locus-tag class description VFU_RS00010 PF00679 Elongation factor G C-terminus VFU_RS00010 PF14492 Elongation Factor G, domain II VFU_RS00010 PF03764 Elongation factor G, domain IV VFU_RS00010 PF00009 Elongation factor Tu GTP binding domain VFU_RS00010 PF03144 Elongation factor Tu domain 2 VFU_RS00015 PF00177 Ribosomal protein S7p/S5e VFU_RS00020 PF04077 DsrH like protein VFU_RS00025 PF02635 DsrE/DsrF-like family VFU_RS00030 PF02635 DsrE/DsrF-like family VFU_RS00035 PF13309 HTH domain VFU_RS00035 PF08348 YheO-like PAS domain VFU_RS00040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VFU_RS00040 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VFU_RS00050 PF04102 SlyX VFU_RS00055 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VFU_RS00060 PF01145 SPFH domain / Band 7 family VFU_RS00065 PF01145 SPFH domain / Band 7 family VFU_RS00065 PF12221 Bacterial membrane protein N terminal VFU_RS00070 PF13167 GTP-binding GTPase N-terminal VFU_RS00070 PF16360 GTP-binding GTPase Middle Region VFU_RS00070 PF01926 50S ribosome-binding GTPase VFU_RS00075 PF17209 Hfq protein VFU_RS00085 PF01119 DNA mismatch repair protein, C-terminal domain VFU_RS00085 PF08676 MutL C terminal dimerisation domain VFU_RS00090 PF01520 N-acetylmuramoyl-L-alanine amidase VFU_RS00095 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VFU_RS00100 PF08331 Domain of unknown function (DUF1730) VFU_RS00150 PF00929 Exonuclease VFU_RS00155 PF03193 RsgA GTPase VFU_RS00160 PF02666 Phosphatidylserine decarboxylase VFU_RS00165 PF03600 Citrate transporter VFU_RS00165 PF02080 TrkA-C domain VFU_RS00170 PF02743 Cache domain VFU_RS00170 PF00672 HAMP domain VFU_RS00170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS00180 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VFU_RS00180 PF01676 Metalloenzyme superfamily VFU_RS00185 PF01551 Peptidase family M23 VFU_RS00195 PF00440 Bacterial regulatory proteins, tetR family VFU_RS00195 PF08360 QacR-like protein, C-terminal region VFU_RS00200 PF01208 Uroporphyrinogen decarboxylase (URO-D) VFU_RS00205 PF09297 NADH pyrophosphatase zinc ribbon domain VFU_RS00205 PF00293 NUDIX domain VFU_RS00210 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VFU_RS00215 PF05000 RNA polymerase Rpb1, domain 4 VFU_RS00215 PF04983 RNA polymerase Rpb1, domain 3 VFU_RS00215 PF00623 RNA polymerase Rpb1, domain 2 VFU_RS00215 PF04997 RNA polymerase Rpb1, domain 1 VFU_RS00215 PF04998 RNA polymerase Rpb1, domain 5 VFU_RS00220 PF10385 RNA polymerase beta subunit external 1 domain VFU_RS00220 PF04565 RNA polymerase Rpb2, domain 3 VFU_RS00220 PF04561 RNA polymerase Rpb2, domain 2 VFU_RS00220 PF04563 RNA polymerase beta subunit VFU_RS00220 PF04560 RNA polymerase Rpb2, domain 7 VFU_RS00220 PF00562 RNA polymerase Rpb2, domain 6 VFU_RS00225 PF00542 Ribosomal protein L7/L12 C-terminal domain VFU_RS00225 PF16320 Ribosomal protein L7/L12 dimerisation domain VFU_RS00230 PF00466 Ribosomal protein L10 VFU_RS00235 PF00687 Ribosomal protein L1p/L10e family VFU_RS00240 PF03946 Ribosomal protein L11, N-terminal domain VFU_RS00240 PF00298 Ribosomal protein L11, RNA binding domain VFU_RS00245 PF02357 Transcription termination factor nusG VFU_RS00245 PF00467 KOW motif VFU_RS00250 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VFU_RS00255 PF03143 Elongation factor Tu C-terminal domain VFU_RS00255 PF03144 Elongation factor Tu domain 2 VFU_RS00255 PF00009 Elongation factor Tu GTP binding domain VFU_RS00280 PF00485 Phosphoribulokinase / Uridine kinase family VFU_RS00285 PF08279 HTH domain VFU_RS00285 PF03099 Biotin/lipoate A/B protein ligase family VFU_RS00285 PF02237 Biotin protein ligase C terminal domain VFU_RS00290 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VFU_RS00290 PF01565 FAD binding domain VFU_RS00300 PF13091 PLD-like domain VFU_RS00335 PF00175 Oxidoreductase NAD-binding domain VFU_RS00340 PF00111 2Fe-2S iron-sulfur cluster binding domain VFU_RS00340 PF00175 Oxidoreductase NAD-binding domain VFU_RS00340 PF00970 Oxidoreductase FAD-binding domain VFU_RS00345 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VFU_RS00355 PF07497 Rho termination factor, RNA-binding domain VFU_RS00355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VFU_RS00355 PF07498 Rho termination factor, N-terminal domain VFU_RS00360 PF00085 Thioredoxin VFU_RS00365 PF00270 DEAD/DEAH box helicase VFU_RS00365 PF00271 Helicase conserved C-terminal domain VFU_RS00370 PF02541 Ppx/GppA phosphatase family VFU_RS00375 PF00497 Bacterial extracellular solute-binding proteins, family 3 VFU_RS00375 PF00072 Response regulator receiver domain VFU_RS00375 PF01627 Hpt domain VFU_RS00375 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS00375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS00380 PF12832 MFS_1 like family VFU_RS00395 PF13193 AMP-binding enzyme C-terminal domain VFU_RS00395 PF00501 AMP-binding enzyme VFU_RS00395 PF16177 Acetyl-coenzyme A synthetase N-terminus VFU_RS00400 PF01220 Dehydroquinase class II VFU_RS00405 PF00364 Biotin-requiring enzyme VFU_RS00410 PF02785 Biotin carboxylase C-terminal domain VFU_RS00410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VFU_RS00410 PF00289 Biotin carboxylase, N-terminal domain VFU_RS00420 PF01207 Dihydrouridine synthase (Dus) VFU_RS00425 PF02954 Bacterial regulatory protein, Fis family VFU_RS00430 PF17200 Single Cache domain 2 VFU_RS00430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS00430 PF00672 HAMP domain VFU_RS00435 PF02378 Phosphotransferase system, EIIC VFU_RS00435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VFU_RS00445 PF12833 Helix-turn-helix domain VFU_RS00450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VFU_RS00450 PF02378 Phosphotransferase system, EIIC VFU_RS00450 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VFU_RS00455 PF01238 Phosphomannose isomerase type I VFU_RS00460 PF00480 ROK family VFU_RS00465 PF13411 MerR HTH family regulatory protein VFU_RS00470 PF01808 AICARFT/IMPCHase bienzyme VFU_RS00470 PF02142 MGS-like domain VFU_RS00475 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VFU_RS00475 PF02843 Phosphoribosylglycinamide synthetase, C domain VFU_RS00475 PF02844 Phosphoribosylglycinamide synthetase, N domain VFU_RS00485 PF00216 Bacterial DNA-binding protein VFU_RS00490 PF01595 Cyclin M transmembrane N-terminal domain VFU_RS00490 PF00571 CBS domain VFU_RS00495 PF00924 Mechanosensitive ion channel VFU_RS00500 PF04222 Protein of unknown function (DUF416) VFU_RS00505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VFU_RS00510 PF03167 Uracil DNA glycosylase superfamily VFU_RS00530 PF01464 Transglycosylase SLT domain VFU_RS00530 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VFU_RS00540 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VFU_RS00540 PF00753 Metallo-beta-lactamase superfamily VFU_RS00540 PF10996 Beta-Casp domain VFU_RS00545 PF02397 Bacterial sugar transferase VFU_RS00550 PF05159 Capsule polysaccharide biosynthesis protein VFU_RS00555 PF00534 Glycosyl transferases group 1 VFU_RS00560 PF13439 Glycosyltransferase Family 4 VFU_RS00560 PF00534 Glycosyl transferases group 1 VFU_RS00565 PF00132 Bacterial transferase hexapeptide (six repeats) VFU_RS00580 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VFU_RS00585 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VFU_RS00590 PF00501 AMP-binding enzyme VFU_RS00590 PF13193 AMP-binding enzyme C-terminal domain VFU_RS00615 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VFU_RS00615 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VFU_RS00625 PF00483 Nucleotidyl transferase VFU_RS00630 PF16363 GDP-mannose 4,6 dehydratase VFU_RS00640 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VFU_RS00640 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VFU_RS00640 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VFU_RS00645 PF00953 Glycosyl transferase family 4 VFU_RS00665 PF13439 Glycosyltransferase Family 4 VFU_RS00665 PF00534 Glycosyl transferases group 1 VFU_RS00690 PF01370 NAD dependent epimerase/dehydratase family VFU_RS00695 PF02706 Chain length determinant protein VFU_RS00695 PF13807 G-rich domain on putative tyrosine kinase VFU_RS00695 PF13614 AAA domain VFU_RS00700 PF01451 Low molecular weight phosphotyrosine protein phosphatase VFU_RS00705 PF10531 SLBB domain VFU_RS00705 PF02563 Polysaccharide biosynthesis/export protein VFU_RS00705 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VFU_RS00715 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VFU_RS00725 PF06082 Exopolysaccharide biosynthesis protein YbjH VFU_RS00730 PF01370 NAD dependent epimerase/dehydratase family VFU_RS00735 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VFU_RS00735 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VFU_RS00735 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VFU_RS00740 PF03279 Bacterial lipid A biosynthesis acyltransferase VFU_RS00755 PF13439 Glycosyltransferase Family 4 VFU_RS00755 PF00534 Glycosyl transferases group 1 VFU_RS00770 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VFU_RS00775 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VFU_RS00785 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VFU_RS00790 PF00535 Glycosyl transferase family 2 VFU_RS00795 PF00534 Glycosyl transferases group 1 VFU_RS00795 PF13439 Glycosyltransferase Family 4 VFU_RS00800 PF13439 Glycosyltransferase Family 4 VFU_RS00800 PF00534 Glycosyl transferases group 1 VFU_RS00805 PF01467 Cytidylyltransferase-like VFU_RS00815 PF01370 NAD dependent epimerase/dehydratase family VFU_RS00820 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VFU_RS00820 PF06827 Zinc finger found in FPG and IleRS VFU_RS00820 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VFU_RS00830 PF00471 Ribosomal protein L33 VFU_RS00835 PF04002 RadC-like JAB domain VFU_RS00840 PF00672 HAMP domain VFU_RS00840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS00840 PF17200 Single Cache domain 2 VFU_RS00845 PF02441 Flavoprotein VFU_RS00845 PF04127 DNA / pantothenate metabolism flavoprotein VFU_RS00850 PF00440 Bacterial regulatory proteins, tetR family VFU_RS00855 PF03279 Bacterial lipid A biosynthesis acyltransferase VFU_RS00865 PF03725 3' exoribonuclease family, domain 2 VFU_RS00865 PF01138 3' exoribonuclease family, domain 1 VFU_RS00870 PF08340 Domain of unknown function (DUF1732) VFU_RS00870 PF03755 YicC-like family, N-terminal region VFU_RS00900 PF04002 RadC-like JAB domain VFU_RS00950 PF00873 AcrB/AcrD/AcrF family VFU_RS00965 PF13737 Transposase DDE domain VFU_RS00970 PF00665 Integrase core domain VFU_RS00970 PF13276 HTH-like domain VFU_RS00970 PF13333 Integrase core domain VFU_RS00975 PF01527 Transposase VFU_RS00980 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS00980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS00980 PF00672 HAMP domain VFU_RS00985 PF00072 Response regulator receiver domain VFU_RS00985 PF00486 Transcriptional regulatory protein, C terminal VFU_RS00995 PF13358 DDE superfamily endonuclease VFU_RS01005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS01005 PF00672 HAMP domain VFU_RS01020 PF00403 Heavy-metal-associated domain VFU_RS01025 PF13411 MerR HTH family regulatory protein VFU_RS01050 PF00403 Heavy-metal-associated domain VFU_RS01080 PF00075 RNase H VFU_RS01110 PF03350 Uncharacterized protein family, UPF0114 VFU_RS01115 PF01032 FecCD transport family VFU_RS01120 PF01497 Periplasmic binding protein VFU_RS01125 PF00005 ABC transporter VFU_RS01130 PF00593 TonB dependent receptor VFU_RS01130 PF07715 TonB-dependent Receptor Plug Domain VFU_RS01135 PF00664 ABC transporter transmembrane region VFU_RS01135 PF00005 ABC transporter VFU_RS01150 PF00270 DEAD/DEAH box helicase VFU_RS01150 PF00271 Helicase conserved C-terminal domain VFU_RS01150 PF00570 HRDC domain VFU_RS01150 PF16124 RecQ zinc-binding VFU_RS01150 PF09382 RQC domain VFU_RS01155 PF00892 EamA-like transporter family VFU_RS01165 PF01810 LysE type translocator VFU_RS01175 PF00580 UvrD/REP helicase N-terminal domain VFU_RS01175 PF13361 UvrD-like helicase C-terminal domain VFU_RS01185 PF05114 Protein of unknown function (DUF692) VFU_RS01205 PF01432 Peptidase family M3 VFU_RS01210 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VFU_RS01215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VFU_RS01215 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS01220 PF12802 MarR family VFU_RS01230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VFU_RS01230 PF00529 HlyD membrane-fusion protein of T1SS VFU_RS01235 PF00873 AcrB/AcrD/AcrF family VFU_RS01270 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS01270 PF12911 N-terminal TM domain of oligopeptide transport permease C VFU_RS01275 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS01280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VFU_RS01285 PF00005 ABC transporter VFU_RS01285 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VFU_RS01320 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VFU_RS01325 PF00580 UvrD/REP helicase N-terminal domain VFU_RS01325 PF13361 UvrD-like helicase C-terminal domain VFU_RS01330 PF00440 Bacterial regulatory proteins, tetR family VFU_RS01335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VFU_RS01340 PF00873 AcrB/AcrD/AcrF family VFU_RS01345 PF04380 Membrane fusogenic activity VFU_RS01355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS01355 PF03466 LysR substrate binding domain VFU_RS01395 PF00132 Bacterial transferase hexapeptide (six repeats) VFU_RS01400 PF07369 Protein of unknown function (DUF1488) VFU_RS01405 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VFU_RS01405 PF01488 Shikimate / quinate 5-dehydrogenase VFU_RS01405 PF08501 Shikimate dehydrogenase substrate binding domain VFU_RS01410 PF01218 Coproporphyrinogen III oxidase VFU_RS01415 PF01300 Telomere recombination VFU_RS01420 PF00731 AIR carboxylase VFU_RS01425 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VFU_RS01425 PF02222 ATP-grasp domain VFU_RS01430 PF01396 Topoisomerase DNA binding C4 zinc finger VFU_RS01435 PF04361 Protein of unknown function (DUF494) VFU_RS01440 PF17782 DprA winged helix domain VFU_RS01440 PF02481 DNA recombination-mediator protein A VFU_RS01450 PF01327 Polypeptide deformylase VFU_RS01455 PF02911 Formyl transferase, C-terminal domain VFU_RS01455 PF00551 Formyl transferase VFU_RS01460 PF01029 NusB family VFU_RS01460 PF01189 16S rRNA methyltransferase RsmB/F VFU_RS01465 PF02080 TrkA-C domain VFU_RS01465 PF02254 TrkA-N domain VFU_RS01470 PF02386 Cation transport protein VFU_RS01480 PF03006 Haemolysin-III related VFU_RS01485 PF07070 SpoOM protein VFU_RS01490 PF06288 Protein of unknown function (DUF1040) VFU_RS01495 PF12801 4Fe-4S binding domain VFU_RS01495 PF13746 4Fe-4S dicluster domain VFU_RS01495 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VFU_RS01500 PF01636 Phosphotransferase enzyme family VFU_RS01505 PF01323 DSBA-like thioredoxin domain VFU_RS01510 PF01553 Acyltransferase VFU_RS01515 PF13335 Magnesium chelatase, subunit ChlI C-terminal VFU_RS01515 PF01078 Magnesium chelatase, subunit ChlI VFU_RS01520 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VFU_RS01520 PF00205 Thiamine pyrophosphate enzyme, central domain VFU_RS01520 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VFU_RS01530 PF01063 Amino-transferase class IV VFU_RS01535 PF00920 Dehydratase family VFU_RS01540 PF00585 C-terminal regulatory domain of Threonine dehydratase VFU_RS01540 PF00291 Pyridoxal-phosphate dependent enzyme VFU_RS01545 PF08240 Alcohol dehydrogenase GroES-like domain VFU_RS01545 PF00107 Zinc-binding dehydrogenase VFU_RS01550 PF03466 LysR substrate binding domain VFU_RS01550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS01555 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS01560 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS01570 PF01206 Sulfurtransferase TusA VFU_RS01580 PF01169 Uncharacterized protein family UPF0016 VFU_RS01585 PF02091 Glycyl-tRNA synthetase alpha subunit VFU_RS01590 PF02092 Glycyl-tRNA synthetase beta subunit VFU_RS01590 PF05746 DALR anticodon binding domain VFU_RS01595 PF00155 Aminotransferase class I and II VFU_RS01600 PF00011 Hsp20/alpha crystallin family VFU_RS01610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS01610 PF18053 DNA gyrase B subunit insert domain VFU_RS01610 PF00986 DNA gyrase B subunit, carboxyl terminus VFU_RS01610 PF00204 DNA gyrase B VFU_RS01610 PF01751 Toprim domain VFU_RS01615 PF02463 RecF/RecN/SMC N terminal domain VFU_RS01620 PF00712 DNA polymerase III beta subunit, N-terminal domain VFU_RS01620 PF02768 DNA polymerase III beta subunit, C-terminal domain VFU_RS01620 PF02767 DNA polymerase III beta subunit, central domain VFU_RS01625 PF00308 Bacterial dnaA protein VFU_RS01625 PF11638 DnaA N-terminal domain VFU_RS01625 PF08299 Bacterial dnaA protein helix-turn-helix VFU_RS01630 PF00497 Bacterial extracellular solute-binding proteins, family 3 VFU_RS01635 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS01640 PF00005 ABC transporter VFU_RS01645 PF00825 Ribonuclease P VFU_RS01650 PF14849 YidC periplasmic domain VFU_RS01650 PF02096 60Kd inner membrane protein VFU_RS01655 PF12631 MnmE helical domain VFU_RS01655 PF10396 GTP-binding protein TrmE N-terminus VFU_RS01655 PF01926 50S ribosome-binding GTPase VFU_RS01660 PF00893 Small Multidrug Resistance protein VFU_RS01665 PF00893 Small Multidrug Resistance protein VFU_RS01675 PF06130 Phosphate propanoyltransferase VFU_RS01685 PF13187 4Fe-4S dicluster domain VFU_RS01685 PF04055 Radical SAM superfamily VFU_RS01690 PF01228 Glycine radical VFU_RS01690 PF02901 Pyruvate formate lyase-like VFU_RS01695 PF00465 Iron-containing alcohol dehydrogenase VFU_RS01705 PF00171 Aldehyde dehydrogenase family VFU_RS01705 PF00465 Iron-containing alcohol dehydrogenase VFU_RS01710 PF00936 BMC domain VFU_RS01715 PF00936 BMC domain VFU_RS01720 PF00936 BMC domain VFU_RS01740 PF00258 Flavodoxin VFU_RS01745 PF13932 GidA associated domain VFU_RS01745 PF01134 Glucose inhibited division protein A VFU_RS01750 PF02527 rRNA small subunit methyltransferase G VFU_RS01755 PF13614 AAA domain VFU_RS01760 PF02195 ParB-like nuclease domain VFU_RS01760 PF17762 HTH domain found in ParB protein VFU_RS01765 PF03899 ATP synthase I chain VFU_RS01770 PF00119 ATP synthase A chain VFU_RS01775 PF00137 ATP synthase subunit C VFU_RS01780 PF00430 ATP synthase B/B' CF(0) VFU_RS01785 PF00213 ATP synthase delta (OSCP) subunit VFU_RS01790 PF00306 ATP synthase alpha/beta chain, C terminal domain VFU_RS01790 PF02874 ATP synthase alpha/beta family, beta-barrel domain VFU_RS01790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VFU_RS01795 PF00231 ATP synthase VFU_RS01800 PF02874 ATP synthase alpha/beta family, beta-barrel domain VFU_RS01800 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VFU_RS01805 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VFU_RS01805 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VFU_RS01810 PF12804 MobA-like NTP transferase domain VFU_RS01810 PF00132 Bacterial transferase hexapeptide (six repeats) VFU_RS01810 PF14602 Hexapeptide repeat of succinyl-transferase VFU_RS01815 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS01820 PF00497 Bacterial extracellular solute-binding proteins, family 3 VFU_RS01825 PF07690 Major Facilitator Superfamily VFU_RS01830 PF03466 LysR substrate binding domain VFU_RS01830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS01835 PF02803 Thiolase, C-terminal domain VFU_RS01835 PF00108 Thiolase, N-terminal domain VFU_RS01840 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VFU_RS01840 PF00378 Enoyl-CoA hydratase/isomerase VFU_RS01840 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VFU_RS01845 PF09186 Domain of unknown function (DUF1949) VFU_RS01845 PF01205 Uncharacterized protein family UPF0029 VFU_RS01850 PF02386 Cation transport protein VFU_RS01855 PF12724 Flavodoxin domain VFU_RS01905 PF07732 Multicopper oxidase VFU_RS01905 PF00394 Multicopper oxidase VFU_RS01905 PF07731 Multicopper oxidase VFU_RS01910 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VFU_RS01915 PF13667 ThiC-associated domain VFU_RS01915 PF01964 Radical SAM ThiC family VFU_RS01920 PF02581 Thiamine monophosphate synthase VFU_RS01925 PF00899 ThiF family VFU_RS01935 PF05690 Thiazole biosynthesis protein ThiG VFU_RS01940 PF06968 Biotin and Thiamin Synthesis associated domain VFU_RS01940 PF04055 Radical SAM superfamily VFU_RS01945 PF00005 ABC transporter VFU_RS01945 PF00571 CBS domain VFU_RS01950 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS01955 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VFU_RS01960 PF05199 GMC oxidoreductase VFU_RS01960 PF00732 GMC oxidoreductase VFU_RS01970 PF00440 Bacterial regulatory proteins, tetR family VFU_RS01970 PF13977 BetI-type transcriptional repressor, C-terminal VFU_RS01975 PF01321 Creatinase/Prolidase N-terminal domain VFU_RS01975 PF00557 Metallopeptidase family M24 VFU_RS01975 PF01321 Creatinase/Prolidase N-terminal domain VFU_RS01975 PF00557 Metallopeptidase family M24 VFU_RS01980 PF03466 LysR substrate binding domain VFU_RS01980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS01985 PF07690 Major Facilitator Superfamily VFU_RS01995 PF01037 Lrp/AsnC ligand binding domain VFU_RS02000 PF00563 EAL domain VFU_RS02000 PF08448 PAS fold VFU_RS02000 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS02005 PF04445 Putative SAM-dependent methyltransferase VFU_RS02015 PF00892 EamA-like transporter family VFU_RS02020 PF00582 Universal stress protein family VFU_RS02025 PF00210 Ferritin-like domain VFU_RS02030 PF10625 Universal stress protein B (UspB) VFU_RS02040 PF02653 Branched-chain amino acid transport system / permease component VFU_RS02045 PF02653 Branched-chain amino acid transport system / permease component VFU_RS02050 PF00005 ABC transporter VFU_RS02055 PF13407 Periplasmic binding protein domain VFU_RS02065 PF00005 ABC transporter VFU_RS02070 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VFU_RS02075 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VFU_RS02075 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VFU_RS02080 PF00596 Class II Aldolase and Adducin N-terminal domain VFU_RS02085 PF02610 L-arabinose isomerase VFU_RS02085 PF11762 L-arabinose isomerase C-terminal domain VFU_RS02095 PF12833 Helix-turn-helix domain VFU_RS02095 PF02311 AraC-like ligand binding domain VFU_RS02110 PF02646 RmuC family VFU_RS02120 PF02036 SCP-2 sterol transfer family VFU_RS02125 PF03109 ABC1 family VFU_RS02130 PF02416 mttA/Hcf106 family VFU_RS02135 PF02416 mttA/Hcf106 family VFU_RS02140 PF00902 Sec-independent protein translocase protein (TatC) VFU_RS02145 PF01026 TatD related DNase VFU_RS02150 PF00490 Delta-aminolevulinic acid dehydratase VFU_RS02160 PF00476 DNA polymerase family A VFU_RS02160 PF01612 3'-5' exonuclease VFU_RS02160 PF01367 5'-3' exonuclease, C-terminal SAM fold VFU_RS02160 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VFU_RS02165 PF01926 50S ribosome-binding GTPase VFU_RS02170 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VFU_RS02180 PF04220 Der GTPase activator (YihI) VFU_RS02185 PF10675 Protein of unknown function (DUF2489) VFU_RS02190 PF04055 Radical SAM superfamily VFU_RS02190 PF06969 HemN C-terminal domain VFU_RS02195 PF07719 Tetratricopeptide repeat VFU_RS02195 PF07219 HemY protein N-terminus VFU_RS02200 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VFU_RS02205 PF02602 Uroporphyrinogen-III synthase HemD VFU_RS02210 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VFU_RS02210 PF03900 Porphobilinogen deaminase, C-terminal domain VFU_RS02215 PF12633 Adenylate cyclase NT domain VFU_RS02215 PF01295 Adenylate cyclase, class-I VFU_RS02220 PF01491 Frataxin-like domain VFU_RS02230 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VFU_RS02230 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VFU_RS02235 PF01678 Diaminopimelate epimerase VFU_RS02240 PF04340 Protein of unknown function, DUF484 VFU_RS02245 PF02899 Phage integrase, N-terminal SAM-like domain VFU_RS02245 PF00589 Phage integrase family VFU_RS02250 PF13419 Haloacid dehalogenase-like hydrolase VFU_RS02255 PF08495 FIST N domain VFU_RS02255 PF00563 EAL domain VFU_RS02255 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS02255 PF10442 FIST C domain VFU_RS02260 PF03942 DTW domain VFU_RS02275 PF12146 Serine aminopeptidase, S33 VFU_RS02280 PF01810 LysE type translocator VFU_RS02285 PF00563 EAL domain VFU_RS02285 PF08668 HDOD domain VFU_RS02290 PF01022 Bacterial regulatory protein, arsR family VFU_RS02295 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VFU_RS02295 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VFU_RS02310 PF00210 Ferritin-like domain VFU_RS02340 PF01914 MarC family integral membrane protein VFU_RS02355 PF02881 SRP54-type protein, helical bundle domain VFU_RS02355 PF00448 SRP54-type protein, GTPase domain VFU_RS02360 PF00005 ABC transporter VFU_RS02365 PF18075 FtsX extracellular domain VFU_RS02370 PF04545 Sigma-70, region 4 VFU_RS02370 PF00140 Sigma-70 factor, region 1.2 VFU_RS02370 PF04542 Sigma-70 region 2 VFU_RS02375 PF00581 Rhodanese-like domain VFU_RS02380 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VFU_RS02380 PF01694 Rhomboid family VFU_RS02385 PF03748 Flagellar basal body-associated protein FliL VFU_RS02390 PF04345 Chorismate lyase VFU_RS02395 PF01040 UbiA prenyltransferase family VFU_RS02400 PF01553 Acyltransferase VFU_RS02405 PF01219 Prokaryotic diacylglycerol kinase VFU_RS02410 PF00717 Peptidase S24-like VFU_RS02410 PF01726 LexA DNA binding domain VFU_RS02420 PF01554 MatE VFU_RS02425 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS02425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VFU_RS02430 PF00440 Bacterial regulatory proteins, tetR family VFU_RS02440 PF05958 tRNA (Uracil-5-)-methyltransferase VFU_RS02445 PF07715 TonB-dependent Receptor Plug Domain VFU_RS02445 PF00593 TonB dependent receptor VFU_RS02455 PF01177 Asp/Glu/Hydantoin racemase VFU_RS02490 PF00962 Adenosine/AMP deaminase VFU_RS02495 PF13188 PAS domain VFU_RS02495 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS02495 PF03707 Bacterial signalling protein N terminal repeat VFU_RS02495 PF00563 EAL domain VFU_RS02500 PF00158 Sigma-54 interaction domain VFU_RS02500 PF00072 Response regulator receiver domain VFU_RS02500 PF02954 Bacterial regulatory protein, Fis family VFU_RS02505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS02505 PF00989 PAS fold VFU_RS02505 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS02515 PF00120 Glutamine synthetase, catalytic domain VFU_RS02515 PF03951 Glutamine synthetase, beta-Grasp domain VFU_RS02520 PF03144 Elongation factor Tu domain 2 VFU_RS02520 PF00679 Elongation factor G C-terminus VFU_RS02520 PF00009 Elongation factor Tu GTP binding domain VFU_RS02535 PF03631 Virulence factor BrkB VFU_RS02540 PF02580 D-Tyr-tRNA(Tyr) deacylase VFU_RS02545 PF09500 Putative thioesterase (yiiD_Cterm) VFU_RS02545 PF00583 Acetyltransferase (GNAT) family VFU_RS02550 PF05170 AsmA family VFU_RS02555 PF01293 Phosphoenolpyruvate carboxykinase VFU_RS02560 PF01430 Hsp33 protein VFU_RS02565 PF01479 S4 domain VFU_RS02570 PF11356 Type II secretion system protein C VFU_RS02575 PF03958 Bacterial type II/III secretion system short domain VFU_RS02575 PF00263 Bacterial type II and III secretion system protein VFU_RS02585 PF00482 Type II secretion system (T2SS), protein F VFU_RS02590 PF08334 Type II secretion system (T2SS), protein G VFU_RS02590 PF07963 Prokaryotic N-terminal methylation motif VFU_RS02595 PF12019 Type II transport protein GspH VFU_RS02600 PF02501 Type II secretion system (T2SS), protein I VFU_RS02600 PF07963 Prokaryotic N-terminal methylation motif VFU_RS02605 PF07963 Prokaryotic N-terminal methylation motif VFU_RS02605 PF11612 Type II secretion system (T2SS), protein J VFU_RS02610 PF03934 Type II secretion system (T2SS), protein K VFU_RS02615 PF05134 Type II secretion system (T2SS), protein L VFU_RS02615 PF12693 GspL periplasmic domain VFU_RS02620 PF04612 Type II secretion system (T2SS), protein M VFU_RS02625 PF01203 Type II secretion system (T2SS), protein N VFU_RS02630 PF00459 Inositol monophosphatase family VFU_RS02635 PF00293 NUDIX domain VFU_RS02640 PF01106 NifU-like domain VFU_RS02640 PF01521 Iron-sulphur cluster biosynthesis VFU_RS02645 PF00156 Phosphoribosyl transferase domain VFU_RS02650 PF00561 alpha/beta hydrolase fold VFU_RS02670 PF01272 Transcription elongation factor, GreA/GreB, C-term VFU_RS02670 PF03449 Transcription elongation factor, N-terminal VFU_RS02675 PF00356 Bacterial regulatory proteins, lacI family VFU_RS02675 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VFU_RS02680 PF00920 Dehydratase family VFU_RS02685 PF01202 Shikimate kinase VFU_RS02690 PF02447 GntP family permease VFU_RS02695 PF01081 KDPG and KHG aldolase VFU_RS02700 PF00072 Response regulator receiver domain VFU_RS02700 PF00486 Transcriptional regulatory protein, C terminal VFU_RS02705 PF00672 HAMP domain VFU_RS02705 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS02705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS02710 PF00860 Permease family VFU_RS02715 PF00271 Helicase conserved C-terminal domain VFU_RS02715 PF17191 RecG wedge domain VFU_RS02715 PF00270 DEAD/DEAH box helicase VFU_RS02720 PF00588 SpoU rRNA Methylase family VFU_RS02720 PF12105 SpoU, rRNA methylase, C-terminal VFU_RS02725 PF02824 TGS domain VFU_RS02725 PF04607 Region found in RelA / SpoT proteins VFU_RS02725 PF13291 ACT domain VFU_RS02730 PF01192 RNA polymerase Rpb6 VFU_RS02735 PF00625 Guanylate kinase VFU_RS02740 PF02592 Putative vitamin uptake transporter VFU_RS02745 PF00474 Sodium:solute symporter family VFU_RS02755 PF00999 Sodium/hydrogen exchanger family VFU_RS02755 PF02080 TrkA-C domain VFU_RS02755 PF03471 Transporter associated domain VFU_RS02760 PF00072 Response regulator receiver domain VFU_RS02760 PF00196 Bacterial regulatory proteins, luxR family VFU_RS02765 PF17967 Pullulanase N2 domain VFU_RS02765 PF18494 Pullulanase Ins domain VFU_RS02765 PF11852 Domain of unknown function (DUF3372) VFU_RS02765 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VFU_RS02765 PF03714 Bacterial pullanase-associated domain VFU_RS02770 PF11412 Disulphide bond corrector protein DsbC VFU_RS02770 PF02683 Cytochrome C biogenesis protein transmembrane region VFU_RS02775 PF02863 Arginine repressor, C-terminal domain VFU_RS02775 PF01316 Arginine repressor, DNA binding domain VFU_RS02780 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VFU_RS02780 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VFU_RS02785 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VFU_RS02785 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VFU_RS02790 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VFU_RS02790 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VFU_RS02795 PF00696 Amino acid kinase family VFU_RS02805 PF03606 C4-dicarboxylate anaerobic carrier VFU_RS02810 PF03605 Anaerobic c4-dicarboxylate membrane transporter VFU_RS02815 PF10415 Fumarase C C-terminus VFU_RS02815 PF00206 Lyase VFU_RS02820 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS02825 PF04186 FxsA cytoplasmic membrane protein VFU_RS02830 PF00588 SpoU rRNA Methylase family VFU_RS02835 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VFU_RS02835 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VFU_RS02840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS02840 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS02840 PF00672 HAMP domain VFU_RS02840 PF16527 Two-component sensor protein CpxA, periplasmic domain VFU_RS02845 PF00072 Response regulator receiver domain VFU_RS02845 PF00486 Transcriptional regulatory protein, C terminal VFU_RS02855 PF16916 Dimerisation domain of Zinc Transporter VFU_RS02855 PF01545 Cation efflux family VFU_RS02860 PF00365 Phosphofructokinase VFU_RS02865 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VFU_RS02870 PF06005 Cell division protein ZapB VFU_RS02875 PF02219 Methylenetetrahydrofolate reductase VFU_RS02880 PF00696 Amino acid kinase family VFU_RS02880 PF00742 Homoserine dehydrogenase VFU_RS02880 PF03447 Homoserine dehydrogenase, NAD binding domain VFU_RS02885 PF01053 Cys/Met metabolism PLP-dependent enzyme VFU_RS02890 PF01340 Met Apo-repressor, MetJ VFU_RS02895 PF03949 Malic enzyme, NAD binding domain VFU_RS02895 PF00390 Malic enzyme, N-terminal domain VFU_RS02900 PF01197 Ribosomal protein L31 VFU_RS02905 PF18074 Primosomal protein N C-terminal domain VFU_RS02905 PF00270 DEAD/DEAH box helicase VFU_RS02905 PF00271 Helicase conserved C-terminal domain VFU_RS02905 PF17764 3′ DNA-binding domain (3′BD) VFU_RS02905 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VFU_RS02910 PF00356 Bacterial regulatory proteins, lacI family VFU_RS02920 PF00227 Proteasome subunit VFU_RS02930 PF01040 UbiA prenyltransferase family VFU_RS02935 PF03737 Aldolase/RraA VFU_RS02940 PF01554 MatE VFU_RS02945 PF00121 Triosephosphate isomerase VFU_RS02970 PF00166 Chaperonin 10 Kd subunit VFU_RS02975 PF00118 TCP-1/cpn60 chaperonin family VFU_RS02980 PF00005 ABC transporter VFU_RS02990 PF02308 MgtC family VFU_RS02995 PF04055 Radical SAM superfamily VFU_RS03000 PF08207 Elongation factor P (EF-P) KOW-like domain VFU_RS03000 PF01132 Elongation factor P (EF-P) OB domain VFU_RS03000 PF09285 Elongation factor P, C-terminal VFU_RS03005 PF02313 Fumarate reductase subunit D VFU_RS03010 PF02300 Fumarate reductase subunit C VFU_RS03015 PF13085 2Fe-2S iron-sulfur cluster binding domain VFU_RS03015 PF13183 4Fe-4S dicluster domain VFU_RS03020 PF00890 FAD binding domain VFU_RS03020 PF02910 Fumarate reductase flavoprotein C-term VFU_RS03025 PF00152 tRNA synthetases class II (D, K and N) VFU_RS03030 PF00581 Rhodanese-like domain VFU_RS03035 PF02556 Preprotein translocase subunit SecB VFU_RS03040 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VFU_RS03040 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VFU_RS03045 PF00132 Bacterial transferase hexapeptide (six repeats) VFU_RS03045 PF06426 Serine acetyltransferase, N-terminal VFU_RS03055 PF00311 Phosphoenolpyruvate carboxylase VFU_RS03060 PF07687 Peptidase dimerisation domain VFU_RS03060 PF01546 Peptidase family M20/M25/M40 VFU_RS03065 PF02774 Semialdehyde dehydrogenase, dimerisation domain VFU_RS03065 PF01118 Semialdehyde dehydrogenase, NAD binding domain VFU_RS03070 PF00696 Amino acid kinase family VFU_RS03075 PF00764 Arginosuccinate synthase VFU_RS03090 PF08534 Redoxin VFU_RS03090 PF00462 Glutaredoxin VFU_RS03095 PF03466 LysR substrate binding domain VFU_RS03095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS03100 PF00912 Transglycosylase VFU_RS03100 PF17092 Penicillin-binding protein OB-like domain VFU_RS03100 PF00905 Penicillin binding protein transpeptidase domain VFU_RS03120 PF04351 Pilus assembly protein, PilP VFU_RS03125 PF00263 Bacterial type II and III secretion system protein VFU_RS03125 PF07660 Secretin and TonB N terminus short domain VFU_RS03125 PF11741 AMIN domain VFU_RS03125 PF03958 Bacterial type II/III secretion system short domain VFU_RS03130 PF01202 Shikimate kinase VFU_RS03135 PF01761 3-dehydroquinate synthase VFU_RS03145 PF02086 D12 class N6 adenine-specific DNA methyltransferase VFU_RS03150 PF00834 Ribulose-phosphate 3 epimerase family VFU_RS03155 PF13419 Haloacid dehalogenase-like hydrolase VFU_RS03160 PF00579 tRNA synthetases class I (W and Y) VFU_RS03175 PF00117 Glutamine amidotransferase class-I VFU_RS03180 PF00202 Aminotransferase class-III VFU_RS03185 PF04958 Arginine N-succinyltransferase beta subunit VFU_RS03190 PF00171 Aldehyde dehydrogenase family VFU_RS03200 PF13545 Crp-like helix-turn-helix domain VFU_RS03200 PF00027 Cyclic nucleotide-binding domain VFU_RS03205 PF00485 Phosphoribulokinase / Uridine kinase family VFU_RS03210 PF06794 Uncharacterised protein family (UPF0270) VFU_RS03215 PF00561 alpha/beta hydrolase fold VFU_RS03225 PF12848 ABC transporter VFU_RS03225 PF00005 ABC transporter VFU_RS03230 PF02525 Flavodoxin-like fold VFU_RS03240 PF09526 Probable metal-binding protein (DUF2387) VFU_RS03245 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VFU_RS03250 PF01112 Asparaginase VFU_RS03255 PF00709 Adenylosuccinate synthetase VFU_RS03260 PF08238 Sel1 repeat VFU_RS03265 PF11893 Domain of unknown function (DUF3413) VFU_RS03265 PF00884 Sulfatase VFU_RS03275 PF00588 SpoU rRNA Methylase family VFU_RS03275 PF08032 RNA 2'-O ribose methyltransferase substrate binding VFU_RS03280 PF00338 Ribosomal protein S10p/S20e VFU_RS03285 PF00297 Ribosomal protein L3 VFU_RS03290 PF00573 Ribosomal protein L4/L1 family VFU_RS03295 PF00276 Ribosomal protein L23 VFU_RS03300 PF03947 Ribosomal Proteins L2, C-terminal domain VFU_RS03300 PF00181 Ribosomal Proteins L2, RNA binding domain VFU_RS03305 PF00203 Ribosomal protein S19 VFU_RS03310 PF00237 Ribosomal protein L22p/L17e VFU_RS03315 PF07650 KH domain VFU_RS03315 PF00189 Ribosomal protein S3, C-terminal domain VFU_RS03325 PF00366 Ribosomal protein S17 VFU_RS03330 PF00238 Ribosomal protein L14p/L23e VFU_RS03335 PF00467 KOW motif VFU_RS03335 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VFU_RS03340 PF00673 ribosomal L5P family C-terminus VFU_RS03340 PF00281 Ribosomal protein L5 VFU_RS03345 PF00253 Ribosomal protein S14p/S29e VFU_RS03350 PF00410 Ribosomal protein S8 VFU_RS03355 PF00347 Ribosomal protein L6 VFU_RS03360 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VFU_RS03365 PF00333 Ribosomal protein S5, N-terminal domain VFU_RS03365 PF03719 Ribosomal protein S5, C-terminal domain VFU_RS03370 PF00327 Ribosomal protein L30p/L7e VFU_RS03375 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VFU_RS03380 PF00344 SecY translocase VFU_RS03385 PF00444 Ribosomal protein L36 VFU_RS03390 PF00416 Ribosomal protein S13/S18 VFU_RS03395 PF00411 Ribosomal protein S11 VFU_RS03400 PF00163 Ribosomal protein S4/S9 N-terminal domain VFU_RS03400 PF01479 S4 domain VFU_RS03405 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VFU_RS03405 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VFU_RS03405 PF01000 RNA polymerase Rpb3/RpoA insert domain VFU_RS03420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VFU_RS03420 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VFU_RS03425 PF08525 Opacity-associated protein A N-terminal motif VFU_RS03425 PF04225 Opacity-associated protein A LysM-like domain VFU_RS03435 PF13673 Acetyltransferase (GNAT) domain VFU_RS03440 PF00271 Helicase conserved C-terminal domain VFU_RS03440 PF00270 DEAD/DEAH box helicase VFU_RS03440 PF03880 DbpA RNA binding domain VFU_RS03450 PF00149 Calcineurin-like phosphoesterase VFU_RS03450 PF02872 5'-nucleotidase, C-terminal domain VFU_RS03455 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VFU_RS03455 PF14824 Sirohaem biosynthesis protein central VFU_RS03455 PF10414 Sirohaem synthase dimerisation region VFU_RS03465 PF00009 Elongation factor Tu GTP binding domain VFU_RS03470 PF02080 TrkA-C domain VFU_RS03470 PF03600 Citrate transporter VFU_RS03500 PF02687 FtsX-like permease family VFU_RS03500 PF00005 ABC transporter VFU_RS03500 PF12704 MacB-like periplasmic core domain VFU_RS03515 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VFU_RS03520 PF01625 Peptide methionine sulfoxide reductase VFU_RS03525 PF07244 Surface antigen variable number repeat VFU_RS03525 PF17243 POTRA domain TamA domain 1 VFU_RS03525 PF01103 Surface antigen VFU_RS03530 PF04357 TamB, inner membrane protein subunit of TAM complex VFU_RS03535 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VFU_RS03545 PF00719 Inorganic pyrophosphatase VFU_RS03550 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VFU_RS03555 PF02875 Mur ligase family, glutamate ligase domain VFU_RS03555 PF01225 Mur ligase family, catalytic domain VFU_RS03555 PF08245 Mur ligase middle domain VFU_RS03560 PF02441 Flavoprotein VFU_RS03570 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS03575 PF00005 ABC transporter VFU_RS03580 PF04751 Protein of unknown function (DUF615) VFU_RS03585 PF01523 Putative modulator of DNA gyrase VFU_RS03590 PF03448 MgtE intracellular N domain VFU_RS03590 PF01769 Divalent cation transporter VFU_RS03590 PF00571 CBS domain VFU_RS03595 PF00381 PTS HPr component phosphorylation site VFU_RS03600 PF03668 P-loop ATPase protein family VFU_RS03605 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VFU_RS03610 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VFU_RS03615 PF00309 Sigma-54 factor, Activator interacting domain (AID) VFU_RS03615 PF04963 Sigma-54 factor, core binding domain VFU_RS03615 PF04552 Sigma-54, DNA binding domain VFU_RS03620 PF12399 Branched-chain amino acid ATP-binding cassette transporter VFU_RS03620 PF00005 ABC transporter VFU_RS03625 PF03968 OstA-like protein VFU_RS03640 PF01380 SIS domain VFU_RS03640 PF00571 CBS domain VFU_RS03645 PF01699 Sodium/calcium exchanger protein VFU_RS03650 PF00005 ABC transporter VFU_RS03655 PF02405 Permease MlaE VFU_RS03660 PF02470 MlaD protein VFU_RS03665 PF05494 MlaC protein VFU_RS03670 PF13466 STAS domain VFU_RS03675 PF01722 BolA-like protein VFU_RS03680 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VFU_RS03685 PF01553 Acyltransferase VFU_RS03690 PF01042 Endoribonuclease L-PSP VFU_RS03695 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VFU_RS03695 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VFU_RS03700 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VFU_RS03700 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VFU_RS03705 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VFU_RS03705 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VFU_RS03710 PF13638 PIN domain VFU_RS03710 PF02562 PhoH-like protein VFU_RS03715 PF00271 Helicase conserved C-terminal domain VFU_RS03715 PF12137 RNA polymerase recycling family C-terminal VFU_RS03715 PF18339 RapA N-terminal Tudor like domain 1 VFU_RS03715 PF18337 RapA N-terminal Tudor like domain VFU_RS03715 PF00176 SNF2 family N-terminal domain VFU_RS03725 PF00849 RNA pseudouridylate synthase VFU_RS03730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VFU_RS03730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VFU_RS03745 PF02789 Cytosol aminopeptidase family, N-terminal domain VFU_RS03745 PF00883 Cytosol aminopeptidase family, catalytic domain VFU_RS03750 PF03739 Lipopolysaccharide export system permease LptF/LptG VFU_RS03755 PF03739 Lipopolysaccharide export system permease LptF/LptG VFU_RS03765 PF07694 5TMR of 5TMR-LYT VFU_RS03765 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS03830 PF00816 H-NS histone family VFU_RS03870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS03870 PF03466 LysR substrate binding domain VFU_RS03880 PF17200 Single Cache domain 2 VFU_RS03880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS03880 PF00672 HAMP domain VFU_RS03885 PF03707 Bacterial signalling protein N terminal repeat VFU_RS03885 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS03885 PF00563 EAL domain VFU_RS03900 PF03171 2OG-Fe(II) oxygenase superfamily VFU_RS03900 PF14226 non-haem dioxygenase in morphine synthesis N-terminal VFU_RS03910 PF00072 Response regulator receiver domain VFU_RS03955 PF00694 Aconitase C-terminal domain VFU_RS03960 PF00330 Aconitase family (aconitate hydratase) VFU_RS03965 PF00180 Isocitrate/isopropylmalate dehydrogenase VFU_RS03970 PF00682 HMGL-like VFU_RS03970 PF08502 LeuA allosteric (dimerisation) domain VFU_RS03980 PF01569 PAP2 superfamily VFU_RS03990 PF03466 LysR substrate binding domain VFU_RS03990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS03995 PF00501 AMP-binding enzyme VFU_RS04000 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VFU_RS04000 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VFU_RS04000 PF00205 Thiamine pyrophosphate enzyme, central domain VFU_RS04005 PF10369 Small subunit of acetolactate synthase VFU_RS04010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VFU_RS04010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VFU_RS04010 PF01842 ACT domain VFU_RS04015 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VFU_RS04020 PF01812 5-formyltetrahydrofolate cyclo-ligase family VFU_RS04025 PF05164 Cell division protein ZapA VFU_RS04030 PF03695 Uncharacterised protein family (UPF0149) VFU_RS04035 PF01494 FAD binding domain VFU_RS04040 PF01494 FAD binding domain VFU_RS04060 PF03937 Flavinator of succinate dehydrogenase VFU_RS04070 PF00890 FAD binding domain VFU_RS04070 PF02910 Fumarate reductase flavoprotein C-term VFU_RS04075 PF08281 Sigma-70, region 4 VFU_RS04075 PF04542 Sigma-70 region 2 VFU_RS04080 PF03873 Anti sigma-E protein RseA, C-terminal domain VFU_RS04080 PF03872 Anti sigma-E protein RseA, N-terminal domain VFU_RS04085 PF17188 MucB/RseB C-terminal domain VFU_RS04085 PF03888 MucB/RseB N-terminal domain VFU_RS04095 PF00679 Elongation factor G C-terminus VFU_RS04095 PF00009 Elongation factor Tu GTP binding domain VFU_RS04095 PF03144 Elongation factor Tu domain 2 VFU_RS04095 PF06421 GTP-binding protein LepA C-terminus VFU_RS04100 PF10502 Signal peptidase, peptidase S26 VFU_RS04105 PF14622 Ribonuclease-III-like VFU_RS04105 PF00035 Double-stranded RNA binding motif VFU_RS04110 PF01926 50S ribosome-binding GTPase VFU_RS04110 PF07650 KH domain VFU_RS04115 PF11967 Recombination protein O N terminal VFU_RS04115 PF02565 Recombination protein O C terminal VFU_RS04120 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VFU_RS04125 PF01648 4'-phosphopantetheinyl transferase superfamily VFU_RS04130 PF01627 Hpt domain VFU_RS04130 PF00672 HAMP domain VFU_RS04130 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS04130 PF00072 Response regulator receiver domain VFU_RS04130 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VFU_RS04130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS04135 PF05958 tRNA (Uracil-5-)-methyltransferase VFU_RS04135 PF01938 TRAM domain VFU_RS04140 PF04607 Region found in RelA / SpoT proteins VFU_RS04140 PF02824 TGS domain VFU_RS04140 PF13291 ACT domain VFU_RS04145 PF03819 MazG nucleotide pyrophosphohydrolase domain VFU_RS04150 PF00117 Glutamine amidotransferase class-I VFU_RS04150 PF06418 CTP synthase N-terminus VFU_RS04155 PF00113 Enolase, C-terminal TIM barrel domain VFU_RS04155 PF03952 Enolase, N-terminal domain VFU_RS04160 PF12627 Probable RNA and SrmB- binding site of polymerase A VFU_RS04160 PF01743 Poly A polymerase head domain VFU_RS04160 PF01966 HD domain VFU_RS04165 PF13401 AAA domain VFU_RS04165 PF01471 Putative peptidoglycan binding domain VFU_RS04175 PF08239 Bacterial SH3 domain VFU_RS04180 PF01384 Phosphate transporter family VFU_RS04185 PF01865 Protein of unknown function DUF47 VFU_RS04190 PF01928 CYTH domain VFU_RS04195 PF07885 Ion channel VFU_RS04200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS04200 PF00672 HAMP domain VFU_RS04200 PF02743 Cache domain VFU_RS04210 PF00294 pfkB family carbohydrate kinase VFU_RS04210 PF01467 Cytidylyltransferase-like VFU_RS04215 PF02321 Outer membrane efflux protein VFU_RS04220 PF00293 NUDIX domain VFU_RS04225 PF06853 Protein of unknown function (DUF1249) VFU_RS04230 PF00149 Calcineurin-like phosphoesterase VFU_RS04235 PF05728 Uncharacterised protein family (UPF0227) VFU_RS04240 PF00986 DNA gyrase B subunit, carboxyl terminus VFU_RS04240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS04240 PF01751 Toprim domain VFU_RS04240 PF00204 DNA gyrase B VFU_RS04245 PF03989 DNA gyrase C-terminal domain, beta-propeller VFU_RS04245 PF00521 DNA gyrase/topoisomerase IV, subunit A VFU_RS04250 PF03884 DNA gyrase inhibitor YacG VFU_RS04255 PF07072 Cell division protein VFU_RS04260 PF01121 Dephospho-CoA kinase VFU_RS04265 PF06750 Bacterial Peptidase A24 N-terminal domain VFU_RS04265 PF01478 Type IV leader peptidase family VFU_RS04270 PF00482 Type II secretion system (T2SS), protein F VFU_RS04275 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VFU_RS04275 PF00437 Type II/IV secretion system protein VFU_RS04280 PF00114 Pilin (bacterial filament) VFU_RS04280 PF07963 Prokaryotic N-terminal methylation motif VFU_RS04285 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VFU_RS04285 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VFU_RS04290 PF01510 N-acetylmuramoyl-L-alanine amidase VFU_RS04295 PF00258 Flavodoxin VFU_RS04300 PF00589 Phage integrase family VFU_RS04300 PF02899 Phage integrase, N-terminal SAM-like domain VFU_RS04305 PF13098 Thioredoxin-like domain VFU_RS04305 PF10411 Disulfide bond isomerase protein N-terminus VFU_RS04310 PF17768 RecJ OB domain VFU_RS04310 PF01368 DHH family VFU_RS04310 PF02272 DHHA1 domain VFU_RS04315 PF07729 FCD domain VFU_RS04315 PF00392 Bacterial regulatory proteins, gntR family VFU_RS04320 PF00456 Transketolase, thiamine diphosphate binding domain VFU_RS04320 PF17831 Pyruvate dehydrogenase E1 component middle domain VFU_RS04325 PF00364 Biotin-requiring enzyme VFU_RS04325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VFU_RS04325 PF02817 e3 binding domain VFU_RS04330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VFU_RS04330 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS04335 PF00440 Bacterial regulatory proteins, tetR family VFU_RS04340 PF00156 Phosphoribosyl transferase domain VFU_RS04345 PF00484 Carbonic anhydrase VFU_RS04350 PF00005 ABC transporter VFU_RS04355 PF01061 ABC-2 type transporter VFU_RS04360 PF02569 Pantoate-beta-alanine ligase VFU_RS04365 PF02548 Ketopantoate hydroxymethyltransferase VFU_RS04370 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VFU_RS04375 PF01743 Poly A polymerase head domain VFU_RS04375 PF12627 Probable RNA and SrmB- binding site of polymerase A VFU_RS04375 PF12626 Polymerase A arginine-rich C-terminus VFU_RS04380 PF00749 tRNA synthetases class I (E and Q), catalytic domain VFU_RS04385 PF01258 Prokaryotic dksA/traR C4-type zinc finger VFU_RS04390 PF17746 SfsA N-terminal OB domain VFU_RS04390 PF03749 Sugar fermentation stimulation protein RE domain VFU_RS04395 PF08482 ATP-dependent helicase C-terminal VFU_RS04395 PF04408 Helicase associated domain (HA2) VFU_RS04395 PF00270 DEAD/DEAH box helicase VFU_RS04395 PF00271 Helicase conserved C-terminal domain VFU_RS04400 PF14814 Bifunctional transglycosylase second domain VFU_RS04400 PF00912 Transglycosylase VFU_RS04400 PF00905 Penicillin binding protein transpeptidase domain VFU_RS04405 PF01734 Patatin-like phospholipase VFU_RS04410 PF00330 Aconitase family (aconitate hydratase) VFU_RS04410 PF06434 Aconitate hydratase 2 N-terminus VFU_RS04410 PF11791 Aconitate B N-terminal domain VFU_RS04415 PF06062 Uncharacterised protein family (UPF0231) VFU_RS04420 PF00543 Nitrogen regulatory protein P-II VFU_RS04425 PF00909 Ammonium Transporter Family VFU_RS04430 PF13416 Bacterial extracellular solute-binding protein VFU_RS04440 PF00005 ABC transporter VFU_RS04445 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VFU_RS04445 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VFU_RS04445 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VFU_RS04445 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VFU_RS04450 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VFU_RS04450 PF06165 Glycosyltransferase family 36 VFU_RS04455 PF00728 Glycosyl hydrolase family 20, catalytic domain VFU_RS04455 PF02838 Glycosyl hydrolase family 20, domain 2 VFU_RS04460 PF01869 BadF/BadG/BcrA/BcrD ATPase family VFU_RS04470 PF00005 ABC transporter VFU_RS04470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VFU_RS04475 PF00005 ABC transporter VFU_RS04475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VFU_RS04480 PF12911 N-terminal TM domain of oligopeptide transport permease C VFU_RS04480 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS04485 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS04490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VFU_RS04495 PF09308 LuxQ, periplasmic VFU_RS04495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS04495 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS04495 PF00072 Response regulator receiver domain VFU_RS04500 PF05175 Methyltransferase small domain VFU_RS04500 PF08468 Methyltransferase small domain N-terminal VFU_RS04505 PF01594 AI-2E family transporter VFU_RS04510 PF00202 Aminotransferase class-III VFU_RS04515 PF01521 Iron-sulphur cluster biosynthesis VFU_RS04525 PF00873 AcrB/AcrD/AcrF family VFU_RS04530 PF01551 Peptidase family M23 VFU_RS04530 PF04225 Opacity-associated protein A LysM-like domain VFU_RS04535 PF00579 tRNA synthetases class I (W and Y) VFU_RS04535 PF01479 S4 domain VFU_RS04545 PF00571 CBS domain VFU_RS04545 PF01769 Divalent cation transporter VFU_RS04545 PF03448 MgtE intracellular N domain VFU_RS04550 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VFU_RS04555 PF13609 Gram-negative porin VFU_RS04560 PF01272 Transcription elongation factor, GreA/GreB, C-term VFU_RS04560 PF03449 Transcription elongation factor, N-terminal VFU_RS04565 PF01985 CRS1 / YhbY (CRM) domain VFU_RS04570 PF01728 FtsJ-like methyltransferase VFU_RS04580 PF00809 Pterin binding enzyme VFU_RS04585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VFU_RS04585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VFU_RS04585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VFU_RS04585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VFU_RS04590 PF03840 Preprotein translocase SecG subunit VFU_RS04610 PF17384 RimP C-terminal SH3 domain VFU_RS04610 PF02576 RimP N-terminal domain VFU_RS04615 PF00575 S1 RNA binding domain VFU_RS04615 PF13184 NusA-like KH domain VFU_RS04615 PF08529 NusA N-terminal domain VFU_RS04620 PF08364 Bacterial translation initiation factor IF-2 associated region VFU_RS04620 PF00009 Elongation factor Tu GTP binding domain VFU_RS04620 PF04760 Translation initiation factor IF-2, N-terminal region VFU_RS04620 PF11987 Translation-initiation factor 2 VFU_RS04625 PF02033 Ribosome-binding factor A VFU_RS04630 PF09157 Pseudouridine synthase II TruB, C-terminal VFU_RS04630 PF01509 TruB family pseudouridylate synthase (N terminal domain) VFU_RS04630 PF16198 tRNA pseudouridylate synthase B C-terminal domain VFU_RS04640 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VFU_RS04640 PF03725 3' exoribonuclease family, domain 2 VFU_RS04640 PF01138 3' exoribonuclease family, domain 1 VFU_RS04640 PF00013 KH domain VFU_RS04640 PF00575 S1 RNA binding domain VFU_RS04645 PF07719 Tetratricopeptide repeat VFU_RS04645 PF13181 Tetratricopeptide repeat VFU_RS04655 PF01554 MatE VFU_RS04660 PF01136 Peptidase family U32 VFU_RS04665 PF01136 Peptidase family U32 VFU_RS04670 PF03707 Bacterial signalling protein N terminal repeat VFU_RS04670 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS04670 PF00563 EAL domain VFU_RS04675 PF02036 SCP-2 sterol transfer family VFU_RS04680 PF13508 Acetyltransferase (GNAT) domain VFU_RS04695 PF03707 Bacterial signalling protein N terminal repeat VFU_RS04695 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS04695 PF00563 EAL domain VFU_RS04700 PF00009 Elongation factor Tu GTP binding domain VFU_RS04700 PF03144 Elongation factor Tu domain 2 VFU_RS04700 PF16658 Class II release factor RF3, C-terminal domain VFU_RS04705 PF00270 DEAD/DEAH box helicase VFU_RS04705 PF00271 Helicase conserved C-terminal domain VFU_RS04710 PF05175 Methyltransferase small domain VFU_RS04715 PF05525 Branched-chain amino acid transport protein VFU_RS04720 PF00472 RF-1 domain VFU_RS04720 PF03462 PCRF domain VFU_RS04725 PF00152 tRNA synthetases class II (D, K and N) VFU_RS04725 PF01336 OB-fold nucleic acid binding domain VFU_RS04730 PF00158 Sigma-54 interaction domain VFU_RS04730 PF02954 Bacterial regulatory protein, Fis family VFU_RS04730 PF00072 Response regulator receiver domain VFU_RS04740 PF00248 Aldo/keto reductase family VFU_RS04750 PF02976 DNA mismatch repair enzyme MutH VFU_RS04755 PF00293 NUDIX domain VFU_RS04760 PF05524 PEP-utilising enzyme, N-terminal VFU_RS04760 PF01590 GAF domain VFU_RS04760 PF02896 PEP-utilising enzyme, TIM barrel domain VFU_RS04760 PF00391 PEP-utilising enzyme, mobile domain VFU_RS04765 PF01925 Sulfite exporter TauE/SafE VFU_RS04770 PF01790 Prolipoprotein diacylglyceryl transferase VFU_RS04775 PF00303 Thymidylate synthase VFU_RS04780 PF02690 Na+/Pi-cotransporter VFU_RS04785 PF03466 LysR substrate binding domain VFU_RS04785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS04790 PF01022 Bacterial regulatory protein, arsR family VFU_RS04795 PF01649 Ribosomal protein S20 VFU_RS04800 PF03023 Lipid II flippase MurJ VFU_RS04805 PF01687 Riboflavin kinase VFU_RS04805 PF06574 FAD synthetase VFU_RS04810 PF00133 tRNA synthetases class I (I, L, M and V) VFU_RS04810 PF06827 Zinc finger found in FPG and IleRS VFU_RS04810 PF08264 Anticodon-binding domain of tRNA VFU_RS04815 PF01252 Signal peptidase (SPase) II VFU_RS04820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VFU_RS04825 PF02401 LytB protein VFU_RS04830 PF02554 Carbon starvation protein CstA VFU_RS04845 PF13580 SIS domain VFU_RS04850 PF03702 Anhydro-N-acetylmuramic acid kinase VFU_RS04855 PF00933 Glycosyl hydrolase family 3 N terminal domain VFU_RS04860 PF04397 LytTr DNA-binding domain VFU_RS04860 PF00072 Response regulator receiver domain VFU_RS04865 PF06580 Histidine kinase VFU_RS04865 PF07694 5TMR of 5TMR-LYT VFU_RS04870 PF00793 DAHP synthetase I family VFU_RS04875 PF02153 Prephenate dehydrogenase VFU_RS04875 PF01817 Chorismate mutase type II VFU_RS04880 PF07238 PilZ domain VFU_RS04890 PF14718 Soluble lytic murein transglycosylase L domain VFU_RS04890 PF01464 Transglycosylase SLT domain VFU_RS04895 PF01371 Trp repressor protein VFU_RS04900 PF01931 Protein of unknown function DUF84 VFU_RS04905 PF00563 EAL domain VFU_RS04905 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS04910 PF13416 Bacterial extracellular solute-binding protein VFU_RS04915 PF01817 Chorismate mutase type II VFU_RS04915 PF00800 Prephenate dehydratase VFU_RS04920 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VFU_RS04925 PF01464 Transglycosylase SLT domain VFU_RS04930 PF13525 Outer membrane lipoprotein VFU_RS04935 PF01479 S4 domain VFU_RS04935 PF00849 RNA pseudouridylate synthase VFU_RS04940 PF02578 Multi-copper polyphenol oxidoreductase laccase VFU_RS04945 PF10431 C-terminal, D2-small domain, of ClpB protein VFU_RS04945 PF07724 AAA domain (Cdc48 subfamily) VFU_RS04945 PF17871 AAA lid domain VFU_RS04945 PF02861 Clp amino terminal domain, pathogenicity island component VFU_RS04945 PF00004 ATPase family associated with various cellular activities (AAA) VFU_RS04955 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VFU_RS04960 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS04965 PF00005 ABC transporter VFU_RS04970 PF09084 NMT1/THI5 like VFU_RS04975 PF01979 Amidohydrolase family VFU_RS05010 PF01738 Dienelactone hydrolase family VFU_RS05020 PF00881 Nitroreductase family VFU_RS05025 PF07690 Major Facilitator Superfamily VFU_RS05030 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VFU_RS05040 PF05175 Methyltransferase small domain VFU_RS05045 PF01722 BolA-like protein VFU_RS05050 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VFU_RS05050 PF11973 NQRA C-terminal domain VFU_RS05055 PF03116 NQR2, RnfD, RnfE family VFU_RS05060 PF04205 FMN-binding domain VFU_RS05065 PF02508 Rnf-Nqr subunit, membrane protein VFU_RS05070 PF02508 Rnf-Nqr subunit, membrane protein VFU_RS05075 PF00175 Oxidoreductase NAD-binding domain VFU_RS05075 PF00111 2Fe-2S iron-sulfur cluster binding domain VFU_RS05075 PF00970 Oxidoreductase FAD-binding domain VFU_RS05080 PF02424 ApbE family VFU_RS05095 PF11798 IMS family HHH motif VFU_RS05095 PF00817 impB/mucB/samB family VFU_RS05095 PF11799 impB/mucB/samB family C-terminal domain VFU_RS05105 PF00563 EAL domain VFU_RS05105 PF00360 Phytochrome region VFU_RS05105 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS05105 PF01590 GAF domain VFU_RS05110 PF00209 Sodium:neurotransmitter symporter family VFU_RS05120 PF08443 RimK-like ATP-grasp domain VFU_RS05120 PF18030 RimK PreATP-grasp domain VFU_RS05125 PF18030 RimK PreATP-grasp domain VFU_RS05125 PF08443 RimK-like ATP-grasp domain VFU_RS05130 PF01546 Peptidase family M20/M25/M40 VFU_RS05130 PF07687 Peptidase dimerisation domain VFU_RS05135 PF00155 Aminotransferase class I and II VFU_RS05135 PF00392 Bacterial regulatory proteins, gntR family VFU_RS05140 PF00202 Aminotransferase class-III VFU_RS05145 PF00171 Aldehyde dehydrogenase family VFU_RS05150 PF03480 Bacterial extracellular solute-binding protein, family 7 VFU_RS05160 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VFU_RS05165 PF00860 Permease family VFU_RS05170 PF00156 Phosphoribosyl transferase domain VFU_RS05175 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VFU_RS05180 PF07417 Sigma factor-binding transcriptional regulator Crl VFU_RS05185 PF01472 PUA domain VFU_RS05185 PF00696 Amino acid kinase family VFU_RS05190 PF00171 Aldehyde dehydrogenase family VFU_RS05195 PF03477 ATP cone domain VFU_RS05200 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VFU_RS05200 PF01872 RibD C-terminal domain VFU_RS05205 PF00677 Lumazine binding domain VFU_RS05210 PF00925 GTP cyclohydrolase II VFU_RS05210 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VFU_RS05215 PF00885 6,7-dimethyl-8-ribityllumazine synthase VFU_RS05220 PF01029 NusB family VFU_RS05225 PF00586 AIR synthase related protein, N-terminal domain VFU_RS05225 PF02769 AIR synthase related protein, C-terminal domain VFU_RS05230 PF04608 Phosphatidylglycerophosphatase A VFU_RS05235 PF11944 Protein of unknown function (DUF3461) VFU_RS05240 PF08335 GlnD PII-uridylyltransferase VFU_RS05240 PF01966 HD domain VFU_RS05240 PF01909 Nucleotidyltransferase domain VFU_RS05245 PF00557 Metallopeptidase family M24 VFU_RS05250 PF00318 Ribosomal protein S2 VFU_RS05255 PF00889 Elongation factor TS VFU_RS05260 PF00696 Amino acid kinase family VFU_RS05265 PF01765 Ribosome recycling factor VFU_RS05270 PF01255 Putative undecaprenyl diphosphate synthase VFU_RS05280 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VFU_RS05280 PF13288 DXP reductoisomerase C-terminal domain VFU_RS05280 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VFU_RS05285 PF02163 Peptidase family M50 VFU_RS05285 PF17820 PDZ domain VFU_RS05290 PF01103 Surface antigen VFU_RS05290 PF07244 Surface antigen variable number repeat VFU_RS05295 PF03938 Outer membrane protein (OmpH-like) VFU_RS05300 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VFU_RS05300 PF00132 Bacterial transferase hexapeptide (six repeats) VFU_RS05305 PF07977 FabA-like domain VFU_RS05310 PF00132 Bacterial transferase hexapeptide (six repeats) VFU_RS05310 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VFU_RS05315 PF02684 Lipid-A-disaccharide synthetase VFU_RS05320 PF01351 Ribonuclease HII VFU_RS05325 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VFU_RS05325 PF07733 Bacterial DNA polymerase III alpha NTPase domain VFU_RS05325 PF14579 Helix-hairpin-helix motif VFU_RS05325 PF01336 OB-fold nucleic acid binding domain VFU_RS05325 PF02811 PHP domain VFU_RS05330 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VFU_RS05335 PF09179 TilS substrate binding domain VFU_RS05335 PF11734 TilS substrate C-terminal domain VFU_RS05335 PF01171 PP-loop family VFU_RS05340 PF00034 Cytochrome c VFU_RS05345 PF00543 Nitrogen regulatory protein P-II VFU_RS05350 PF03372 Endonuclease/Exonuclease/phosphatase family VFU_RS05360 PF01476 LysM domain VFU_RS05360 PF01464 Transglycosylase SLT domain VFU_RS05365 PF00753 Metallo-beta-lactamase superfamily VFU_RS05365 PF16123 Hydroxyacylglutathione hydrolase C-terminus VFU_RS05370 PF08241 Methyltransferase domain VFU_RS05375 PF00075 RNase H VFU_RS05380 PF00929 Exonuclease VFU_RS05390 PF09317 Domain of unknown function (DUF1974) VFU_RS05390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VFU_RS05390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VFU_RS05390 PF02770 Acyl-CoA dehydrogenase, middle domain VFU_RS05395 PF13580 SIS domain VFU_RS05400 PF13230 Glutamine amidotransferases class-II VFU_RS05405 PF00551 Formyl transferase VFU_RS05410 PF00586 AIR synthase related protein, N-terminal domain VFU_RS05410 PF02769 AIR synthase related protein, C-terminal domain VFU_RS05420 PF01479 S4 domain VFU_RS05420 PF00849 RNA pseudouridylate synthase VFU_RS05425 PF01713 Smr domain VFU_RS05445 PF03173 Putative carbohydrate binding domain VFU_RS05445 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VFU_RS05445 PF00728 Glycosyl hydrolase family 20, catalytic domain VFU_RS05445 PF02838 Glycosyl hydrolase family 20, domain 2 VFU_RS05455 PF00403 Heavy-metal-associated domain VFU_RS05460 PF00749 tRNA synthetases class I (E and Q), catalytic domain VFU_RS05465 PF01389 OmpA-like transmembrane domain VFU_RS05465 PF00691 OmpA family VFU_RS05500 PF04316 Anti-sigma-28 factor, FlgM VFU_RS05510 PF01584 CheW-like domain VFU_RS05510 PF00072 Response regulator receiver domain VFU_RS05515 PF01739 CheR methyltransferase, SAM binding domain VFU_RS05515 PF03705 CheR methyltransferase, all-alpha domain VFU_RS05520 PF00460 Flagella basal body rod protein VFU_RS05525 PF00460 Flagella basal body rod protein VFU_RS05525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS05530 PF13860 FlgD Ig-like domain VFU_RS05530 PF13861 FlgD Tudor-like domain VFU_RS05530 PF03963 Flagellar hook capping protein - N-terminal region VFU_RS05535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS05535 PF07559 Flagellar basal body protein FlaE VFU_RS05535 PF00460 Flagella basal body rod protein VFU_RS05540 PF00460 Flagella basal body rod protein VFU_RS05540 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS05545 PF00460 Flagella basal body rod protein VFU_RS05545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS05550 PF02107 Flagellar L-ring protein VFU_RS05555 PF02119 Flagellar P-ring protein VFU_RS05560 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VFU_RS05560 PF10135 Rod binding protein VFU_RS05565 PF07196 Flagellin hook IN motif VFU_RS05565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS05570 PF00669 Bacterial flagellin N-terminal helical region VFU_RS05575 PF00700 Bacterial flagellin C-terminal helical region VFU_RS05575 PF00669 Bacterial flagellin N-terminal helical region VFU_RS05575 PF07196 Flagellin hook IN motif VFU_RS05580 PF00700 Bacterial flagellin C-terminal helical region VFU_RS05580 PF00669 Bacterial flagellin N-terminal helical region VFU_RS05580 PF07196 Flagellin hook IN motif VFU_RS05670 PF01926 50S ribosome-binding GTPase VFU_RS05670 PF06071 Protein of unknown function (DUF933) VFU_RS05680 PF14572 Phosphoribosyl synthetase-associated domain VFU_RS05680 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VFU_RS05685 PF08544 GHMP kinases C terminal VFU_RS05685 PF00288 GHMP kinases N terminal domain VFU_RS05690 PF03550 Outer membrane lipoprotein LolB VFU_RS05695 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VFU_RS05695 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VFU_RS05695 PF01488 Shikimate / quinate 5-dehydrogenase VFU_RS05700 PF03462 PCRF domain VFU_RS05700 PF00472 RF-1 domain VFU_RS05705 PF17827 PrmC N-terminal domain VFU_RS05705 PF13847 Methyltransferase domain VFU_RS05710 PF04247 Invasion gene expression up-regulator, SirB VFU_RS05715 PF13369 Transglutaminase-like superfamily VFU_RS05720 PF00793 DAHP synthetase I family VFU_RS05725 PF00149 Calcineurin-like phosphoesterase VFU_RS05725 PF02872 5'-nucleotidase, C-terminal domain VFU_RS05730 PF04073 Aminoacyl-tRNA editing domain VFU_RS05735 PF00860 Permease family VFU_RS05750 PF03358 NADPH-dependent FMN reductase VFU_RS05755 PF03960 ArsC family VFU_RS05760 PF01435 Peptidase family M48 VFU_RS05760 PF13181 Tetratricopeptide repeat VFU_RS05770 PF01594 AI-2E family transporter VFU_RS05775 PF02743 Cache domain VFU_RS05775 PF00672 HAMP domain VFU_RS05775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS05780 PF00578 AhpC/TSA family VFU_RS05785 PF01842 ACT domain VFU_RS05790 PF00701 Dihydrodipicolinate synthetase family VFU_RS05795 PF06804 NlpB/DapX lipoprotein VFU_RS05805 PF02557 D-alanyl-D-alanine carboxypeptidase VFU_RS05810 PF07687 Peptidase dimerisation domain VFU_RS05810 PF01546 Peptidase family M20/M25/M40 VFU_RS05815 PF03960 ArsC family VFU_RS05825 PF16363 GDP-mannose 4,6 dehydratase VFU_RS05830 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VFU_RS05830 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VFU_RS05835 PF08544 GHMP kinases C terminal VFU_RS05835 PF10509 Galactokinase galactose-binding signature VFU_RS05835 PF00288 GHMP kinases N terminal domain VFU_RS05840 PF00356 Bacterial regulatory proteins, lacI family VFU_RS05850 PF00571 CBS domain VFU_RS05850 PF00478 IMP dehydrogenase / GMP reductase domain VFU_RS05855 PF00474 Sodium:solute symporter family VFU_RS05865 PF11143 Protein of unknown function (DUF2919) VFU_RS05870 PF04261 Dyp-type peroxidase family VFU_RS05875 PF07196 Flagellin hook IN motif VFU_RS05875 PF00669 Bacterial flagellin N-terminal helical region VFU_RS05875 PF00700 Bacterial flagellin C-terminal helical region VFU_RS05880 PF00700 Bacterial flagellin C-terminal helical region VFU_RS05880 PF00669 Bacterial flagellin N-terminal helical region VFU_RS05880 PF07196 Flagellin hook IN motif VFU_RS05885 PF00700 Bacterial flagellin C-terminal helical region VFU_RS05885 PF07196 Flagellin hook IN motif VFU_RS05885 PF00669 Bacterial flagellin N-terminal helical region VFU_RS05890 PF03646 FlaG protein VFU_RS05895 PF07195 Flagellar hook-associated protein 2 C-terminus VFU_RS05895 PF07196 Flagellin hook IN motif VFU_RS05895 PF02465 Flagellar hook-associated protein 2 N-terminus VFU_RS05905 PF02561 Flagellar protein FliS VFU_RS05910 PF06490 Flagellar regulatory protein FleQ VFU_RS05910 PF02954 Bacterial regulatory protein, Fis family VFU_RS05910 PF00158 Sigma-54 interaction domain VFU_RS05915 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS05915 PF13188 PAS domain VFU_RS05915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS05920 PF02954 Bacterial regulatory protein, Fis family VFU_RS05920 PF00072 Response regulator receiver domain VFU_RS05920 PF00158 Sigma-54 interaction domain VFU_RS05925 PF02049 Flagellar hook-basal body complex protein FliE VFU_RS05930 PF01514 Secretory protein of YscJ/FliF family VFU_RS05930 PF08345 Flagellar M-ring protein C-terminal VFU_RS05935 PF14842 FliG N-terminal domain VFU_RS05935 PF01706 FliG C-terminal domain VFU_RS05935 PF14841 FliG middle domain VFU_RS05945 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VFU_RS05945 PF18269 T3SS EscN ATPase C-terminal domain VFU_RS05965 PF02154 Flagellar motor switch protein FliM VFU_RS05965 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VFU_RS05970 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VFU_RS05975 PF04347 Flagellar biosynthesis protein, FliO VFU_RS05980 PF00813 FliP family VFU_RS05985 PF01313 Bacterial export proteins, family 3 VFU_RS05990 PF01311 Bacterial export proteins, family 1 VFU_RS05995 PF01312 FlhB HrpN YscU SpaS Family VFU_RS06000 PF01713 Smr domain VFU_RS06005 PF05175 Methyltransferase small domain VFU_RS06010 PF01264 Chorismate synthase VFU_RS06015 PF03458 UPF0126 domain VFU_RS06020 PF04315 Elongation factor P hydroxylase VFU_RS06025 PF08891 YfcL protein VFU_RS06035 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VFU_RS06035 PF01266 FAD dependent oxidoreductase VFU_RS06040 PF02801 Beta-ketoacyl synthase, C-terminal domain VFU_RS06040 PF00109 Beta-ketoacyl synthase, N-terminal domain VFU_RS06045 PF11890 Domain of unknown function (DUF3410) VFU_RS06045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VFU_RS06045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VFU_RS06050 PF02774 Semialdehyde dehydrogenase, dimerisation domain VFU_RS06050 PF01118 Semialdehyde dehydrogenase, NAD binding domain VFU_RS06055 PF01475 Ferric uptake regulator family VFU_RS06065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS06065 PF03466 LysR substrate binding domain VFU_RS06070 PF03788 LrgA family VFU_RS06075 PF04172 LrgB-like family VFU_RS06080 PF00258 Flavodoxin VFU_RS06090 PF12697 Alpha/beta hydrolase family VFU_RS06095 PF17206 SeqA protein N-terminal domain VFU_RS06095 PF03925 SeqA protein C-terminal domain VFU_RS06100 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VFU_RS06100 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VFU_RS06100 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VFU_RS06100 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VFU_RS06110 PF01784 NIF3 (NGG1p interacting factor 3) VFU_RS06115 PF00285 Citrate synthase, C-terminal domain VFU_RS06120 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VFU_RS06125 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VFU_RS06130 PF02910 Fumarate reductase flavoprotein C-term VFU_RS06130 PF00890 FAD binding domain VFU_RS06135 PF13085 2Fe-2S iron-sulfur cluster binding domain VFU_RS06140 PF00676 Dehydrogenase E1 component VFU_RS06140 PF16078 2-oxoglutarate dehydrogenase N-terminus VFU_RS06140 PF02779 Transketolase, pyrimidine binding domain VFU_RS06140 PF16870 2-oxoglutarate dehydrogenase C-terminal VFU_RS06145 PF00364 Biotin-requiring enzyme VFU_RS06145 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VFU_RS06145 PF02817 e3 binding domain VFU_RS06150 PF08442 ATP-grasp domain VFU_RS06150 PF00549 CoA-ligase VFU_RS06155 PF00549 CoA-ligase VFU_RS06155 PF02629 CoA binding domain VFU_RS06160 PF00950 ABC 3 transport family VFU_RS06165 PF00005 ABC transporter VFU_RS06170 PF01297 Zinc-uptake complex component A periplasmic VFU_RS06175 PF12833 Helix-turn-helix domain VFU_RS06180 PF04023 FeoA domain VFU_RS06185 PF02421 Ferrous iron transport protein B VFU_RS06185 PF07664 Ferrous iron transport protein B C terminus VFU_RS06185 PF07670 Nucleoside recognition VFU_RS06200 PF00750 tRNA synthetases class I (R) VFU_RS06200 PF05746 DALR anticodon binding domain VFU_RS06200 PF03485 Arginyl tRNA synthetase N terminal domain VFU_RS06205 PF06185 YecM protein VFU_RS06210 PF00675 Insulinase (Peptidase family M16) VFU_RS06210 PF05193 Peptidase M16 inactive domain VFU_RS06210 PF16187 Middle or third domain of peptidase_M16 VFU_RS06215 PF00300 Histidine phosphatase superfamily (branch 1) VFU_RS06220 PF00771 FHIPEP family VFU_RS06225 PF00448 SRP54-type protein, GTPase domain VFU_RS06230 PF10609 NUBPL iron-transfer P-loop NTPase VFU_RS06235 PF04542 Sigma-70 region 2 VFU_RS06235 PF04539 Sigma-70 region 3 VFU_RS06235 PF04545 Sigma-70, region 4 VFU_RS06240 PF00072 Response regulator receiver domain VFU_RS06245 PF04344 Chemotaxis phosphatase, CheZ VFU_RS06250 PF01627 Hpt domain VFU_RS06250 PF02895 Signal transducing histidine kinase, homodimeric domain VFU_RS06250 PF01584 CheW-like domain VFU_RS06250 PF00072 Response regulator receiver domain VFU_RS06250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS06255 PF00072 Response regulator receiver domain VFU_RS06255 PF01339 CheB methylesterase VFU_RS06260 PF13614 AAA domain VFU_RS06270 PF01584 CheW-like domain VFU_RS06280 PF00005 ABC transporter VFU_RS06285 PF03379 CcmB protein VFU_RS06290 PF01578 Cytochrome C assembly protein VFU_RS06295 PF04995 Heme exporter protein D (CcmD) VFU_RS06300 PF03100 CcmE VFU_RS06305 PF01578 Cytochrome C assembly protein VFU_RS06305 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VFU_RS06310 PF08534 Redoxin VFU_RS06315 PF03918 Cytochrome C biogenesis protein VFU_RS06320 PF03918 Cytochrome C biogenesis protein VFU_RS06325 PF04333 MlaA lipoprotein VFU_RS06340 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VFU_RS06340 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VFU_RS06345 PF00462 Glutaredoxin VFU_RS06350 PF01751 Toprim domain VFU_RS06350 PF01131 DNA topoisomerase VFU_RS06365 PF00850 Histone deacetylase domain VFU_RS06375 PF00155 Aminotransferase class I and II VFU_RS06380 PF00529 HlyD membrane-fusion protein of T1SS VFU_RS06380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VFU_RS06395 PF07690 Major Facilitator Superfamily VFU_RS06400 PF03466 LysR substrate binding domain VFU_RS06400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS06410 PF00884 Sulfatase VFU_RS06410 PF11893 Domain of unknown function (DUF3413) VFU_RS06415 PF07208 Protein of unknown function (DUF1414) VFU_RS06420 PF04245 37-kD nucleoid-associated bacterial protein VFU_RS06430 PF03553 Na+/H+ antiporter family VFU_RS06435 PF01118 Semialdehyde dehydrogenase, NAD binding domain VFU_RS06435 PF02774 Semialdehyde dehydrogenase, dimerisation domain VFU_RS06440 PF00520 Ion transport protein VFU_RS06440 PF00027 Cyclic nucleotide-binding domain VFU_RS06445 PF01914 MarC family integral membrane protein VFU_RS06450 PF00171 Aldehyde dehydrogenase family VFU_RS06450 PF00465 Iron-containing alcohol dehydrogenase VFU_RS06460 PF00916 Sulfate permease family VFU_RS06460 PF01740 STAS domain VFU_RS06470 PF00575 S1 RNA binding domain VFU_RS06470 PF10150 Ribonuclease E/G family VFU_RS06470 PF12111 Polyribonucleotide phosphorylase C terminal VFU_RS06475 PF01479 S4 domain VFU_RS06475 PF00849 RNA pseudouridylate synthase VFU_RS06480 PF02545 Maf-like protein VFU_RS06485 PF02620 Large ribosomal RNA subunit accumulation protein YceD VFU_RS06490 PF01783 Ribosomal L32p protein family VFU_RS06495 PF02504 Fatty acid synthesis protein VFU_RS06500 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VFU_RS06500 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VFU_RS06505 PF00698 Acyl transferase domain VFU_RS06515 PF00550 Phosphopantetheine attachment site VFU_RS06520 PF00109 Beta-ketoacyl synthase, N-terminal domain VFU_RS06520 PF02801 Beta-ketoacyl synthase, C-terminal domain VFU_RS06525 PF01063 Amino-transferase class IV VFU_RS06530 PF02618 YceG-like family VFU_RS06535 PF02223 Thymidylate kinase VFU_RS06540 PF09115 DNA polymerase III, delta subunit, C terminal VFU_RS06545 PF01026 TatD related DNase VFU_RS06550 PF02378 Phosphotransferase system, EIIC VFU_RS06550 PF00367 phosphotransferase system, EIIB VFU_RS06550 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VFU_RS06560 PF00367 phosphotransferase system, EIIB VFU_RS06560 PF02378 Phosphotransferase system, EIIC VFU_RS06570 PF00209 Sodium:neurotransmitter symporter family VFU_RS06585 PF01734 Patatin-like phospholipase VFU_RS06590 PF00224 Pyruvate kinase, barrel domain VFU_RS06590 PF02887 Pyruvate kinase, alpha/beta domain VFU_RS06595 PF00480 ROK family VFU_RS06600 PF01584 CheW-like domain VFU_RS06600 PF00072 Response regulator receiver domain VFU_RS06605 PF07733 Bacterial DNA polymerase III alpha NTPase domain VFU_RS06605 PF01336 OB-fold nucleic acid binding domain VFU_RS06605 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VFU_RS06605 PF14579 Helix-hairpin-helix motif VFU_RS06605 PF02811 PHP domain VFU_RS06620 PF00106 short chain dehydrogenase VFU_RS06625 PF01343 Peptidase family S49 VFU_RS06625 PF08496 Peptidase family S49 N-terminal VFU_RS06645 PF13286 Phosphohydrolase-associated domain VFU_RS06645 PF01966 HD domain VFU_RS06655 PF00155 Aminotransferase class I and II VFU_RS06660 PF00425 chorismate binding enzyme VFU_RS06665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VFU_RS06665 PF16582 Middle domain of thiamine pyrophosphate VFU_RS06665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VFU_RS06670 PF12697 Alpha/beta hydrolase family VFU_RS06680 PF13378 Enolase C-terminal domain-like VFU_RS06685 PF13193 AMP-binding enzyme C-terminal domain VFU_RS06685 PF00501 AMP-binding enzyme VFU_RS06695 PF03601 Conserved hypothetical protein 698 VFU_RS06700 PF07690 Major Facilitator Superfamily VFU_RS06720 PF06445 GyrI-like small molecule binding domain VFU_RS06725 PF01464 Transglycosylase SLT domain VFU_RS06725 PF01476 LysM domain VFU_RS06745 PF00460 Flagella basal body rod protein VFU_RS06750 PF00460 Flagella basal body rod protein VFU_RS06750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS06755 PF03963 Flagellar hook capping protein - N-terminal region VFU_RS06755 PF13861 FlgD Tudor-like domain VFU_RS06755 PF13860 FlgD Ig-like domain VFU_RS06760 PF07559 Flagellar basal body protein FlaE VFU_RS06760 PF00460 Flagella basal body rod protein VFU_RS06760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS06765 PF00460 Flagella basal body rod protein VFU_RS06765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS06770 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS06770 PF00460 Flagella basal body rod protein VFU_RS06775 PF02107 Flagellar L-ring protein VFU_RS06780 PF02119 Flagellar P-ring protein VFU_RS06785 PF10135 Rod binding protein VFU_RS06785 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VFU_RS06790 PF00460 Flagella basal body rod protein VFU_RS06790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS06830 PF04962 KduI/IolB family VFU_RS06835 PF03480 Bacterial extracellular solute-binding protein, family 7 VFU_RS06845 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VFU_RS06880 PF04170 NlpE N-terminal domain VFU_RS06890 PF13677 Membrane MotB of proton-channel complex MotA/MotB VFU_RS06890 PF00691 OmpA family VFU_RS06895 PF01618 MotA/TolQ/ExbB proton channel family VFU_RS06900 PF04542 Sigma-70 region 2 VFU_RS06900 PF04545 Sigma-70, region 4 VFU_RS06905 PF03748 Flagellar basal body-associated protein FliL VFU_RS06920 PF02561 Flagellar protein FliS VFU_RS06925 PF07196 Flagellin hook IN motif VFU_RS06925 PF07195 Flagellar hook-associated protein 2 C-terminus VFU_RS06925 PF02465 Flagellar hook-associated protein 2 N-terminus VFU_RS06930 PF00700 Bacterial flagellin C-terminal helical region VFU_RS06930 PF00669 Bacterial flagellin N-terminal helical region VFU_RS06940 PF00771 FHIPEP family VFU_RS06945 PF01312 FlhB HrpN YscU SpaS Family VFU_RS06950 PF01311 Bacterial export proteins, family 1 VFU_RS06955 PF01313 Bacterial export proteins, family 3 VFU_RS06960 PF00813 FliP family VFU_RS06965 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VFU_RS06975 PF05736 OprF membrane domain VFU_RS06975 PF00691 OmpA family VFU_RS06980 PF00072 Response regulator receiver domain VFU_RS06980 PF02954 Bacterial regulatory protein, Fis family VFU_RS06980 PF00158 Sigma-54 interaction domain VFU_RS06985 PF02049 Flagellar hook-basal body complex protein FliE VFU_RS06990 PF08345 Flagellar M-ring protein C-terminal VFU_RS06990 PF01514 Secretory protein of YscJ/FliF family VFU_RS07005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VFU_RS07005 PF18269 T3SS EscN ATPase C-terminal domain VFU_RS07015 PF00291 Pyridoxal-phosphate dependent enzyme VFU_RS07020 PF01037 Lrp/AsnC ligand binding domain VFU_RS07020 PF13404 AsnC-type helix-turn-helix domain VFU_RS07030 PF09619 Type III secretion system lipoprotein chaperone (YscW) VFU_RS07035 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VFU_RS07045 PF00563 EAL domain VFU_RS07045 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS07045 PF08448 PAS fold VFU_RS07050 PF07690 Major Facilitator Superfamily VFU_RS07055 PF00672 HAMP domain VFU_RS07055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS07055 PF12729 Four helix bundle sensory module for signal transduction VFU_RS07060 PF00593 TonB dependent receptor VFU_RS07060 PF07715 TonB-dependent Receptor Plug Domain VFU_RS07065 PF01497 Periplasmic binding protein VFU_RS07075 PF11806 Domain of unknown function (DUF3327) VFU_RS07075 PF00756 Putative esterase VFU_RS07085 PF00440 Bacterial regulatory proteins, tetR family VFU_RS07090 PF01161 Phosphatidylethanolamine-binding protein VFU_RS07095 PF12833 Helix-turn-helix domain VFU_RS07115 PF00873 AcrB/AcrD/AcrF family VFU_RS07120 PF11604 Copper binding periplasmic protein CusF VFU_RS07140 PF00270 DEAD/DEAH box helicase VFU_RS07140 PF00271 Helicase conserved C-terminal domain VFU_RS07145 PF00884 Sulfatase VFU_RS07150 PF01219 Prokaryotic diacylglycerol kinase VFU_RS07155 PF08019 Phosphoethanolamine transferase EptA/EptB VFU_RS07155 PF00884 Sulfatase VFU_RS07160 PF00196 Bacterial regulatory proteins, luxR family VFU_RS07160 PF00072 Response regulator receiver domain VFU_RS07165 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS07165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS07170 PF13247 4Fe-4S dicluster domain VFU_RS07175 PF03916 Polysulphide reductase, NrfD VFU_RS07180 PF01568 Molydopterin dinucleotide binding domain VFU_RS07180 PF00384 Molybdopterin oxidoreductase VFU_RS07180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VFU_RS07190 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS07190 PF00563 EAL domain VFU_RS07190 PF03707 Bacterial signalling protein N terminal repeat VFU_RS07195 PF00155 Aminotransferase class I and II VFU_RS07195 PF00392 Bacterial regulatory proteins, gntR family VFU_RS07200 PF01654 Cytochrome bd terminal oxidase subunit I VFU_RS07205 PF02322 Cytochrome bd terminal oxidase subunit II VFU_RS07235 PF02254 TrkA-N domain VFU_RS07235 PF00999 Sodium/hydrogen exchanger family VFU_RS07240 PF02525 Flavodoxin-like fold VFU_RS07245 PF07690 Major Facilitator Superfamily VFU_RS07250 PF00857 Isochorismatase family VFU_RS07250 PF00550 Phosphopantetheine attachment site VFU_RS07255 PF13193 AMP-binding enzyme C-terminal domain VFU_RS07255 PF00501 AMP-binding enzyme VFU_RS07260 PF00425 chorismate binding enzyme VFU_RS07270 PF00793 DAHP synthetase I family VFU_RS07275 PF08242 Methyltransferase domain VFU_RS07275 PF00668 Condensation domain VFU_RS07275 PF00550 Phosphopantetheine attachment site VFU_RS07275 PF00501 AMP-binding enzyme VFU_RS07280 PF00668 Condensation domain VFU_RS07280 PF13193 AMP-binding enzyme C-terminal domain VFU_RS07280 PF00501 AMP-binding enzyme VFU_RS07280 PF00550 Phosphopantetheine attachment site VFU_RS07285 PF00296 Luciferase-like monooxygenase VFU_RS07290 PF01497 Periplasmic binding protein VFU_RS07295 PF01032 FecCD transport family VFU_RS07300 PF01032 FecCD transport family VFU_RS07305 PF07715 TonB-dependent Receptor Plug Domain VFU_RS07315 PF00975 Thioesterase domain VFU_RS07315 PF00668 Condensation domain VFU_RS07315 PF00550 Phosphopantetheine attachment site VFU_RS07315 PF13193 AMP-binding enzyme C-terminal domain VFU_RS07315 PF00501 AMP-binding enzyme VFU_RS07320 PF00005 ABC transporter VFU_RS07330 PF00356 Bacterial regulatory proteins, lacI family VFU_RS07335 PF00232 Glycosyl hydrolase family 1 VFU_RS07340 PF02678 Pirin VFU_RS07340 PF17954 Quercetinase C-terminal cupin domain VFU_RS07345 PF02581 Thiamine monophosphate synthase VFU_RS07350 PF02110 Hydroxyethylthiazole kinase family VFU_RS07355 PF08543 Phosphomethylpyrimidine kinase VFU_RS07365 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS07365 PF12911 N-terminal TM domain of oligopeptide transport permease C VFU_RS07370 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS07375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VFU_RS07385 PF02321 Outer membrane efflux protein VFU_RS07390 PF00529 HlyD membrane-fusion protein of T1SS VFU_RS07390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VFU_RS07395 PF07690 Major Facilitator Superfamily VFU_RS07400 PF12833 Helix-turn-helix domain VFU_RS07400 PF06445 GyrI-like small molecule binding domain VFU_RS07405 PF00593 TonB dependent receptor VFU_RS07405 PF07715 TonB-dependent Receptor Plug Domain VFU_RS07410 PF00486 Transcriptional regulatory protein, C terminal VFU_RS07410 PF00072 Response regulator receiver domain VFU_RS07415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS07415 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS07420 PF00367 phosphotransferase system, EIIB VFU_RS07420 PF02378 Phosphotransferase system, EIIC VFU_RS07430 PF00356 Bacterial regulatory proteins, lacI family VFU_RS07435 PF00251 Glycosyl hydrolases family 32 N-terminal domain VFU_RS07435 PF08244 Glycosyl hydrolases family 32 C terminal VFU_RS07440 PF11471 Maltoporin periplasmic N-terminal extension VFU_RS07440 PF02264 LamB porin VFU_RS07445 PF00294 pfkB family carbohydrate kinase VFU_RS07455 PF00109 Beta-ketoacyl synthase, N-terminal domain VFU_RS07455 PF02801 Beta-ketoacyl synthase, C-terminal domain VFU_RS07470 PF02801 Beta-ketoacyl synthase, C-terminal domain VFU_RS07470 PF00109 Beta-ketoacyl synthase, N-terminal domain VFU_RS07495 PF00221 Aromatic amino acid lyase VFU_RS07500 PF00535 Glycosyl transferase family 2 VFU_RS07520 PF00550 Phosphopantetheine attachment site VFU_RS07525 PF00550 Phosphopantetheine attachment site VFU_RS07530 PF13193 AMP-binding enzyme C-terminal domain VFU_RS07530 PF00501 AMP-binding enzyme VFU_RS07530 PF01553 Acyltransferase VFU_RS07550 PF04820 Tryptophan halogenase VFU_RS07555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VFU_RS07560 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS07565 PF12911 N-terminal TM domain of oligopeptide transport permease C VFU_RS07565 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS07570 PF00005 ABC transporter VFU_RS07570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VFU_RS07575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VFU_RS07575 PF00005 ABC transporter VFU_RS07585 PF13409 Glutathione S-transferase, N-terminal domain VFU_RS07590 PF13194 Domain of unknown function (DUF4010) VFU_RS07595 PF07085 DRTGG domain VFU_RS07595 PF01515 Phosphate acetyl/butaryl transferase VFU_RS07600 PF00871 Acetokinase family VFU_RS07605 PF04217 Protein of unknown function, DUF412 VFU_RS07615 PF02653 Branched-chain amino acid transport system / permease component VFU_RS07620 PF00005 ABC transporter VFU_RS07625 PF05230 MASE2 domain VFU_RS07625 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS07630 PF01207 Dihydrouridine synthase (Dus) VFU_RS07635 PF07963 Prokaryotic N-terminal methylation motif VFU_RS07640 PF07516 SecA Wing and Scaffold domain VFU_RS07640 PF01043 SecA preprotein cross-linking domain VFU_RS07640 PF07517 SecA DEAD-like domain VFU_RS07640 PF02810 SEC-C motif VFU_RS07645 PF03548 Outer membrane lipoprotein carrier protein LolA VFU_RS07650 PF12002 MgsA AAA+ ATPase C terminal VFU_RS07650 PF00004 ATPase family associated with various cellular activities (AAA) VFU_RS07650 PF16193 AAA C-terminal domain VFU_RS07655 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VFU_RS07655 PF02403 Seryl-tRNA synthetase N-terminal domain VFU_RS07665 PF04324 BFD-like [2Fe-2S] binding domain VFU_RS07665 PF01568 Molydopterin dinucleotide binding domain VFU_RS07665 PF00384 Molybdopterin oxidoreductase VFU_RS07665 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VFU_RS07670 PF10414 Sirohaem synthase dimerisation region VFU_RS07670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VFU_RS07670 PF14824 Sirohaem biosynthesis protein central VFU_RS07675 PF00591 Glycosyl transferase family, a/b domain VFU_RS07675 PF02885 Glycosyl transferase family, helical bundle domain VFU_RS07680 PF00072 Response regulator receiver domain VFU_RS07680 PF03861 ANTAR domain VFU_RS07685 PF00005 ABC transporter VFU_RS07690 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS07695 PF00005 ABC transporter VFU_RS07700 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS07700 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VFU_RS07700 PF13806 Rieske-like [2Fe-2S] domain VFU_RS07700 PF04324 BFD-like [2Fe-2S] binding domain VFU_RS07700 PF18267 Rubredoxin NAD+ reductase C-terminal domain VFU_RS07700 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VFU_RS07710 PF00202 Aminotransferase class-III VFU_RS07720 PF00155 Aminotransferase class I and II VFU_RS07725 PF08241 Methyltransferase domain VFU_RS07735 PF01435 Peptidase family M48 VFU_RS07745 PF00106 short chain dehydrogenase VFU_RS07780 PF08328 Adenylosuccinate lyase C-terminal VFU_RS07780 PF00206 Lyase VFU_RS07785 PF04356 Protein of unknown function (DUF489) VFU_RS07795 PF00294 pfkB family carbohydrate kinase VFU_RS07800 PF00816 H-NS histone family VFU_RS07805 PF03553 Na+/H+ antiporter family VFU_RS07810 PF00158 Sigma-54 interaction domain VFU_RS07810 PF02954 Bacterial regulatory protein, Fis family VFU_RS07810 PF00072 Response regulator receiver domain VFU_RS07815 PF01634 ATP phosphoribosyltransferase VFU_RS07815 PF08029 HisG, C-terminal domain VFU_RS07820 PF00815 Histidinol dehydrogenase VFU_RS07825 PF00155 Aminotransferase class I and II VFU_RS07830 PF00475 Imidazoleglycerol-phosphate dehydratase VFU_RS07830 PF08645 Polynucleotide kinase 3 phosphatase VFU_RS07835 PF00117 Glutamine amidotransferase class-I VFU_RS07840 PF00977 Histidine biosynthesis protein VFU_RS07845 PF00977 Histidine biosynthesis protein VFU_RS07850 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VFU_RS07850 PF01502 Phosphoribosyl-AMP cyclohydrolase VFU_RS07855 PF00849 RNA pseudouridylate synthase VFU_RS07860 PF03971 Monomeric isocitrate dehydrogenase VFU_RS07865 PF10400 Virulence activator alpha C-term VFU_RS07865 PF03551 Transcriptional regulator PadR-like family VFU_RS07870 PF07690 Major Facilitator Superfamily VFU_RS07875 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VFU_RS07875 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS07880 PF00313 'Cold-shock' DNA-binding domain VFU_RS07885 PF02617 ATP-dependent Clp protease adaptor protein ClpS VFU_RS07890 PF00004 ATPase family associated with various cellular activities (AAA) VFU_RS07890 PF17871 AAA lid domain VFU_RS07890 PF02861 Clp amino terminal domain, pathogenicity island component VFU_RS07890 PF10431 C-terminal, D2-small domain, of ClpB protein VFU_RS07890 PF07724 AAA domain (Cdc48 subfamily) VFU_RS07895 PF01176 Translation initiation factor 1A / IF-1 VFU_RS07900 PF04377 Arginine-tRNA-protein transferase, C terminus VFU_RS07900 PF04376 Arginine-tRNA-protein transferase, N terminus VFU_RS07905 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VFU_RS07915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VFU_RS07920 PF10692 Protein of unknown function (DUF2498) VFU_RS07925 PF01396 Topoisomerase DNA binding C4 zinc finger VFU_RS07925 PF01751 Toprim domain VFU_RS07925 PF01131 DNA topoisomerase VFU_RS07925 PF08272 Topoisomerase I zinc-ribbon-like VFU_RS07930 PF00072 Response regulator receiver domain VFU_RS07930 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS07935 PF00483 Nucleotidyl transferase VFU_RS07940 PF00534 Glycosyl transferases group 1 VFU_RS07940 PF08323 Starch synthase catalytic domain VFU_RS07960 PF04994 TfoX C-terminal domain VFU_RS07960 PF04993 TfoX N-terminal domain VFU_RS07965 PF00356 Bacterial regulatory proteins, lacI family VFU_RS07970 PF02613 Nitrate reductase delta subunit VFU_RS07975 PF00486 Transcriptional regulatory protein, C terminal VFU_RS07975 PF00072 Response regulator receiver domain VFU_RS07980 PF02698 DUF218 domain VFU_RS07990 PF17192 MukF middle domain VFU_RS07990 PF03882 MukF winged-helix domain VFU_RS07990 PF17193 MukF C-terminal domain VFU_RS07995 PF04288 MukE-like family VFU_RS08000 PF04310 MukB N-terminal VFU_RS08000 PF16330 MukB hinge domain VFU_RS08015 PF08443 RimK-like ATP-grasp domain VFU_RS08015 PF18030 RimK PreATP-grasp domain VFU_RS08020 PF08003 Protein of unknown function (DUF1698) VFU_RS08025 PF13649 Methyltransferase domain VFU_RS08030 PF01904 Protein of unknown function DUF72 VFU_RS08035 PF00152 tRNA synthetases class II (D, K and N) VFU_RS08035 PF01336 OB-fold nucleic acid binding domain VFU_RS08035 PF02938 GAD domain VFU_RS08040 PF00265 Thymidine kinase VFU_RS08045 PF02698 DUF218 domain VFU_RS08050 PF01370 NAD dependent epimerase/dehydratase family VFU_RS08055 PF03466 LysR substrate binding domain VFU_RS08055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS08070 PF01226 Formate/nitrite transporter VFU_RS08075 PF03649 Uncharacterised protein family (UPF0014) VFU_RS08080 PF06796 Periplasmic nitrate reductase protein NapE VFU_RS08085 PF03264 NapC/NirT cytochrome c family, N-terminal region VFU_RS08090 PF01568 Molydopterin dinucleotide binding domain VFU_RS08090 PF18364 Molybdopterin oxidoreductase N-terminal domain VFU_RS08090 PF00384 Molybdopterin oxidoreductase VFU_RS08100 PF16875 Glycosyl hydrolase family 36 N-terminal domain VFU_RS08100 PF16874 Glycosyl hydrolase family 36 C-terminal domain VFU_RS08110 PF01368 DHH family VFU_RS08110 PF02833 DHHA2 domain VFU_RS08125 PF00005 ABC transporter VFU_RS08130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VFU_RS08130 PF00005 ABC transporter VFU_RS08135 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS08135 PF12911 N-terminal TM domain of oligopeptide transport permease C VFU_RS08140 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS08145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VFU_RS08150 PF00158 Sigma-54 interaction domain VFU_RS08150 PF02954 Bacterial regulatory protein, Fis family VFU_RS08155 PF04012 PspA/IM30 family VFU_RS08160 PF06667 Phage shock protein B VFU_RS08170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VFU_RS08175 PF13533 Biotin-lipoyl like VFU_RS08180 PF00873 AcrB/AcrD/AcrF family VFU_RS08185 PF03352 Methyladenine glycosylase VFU_RS08190 PF01053 Cys/Met metabolism PLP-dependent enzyme VFU_RS08195 PF13396 Phospholipase_D-nuclease N-terminal VFU_RS08195 PF13091 PLD-like domain VFU_RS08200 PF00209 Sodium:neurotransmitter symporter family VFU_RS08205 PF10415 Fumarase C C-terminus VFU_RS08205 PF00206 Lyase VFU_RS08210 PF00849 RNA pseudouridylate synthase VFU_RS08220 PF00701 Dihydrodipicolinate synthetase family VFU_RS08225 PF01066 CDP-alcohol phosphatidyltransferase VFU_RS08230 PF00005 ABC transporter VFU_RS08235 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS08240 PF13416 Bacterial extracellular solute-binding protein VFU_RS08250 PF06945 Protein of unknown function (DUF1289) VFU_RS08265 PF00005 ABC transporter VFU_RS08275 PF03222 Tryptophan/tyrosine permease family VFU_RS08285 PF01717 Cobalamin-independent synthase, Catalytic domain VFU_RS08290 PF00313 'Cold-shock' DNA-binding domain VFU_RS08315 PF01380 SIS domain VFU_RS08315 PF01418 Helix-turn-helix domain, rpiR family VFU_RS08330 PF03606 C4-dicarboxylate anaerobic carrier VFU_RS08335 PF00206 Lyase VFU_RS08335 PF10397 Adenylosuccinate lyase C-terminus VFU_RS08340 PF03949 Malic enzyme, NAD binding domain VFU_RS08340 PF00390 Malic enzyme, N-terminal domain VFU_RS08345 PF00583 Acetyltransferase (GNAT) family VFU_RS08355 PF01386 Ribosomal L25p family VFU_RS08360 PF00672 HAMP domain VFU_RS08360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS08360 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS08365 PF00486 Transcriptional regulatory protein, C terminal VFU_RS08365 PF00072 Response regulator receiver domain VFU_RS08375 PF04851 Type III restriction enzyme, res subunit VFU_RS08375 PF00271 Helicase conserved C-terminal domain VFU_RS08380 PF01479 S4 domain VFU_RS08380 PF00849 RNA pseudouridylate synthase VFU_RS08385 PF07690 Major Facilitator Superfamily VFU_RS08395 PF11066 Protein of unknown function (DUF2867) VFU_RS08395 PF13460 NAD(P)H-binding VFU_RS08400 PF01554 MatE VFU_RS08405 PF00005 ABC transporter VFU_RS08420 PF06965 Na+/H+ antiporter 1 VFU_RS08425 PF00691 OmpA family VFU_RS08425 PF05736 OprF membrane domain VFU_RS08430 PF02321 Outer membrane efflux protein VFU_RS08440 PF00202 Aminotransferase class-III VFU_RS08445 PF16653 Saccharopine dehydrogenase C-terminal domain VFU_RS08445 PF03435 Saccharopine dehydrogenase NADP binding domain VFU_RS08455 PF00672 HAMP domain VFU_RS08455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS08455 PF02743 Cache domain VFU_RS08465 PF03480 Bacterial extracellular solute-binding protein, family 7 VFU_RS08475 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VFU_RS08480 PF01202 Shikimate kinase VFU_RS08485 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VFU_RS08485 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VFU_RS08495 PF00994 Probable molybdopterin binding domain VFU_RS08505 PF00175 Oxidoreductase NAD-binding domain VFU_RS08505 PF00111 2Fe-2S iron-sulfur cluster binding domain VFU_RS08505 PF00970 Oxidoreductase FAD-binding domain VFU_RS08510 PF00268 Ribonucleotide reductase, small chain VFU_RS08515 PF02867 Ribonucleotide reductase, barrel domain VFU_RS08515 PF03477 ATP cone domain VFU_RS08515 PF00317 Ribonucleotide reductase, all-alpha domain VFU_RS08525 PF03989 DNA gyrase C-terminal domain, beta-propeller VFU_RS08525 PF00521 DNA gyrase/topoisomerase IV, subunit A VFU_RS08535 PF00925 GTP cyclohydrolase II VFU_RS08560 PF01471 Putative peptidoglycan binding domain VFU_RS08560 PF03734 L,D-transpeptidase catalytic domain VFU_RS08565 PF05951 Bacterial protein of unknown function (DUF882) VFU_RS08570 PF00753 Metallo-beta-lactamase superfamily VFU_RS08585 PF03480 Bacterial extracellular solute-binding protein, family 7 VFU_RS08595 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VFU_RS08600 PF07730 Histidine kinase VFU_RS08600 PF17200 Single Cache domain 2 VFU_RS08605 PF00196 Bacterial regulatory proteins, luxR family VFU_RS08605 PF00072 Response regulator receiver domain VFU_RS08610 PF01047 MarR family VFU_RS08615 PF02028 BCCT, betaine/carnitine/choline family transporter VFU_RS08620 PF17200 Single Cache domain 2 VFU_RS08620 PF00672 HAMP domain VFU_RS08620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS08625 PF14579 Helix-hairpin-helix motif VFU_RS08625 PF07733 Bacterial DNA polymerase III alpha NTPase domain VFU_RS08625 PF02811 PHP domain VFU_RS08625 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VFU_RS08625 PF00929 Exonuclease VFU_RS08640 PF00155 Aminotransferase class I and II VFU_RS08655 PF01336 OB-fold nucleic acid binding domain VFU_RS08655 PF00152 tRNA synthetases class II (D, K and N) VFU_RS08660 PF00672 HAMP domain VFU_RS08660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS08665 PF01242 6-pyruvoyl tetrahydropterin synthase VFU_RS08670 PF00561 alpha/beta hydrolase fold VFU_RS08680 PF02321 Outer membrane efflux protein VFU_RS08685 PF12704 MacB-like periplasmic core domain VFU_RS08685 PF00005 ABC transporter VFU_RS08685 PF02687 FtsX-like permease family VFU_RS08690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VFU_RS08695 PF03313 Serine dehydratase alpha chain VFU_RS08695 PF03315 Serine dehydratase beta chain VFU_RS08700 PF03222 Tryptophan/tyrosine permease family VFU_RS08705 PF00293 NUDIX domain VFU_RS08715 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS08715 PF00072 Response regulator receiver domain VFU_RS08715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS08715 PF09308 LuxQ, periplasmic VFU_RS08720 PF00425 chorismate binding enzyme VFU_RS08720 PF04715 Anthranilate synthase component I, N terminal region VFU_RS08735 PF04317 YcjX-like family, DUF463 VFU_RS08740 PF05128 Domain of unknown function (DUF697) VFU_RS08745 PF18024 Helix-turn-helix domain VFU_RS08745 PF00158 Sigma-54 interaction domain VFU_RS08750 PF13302 Acetyltransferase (GNAT) domain VFU_RS08765 PF00892 EamA-like transporter family VFU_RS08770 PF00939 Sodium:sulfate symporter transmembrane region VFU_RS08775 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS08775 PF00497 Bacterial extracellular solute-binding proteins, family 3 VFU_RS08775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS08780 PF00072 Response regulator receiver domain VFU_RS08780 PF00158 Sigma-54 interaction domain VFU_RS08780 PF02954 Bacterial regulatory protein, Fis family VFU_RS08785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS08785 PF03466 LysR substrate binding domain VFU_RS08790 PF03992 Antibiotic biosynthesis monooxygenase VFU_RS08795 PF00881 Nitroreductase family VFU_RS08800 PF04400 (Na+)-NQR maturation NqrM VFU_RS08815 PF00703 Glycosyl hydrolases family 2 VFU_RS08815 PF02837 Glycosyl hydrolases family 2, sugar binding domain VFU_RS08815 PF02929 Beta galactosidase small chain VFU_RS08815 PF16353 Domain of unknown function(DUF4981) VFU_RS08815 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VFU_RS08820 PF13407 Periplasmic binding protein domain VFU_RS08825 PF00005 ABC transporter VFU_RS08830 PF02653 Branched-chain amino acid transport system / permease component VFU_RS08840 PF01970 Tripartite tricarboxylate transporter TctA family VFU_RS08860 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VFU_RS08860 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VFU_RS08860 PF12833 Helix-turn-helix domain VFU_RS08860 PF02805 Metal binding domain of Ada VFU_RS08875 PF00285 Citrate synthase, C-terminal domain VFU_RS08880 PF00694 Aconitase C-terminal domain VFU_RS08880 PF00330 Aconitase family (aconitate hydratase) VFU_RS08885 PF04303 PrpF protein VFU_RS08890 PF13193 AMP-binding enzyme C-terminal domain VFU_RS08890 PF00501 AMP-binding enzyme VFU_RS08890 PF16177 Acetyl-coenzyme A synthetase N-terminus VFU_RS08900 PF00529 HlyD membrane-fusion protein of T1SS VFU_RS08900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VFU_RS08905 PF07690 Major Facilitator Superfamily VFU_RS08920 PF00501 AMP-binding enzyme VFU_RS08920 PF13193 AMP-binding enzyme C-terminal domain VFU_RS08920 PF00550 Phosphopantetheine attachment site VFU_RS08920 PF00668 Condensation domain VFU_RS08925 PF01546 Peptidase family M20/M25/M40 VFU_RS08925 PF07687 Peptidase dimerisation domain VFU_RS08930 PF12792 CSS motif domain associated with EAL VFU_RS08930 PF00563 EAL domain VFU_RS08935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VFU_RS08940 PF04209 homogentisate 1,2-dioxygenase VFU_RS08950 PF02798 Glutathione S-transferase, N-terminal domain VFU_RS08950 PF14497 Glutathione S-transferase, C-terminal domain VFU_RS08970 PF04074 YhcH/YjgK/YiaL VFU_RS08980 PF08220 DeoR-like helix-turn-helix domain VFU_RS08980 PF00455 DeoR C terminal sensor domain VFU_RS08990 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS08995 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS09000 PF13416 Bacterial extracellular solute-binding protein VFU_RS09005 PF00056 lactate/malate dehydrogenase, NAD binding domain VFU_RS09005 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VFU_RS09015 PF08212 Lipocalin-like domain VFU_RS09025 PF01618 MotA/TolQ/ExbB proton channel family VFU_RS09030 PF01618 MotA/TolQ/ExbB proton channel family VFU_RS09035 PF02472 Biopolymer transport protein ExbD/TolR VFU_RS09040 PF03544 Gram-negative bacterial TonB protein C-terminal VFU_RS09055 PF01734 Patatin-like phospholipase VFU_RS09060 PF01068 ATP dependent DNA ligase domain VFU_RS09060 PF14743 DNA ligase OB-like domain VFU_RS09070 PF01554 MatE VFU_RS09075 PF00677 Lumazine binding domain VFU_RS09085 PF03881 Fructosamine kinase VFU_RS09095 PF00877 NlpC/P60 family VFU_RS09100 PF00672 HAMP domain VFU_RS09100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS09100 PF02743 Cache domain VFU_RS09110 PF03942 DTW domain VFU_RS09115 PF00480 ROK family VFU_RS09125 PF03453 MoeA N-terminal region (domain I and II) VFU_RS09125 PF03454 MoeA C-terminal region (domain IV) VFU_RS09125 PF00994 Probable molybdopterin binding domain VFU_RS09130 PF12804 MobA-like NTP transferase domain VFU_RS09135 PF00005 ABC transporter VFU_RS09135 PF08402 TOBE domain VFU_RS09140 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS09145 PF12849 PBP superfamily domain VFU_RS09150 PF00158 Sigma-54 interaction domain VFU_RS09150 PF00072 Response regulator receiver domain VFU_RS09150 PF02954 Bacterial regulatory protein, Fis family VFU_RS09155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS09155 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS09155 PF00989 PAS fold VFU_RS09170 PF02634 FdhD/NarQ family VFU_RS09190 PF02613 Nitrate reductase delta subunit VFU_RS09200 PF00384 Molybdopterin oxidoreductase VFU_RS09200 PF01568 Molydopterin dinucleotide binding domain VFU_RS09200 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VFU_RS09205 PF13247 4Fe-4S dicluster domain VFU_RS09220 PF00909 Ammonium Transporter Family VFU_RS09225 PF02146 Sir2 family VFU_RS09230 PF13416 Bacterial extracellular solute-binding protein VFU_RS09235 PF13416 Bacterial extracellular solute-binding protein VFU_RS09240 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS09245 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS09250 PF00005 ABC transporter VFU_RS09250 PF08402 TOBE domain VFU_RS09270 PF01171 PP-loop family VFU_RS09275 PF00582 Universal stress protein family VFU_RS09280 PF13545 Crp-like helix-turn-helix domain VFU_RS09280 PF00027 Cyclic nucleotide-binding domain VFU_RS09295 PF00403 Heavy-metal-associated domain VFU_RS09305 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VFU_RS09305 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VFU_RS09320 PF00115 Cytochrome C and Quinol oxidase polypeptide I VFU_RS09335 PF00072 Response regulator receiver domain VFU_RS09335 PF09308 LuxQ, periplasmic VFU_RS09335 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS09335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS09340 PF01566 Natural resistance-associated macrophage protein VFU_RS09395 PF17414 MatP C-terminal ribbon-helix-helix domain VFU_RS09395 PF06303 MatP N-terminal domain VFU_RS09400 PF13654 AAA domain VFU_RS09400 PF05362 Lon protease (S16) C-terminal proteolytic domain VFU_RS09405 PF07977 FabA-like domain VFU_RS09410 PF04957 Ribosome modulation factor VFU_RS09420 PF12848 ABC transporter VFU_RS09420 PF00005 ABC transporter VFU_RS09420 PF16326 ABC transporter C-terminal domain VFU_RS09430 PF10672 S-adenosylmethionine-dependent methyltransferase VFU_RS09430 PF02926 THUMP domain VFU_RS09430 PF01170 Putative RNA methylase family UPF0020 VFU_RS09435 PF07126 Cell-division protein ZapC VFU_RS09440 PF01180 Dihydroorotate dehydrogenase VFU_RS09445 PF05088 Bacterial NAD-glutamate dehydrogenase VFU_RS09465 PF11818 C-terminal domain of tail specific protease (DUF3340) VFU_RS09465 PF03572 Peptidase family S41 VFU_RS09465 PF17804 Tail specific protease N-terminal domain VFU_RS09465 PF00595 PDZ domain VFU_RS09470 PF04352 ProQ/FINO family VFU_RS09470 PF17516 ProQ C-terminal domain VFU_RS09475 PF13185 GAF domain VFU_RS09480 PF00005 ABC transporter VFU_RS09480 PF00664 ABC transporter transmembrane region VFU_RS09485 PF04403 Paraquat-inducible protein A VFU_RS09490 PF02470 MlaD protein VFU_RS09495 PF01189 16S rRNA methyltransferase RsmB/F VFU_RS09495 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VFU_RS09495 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VFU_RS09500 PF13509 S1 domain VFU_RS09500 PF17783 CvfB-like winged helix domain VFU_RS09515 PF00391 PEP-utilising enzyme, mobile domain VFU_RS09515 PF02896 PEP-utilising enzyme, TIM barrel domain VFU_RS09515 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VFU_RS09520 PF00793 DAHP synthetase I family VFU_RS09525 PF04461 Protein of unknown function (DUF520) VFU_RS09530 PF01641 SelR domain VFU_RS09545 PF01235 Sodium:alanine symporter family VFU_RS09570 PF04717 Type VI secretion system, phage-baseplate injector VFU_RS09570 PF16671 Actin cross-linking domain VFU_RS09575 PF05638 Type VI secretion system effector, Hcp VFU_RS09580 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VFU_RS09595 PF01614 Bacterial transcriptional regulator VFU_RS09595 PF09339 IclR helix-turn-helix domain VFU_RS09600 PF03466 LysR substrate binding domain VFU_RS09600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS09605 PF00848 Ring hydroxylating alpha subunit (catalytic domain) VFU_RS09605 PF00355 Rieske [2Fe-2S] domain VFU_RS09610 PF00866 Ring hydroxylating beta subunit VFU_RS09615 PF00355 Rieske [2Fe-2S] domain VFU_RS09620 PF00106 short chain dehydrogenase VFU_RS09625 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS09625 PF14759 Reductase C-terminal VFU_RS09630 PF00083 Sugar (and other) transporter VFU_RS09635 PF07836 DmpG-like communication domain VFU_RS09635 PF00682 HMGL-like VFU_RS09640 PF01118 Semialdehyde dehydrogenase, NAD binding domain VFU_RS09640 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation VFU_RS09645 PF01557 Fumarylacetoacetate (FAA) hydrolase family VFU_RS09655 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase VFU_RS09660 PF01494 FAD binding domain VFU_RS09670 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VFU_RS09670 PF00271 Helicase conserved C-terminal domain VFU_RS09670 PF04408 Helicase associated domain (HA2) VFU_RS09670 PF11898 Domain of unknown function (DUF3418) VFU_RS09670 PF00270 DEAD/DEAH box helicase VFU_RS09675 PF02525 Flavodoxin-like fold VFU_RS09705 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS09720 PF00012 Hsp70 protein VFU_RS09725 PF00012 Hsp70 protein VFU_RS09730 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS09740 PF03707 Bacterial signalling protein N terminal repeat VFU_RS09740 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS09740 PF00563 EAL domain VFU_RS09755 PF04399 Glutaredoxin 2, C terminal domain VFU_RS09755 PF13417 Glutathione S-transferase, N-terminal domain VFU_RS09760 PF07859 alpha/beta hydrolase fold VFU_RS09770 PF00384 Molybdopterin oxidoreductase VFU_RS09770 PF18364 Molybdopterin oxidoreductase N-terminal domain VFU_RS09770 PF01568 Molydopterin dinucleotide binding domain VFU_RS09775 PF03264 NapC/NirT cytochrome c family, N-terminal region VFU_RS09780 PF06508 Queuosine biosynthesis protein QueC VFU_RS09785 PF04055 Radical SAM superfamily VFU_RS09795 PF14824 Sirohaem biosynthesis protein central VFU_RS09795 PF10414 Sirohaem synthase dimerisation region VFU_RS09795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VFU_RS09800 PF00497 Bacterial extracellular solute-binding proteins, family 3 VFU_RS09805 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS09810 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS09815 PF00005 ABC transporter VFU_RS09820 PF01027 Inhibitor of apoptosis-promoting Bax1 VFU_RS09825 PF04358 DsrC like protein VFU_RS09830 PF00708 Acylphosphatase VFU_RS09835 PF10672 S-adenosylmethionine-dependent methyltransferase VFU_RS09835 PF17785 PUA-like domain VFU_RS09840 PF06433 Methylamine dehydrogenase heavy chain (MADH) VFU_RS09850 PF00578 AhpC/TSA family VFU_RS09855 PF02975 Methylamine dehydrogenase, L chain VFU_RS09870 PF00141 Peroxidase VFU_RS09880 PF00672 HAMP domain VFU_RS09880 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS09880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS09885 PF00072 Response regulator receiver domain VFU_RS09885 PF00486 Transcriptional regulatory protein, C terminal VFU_RS09890 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VFU_RS09890 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VFU_RS09905 PF05552 Conserved TM helix VFU_RS09905 PF00924 Mechanosensitive ion channel VFU_RS09910 PF01699 Sodium/calcium exchanger protein VFU_RS09915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS09915 PF08447 PAS fold VFU_RS09915 PF13426 PAS domain VFU_RS09935 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS09935 PF00072 Response regulator receiver domain VFU_RS09945 PF00586 AIR synthase related protein, N-terminal domain VFU_RS09945 PF02769 AIR synthase related protein, C-terminal domain VFU_RS09950 PF00581 Rhodanese-like domain VFU_RS09955 PF02635 DsrE/DsrF-like family VFU_RS09960 PF02492 CobW/HypB/UreG, nucleotide-binding domain VFU_RS09965 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA VFU_RS09970 PF02769 AIR synthase related protein, C-terminal domain VFU_RS09970 PF00586 AIR synthase related protein, N-terminal domain VFU_RS09975 PF01924 Hydrogenase formation hypA family VFU_RS09980 PF01455 HupF/HypC family VFU_RS09985 PF00708 Acylphosphatase VFU_RS09985 PF17788 HypF Kae1-like domain VFU_RS09985 PF01300 Telomere recombination VFU_RS09985 PF07503 HypF finger VFU_RS09990 PF04955 HupE / UreJ protein VFU_RS09995 PF02634 FdhD/NarQ family VFU_RS10000 PF01590 GAF domain VFU_RS10000 PF00158 Sigma-54 interaction domain VFU_RS10005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VFU_RS10005 PF00384 Molybdopterin oxidoreductase VFU_RS10005 PF01568 Molydopterin dinucleotide binding domain VFU_RS10010 PF01568 Molydopterin dinucleotide binding domain VFU_RS10010 PF00384 Molybdopterin oxidoreductase VFU_RS10010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VFU_RS10015 PF12800 4Fe-4S binding domain VFU_RS10015 PF13247 4Fe-4S dicluster domain VFU_RS10020 PF01750 Hydrogenase maturation protease VFU_RS10025 PF07450 Formate hydrogenlyase maturation protein HycH VFU_RS10030 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit VFU_RS10035 PF12838 4Fe-4S dicluster domain VFU_RS10040 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit VFU_RS10040 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit VFU_RS10040 PF00374 Nickel-dependent hydrogenase VFU_RS10045 PF00146 NADH dehydrogenase VFU_RS10050 PF00361 Proton-conducting membrane transporter VFU_RS10055 PF00037 4Fe-4S binding domain VFU_RS10055 PF12798 4Fe-4S binding domain VFU_RS10060 PF09106 Elongation factor SelB, winged helix VFU_RS10060 PF09105 Elongation factor SelB, winged helix VFU_RS10060 PF00009 Elongation factor Tu GTP binding domain VFU_RS10060 PF09107 Elongation factor SelB, winged helix VFU_RS10060 PF03144 Elongation factor Tu domain 2 VFU_RS10065 PF12390 Selenocysteine synthase N terminal VFU_RS10065 PF03841 L-seryl-tRNA selenium transferase VFU_RS10070 PF01584 CheW-like domain VFU_RS10070 PF00072 Response regulator receiver domain VFU_RS10080 PF00072 Response regulator receiver domain VFU_RS10080 PF12431 Transcriptional regulator VFU_RS10085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS10085 PF00989 PAS fold VFU_RS10085 PF17203 Single cache domain 3 VFU_RS10085 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VFU_RS10100 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VFU_RS10120 PF04204 Homoserine O-succinyltransferase VFU_RS10135 PF05971 RNA methyltransferase VFU_RS10140 PF01863 Protein of unknown function DUF45 VFU_RS10150 PF03466 LysR substrate binding domain VFU_RS10150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS10175 PF00132 Bacterial transferase hexapeptide (six repeats) VFU_RS10175 PF12464 Maltose acetyltransferase VFU_RS10180 PF17200 Single Cache domain 2 VFU_RS10180 PF00672 HAMP domain VFU_RS10180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS10185 PF02264 LamB porin VFU_RS10190 PF08532 Beta-galactosidase trimerisation domain VFU_RS10190 PF08533 Beta-galactosidase C-terminal domain VFU_RS10190 PF02449 Beta-galactosidase VFU_RS10195 PF07745 Glycosyl hydrolase family 53 VFU_RS10200 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS10205 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS10210 PF13416 Bacterial extracellular solute-binding protein VFU_RS10215 PF17912 MalK OB fold domain VFU_RS10215 PF00005 ABC transporter VFU_RS10220 PF00356 Bacterial regulatory proteins, lacI family VFU_RS10265 PF00005 ABC transporter VFU_RS10270 PF01032 FecCD transport family VFU_RS10275 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VFU_RS10285 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VFU_RS10290 PF02654 Cobalamin-5-phosphate synthase VFU_RS10295 PF02277 Phosphoribosyltransferase VFU_RS10300 PF01613 Flavin reductase like domain VFU_RS10310 PF00375 Sodium:dicarboxylate symporter family VFU_RS10350 PF00929 Exonuclease VFU_RS10350 PF08411 Exonuclease C-terminal VFU_RS10355 PF03788 LrgA family VFU_RS10360 PF04172 LrgB-like family VFU_RS10365 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VFU_RS10365 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VFU_RS10370 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS10370 PF08448 PAS fold VFU_RS10370 PF08447 PAS fold VFU_RS10370 PF00563 EAL domain VFU_RS10390 PF02222 ATP-grasp domain VFU_RS10395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS10395 PF08447 PAS fold VFU_RS10395 PF13426 PAS domain VFU_RS10400 PF05724 Thiopurine S-methyltransferase (TPMT) VFU_RS10405 PF05488 PAAR motif VFU_RS10410 PF00216 Bacterial DNA-binding protein VFU_RS10415 PF01588 Putative tRNA binding domain VFU_RS10415 PF03483 B3/4 domain VFU_RS10415 PF03484 tRNA synthetase B5 domain VFU_RS10415 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VFU_RS10415 PF03147 Ferredoxin-fold anticodon binding domain VFU_RS10420 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VFU_RS10420 PF01409 tRNA synthetases class II core domain (F) VFU_RS10430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS10430 PF03466 LysR substrate binding domain VFU_RS10435 PF00072 Response regulator receiver domain VFU_RS10435 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS10440 PF07995 Glucose / Sorbosone dehydrogenase VFU_RS10470 PF01066 CDP-alcohol phosphatidyltransferase VFU_RS10475 PF01541 GIY-YIG catalytic domain VFU_RS10475 PF02151 UvrB/uvrC motif VFU_RS10475 PF08459 UvrC Helix-hairpin-helix N-terminal VFU_RS10480 PF00072 Response regulator receiver domain VFU_RS10480 PF00196 Bacterial regulatory proteins, luxR family VFU_RS10485 PF00136 DNA polymerase family B VFU_RS10485 PF03104 DNA polymerase family B, exonuclease domain VFU_RS10495 PF08207 Elongation factor P (EF-P) KOW-like domain VFU_RS10495 PF01132 Elongation factor P (EF-P) OB domain VFU_RS10495 PF09285 Elongation factor P, C-terminal VFU_RS10500 PF04269 Protein of unknown function, DUF440 VFU_RS10505 PF04266 ASCH domain VFU_RS10510 PF00392 Bacterial regulatory proteins, gntR family VFU_RS10510 PF07702 UTRA domain VFU_RS10515 PF01979 Amidohydrolase family VFU_RS10520 PF00491 Arginase family VFU_RS10525 PF17391 Urocanase N-terminal domain VFU_RS10525 PF01175 Urocanase Rossmann-like domain VFU_RS10525 PF17392 Urocanase C-terminal domain VFU_RS10530 PF00221 Aromatic amino acid lyase VFU_RS10540 PF04191 Phospholipid methyltransferase VFU_RS10545 PF01565 FAD binding domain VFU_RS10545 PF02913 FAD linked oxidases, C-terminal domain VFU_RS10545 PF13183 4Fe-4S dicluster domain VFU_RS10560 PF13488 Glycine zipper VFU_RS10560 PF00691 OmpA family VFU_RS10580 PF01259 SAICAR synthetase VFU_RS10585 PF00202 Aminotransferase class-III VFU_RS10590 PF00171 Aldehyde dehydrogenase family VFU_RS10595 PF04371 Porphyromonas-type peptidyl-arginine deiminase VFU_RS10600 PF00795 Carbon-nitrogen hydrolase VFU_RS10605 PF01266 FAD dependent oxidoreductase VFU_RS10610 PF00171 Aldehyde dehydrogenase family VFU_RS10615 PF01381 Helix-turn-helix VFU_RS10615 PF07883 Cupin domain VFU_RS10620 PF07722 Peptidase C26 VFU_RS10625 PF00120 Glutamine synthetase, catalytic domain VFU_RS10630 PF03553 Na+/H+ antiporter family VFU_RS10635 PF13533 Biotin-lipoyl like VFU_RS10640 PF07690 Major Facilitator Superfamily VFU_RS10645 PF03466 LysR substrate binding domain VFU_RS10645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS10660 PF00271 Helicase conserved C-terminal domain VFU_RS10660 PF04408 Helicase associated domain (HA2) VFU_RS10660 PF00270 DEAD/DEAH box helicase VFU_RS10660 PF08482 ATP-dependent helicase C-terminal VFU_RS10665 PF00390 Malic enzyme, N-terminal domain VFU_RS10665 PF03949 Malic enzyme, NAD binding domain VFU_RS10675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS10675 PF03466 LysR substrate binding domain VFU_RS10700 PF09278 MerR, DNA binding VFU_RS10700 PF00376 MerR family regulatory protein VFU_RS10710 PF02698 DUF218 domain VFU_RS10720 PF00266 Aminotransferase class-V VFU_RS10740 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS10745 PF00005 ABC transporter VFU_RS10745 PF00664 ABC transporter transmembrane region VFU_RS10750 PF00664 ABC transporter transmembrane region VFU_RS10750 PF00005 ABC transporter VFU_RS10765 PF01479 S4 domain VFU_RS10765 PF00849 RNA pseudouridylate synthase VFU_RS10770 PF01300 Telomere recombination VFU_RS10775 PF02838 Glycosyl hydrolase family 20, domain 2 VFU_RS10775 PF00728 Glycosyl hydrolase family 20, catalytic domain VFU_RS10780 PF01081 KDPG and KHG aldolase VFU_RS10785 PF00294 pfkB family carbohydrate kinase VFU_RS10790 PF00474 Sodium:solute symporter family VFU_RS10800 PF07969 Amidohydrolase family VFU_RS10810 PF02685 Glucokinase VFU_RS10810 PF01418 Helix-turn-helix domain, rpiR family VFU_RS10810 PF01380 SIS domain VFU_RS10815 PF02811 PHP domain VFU_RS10820 PF00425 chorismate binding enzyme VFU_RS10820 PF04715 Anthranilate synthase component I, N terminal region VFU_RS10825 PF00117 Glutamine amidotransferase class-I VFU_RS10830 PF00591 Glycosyl transferase family, a/b domain VFU_RS10830 PF02885 Glycosyl transferase family, helical bundle domain VFU_RS10835 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VFU_RS10835 PF00218 Indole-3-glycerol phosphate synthase VFU_RS10840 PF00291 Pyridoxal-phosphate dependent enzyme VFU_RS10845 PF00290 Tryptophan synthase alpha chain VFU_RS10850 PF00375 Sodium:dicarboxylate symporter family VFU_RS10855 PF04279 Intracellular septation protein A VFU_RS10860 PF03061 Thioesterase superfamily VFU_RS10865 PF03795 YCII-related domain VFU_RS10875 PF00672 HAMP domain VFU_RS10875 PF02743 Cache domain VFU_RS10875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS10880 PF08267 Cobalamin-independent synthase, N-terminal domain VFU_RS10880 PF01717 Cobalamin-independent synthase, Catalytic domain VFU_RS10890 PF13677 Membrane MotB of proton-channel complex MotA/MotB VFU_RS10890 PF00691 OmpA family VFU_RS10895 PF01618 MotA/TolQ/ExbB proton channel family VFU_RS10900 PF04539 Sigma-70 region 3 VFU_RS10900 PF04542 Sigma-70 region 2 VFU_RS10900 PF04545 Sigma-70, region 4 VFU_RS10925 PF07196 Flagellin hook IN motif VFU_RS10925 PF07195 Flagellar hook-associated protein 2 C-terminus VFU_RS10925 PF02465 Flagellar hook-associated protein 2 N-terminus VFU_RS10930 PF00700 Bacterial flagellin C-terminal helical region VFU_RS10930 PF00669 Bacterial flagellin N-terminal helical region VFU_RS10935 PF00700 Bacterial flagellin C-terminal helical region VFU_RS10935 PF00669 Bacterial flagellin N-terminal helical region VFU_RS10940 PF00700 Bacterial flagellin C-terminal helical region VFU_RS10940 PF00669 Bacterial flagellin N-terminal helical region VFU_RS10945 PF00771 FHIPEP family VFU_RS10970 PF01706 FliG C-terminal domain VFU_RS10970 PF14841 FliG middle domain VFU_RS10970 PF14842 FliG N-terminal domain VFU_RS10975 PF01514 Secretory protein of YscJ/FliF family VFU_RS10975 PF08345 Flagellar M-ring protein C-terminal VFU_RS10980 PF02049 Flagellar hook-basal body complex protein FliE VFU_RS11005 PF02119 Flagellar P-ring protein VFU_RS11010 PF02107 Flagellar L-ring protein VFU_RS11015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS11015 PF00460 Flagella basal body rod protein VFU_RS11020 PF00460 Flagella basal body rod protein VFU_RS11020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS11025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS11025 PF07559 Flagellar basal body protein FlaE VFU_RS11025 PF00460 Flagella basal body rod protein VFU_RS11035 PF00460 Flagella basal body rod protein VFU_RS11035 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VFU_RS11040 PF00460 Flagella basal body rod protein VFU_RS11050 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VFU_RS11055 PF00813 FliP family VFU_RS11060 PF01313 Bacterial export proteins, family 3 VFU_RS11065 PF01311 Bacterial export proteins, family 1 VFU_RS11070 PF01312 FlhB HrpN YscU SpaS Family VFU_RS11080 PF06406 StbA protein VFU_RS11085 PF03466 LysR substrate binding domain VFU_RS11085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS11100 PF00675 Insulinase (Peptidase family M16) VFU_RS11100 PF05193 Peptidase M16 inactive domain VFU_RS11115 PF00563 EAL domain VFU_RS11115 PF00196 Bacterial regulatory proteins, luxR family VFU_RS11120 PF00672 HAMP domain VFU_RS11120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS11120 PF12729 Four helix bundle sensory module for signal transduction VFU_RS11130 PF03466 LysR substrate binding domain VFU_RS11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS11140 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VFU_RS11145 PF03358 NADPH-dependent FMN reductase VFU_RS11150 PF00005 ABC transporter VFU_RS11150 PF12848 ABC transporter VFU_RS11155 PF08497 Radical SAM N-terminal VFU_RS11155 PF11842 Domain of unknown function (DUF3362) VFU_RS11155 PF04055 Radical SAM superfamily VFU_RS11165 PF04616 Glycosyl hydrolases family 43 VFU_RS11165 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain VFU_RS11170 PF00132 Bacterial transferase hexapeptide (six repeats) VFU_RS11170 PF14602 Hexapeptide repeat of succinyl-transferase VFU_RS11170 PF12464 Maltose acetyltransferase VFU_RS11175 PF00266 Aminotransferase class-V VFU_RS11185 PF00497 Bacterial extracellular solute-binding proteins, family 3 VFU_RS11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS11185 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS11200 PF04993 TfoX N-terminal domain VFU_RS11200 PF04994 TfoX C-terminal domain VFU_RS11220 PF00282 Pyridoxal-dependent decarboxylase conserved domain VFU_RS11225 PF01380 SIS domain VFU_RS11225 PF01418 Helix-turn-helix domain, rpiR family VFU_RS11230 PF00465 Iron-containing alcohol dehydrogenase VFU_RS11235 PF00462 Glutaredoxin VFU_RS11240 PF02080 TrkA-C domain VFU_RS11240 PF06826 Predicted Permease Membrane Region VFU_RS11245 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VFU_RS11245 PF12241 Trans-2-enoyl-CoA reductase catalytic region VFU_RS11245 PF07055 Enoyl reductase FAD binding domain VFU_RS11250 PF09317 Domain of unknown function (DUF1974) VFU_RS11250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VFU_RS11250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VFU_RS11250 PF02770 Acyl-CoA dehydrogenase, middle domain VFU_RS11255 PF16295 Tetracyclin repressor-like, C-terminal domain VFU_RS11255 PF00440 Bacterial regulatory proteins, tetR family VFU_RS11270 PF00171 Aldehyde dehydrogenase family VFU_RS11280 PF07670 Nucleoside recognition VFU_RS11285 PF07670 Nucleoside recognition VFU_RS11295 PF01116 Fructose-bisphosphate aldolase class-II VFU_RS11300 PF01979 Amidohydrolase family VFU_RS11305 PF03610 PTS system fructose IIA component VFU_RS11310 PF03613 PTS system mannose/fructose/sorbose family IID component VFU_RS11315 PF03609 PTS system sorbose-specific iic component VFU_RS11320 PF03830 PTS system sorbose subfamily IIB component VFU_RS11325 PF01380 SIS domain VFU_RS11330 PF08013 Tagatose 6 phosphate kinase VFU_RS11335 PF08220 DeoR-like helix-turn-helix domain VFU_RS11335 PF00455 DeoR C terminal sensor domain VFU_RS11340 PF00455 DeoR C terminal sensor domain VFU_RS11340 PF08220 DeoR-like helix-turn-helix domain VFU_RS11350 PF06610 L-alanine exporter VFU_RS11355 PF00072 Response regulator receiver domain VFU_RS11355 PF09308 LuxQ, periplasmic VFU_RS11355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS11355 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS11365 PF02445 Quinolinate synthetase A protein VFU_RS11370 PF13174 Tetratricopeptide repeat VFU_RS11370 PF16331 TolA binding protein trimerisation VFU_RS11375 PF00691 OmpA family VFU_RS11380 PF04052 TolB amino-terminal domain VFU_RS11380 PF07676 WD40-like Beta Propeller Repeat VFU_RS11390 PF02472 Biopolymer transport protein ExbD/TolR VFU_RS11395 PF01618 MotA/TolQ/ExbB proton channel family VFU_RS11400 PF03061 Thioesterase superfamily VFU_RS11415 PF02322 Cytochrome bd terminal oxidase subunit II VFU_RS11420 PF01654 Cytochrome bd terminal oxidase subunit I VFU_RS11425 PF05496 Holliday junction DNA helicase RuvB P-loop domain VFU_RS11425 PF17864 RuvB AAA lid domain VFU_RS11425 PF05491 RuvB C-terminal winged helix domain VFU_RS11430 PF01330 RuvA N terminal domain VFU_RS11430 PF07499 RuvA, C-terminal domain VFU_RS11435 PF02075 Crossover junction endodeoxyribonuclease RuvC VFU_RS11440 PF09190 DALR domain VFU_RS11440 PF01406 tRNA synthetases class I (C) catalytic domain VFU_RS11445 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VFU_RS11450 PF00149 Calcineurin-like phosphoesterase VFU_RS11455 PF08668 HDOD domain VFU_RS11455 PF00563 EAL domain VFU_RS11460 PF02810 SEC-C motif VFU_RS11465 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VFU_RS11475 PF13307 Helicase C-terminal domain VFU_RS11475 PF06733 DEAD_2 VFU_RS11480 PF07445 Primosomal replication protein priC VFU_RS11485 PF10689 Protein of unknown function (DUF2496) VFU_RS11490 PF00672 HAMP domain VFU_RS11490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS11495 PF03372 Endonuclease/Exonuclease/phosphatase family VFU_RS11500 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS11505 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS11510 PF00497 Bacterial extracellular solute-binding proteins, family 3 VFU_RS11515 PF00005 ABC transporter VFU_RS11535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS11535 PF00672 HAMP domain VFU_RS11540 PF04055 Radical SAM superfamily VFU_RS11550 PF03887 YfbU domain VFU_RS11555 PF06629 MltA-interacting protein MipA VFU_RS11560 PF08298 PrkA AAA domain VFU_RS11560 PF06798 PrkA serine protein kinase C-terminal domain VFU_RS11565 PF04285 Protein of unknown function (DUF444) VFU_RS11570 PF04293 SpoVR like protein VFU_RS11575 PF02348 Cytidylyltransferase VFU_RS11580 PF03966 Trm112p-like protein VFU_RS11585 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VFU_RS11590 PF00005 ABC transporter VFU_RS11590 PF00664 ABC transporter transmembrane region VFU_RS11595 PF03772 Competence protein VFU_RS11595 PF00753 Metallo-beta-lactamase superfamily VFU_RS11595 PF13567 Domain of unknown function (DUF4131) VFU_RS11605 PF02687 FtsX-like permease family VFU_RS11605 PF12704 MacB-like periplasmic core domain VFU_RS11610 PF00005 ABC transporter VFU_RS11615 PF02687 FtsX-like permease family VFU_RS11615 PF12704 MacB-like periplasmic core domain VFU_RS11635 PF13302 Acetyltransferase (GNAT) domain VFU_RS11640 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS11645 PF05728 Uncharacterised protein family (UPF0227) VFU_RS11655 PF13036 Peptidoglycan-synthase activator LpoB VFU_RS11655 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VFU_RS11670 PF01230 HIT domain VFU_RS11675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS11675 PF00672 HAMP domain VFU_RS11685 PF07840 FadR C-terminal domain VFU_RS11685 PF00392 Bacterial regulatory proteins, gntR family VFU_RS11690 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VFU_RS11695 PF02600 Disulfide bond formation protein DsbB VFU_RS11700 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VFU_RS11700 PF17854 FtsK alpha domain VFU_RS11700 PF09397 Ftsk gamma domain VFU_RS11700 PF01580 FtsK/SpoIIIE family VFU_RS11705 PF01037 Lrp/AsnC ligand binding domain VFU_RS11710 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VFU_RS11710 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VFU_RS11720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS11720 PF03466 LysR substrate binding domain VFU_RS11730 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VFU_RS11735 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VFU_RS11740 PF18073 Rubredoxin metal binding domain VFU_RS11745 PF06305 Lipopolysaccharide assembly protein A domain VFU_RS11750 PF00216 Bacterial DNA-binding protein VFU_RS11755 PF00575 S1 RNA binding domain VFU_RS11760 PF02224 Cytidylate kinase VFU_RS11770 PF13145 PPIC-type PPIASE domain VFU_RS11775 PF00216 Bacterial DNA-binding protein VFU_RS11780 PF02190 ATP-dependent protease La (LON) substrate-binding domain VFU_RS11780 PF00004 ATPase family associated with various cellular activities (AAA) VFU_RS11780 PF05362 Lon protease (S16) C-terminal proteolytic domain VFU_RS11785 PF06689 ClpX C4-type zinc finger VFU_RS11785 PF10431 C-terminal, D2-small domain, of ClpB protein VFU_RS11785 PF07724 AAA domain (Cdc48 subfamily) VFU_RS11790 PF00574 Clp protease VFU_RS11795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VFU_RS11795 PF05698 Bacterial trigger factor protein (TF) C-terminus VFU_RS11795 PF05697 Bacterial trigger factor protein (TF) VFU_RS11800 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS11800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS11805 PF00072 Response regulator receiver domain VFU_RS11805 PF00158 Sigma-54 interaction domain VFU_RS11805 PF02954 Bacterial regulatory protein, Fis family VFU_RS11810 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VFU_RS11815 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VFU_RS11820 PF03480 Bacterial extracellular solute-binding protein, family 7 VFU_RS11825 PF04151 Bacterial pre-peptidase C-terminal domain VFU_RS11825 PF00082 Subtilase family VFU_RS11825 PF05922 Peptidase inhibitor I9 VFU_RS11830 PF01547 Bacterial extracellular solute-binding protein VFU_RS11835 PF00672 HAMP domain VFU_RS11835 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS11835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS11840 PF00486 Transcriptional regulatory protein, C terminal VFU_RS11840 PF00072 Response regulator receiver domain VFU_RS11850 PF03313 Serine dehydratase alpha chain VFU_RS11850 PF03315 Serine dehydratase beta chain VFU_RS11860 PF00583 Acetyltransferase (GNAT) family VFU_RS11860 PF00795 Carbon-nitrogen hydrolase VFU_RS11870 PF00563 EAL domain VFU_RS11870 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS11870 PF03707 Bacterial signalling protein N terminal repeat VFU_RS11890 PF00970 Oxidoreductase FAD-binding domain VFU_RS11890 PF00175 Oxidoreductase NAD-binding domain VFU_RS11915 PF00072 Response regulator receiver domain VFU_RS11915 PF00196 Bacterial regulatory proteins, luxR family VFU_RS11920 PF05231 MASE1 VFU_RS11920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS11920 PF07730 Histidine kinase VFU_RS11925 PF07690 Major Facilitator Superfamily VFU_RS11935 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS11940 PF00005 ABC transporter VFU_RS11940 PF08402 TOBE domain VFU_RS11950 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VFU_RS11950 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VFU_RS11955 PF07670 Nucleoside recognition VFU_RS11955 PF07662 Na+ dependent nucleoside transporter C-terminus VFU_RS11955 PF01773 Na+ dependent nucleoside transporter N-terminus VFU_RS11960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS11960 PF03466 LysR substrate binding domain VFU_RS11965 PF13406 Transglycosylase SLT domain VFU_RS11970 PF05166 YcgL domain VFU_RS11975 PF03775 Septum formation inhibitor MinC, C-terminal domain VFU_RS11975 PF05209 Septum formation inhibitor MinC, N-terminal domain VFU_RS11980 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VFU_RS11985 PF03776 Septum formation topological specificity factor MinE VFU_RS11995 PF01612 3'-5' exonuclease VFU_RS11995 PF00570 HRDC domain VFU_RS12000 PF13193 AMP-binding enzyme C-terminal domain VFU_RS12000 PF00501 AMP-binding enzyme VFU_RS12005 PF00561 alpha/beta hydrolase fold VFU_RS12020 PF00814 Glycoprotease family VFU_RS12025 PF13307 Helicase C-terminal domain VFU_RS12025 PF04851 Type III restriction enzyme, res subunit VFU_RS12035 PF00551 Formyl transferase VFU_RS12035 PF01842 ACT domain VFU_RS12040 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS12040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VFU_RS12045 PF01343 Peptidase family S49 VFU_RS12050 PF00710 Asparaginase, N-terminal VFU_RS12050 PF17763 Glutaminase/Asparaginase C-terminal domain VFU_RS12055 PF07023 Protein of unknown function (DUF1315) VFU_RS12065 PF01641 SelR domain VFU_RS12070 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VFU_RS12070 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VFU_RS12075 PF01263 Aldose 1-epimerase VFU_RS12080 PF13847 Methyltransferase domain VFU_RS12095 PF07516 SecA Wing and Scaffold domain VFU_RS12095 PF01043 SecA preprotein cross-linking domain VFU_RS12095 PF07517 SecA DEAD-like domain VFU_RS12095 PF02810 SEC-C motif VFU_RS12255 PF05840 Bacteriophage replication gene A protein (GPA) VFU_RS12280 PF06892 Phage regulatory protein CII (CP76) VFU_RS12320 PF00589 Phage integrase family VFU_RS12320 PF02899 Phage integrase, N-terminal SAM-like domain VFU_RS12325 PF03692 Putative zinc- or iron-chelating domain VFU_RS12330 PF03692 Putative zinc- or iron-chelating domain VFU_RS12335 PF00230 Major intrinsic protein VFU_RS12340 PF02132 RecR protein VFU_RS12340 PF13662 Toprim domain VFU_RS12345 PF02575 YbaB/EbfC DNA-binding family VFU_RS12350 PF12169 DNA polymerase III subunits gamma and tau domain III VFU_RS12350 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VFU_RS12350 PF12170 DNA polymerase III tau subunit V interacting with alpha VFU_RS12355 PF00156 Phosphoribosyl transferase domain VFU_RS12360 PF04304 Protein of unknown function (DUF454) VFU_RS12370 PF00072 Response regulator receiver domain VFU_RS12375 PF03466 LysR substrate binding domain VFU_RS12375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS12380 PF00881 Nitroreductase family VFU_RS12385 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VFU_RS12385 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VFU_RS12385 PF00378 Enoyl-CoA hydratase/isomerase VFU_RS12390 PF00108 Thiolase, N-terminal domain VFU_RS12390 PF02803 Thiolase, C-terminal domain VFU_RS12395 PF04542 Sigma-70 region 2 VFU_RS12395 PF08281 Sigma-70, region 4 VFU_RS12405 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VFU_RS12410 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VFU_RS12415 PF01451 Low molecular weight phosphotyrosine protein phosphatase VFU_RS12425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS12425 PF13426 PAS domain VFU_RS12425 PF08447 PAS fold VFU_RS12430 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VFU_RS12430 PF12557 Cob(I)alamin adenosyltransferase N terminal VFU_RS12435 PF05170 AsmA family VFU_RS12440 PF00485 Phosphoribulokinase / Uridine kinase family VFU_RS12445 PF10609 NUBPL iron-transfer P-loop NTPase VFU_RS12460 PF01048 Phosphorylase superfamily VFU_RS12465 PF00403 Heavy-metal-associated domain VFU_RS12470 PF00571 CBS domain VFU_RS12470 PF01368 DHH family VFU_RS12470 PF02272 DHHA1 domain VFU_RS12470 PF01743 Poly A polymerase head domain VFU_RS12475 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS12475 PF08448 PAS fold VFU_RS12480 PF02391 MoaE protein VFU_RS12485 PF02597 ThiS family VFU_RS12490 PF01967 MoaC family VFU_RS12495 PF00994 Probable molybdopterin binding domain VFU_RS12500 PF04055 Radical SAM superfamily VFU_RS12500 PF06463 Molybdenum Cofactor Synthesis C VFU_RS12505 PF01933 Uncharacterised protein family UPF0052 VFU_RS12510 PF01627 Hpt domain VFU_RS12515 PF00158 Sigma-54 interaction domain VFU_RS12515 PF00072 Response regulator receiver domain VFU_RS12515 PF02954 Bacterial regulatory protein, Fis family VFU_RS12520 PF04851 Type III restriction enzyme, res subunit VFU_RS12520 PF02151 UvrB/uvrC motif VFU_RS12520 PF00271 Helicase conserved C-terminal domain VFU_RS12520 PF12344 Ultra-violet resistance protein B VFU_RS12520 PF17757 UvrB interaction domain VFU_RS12530 PF01228 Glycine radical VFU_RS12530 PF02901 Pyruvate formate lyase-like VFU_RS12535 PF02508 Rnf-Nqr subunit, membrane protein VFU_RS12540 PF04060 Putative Fe-S cluster VFU_RS12545 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VFU_RS12545 PF12838 4Fe-4S dicluster domain VFU_RS12545 PF13375 RnfC Barrel sandwich hybrid domain VFU_RS12545 PF10531 SLBB domain VFU_RS12550 PF03116 NQR2, RnfD, RnfE family VFU_RS12555 PF04205 FMN-binding domain VFU_RS12560 PF02508 Rnf-Nqr subunit, membrane protein VFU_RS12565 PF10576 Iron-sulfur binding domain of endonuclease III VFU_RS12565 PF00633 Helix-hairpin-helix motif VFU_RS12565 PF00730 HhH-GPD superfamily base excision DNA repair protein VFU_RS12570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VFU_RS12575 PF10952 Protein of unknown function (DUF2753) VFU_RS12580 PF18393 MotY N-terminal domain VFU_RS12580 PF00691 OmpA family VFU_RS12585 PF00929 Exonuclease VFU_RS12590 PF13726 Na+-H+ antiporter family VFU_RS12590 PF03553 Na+/H+ antiporter family VFU_RS12595 PF00156 Phosphoribosyl transferase domain VFU_RS12600 PF02674 Colicin V production protein VFU_RS12605 PF05036 Sporulation related domain VFU_RS12610 PF08245 Mur ligase middle domain VFU_RS12610 PF02875 Mur ligase family, glutamate ligase domain VFU_RS12615 PF17848 Acetyl-coA carboxylase zinc finger domain VFU_RS12615 PF01039 Carboxyl transferase domain VFU_RS12620 PF01416 tRNA pseudouridine synthase VFU_RS12630 PF00749 tRNA synthetases class I (E and Q), catalytic domain VFU_RS12630 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VFU_RS12635 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VFU_RS12635 PF00367 phosphotransferase system, EIIB VFU_RS12635 PF02378 Phosphotransferase system, EIIC VFU_RS12640 PF01979 Amidohydrolase family VFU_RS12645 PF01047 MarR family VFU_RS12645 PF00480 ROK family VFU_RS12650 PF00999 Sodium/hydrogen exchanger family VFU_RS12650 PF02254 TrkA-N domain VFU_RS12655 PF00733 Asparagine synthase VFU_RS12655 PF13537 Glutamine amidotransferase domain VFU_RS12660 PF02357 Transcription termination factor nusG VFU_RS12665 PF00854 POT family VFU_RS12670 PF00762 Ferrochelatase VFU_RS12675 PF05191 Adenylate kinase, active site lid VFU_RS12680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS12680 PF00183 Hsp90 protein VFU_RS12685 PF00486 Transcriptional regulatory protein, C terminal VFU_RS12690 PF17323 Trans-membrane regulatory protein ToxS VFU_RS12700 PF12850 Calcineurin-like phosphoesterase superfamily domain VFU_RS12715 PF07556 Protein of unknown function (DUF1538) VFU_RS12720 PF07556 Protein of unknown function (DUF1538) VFU_RS12725 PF08338 Domain of unknown function (DUF1731) VFU_RS12725 PF01370 NAD dependent epimerase/dehydratase family VFU_RS12730 PF00106 short chain dehydrogenase VFU_RS12740 PF00085 Thioredoxin VFU_RS12745 PF01145 SPFH domain / Band 7 family VFU_RS12745 PF16200 C-terminal region of band_7 VFU_RS12755 PF13411 MerR HTH family regulatory protein VFU_RS12765 PF13609 Gram-negative porin VFU_RS12770 PF01653 NAD-dependent DNA ligase adenylation domain VFU_RS12770 PF12826 Helix-hairpin-helix motif VFU_RS12770 PF03120 NAD-dependent DNA ligase OB-fold domain VFU_RS12770 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VFU_RS12770 PF00533 BRCA1 C Terminus (BRCT) domain VFU_RS12775 PF04354 ZipA, C-terminal FtsZ-binding domain VFU_RS12785 PF00291 Pyridoxal-phosphate dependent enzyme VFU_RS12790 PF00381 PTS HPr component phosphorylation site VFU_RS12795 PF02896 PEP-utilising enzyme, TIM barrel domain VFU_RS12795 PF00391 PEP-utilising enzyme, mobile domain VFU_RS12795 PF05524 PEP-utilising enzyme, N-terminal VFU_RS12800 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VFU_RS12805 PF01494 FAD binding domain VFU_RS12810 PF00919 Uncharacterized protein family UPF0004 VFU_RS12810 PF01938 TRAM domain VFU_RS12810 PF04055 Radical SAM superfamily VFU_RS12815 PF02562 PhoH-like protein VFU_RS12820 PF02130 Uncharacterized protein family UPF0054 VFU_RS12825 PF00571 CBS domain VFU_RS12825 PF03471 Transporter associated domain VFU_RS12830 PF00795 Carbon-nitrogen hydrolase VFU_RS12835 PF07295 Zinc-ribbon containing domain VFU_RS12840 PF13603 Leucyl-tRNA synthetase, Domain 2 VFU_RS12840 PF08264 Anticodon-binding domain of tRNA VFU_RS12840 PF00133 tRNA synthetases class I (I, L, M and V) VFU_RS12845 PF04390 Lipopolysaccharide-assembly VFU_RS12850 PF06144 DNA polymerase III, delta subunit VFU_RS12850 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VFU_RS12860 PF02590 Predicted SPOUT methyltransferase VFU_RS12865 PF03717 Penicillin-binding Protein dimerisation domain VFU_RS12865 PF00905 Penicillin binding protein transpeptidase domain VFU_RS12870 PF01098 Cell cycle protein VFU_RS12875 PF05036 Sporulation related domain VFU_RS12875 PF03330 Lytic transglycolase VFU_RS12880 PF07943 Penicillin-binding protein 5, C-terminal domain VFU_RS12880 PF00768 D-alanyl-D-alanine carboxypeptidase VFU_RS12885 PF04359 Protein of unknown function (DUF493) VFU_RS12890 PF03099 Biotin/lipoate A/B protein ligase family VFU_RS12895 PF04055 Radical SAM superfamily VFU_RS12895 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VFU_RS12905 PF00464 Serine hydroxymethyltransferase VFU_RS12915 PF00873 AcrB/AcrD/AcrF family VFU_RS12920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VFU_RS12945 PF07690 Major Facilitator Superfamily VFU_RS12950 PF00196 Bacterial regulatory proteins, luxR family VFU_RS12950 PF00072 Response regulator receiver domain VFU_RS12955 PF07730 Histidine kinase VFU_RS12955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS12955 PF05231 MASE1 VFU_RS12960 PF07690 Major Facilitator Superfamily VFU_RS12965 PF00128 Alpha amylase, catalytic domain VFU_RS12965 PF16657 Maltogenic Amylase, C-terminal domain VFU_RS12970 PF00367 phosphotransferase system, EIIB VFU_RS12970 PF02378 Phosphotransferase system, EIIC VFU_RS12975 PF00356 Bacterial regulatory proteins, lacI family VFU_RS12990 PF09383 NIL domain VFU_RS12990 PF00005 ABC transporter VFU_RS12995 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS13000 PF03180 NLPA lipoprotein VFU_RS13005 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VFU_RS13010 PF07348 Syd protein (SUKH-2) VFU_RS13015 PF14489 QueF-like protein VFU_RS13015 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VFU_RS13025 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS13030 PF11892 Domain of unknown function (DUF3412) VFU_RS13030 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VFU_RS13030 PF03641 Possible lysine decarboxylase VFU_RS13035 PF03641 Possible lysine decarboxylase VFU_RS13035 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VFU_RS13035 PF11892 Domain of unknown function (DUF3412) VFU_RS13040 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VFU_RS13040 PF01367 5'-3' exonuclease, C-terminal SAM fold VFU_RS13045 PF18125 RlmM ferredoxin-like domain VFU_RS13045 PF01728 FtsJ-like methyltransferase VFU_RS13050 PF04241 Protein of unknown function (DUF423) VFU_RS13060 PF03466 LysR substrate binding domain VFU_RS13060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS13065 PF02568 Thiamine biosynthesis protein (ThiI) VFU_RS13065 PF02926 THUMP domain VFU_RS13070 PF13677 Membrane MotB of proton-channel complex MotA/MotB VFU_RS13070 PF00691 OmpA family VFU_RS13075 PF01618 MotA/TolQ/ExbB proton channel family VFU_RS13080 PF02609 Exonuclease VII small subunit VFU_RS13085 PF00348 Polyprenyl synthetase VFU_RS13090 PF02779 Transketolase, pyrimidine binding domain VFU_RS13090 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VFU_RS13090 PF02780 Transketolase, C-terminal domain VFU_RS13095 PF00849 RNA pseudouridylate synthase VFU_RS13100 PF04287 tRNA pseudouridine synthase C VFU_RS13125 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VFU_RS13135 PF00444 Ribosomal protein L36 VFU_RS13140 PF01197 Ribosomal protein L31 VFU_RS13145 PF01980 tRNA-methyltransferase O VFU_RS13145 PF18389 TrmO C-terminal domain VFU_RS13150 PF03129 Anticodon binding domain VFU_RS13150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VFU_RS13150 PF04073 Aminoacyl-tRNA editing domain VFU_RS13160 PF06786 Uncharacterised protein family (UPF0253) VFU_RS13170 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS13170 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VFU_RS13170 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region VFU_RS13180 PF00497 Bacterial extracellular solute-binding proteins, family 3 VFU_RS13180 PF01464 Transglycosylase SLT domain VFU_RS13185 PF14437 MafB19-like deaminase VFU_RS13190 PF03466 LysR substrate binding domain VFU_RS13190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS13195 PF08240 Alcohol dehydrogenase GroES-like domain VFU_RS13195 PF00107 Zinc-binding dehydrogenase VFU_RS13200 PF00756 Putative esterase VFU_RS13205 PF03806 AbgT putative transporter family VFU_RS13235 PF00226 DnaJ domain VFU_RS13235 PF01556 DnaJ C terminal domain VFU_RS13235 PF00684 DnaJ central domain VFU_RS13240 PF00012 Hsp70 protein VFU_RS13245 PF00375 Sodium:dicarboxylate symporter family VFU_RS13250 PF01025 GrpE VFU_RS13255 PF01513 ATP-NAD kinase VFU_RS13260 PF02463 RecF/RecN/SMC N terminal domain VFU_RS13265 PF04355 SmpA / OmlA family VFU_RS13270 PF03658 RnfH family Ubiquitin VFU_RS13275 PF03364 Polyketide cyclase / dehydrase and lipid transport VFU_RS13280 PF01668 SmpB protein VFU_RS13300 PF02384 N-6 DNA Methylase VFU_RS13305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS13305 PF03466 LysR substrate binding domain VFU_RS13310 PF01266 FAD dependent oxidoreductase VFU_RS13320 PF01235 Sodium:alanine symporter family VFU_RS13325 PF01758 Sodium Bile acid symporter family VFU_RS13340 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain VFU_RS13340 PF02753 Pili assembly chaperone PapD, C-terminal domain VFU_RS13345 PF00577 Outer membrane usher protein VFU_RS13345 PF13954 PapC N-terminal domain VFU_RS13345 PF13953 PapC C-terminal domain VFU_RS13350 PF00419 Fimbrial protein VFU_RS13360 PF00486 Transcriptional regulatory protein, C terminal VFU_RS13365 PF01184 GPR1/FUN34/yaaH family VFU_RS13370 PF00704 Glycosyl hydrolases family 18 VFU_RS13370 PF06483 Chitinase C VFU_RS13435 PF00589 Phage integrase family VFU_RS13435 PF13356 Arm DNA-binding domain VFU_RS13440 PF00117 Glutamine amidotransferase class-I VFU_RS13440 PF00958 GMP synthase C terminal domain VFU_RS13440 PF02540 NAD synthase VFU_RS13445 PF00571 CBS domain VFU_RS13445 PF00478 IMP dehydrogenase / GMP reductase domain VFU_RS13450 PF13742 OB-fold nucleic acid binding domain VFU_RS13450 PF02601 Exonuclease VII, large subunit VFU_RS13465 PF01926 50S ribosome-binding GTPase VFU_RS13465 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VFU_RS13470 PF13360 PQQ-like domain VFU_RS13475 PF09976 Tetratricopeptide repeat-like domain VFU_RS13480 PF13393 Histidyl-tRNA synthetase VFU_RS13480 PF03129 Anticodon binding domain VFU_RS13490 PF13464 Domain of unknown function (DUF4115) VFU_RS13495 PF04055 Radical SAM superfamily VFU_RS13500 PF00334 Nucleoside diphosphate kinase VFU_RS13505 PF00883 Cytosol aminopeptidase family, catalytic domain VFU_RS13505 PF12404 Peptidase VFU_RS13510 PF04384 Iron-sulphur cluster assembly VFU_RS13515 PF00111 2Fe-2S iron-sulfur cluster binding domain VFU_RS13520 PF00012 Hsp70 protein VFU_RS13525 PF00226 DnaJ domain VFU_RS13525 PF07743 HSCB C-terminal oligomerisation domain VFU_RS13530 PF01521 Iron-sulphur cluster biosynthesis VFU_RS13535 PF01592 NifU-like N terminal domain VFU_RS13540 PF00266 Aminotransferase class-V VFU_RS13545 PF02082 Transcriptional regulator VFU_RS13550 PF00588 SpoU rRNA Methylase family VFU_RS13555 PF00459 Inositol monophosphatase family VFU_RS13560 PF00857 Isochorismatase family VFU_RS13565 PF02355 Protein export membrane protein VFU_RS13565 PF07549 SecD/SecF GG Motif VFU_RS13570 PF02355 Protein export membrane protein VFU_RS13570 PF13721 SecD export protein N-terminal TM region VFU_RS13570 PF07549 SecD/SecF GG Motif VFU_RS13575 PF02699 Preprotein translocase subunit VFU_RS13580 PF01702 Queuine tRNA-ribosyltransferase VFU_RS13585 PF02547 Queuosine biosynthesis protein VFU_RS13590 PF00571 CBS domain VFU_RS13595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VFU_RS13595 PF00672 HAMP domain VFU_RS13600 PF00463 Isocitrate lyase family VFU_RS13605 PF01274 Malate synthase VFU_RS13610 PF03466 LysR substrate binding domain VFU_RS13610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS13615 PF00578 AhpC/TSA family VFU_RS13615 PF10417 C-terminal domain of 1-Cys peroxiredoxin VFU_RS13620 PF03932 CutC family VFU_RS13625 PF03976 Polyphosphate kinase 2 (PPK2) VFU_RS13630 PF01895 PhoU domain VFU_RS13635 PF00005 ABC transporter VFU_RS13640 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS13645 PF00528 Binding-protein-dependent transport system inner membrane component VFU_RS13650 PF13090 Polyphosphate kinase C-terminal domain 2 VFU_RS13650 PF17941 Polyphosphate kinase C-terminal domain 1 VFU_RS13650 PF02503 Polyphosphate kinase middle domain VFU_RS13650 PF13089 Polyphosphate kinase N-terminal domain VFU_RS13655 PF02541 Ppx/GppA phosphatase family VFU_RS13660 PF12849 PBP superfamily domain VFU_RS13665 PF00989 PAS fold VFU_RS13665 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS13665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS13665 PF11808 Phosphate regulon sensor protein PhoR VFU_RS13675 PF04381 Putative exonuclease, RdgC VFU_RS13680 PF01136 Peptidase family U32 VFU_RS13680 PF16325 Peptidase family U32 C-terminal domain VFU_RS13685 PF12838 4Fe-4S dicluster domain VFU_RS13690 PF07690 Major Facilitator Superfamily VFU_RS13700 PF04542 Sigma-70 region 2 VFU_RS13700 PF04545 Sigma-70, region 4 VFU_RS13710 PF03502 Nucleoside-specific channel-forming protein, Tsx VFU_RS13715 PF08546 Ketopantoate reductase PanE/ApbA C terminal VFU_RS13715 PF02558 Ketopantoate reductase PanE/ApbA VFU_RS13720 PF01965 DJ-1/PfpI family VFU_RS13725 PF00266 Aminotransferase class-V VFU_RS13730 PF02657 Fe-S metabolism associated domain VFU_RS13735 PF00899 ThiF family VFU_RS13740 PF06725 3D domain VFU_RS13740 PF03562 MltA specific insert domain VFU_RS13750 PF00583 Acetyltransferase (GNAT) family VFU_RS13750 PF00696 Amino acid kinase family VFU_RS13760 PF13538 UvrD-like helicase C-terminal domain VFU_RS13765 PF13361 UvrD-like helicase C-terminal domain VFU_RS13765 PF12705 PD-(D/E)XK nuclease superfamily VFU_RS13765 PF00580 UvrD/REP helicase N-terminal domain VFU_RS13770 PF17946 RecC C-terminal domain VFU_RS13780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS13780 PF03466 LysR substrate binding domain VFU_RS13785 PF07130 YebG protein VFU_RS13790 PF14602 Hexapeptide repeat of succinyl-transferase VFU_RS13790 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VFU_RS13795 PF00962 Adenosine/AMP deaminase VFU_RS13805 PF00583 Acetyltransferase (GNAT) family VFU_RS13815 PF01544 CorA-like Mg2+ transporter protein VFU_RS13825 PF01588 Putative tRNA binding domain VFU_RS13830 PF01263 Aldose 1-epimerase VFU_RS13840 PF02417 Chromate transporter VFU_RS13845 PF00072 Response regulator receiver domain VFU_RS13865 PF00437 Type II/IV secretion system protein VFU_RS13895 PF04972 BON domain VFU_RS13895 PF13629 Pilus formation protein N terminal region VFU_RS13895 PF00263 Bacterial type II and III secretion system protein VFU_RS13920 PF12833 Helix-turn-helix domain VFU_RS13920 PF02311 AraC-like ligand binding domain VFU_RS13925 PF00501 AMP-binding enzyme VFU_RS13930 PF03466 LysR substrate binding domain VFU_RS13930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS13940 PF03466 LysR substrate binding domain VFU_RS13940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS13945 PF00679 Elongation factor G C-terminus VFU_RS13945 PF03144 Elongation factor Tu domain 2 VFU_RS13945 PF03764 Elongation factor G, domain IV VFU_RS13945 PF14492 Elongation Factor G, domain II VFU_RS13945 PF00009 Elongation factor Tu GTP binding domain VFU_RS13950 PF18073 Rubredoxin metal binding domain VFU_RS13960 PF18429 Domain of unknown function (DUF5609) VFU_RS13970 PF01048 Phosphorylase superfamily VFU_RS13975 PF01676 Metalloenzyme superfamily VFU_RS13980 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VFU_RS13980 PF00591 Glycosyl transferase family, a/b domain VFU_RS13980 PF02885 Glycosyl transferase family, helical bundle domain VFU_RS13985 PF01791 DeoC/LacD family aldolase VFU_RS13995 PF01773 Na+ dependent nucleoside transporter N-terminus VFU_RS13995 PF07662 Na+ dependent nucleoside transporter C-terminus VFU_RS13995 PF07670 Nucleoside recognition VFU_RS14000 PF01026 TatD related DNase VFU_RS14005 PF03883 Peroxide stress protein YaaA VFU_RS14025 PF03167 Uracil DNA glycosylase superfamily VFU_RS14030 PF01261 Xylose isomerase-like TIM barrel VFU_RS14035 PF01228 Glycine radical VFU_RS14040 PF00291 Pyridoxal-phosphate dependent enzyme VFU_RS14040 PF14821 Threonine synthase N terminus VFU_RS14045 PF08544 GHMP kinases C terminal VFU_RS14045 PF00288 GHMP kinases N terminal domain VFU_RS14050 PF00742 Homoserine dehydrogenase VFU_RS14050 PF13840 ACT domain VFU_RS14050 PF00696 Amino acid kinase family VFU_RS14050 PF03447 Homoserine dehydrogenase, NAD binding domain VFU_RS14050 PF01842 ACT domain VFU_RS14060 PF03737 Aldolase/RraA VFU_RS14070 PF00486 Transcriptional regulatory protein, C terminal VFU_RS14070 PF00072 Response regulator receiver domain VFU_RS14080 PF00072 Response regulator receiver domain VFU_RS14080 PF00989 PAS fold VFU_RS14080 PF18415 Histidine kinase receptor ArcB trans-membrane domain VFU_RS14080 PF01627 Hpt domain VFU_RS14080 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS14080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS14085 PF00360 Phytochrome region VFU_RS14085 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS14085 PF01590 GAF domain VFU_RS14085 PF00563 EAL domain VFU_RS14090 PF04055 Radical SAM superfamily VFU_RS14090 PF16199 Radical_SAM C-terminal domain VFU_RS14095 PF01645 Conserved region in glutamate synthase VFU_RS14095 PF00310 Glutamine amidotransferases class-II VFU_RS14095 PF04898 Glutamate synthase central domain VFU_RS14095 PF01493 GXGXG motif VFU_RS14100 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VFU_RS14100 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS14105 PF01645 Conserved region in glutamate synthase VFU_RS14105 PF04898 Glutamate synthase central domain VFU_RS14105 PF00310 Glutamine amidotransferases class-II VFU_RS14105 PF01493 GXGXG motif VFU_RS14110 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VFU_RS14110 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS14120 PF01048 Phosphorylase superfamily VFU_RS14125 PF03186 CobD/Cbib protein VFU_RS14125 PF17113 Regulatory signalling modulator protein AmpE VFU_RS14130 PF01497 Periplasmic binding protein VFU_RS14135 PF03458 UPF0126 domain VFU_RS14155 PF03466 LysR substrate binding domain VFU_RS14155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS14160 PF01925 Sulfite exporter TauE/SafE VFU_RS14175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VFU_RS14175 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VFU_RS14175 PF02142 MGS-like domain VFU_RS14180 PF00117 Glutamine amidotransferase class-I VFU_RS14180 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VFU_RS14185 PF01113 Dihydrodipicolinate reductase, N-terminus VFU_RS14185 PF05173 Dihydrodipicolinate reductase, C-terminus VFU_RS14190 PF00293 NUDIX domain VFU_RS14195 PF07516 SecA Wing and Scaffold domain VFU_RS14195 PF01043 SecA preprotein cross-linking domain VFU_RS14195 PF07517 SecA DEAD-like domain VFU_RS14195 PF02810 SEC-C motif VFU_RS14205 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VFU_RS14210 PF00091 Tubulin/FtsZ family, GTPase domain VFU_RS14210 PF12327 FtsZ family, C-terminal domain VFU_RS14215 PF02491 SHS2 domain inserted in FTSA VFU_RS14220 PF08478 POTRA domain, FtsQ-type VFU_RS14220 PF03799 Cell division protein FtsQ VFU_RS14225 PF01225 Mur ligase family, catalytic domain VFU_RS14225 PF08245 Mur ligase middle domain VFU_RS14225 PF02875 Mur ligase family, glutamate ligase domain VFU_RS14230 PF03033 Glycosyltransferase family 28 N-terminal domain VFU_RS14230 PF04101 Glycosyltransferase family 28 C-terminal domain VFU_RS14235 PF01098 Cell cycle protein VFU_RS14240 PF08245 Mur ligase middle domain VFU_RS14240 PF02875 Mur ligase family, glutamate ligase domain VFU_RS14245 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VFU_RS14245 PF00953 Glycosyl transferase family 4 VFU_RS14250 PF02875 Mur ligase family, glutamate ligase domain VFU_RS14250 PF01225 Mur ligase family, catalytic domain VFU_RS14250 PF08245 Mur ligase middle domain VFU_RS14255 PF08245 Mur ligase middle domain VFU_RS14255 PF02875 Mur ligase family, glutamate ligase domain VFU_RS14255 PF01225 Mur ligase family, catalytic domain VFU_RS14260 PF00905 Penicillin binding protein transpeptidase domain VFU_RS14260 PF03717 Penicillin-binding Protein dimerisation domain VFU_RS14265 PF04999 Cell division protein FtsL VFU_RS14270 PF01795 MraW methylase family VFU_RS14275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VFU_RS14280 PF04348 LppC putative lipoprotein VFU_RS14285 PF02021 Uncharacterised protein family UPF0102 VFU_RS14290 PF13580 SIS domain VFU_RS14295 PF04972 BON domain VFU_RS14300 PF04386 Stringent starvation protein B VFU_RS14305 PF00043 Glutathione S-transferase, C-terminal domain VFU_RS14305 PF02798 Glutathione S-transferase, N-terminal domain VFU_RS14310 PF02167 Cytochrome C1 family VFU_RS14315 PF00032 Cytochrome b(C-terminal)/b6/petD VFU_RS14315 PF00033 Cytochrome b/b6/petB VFU_RS14320 PF00355 Rieske [2Fe-2S] domain VFU_RS14320 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VFU_RS14330 PF00380 Ribosomal protein S9/S16 VFU_RS14335 PF00572 Ribosomal protein L13 VFU_RS14340 PF03969 AFG1-like ATPase VFU_RS14345 PF06295 Protein of unknown function (DUF1043) VFU_RS14350 PF00595 PDZ domain VFU_RS14355 PF13180 PDZ domain VFU_RS14360 PF01245 Ribosomal protein L19 VFU_RS14365 PF01746 tRNA (Guanine-1)-methyltransferase VFU_RS14370 PF01782 RimM N-terminal domain VFU_RS14370 PF05239 PRC-barrel domain VFU_RS14375 PF00886 Ribosomal protein S16 VFU_RS14380 PF00448 SRP54-type protein, GTPase domain VFU_RS14380 PF02881 SRP54-type protein, helical bundle domain VFU_RS14380 PF02978 Signal peptide binding domain VFU_RS14385 PF01578 Cytochrome C assembly protein VFU_RS14390 PF01595 Cyclin M transmembrane N-terminal domain VFU_RS14390 PF03471 Transporter associated domain VFU_RS14390 PF00571 CBS domain VFU_RS14395 PF02664 S-Ribosylhomocysteinase (LuxS) VFU_RS14405 PF04262 Glutamate-cysteine ligase VFU_RS14410 PF00675 Insulinase (Peptidase family M16) VFU_RS14410 PF05193 Peptidase M16 inactive domain VFU_RS14415 PF09335 SNARE associated Golgi protein VFU_RS14420 PF08240 Alcohol dehydrogenase GroES-like domain VFU_RS14420 PF00107 Zinc-binding dehydrogenase VFU_RS14425 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VFU_RS14430 PF00364 Biotin-requiring enzyme VFU_RS14430 PF02436 Conserved carboxylase domain VFU_RS14430 PF00682 HMGL-like VFU_RS14435 PF04277 Oxaloacetate decarboxylase, gamma chain VFU_RS14465 PF02599 Global regulator protein family VFU_RS14470 PF13840 ACT domain VFU_RS14470 PF01842 ACT domain VFU_RS14470 PF00696 Amino acid kinase family VFU_RS14475 PF01411 tRNA synthetases class II (A) VFU_RS14475 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VFU_RS14475 PF02272 DHHA1 domain VFU_RS14480 PF02631 RecX family VFU_RS14485 PF00154 recA bacterial DNA recombination protein VFU_RS14490 PF02464 Competence-damaged protein VFU_RS14495 PF01624 MutS domain I VFU_RS14495 PF05188 MutS domain II VFU_RS14495 PF05192 MutS domain III VFU_RS14495 PF00488 MutS domain V VFU_RS14495 PF05190 MutS family domain IV VFU_RS14500 PF00140 Sigma-70 factor, region 1.2 VFU_RS14500 PF04545 Sigma-70, region 4 VFU_RS14500 PF04539 Sigma-70 region 3 VFU_RS14500 PF04542 Sigma-70 region 2 VFU_RS14505 PF01551 Peptidase family M23 VFU_RS14505 PF01476 LysM domain VFU_RS14515 PF01975 Survival protein SurE VFU_RS14520 PF01142 tRNA pseudouridine synthase D (TruD) VFU_RS14525 PF02542 YgbB family VFU_RS14530 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VFU_RS14535 PF04977 Septum formation initiator VFU_RS14540 PF02673 Bacitracin resistance protein BacA VFU_RS14545 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VFU_RS14550 PF02152 Dihydroneopterin aldolase VFU_RS14555 PF02660 Glycerol-3-phosphate acyltransferase VFU_RS14560 PF00561 alpha/beta hydrolase fold VFU_RS14560 PF00364 Biotin-requiring enzyme VFU_RS14565 PF00814 Glycoprotease family VFU_RS14575 PF09424 Yqey-like protein VFU_RS14580 PF01807 CHC2 zinc finger VFU_RS14580 PF10410 DnaB-helicase binding domain of primase VFU_RS14580 PF08278 DNA primase DnaG DnaB-binding VFU_RS14580 PF08275 DNA primase catalytic core, N-terminal domain VFU_RS14585 PF04542 Sigma-70 region 2 VFU_RS14585 PF04546 Sigma-70, non-essential region VFU_RS14585 PF03979 Sigma-70 factor, region 1.1 VFU_RS14585 PF00140 Sigma-70 factor, region 1.2 VFU_RS14585 PF04539 Sigma-70 region 3 VFU_RS14585 PF04545 Sigma-70, region 4 VFU_RS14615 PF00589 Phage integrase family VFU_RS14615 PF02899 Phage integrase, N-terminal SAM-like domain VFU_RS14675 PF08220 DeoR-like helix-turn-helix domain VFU_RS14675 PF13280 WYL domain VFU_RS14685 PF00155 Aminotransferase class I and II VFU_RS14690 PF00367 phosphotransferase system, EIIB VFU_RS14690 PF02378 Phosphotransferase system, EIIC VFU_RS14695 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VFU_RS14695 PF00356 Bacterial regulatory proteins, lacI family VFU_RS14705 PF03448 MgtE intracellular N domain VFU_RS14705 PF01769 Divalent cation transporter VFU_RS14705 PF00571 CBS domain VFU_RS14720 PF01380 SIS domain VFU_RS14725 PF00455 DeoR C terminal sensor domain VFU_RS14725 PF08220 DeoR-like helix-turn-helix domain VFU_RS14730 PF02887 Pyruvate kinase, alpha/beta domain VFU_RS14730 PF00224 Pyruvate kinase, barrel domain VFU_RS14740 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS14750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS14750 PF03466 LysR substrate binding domain VFU_RS14755 PF01810 LysE type translocator VFU_RS14765 PF00924 Mechanosensitive ion channel VFU_RS14765 PF05552 Conserved TM helix VFU_RS14770 PF01116 Fructose-bisphosphate aldolase class-II VFU_RS14775 PF00162 Phosphoglycerate kinase VFU_RS14780 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VFU_RS14780 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VFU_RS14785 PF00593 TonB dependent receptor VFU_RS14785 PF07715 TonB-dependent Receptor Plug Domain VFU_RS14790 PF03466 LysR substrate binding domain VFU_RS14790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS14795 PF02780 Transketolase, C-terminal domain VFU_RS14795 PF02779 Transketolase, pyrimidine binding domain VFU_RS14795 PF00456 Transketolase, thiamine diphosphate binding domain VFU_RS14800 PF00438 S-adenosylmethionine synthetase, N-terminal domain VFU_RS14800 PF02772 S-adenosylmethionine synthetase, central domain VFU_RS14800 PF02773 S-adenosylmethionine synthetase, C-terminal domain VFU_RS14810 PF17283 SprT-like zinc ribbon domain VFU_RS14810 PF10263 SprT-like family VFU_RS14815 PF04231 Endonuclease I VFU_RS14820 PF04452 RNA methyltransferase VFU_RS14825 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VFU_RS14825 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VFU_RS14830 PF02622 Uncharacterized ACR, COG1678 VFU_RS14835 PF03652 Holliday junction resolvase VFU_RS14840 PF00437 Type II/IV secretion system protein VFU_RS14845 PF00437 Type II/IV secretion system protein VFU_RS14850 PF01168 Alanine racemase, N-terminal domain VFU_RS14855 PF03807 NADP oxidoreductase coenzyme F420-dependent VFU_RS14855 PF14748 Pyrroline-5-carboxylate reductase dimerisation VFU_RS14860 PF02325 YGGT family VFU_RS14865 PF02594 Uncharacterised ACR, YggU family COG1872 VFU_RS14875 PF01725 Ham1 family VFU_RS14880 PF04055 Radical SAM superfamily VFU_RS14880 PF06969 HemN C-terminal domain VFU_RS14885 PF04960 Glutaminase VFU_RS14890 PF02390 Putative methyltransferase VFU_RS14895 PF00730 HhH-GPD superfamily base excision DNA repair protein VFU_RS14895 PF14815 NUDIX domain VFU_RS14900 PF00005 ABC transporter VFU_RS14905 PF01032 FecCD transport family VFU_RS14910 PF01497 Periplasmic binding protein VFU_RS14915 PF04362 Bacterial Fe(2+) trafficking VFU_RS14920 PF01464 Transglycosylase SLT domain VFU_RS14920 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VFU_RS14970 PF05099 Tellurite resistance protein TerB VFU_RS14970 PF00226 DnaJ domain VFU_RS14975 PF04453 LPS transport system D VFU_RS14975 PF03968 OstA-like protein VFU_RS14980 PF09312 SurA N-terminal domain VFU_RS14985 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VFU_RS14990 PF00398 Ribosomal RNA adenine dimethylase VFU_RS14995 PF04379 ApaG domain VFU_RS15000 PF00149 Calcineurin-like phosphoesterase VFU_RS15005 PF00186 Dihydrofolate reductase VFU_RS15010 PF12821 Threonine/Serine exporter, ThrE VFU_RS15015 PF06738 Putative threonine/serine exporter VFU_RS15020 PF01926 50S ribosome-binding GTPase VFU_RS15020 PF01018 GTP1/OBG VFU_RS15025 PF01016 Ribosomal L27 protein VFU_RS15030 PF00829 Ribosomal prokaryotic L21 protein VFU_RS15035 PF00348 Polyprenyl synthetase VFU_RS15040 PF13520 Amino acid permease VFU_RS15045 PF00056 lactate/malate dehydrogenase, NAD binding domain VFU_RS15045 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VFU_RS15050 PF02863 Arginine repressor, C-terminal domain VFU_RS15050 PF01316 Arginine repressor, DNA binding domain VFU_RS15065 PF00582 Universal stress protein family VFU_RS15080 PF06877 Regulator of ribonuclease activity B VFU_RS15085 PF01523 Putative modulator of DNA gyrase VFU_RS15090 PF00795 Carbon-nitrogen hydrolase VFU_RS15095 PF13116 Protein of unknown function VFU_RS15095 PF13502 AsmA-like C-terminal region VFU_RS15100 PF10150 Ribonuclease E/G family VFU_RS15100 PF00575 S1 RNA binding domain VFU_RS15105 PF02545 Maf-like protein VFU_RS15110 PF04093 rod shape-determining protein MreD VFU_RS15115 PF04085 rod shape-determining protein MreC VFU_RS15155 PF07963 Prokaryotic N-terminal methylation motif VFU_RS15155 PF00114 Pilin (bacterial filament) VFU_RS15160 PF07963 Prokaryotic N-terminal methylation motif VFU_RS15170 PF00482 Type II secretion system (T2SS), protein F VFU_RS15175 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VFU_RS15175 PF00437 Type II/IV secretion system protein VFU_RS15185 PF13401 AAA domain VFU_RS15185 PF01471 Putative peptidoglycan binding domain VFU_RS15190 PF00263 Bacterial type II and III secretion system protein VFU_RS15190 PF03958 Bacterial type II/III secretion system short domain VFU_RS15210 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS15210 PF17157 Gammaproteobacterial periplasmic sensor domain VFU_RS15210 PF00563 EAL domain VFU_RS15215 PF00436 Single-strand binding protein family VFU_RS15220 PF00196 Bacterial regulatory proteins, luxR family VFU_RS15225 PF00483 Nucleotidyl transferase VFU_RS15230 PF00005 ABC transporter VFU_RS15230 PF17755 UvrA DNA-binding domain VFU_RS15230 PF17760 UvrA interaction domain VFU_RS15240 PF00266 Aminotransferase class-V VFU_RS15245 PF01842 ACT domain VFU_RS15245 PF00696 Amino acid kinase family VFU_RS15250 PF02574 Homocysteine S-methyltransferase VFU_RS15250 PF02965 Vitamin B12 dependent methionine synthase, activation domain VFU_RS15250 PF02310 B12 binding domain VFU_RS15250 PF02607 B12 binding domain VFU_RS15250 PF00809 Pterin binding enzyme VFU_RS15255 PF00999 Sodium/hydrogen exchanger family VFU_RS15290 PF01507 Phosphoadenosine phosphosulfate reductase family VFU_RS15295 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VFU_RS15295 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VFU_RS15300 PF00667 FAD binding domain VFU_RS15300 PF00258 Flavodoxin VFU_RS15300 PF00175 Oxidoreductase NAD-binding domain VFU_RS15320 PF01207 Dihydrouridine synthase (Dus) VFU_RS15325 PF01475 Ferric uptake regulator family VFU_RS15340 PF01894 Uncharacterised protein family UPF0047 VFU_RS15345 PF00842 Alanine racemase, C-terminal domain VFU_RS15345 PF01168 Alanine racemase, N-terminal domain VFU_RS15350 PF03796 DnaB-like helicase C terminal domain VFU_RS15350 PF00772 DnaB-like helicase N terminal domain VFU_RS15360 PF01281 Ribosomal protein L9, N-terminal domain VFU_RS15360 PF03948 Ribosomal protein L9, C-terminal domain VFU_RS15365 PF01084 Ribosomal protein S18 VFU_RS15370 PF01250 Ribosomal protein S6 VFU_RS15375 PF00210 Ferritin-like domain VFU_RS15380 PF04324 BFD-like [2Fe-2S] binding domain VFU_RS15385 PF00009 Elongation factor Tu GTP binding domain VFU_RS15385 PF03143 Elongation factor Tu C-terminal domain VFU_RS15385 PF03144 Elongation factor Tu domain 2 VFU_RS15580 PF05000 RNA polymerase Rpb1, domain 4 VFU_RS15580 PF04998 RNA polymerase Rpb1, domain 5 VFU_RS15580 PF04983 RNA polymerase Rpb1, domain 3 VFU_RS15580 PF00623 RNA polymerase Rpb1, domain 2 VFU_RS15580 PF04997 RNA polymerase Rpb1, domain 1 VFU_RS15615 PF00009 Elongation factor Tu GTP binding domain VFU_RS15615 PF03143 Elongation factor Tu C-terminal domain VFU_RS15615 PF03144 Elongation factor Tu domain 2 VFU_RS15630 PF00485 Phosphoribulokinase / Uridine kinase family VFU_RS15665 PF13091 PLD-like domain VFU_RS16035 PF00501 AMP-binding enzyme VFU_RS16145 PF06082 Exopolysaccharide biosynthesis protein YbjH VFU_RS16235 PF13439 Glycosyltransferase Family 4 VFU_RS16235 PF00534 Glycosyl transferases group 1 VFU_RS16375 PF00873 AcrB/AcrD/AcrF family VFU_RS16595 PF00271 Helicase conserved C-terminal domain VFU_RS16595 PF00570 HRDC domain VFU_RS16595 PF09382 RQC domain VFU_RS16595 PF16124 RecQ zinc-binding VFU_RS16595 PF00270 DEAD/DEAH box helicase VFU_RS16870 PF01327 Polypeptide deformylase VFU_RS17140 PF02874 ATP synthase alpha/beta family, beta-barrel domain VFU_RS17140 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VFU_RS17170 PF03466 LysR substrate binding domain VFU_RS17170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VFU_RS17195 PF02386 Cation transport protein VFU_RS17405 PF00892 EamA-like transporter family VFU_RS17445 PF00005 ABC transporter VFU_RS17450 PF00005 ABC transporter VFU_RS17535 PF01367 5'-3' exonuclease, C-terminal SAM fold VFU_RS17535 PF00476 DNA polymerase family A VFU_RS17535 PF01612 3'-5' exonuclease VFU_RS17535 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VFU_RS17740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VFU_RS17740 PF07992 Pyridine nucleotide-disulphide oxidoreductase VFU_RS17845 PF00679 Elongation factor G C-terminus VFU_RS17845 PF03144 Elongation factor Tu domain 2 VFU_RS17845 PF00009 Elongation factor Tu GTP binding domain VFU_RS18155 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS18900 PF13638 PIN domain VFU_RS18900 PF02562 PhoH-like protein VFU_RS18960 PF00883 Cytosol aminopeptidase family, catalytic domain VFU_RS18960 PF02789 Cytosol aminopeptidase family, N-terminal domain VFU_RS19105 PF00563 EAL domain VFU_RS19105 PF03707 Bacterial signalling protein N terminal repeat VFU_RS19105 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS19285 PF10502 Signal peptidase, peptidase S26 VFU_RS19450 PF01751 Toprim domain VFU_RS19450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS19450 PF00986 DNA gyrase B subunit, carboxyl terminus VFU_RS19450 PF00204 DNA gyrase B VFU_RS19470 PF03989 DNA gyrase C-terminal domain, beta-propeller VFU_RS19470 PF00521 DNA gyrase/topoisomerase IV, subunit A VFU_RS19555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VFU_RS19555 PF00364 Biotin-requiring enzyme VFU_RS19555 PF02817 e3 binding domain VFU_RS19610 PF04408 Helicase associated domain (HA2) VFU_RS19610 PF00270 DEAD/DEAH box helicase VFU_RS19610 PF00271 Helicase conserved C-terminal domain VFU_RS19610 PF08482 ATP-dependent helicase C-terminal VFU_RS19635 PF00330 Aconitase family (aconitate hydratase) VFU_RS19635 PF06434 Aconitate hydratase 2 N-terminus VFU_RS19635 PF11791 Aconitate B N-terminal domain VFU_RS19685 PF06165 Glycosyltransferase family 36 VFU_RS19685 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VFU_RS19945 PF01136 Peptidase family U32 VFU_RS19960 PF00990 Diguanylate cyclase, GGDEF domain VFU_RS19960 PF00563 EAL domain VFU_RS19960 PF03707 Bacterial signalling protein N terminal repeat VFU_RS20050 PF02690 Na+/Pi-cotransporter VFU_RS20285 PF05175 Methyltransferase small domain VFU_RS20300 PF02508 Rnf-Nqr subunit, membrane protein VFU_RS20310 PF00175 Oxidoreductase NAD-binding domain VFU_RS20310 PF00970 Oxidoreductase FAD-binding domain VFU_RS20310 PF00111 2Fe-2S iron-sulfur cluster binding domain VFU_RS20455 PF01909 Nucleotidyltransferase domain VFU_RS20455 PF01966 HD domain VFU_RS20455 PF08335 GlnD PII-uridylyltransferase VFU_RS20480 PF01255 Putative undecaprenyl diphosphate synthase VFU_RS20525 PF02684 Lipid-A-disaccharide synthetase VFU_RS20550 PF09179 TilS substrate binding domain VFU_RS20550 PF01171 PP-loop family VFU_RS20550 PF11734 TilS substrate C-terminal domain VFU_RS20555 PF01171 PP-loop family VFU_RS20555 PF11734 TilS substrate C-terminal domain VFU_RS20555 PF09179 TilS substrate binding domain VFU_RS20600 PF09317 Domain of unknown function (DUF1974) VFU_RS20600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VFU_RS20600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VFU_RS20665 PF03173 Putative carbohydrate binding domain VFU_RS20665 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VFU_RS20665 PF00728 Glycosyl hydrolase family 20, catalytic domain VFU_RS20665 PF02838 Glycosyl hydrolase family 20, domain 2 VFU_RS20760 PF02119 Flagellar P-ring protein VFU_RS20865 PF03358 NADPH-dependent FMN reductase VFU_RS21050 PF08345 Flagellar M-ring protein C-terminal VFU_RS21050 PF01514 Secretory protein of YscJ/FliF family VFU_RS21515 PF00916 Sulfate permease family VFU_RS21515 PF01740 STAS domain VFU_RS21650 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VFU_RS21650 PF07733 Bacterial DNA polymerase III alpha NTPase domain VFU_RS21650 PF01336 OB-fold nucleic acid binding domain VFU_RS21650 PF02811 PHP domain VFU_RS21650 PF14579 Helix-hairpin-helix motif VFU_RS21740 PF07690 Major Facilitator Superfamily VFU_RS21860 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VFU_RS21970 PF00072 Response regulator receiver domain VFU_RS21970 PF02954 Bacterial regulatory protein, Fis family VFU_RS21970 PF00158 Sigma-54 interaction domain VFU_RS21980 PF08345 Flagellar M-ring protein C-terminal VFU_RS21980 PF01514 Secretory protein of YscJ/FliF family VFU_RS22240 PF07690 Major Facilitator Superfamily VFU_RS22435 PF00593 TonB dependent receptor VFU_RS22435 PF07715 TonB-dependent Receptor Plug Domain VFU_RS22445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VFU_RS22445 PF00512 His Kinase A (phospho-acceptor) domain VFU_RS22455 PF00367 phosphotransferase system, EIIB VFU_RS22455 PF02378 Phosphotransferase system, EIIC VFU_RS22655 PF02653 Branched-chain amino acid transport system / permease component VFU_RS22695 PF16193 AAA C-terminal domain VFU_RS22695 PF12002 MgsA AAA+ ATPase C terminal VFU_RS22695 PF00004 ATPase family associated with various cellular activities (AAA) VFU_RS22705 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VFU_RS22705 PF02403 Seryl-tRNA synthetase N-terminal domain VFU_RS22730 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VFU_RS22730 PF00384 Molybdopterin oxidoreductase VFU_RS22730 PF01568 Molydopterin dinucleotide binding domain VFU_RS22730 PF04324 BFD-like [2Fe-2S] binding domain VFU_RS22760 PF00936 BMC domain