AL543_RS00045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS00065 SM00487 DEAD-like helicases superfamily AL543_RS00065 SM00490 helicase superfamily c-terminal domain AL543_RS00085 SM00420 helix_turn_helix, Deoxyribose operon repressor AL543_RS00085 SM01134 AL543_RS00085 AL543_RS00100 SM01007 Class II Aldolase and Adducin N-terminal domain AL543_RS00280 SM00530 Helix-turn-helix XRE-family like proteins AL543_RS00310 SM00829 Enoylreductase AL543_RS00345 SM00267 diguanylate cyclase AL543_RS00345 SM00448 cheY-homologous receiver domain AL543_RS00350 SM00091 PAS domain AL543_RS00350 SM00387 Histidine kinase-like ATPases AL543_RS00350 SM00388 His Kinase A (phosphoacceptor) domain AL543_RS00350 SM00448 cheY-homologous receiver domain AL543_RS00350 SM01079 AL543_RS00350 AL543_RS00360 SM00481 DNA polymerase alpha chain like domain AL543_RS00375 SM01350 AL543_RS00375 AL543_RS00415 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS00415 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS00430 SM00729 Elongator protein 3, MiaB family, Radical SAM AL543_RS00460 SM00382 ATPases associated with a variety of cellular activities AL543_RS00500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS00500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS00515 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS00550 SM00382 ATPases associated with a variety of cellular activities AL543_RS00560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_RS00565 SM00357 Cold shock protein domain AL543_RS00580 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS00590 SM00267 diguanylate cyclase AL543_RS00595 SM00420 helix_turn_helix, Deoxyribose operon repressor AL543_RS00595 SM01134 AL543_RS00595 AL543_RS00635 SM00382 ATPases associated with a variety of cellular activities AL543_RS00650 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AL543_RS00660 SM00421 helix_turn_helix, Lux Regulon AL543_RS00685 SM00260 Two component signalling adaptor domain AL543_RS00685 SM00448 cheY-homologous receiver domain AL543_RS00690 SM00347 helix_turn_helix multiple antibiotic resistance protein AL543_RS00695 SM00267 diguanylate cyclase AL543_RS00705 SM00530 Helix-turn-helix XRE-family like proteins AL543_RS00710 SM00267 diguanylate cyclase AL543_RS00710 SM01079 AL543_RS00710 AL543_RS00735 SM00267 diguanylate cyclase AL543_RS00770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS00770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS00785 SM00382 ATPases associated with a variety of cellular activities AL543_RS00850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS00860 SM01321 AL543_RS00860 AL543_RS00870 SM00382 ATPases associated with a variety of cellular activities AL543_RS00880 SM00062 Bacterial periplasmic substrate-binding proteins AL543_RS00925 SM00849 Metallo-beta-lactamase superfamily AL543_RS00955 SM00347 helix_turn_helix multiple antibiotic resistance protein AL543_RS00960 SM00450 Rhodanese Homology Domain AL543_RS00980 SM00829 Enoylreductase AL543_RS01055 SM00421 helix_turn_helix, Lux Regulon AL543_RS01080 SM00344 helix_turn_helix ASNC type AL543_RS01085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS01085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS01110 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS01125 SM00421 helix_turn_helix, Lux Regulon AL543_RS01145 SM00052 Putative diguanylate phosphodiesterase AL543_RS01145 SM00267 diguanylate cyclase AL543_RS01150 SM00382 ATPases associated with a variety of cellular activities AL543_RS01170 SM00331 Sigma factor PP2C-like phosphatases AL543_RS01170 SM00448 cheY-homologous receiver domain AL543_RS01180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS01185 SM00448 cheY-homologous receiver domain AL543_RS01200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS01200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS01205 SM00260 Two component signalling adaptor domain AL543_RS01210 SM00260 Two component signalling adaptor domain AL543_RS01215 SM00073 Histidine Phosphotransfer domain AL543_RS01215 SM00260 Two component signalling adaptor domain AL543_RS01215 SM00387 Histidine kinase-like ATPases AL543_RS01215 SM01231 AL543_RS01215 AL543_RS01220 SM00448 cheY-homologous receiver domain AL543_RS01245 SM00382 ATPases associated with a variety of cellular activities AL543_RS01255 SM01321 AL543_RS01255 AL543_RS01260 SM00387 Histidine kinase-like ATPases AL543_RS01260 SM00388 His Kinase A (phosphoacceptor) domain AL543_RS01265 SM00448 cheY-homologous receiver domain AL543_RS01265 SM00862 Transcriptional regulatory protein, C terminal AL543_RS01275 SM00822 AL543_RS01275 AL543_RS01280 SM01236 AL543_RS01280 AL543_RS01305 SM00470 ParB-like nuclease domain AL543_RS01360 SM00421 helix_turn_helix, Lux Regulon AL543_RS01375 SM00642 Alpha-amylase domain AL543_RS01430 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL543_RS01430 SM00495 Chitin-binding domain type 3 AL543_RS01430 SM00636 AL543_RS01430 AL543_RS01455 SM00014 Acid phosphatase homologues AL543_RS01505 SM00530 Helix-turn-helix XRE-family like proteins AL543_RS01515 SM00245 tail specific protease AL543_RS01530 SM00267 diguanylate cyclase AL543_RS01535 SM00028 Tetratricopeptide repeats AL543_RS01560 SM00422 helix_turn_helix, mercury resistance AL543_RS01570 SM00257 Lysin motif AL543_RS01580 SM00487 DEAD-like helicases superfamily AL543_RS01580 SM00490 helicase superfamily c-terminal domain AL543_RS01585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS01585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS01605 SM00382 ATPases associated with a variety of cellular activities AL543_RS01610 SM00267 diguanylate cyclase AL543_RS01640 SM00052 Putative diguanylate phosphodiesterase AL543_RS01640 SM00267 diguanylate cyclase AL543_RS01655 SM00422 helix_turn_helix, mercury resistance AL543_RS01670 SM00388 His Kinase A (phosphoacceptor) domain AL543_RS01710 SM00347 helix_turn_helix multiple antibiotic resistance protein AL543_RS01730 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS01745 SM00382 ATPases associated with a variety of cellular activities AL543_RS01810 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL543_RS01810 SM00895 AL543_RS01810 AL543_RS01820 SM00487 DEAD-like helicases superfamily AL543_RS01820 SM00490 helicase superfamily c-terminal domain AL543_RS01835 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS01855 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS01855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS01865 SM01321 AL543_RS01865 AL543_RS01870 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS01870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS01885 SM00642 Alpha-amylase domain AL543_RS01900 SM00671 Sel1-like repeats. AL543_RS01915 SM01154 AL543_RS01915 AL543_RS01935 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS01935 SM01009 AlkA N-terminal domain AL543_RS01955 SM00387 Histidine kinase-like ATPases AL543_RS01960 SM00448 cheY-homologous receiver domain AL543_RS02035 SM00450 Rhodanese Homology Domain AL543_RS02040 SM00052 Putative diguanylate phosphodiesterase AL543_RS02055 SM01321 AL543_RS02055 AL543_RS02120 SM00382 ATPases associated with a variety of cellular activities AL543_RS02120 SM01086 C-terminal, D2-small domain, of ClpB protein AL543_RS02125 SM00382 ATPases associated with a variety of cellular activities AL543_RS02185 SM00382 ATPases associated with a variety of cellular activities AL543_RS02205 SM00354 helix_turn _helix lactose operon repressor AL543_RS02220 SM00100 Cyclic nucleotide-monophosphate binding domain AL543_RS02240 SM00495 Chitin-binding domain type 3 AL543_RS02245 SM00091 PAS domain AL543_RS02245 SM00387 Histidine kinase-like ATPases AL543_RS02245 SM00388 His Kinase A (phosphoacceptor) domain AL543_RS02250 SM00382 ATPases associated with a variety of cellular activities AL543_RS02250 SM00448 cheY-homologous receiver domain AL543_RS02300 SM00354 helix_turn _helix lactose operon repressor AL543_RS02340 SM00267 diguanylate cyclase AL543_RS02345 SM00357 Cold shock protein domain AL543_RS02350 SM01321 AL543_RS02350 AL543_RS02380 SM00028 Tetratricopeptide repeats AL543_RS02385 SM00327 von Willebrand factor (vWF) type A domain AL543_RS02435 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL543_RS02435 SM00382 ATPases associated with a variety of cellular activities AL543_RS02445 SM00357 Cold shock protein domain AL543_RS02465 SM00448 cheY-homologous receiver domain AL543_RS02470 SM00091 PAS domain AL543_RS02505 SM01240 AL543_RS02505 AL543_RS02530 SM00387 Histidine kinase-like ATPases AL543_RS02600 SM01040 BRO family, N-terminal domain AL543_RS02740 SM00487 DEAD-like helicases superfamily AL543_RS02740 SM00490 helicase superfamily c-terminal domain AL543_RS02760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS02760 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS02765 SM00448 cheY-homologous receiver domain AL543_RS02765 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_RS02770 SM00387 Histidine kinase-like ATPases AL543_RS02795 SM00267 diguanylate cyclase AL543_RS02805 SM00458 Ricin-type beta-trefoil AL543_RS02810 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS02810 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS02815 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL543_RS02845 SM00382 ATPases associated with a variety of cellular activities AL543_RS02850 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS02910 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AL543_RS02920 SM01007 Class II Aldolase and Adducin N-terminal domain AL543_RS02935 SM00420 helix_turn_helix, Deoxyribose operon repressor AL543_RS02935 SM01134 AL543_RS02935 AL543_RS02965 SM01007 Class II Aldolase and Adducin N-terminal domain AL543_RS03050 SM00357 Cold shock protein domain AL543_RS03050 SM00955 AL543_RS03050 AL543_RS03055 SM00487 DEAD-like helicases superfamily AL543_RS03055 SM00490 helicase superfamily c-terminal domain AL543_RS03060 SM00020 Trypsin-like serine protease AL543_RS03105 SM00271 DnaJ molecular chaperone homology domain AL543_RS03115 SM00052 Putative diguanylate phosphodiesterase AL543_RS03115 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL543_RS03115 SM00267 diguanylate cyclase AL543_RS03130 SM00382 ATPases associated with a variety of cellular activities AL543_RS03140 SM00984 UDP binding domain AL543_RS03150 SM00797 Allophanate hydrolase subunit 2 AL543_RS03155 SM00796 Allophanate hydrolase subunit 1 AL543_RS03190 SM00487 DEAD-like helicases superfamily AL543_RS03190 SM00490 helicase superfamily c-terminal domain AL543_RS03215 SM00382 ATPases associated with a variety of cellular activities AL543_RS03220 SM00327 von Willebrand factor (vWF) type A domain AL543_RS03230 SM00382 ATPases associated with a variety of cellular activities AL543_RS03235 SM00062 Bacterial periplasmic substrate-binding proteins AL543_RS03235 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL543_RS03400 SM00387 Histidine kinase-like ATPases AL543_RS03400 SM00388 His Kinase A (phosphoacceptor) domain AL543_RS03400 SM00448 cheY-homologous receiver domain AL543_RS03435 SM00382 ATPases associated with a variety of cellular activities AL543_RS03495 SM00014 Acid phosphatase homologues AL543_RS03505 SM00851 MGS-like domain AL543_RS03515 SM00387 Histidine kinase-like ATPases AL543_RS03515 SM00388 His Kinase A (phosphoacceptor) domain AL543_RS03515 SM00448 cheY-homologous receiver domain AL543_RS03540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS03540 SM00387 Histidine kinase-like ATPases AL543_RS03540 SM00388 His Kinase A (phosphoacceptor) domain AL543_RS03545 SM00448 cheY-homologous receiver domain AL543_RS03560 SM00495 Chitin-binding domain type 3 AL543_RS03560 SM00636 AL543_RS03560 AL543_RS03570 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL543_RS03570 SM00267 diguanylate cyclase AL543_RS03615 SM01081 Putative carbohydrate binding domain AL543_RS03620 SM00822 AL543_RS03620 AL543_RS03695 SM00028 Tetratricopeptide repeats AL543_RS03720 SM00382 ATPases associated with a variety of cellular activities AL543_RS03740 SM00387 Histidine kinase-like ATPases AL543_RS03745 SM00421 helix_turn_helix, Lux Regulon AL543_RS03745 SM00448 cheY-homologous receiver domain AL543_RS03750 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_RS03770 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL543_RS03785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS03785 SM00387 Histidine kinase-like ATPases AL543_RS03790 SM00421 helix_turn_helix, Lux Regulon AL543_RS03790 SM00448 cheY-homologous receiver domain AL543_RS03805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS03805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS03825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS03870 SM00563 Phosphate acyltransferases AL543_RS03895 SM00450 Rhodanese Homology Domain AL543_RS03905 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL543_RS03930 SM01321 AL543_RS03930 AL543_RS04010 SM00861 Transketolase, pyrimidine binding domain AL543_RS04030 SM00636 AL543_RS04030 AL543_RS04035 SM00450 Rhodanese Homology Domain AL543_RS04050 SM00852 Probable molybdopterin binding domain AL543_RS04125 SM00382 ATPases associated with a variety of cellular activities AL543_RS04135 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL543_RS04135 SM00866 AL543_RS04135 AL543_RS04185 SM00382 ATPases associated with a variety of cellular activities AL543_RS04255 SM00881 CoA binding domain AL543_RS04285 SM00382 ATPases associated with a variety of cellular activities AL543_RS04290 SM00382 ATPases associated with a variety of cellular activities AL543_RS04315 SM00822 AL543_RS04315 AL543_RS04315 SM00823 Phosphopantetheine attachment site AL543_RS04315 SM00825 Beta-ketoacyl synthase AL543_RS04315 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AL543_RS04320 SM00823 Phosphopantetheine attachment site AL543_RS04335 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS04340 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS04365 SM00530 Helix-turn-helix XRE-family like proteins AL543_RS04390 SM00530 Helix-turn-helix XRE-family like proteins AL543_RS04410 SM00448 cheY-homologous receiver domain AL543_RS04410 SM00862 Transcriptional regulatory protein, C terminal AL543_RS04415 SM00387 Histidine kinase-like ATPases AL543_RS04415 SM00388 His Kinase A (phosphoacceptor) domain AL543_RS04425 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL543_RS04425 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL543_RS04440 SM00267 diguanylate cyclase AL543_RS04460 SM00062 Bacterial periplasmic substrate-binding proteins AL543_RS04460 SM00267 diguanylate cyclase AL543_RS04495 SM00782 PhnA Zinc-Ribbon AL543_RS04530 SM00116 Domain in cystathionine beta-synthase and other proteins. AL543_RS04535 SM00867 YceI-like domain AL543_RS04550 SM00052 Putative diguanylate phosphodiesterase AL543_RS04555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS04555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS04560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS04560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS04590 SM01130 AL543_RS04590 AL543_RS04655 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL543_RS04680 SM00387 Histidine kinase-like ATPases AL543_RS04680 SM00448 cheY-homologous receiver domain AL543_RS04695 SM00354 helix_turn _helix lactose operon repressor AL543_RS04715 SM00052 Putative diguanylate phosphodiesterase AL543_RS04745 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS04835 SM00360 RNA recognition motif AL543_RS04955 SM00360 RNA recognition motif AL543_RS05270 SM01266 AL543_RS05270 AL543_RS05280 SM00530 Helix-turn-helix XRE-family like proteins AL543_RS05395 SM01022 AL543_RS05395 AL543_RS05525 SM01022 AL543_RS05525 AL543_RS05630 SM01321 AL543_RS05630 AL543_RS05650 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL543_RS05660 SM00530 Helix-turn-helix XRE-family like proteins AL543_RS05685 SM01057 Eukaryotic-type carbonic anhydrase AL543_RS05700 SM00936 Penicillin-binding protein 5, C-terminal domain AL543_RS05705 SM00346 helix_turn_helix isocitrate lyase regulation AL543_RS05710 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL543_RS05715 SM00382 ATPases associated with a variety of cellular activities AL543_RS05755 SM00267 diguanylate cyclase AL543_RS05815 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS05835 SM00924 MgtE intracellular N domain AL543_RS05860 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS05860 SM00871 Bacterial transcription activator, effector binding domain AL543_RS05865 SM00342 helix_turn_helix, arabinose operon control protein AL543_RS05915 SM01266 AL543_RS05915 AL543_RS05920 SM01091 Transporter associated domain AL543_RS05935 SM00052 Putative diguanylate phosphodiesterase AL543_RS05935 SM00267 diguanylate cyclase AL543_RS05940 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_RS05960 SM00267 diguanylate cyclase AL543_RS05970 SM00448 cheY-homologous receiver domain AL543_RS05970 SM00850 LytTr DNA-binding domain AL543_RS05975 SM00387 Histidine kinase-like ATPases AL543_RS05995 SM00382 ATPases associated with a variety of cellular activities AL543_RS06010 SM00642 Alpha-amylase domain AL543_RS06025 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL543_RS06025 SM00091 PAS domain AL543_RS06035 SM00267 diguanylate cyclase AL543_RS07100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL543_RS07245 SM00331 Sigma factor PP2C-like phosphatases AL543_RS09720 SM00388 His Kinase A (phosphoacceptor) domain AL543_RS09930 SM00636 AL543_RS09930 AL543_RS10950 SM00062 Bacterial periplasmic substrate-binding proteins AL543_RS12495 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL543_RS13255 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL543_RS13510 SM00433 TopoisomeraseII AL543_RS13840 SM01329 AL543_RS13840 AL543_RS13905 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL543_RS14525 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL543_RS14840 SM00954 Region found in RelA / SpoT proteins AL543_RS16725 SM00851 MGS-like domain AL543_RS16875 SM00382 ATPases associated with a variety of cellular activities AL543_RS17100 SM00257 Lysin motif AL543_RS17100 SM00646 AL543_RS17100 AL543_RS17370 SM00052 Putative diguanylate phosphodiesterase AL543_RS17815 SM01321 AL543_RS17815 AL543_RS18180 SM00847 Helicase associated domain (HA2) Add an annotation AL543_RS19605 SM00861 Transketolase, pyrimidine binding domain