS01885	COG3610	response to peptide
NIN90_RS01895	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
NIN90_RS01900	COG2967	ApaG domain
NIN90_RS01905	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
NIN90_RS01910	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
NIN90_RS01915	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NIN90_RS01920	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
NIN90_RS01925	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
NIN90_RS01975	COG0741	lytic transglycosylase activity
NIN90_RS01980	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
NIN90_RS01990	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
NIN90_RS01995	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NIN90_RS02000	COG1120	ATPase activity
NIN90_RS02005	COG1194	a g-specific adenine glycosylase
NIN90_RS02010	COG0220	tRNA (guanine-N7-)-methyltransferase activity
NIN90_RS02015	COG2066	Belongs to the glutaminase family
NIN90_RS02020	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NIN90_RS02025	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
NIN90_RS02035	COG1872	DUF167
NIN90_RS02040	COG0762	integral membrane protein
NIN90_RS02045	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
NIN90_RS02050	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
NIN90_RS02065	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
NIN90_RS02070	COG1678	Uncharacterized ACR, COG1678
NIN90_RS02075	COG0189	ligase activity
NIN90_RS02080	COG1385	rRNA (uridine-N3-)-methyltransferase activity
NIN90_RS02085	COG2356	endonuclease I
NIN90_RS02100	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
NIN90_RS02105	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
NIN90_RS02110	COG0583	DNA-binding transcription factor activity
NIN90_RS02115	COG4771	TonB-dependent receptor
NIN90_RS02120	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NIN90_RS02125	COG0126	phosphoglycerate kinase activity
NIN90_RS02130	COG0191	fructose-bisphosphate aldolase activity
NIN90_RS02135	COG0668	transmembrane transport
NIN90_RS02145	COG1279	arginine transmembrane transporter activity
NIN90_RS02170	COG1349	DNA-binding transcription factor activity
NIN90_RS02175	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
NIN90_RS02180	COG0583	DNA-binding transcription factor activity
NIN90_RS02200	COG2239	Acts as a magnesium transporter
NIN90_RS02230	COG0358	DNA primase activity
NIN90_RS02235	COG1610	YqeY-like protein
NIN90_RS02240	COG0828	Belongs to the bacterial ribosomal protein bS21 family
NIN90_RS02245	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
NIN90_RS02255	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
NIN90_RS02260	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
NIN90_RS02265	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
NIN90_RS02270	COG1968	undecaprenyl-diphosphatase activity
NIN90_RS02275	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
NIN90_RS02280	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
NIN90_RS02290	COG0585	pseudouridine synthase activity
NIN90_RS02295	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
NIN90_RS02300	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
NIN90_RS02305	COG1388	LysM domain
NIN90_RS02305	COG4942	peptidase
NIN90_RS02310	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
NIN90_RS02315	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
NIN90_RS02320	COG1546	Belongs to the CinA family
NIN90_RS02325	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
NIN90_RS02330	COG2137	regulation of response to DNA damage stimulus
NIN90_RS02335	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
NIN90_RS02340	COG0527	aspartate kinase activity
NIN90_RS02390	COG3630	sodium ion export across plasma membrane
NIN90_RS02395	COG5016	pyruvate
NIN90_RS02395	COG0511	ligase activity, forming carbon-carbon bonds
NIN90_RS02400	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
NIN90_RS02410	COG1238	metal cluster binding
NIN90_RS02415	COG0612	Peptidase, M16
NIN90_RS02420	COG2918	glutathione biosynthetic process
NIN90_RS02430	COG1854	S-ribosylhomocysteine lyase activity
NIN90_RS02435	COG4536	flavin adenine dinucleotide binding
NIN90_RS02440	COG4137	Cytochrome C assembly protein
NIN90_RS02445	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
NIN90_RS02455	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
NIN90_RS02460	COG0336	Belongs to the RNA methyltransferase TrmD family
NIN90_RS02465	COG0335	large ribosomal subunit rRNA binding
NIN90_RS02470	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NIN90_RS02475	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
NIN90_RS02480	COG3105	Protein conserved in bacteria
NIN90_RS02485	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
NIN90_RS02490	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
NIN90_RS02495	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
NIN90_RS02505	COG0723	plastoquinol--plastocyanin reductase activity
NIN90_RS02510	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
NIN90_RS02515	COG2857	Cytochrome c1
NIN90_RS02520	COG0625	glutathione transferase activity
NIN90_RS02525	COG2969	positive regulation of protein catabolic process
NIN90_RS02530	COG2823	Periplasmic or secreted lipoprotein
NIN90_RS02535	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
NIN90_RS02540	COG0792	nuclease activity
NIN90_RS02545	COG3107	peptidoglycan biosynthetic process
NIN90_RS02550	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
NIN90_RS02565	COG3116	cell division
NIN90_RS02570	COG0768	penicillin binding
NIN90_RS02575	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
NIN90_RS02580	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
NIN90_RS02590	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
NIN90_RS02595	COG0772	Belongs to the SEDS family
NIN90_RS02600	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
NIN90_RS02605	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NIN90_RS02610	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
NIN90_RS02615	COG0849	cell division
NIN90_RS02620	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
NIN90_RS02625	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
NIN90_RS02635	COG0653	protein targeting
NIN90_RS02640	COG0494	nUDIX hydrolase
NIN90_RS02645	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
NIN90_RS02650	COG0505	Belongs to the CarA family
NIN90_RS02655	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
NIN90_RS02665	COG3479	Phenolic acid decarboxylase
NIN90_RS02670	COG0730	response to heat
NIN90_RS02675	COG0583	DNA-binding transcription factor activity
NIN90_RS02695	COG2860	membrane
NIN90_RS02700	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
NIN90_RS02710	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
NIN90_RS02720	COG0493	'glutamate synthase
NIN90_RS02725	COG0067	glutamate synthase
NIN90_RS02725	COG0069	glutamate synthase activity
NIN90_RS02725	COG0070	glutamate synthase
NIN90_RS02735	COG0067	glutamate synthase
NIN90_RS02735	COG0070	glutamate synthase
NIN90_RS02735	COG0069	glutamate synthase activity
NIN90_RS02740	COG1242	4 iron, 4 sulfur cluster binding
NIN90_RS02745	COG5001	Diguanylate cyclase
NIN90_RS02745	COG3706	GGDEF domain
NIN90_RS02745	COG2203	Gaf domain
NIN90_RS02745	COG4251	negative regulation of phosphorylation
NIN90_RS02750	COG2198	Histidine kinase
NIN90_RS02750	COG0784	Response regulator, receiver
NIN90_RS02750	COG5002	protein histidine kinase activity
NIN90_RS02760	COG0745	RESPONSE REGULATOR receiver
NIN90_RS02770	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NIN90_RS02785	COG0083	homoserine kinase activity
NIN90_RS02790	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
NIN90_RS02795	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
NIN90_RS02805	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
NIN90_RS02820	COG1115	amino acid carrier protein
NIN90_RS02825	COG3022	response to hydroperoxide
NIN90_RS02835	COG0084	hydrolase, TatD family'
NIN90_RS02840	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NIN90_RS02850	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
NIN90_RS02855	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
NIN90_RS02860	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
NIN90_RS02865	COG0813	purine-nucleoside phosphorylase activity
NIN90_RS02875	COG0560	Phosphoserine phosphatase
NIN90_RS02885	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
NIN90_RS02890	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
NIN90_RS02895	COG0583	DNA-binding transcription factor activity
NIN90_RS02905	COG0583	DNA-binding transcription factor activity
NIN90_RS02910	COG1022	Amp-dependent synthetase and ligase
NIN90_RS02940	COG4964	Belongs to the GSP D family
NIN90_RS02995	COG2059	Chromate
NIN90_RS03000	COG2017	converts alpha-aldose to the beta-anomer
NIN90_RS03005	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NIN90_RS03035	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
NIN90_RS03040	COG2171	N-acyltransferase activity
NIN90_RS03045	COG3141	response to X-ray
NIN90_RS03050	COG0583	DNA-binding transcription factor activity
NIN90_RS03060	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
NIN90_RS03065	COG1074	ATP-dependent DNA helicase activity
NIN90_RS03070	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
NIN90_RS03080	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
NIN90_RS03080	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
NIN90_RS03090	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
NIN90_RS03095	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
NIN90_RS03100	COG2166	iron-sulfur cluster assembly
NIN90_RS03105	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NIN90_RS03110	COG0693	protein deglycase activity
NIN90_RS03115	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
NIN90_RS03130	COG1595	DNA-templated transcription, initiation
NIN90_RS03140	COG0477	Major facilitator Superfamily
NIN90_RS03145	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NIN90_RS03150	COG0826	peptidase U32
NIN90_RS03160	COG0745	RESPONSE REGULATOR receiver
NIN90_RS03165	COG5002	protein histidine kinase activity
NIN90_RS03175	COG0248	Ppx GppA phosphatase
NIN90_RS03180	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
NIN90_RS03185	COG0573	inorganic phosphate transmembrane transporter activity
NIN90_RS03190	COG0581	inorganic phosphate transmembrane transporter activity
NIN90_RS03195	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
NIN90_RS03200	COG0704	Plays a role in the regulation of phosphate uptake
NIN90_RS03215	COG0450	alkyl hydroperoxide reductase
NIN90_RS03220	COG0583	DNA-binding transcription factor activity
NIN90_RS03225	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
NIN90_RS03235	COG0840	transmembrane signaling receptor activity
NIN90_RS03240	COG0517	IMP dehydrogenase activity
NIN90_RS03245	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
NIN90_RS03255	COG1862	Preprotein translocase
NIN90_RS03260	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NIN90_RS03265	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NIN90_RS03270	COG1335	isochorismatase
NIN90_RS03275	COG0483	inositol monophosphate 1-phosphatase activity
NIN90_RS03280	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
NIN90_RS03285	COG1959	2 iron, 2 sulfur cluster binding
NIN90_RS03290	COG1104	cysteine desulfurase activity
NIN90_RS03295	COG0822	iron-sulfur transferase activity
NIN90_RS03310	COG0443	Heat shock 70 kDa protein
NIN90_RS03315	COG0633	Ferredoxin
NIN90_RS03320	COG2975	iron-sulfur cluster assembly
NIN90_RS03325	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
NIN90_RS03330	COG0105	UTP biosynthetic process
NIN90_RS03345	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
NIN90_RS03350	COG0124	histidyl-tRNA synthetase
NIN90_RS03355	COG2976	Protein conserved in bacteria
NIN90_RS03360	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NIN90_RS03365	COG1160	GTP binding
NIN90_RS03380	COG1570	exodeoxyribonuclease VII activity
NIN90_RS03385	COG0517	IMP dehydrogenase activity
NIN90_RS03385	COG0516	GMP reductase activity
NIN90_RS03390	COG0518	GMP synthase (glutamine-hydrolyzing) activity
NIN90_RS03390	COG0519	Catalyzes the synthesis of GMP from XMP
NIN90_RS03400	COG1584	GPR1 FUN34 yaaH family protein
NIN90_RS03405	COG3710	Transcriptional regulator
NIN90_RS03420	COG3188	usher protein
NIN90_RS03425	COG3121	Chaperone
NIN90_RS03445	COG1115	amino acid carrier protein
NIN90_RS03460	COG0583	DNA-binding transcription factor activity
NIN90_RS03465	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
NIN90_RS03510	COG0210	DNA helicase
NIN90_RS03550	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
NIN90_RS03575	COG0582	viral genome integration into host DNA
NIN90_RS03585	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
NIN90_RS03590	COG2867	negative regulation of translational initiation
NIN90_RS03595	COG2914	Belongs to the UPF0125 (RnfH) family
NIN90_RS03600	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NIN90_RS03605	COG0497	DNA recombination
NIN90_RS03610	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
NIN90_RS03615	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
NIN90_RS03625	COG0443	Heat shock 70 kDa protein
NIN90_RS03630	COG0484	heat shock protein binding
NIN90_RS03660	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
NIN90_RS03665	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
NIN90_RS03675	COG0583	DNA-binding transcription factor activity
NIN90_RS03680	COG0590	tRNA wobble adenosine to inosine editing
NIN90_RS03685	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
NIN90_RS03690	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
NIN90_RS03690	COG0047	phosphoribosylformylglycinamidine synthase activity
NIN90_RS03715	COG0442	prolyl-tRNA aminoacylation
NIN90_RS03720	COG1720	tRNA m6t6A37 methyltransferase activity
NIN90_RS03725	COG0254	rRNA binding
NIN90_RS03730	COG0257	Belongs to the bacterial ribosomal protein bL36 family
NIN90_RS03735	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
NIN90_RS03740	COG1671	Belongs to the UPF0178 family
NIN90_RS03765	COG3098	single-species biofilm formation
NIN90_RS03770	COG0564	pseudouridine synthase activity
NIN90_RS03775	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
NIN90_RS03780	COG0142	geranyltranstransferase activity
NIN90_RS03785	COG1722	exodeoxyribonuclease VII activity
NIN90_RS03790	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
NIN90_RS03800	COG0301	tRNA thio-modification
NIN90_RS03800	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NIN90_RS03805	COG0583	DNA-binding transcription factor activity
NIN90_RS03815	COG2363	Small membrane protein
NIN90_RS03825	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NIN90_RS03830	COG1611	Belongs to the LOG family
NIN90_RS03845	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
NIN90_RS03845	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
NIN90_RS03855	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
NIN90_RS03860	COG1464	Belongs to the NlpA lipoprotein family
NIN90_RS03865	COG2011	ABC-type metal ion transport system permease component
NIN90_RS03870	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
NIN90_RS03875	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
NIN90_RS03890	COG1263	PTS System
NIN90_RS03890	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NIN90_RS03895	COG0366	Alpha amylase catalytic
NIN90_RS03920	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NIN90_RS03925	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NIN90_RS03935	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
NIN90_RS03945	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
NIN90_RS03950	COG0321	lipoyl(octanoyl) transferase activity
NIN90_RS03955	COG2921	Belongs to the UPF0250 family
NIN90_RS03960	COG1686	Belongs to the peptidase S11 family
NIN90_RS03965	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
NIN90_RS03970	COG0772	Belongs to the SEDS family
NIN90_RS03975	COG0768	penicillin binding
NIN90_RS03980	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
NIN90_RS03985	COG0799	negative regulation of ribosome biogenesis
NIN90_RS03990	COG1466	dna polymerase III delta subunit
NIN90_RS03995	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
NIN90_RS04000	COG0495	leucyl-tRNA aminoacylation
NIN90_RS04005	COG2888	peptidyl-tyrosine sulfation
NIN90_RS04010	COG0815	Transfers the fatty acyl group on membrane lipoproteins
NIN90_RS04015	COG4535	Mg2 and Co2 transporter CorC
NIN90_RS04020	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
NIN90_RS04025	COG1702	phosphate starvation-inducible protein PhoH
NIN90_RS04030	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
NIN90_RS04035	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NIN90_RS04040	COG2190	(PTS) system
NIN90_RS04050	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NIN90_RS04055	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
NIN90_RS04060	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
NIN90_RS04065	COG3115	cell septum assembly
NIN90_RS04070	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
NIN90_RS04085	COG0789	Transcriptional regulator
NIN90_RS04095	COG0330	HflC and HflK could
NIN90_RS04100	COG3118	belongs to the thioredoxin family
NIN90_RS04105	COG0300	oxidoreductase activity
NIN90_RS04110	COG1090	epimerase
NIN90_RS04135	COG0622	Phosphoesterase
NIN90_RS04150	COG3710	Transcriptional regulator
NIN90_RS04155	COG0326	Molecular chaperone. Has ATPase activity
NIN90_RS04165	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
NIN90_RS04180	COG0367	asparagine synthase
NIN90_RS04185	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NIN90_RS04185	COG4651	solute:proton antiporter activity
NIN90_RS04190	COG1846	Transcriptional regulator
NIN90_RS04190	COG1940	carbohydrate kinase activity
NIN90_RS04195	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
NIN90_RS04200	COG2190	(PTS) system
NIN90_RS04200	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NIN90_RS04200	COG1263	PTS System
NIN90_RS04215	COG0101	tRNA pseudouridine synthase activity
NIN90_RS04220	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
NIN90_RS04225	COG0285	dihydrofolate synthase activity
NIN90_RS04230	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
NIN90_RS04235	COG1286	toxin biosynthetic process
NIN90_RS04240	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
NIN90_RS04245	COG2056	Na+-H+ antiporter family
NIN90_RS04250	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NIN90_RS04265	COG0346	lactoylglutathione lyase activity
NIN90_RS04270	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
NIN90_RS04275	COG4660	Part of a membrane complex involved in electron transport
NIN90_RS04280	COG4659	FMN binding
NIN90_RS04285	COG4658	electron transport chain
NIN90_RS04290	COG4656	Part of a membrane complex involved in electron transport
NIN90_RS04295	COG2878	Part of a membrane complex involved in electron transport
NIN90_RS04300	COG4657	Part of a membrane complex involved in electron transport
NIN90_RS04305	COG1882	Formate acetyltransferase
NIN90_RS04315	COG0556	nucleotide-excision repair
NIN90_RS04320	COG2204	response regulator
NIN90_RS04325	COG2198	Histidine kinase
NIN90_RS04330	COG0391	Required for morphogenesis under gluconeogenic growth conditions
NIN90_RS04335	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
NIN90_RS04340	COG0521	Mo-molybdopterin cofactor biosynthetic process
NIN90_RS04345	COG0315	cyclic pyranopterin monophosphate synthase activity
NIN90_RS04350	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
NIN90_RS04355	COG0314	molybdopterin synthase activity
NIN90_RS04360	COG3706	GGDEF domain
NIN90_RS04365	COG0517	IMP dehydrogenase activity
NIN90_RS04365	COG0617	tRNA 3'-terminal CCA addition
NIN90_RS04365	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
NIN90_RS04375	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
NIN90_RS04385	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NIN90_RS04385	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NIN90_RS04395	COG0572	uridine kinase
NIN90_RS04400	COG2982	Protein involved in outer membrane biogenesis
NIN90_RS04405	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
NIN90_RS04425	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
NIN90_RS04430	COG2067	long-chain fatty acid transport protein
NIN90_RS04450	COG0183	Belongs to the thiolase family
NIN90_RS04455	COG1250	3-hydroxyacyl-CoA dehydrogenase
NIN90_RS04455	COG1024	Enoyl-CoA hydratase
NIN90_RS04460	COG0778	Nitroreductase
NIN90_RS04465	COG0583	DNA-binding transcription factor activity
NIN90_RS04470	COG0745	RESPONSE REGULATOR receiver
NIN90_RS04475	COG2832	Protein of unknown function (DUF454)
NIN90_RS04480	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
NIN90_RS04490	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
NIN90_RS04495	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
NIN90_RS04500	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
NIN90_RS04510	COG2983	Belongs to the UPF0260 family
NIN90_RS04525	COG2226	methyltransferase
NIN90_RS04530	COG0676	glucose-6-phosphate 1-epimerase activity
NIN90_RS04535	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NIN90_RS04540	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NIN90_RS04550	COG3139	Protein of unknown function (DUF1315)
NIN90_RS04555	COG0252	asparaginase activity
NIN90_RS04560	COG0616	signal peptide processing
NIN90_RS04565	COG0446	pyridine nucleotide-disulphide oxidoreductase
NIN90_RS04565	COG1902	pentaerythritol trinitrate reductase activity
NIN90_RS04570	COG0788	formyltetrahydrofolate deformylase activity
NIN90_RS04580	COG1199	ATP-dependent helicase activity
NIN90_RS04585	COG1214	PFAM Peptidase M22, glycoprotease
NIN90_RS04600	COG2267	carboxylic ester hydrolase activity
NIN90_RS04605	COG0318	PFAM AMP-dependent synthetase and ligase
NIN90_RS04610	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
NIN90_RS04620	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
NIN90_RS04625	COG2894	cell division
NIN90_RS04630	COG0850	regulation of cytokinetic process
NIN90_RS04635	COG3100	YcgL domain-containing protein
NIN90_RS04640	COG2951	lytic endotransglycosylase activity
NIN90_RS04650	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NIN90_RS04655	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
NIN90_RS04670	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
NIN90_RS04675	COG2211	Major facilitator Superfamily
NIN90_RS04720	COG4589	Belongs to the CDS family
NIN90_RS04740	COG3153	acetyltransferase
NIN90_RS04740	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
NIN90_RS04750	COG1760	l-serine dehydratase
NIN90_RS04755	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
NIN90_RS04775	COG1404	Belongs to the peptidase S8 family
NIN90_RS04780	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
NIN90_RS04785	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
NIN90_RS04790	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
NIN90_RS04795	COG2204	response regulator
NIN90_RS04800	COG4191	Histidine kinase
NIN90_RS04810	COG0544	peptidyl-prolyl cis-trans isomerase activity
NIN90_RS04820	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
NIN90_RS04825	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
NIN90_RS04830	COG0776	regulation of translation
NIN90_RS04835	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NIN90_RS04840	COG1555	photosystem II stabilization
NIN90_RS04845	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
NIN90_RS04850	COG0539	negative regulation of cytoplasmic translation
NIN90_RS04855	COG0776	regulation of translation
NIN90_RS04860	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
NIN90_RS04865	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
NIN90_RS04900	COG0583	DNA-binding transcription factor activity
NIN90_RS04910	COG0686	Belongs to the AlaDH PNT family
NIN90_RS04915	COG1522	sequence-specific DNA binding
NIN90_RS04920	COG1674	ftsk spoiiie
NIN90_RS04925	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
NIN90_RS04930	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
NIN90_RS04935	COG2186	Transcriptional regulator
NIN90_RS04950	COG0537	adenosine 5'-monophosphoramidase activity
NIN90_RS04975	COG3150	esterase
NIN90_RS04980	COG1252	NADH dehydrogenase
NIN90_RS04995	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
NIN90_RS05005	COG4591	ABC-type transport system involved in lipoprotein release permease component
NIN90_RS05010	COG1136	(ABC) transporter
NIN90_RS05015	COG4591	ABC-type transport system involved in lipoprotein release permease component
NIN90_RS05025	COG0658	competence protein
NIN90_RS05025	COG2333	competence protein COMEC
NIN90_RS05030	COG1132	(ABC) transporter
NIN90_RS05035	COG1663	tetraacyldisaccharide 4'-kinase activity
NIN90_RS05045	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
NIN90_RS05050	COG2719	SpoVR family
NIN90_RS05055	COG2718	Belongs to the UPF0229 family
NIN90_RS05060	COG2766	serine protein kinase
NIN90_RS05065	COG3713	MltA-interacting MipA family protein
NIN90_RS05070	COG3013	Belongs to the UPF0304 family
NIN90_RS05080	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
NIN90_RS05095	COG1882	Formate acetyltransferase
NIN90_RS05120	COG4160	amino acid transport
NIN90_RS05125	COG0708	Exodeoxyribonuclease III
NIN90_RS05130	COG0840	transmembrane signaling receptor activity
NIN90_RS05140	COG3923	Primosomal replication protein n
NIN90_RS05145	COG1199	ATP-dependent helicase activity
NIN90_RS05150	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
NIN90_RS05155	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
NIN90_RS05160	COG3012	SEC-C Motif Domain Protein
NIN90_RS05165	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
NIN90_RS05170	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NIN90_RS05175	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
NIN90_RS05180	COG0215	cysteine-tRNA ligase activity
NIN90_RS05185	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
NIN90_RS05190	COG0632	four-way junction helicase activity
NIN90_RS05195	COG2255	four-way junction helicase activity
NIN90_RS05200	COG1271	oxidase subunit
NIN90_RS05205	COG1294	oxidase, subunit
NIN90_RS05210	COG4890	Cyd operon protein YbgT
NIN90_RS05220	COG0824	Thioesterase
NIN90_RS05225	COG0811	peptide transport
NIN90_RS05240	COG0823	Involved in the tonB-independent uptake of proteins
NIN90_RS05245	COG2885	chlorophyll binding
NIN90_RS05250	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
NIN90_RS05255	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
NIN90_RS05265	COG0784	Response regulator, receiver
NIN90_RS05265	COG5002	protein histidine kinase activity
NIN90_RS05290	COG3366	ferrous iron transmembrane transporter activity
NIN90_RS05295	COG0700	Nucleoside recognition
NIN90_RS05300	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
NIN90_RS05305	COG1012	belongs to the aldehyde dehydrogenase family
NIN90_RS05325	COG1960	acyl-CoA dehydrogenase activity
NIN90_RS05330	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
NIN90_RS05340	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
NIN90_RS05350	COG1737	Transcriptional regulator
NIN90_RS05355	COG0076	glutamate decarboxylase activity
NIN90_RS05365	COG2431	L-lysine efflux transmembrane transporter activity
NIN90_RS05375	COG3070	regulator of competence-specific genes
NIN90_RS05390	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NIN90_RS05390	COG4191	Histidine kinase
NIN90_RS05400	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
NIN90_RS05405	COG1053	succinate dehydrogenase
NIN90_RS05420	COG3940	Belongs to the glycosyl hydrolase 43 family
NIN90_RS05425	COG2211	Major facilitator Superfamily
NIN90_RS05430	COG1032	radical SAM domain protein
NIN90_RS05435	COG0488	(ABC) transporter
NIN90_RS05445	COG0346	lactoylglutathione lyase activity
NIN90_RS05465	COG0583	DNA-binding transcription factor activity
NIN90_RS05475	COG0840	transmembrane signaling receptor activity
NIN90_RS05480	COG2200	EAL domain
NIN90_RS05480	COG2771	luxR family
NIN90_RS05495	COG0612	Peptidase, M16
NIN90_RS05510	COG0583	DNA-binding transcription factor activity
NIN90_RS05545	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
NIN90_RS05555	COG1815	bacterial-type flagellum-dependent cell motility
NIN90_RS05560	COG1558	bacterial-type flagellum-dependent cell motility
NIN90_RS05565	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
NIN90_RS05570	COG1749	Flagellar hook protein flgE
NIN90_RS05580	COG4786	Flagellar basal body rod
NIN90_RS05585	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
NIN90_RS05590	COG1706	bacterial-type flagellum-dependent cell motility
NIN90_RS05615	COG1677	Flagellar hook-basal body complex protein FliE
NIN90_RS05625	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
NIN90_RS05655	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NIN90_RS05660	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NIN90_RS05665	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NIN90_RS05670	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
NIN90_RS05700	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
NIN90_RS05705	COG1360	Flagellar Motor Protein
NIN90_RS05715	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
NIN90_RS05730	COG2350	Protein conserved in bacteria
NIN90_RS05745	COG1301	dicarboxylic acid transport
NIN90_RS05750	COG0159	tryptophan synthase activity
NIN90_RS05755	COG0133	tryptophan synthase activity
NIN90_RS05760	COG0135	phosphoribosylanthranilate isomerase activity
NIN90_RS05760	COG0134	indole-3-glycerol-phosphate synthase activity
NIN90_RS05765	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
NIN90_RS05770	COG0512	Glutamine amidotransferase of anthranilate synthase
NIN90_RS05775	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
NIN90_RS05785	COG0613	PHP domain protein
NIN90_RS05790	COG1737	Transcriptional regulator
NIN90_RS05790	COG0837	glucose binding
NIN90_RS05800	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
NIN90_RS05810	COG4145	pantothenate transmembrane transporter activity
NIN90_RS05815	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NIN90_RS05820	COG0800	Aldolase
NIN90_RS05830	COG0009	L-threonylcarbamoyladenylate synthase
NIN90_RS05835	COG1187	pseudouridine synthase activity
NIN90_RS05845	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
NIN90_RS05850	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
NIN90_RS05855	COG4988	ABC transporter
NIN90_RS05860	COG0492	ferredoxin-NADP+ reductase activity
NIN90_RS05880	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NIN90_RS05890	COG2949	membrane
NIN90_RS05915	COG0583	DNA-binding transcription factor activity
NIN90_RS05925	COG0281	malic enzyme
NIN90_RS05930	COG1643	Atp-dependent helicase
NIN90_RS05945	COG0583	DNA-binding transcription factor activity
NIN90_RS05960	COG1757	Na H antiporter
NIN90_RS05965	COG0174	glutamine synthetase
NIN90_RS05970	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
NIN90_RS05975	COG1396	sequence-specific DNA binding
NIN90_RS05975	COG1917	Cupin 2, conserved barrel domain protein
NIN90_RS05980	COG1012	belongs to the aldehyde dehydrogenase family
NIN90_RS05985	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NIN90_RS05995	COG2957	Belongs to the agmatine deiminase family
NIN90_RS06005	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
NIN90_RS06010	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
NIN90_RS06030	COG2885	chlorophyll binding
NIN90_RS06045	COG0247	lactate metabolic process
NIN90_RS06045	COG0277	FAD linked oxidase domain protein
NIN90_RS06065	COG2986	histidine ammonia-lyase
NIN90_RS06075	COG0010	Belongs to the arginase family
NIN90_RS06080	COG1228	amidohydrolase
NIN90_RS06095	COG3099	Belongs to the UPF0263 family
NIN90_RS06100	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
NIN90_RS06110	COG0417	DNA replication proofreading
NIN90_RS06115	COG2197	response regulator
NIN90_RS06120	COG0322	excinuclease ABC activity
NIN90_RS06150	COG2133	pyrroloquinoline quinone binding
NIN90_RS06170	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
NIN90_RS06175	COG0072	phenylalanine-tRNA ligase activity
NIN90_RS06175	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
NIN90_RS06180	COG0776	regulation of translation
NIN90_RS06190	COG0500	methyltransferase
NIN90_RS06220	COG5001	Diguanylate cyclase
NIN90_RS06225	COG0295	cytidine deaminase activity
NIN90_RS06230	COG1346	cytolysis
NIN90_RS06235	COG1380	Effector of murein hydrolase LrgA
NIN90_RS06240	COG2925	Exonuclease
NIN90_RS06265	COG1823	symporter activity
NIN90_RS06275	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
NIN90_RS06280	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
NIN90_RS06285	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
NIN90_RS06300	COG2988	succinylglutamate desuccinylase activity
NIN90_RS06305	COG4139	cobalamin transport
NIN90_RS06310	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
NIN90_RS06380	COG4964	Belongs to the GSP D family
NIN90_RS06425	COG1609	Transcriptional regulator
NIN90_RS06435	COG2182	Extracellular solute-binding protein
NIN90_RS06440	COG1175	transmembrane transport
NIN90_RS06445	COG3833	ABC-type maltose transport systems, permease component
NIN90_RS06455	COG1874	Beta-galactosidase
NIN90_RS06470	COG0110	maltose O-acetyltransferase activity
NIN90_RS06495	COG0583	DNA-binding transcription factor activity
NIN90_RS06505	COG1451	nucleotide metabolic process
NIN90_RS06520	COG3063	Type IV pilus biogenesis stability protein PilW
NIN90_RS06525	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
NIN90_RS06545	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NIN90_RS06560	COG3290	protein histidine kinase activity
NIN90_RS06565	COG4565	transcriptional regulatory protein
NIN90_RS06575	COG0835	chemotaxis
NIN90_RS06575	COG0784	Response regulator, receiver
NIN90_RS06585	COG1921	L-seryl-tRNASec selenium transferase activity
NIN90_RS06595	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
NIN90_RS06600	COG0651	ATP synthesis coupled electron transport
NIN90_RS06605	COG0650	Formate hydrogenlyase subunit 4
NIN90_RS06610	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
NIN90_RS06610	COG3261	NADH dehydrogenase
NIN90_RS06615	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
NIN90_RS06620	COG3260	NADH ubiquinone oxidoreductase 20
NIN90_RS06630	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
NIN90_RS06635	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
NIN90_RS06645	COG3604	Transcriptional regulator
NIN90_RS06650	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
NIN90_RS06660	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
NIN90_RS06665	COG0298	carbon dioxide binding
NIN90_RS06675	COG0309	Hydrogenase expression formation protein (HypE)
NIN90_RS06680	COG0375	protein maturation
NIN90_RS06685	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
NIN90_RS06690	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
NIN90_RS06695	COG2897	thiosulfate sulfurtransferase activity
NIN90_RS06745	COG0668	transmembrane transport
NIN90_RS06765	COG0745	RESPONSE REGULATOR receiver
NIN90_RS06770	COG5002	protein histidine kinase activity
NIN90_RS06795	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
NIN90_RS06805	COG3391	amine dehydrogenase activity
NIN90_RS06810	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NIN90_RS06815	COG1254	Belongs to the acylphosphatase family
NIN90_RS06820	COG2920	part of a sulfur-relay system
NIN90_RS06825	COG0670	Belongs to the BI1 family
NIN90_RS06830	COG1126	abc transporter atp-binding protein
NIN90_RS06835	COG0765	amino acid transport
NIN90_RS06840	COG4597	amino acid ABC transporter
NIN90_RS06845	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NIN90_RS06855	COG0561	phosphatase activity
NIN90_RS06860	COG0602	queuosine metabolic process
NIN90_RS06865	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
NIN90_RS06870	COG3005	denitrification pathway
NIN90_RS06875	COG0243	molybdopterin cofactor binding
NIN90_RS06880	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
NIN90_RS06885	COG0657	acetylesterase activity
NIN90_RS06890	COG2999	glutathione oxidoreductase activity
NIN90_RS06920	COG0443	Heat shock 70 kDa protein
NIN90_RS06935	COG3706	GGDEF domain
NIN90_RS06965	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
NIN90_RS06970	COG1643	Atp-dependent helicase
NIN90_RS07005	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
NIN90_RS07035	COG4638	Rieske (2fe-2S)
NIN90_RS07040	COG0583	DNA-binding transcription factor activity
NIN90_RS07045	COG1414	Transcriptional regulator
NIN90_RS07065	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NIN90_RS07070	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NIN90_RS07075	COG1120	ATPase activity
NIN90_RS07080	COG0583	DNA-binding transcription factor activity
NIN90_RS07085	COG4774	siderophore transport
NIN90_RS07090	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
NIN90_RS07100	COG3501	Rhs element vgr protein
NIN90_RS07125	COG1115	amino acid carrier protein
NIN90_RS07140	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NIN90_RS07145	COG1666	GTP binding
NIN90_RS07150	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NIN90_RS07170	COG2996	Protein conserved in bacteria
NIN90_RS07180	COG3008	intermembrane lipid transfer
NIN90_RS07185	COG2995	paraquat-inducible protein a
NIN90_RS07190	COG1132	(ABC) transporter
NIN90_RS07195	COG1956	GAF domain-containing protein
NIN90_RS07200	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
NIN90_RS07225	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NIN90_RS07270	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NIN90_RS07270	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NIN90_RS07305	COG1428	Deoxynucleoside kinase
NIN90_RS07380	COG4695	Portal protein
NIN90_RS07500	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
NIN90_RS07510	COG0308	aminopeptidase N
NIN90_RS07520	COG2902	Dehydrogenase
NIN90_RS07525	COG0167	dihydroorotate dehydrogenase activity
NIN90_RS07535	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
NIN90_RS07535	COG0116	Belongs to the methyltransferase superfamily
NIN90_RS07545	COG0488	(ABC) transporter
NIN90_RS07560	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
NIN90_RS07565	COG1067	ATP-dependent peptidase activity
NIN90_RS07570	COG3120	sequence-specific DNA binding
NIN90_RS07590	COG2205	protein histidine kinase activity
NIN90_RS07590	COG0784	Response regulator, receiver
NIN90_RS07605	COG3278	Belongs to the heme-copper respiratory oxidase family
NIN90_RS07620	COG2010	Cytochrome c
NIN90_RS07645	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NIN90_RS07650	COG0589	response to stress
NIN90_RS07675	COG3842	ATPase activity
NIN90_RS07685	COG1177	transmembrane transport
NIN90_RS07695	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
NIN90_RS07700	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
NIN90_RS07705	COG0004	ammonium transporteR
NIN90_RS07720	COG0437	4 iron, 4 sulfur cluster binding
NIN90_RS07735	COG3381	protein complex oligomerization
NIN90_RS07755	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
NIN90_RS07770	COG3852	Histidine kinase
NIN90_RS07775	COG2204	response regulator
NIN90_RS07785	COG4662	Binding-protein-dependent transport system inner membrane component
NIN90_RS07790	COG3842	ATPase activity
NIN90_RS07795	COG0746	molybdenum cofactor guanylyltransferase activity
NIN90_RS07800	COG0303	'Molybdopterin
NIN90_RS07810	COG1940	carbohydrate kinase activity
NIN90_RS07815	COG3148	PFAM DTW domain containing protein
NIN90_RS07825	COG0840	transmembrane signaling receptor activity
NIN90_RS07830	COG0791	NLP P60 protein
NIN90_RS07840	COG3001	Fructosamine kinase
NIN90_RS07850	COG0307	riboflavin synthase, alpha
NIN90_RS07865	COG1793	dna ligase
NIN90_RS07870	COG4667	esterase of the alpha-beta hydrolase superfamily
NIN90_RS07890	COG0848	biopolymer transport protein
NIN90_RS07895	COG0811	peptide transport
NIN90_RS07900	COG0811	peptide transport
NIN90_RS07910	COG3040	lipid binding
NIN90_RS07915	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NIN90_RS07920	COG0039	L-malate dehydrogenase activity
NIN90_RS07935	COG0395	ABC-type sugar transport system, permease component
NIN90_RS07940	COG3842	ATPase activity
NIN90_RS07945	COG1349	DNA-binding transcription factor activity
NIN90_RS07955	COG2731	YhcH YjgK YiaL family protein
NIN90_RS07975	COG0625	glutathione transferase activity
NIN90_RS07985	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
NIN90_RS07995	COG2200	EAL domain
NIN90_RS08000	COG2195	Cleaves the N-terminal amino acid of tripeptides
NIN90_RS08020	COG2814	Major facilitator Superfamily
NIN90_RS08025	COG1566	PFAM secretion protein HlyD family protein
NIN90_RS08045	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
NIN90_RS08050	COG0372	Belongs to the citrate synthase family
NIN90_RS08055	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
NIN90_RS08065	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
NIN90_RS08065	COG2169	Transcriptional regulator
NIN90_RS08100	COG1129	ABC transporter
NIN90_RS08110	COG3250	beta-galactosidase activity
NIN90_RS08120	COG2991	Protein conserved in bacteria
NIN90_RS08125	COG0778	Nitroreductase
NIN90_RS08130	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
NIN90_RS08145	COG4191	Histidine kinase
NIN90_RS08145	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NIN90_RS08150	COG0471	metal ion transport
NIN90_RS08170	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NIN90_RS08185	COG3106	COG3106 Predicted ATPase
NIN90_RS08200	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
NIN90_RS08205	COG2205	protein histidine kinase activity
NIN90_RS08205	COG0784	Response regulator, receiver
NIN90_RS08215	COG0494	nUDIX hydrolase
NIN90_RS08220	COG0814	amino acid
NIN90_RS08225	COG1760	l-serine dehydratase
NIN90_RS08230	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NIN90_RS08235	COG1136	(ABC) transporter
NIN90_RS08235	COG0577	efflux transmembrane transporter activity
NIN90_RS08255	COG0720	synthase
NIN90_RS08265	COG0017	Asparaginyl-tRNA synthetase
NIN90_RS08280	COG1448	Aminotransferase
NIN90_RS08295	COG2176	DNA-directed DNA polymerase activity
NIN90_RS08305	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NIN90_RS08310	COG1846	Transcriptional regulator
NIN90_RS08335	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
NIN90_RS08350	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NIN90_RS08355	COG3108	Peptidase M15
NIN90_RS08360	COG2989	Protein conserved in bacteria
NIN90_RS08385	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NIN90_RS08400	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NIN90_RS08405	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
NIN90_RS08435	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
NIN90_RS08440	COG3265	gluconokinase activity
NIN90_RS08455	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
NIN90_RS08465	COG0840	transmembrane signaling receptor activity
NIN90_RS08500	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
NIN90_RS08515	COG4181	ATPase activity
NIN90_RS08520	COG0534	Mate efflux family protein
NIN90_RS08525	COG0702	epimerase
NIN90_RS08535	COG2814	Major facilitator Superfamily
NIN90_RS08545	COG1061	Type III restriction enzyme res subunit
NIN90_RS08560	COG0642	Histidine kinase
NIN90_RS08565	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
NIN90_RS08595	COG0679	Auxin Efflux Carrier
NIN90_RS08610	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
NIN90_RS08625	COG3153	acetyltransferase
NIN90_RS08635	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
NIN90_RS08640	COG3069	C4-dicarboxylate transmembrane transporter activity
NIN90_RS08655	COG1737	Transcriptional regulator
NIN90_RS08670	COG1278	Cold shock
NIN90_RS08680	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
NIN90_RS08690	COG0814	amino acid
NIN90_RS08700	COG1131	(ABC) transporter
NIN90_RS08705	COG0842	Transport permease protein
NIN90_RS08715	COG3313	Fe-S protein
NIN90_RS08725	COG4134	Bacterial extracellular solute-binding protein
NIN90_RS08730	COG4135	transport system, permease component
NIN90_RS08735	COG4136	ATPase activity
NIN90_RS08740	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
NIN90_RS08755	COG0564	pseudouridine synthase activity
NIN90_RS08765	COG0733	neurotransmitter:sodium symporter activity
NIN90_RS08775	COG0626	cystathionine gamma-synthase activity
NIN90_RS08780	COG2818	Glycosylase
NIN90_RS08795	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NIN90_RS08810	COG1842	Phage shock protein A
NIN90_RS08815	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
NIN90_RS08825	COG4168	peptide transport system, permease
NIN90_RS08830	COG4171	peptide transport system, permease
NIN90_RS08840	COG4172	Belongs to the ABC transporter superfamily
NIN90_RS08855	COG1227	inorganic diphosphatase activity
NIN90_RS08875	COG0243	molybdopterin cofactor binding
NIN90_RS08880	COG3005	denitrification pathway
NIN90_RS08885	COG4459	periplasmic nitrate reductase
NIN90_RS08890	COG0390	transport system, permease component
NIN90_RS08895	COG2116	formate transmembrane transporter activity
NIN90_RS08910	COG0583	DNA-binding transcription factor activity
NIN90_RS08915	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
NIN90_RS08920	COG1434	Gram-negative-bacterium-type cell wall biogenesis
NIN90_RS08925	COG1435	thymidine kinase activity
NIN90_RS08935	COG1801	Protein of unknown function DUF72
NIN90_RS08940	COG4106	trans-aconitate 2-methyltransferase activity
NIN90_RS08945	COG0500	methyltransferase
NIN90_RS08950	COG4067	protein conserved in archaea
NIN90_RS08950	COG0189	ligase activity
NIN90_RS08970	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
NIN90_RS08975	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
NIN90_RS08980	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
NIN90_RS08985	COG1434	Gram-negative-bacterium-type cell wall biogenesis
NIN90_RS08990	COG0745	RESPONSE REGULATOR receiver
NIN90_RS08995	COG3381	protein complex oligomerization
NIN90_RS09000	COG1609	Transcriptional regulator
NIN90_RS09005	COG3070	regulator of competence-specific genes
NIN90_RS09025	COG0297	glycogen (starch) synthase activity
NIN90_RS09030	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
NIN90_RS09040	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NIN90_RS09060	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
NIN90_RS09065	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
NIN90_RS09070	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
NIN90_RS09075	COG0542	response to heat
NIN90_RS09080	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
NIN90_RS09085	COG1278	Cold shock
NIN90_RS09095	COG2223	nitrite transmembrane transporter activity
NIN90_RS09100	COG1695	Transcriptional regulator
NIN90_RS09110	COG1187	pseudouridine synthase activity
NIN90_RS09115	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
NIN90_RS09115	COG0140	phosphoribosyl-ATP diphosphatase activity
NIN90_RS09125	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
NIN90_RS09130	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
NIN90_RS09135	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
NIN90_RS09135	COG0131	Imidazoleglycerol-phosphate dehydratase
NIN90_RS09140	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
NIN90_RS09145	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
NIN90_RS09150	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
NIN90_RS09155	COG2204	response regulator
NIN90_RS09160	COG1757	Na H antiporter
NIN90_RS09165	COG2916	Histone family protein nucleoid-structuring protein H-NS
NIN90_RS09170	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NIN90_RS09175	COG0482	sulfurtransferase activity
NIN90_RS09180	COG2915	High frequency lysogenization protein hflD homolog
NIN90_RS09185	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
NIN90_RS09205	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
NIN90_RS09220	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS09230	COG0501	Belongs to the peptidase M48B family
NIN90_RS09240	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
NIN90_RS09245	COG2226	methyltransferase
NIN90_RS09255	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
NIN90_RS09260	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
NIN90_RS09270	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NIN90_RS09270	COG2146	nitrite reductase [NAD(P)H] activity
NIN90_RS09275	COG1116	anion transmembrane transporter activity
NIN90_RS09280	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NIN90_RS09285	COG1116	anion transmembrane transporter activity
NIN90_RS09285	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NIN90_RS09300	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NIN90_RS09300	COG1648	precorrin-2 dehydrogenase activity
NIN90_RS09305	COG0243	molybdopterin cofactor binding
NIN90_RS09315	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
NIN90_RS09320	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
NIN90_RS09325	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
NIN90_RS09330	COG0653	protein targeting
NIN90_RS09335	COG2165	general secretion pathway protein
NIN90_RS09345	COG3706	GGDEF domain
NIN90_RS09355	COG4120	Belongs to the binding-protein-dependent transport system permease family
NIN90_RS09365	COG3092	negative regulation of chromosome organization
NIN90_RS09370	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
NIN90_RS09375	COG0857	belongs to the CobB CobQ family
NIN90_RS09375	COG0280	phosphate acetyltransferase
NIN90_RS09380	COG3174	membrane
NIN90_RS09385	COG0435	Glutathione S-transferase
NIN90_RS09400	COG0444	Belongs to the ABC transporter superfamily
NIN90_RS09405	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NIN90_RS09410	COG0601	transmembrane transport
NIN90_RS09440	COG0204	Acyl-transferase
NIN90_RS09440	COG0318	PFAM AMP-dependent synthetase and ligase
NIN90_RS09445	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NIN90_RS09450	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
NIN90_RS09470	COG1216	Glycosyl transferase, family 2
NIN90_RS09475	COG2986	histidine ammonia-lyase
NIN90_RS09500	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NIN90_RS09510	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS09530	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NIN90_RS09540	COG5001	Diguanylate cyclase
NIN90_RS09540	COG2203	Gaf domain
NIN90_RS09540	COG3706	GGDEF domain
NIN90_RS09540	COG4251	negative regulation of phosphorylation
NIN90_RS09545	COG1621	beta-fructofuranosidase activity
NIN90_RS09555	COG1263	PTS System
NIN90_RS09555	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NIN90_RS09565	COG0745	RESPONSE REGULATOR receiver
NIN90_RS09575	COG3708	Transcriptional regulator
NIN90_RS09575	COG2207	Transcriptional regulator
NIN90_RS09580	COG2814	Major facilitator Superfamily
NIN90_RS09585	COG1566	PFAM secretion protein HlyD family protein
NIN90_RS09590	COG1538	Outer membrane efflux protein
NIN90_RS09600	COG0747	negative chemotaxis
NIN90_RS09605	COG0601	transmembrane transport
NIN90_RS09610	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NIN90_RS09615	COG4172	Belongs to the ABC transporter superfamily
NIN90_RS09625	COG1741	Belongs to the pirin family
NIN90_RS09630	COG2723	6-phospho-beta-galactosidase activity
NIN90_RS09635	COG1609	Transcriptional regulator
NIN90_RS09645	COG1120	ATPase activity
NIN90_RS09650	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NIN90_RS09660	COG4774	siderophore transport
NIN90_RS09660	COG1629	transport
NIN90_RS09665	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NIN90_RS09670	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NIN90_RS09675	COG4592	Periplasmic binding protein
NIN90_RS09690	COG3433	isochorismatase activity
NIN90_RS09690	COG2226	methyltransferase
NIN90_RS09690	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
NIN90_RS09695	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NIN90_RS09700	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS09705	COG1169	isochorismate synthase
NIN90_RS09710	COG1021	2,3-dihydroxybenzoate-AMP ligase
NIN90_RS09730	COG2249	NAD(P)H dehydrogenase (quinone) activity
NIN90_RS09745	COG3275	phosphorelay sensor kinase activity
NIN90_RS09750	COG3279	Response regulator of the LytR AlgR family
NIN90_RS09755	COG2223	nitrite transmembrane transporter activity
NIN90_RS09780	COG1294	oxidase, subunit
NIN90_RS09785	COG1271	oxidase subunit
NIN90_RS09790	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NIN90_RS09825	COG4566	intracellular signal transduction
NIN90_RS09830	COG2194	sulfuric ester hydrolase activity
NIN90_RS09835	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
NIN90_RS09840	COG1368	sulfuric ester hydrolase activity
NIN90_RS09845	COG0513	Belongs to the DEAD box helicase family
NIN90_RS09865	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
NIN90_RS09870	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
NIN90_RS09890	COG2207	Transcriptional regulator
NIN90_RS09895	COG1881	PFAM PEBP family protein
NIN90_RS09915	COG2723	6-phospho-beta-galactosidase activity
NIN90_RS09920	COG1263	PTS System
NIN90_RS09920	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NIN90_RS09920	COG2190	(PTS) system
NIN90_RS09925	COG3711	transcriptional antiterminator
NIN90_RS09930	COG0679	Auxin Efflux Carrier
NIN90_RS09935	COG0583	DNA-binding transcription factor activity
NIN90_RS09945	COG5002	protein histidine kinase activity
NIN90_RS09945	COG5001	Diguanylate cyclase
NIN90_RS09960	COG3126	Type III secretion system lipoprotein chaperone (YscW)
NIN90_RS09965	COG1946	Acyl-CoA thioesterase
NIN90_RS09970	COG1522	sequence-specific DNA binding
NIN90_RS10015	COG2885	chlorophyll binding
NIN90_RS10015	COG3047	cAMP biosynthetic process
NIN90_RS10045	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
NIN90_RS10060	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NIN90_RS10065	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
NIN90_RS10085	COG1580	Controls the rotational direction of flagella during chemotaxis
NIN90_RS10090	COG1191	sigma factor activity
NIN90_RS10095	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
NIN90_RS10100	COG1360	Flagellar Motor Protein
NIN90_RS10110	COG3015	lipoprotein NlpE involved in copper resistance
NIN90_RS10155	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
NIN90_RS10185	COG4786	Flagellar basal body rod
NIN90_RS10185	COG1256	bacterial-type flagellum assembly
NIN90_RS10195	COG1706	bacterial-type flagellum-dependent cell motility
NIN90_RS10200	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
NIN90_RS10205	COG4786	Flagellar basal body rod
NIN90_RS10215	COG1749	Flagellar hook protein flgE
NIN90_RS10220	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
NIN90_RS10225	COG1558	bacterial-type flagellum-dependent cell motility
NIN90_RS10230	COG1815	bacterial-type flagellum-dependent cell motility
NIN90_RS10250	COG1388	LysM domain
NIN90_RS10250	COG0741	lytic transglycosylase activity
NIN90_RS10255	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
NIN90_RS10275	COG0477	Major facilitator Superfamily
NIN90_RS10280	COG2855	membrane
NIN90_RS10300	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
NIN90_RS10310	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
NIN90_RS10320	COG0436	Aminotransferase
NIN90_RS10325	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
NIN90_RS10330	COG0232	Belongs to the dGTPase family. Type 2 subfamily
NIN90_RS10350	COG0616	signal peptide processing
NIN90_RS10355	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS10370	COG0587	DNA-directed DNA polymerase activity
NIN90_RS10375	COG0784	Response regulator, receiver
NIN90_RS10375	COG0835	chemotaxis
NIN90_RS10380	COG1940	carbohydrate kinase activity
NIN90_RS10385	COG0469	pyruvate kinase activity
NIN90_RS10390	COG4667	esterase of the alpha-beta hydrolase superfamily
NIN90_RS10405	COG0733	neurotransmitter:sodium symporter activity
NIN90_RS10420	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NIN90_RS10420	COG1263	PTS System
NIN90_RS10430	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
NIN90_RS10430	COG1263	PTS System
NIN90_RS10430	COG2190	(PTS) system
NIN90_RS10435	COG0084	hydrolase, TatD family'
NIN90_RS10440	COG0470	DNA polymerase III
NIN90_RS10445	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
NIN90_RS10450	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
NIN90_RS10455	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
NIN90_RS10460	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NIN90_RS10480	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NIN90_RS10485	COG0416	fatty acid biosynthetic process
NIN90_RS10490	COG0333	Belongs to the bacterial ribosomal protein bL32 family
NIN90_RS10495	COG1399	metal-binding, possibly nucleic acid-binding protein
NIN90_RS10500	COG0424	maF-like protein
NIN90_RS10505	COG0564	pseudouridine synthase activity
NIN90_RS10510	COG1530	ribonuclease E activity
NIN90_RS10520	COG0659	secondary active sulfate transmembrane transporter activity
NIN90_RS10530	COG1012	belongs to the aldehyde dehydrogenase family
NIN90_RS10530	COG1454	alcohol dehydrogenase
NIN90_RS10535	COG2095	MarC family integral membrane protein
NIN90_RS10540	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
NIN90_RS10545	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
NIN90_RS10550	COG1757	Na H antiporter
NIN90_RS10560	COG3081	Nucleoid-associated protein
NIN90_RS10565	COG3082	Protein of unknown function (DUF1414)
NIN90_RS10570	COG3083	sulfuric ester hydrolase activity
NIN90_RS10585	COG2814	Major facilitator Superfamily
NIN90_RS10605	COG1448	Aminotransferase
NIN90_RS10615	COG0123	including yeast histone deacetylase and acetoin utilization protein
NIN90_RS10630	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
NIN90_RS10670	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NIN90_RS10675	COG2159	amidohydrolase
NIN90_RS10680	COG0583	DNA-binding transcription factor activity
NIN90_RS10695	COG0667	Aldo Keto reductase
NIN90_RS10700	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
NIN90_RS10720	COG3384	dioxygenase
NIN90_RS10730	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NIN90_RS10735	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
NIN90_RS10755	COG2853	Lipoprotein
NIN90_RS10770	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NIN90_RS10775	COG1138	Cytochrome C-type biogenesis protein
NIN90_RS10780	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
NIN90_RS10785	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NIN90_RS10790	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NIN90_RS10795	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
NIN90_RS10800	COG4133	protoheme IX ABC transporter activity
NIN90_RS10810	COG0835	chemotaxis
NIN90_RS10820	COG1192	Involved in chromosome partitioning
NIN90_RS10825	COG2201	protein-glutamate methylesterase activity
NIN90_RS10830	COG2198	Histidine kinase
NIN90_RS10830	COG0643	Histidine kinase
NIN90_RS10830	COG0784	Response regulator, receiver
NIN90_RS10835	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
NIN90_RS10865	COG2062	phosphohistidine phosphatase, SixA
NIN90_RS10875	COG3102	Protein conserved in bacteria
NIN90_RS10900	COG1918	ferrous iron import across plasma membrane
NIN90_RS10905	COG2207	Transcriptional regulator
NIN90_RS10910	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
NIN90_RS10915	COG1121	(ABC) transporter
NIN90_RS10920	COG1108	ABC-type Mn2 Zn2 transport systems permease components
NIN90_RS10935	COG0508	dehydrogenase complex catalyzes the overall conversion of
NIN90_RS10940	COG0567	Dehydrogenase, E1 component
NIN90_RS10950	COG1053	succinate dehydrogenase
NIN90_RS10955	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
NIN90_RS10970	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
NIN90_RS10980	COG0033	Phosphoglucomutase
NIN90_RS10985	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
NIN90_RS10990	COG0596	Alpha beta hydrolase
NIN90_RS11005	COG1346	cytolysis
NIN90_RS11010	COG1380	Effector of murein hydrolase LrgA
NIN90_RS11015	COG0583	DNA-binding transcription factor activity
NIN90_RS11025	COG0735	belongs to the Fur family
NIN90_RS11030	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
NIN90_RS11035	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NIN90_RS11040	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
NIN90_RS11045	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NIN90_RS11045	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
NIN90_RS11060	COG3101	peptidyl-lysine hydroxylation
NIN90_RS11065	COG2860	membrane
NIN90_RS11070	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
NIN90_RS11075	COG2890	protein-(glutamine-N5) methyltransferase activity
NIN90_RS11080	COG2840	Smr protein MutS2
NIN90_RS11095	COG1987	bacterial-type flagellum assembly
NIN90_RS11145	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
NIN90_RS11155	COG1677	Flagellar hook-basal body complex protein FliE
NIN90_RS11175	COG1516	flagellar protein fliS
NIN90_RS11185	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
NIN90_RS11190	COG1334	flagellar protein FlaG
NIN90_RS11195	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NIN90_RS11210	COG2837	iron assimilation
NIN90_RS11230	COG0516	GMP reductase activity
NIN90_RS11230	COG0517	IMP dehydrogenase activity
NIN90_RS11245	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
NIN90_RS11250	COG1085	galactose-1-phosphate uridylyltransferase
NIN90_RS11255	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
NIN90_RS11265	COG1393	Belongs to the ArsC family
NIN90_RS11275	COG1876	peptidase activity
NIN90_RS11285	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
NIN90_RS11295	COG2716	regulation of RNA biosynthetic process
NIN90_RS11325	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
NIN90_RS11385	COG4783	chaperone-mediated protein folding
NIN90_RS11390	COG1393	Belongs to the ArsC family
NIN90_RS11410	COG2233	PERMEase
NIN90_RS11415	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
NIN90_RS11420	COG0737	Belongs to the 5'-nucleotidase family
NIN90_RS11425	COG2877	3-deoxy-8-phosphooctulonate synthase activity
NIN90_RS11430	COG2912	Transglutaminase-like superfamily
NIN90_RS11440	COG2890	protein-(glutamine-N5) methyltransferase activity
NIN90_RS11445	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
NIN90_RS11450	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
NIN90_RS11455	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
NIN90_RS11460	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
NIN90_RS11465	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
NIN90_RS11470	COG0193	aminoacyl-tRNA hydrolase activity
NIN90_RS11570	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NIN90_RS11575	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
NIN90_RS11585	COG1705	Flagellar rod assembly protein muramidase FlgJ
NIN90_RS11585	COG3951	Flagellar rod assembly protein muramidase FlgJ
NIN90_RS11590	COG1706	bacterial-type flagellum-dependent cell motility
NIN90_RS11595	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
NIN90_RS11605	COG4787	bacterial-type flagellum-dependent cell motility
NIN90_RS11625	COG1815	bacterial-type flagellum-dependent cell motility
NIN90_RS11630	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
NIN90_RS11635	COG0784	Response regulator, receiver
NIN90_RS11635	COG0835	chemotaxis
NIN90_RS11645	COG2747	anti-sigma28 factor FlgM
NIN90_RS11685	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NIN90_RS11690	COG2217	Heavy metal translocating P-type atpase
NIN90_RS11690	COG2608	mercury ion transmembrane transporter activity
NIN90_RS11725	COG2840	Smr protein MutS2
NIN90_RS11730	COG1187	pseudouridine synthase activity
NIN90_RS11735	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
NIN90_RS11740	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
NIN90_RS11745	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
NIN90_RS11750	COG0121	glutamine amidotransferase
NIN90_RS11755	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
NIN90_RS11760	COG1960	acyl-CoA dehydrogenase activity
NIN90_RS11770	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
NIN90_RS11775	COG0328	RNA-DNA hybrid ribonuclease activity
NIN90_RS11780	COG2226	methyltransferase
NIN90_RS11785	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
NIN90_RS11790	COG0741	lytic transglycosylase activity
NIN90_RS11790	COG1388	LysM domain
NIN90_RS11800	COG3021	interspecies interaction between organisms
NIN90_RS11805	COG0347	Belongs to the P(II) protein family
NIN90_RS11815	COG0037	tRNA processing
NIN90_RS11820	COG0825	malonyl-CoA metabolic process
NIN90_RS11825	COG0587	DNA-directed DNA polymerase activity
NIN90_RS11830	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
NIN90_RS11845	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
NIN90_RS11850	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
NIN90_RS11855	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
NIN90_RS11865	COG0750	zinc metalloprotease
NIN90_RS11870	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
NIN90_RS11875	COG0575	Belongs to the CDS family
NIN90_RS11880	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
NIN90_RS11885	COG0233	cytoplasmic translational termination
NIN90_RS11895	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
NIN90_RS11900	COG0052	Belongs to the universal ribosomal protein uS2 family
NIN90_RS11905	COG0024	Methionine aminopeptidase
NIN90_RS11910	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
NIN90_RS11920	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
NIN90_RS11925	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
NIN90_RS11930	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
NIN90_RS11935	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
NIN90_RS11950	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NIN90_RS11950	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
NIN90_RS11955	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
NIN90_RS11960	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
NIN90_RS11975	COG1073	alpha beta
NIN90_RS11980	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
NIN90_RS11985	COG2252	PERMEase
NIN90_RS11990	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
NIN90_RS12000	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
NIN90_RS12010	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
NIN90_RS12015	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NIN90_RS12020	COG2195	Cleaves the N-terminal amino acid of tripeptides
NIN90_RS12025	COG0189	ligase activity
NIN90_RS12025	COG4067	protein conserved in archaea
NIN90_RS12030	COG0189	ligase activity
NIN90_RS12040	COG0733	neurotransmitter:sodium symporter activity
NIN90_RS12045	COG4251	negative regulation of phosphorylation
NIN90_RS12045	COG5001	Diguanylate cyclase
NIN90_RS12045	COG2203	Gaf domain
NIN90_RS12045	COG3706	GGDEF domain
NIN90_RS12055	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NIN90_RS12070	COG1477	protein flavinylation
NIN90_RS12075	COG2871	sodium ion transport
NIN90_RS12080	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NIN90_RS12085	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NIN90_RS12095	COG1805	sodium ion transport
NIN90_RS12100	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
NIN90_RS12105	COG0271	Belongs to the BolA IbaG family
NIN90_RS12180	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NIN90_RS12190	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NIN90_RS12195	COG0590	tRNA wobble adenosine to inosine editing
NIN90_RS12205	COG0542	response to heat
NIN90_RS12215	COG0564	pseudouridine synthase activity
NIN90_RS12220	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
NIN90_RS12225	COG0741	lytic transglycosylase activity
NIN90_RS12230	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
NIN90_RS12235	COG0077	Prephenate dehydratase
NIN90_RS12235	COG1605	Chorismate mutase
NIN90_RS12240	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
NIN90_RS12245	COG5001	Diguanylate cyclase
NIN90_RS12250	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
NIN90_RS12255	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
NIN90_RS12265	COG0488	(ABC) transporter
NIN90_RS12275	COG0287	Prephenate dehydrogenase
NIN90_RS12275	COG1605	Chorismate mutase
NIN90_RS12280	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NIN90_RS12285	COG3275	phosphorelay sensor kinase activity
NIN90_RS12290	COG3279	Response regulator of the LytR AlgR family
NIN90_RS12300	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
NIN90_RS12305	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
NIN90_RS12320	COG1966	Carbon starvation protein
NIN90_RS12325	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
NIN90_RS12330	COG1047	Peptidyl-prolyl cis-trans
NIN90_RS12335	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
NIN90_RS12340	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
NIN90_RS12345	COG0196	riboflavin kinase activity
NIN90_RS12350	COG0728	peptidoglycan biosynthetic process
NIN90_RS12355	COG0268	Binds directly to 16S ribosomal RNA
NIN90_RS12360	COG0640	Transcriptional regulator
NIN90_RS12365	COG0583	DNA-binding transcription factor activity
NIN90_RS12370	COG1283	sodium-dependent phosphate transmembrane transporter activity
NIN90_RS12375	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
NIN90_RS12385	COG0730	response to heat
NIN90_RS12395	COG0494	nUDIX hydrolase
NIN90_RS12410	COG0667	Aldo Keto reductase
NIN90_RS12420	COG2204	response regulator
NIN90_RS12425	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
NIN90_RS12440	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
NIN90_RS12445	COG0513	Belongs to the DEAD box helicase family
NIN90_RS12470	COG3153	acetyltransferase
NIN90_RS12475	COG3154	lipid carrier protein
NIN90_RS12485	COG0826	peptidase U32
NIN90_RS12490	COG0826	peptidase U32
NIN90_RS12495	COG0534	Mate efflux family protein
NIN90_RS12515	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
NIN90_RS12525	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
NIN90_RS12530	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
NIN90_RS12535	COG0195	Participates in both transcription termination and antitermination
NIN90_RS12540	COG0779	Required for maturation of 30S ribosomal subunits
NIN90_RS12555	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
NIN90_RS12560	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NIN90_RS12565	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
NIN90_RS12570	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NIN90_RS12575	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
NIN90_RS12580	COG1534	Rna-binding protein
NIN90_RS12585	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NIN90_RS12590	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
NIN90_RS12595	COG2027	D-alanyl-D-alanine carboxypeptidase
NIN90_RS12600	COG2239	Acts as a magnesium transporter
NIN90_RS12610	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
NIN90_RS12615	COG0739	heme binding
NIN90_RS12630	COG0316	Belongs to the HesB IscA family
NIN90_RS12635	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
NIN90_RS12640	COG0628	permease
NIN90_RS12645	COG2813	Specifically methylates the guanine in position
NIN90_RS12650	COG2205	protein histidine kinase activity
NIN90_RS12650	COG0784	Response regulator, receiver
NIN90_RS12655	COG0747	negative chemotaxis
NIN90_RS12665	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
NIN90_RS12670	COG0444	Belongs to the ABC transporter superfamily
NIN90_RS12675	COG4608	Belongs to the ABC transporter superfamily
NIN90_RS12685	COG2971	BadF BadG BcrA BcrD
NIN90_RS12700	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NIN90_RS12705	COG3842	ATPase activity
NIN90_RS12715	COG1840	ABC-type Fe3 transport system, periplasmic component
NIN90_RS12720	COG0004	ammonium transporteR
NIN90_RS12725	COG0347	Belongs to the P(II) protein family
NIN90_RS12730	COG3112	Uncharacterised protein family (UPF0231)
NIN90_RS12735	COG1049	propionate catabolic process, 2-methylcitrate cycle
NIN90_RS12740	COG1752	Esterase of the alpha-beta hydrolase superfamily
NIN90_RS12745	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NIN90_RS12750	COG1643	Atp-dependent helicase
NIN90_RS12755	COG1489	DNA binding
NIN90_RS12760	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
NIN90_RS12765	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
NIN90_RS12775	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
NIN90_RS12780	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
NIN90_RS12785	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
NIN90_RS12790	COG0842	Transport permease protein
NIN90_RS12795	COG1131	(ABC) transporter
NIN90_RS12800	COG0288	reversible hydration of carbon dioxide
NIN90_RS12815	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NIN90_RS12820	COG0508	dehydrogenase complex catalyzes the overall conversion of
NIN90_RS12825	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
NIN90_RS12830	COG2186	Transcriptional regulator
NIN90_RS12835	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
NIN90_RS12840	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NIN90_RS12845	COG4974	Belongs to the 'phage' integrase family
NIN90_RS12870	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NIN90_RS12875	COG1459	type II secretion system
NIN90_RS12885	COG0237	dephospho-CoA kinase activity
NIN90_RS12890	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
NIN90_RS12910	COG3150	esterase
NIN90_RS12920	COG3151	Protein conserved in bacteria
NIN90_RS12925	COG0494	nUDIX hydrolase
NIN90_RS12930	COG1538	Outer membrane efflux protein
NIN90_RS12935	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
NIN90_RS12935	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
NIN90_RS12940	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
NIN90_RS12950	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
NIN90_RS12955	COG3025	triphosphatase activity
NIN90_RS12960	COG1392	Phosphate transport regulator
NIN90_RS12965	COG0306	phosphate transporter
NIN90_RS12970	COG4991	sh3 domain protein
NIN90_RS12980	COG3267	Type II secretory pathway component ExeA
NIN90_RS12980	COG3409	Peptidoglycan-binding domain 1 protein
NIN90_RS12985	COG0617	tRNA 3'-terminal CCA addition
NIN90_RS12990	COG0148	phosphopyruvate hydratase activity
NIN90_RS12995	COG0504	CTP synthase activity
NIN90_RS13000	COG3956	TIGRFAM MazG family protein
NIN90_RS13005	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NIN90_RS13010	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
NIN90_RS13025	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
NIN90_RS13030	COG1381	Involved in DNA repair and RecF pathway recombination
NIN90_RS13035	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
NIN90_RS13050	COG0481	GTPase activity
NIN90_RS13055	COG3086	response to oxidative stress
NIN90_RS13070	COG1595	DNA-templated transcription, initiation
NIN90_RS13075	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
NIN90_RS13085	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
NIN90_RS13105	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NIN90_RS13110	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
NIN90_RS13115	COG3079	Belongs to the UPF0149 family
NIN90_RS13120	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
NIN90_RS13130	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
NIN90_RS13140	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
NIN90_RS13145	COG0440	acetolactate synthase activity
NIN90_RS13150	COG0028	Belongs to the TPP enzyme family
NIN90_RS13155	COG1022	Amp-dependent synthetase and ligase
NIN90_RS13160	COG0583	DNA-binding transcription factor activity
NIN90_RS13185	COG0473	3-isopropylmalate dehydrogenase activity
NIN90_RS13190	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
NIN90_RS13195	COG0066	3-isopropylmalate dehydratase activity
NIN90_RS13240	COG3437	response regulator, receiver
NIN90_RS13265	COG3706	GGDEF domain
NIN90_RS13275	COG0795	lipopolysaccharide-transporting ATPase activity
NIN90_RS13280	COG0795	lipopolysaccharide-transporting ATPase activity
NIN90_RS13285	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
NIN90_RS13295	COG0525	valine-tRNA ligase activity
NIN90_RS13300	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NIN90_RS13305	COG0564	pseudouridine synthase activity
NIN90_RS13320	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
NIN90_RS13325	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
NIN90_RS13330	COG0540	Belongs to the ATCase OTCase family
NIN90_RS13335	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
NIN90_RS13340	COG0251	oxidation-reduction process
NIN90_RS13345	COG0204	Acyl-transferase
NIN90_RS13355	COG5007	Belongs to the BolA IbaG family
NIN90_RS13360	COG3113	response to antibiotic
NIN90_RS13365	COG2854	intermembrane phospholipid transfer
NIN90_RS13370	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NIN90_RS13375	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
NIN90_RS13380	COG1127	ABC transporter
NIN90_RS13390	COG0517	IMP dehydrogenase activity
NIN90_RS13390	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
NIN90_RS13395	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
NIN90_RS13405	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
NIN90_RS13410	COG1137	ATPase activity
NIN90_RS13420	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
NIN90_RS13425	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
NIN90_RS13430	COG1660	Displays ATPase and GTPase activities
NIN90_RS13435	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NIN90_RS13440	COG2239	Acts as a magnesium transporter
NIN90_RS13445	COG0312	modulator of DNA gyrase
NIN90_RS13450	COG3028	Belongs to the UPF0307 family
NIN90_RS13455	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
NIN90_RS13460	COG1178	ABC-type Fe3 transport system permease component
NIN90_RS13465	COG4143	(ABC) transporter
NIN90_RS13470	COG0163	prenyltransferase activity
NIN90_RS13475	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
NIN90_RS13480	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
NIN90_RS13485	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
NIN90_RS13495	COG2105	PFAM AIG2 family protein
NIN90_RS13505	COG0729	surface antigen
NIN90_RS13510	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NIN90_RS13515	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
NIN90_RS13530	COG0577	efflux transmembrane transporter activity
NIN90_RS13530	COG1136	(ABC) transporter
NIN90_RS13550	COG0529	Catalyzes the synthesis of activated sulfate
NIN90_RS13555	COG3273	potassium ion transport
NIN90_RS13555	COG0471	metal ion transport
NIN90_RS13560	COG2895	sulfate adenylyltransferase (ATP) activity
NIN90_RS13565	COG0175	sulfate reduction
NIN90_RS13570	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NIN90_RS13570	COG1648	precorrin-2 dehydrogenase activity
NIN90_RS13575	COG0737	Belongs to the 5'-nucleotidase family
NIN90_RS13585	COG0513	Belongs to the DEAD box helicase family
NIN90_RS13590	COG2153	protein acetylation
NIN90_RS13600	COG3061	Opacity-associated protein A
NIN90_RS13605	COG0545	Peptidyl-prolyl cis-trans isomerase
NIN90_RS13615	COG0203	ribosomal protein L17
NIN90_RS13620	COG0202	RNA polymerase activity
NIN90_RS13625	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
NIN90_RS13630	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
NIN90_RS13635	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
NIN90_RS13640	COG0257	Belongs to the bacterial ribosomal protein bL36 family
NIN90_RS13645	COG0201	protein transport
NIN90_RS13650	COG0200	Binds to the 23S rRNA
NIN90_RS13655	COG1841	ribosomal large subunit assembly
NIN90_RS13665	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
NIN90_RS13675	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
NIN90_RS13680	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
NIN90_RS13685	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
NIN90_RS13690	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
NIN90_RS13695	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
NIN90_RS13700	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
NIN90_RS13705	COG0255	Belongs to the universal ribosomal protein uL29 family
NIN90_RS13710	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
NIN90_RS13715	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
NIN90_RS13720	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
NIN90_RS13725	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
NIN90_RS13730	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
NIN90_RS13735	COG0089	rRNA binding
NIN90_RS13740	COG0088	Forms part of the polypeptide exit tunnel
NIN90_RS13745	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
NIN90_RS13750	COG0051	transcription antitermination factor activity, RNA binding
NIN90_RS13755	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NIN90_RS13760	COG0557	exoribonuclease II activity
NIN90_RS13765	COG3083	sulfuric ester hydrolase activity
NIN90_RS13770	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
NIN90_RS13775	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
NIN90_RS13785	COG1047	Peptidyl-prolyl cis-trans
NIN90_RS13790	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
NIN90_RS13800	COG2249	NAD(P)H dehydrogenase (quinone) activity
NIN90_RS13805	COG0488	(ABC) transporter
NIN90_RS13815	COG0429	hydrolase of the alpha beta-hydrolase fold
NIN90_RS13825	COG3954	Phosphoribulokinase
NIN90_RS13840	COG1012	belongs to the aldehyde dehydrogenase family
NIN90_RS13850	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
NIN90_RS13855	COG0512	Glutamine amidotransferase of anthranilate synthase
NIN90_RS13865	COG0180	Tryptophanyl-tRNA synthetase
NIN90_RS13875	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
NIN90_RS13880	COG0338	D12 class N6 adenine-specific DNA methyltransferase
NIN90_RS13890	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
NIN90_RS13925	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
NIN90_RS13935	COG0678	peroxiredoxin activity
NIN90_RS13935	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
NIN90_RS13945	COG0165	Argininosuccinate lyase
NIN90_RS13945	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
NIN90_RS13950	COG0137	argininosuccinate synthase activity
NIN90_RS13955	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
NIN90_RS13960	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
NIN90_RS13965	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
NIN90_RS13970	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
NIN90_RS13980	COG1045	serine acetyltransferase
NIN90_RS13990	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
NIN90_RS13995	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NIN90_RS14000	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
NIN90_RS14005	COG1053	succinate dehydrogenase
NIN90_RS14010	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
NIN90_RS14015	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
NIN90_RS14025	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
NIN90_RS14030	COG1509	lysine 2,3-aminomutase activity
NIN90_RS14035	COG1285	pathogenesis
NIN90_RS14045	COG1119	ATPase activity
NIN90_RS14050	COG0459	protein refolding
NIN90_RS14080	COG0149	triose-phosphate isomerase activity
NIN90_RS14085	COG0534	Mate efflux family protein
NIN90_RS14090	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
NIN90_RS14095	COG1575	Belongs to the MenA family. Type 1 subfamily
NIN90_RS14100	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
NIN90_RS14105	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
NIN90_RS14115	COG1609	Transcriptional regulator
NIN90_RS14120	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
NIN90_RS14130	COG0281	malic enzyme
NIN90_RS14135	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
NIN90_RS14140	COG0626	cystathionine gamma-synthase activity
NIN90_RS14145	COG0460	homoserine dehydrogenase
NIN90_RS14145	COG0527	aspartate kinase activity
NIN90_RS14150	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
NIN90_RS14155	COG3074	FtsZ-dependent cytokinesis
NIN90_RS14160	COG1494	fructose-1,6-bisphosphatase
NIN90_RS14165	COG0205	6-phosphofructokinase activity
NIN90_RS14170	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
NIN90_RS14180	COG0745	RESPONSE REGULATOR receiver
NIN90_RS14185	COG2205	protein histidine kinase activity
NIN90_RS14190	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
NIN90_RS14195	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
NIN90_RS14210	COG1027	Aspartate ammonia-lyase
NIN90_RS14215	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
NIN90_RS14220	COG1288	antiporter activity
NIN90_RS14235	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
NIN90_RS14240	COG0540	Belongs to the ATCase OTCase family
NIN90_RS14245	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
NIN90_RS14255	COG4232	protein-disulfide reductase activity
NIN90_RS14280	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NIN90_RS14285	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
NIN90_RS14290	COG0194	GDP metabolic process
NIN90_RS14295	COG1758	RNA polymerase activity
NIN90_RS14300	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
NIN90_RS14310	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
NIN90_RS14315	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
NIN90_RS14320	COG2233	PERMEase
NIN90_RS14335	COG0800	Aldolase
NIN90_RS14340	COG2610	gluconate transmembrane transporter activity
NIN90_RS14345	COG3265	gluconokinase activity
NIN90_RS14350	COG0129	dihydroxy-acid dehydratase activity
NIN90_RS14355	COG1609	Transcriptional regulator
NIN90_RS14360	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NIN90_RS14370	COG2183	response to ionizing radiation
NIN90_RS14380	COG0596	Alpha beta hydrolase
NIN90_RS14385	COG1040	competence protein
NIN90_RS14395	COG0494	nUDIX hydrolase
NIN90_RS14400	COG1218	3'(2'),5'-bisphosphate nucleotidase
NIN90_RS14410	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
NIN90_RS14415	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
NIN90_RS14420	COG3156	type II secretion system protein K
NIN90_RS14425	COG4795	General secretion pathway protein
NIN90_RS14430	COG2165	general secretion pathway protein
NIN90_RS14435	COG2165	general secretion pathway protein
NIN90_RS14440	COG2165	general secretion pathway protein
NIN90_RS14445	COG1459	type II secretion system
NIN90_RS14450	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
NIN90_RS14460	COG3031	protein transport across the cell outer membrane
NIN90_RS14465	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
NIN90_RS14475	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
NIN90_RS14480	COG2982	Protein involved in outer membrane biogenesis
NIN90_RS14485	COG0456	acetyltransferase
NIN90_RS14490	COG1490	D-aminoacyl-tRNA deacylase activity
NIN90_RS14510	COG1217	gtp-binding protein TYPA
NIN90_RS14515	COG0174	glutamine synthetase
NIN90_RS14525	COG3852	Histidine kinase
NIN90_RS14530	COG2204	response regulator
NIN90_RS14535	COG5001	Diguanylate cyclase
NIN90_RS14535	COG3300	MHYT domain
NIN90_RS14540	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
NIN90_RS14610	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
NIN90_RS14620	COG4206	TonB-dependent receptor
NIN90_RS14625	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
NIN90_RS14640	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
NIN90_RS14645	COG0534	Mate efflux family protein
NIN90_RS14655	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
NIN90_RS14660	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
NIN90_RS14665	COG2937	Belongs to the GPAT DAPAT family
NIN90_RS14670	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
NIN90_RS14675	COG3161	chorismate lyase activity
NIN90_RS14680	COG1580	Controls the rotational direction of flagella during chemotaxis
NIN90_RS14685	COG0705	Rhomboid family
NIN90_RS14690	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NIN90_RS14695	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
NIN90_RS14700	COG2177	Part of the ABC transporter FtsEX involved in
NIN90_RS14705	COG2884	Cell division ATP-binding protein ftsE
NIN90_RS14710	COG0552	protein localization to endoplasmic reticulum
NIN90_RS14715	COG0742	ribosomal rna small subunit methyltransferase
NIN90_RS14725	COG2095	MarC family integral membrane protein
NIN90_RS14755	COG0783	Belongs to the Dps family
NIN90_RS14770	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
NIN90_RS14775	COG0640	Transcriptional regulator
NIN90_RS14780	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
NIN90_RS14785	COG1280	lysine exporter protein (LysE YggA)
NIN90_RS14790	COG2267	carboxylic ester hydrolase activity
NIN90_RS14795	COG0561	phosphatase activity
NIN90_RS14810	COG3148	PFAM DTW domain containing protein
NIN90_RS14815	COG2199	diguanylate cyclase activity
NIN90_RS14815	COG2200	EAL domain
NIN90_RS14815	COG3287	FIST C domain
NIN90_RS14820	COG1011	Hydrolase
NIN90_RS14825	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
NIN90_RS14835	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
NIN90_RS14840	COG0019	diaminopimelate decarboxylase activity
NIN90_RS14850	COG1965	Belongs to the frataxin family
NIN90_RS14855	COG3072	Adenylate cyclase
NIN90_RS14870	COG2959	enzyme of heme biosynthesis
NIN90_RS14875	COG3071	HemY protein
NIN90_RS14880	COG0635	Involved in the biosynthesis of porphyrin-containing compound
NIN90_RS14915	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NIN90_RS14915	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
NIN90_RS14930	COG0084	hydrolase, TatD family'
NIN90_RS14935	COG0805	protein transport
NIN90_RS14940	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NIN90_RS14945	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
NIN90_RS14955	COG3165	ubiquinone biosynthetic process from chorismate
NIN90_RS14960	COG2226	methyltransferase
NIN90_RS14965	COG1322	Protein conserved in bacteria
NIN90_RS14990	COG2160	L-arabinose isomerase activity
NIN90_RS15000	COG1069	ribulokinase activity
NIN90_RS15005	COG1879	ABC-type sugar transport system periplasmic component
NIN90_RS15010	COG1129	ABC transporter
NIN90_RS15015	COG1172	Belongs to the binding-protein-dependent transport system permease family
NIN90_RS15020	COG1879	ABC-type sugar transport system periplasmic component
NIN90_RS15025	COG1129	ABC transporter
NIN90_RS15030	COG1172	Belongs to the binding-protein-dependent transport system permease family
NIN90_RS15035	COG1172	Belongs to the binding-protein-dependent transport system permease family
NIN90_RS15040	COG2081	HI0933 family
NIN90_RS15050	COG1528	Iron-storage protein
NIN90_RS15055	COG0589	response to stress
NIN90_RS15075	COG5001	Diguanylate cyclase
NIN90_RS15075	COG5002	protein histidine kinase activity
NIN90_RS15080	COG1522	sequence-specific DNA binding
NIN90_RS15100	COG0006	proline dipeptidase activity
NIN90_RS15100	COG0006	proline dipeptidase activity
NIN90_RS15105	COG1309	transcriptional regulator
NIN90_RS15110	COG1012	belongs to the aldehyde dehydrogenase family
NIN90_RS15115	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
NIN90_RS15130	COG4175	Glycine betaine
NIN90_RS15135	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
NIN90_RS15140	COG2022	thiamine diphosphate biosynthetic process
NIN90_RS15150	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
NIN90_RS15160	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
NIN90_RS15165	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
NIN90_RS15170	COG2132	Multicopper oxidase
NIN90_RS15245	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
NIN90_RS15250	COG1739	Uncharacterized protein family UPF0029
NIN90_RS15260	COG0183	Belongs to the thiolase family
NIN90_RS15265	COG0583	DNA-binding transcription factor activity
NIN90_RS15270	COG2814	Major facilitator Superfamily
NIN90_RS15280	COG0765	amino acid transport
NIN90_RS15290	COG0355	proton-transporting ATP synthase activity, rotational mechanism
NIN90_RS15295	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
NIN90_RS15300	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
NIN90_RS15305	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
NIN90_RS15310	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
NIN90_RS15315	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
NIN90_RS15330	COG3312	ion transport
NIN90_RS15335	COG1475	DNA binding
NIN90_RS15340	COG1192	Involved in chromosome partitioning
NIN90_RS15345	COG0357	Ribosomal RNA small subunit methyltransferase G
NIN90_RS15350	COG0445	tRNA wobble uridine modification
NIN90_RS15355	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
NIN90_RS15365	COG0706	membrane insertase activity
NIN90_RS15380	COG0230	Belongs to the bacterial ribosomal protein bL34 family
NIN90_RS15385	COG1126	abc transporter atp-binding protein
NIN90_RS15405	COG0488	(ABC) transporter
NIN90_RS15415	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
NIN90_RS15435	COG2207	Transcriptional regulator
NIN90_RS15590	COG3772	lysozyme
NIN90_RS15635	COG1484	DNA-dependent DNA replication
NIN90_RS15645	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
NIN90_RS15755	COG1674	ftsk spoiiie
NIN90_RS15770	COG0582	viral genome integration into host DNA
NIN90_RS15790	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NIN90_RS15800	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
NIN90_RS15825	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
NIN90_RS15840	COG2423	ornithine cyclodeaminase activity
NIN90_RS15850	COG4145	pantothenate transmembrane transporter activity
NIN90_RS15855	COG0583	DNA-binding transcription factor activity
NIN90_RS15860	COG0435	Glutathione S-transferase
NIN90_RS15865	COG0400	carboxylic ester hydrolase activity
NIN90_RS15870	COG1280	lysine exporter protein (LysE YggA)
NIN90_RS15875	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
NIN90_RS15885	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
NIN90_RS15900	COG2721	sulfolactate sulfo-lyase activity
NIN90_RS15960	COG0625	glutathione transferase activity
NIN90_RS15965	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
NIN90_RS15975	COG0573	inorganic phosphate transmembrane transporter activity
NIN90_RS15980	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NIN90_RS16000	COG1464	Belongs to the NlpA lipoprotein family
NIN90_RS16005	COG1454	alcohol dehydrogenase
NIN90_RS16010	COG0512	Glutamine amidotransferase of anthranilate synthase
NIN90_RS16010	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
NIN90_RS16030	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
NIN90_RS16045	COG0653	protein targeting
NIN90_RS16055	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS16065	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS16075	COG1024	Enoyl-CoA hydratase
NIN90_RS16080	COG1024	Enoyl-CoA hydratase
NIN90_RS16085	COG1960	acyl-CoA dehydrogenase activity
NIN90_RS16095	COG0183	Belongs to the thiolase family
NIN90_RS16105	COG1960	acyl-CoA dehydrogenase activity
NIN90_RS16110	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
NIN90_RS16115	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
NIN90_RS16130	COG0450	alkyl hydroperoxide reductase
NIN90_RS16135	COG3634	alkyl hydroperoxide reductase activity
NIN90_RS16145	COG1609	Transcriptional regulator
NIN90_RS16145	COG2207	Transcriptional regulator
NIN90_RS16150	COG1454	alcohol dehydrogenase
NIN90_RS16155	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
NIN90_RS16160	COG0406	alpha-ribazole phosphatase activity
NIN90_RS16175	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
NIN90_RS16200	COG0697	spore germination
NIN90_RS16205	COG0583	DNA-binding transcription factor activity
NIN90_RS16220	COG0840	transmembrane signaling receptor activity
NIN90_RS16250	COG2425	protein containing a von Willebrand factor type A (vWA) domain
NIN90_RS16265	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
NIN90_RS16275	COG1309	transcriptional regulator
NIN90_RS16280	COG0513	Belongs to the DEAD box helicase family
NIN90_RS16285	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
NIN90_RS16290	COG0814	amino acid
NIN90_RS16295	COG0840	transmembrane signaling receptor activity
NIN90_RS16305	COG3447	MASE1 domain protein
NIN90_RS16305	COG5001	Diguanylate cyclase
NIN90_RS16305	COG5002	protein histidine kinase activity
NIN90_RS16310	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
NIN90_RS16320	COG1984	allophanate hydrolase subunit 2
NIN90_RS16330	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
NIN90_RS16335	COG4181	ATPase activity
NIN90_RS16345	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
NIN90_RS16350	COG1716	ATPase activity
NIN90_RS16350	COG5001	Diguanylate cyclase
NIN90_RS16360	COG0484	heat shock protein binding
NIN90_RS16400	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NIN90_RS16405	COG3300	MHYT domain
NIN90_RS16405	COG5001	Diguanylate cyclase
NIN90_RS16420	COG0404	The glycine cleavage system catalyzes the degradation of glycine
NIN90_RS16430	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
NIN90_RS16435	COG0509	glycine decarboxylation via glycine cleavage system
NIN90_RS16440	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
NIN90_RS16440	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
NIN90_RS16445	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NIN90_RS16455	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
NIN90_RS16460	COG3122	Protein conserved in bacteria
NIN90_RS16505	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
NIN90_RS16515	COG2985	domain, Protein
NIN90_RS16535	COG1811	Na channel or pump
NIN90_RS16540	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
NIN90_RS16560	COG0840	transmembrane signaling receptor activity
NIN90_RS16575	COG0513	Belongs to the DEAD box helicase family
NIN90_RS16625	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
NIN90_RS16635	COG0355	proton-transporting ATP synthase activity, rotational mechanism
NIN90_RS16640	COG0798	PFAM Bile acid sodium symporter
NIN90_RS16645	COG0583	DNA-binding transcription factor activity
NIN90_RS16665	COG0579	oxidoreductase
NIN90_RS16670	COG3121	Chaperone
NIN90_RS16700	COG0110	maltose O-acetyltransferase activity
NIN90_RS16710	COG1765	OsmC-like protein
NIN90_RS16720	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
NIN90_RS16725	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
NIN90_RS17050	COG1196	nuclear chromosome segregation
NIN90_RS17080	COG0784	Response regulator, receiver
NIN90_RS17080	COG5002	protein histidine kinase activity
NIN90_RS17080	COG2205	protein histidine kinase activity
NIN90_RS17105	COG4943	cyclic-guanylate-specific phosphodiesterase activity
NIN90_RS17110	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NIN90_RS17115	COG1151	hydroxylamine reductase activity
NIN90_RS17135	COG1522	sequence-specific DNA binding
NIN90_RS17140	COG0531	amino acid
NIN90_RS17150	COG0748	coenzyme F420 binding
NIN90_RS17155	COG3721	Heme iron utilization protein
NIN90_RS17165	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
NIN90_RS17170	COG0811	peptide transport
NIN90_RS17175	COG0848	biopolymer transport protein
NIN90_RS17185	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NIN90_RS17190	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
NIN90_RS17220	COG0633	Ferredoxin
NIN90_RS17220	COG3217	Mosc domain protein beta barrel domain protein
NIN90_RS17225	COG0418	dihydroorotase activity
NIN90_RS17230	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
NIN90_RS17235	COG2354	Protein conserved in bacteria
NIN90_RS17255	COG1349	DNA-binding transcription factor activity
NIN90_RS17280	COG3833	ABC-type maltose transport systems, permease component
NIN90_RS17285	COG1175	transmembrane transport
NIN90_RS17295	COG3842	ATPase activity
NIN90_RS17335	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NIN90_RS17345	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NIN90_RS17365	COG0517	IMP dehydrogenase activity
NIN90_RS17375	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS17385	COG1917	Cupin 2, conserved barrel domain protein
NIN90_RS17415	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
NIN90_RS17420	COG1070	Carbohydrate kinase
NIN90_RS17425	COG4806	L-rhamnose isomerase
NIN90_RS17430	COG3254	rhamnose metabolic process
NIN90_RS17435	COG0235	Class ii aldolase
NIN90_RS17445	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NIN90_RS17450	COG0800	Aldolase
NIN90_RS17460	COG0840	transmembrane signaling receptor activity
NIN90_RS17475	COG1175	transmembrane transport
NIN90_RS17480	COG0395	ABC-type sugar transport system, permease component
NIN90_RS17485	COG3842	ATPase activity
NIN90_RS17490	COG1653	transport
NIN90_RS17500	COG0534	Mate efflux family protein
NIN90_RS17505	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
NIN90_RS17510	COG0823	Involved in the tonB-independent uptake of proteins
NIN90_RS17515	COG0393	Putative heavy-metal-binding
NIN90_RS17520	COG2197	response regulator
NIN90_RS17525	COG1522	sequence-specific DNA binding
NIN90_RS17530	COG2962	Rard protein
NIN90_RS17545	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
NIN90_RS17565	COG0251	oxidation-reduction process
NIN90_RS17575	COG0367	asparagine synthase
NIN90_RS17580	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NIN90_RS17580	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
NIN90_RS17585	COG1215	transferase activity, transferring glycosyl groups
NIN90_RS17610	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
NIN90_RS17615	COG0835	chemotaxis
NIN90_RS17615	COG0784	Response regulator, receiver
NIN90_RS17620	COG2315	Protein conserved in bacteria
NIN90_RS17625	COG1846	Transcriptional regulator
NIN90_RS17635	COG3706	GGDEF domain
NIN90_RS17695	COG1741	Belongs to the pirin family
NIN90_RS17700	COG0745	RESPONSE REGULATOR receiver
NIN90_RS17705	COG2205	protein histidine kinase activity
NIN90_RS17815	COG2814	Major facilitator Superfamily
NIN90_RS17825	COG3123	guanosine phosphorylase activity
NIN90_RS17835	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
NIN90_RS17840	COG0569	domain protein
NIN90_RS17845	COG0668	transmembrane transport
NIN90_RS17850	COG2211	Major facilitator Superfamily
NIN90_RS17860	COG1067	ATP-dependent peptidase activity
NIN90_RS17870	COG4172	Belongs to the ABC transporter superfamily
NIN90_RS17875	COG0583	DNA-binding transcription factor activity
NIN90_RS17880	COG1620	l-lactate permease
NIN90_RS17895	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
NIN90_RS17910	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
NIN90_RS17930	COG3152	Membrane
NIN90_RS17955	COG0519	Catalyzes the synthesis of GMP from XMP
NIN90_RS17970	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS17975	COG0583	DNA-binding transcription factor activity
NIN90_RS17985	COG1120	ATPase activity
NIN90_RS17990	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NIN90_RS17995	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NIN90_RS18000	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
NIN90_RS18005	COG4774	siderophore transport
NIN90_RS18020	COG3384	dioxygenase
NIN90_RS18025	COG0583	DNA-binding transcription factor activity
NIN90_RS18035	COG1342	Belongs to the UPF0251 family
NIN90_RS18040	COG0583	DNA-binding transcription factor activity
NIN90_RS18050	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NIN90_RS18080	COG1917	Cupin 2, conserved barrel domain protein
NIN90_RS18080	COG2169	Transcriptional regulator
NIN90_RS18085	COG1301	dicarboxylic acid transport
NIN90_RS18090	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
NIN90_RS18100	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
NIN90_RS18110	COG2259	Doxx family
NIN90_RS18115	COG0402	S-adenosylhomocysteine deaminase activity
NIN90_RS18140	COG0363	glucosamine-6-phosphate deaminase activity
NIN90_RS18155	COG0739	heme binding
NIN90_RS18160	COG2213	PTS system mannitol-specific
NIN90_RS18160	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
NIN90_RS18165	COG0246	Mannitol dehydrogenase
NIN90_RS18170	COG3722	fumarate hydratase activity
NIN90_RS18180	COG3284	Transcriptional regulator
NIN90_RS18190	COG1461	Dihydroxyacetone kinase
NIN90_RS18195	COG2376	Dihydroxyacetone kinase
NIN90_RS18220	COG2221	Nitrite and sulphite reductase 4Fe-4S
NIN90_RS18220	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
NIN90_RS18230	COG3302	dmso reductase anchor subunit
NIN90_RS18235	COG0437	4 iron, 4 sulfur cluster binding
NIN90_RS18240	COG0243	molybdopterin cofactor binding
NIN90_RS18245	COG0095	Lipoate-protein ligase
NIN90_RS18250	COG0443	Heat shock 70 kDa protein
NIN90_RS18265	COG2176	DNA-directed DNA polymerase activity
NIN90_RS18335	COG1486	melibiose metabolic process
NIN90_RS18340	COG0583	DNA-binding transcription factor activity
NIN90_RS18345	COG4221	oxidoreductase activity
NIN90_RS18350	COG0583	DNA-binding transcription factor activity
NIN90_RS18365	COG3706	GGDEF domain
NIN90_RS18370	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NIN90_RS18380	COG3304	Inner membrane component domain
NIN90_RS18385	COG2329	Antibiotic biosynthesis monooxygenase
NIN90_RS18400	COG2207	Transcriptional regulator
NIN90_RS18400	COG1609	Transcriptional regulator
NIN90_RS18405	COG1335	isochorismatase
NIN90_RS18420	COG2910	NAD(P)H-binding
NIN90_RS18440	COG1349	DNA-binding transcription factor activity
NIN90_RS18445	COG2084	Dehydrogenase
NIN90_RS18450	COG3395	kinase activity
NIN90_RS18455	COG0235	Class ii aldolase
NIN90_RS18460	COG3622	Belongs to the hyi family
NIN90_RS18465	COG2610	gluconate transmembrane transporter activity
NIN90_RS18470	COG1522	sequence-specific DNA binding
NIN90_RS18475	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
NIN90_RS18480	COG0724	RNA recognition motif
NIN90_RS18500	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
NIN90_RS18520	COG2226	methyltransferase
NIN90_RS18525	COG0583	DNA-binding transcription factor activity
NIN90_RS18535	COG0513	Belongs to the DEAD box helicase family
NIN90_RS18590	COG1262	PFAM Formylglycine-generating sulfatase enzyme
NIN90_RS18610	COG0745	RESPONSE REGULATOR receiver
NIN90_RS18625	COG2201	protein-glutamate methylesterase activity
NIN90_RS18630	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
NIN90_RS18635	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
NIN90_RS18640	COG0840	transmembrane signaling receptor activity
NIN90_RS18645	COG0835	chemotaxis
NIN90_RS18650	COG0835	chemotaxis
NIN90_RS18655	COG2198	Histidine kinase
NIN90_RS18655	COG0643	Histidine kinase
NIN90_RS18670	COG1444	tRNA N-acetyltransferase activity
NIN90_RS18675	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
NIN90_RS18705	COG0217	transcriptional regulatory protein
NIN90_RS18720	COG2084	Dehydrogenase
NIN90_RS18735	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
NIN90_RS18740	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
NIN90_RS18745	COG1845	cytochrome c oxidase, subunit III
NIN90_RS18750	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
NIN90_RS18755	COG0109	protoheme IX farnesyltransferase activity
NIN90_RS18765	COG2909	trisaccharide binding
NIN90_RS18770	COG0058	SHG alpha-glucan phosphorylase activity
NIN90_RS18775	COG1640	4-alpha-glucanotransferase
NIN90_RS18780	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
NIN90_RS18790	COG3501	Rhs element vgr protein
NIN90_RS18835	COG3788	relative of glutathione S-transferase, MAPEG superfamily
NIN90_RS18860	COG0471	metal ion transport
NIN90_RS18865	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NIN90_RS18870	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
NIN90_RS18875	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
NIN90_RS18880	COG3033	Beta-eliminating lyase
NIN90_RS18890	COG2188	Transcriptional regulator
NIN90_RS18895	COG1131	(ABC) transporter
NIN90_RS18920	COG3383	formate dehydrogenase (NAD+) activity
NIN90_RS18940	COG1132	(ABC) transporter
NIN90_RS18950	COG4580	involved in the transport of maltose and maltodextrins
NIN90_RS18965	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
NIN90_RS18970	COG1162	GTPase activity
NIN90_RS18995	COG0786	glutamate:sodium symporter activity
NIN90_RS19030	COG1566	PFAM secretion protein HlyD family protein
NIN90_RS19040	COG3706	GGDEF domain
NIN90_RS19055	COG0813	purine-nucleoside phosphorylase activity
NIN90_RS19060	COG3272	Protein of unknown function (DUF1722)
NIN90_RS19065	COG0789	Transcriptional regulator
NIN90_RS19070	COG0415	Belongs to the DNA photolyase family
NIN90_RS19075	COG1376	ErfK ybiS ycfS ynhG family protein
NIN90_RS19075	COG1388	LysM domain
NIN90_RS19085	COG0513	Belongs to the DEAD box helicase family
NIN90_RS19095	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NIN90_RS19100	COG0573	inorganic phosphate transmembrane transporter activity
NIN90_RS19105	COG0581	inorganic phosphate transmembrane transporter activity
NIN90_RS19110	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
NIN90_RS19115	COG2199	diguanylate cyclase activity
NIN90_RS19125	COG3314	Sporulation integral membrane protein YlbJ
NIN90_RS19130	COG0659	secondary active sulfate transmembrane transporter activity
NIN90_RS19145	COG0739	heme binding
NIN90_RS19150	COG5001	Diguanylate cyclase
NIN90_RS19155	COG0583	DNA-binding transcription factor activity
NIN90_RS19160	COG2814	Major facilitator Superfamily
NIN90_RS19170	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
NIN90_RS19180	COG1764	response to oxidative stress
NIN90_RS19185	COG1846	Transcriptional regulator
NIN90_RS19190	COG0179	Fumarylacetoacetate (FAA) hydrolase
NIN90_RS19210	COG1280	lysine exporter protein (LysE YggA)
NIN90_RS19220	COG1902	pentaerythritol trinitrate reductase activity
NIN90_RS19225	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
NIN90_RS19230	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
NIN90_RS19230	COG1565	acr, cog1565
NIN90_RS19235	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
NIN90_RS19270	COG0109	protoheme IX farnesyltransferase activity
NIN90_RS19285	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
NIN90_RS19295	COG3447	MASE1 domain protein
NIN90_RS19295	COG5002	protein histidine kinase activity
NIN90_RS19295	COG5001	Diguanylate cyclase
NIN90_RS19315	COG1917	Cupin 2, conserved barrel domain protein
NIN90_RS19315	COG2207	Transcriptional regulator
NIN90_RS19330	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NIN90_RS19335	COG0697	spore germination
NIN90_RS19340	COG3477	response to acidic pH
NIN90_RS19345	COG3240	lipase activity
NIN90_RS19365	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
NIN90_RS19375	COG1349	DNA-binding transcription factor activity
NIN90_RS19380	COG0673	inositol 2-dehydrogenase activity
NIN90_RS19385	COG4702	Belongs to the UPF0303 family
NIN90_RS19395	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
NIN90_RS19410	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
NIN90_RS19430	COG2814	Major facilitator Superfamily
NIN90_RS19435	COG0583	DNA-binding transcription factor activity
NIN90_RS19440	COG1902	pentaerythritol trinitrate reductase activity
NIN90_RS19445	COG0656	L-ascorbic acid biosynthetic process
NIN90_RS19450	COG4943	cyclic-guanylate-specific phosphodiesterase activity
NIN90_RS19460	COG3842	ATPase activity
NIN90_RS19490	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NIN90_RS19505	COG2130	NADP-dependent
NIN90_RS19510	COG1309	transcriptional regulator
NIN90_RS19515	COG0564	pseudouridine synthase activity
NIN90_RS19530	COG1846	Transcriptional regulator
NIN90_RS19605	COG3829	transcription factor binding
NIN90_RS19630	COG3501	Rhs element vgr protein
NIN90_RS19695	COG3409	Peptidoglycan-binding domain 1 protein
NIN90_RS19695	COG3501	Rhs element vgr protein
NIN90_RS19710	COG1869	D-ribose catabolic process
NIN90_RS19715	COG1129	ABC transporter
NIN90_RS19720	COG1172	Belongs to the binding-protein-dependent transport system permease family
NIN90_RS19725	COG1879	ABC-type sugar transport system periplasmic component
NIN90_RS19730	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
NIN90_RS19735	COG1609	Transcriptional regulator
NIN90_RS19740	COG0583	DNA-binding transcription factor activity
NIN90_RS19745	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
NIN90_RS19750	COG0584	glycerophosphoryl diester phosphodiesterase
NIN90_RS19755	COG2271	Major facilitator Superfamily
NIN90_RS19760	COG5001	Diguanylate cyclase
NIN90_RS19760	COG3300	MHYT domain
NIN90_RS19765	COG0840	transmembrane signaling receptor activity
NIN90_RS19790	COG2204	response regulator
NIN90_RS19805	COG0579	oxidoreductase
NIN90_RS19815	COG3530	Putative quorum-sensing-regulated virulence factor
NIN90_RS19825	COG0589	response to stress
NIN90_RS19830	COG3171	Protein conserved in bacteria
NIN90_RS19840	COG0583	DNA-binding transcription factor activity
NIN90_RS19865	COG4948	Mandelate Racemase Muconate Lactonizing
NIN90_RS19890	COG1012	belongs to the aldehyde dehydrogenase family
NIN90_RS19895	COG3724	N-succinylarginine dihydrolase activity
NIN90_RS19910	COG5002	protein histidine kinase activity
NIN90_RS19910	COG2205	protein histidine kinase activity
NIN90_RS19910	COG0784	Response regulator, receiver
NIN90_RS19920	COG5001	Diguanylate cyclase
NIN90_RS19935	COG2304	oxidoreductase activity
NIN90_RS19955	COG0714	Associated with various cellular activities
NIN90_RS19960	COG0840	transmembrane signaling receptor activity
NIN90_RS19975	COG0366	Alpha amylase catalytic
NIN90_RS19985	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
NIN90_RS19990	COG2195	Cleaves the N-terminal amino acid of tripeptides
NIN90_RS20000	COG3604	Transcriptional regulator
NIN90_RS20005	COG1017	nitric oxide dioxygenase activity
NIN90_RS20005	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
NIN90_RS20010	COG3706	GGDEF domain
NIN90_RS20015	COG4681	YaeQ
NIN90_RS20020	COG1278	Cold shock
NIN90_RS20025	COG3036	rescue of stalled ribosome
NIN90_RS20055	COG5001	Diguanylate cyclase
NIN90_RS20055	COG3300	MHYT domain
NIN90_RS20060	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NIN90_RS20060	COG2205	protein histidine kinase activity
NIN90_RS20065	COG2197	response regulator
NIN90_RS20075	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
NIN90_RS20075	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
NIN90_RS20080	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NIN90_RS20115	COG1022	Amp-dependent synthetase and ligase
NIN90_RS20150	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
NIN90_RS20155	COG3186	Phenylalanine-4-hydroxylase
NIN90_RS20160	COG2154	pterin-4-alpha-carbinolamine dehydratase
NIN90_RS20165	COG0534	Mate efflux family protein
NIN90_RS20175	COG0861	Integral membrane protein TerC family
NIN90_RS20180	COG4977	sequence-specific DNA binding
NIN90_RS20180	COG1917	Cupin 2, conserved barrel domain protein
NIN90_RS20185	COG0456	acetyltransferase
NIN90_RS20190	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
NIN90_RS20195	COG0662	Cupin 2, conserved barrel domain protein
NIN90_RS20200	COG0527	aspartate kinase activity
NIN90_RS20225	COG3437	response regulator, receiver
NIN90_RS20225	COG0784	Response regulator, receiver
NIN90_RS20235	COG0113	porphobilinogen synthase activity
NIN90_RS20245	COG0459	protein refolding
NIN90_RS20250	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
NIN90_RS20255	COG2239	Acts as a magnesium transporter
NIN90_RS20265	COG0840	transmembrane signaling receptor activity
NIN90_RS20275	COG2113	Glycine betaine
NIN90_RS20280	COG4176	ABC-type proline glycine betaine transport system permease component
NIN90_RS20285	COG4175	Glycine betaine
NIN90_RS20295	COG1166	arginine decarboxylase activity
NIN90_RS20300	COG0010	Belongs to the arginase family
NIN90_RS20305	COG1522	sequence-specific DNA binding
NIN90_RS20320	COG0765	amino acid transport
NIN90_RS20330	COG1686	Belongs to the peptidase S11 family
NIN90_RS20345	COG1566	PFAM secretion protein HlyD family protein
NIN90_RS20365	COG3121	Chaperone
NIN90_RS20370	COG3188	usher protein
NIN90_RS20430	COG4533	DNA binding
NIN90_RS20435	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NIN90_RS20440	COG3835	regulator
NIN90_RS20445	COG2610	gluconate transmembrane transporter activity
NIN90_RS20450	COG1929	Belongs to the glycerate kinase type-1 family
NIN90_RS20465	COG0531	amino acid
NIN90_RS20505	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
NIN90_RS20510	COG0363	glucosamine-6-phosphate deaminase activity
NIN90_RS20515	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
NIN90_RS20520	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
NIN90_RS20530	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
NIN90_RS20550	COG0346	lactoylglutathione lyase activity
NIN90_RS20560	COG3284	Transcriptional regulator
NIN90_RS20565	COG1012	belongs to the aldehyde dehydrogenase family
NIN90_RS20570	COG0156	8-amino-7-oxononanoate synthase activity
NIN90_RS20575	COG1063	alcohol dehydrogenase
NIN90_RS20580	COG1278	Cold shock
NIN90_RS20600	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
NIN90_RS20605	COG4943	cyclic-guanylate-specific phosphodiesterase activity
NIN90_RS20615	COG1132	(ABC) transporter
NIN90_RS20620	COG1132	(ABC) transporter
NIN90_RS20635	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
NIN90_RS20640	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
NIN90_RS20645	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
NIN90_RS20650	COG1116	anion transmembrane transporter activity
NIN90_RS20655	COG0351	phosphomethylpyrimidine kinase
NIN90_RS20665	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
NIN90_RS20675	COG3047	cAMP biosynthetic process
NIN90_RS20680	COG3227	Zinc metalloprotease (Elastase)
NIN90_RS20685	COG0366	Alpha amylase catalytic
NIN90_RS20700	COG4989	oxidoreductase activity
NIN90_RS20705	COG3275	phosphorelay sensor kinase activity
NIN90_RS20710	COG3279	Response regulator of the LytR AlgR family
NIN90_RS20715	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
NIN90_RS20720	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
NIN90_RS20735	COG0840	transmembrane signaling receptor activity
NIN90_RS20745	COG2814	Major facilitator Superfamily
NIN90_RS20765	COG1522	sequence-specific DNA binding
NIN90_RS20770	COG0840	transmembrane signaling receptor activity
NIN90_RS20775	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
NIN90_RS20780	COG5380	lipid catabolic process
NIN90_RS20795	COG0121	glutamine amidotransferase
NIN90_RS20805	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
NIN90_RS20810	COG4605	iron ion homeostasis
NIN90_RS20815	COG4604	ABC transporter, ATP-binding protein
NIN90_RS20820	COG2207	Transcriptional regulator
NIN90_RS20820	COG1609	Transcriptional regulator
NIN90_RS20835	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
NIN90_RS20840	COG2207	Transcriptional regulator
NIN90_RS20840	COG1917	Cupin 2, conserved barrel domain protein
NIN90_RS20860	COG0330	HflC and HflK could
NIN90_RS20870	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
NIN90_RS20885	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
NIN90_RS20890	COG0583	DNA-binding transcription factor activity
NIN90_RS20895	COG3781	membrane
NIN90_RS20900	COG0243	molybdopterin cofactor binding
NIN90_RS20905	COG1271	oxidase subunit
NIN90_RS20910	COG1294	oxidase, subunit
NIN90_RS20915	COG2390	Transcriptional regulator
NIN90_RS20925	COG1070	Carbohydrate kinase
NIN90_RS20935	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NIN90_RS20950	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NIN90_RS20960	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
NIN90_RS20970	COG1120	ATPase activity
NIN90_RS20975	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
NIN90_RS21005	COG1126	abc transporter atp-binding protein
NIN90_RS21010	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
NIN90_RS21015	COG4215	(ABC) transporter
NIN90_RS21020	COG4160	amino acid transport
NIN90_RS21025	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
NIN90_RS21030	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
NIN90_RS21045	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
NIN90_RS21045	COG1648	precorrin-2 dehydrogenase activity
NIN90_RS21075	COG3118	belongs to the thioredoxin family
NIN90_RS21080	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
NIN90_RS21135	COG0438	transferase activity, transferring glycosyl groups
NIN90_RS21155	COG0247	lactate metabolic process
NIN90_RS21160	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
NIN90_RS21165	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
NIN90_RS21170	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
NIN90_RS21215	COG4386	tail sheath protein
NIN90_RS21255	COG4695	Portal protein
NIN90_RS21260	COG2184	nucleotidyltransferase activity
NIN90_RS21420	COG4974	Belongs to the 'phage' integrase family
NIN90_RS21435	COG3132	Protein of unknown function, DUF480
NIN90_RS21440	COG2827	Endonuclease containing a URI domain
NIN90_RS21445	COG1879	ABC-type sugar transport system periplasmic component
NIN90_RS21450	COG5002	protein histidine kinase activity
NIN90_RS21450	COG0784	Response regulator, receiver
NIN90_RS21470	COG1492	cobalamin metabolic process
NIN90_RS21475	COG0725	ABC transporter, periplasmic molybdate-binding protein
NIN90_RS21480	COG4149	molybdate abc transporter
NIN90_RS21485	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
NIN90_RS21505	COG1289	transmembrane transporter activity
NIN90_RS21545	COG0210	DNA helicase
NIN90_RS21550	COG1335	isochorismatase
NIN90_RS21555	COG1803	Methylglyoxal synthase
NIN90_RS21560	COG1879	ABC-type sugar transport system periplasmic component
NIN90_RS21565	COG0784	Response regulator, receiver
NIN90_RS21565	COG2198	Histidine kinase
NIN90_RS21565	COG2205	protein histidine kinase activity
NIN90_RS21575	COG1979	alcohol dehydrogenase
NIN90_RS21580	COG2207	Transcriptional regulator
NIN90_RS21590	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
NIN90_RS21615	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NIN90_RS21620	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
NIN90_RS21630	COG0183	Belongs to the thiolase family
NIN90_RS21650	COG4166	transmembrane transport
NIN90_RS21660	COG3005	denitrification pathway
NIN90_RS21670	COG0243	molybdopterin cofactor binding
NIN90_RS21685	COG3850	Histidine kinase
NIN90_RS21690	COG2197	response regulator
NIN90_RS21695	COG3069	C4-dicarboxylate transmembrane transporter activity
NIN90_RS21710	COG2814	Major facilitator Superfamily
NIN90_RS21715	COG0840	transmembrane signaling receptor activity
NIN90_RS21720	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NIN90_RS21740	COG0840	transmembrane signaling receptor activity
NIN90_RS21745	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
NIN90_RS21755	COG0745	RESPONSE REGULATOR receiver
NIN90_RS21760	COG1280	lysine exporter protein (LysE YggA)
NIN90_RS21765	COG0583	DNA-binding transcription factor activity
NIN90_RS21810	COG1902	pentaerythritol trinitrate reductase activity
NIN90_RS21815	COG1073	alpha beta
NIN90_RS21820	COG1073	alpha beta
NIN90_RS21830	COG2207	Transcriptional regulator
NIN90_RS21840	COG0454	-acetyltransferase
NIN90_RS21845	COG0583	DNA-binding transcription factor activity
NIN90_RS21850	COG1073	alpha beta
NIN90_RS21935	COG1328	CTP reductase activity
NIN90_RS21940	COG0602	queuosine metabolic process
NIN90_RS21950	COG4067	protein conserved in archaea
NIN90_RS21950	COG0189	ligase activity
NIN90_RS21955	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NIN90_RS21955	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
NIN90_RS21955	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
NIN90_RS21960	COG1105	Belongs to the carbohydrate kinase PfkB family
NIN90_RS21965	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
NIN90_RS21965	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
NIN90_RS21970	COG1609	Transcriptional regulator
NIN90_RS21975	COG0420	3'-5' exonuclease activity
NIN90_RS21980	COG0419	ATPase involved in DNA repair
NIN90_RS21985	COG0784	Response regulator, receiver
NIN90_RS21985	COG2205	protein histidine kinase activity
NIN90_RS21990	COG0156	8-amino-7-oxononanoate synthase activity
NIN90_RS22005	COG0523	cobalamin synthesis protein
NIN90_RS22010	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
NIN90_RS22015	COG1846	Transcriptional regulator
NIN90_RS22020	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS22025	COG1064	alcohol dehydrogenase
NIN90_RS22030	COG2207	Transcriptional regulator
NIN90_RS22040	COG3437	response regulator, receiver
NIN90_RS22045	COG0784	Response regulator, receiver
NIN90_RS22045	COG2205	protein histidine kinase activity
NIN90_RS22045	COG5002	protein histidine kinase activity
NIN90_RS22050	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
NIN90_RS22055	COG0243	molybdopterin cofactor binding
NIN90_RS22065	COG5001	Diguanylate cyclase
NIN90_RS22090	COG3038	cytochrome b561
NIN90_RS22095	COG2353	YceI-like domain
NIN90_RS22100	COG2116	formate transmembrane transporter activity
NIN90_RS22105	COG0583	DNA-binding transcription factor activity
NIN90_RS22115	COG3593	DNA synthesis involved in DNA repair
NIN90_RS22120	COG0737	Belongs to the 5'-nucleotidase family
NIN90_RS22135	COG2824	Alkylphosphonate utilization operon protein PhnA
NIN90_RS22145	COG2050	protein possibly involved in aromatic compounds catabolism
NIN90_RS22155	COG4533	DNA binding
NIN90_RS22165	COG4771	TonB-dependent receptor
NIN90_RS22170	COG0583	DNA-binding transcription factor activity
NIN90_RS22175	COG0045	succinate-CoA ligase (ADP-forming) activity
NIN90_RS22175	COG1042	CoA-binding domain protein
NIN90_RS22175	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
NIN90_RS22185	COG1181	Belongs to the D-alanine--D-alanine ligase family
NIN90_RS22200	COG0023	Translation Initiation Factor
NIN90_RS22205	COG3140	Belongs to the UPF0181 family
NIN90_RS22230	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
NIN90_RS22235	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
NIN90_RS22250	COG2199	diguanylate cyclase activity
NIN90_RS22270	COG1309	transcriptional regulator
NIN90_RS22275	COG3845	ABC transporter
NIN90_RS22280	COG4603	Belongs to the binding-protein-dependent transport system permease family
NIN90_RS22285	COG1079	Belongs to the binding-protein-dependent transport system permease family
NIN90_RS22315	COG2351	hydroxyisourate hydrolase activity
NIN90_RS22320	COG0402	S-adenosylhomocysteine deaminase activity
NIN90_RS22345	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
NIN90_RS22375	COG0765	amino acid transport
NIN90_RS22380	COG0765	amino acid transport
NIN90_RS22405	COG2233	PERMEase
NIN90_RS22415	COG2207	Transcriptional regulator
NIN90_RS22415	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
NIN90_RS22420	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
NIN90_RS22450	COG3710	Transcriptional regulator
NIN90_RS22505	COG2501	S4 domain
NIN90_RS22520	COG2199	diguanylate cyclase activity
NIN90_RS22530	COG3706	GGDEF domain
NIN90_RS22530	COG2203	Gaf domain
NIN90_RS22530	COG5001	Diguanylate cyclase
NIN90_RS22530	COG4251	negative regulation of phosphorylation
NIN90_RS22550	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
NIN90_RS22555	COG4172	Belongs to the ABC transporter superfamily
NIN90_RS22560	COG4239	(ABC) transporter, permease
NIN90_RS22565	COG4174	ABC transporter (Permease)
NIN90_RS22570	COG4166	transmembrane transport
NIN90_RS22595	COG2866	Carboxypeptidase
NIN90_RS22615	COG3842	ATPase activity
NIN90_RS22625	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
NIN90_RS22630	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
NIN90_RS22635	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
NIN90_RS22645	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
NIN90_RS22650	COG1011	Hydrolase
NIN90_RS22665	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
NIN90_RS22670	COG2759	Belongs to the formate--tetrahydrofolate ligase family
NIN90_RS22675	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NIN90_RS22675	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
NIN90_RS22680	COG0302	gtp cyclohydrolase
NIN90_RS22690	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
NIN90_RS22695	COG2897	thiosulfate sulfurtransferase activity
NIN90_RS22710	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
NIN90_RS22720	COG0583	DNA-binding transcription factor activity
NIN90_RS22730	COG1309	transcriptional regulator
NIN90_RS22735	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
NIN90_RS22765	COG1335	isochorismatase
NIN90_RS22775	COG0456	acetyltransferase
NIN90_RS22785	COG1280	lysine exporter protein (LysE YggA)
NIN90_RS22790	COG0494	nUDIX hydrolase
NIN90_RS22800	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
NIN90_RS22835	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS22845	COG0454	-acetyltransferase
NIN90_RS22900	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
NIN90_RS22905	COG0789	Transcriptional regulator
NIN90_RS22945	COG4628	conserved protein (DUF2132)
NIN90_RS22950	COG4633	Protein conserved in bacteria
NIN90_RS22955	COG0672	)-iron permease
NIN90_RS22975	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
NIN90_RS22980	COG0513	Belongs to the DEAD box helicase family
NIN90_RS22995	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
NIN90_RS23005	COG0583	DNA-binding transcription factor activity
NIN90_RS23010	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
NIN90_RS23020	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
NIN90_RS23030	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
NIN90_RS23040	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
NIN90_RS23045	COG1012	belongs to the aldehyde dehydrogenase family
NIN90_RS23055	COG0318	PFAM AMP-dependent synthetase and ligase
NIN90_RS23060	COG2995	paraquat-inducible protein a
NIN90_RS23065	COG3008	intermembrane lipid transfer
NIN90_RS23065	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
NIN90_RS23080	COG0110	maltose O-acetyltransferase activity
NIN90_RS23085	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
NIN90_RS23095	COG4232	protein-disulfide reductase activity
NIN90_RS23100	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
NIN90_RS23105	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
NIN90_RS23115	COG1252	NADH dehydrogenase
NIN90_RS23150	COG1028	Short-chain dehydrogenase reductase Sdr
NIN90_RS23440	COG5433	transposase activity
NIN90_RS23470	COG5433	transposase activity
NIN90_RS23605	COG1660	Displays ATPase and GTPase activities
NIN90_RS23645	COG0616	signal peptide processing
NIN90_RS23750	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
NIN90_RS23815	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
NIN90_RS23875	COG3041	Addiction module toxin RelE StbE family
NIN90_RS23880	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
NIN90_RS23935	COG1192	Involved in chromosome partitioning
NIN90_RS24020	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
NIN90_RS24070	COG3328	transposase activity
NIN90_RS24120	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
NIN90_RS24145	COG5001	Diguanylate cyclase
NIN90_RS24180	COG0714	Associated with various cellular activities
NIN90_RS24190	COG0629	single-stranded DNA binding
NIN90_RS24235	COG0633	Ferredoxin
NIN90_RS24465	COG1132	(ABC) transporter
NIN90_RS24520	COG3173	Aminoglycoside phosphotransferase
NIN90_RS24535	COG4644	lycopene metabolic process
NIN90_RS24625	COG4974	Belongs to the 'phage' integrase family