locus-tag class description AL543_RS00005 PF04055 Radical SAM superfamily AL543_RS00005 PF13186 Iron-sulfur cluster-binding domain AL543_RS00010 PF00884 Sulfatase AL543_RS00015 PF03466 LysR substrate binding domain AL543_RS00015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS00020 PF07690 Major Facilitator Superfamily AL543_RS00030 PF01717 Cobalamin-independent synthase, Catalytic domain AL543_RS00030 PF08267 Cobalamin-independent synthase, N-terminal domain AL543_RS00040 PF13358 DDE superfamily endonuclease AL543_RS00050 PF08240 Alcohol dehydrogenase GroES-like domain AL543_RS00050 PF00107 Zinc-binding dehydrogenase AL543_RS00055 PF00672 HAMP domain AL543_RS00055 PF02743 Cache domain AL543_RS00055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS00075 PF01551 Peptidase family M23 AL543_RS00080 PF05638 Type VI secretion system effector, Hcp AL543_RS00090 PF00455 DeoR C terminal sensor domain AL543_RS00090 PF08220 DeoR-like helix-turn-helix domain AL543_RS00095 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL543_RS00095 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL543_RS00100 PF17042 Nucleotide-binding C-terminal domain AL543_RS00100 PF07005 Sugar-binding N-terminal domain AL543_RS00105 PF00596 Class II Aldolase and Adducin N-terminal domain AL543_RS00110 PF01261 Xylose isomerase-like TIM barrel AL543_RS00115 PF01370 NAD dependent epimerase/dehydratase family AL543_RS00120 PF02447 GntP family permease AL543_RS00225 PF00145 C-5 cytosine-specific DNA methylase AL543_RS00270 PF03354 Phage Terminase AL543_RS00285 PF01381 Helix-turn-helix AL543_RS00285 PF00717 Peptidase S24-like AL543_RS00300 PF00589 Phage integrase family AL543_RS00300 PF12167 Arm DNA-binding domain AL543_RS00320 PF08240 Alcohol dehydrogenase GroES-like domain AL543_RS00320 PF00107 Zinc-binding dehydrogenase AL543_RS00325 PF00155 Aminotransferase class I and II AL543_RS00330 PF01053 Cys/Met metabolism PLP-dependent enzyme AL543_RS00335 PF03466 LysR substrate binding domain AL543_RS00335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS00340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_RS00355 PF00563 EAL domain AL543_RS00355 PF01590 GAF domain AL543_RS00355 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS00355 PF00360 Phytochrome region AL543_RS00360 PF01627 Hpt domain AL543_RS00360 PF00672 HAMP domain AL543_RS00360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS00360 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS00360 PF00072 Response regulator receiver domain AL543_RS00360 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL543_RS00375 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL543_RS00375 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL543_RS00380 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL543_RS00385 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL543_RS00385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL543_RS00405 PF02595 Glycerate kinase family AL543_RS00410 PF02447 GntP family permease AL543_RS00415 PF17853 GGDEF-like domain AL543_RS00415 PF05651 Putative sugar diacid recognition AL543_RS00415 PF13556 PucR C-terminal helix-turn-helix domain AL543_RS00420 PF03150 Di-haem cytochrome c peroxidase AL543_RS00420 PF00034 Cytochrome c AL543_RS00425 PF00672 HAMP domain AL543_RS00425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS00430 PF01243 Pyridoxamine 5'-phosphate oxidase AL543_RS00435 PF06228 Haem utilisation ChuX/HutX AL543_RS00440 PF04055 Radical SAM superfamily AL543_RS00445 PF03544 Gram-negative bacterial TonB protein C-terminal AL543_RS00450 PF01618 MotA/TolQ/ExbB proton channel family AL543_RS00455 PF02472 Biopolymer transport protein ExbD/TolR AL543_RS00460 PF01497 Periplasmic binding protein AL543_RS00465 PF01032 FecCD transport family AL543_RS00470 PF00005 ABC transporter AL543_RS00505 PF00672 HAMP domain AL543_RS00505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS00505 PF02743 Cache domain AL543_RS00510 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_RS00510 PF03473 MOSC domain AL543_RS00510 PF03473 MOSC domain AL543_RS00510 PF03476 MOSC N-terminal beta barrel domain AL543_RS00510 PF03476 MOSC N-terminal beta barrel domain AL543_RS00510 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_RS00515 PF01979 Amidohydrolase family AL543_RS00525 PF13358 DDE superfamily endonuclease AL543_RS00535 PF05656 Protein of unknown function (DUF805) AL543_RS00545 PF05958 tRNA (Uracil-5-)-methyltransferase AL543_RS00550 PF05661 Protein of unknown function (DUF808) AL543_RS00555 PF12848 ABC transporter AL543_RS00555 PF00005 ABC transporter AL543_RS00570 PF00313 'Cold-shock' DNA-binding domain AL543_RS00600 PF08448 PAS fold AL543_RS00600 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS00605 PF00455 DeoR C terminal sensor domain AL543_RS00605 PF08220 DeoR-like helix-turn-helix domain AL543_RS00615 PF02872 5'-nucleotidase, C-terminal domain AL543_RS00615 PF00149 Calcineurin-like phosphoesterase AL543_RS00630 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS00635 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS00635 PF14785 Maltose transport system permease protein MalF P2 domain AL543_RS00640 PF01547 Bacterial extracellular solute-binding protein AL543_RS00645 PF00005 ABC transporter AL543_RS00645 PF08402 TOBE domain AL543_RS00650 PF13302 Acetyltransferase (GNAT) domain AL543_RS00665 PF01906 Putative heavy-metal-binding AL543_RS00670 PF00196 Bacterial regulatory proteins, luxR family AL543_RS00700 PF01584 CheW-like domain AL543_RS00700 PF00072 Response regulator receiver domain AL543_RS00705 PF01047 MarR family AL543_RS00710 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS00725 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS00725 PF00563 EAL domain AL543_RS00725 PF03707 Bacterial signalling protein N terminal repeat AL543_RS00745 PF03466 LysR substrate binding domain AL543_RS00745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS00750 PF00563 EAL domain AL543_RS00750 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS00760 PF05726 Pirin C-terminal cupin domain AL543_RS00760 PF02678 Pirin AL543_RS00765 PF06865 Pyrimidine/purine nucleoside phosphorylase AL543_RS00775 PF07690 Major Facilitator Superfamily AL543_RS00780 PF12729 Four helix bundle sensory module for signal transduction AL543_RS00780 PF00672 HAMP domain AL543_RS00780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS00785 PF13654 AAA domain AL543_RS00785 PF05362 Lon protease (S16) C-terminal proteolytic domain AL543_RS00795 PF00005 ABC transporter AL543_RS00795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_RS00800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS00800 PF03466 LysR substrate binding domain AL543_RS00805 PF02652 L-lactate permease AL543_RS00810 PF01070 FMN-dependent dehydrogenase AL543_RS00820 PF13006 Insertion element 4 transposase N-terminal AL543_RS00820 PF01609 Transposase DDE domain AL543_RS00825 PF03618 Kinase/pyrophosphorylase AL543_RS00830 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL543_RS00830 PF00391 PEP-utilising enzyme, mobile domain AL543_RS00830 PF02896 PEP-utilising enzyme, TIM barrel domain AL543_RS00840 PF13581 Histidine kinase-like ATPase domain AL543_RS00855 PF01470 Pyroglutamyl peptidase AL543_RS00860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS00860 PF08447 PAS fold AL543_RS00865 PF01554 MatE AL543_RS00870 PF01797 Transposase IS200 like AL543_RS00875 PF00793 DAHP synthetase I family AL543_RS00880 PF00005 ABC transporter AL543_RS00885 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS00890 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_RS00895 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS00900 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL543_RS00900 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL543_RS00900 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL543_RS00900 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL543_RS00910 PF04225 Opacity-associated protein A LysM-like domain AL543_RS00910 PF01551 Peptidase family M23 AL543_RS00915 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL543_RS00915 PF02378 Phosphotransferase system, EIIC AL543_RS00915 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL543_RS00920 PF08125 Mannitol dehydrogenase C-terminal domain AL543_RS00920 PF01232 Mannitol dehydrogenase Rossmann domain AL543_RS00925 PF05068 Mannitol repressor AL543_RS00930 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL543_RS00960 PF00892 EamA-like transporter family AL543_RS00975 PF03466 LysR substrate binding domain AL543_RS00975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS00980 PF03358 NADPH-dependent FMN reductase AL543_RS00990 PF02801 Beta-ketoacyl synthase, C-terminal domain AL543_RS00990 PF00698 Acyl transferase domain AL543_RS00990 PF08659 KR domain AL543_RS00990 PF00109 Beta-ketoacyl synthase, N-terminal domain AL543_RS00990 PF08240 Alcohol dehydrogenase GroES-like domain AL543_RS00990 PF00550 Phosphopantetheine attachment site AL543_RS00990 PF08990 Erythronolide synthase docking AL543_RS00990 PF16197 Ketoacyl-synthetase C-terminal extension AL543_RS00990 PF14765 Polyketide synthase dehydratase AL543_RS00995 PF00892 EamA-like transporter family AL543_RS01000 PF13460 NAD(P)H-binding AL543_RS01005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS01005 PF03466 LysR substrate binding domain AL543_RS01015 PF13358 DDE superfamily endonuclease AL543_RS01020 PF00106 short chain dehydrogenase AL543_RS01025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS01025 PF03466 LysR substrate binding domain AL543_RS01030 PF00579 tRNA synthetases class I (W and Y) AL543_RS01035 PF04013 Putative SAM-dependent RNA methyltransferase AL543_RS01045 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL543_RS01055 PF13520 Amino acid permease AL543_RS01060 PF01276 Orn/Lys/Arg decarboxylase, major domain AL543_RS01060 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL543_RS01060 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL543_RS01065 PF10940 Protein of unknown function (DUF2618) AL543_RS01080 PF03472 Autoinducer binding domain AL543_RS01080 PF00196 Bacterial regulatory proteins, luxR family AL543_RS01100 PF00171 Aldehyde dehydrogenase family AL543_RS01105 PF01037 Lrp/AsnC ligand binding domain AL543_RS01110 PF02743 Cache domain AL543_RS01110 PF00672 HAMP domain AL543_RS01110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS01120 PF00474 Sodium:solute symporter family AL543_RS01130 PF14850 DNA-binding domain of Proline dehydrogenase AL543_RS01130 PF01619 Proline dehydrogenase AL543_RS01130 PF00171 Aldehyde dehydrogenase family AL543_RS01130 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL543_RS01135 PF12833 Helix-turn-helix domain AL543_RS01145 PF03781 Sulfatase-modifying factor enzyme 1 AL543_RS01150 PF00072 Response regulator receiver domain AL543_RS01150 PF00196 Bacterial regulatory proteins, luxR family AL543_RS01155 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL543_RS01155 PF01243 Pyridoxamine 5'-phosphate oxidase AL543_RS01160 PF00529 HlyD membrane-fusion protein of T1SS AL543_RS01175 PF03412 Peptidase C39 family AL543_RS01175 PF00005 ABC transporter AL543_RS01175 PF00664 ABC transporter transmembrane region AL543_RS01190 PF07971 Glycosyl hydrolase family 92 AL543_RS01190 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL543_RS01200 PF00072 Response regulator receiver domain AL543_RS01200 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS01210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS01210 PF00672 HAMP domain AL543_RS01210 PF02743 Cache domain AL543_RS01215 PF00072 Response regulator receiver domain AL543_RS01215 PF01339 CheB methylesterase AL543_RS01220 PF03975 CheD chemotactic sensory transduction AL543_RS01225 PF03705 CheR methyltransferase, all-alpha domain AL543_RS01225 PF01739 CheR methyltransferase, SAM binding domain AL543_RS01230 PF00672 HAMP domain AL543_RS01230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS01230 PF02203 Tar ligand binding domain homologue AL543_RS01235 PF01584 CheW-like domain AL543_RS01240 PF01584 CheW-like domain AL543_RS01245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS01245 PF02895 Signal transducing histidine kinase, homodimeric domain AL543_RS01245 PF01627 Hpt domain AL543_RS01245 PF09078 CheY binding AL543_RS01245 PF01584 CheW-like domain AL543_RS01250 PF00072 Response regulator receiver domain AL543_RS01260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_RS01265 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS01270 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS01270 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_RS01275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_RS01275 PF00005 ABC transporter AL543_RS01280 PF00884 Sulfatase AL543_RS01280 PF08019 Phosphoethanolamine transferase EptA/EptB AL543_RS01285 PF01797 Transposase IS200 like AL543_RS01290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS01290 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS01290 PF08521 Two-component sensor kinase N-terminal AL543_RS01295 PF00072 Response regulator receiver domain AL543_RS01295 PF00486 Transcriptional regulatory protein, C terminal AL543_RS01305 PF00106 short chain dehydrogenase AL543_RS01315 PF00501 AMP-binding enzyme AL543_RS01325 PF13718 GNAT acetyltransferase 2 AL543_RS01325 PF05127 Helicase AL543_RS01330 PF13416 Bacterial extracellular solute-binding protein AL543_RS01335 PF08775 ParB family AL543_RS01335 PF02195 ParB-like nuclease domain AL543_RS01340 PF18607 ParA helix turn helix domain AL543_RS01340 PF13614 AAA domain AL543_RS01370 PF01709 Transcriptional regulator AL543_RS01375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL543_RS01375 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL543_RS01385 PF10928 Protein of unknown function (DUF2810) AL543_RS01390 PF00196 Bacterial regulatory proteins, luxR family AL543_RS01390 PF17874 MalT-like TPR region AL543_RS01395 PF00343 Carbohydrate phosphorylase AL543_RS01400 PF02446 4-alpha-glucanotransferase AL543_RS01405 PF02806 Alpha amylase, C-terminal all-beta domain AL543_RS01405 PF00128 Alpha amylase, catalytic domain AL543_RS01405 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL543_RS01410 PF05638 Type VI secretion system effector, Hcp AL543_RS01415 PF04717 Type VI secretion system, phage-baseplate injector AL543_RS01440 PF00842 Alanine racemase, C-terminal domain AL543_RS01440 PF01168 Alanine racemase, N-terminal domain AL543_RS01440 PF01757 Acyltransferase family AL543_RS01450 PF00939 Sodium:sulfate symporter transmembrane region AL543_RS01455 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL543_RS01460 PF08329 Chitinase A, N-terminal domain AL543_RS01460 PF00704 Glycosyl hydrolases family 18 AL543_RS01485 PF01569 PAP2 superfamily AL543_RS01490 PF02225 PA domain AL543_RS01490 PF04389 Peptidase family M28 AL543_RS01495 PF00375 Sodium:dicarboxylate symporter family AL543_RS01500 PF04314 Copper chaperone PCu(A)C AL543_RS01505 PF02630 SCO1/SenC AL543_RS01525 PF03616 Sodium/glutamate symporter AL543_RS01530 PF12945 Flagellar protein YcgR AL543_RS01530 PF07238 PilZ domain AL543_RS01540 PF13443 Cro/C1-type HTH DNA-binding domain AL543_RS01555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL543_RS01555 PF00529 HlyD membrane-fusion protein of T1SS AL543_RS01560 PF11742 Protein of unknown function (DUF3302) AL543_RS01565 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS01580 PF01048 Phosphorylase superfamily AL543_RS01590 PF08349 Protein of unknown function (DUF1722) AL543_RS01595 PF13411 MerR HTH family regulatory protein AL543_RS01600 PF03441 FAD binding domain of DNA photolyase AL543_RS01600 PF00875 DNA photolyase AL543_RS01605 PF01476 LysM domain AL543_RS01605 PF17969 L,D-transpeptidase C-terminal domain AL543_RS01605 PF03734 L,D-transpeptidase catalytic domain AL543_RS01615 PF00271 Helicase conserved C-terminal domain AL543_RS01615 PF00270 DEAD/DEAH box helicase AL543_RS01620 PF00672 HAMP domain AL543_RS01620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS01620 PF12729 Four helix bundle sensory module for signal transduction AL543_RS01625 PF12849 PBP superfamily domain AL543_RS01630 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS01635 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS01640 PF00005 ABC transporter AL543_RS01645 PF00563 EAL domain AL543_RS01645 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS01645 PF03707 Bacterial signalling protein N terminal repeat AL543_RS01655 PF07670 Nucleoside recognition AL543_RS01660 PF01740 STAS domain AL543_RS01660 PF00916 Sulfate permease family AL543_RS01670 PF01551 Peptidase family M23 AL543_RS01670 PF08525 Opacity-associated protein A N-terminal motif AL543_RS01670 PF01476 LysM domain AL543_RS01675 PF03707 Bacterial signalling protein N terminal repeat AL543_RS01675 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS01675 PF00563 EAL domain AL543_RS01680 PF03466 LysR substrate binding domain AL543_RS01680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS01685 PF07690 Major Facilitator Superfamily AL543_RS01690 PF00376 MerR family regulatory protein AL543_RS01690 PF09278 MerR, DNA binding AL543_RS01695 PF13358 DDE superfamily endonuclease AL543_RS01715 PF17848 Acetyl-coA carboxylase zinc finger domain AL543_RS01715 PF01039 Carboxyl transferase domain AL543_RS01730 PF00462 Glutaredoxin AL543_RS01730 PF08534 Redoxin AL543_RS01735 PF00892 EamA-like transporter family AL543_RS01740 PF13609 Gram-negative porin AL543_RS01745 PF02566 OsmC-like protein AL543_RS01750 PF01047 MarR family AL543_RS01755 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL543_RS01770 PF12833 Helix-turn-helix domain AL543_RS01775 PF01810 LysE type translocator AL543_RS01785 PF00005 ABC transporter AL543_RS01785 PF00664 ABC transporter transmembrane region AL543_RS01795 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL543_RS01805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS01805 PF03466 LysR substrate binding domain AL543_RS01810 PF10688 Bacterial inner membrane protein AL543_RS01815 PF01081 KDPG and KHG aldolase AL543_RS01820 PF00294 pfkB family carbohydrate kinase AL543_RS01825 PF02614 Glucuronate isomerase AL543_RS01830 PF08125 Mannitol dehydrogenase C-terminal domain AL543_RS01830 PF01232 Mannitol dehydrogenase Rossmann domain AL543_RS01835 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL543_RS01840 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL543_RS01845 PF03480 Bacterial extracellular solute-binding protein, family 7 AL543_RS01850 PF00392 Bacterial regulatory proteins, gntR family AL543_RS01850 PF07729 FCD domain AL543_RS01855 PF03786 D-mannonate dehydratase (UxuA) AL543_RS01860 PF00271 Helicase conserved C-terminal domain AL543_RS01860 PF00270 DEAD/DEAH box helicase AL543_RS01875 PF12833 Helix-turn-helix domain AL543_RS01875 PF12852 Cupin AL543_RS01880 PF00462 Glutaredoxin AL543_RS01895 PF00672 HAMP domain AL543_RS01895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS01905 PF01797 Transposase IS200 like AL543_RS01910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS01910 PF00672 HAMP domain AL543_RS01920 PF01566 Natural resistance-associated macrophage protein AL543_RS01925 PF00128 Alpha amylase, catalytic domain AL543_RS01925 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL543_RS01930 PF02264 LamB porin AL543_RS01935 PF07148 Maltose operon periplasmic protein precursor (MalM) AL543_RS01945 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL543_RS01965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS01965 PF03466 LysR substrate binding domain AL543_RS01970 PF07681 DoxX AL543_RS01975 PF00730 HhH-GPD superfamily base excision DNA repair protein AL543_RS01975 PF06029 AlkA N-terminal domain AL543_RS01980 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL543_RS01980 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL543_RS01990 PF00939 Sodium:sulfate symporter transmembrane region AL543_RS01995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS01995 PF17203 Single cache domain 3 AL543_RS02000 PF00072 Response regulator receiver domain AL543_RS02000 PF12431 Transcriptional regulator AL543_RS02005 PF03600 Citrate transporter AL543_RS02010 PF07670 Nucleoside recognition AL543_RS02015 PF07670 Nucleoside recognition AL543_RS02020 PF00375 Sodium:dicarboxylate symporter family AL543_RS02035 PF02001 Protein of unknown function DUF134 AL543_RS02055 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL543_RS02055 PF01447 Thermolysin metallopeptidase, catalytic domain AL543_RS02055 PF07504 Fungalysin/Thermolysin Propeptide Motif AL543_RS02055 PF01483 Proprotein convertase P-domain AL543_RS02065 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL543_RS02065 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL543_RS02070 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL543_RS02070 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL543_RS02075 PF00581 Rhodanese-like domain AL543_RS02080 PF00563 EAL domain AL543_RS02080 PF12792 CSS motif domain associated with EAL AL543_RS02085 PF13419 Haloacid dehalogenase-like hydrolase AL543_RS02090 PF01740 STAS domain AL543_RS02090 PF00916 Sulfate permease family AL543_RS02095 PF01797 Transposase IS200 like AL543_RS02100 PF00849 RNA pseudouridylate synthase AL543_RS02120 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AL543_RS02130 PF05947 Type VI secretion system, TssF AL543_RS02150 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AL543_RS02160 PF17871 AAA lid domain AL543_RS02160 PF00004 ATPase family associated with various cellular activities (AAA) AL543_RS02160 PF07724 AAA domain (Cdc48 subfamily) AL543_RS02160 PF10431 C-terminal, D2-small domain, of ClpB protein AL543_RS02165 PF00158 Sigma-54 interaction domain AL543_RS02165 PF02954 Bacterial regulatory protein, Fis family AL543_RS02180 PF06744 Type VI secretion protein IcmF C-terminal AL543_RS02180 PF14331 ImcF-related N-terminal domain AL543_RS02180 PF06761 Intracellular multiplication and human macrophage-killing AL543_RS02190 PF01471 Putative peptidoglycan binding domain AL543_RS02190 PF04717 Type VI secretion system, phage-baseplate injector AL543_RS02200 PF13358 DDE superfamily endonuclease AL543_RS02215 PF05025 RbsD / FucU transport protein family AL543_RS02220 PF00005 ABC transporter AL543_RS02225 PF02653 Branched-chain amino acid transport system / permease component AL543_RS02230 PF13407 Periplasmic binding protein domain AL543_RS02235 PF00294 pfkB family carbohydrate kinase AL543_RS02240 PF00356 Bacterial regulatory proteins, lacI family AL543_RS02245 PF04973 Nicotinamide mononucleotide transporter AL543_RS02250 PF01048 Phosphorylase superfamily AL543_RS02260 PF03009 Glycerophosphoryl diester phosphodiesterase family AL543_RS02265 PF07690 Major Facilitator Superfamily AL543_RS02280 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS02280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS02280 PF02743 Cache domain AL543_RS02285 PF00158 Sigma-54 interaction domain AL543_RS02285 PF00072 Response regulator receiver domain AL543_RS02285 PF02954 Bacterial regulatory protein, Fis family AL543_RS02310 PF01266 FAD dependent oxidoreductase AL543_RS02315 PF00041 Fibronectin type III domain AL543_RS02315 PF12561 ToxR activated gene A lipoprotein domain AL543_RS02320 PF01327 Polypeptide deformylase AL543_RS02325 PF03611 PTS system sugar-specific permease component AL543_RS02335 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL543_RS02340 PF00356 Bacterial regulatory proteins, lacI family AL543_RS02345 PF00970 Oxidoreductase FAD-binding domain AL543_RS02345 PF00175 Oxidoreductase NAD-binding domain AL543_RS02345 PF00042 Globin AL543_RS02355 PF03222 Tryptophan/tyrosine permease family AL543_RS02360 PF01212 Beta-eliminating lyase AL543_RS02375 PF12843 Putative quorum-sensing-regulated virulence factor AL543_RS02385 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS02385 PF08448 PAS fold AL543_RS02385 PF00563 EAL domain AL543_RS02390 PF00313 'Cold-shock' DNA-binding domain AL543_RS02420 PF13519 von Willebrand factor type A domain AL543_RS02435 PF01882 Protein of unknown function DUF58 AL543_RS02440 PF07726 ATPase family associated with various cellular activities (AAA) AL543_RS02440 PF17863 AAA lid domain AL543_RS02460 PF01773 Na+ dependent nucleoside transporter N-terminus AL543_RS02460 PF07662 Na+ dependent nucleoside transporter C-terminus AL543_RS02460 PF07670 Nucleoside recognition AL543_RS02465 PF01546 Peptidase family M20/M25/M40 AL543_RS02465 PF07687 Peptidase dimerisation domain AL543_RS02475 PF00158 Sigma-54 interaction domain AL543_RS02475 PF01590 GAF domain AL543_RS02480 PF00175 Oxidoreductase NAD-binding domain AL543_RS02480 PF00970 Oxidoreductase FAD-binding domain AL543_RS02480 PF00042 Globin AL543_RS02485 PF00313 'Cold-shock' DNA-binding domain AL543_RS02490 PF03889 Alternative ribosome-rescue factor A AL543_RS02505 PF00072 Response regulator receiver domain AL543_RS02515 PF01256 Carbohydrate kinase AL543_RS02515 PF03853 YjeF-related protein N-terminus AL543_RS02520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL543_RS02520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL543_RS02530 PF07885 Ion channel AL543_RS02540 PF00478 IMP dehydrogenase / GMP reductase domain AL543_RS02545 PF00589 Phage integrase family AL543_RS02545 PF02899 Phage integrase, N-terminal SAM-like domain AL543_RS02550 PF07669 Eco57I restriction-modification methylase AL543_RS02615 PF05840 Bacteriophage replication gene A protein (GPA) AL543_RS02780 PF00271 Helicase conserved C-terminal domain AL543_RS02780 PF00270 DEAD/DEAH box helicase AL543_RS02785 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL543_RS02790 PF02540 NAD synthase AL543_RS02795 PF01467 Cytidylyltransferase-like AL543_RS02800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS02800 PF17200 Single Cache domain 2 AL543_RS02800 PF00672 HAMP domain AL543_RS02805 PF11849 Domain of unknown function (DUF3369) AL543_RS02810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS02810 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS02810 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_RS02820 PF03553 Na+/H+ antiporter family AL543_RS02825 PF07690 Major Facilitator Superfamily AL543_RS02835 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS02835 PF08448 PAS fold AL543_RS02840 PF00657 GDSL-like Lipase/Acylhydrolase AL543_RS02845 PF07968 Leukocidin/Hemolysin toxin family AL543_RS02845 PF12563 Hemolytic toxin N terminal AL543_RS02845 PF16458 Beta-prism lectin AL543_RS02850 PF12729 Four helix bundle sensory module for signal transduction AL543_RS02850 PF00672 HAMP domain AL543_RS02850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS02855 PF05547 Immune inhibitor A peptidase M6 AL543_RS02855 PF00801 PKD domain AL543_RS02875 PF01032 FecCD transport family AL543_RS02880 PF01032 FecCD transport family AL543_RS02885 PF00005 ABC transporter AL543_RS02890 PF12833 Helix-turn-helix domain AL543_RS02895 PF07715 TonB-dependent Receptor Plug Domain AL543_RS02895 PF00593 TonB dependent receptor AL543_RS02905 PF00871 Acetokinase family AL543_RS02920 PF01380 SIS domain AL543_RS02925 PF00367 phosphotransferase system, EIIB AL543_RS02925 PF02378 Phosphotransferase system, EIIC AL543_RS02930 PF01380 SIS domain AL543_RS02930 PF01418 Helix-turn-helix domain, rpiR family AL543_RS02935 PF02656 Domain of unknown function (DUF202) AL543_RS02950 PF01261 Xylose isomerase-like TIM barrel AL543_RS02955 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL543_RS02965 PF00596 Class II Aldolase and Adducin N-terminal domain AL543_RS02970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL543_RS02975 PF03611 PTS system sugar-specific permease component AL543_RS02980 PF00455 DeoR C terminal sensor domain AL543_RS02980 PF08220 DeoR-like helix-turn-helix domain AL543_RS02995 PF13358 DDE superfamily endonuclease AL543_RS03010 PF13358 DDE superfamily endonuclease AL543_RS03015 PF05025 RbsD / FucU transport protein family AL543_RS03020 PF00596 Class II Aldolase and Adducin N-terminal domain AL543_RS03035 PF02653 Branched-chain amino acid transport system / permease component AL543_RS03050 PF00873 AcrB/AcrD/AcrF family AL543_RS03080 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL543_RS03080 PF18416 N-acetylglucosamine binding protein domain 2 AL543_RS03085 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AL543_RS03090 PF01575 MaoC like domain AL543_RS03095 PF12849 PBP superfamily domain AL543_RS03105 PF00773 RNB domain AL543_RS03105 PF00575 S1 RNA binding domain AL543_RS03105 PF08206 Ribonuclease B OB domain AL543_RS03110 PF00270 DEAD/DEAH box helicase AL543_RS03110 PF00271 Helicase conserved C-terminal domain AL543_RS03110 PF03880 DbpA RNA binding domain AL543_RS03120 PF00884 Sulfatase AL543_RS03125 PF00294 pfkB family carbohydrate kinase AL543_RS03140 PF13419 Haloacid dehalogenase-like hydrolase AL543_RS03160 PF01556 DnaJ C terminal domain AL543_RS03160 PF00684 DnaJ central domain AL543_RS03160 PF00226 DnaJ domain AL543_RS03170 PF00498 FHA domain AL543_RS03170 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS03170 PF00563 EAL domain AL543_RS03175 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL543_RS03175 PF07055 Enoyl reductase FAD binding domain AL543_RS03175 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL543_RS03180 PF13472 GDSL-like Lipase/Acylhydrolase family AL543_RS03185 PF00005 ABC transporter AL543_RS03195 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL543_RS03195 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL543_RS03205 PF02626 Carboxyltransferase domain, subdomain A and B AL543_RS03210 PF02682 Carboxyltransferase domain, subdomain C and D AL543_RS03215 PF03746 LamB/YcsF family AL543_RS03220 PF16363 GDP-mannose 4,6 dehydratase AL543_RS03230 PF03222 Tryptophan/tyrosine permease family AL543_RS03240 PF04336 Acyl carrier protein phosphodiesterase AL543_RS03245 PF00271 Helicase conserved C-terminal domain AL543_RS03245 PF00270 DEAD/DEAH box helicase AL543_RS03255 PF00034 Cytochrome c AL543_RS03260 PF01212 Beta-eliminating lyase AL543_RS03265 PF00293 NUDIX domain AL543_RS03270 PF07728 AAA domain (dynein-related subfamily) AL543_RS03270 PF12592 Protein of unknown function (DUF3763) AL543_RS03270 PF17868 AAA lid domain AL543_RS03275 PF05762 VWA domain containing CoxE-like protein AL543_RS03285 PF00005 ABC transporter AL543_RS03290 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_RS03295 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS03300 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS03305 PF02634 FdhD/NarQ family AL543_RS03310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS03310 PF03466 LysR substrate binding domain AL543_RS03315 PF13358 DDE superfamily endonuclease AL543_RS03325 PF00384 Molybdopterin oxidoreductase AL543_RS03345 PF11756 Nitrous oxide-stimulated promoter AL543_RS03350 PF07690 Major Facilitator Superfamily AL543_RS03355 PF00085 Thioredoxin AL543_RS03360 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL543_RS03360 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL543_RS03370 PF00535 Glycosyl transferase family 2 AL543_RS03380 PF02754 Cysteine-rich domain AL543_RS03380 PF13183 4Fe-4S dicluster domain AL543_RS03385 PF00890 FAD binding domain AL543_RS03390 PF04324 BFD-like [2Fe-2S] binding domain AL543_RS03390 PF01266 FAD dependent oxidoreductase AL543_RS03400 PF00230 Major intrinsic protein AL543_RS03405 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL543_RS03405 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL543_RS03415 PF04363 Protein of unknown function (DUF496) AL543_RS03425 PF04337 Protein of unknown function, DUF480 AL543_RS03430 PF13358 DDE superfamily endonuclease AL543_RS03435 PF01541 GIY-YIG catalytic domain AL543_RS03445 PF13407 Periplasmic binding protein domain AL543_RS03450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS03450 PF09308 LuxQ, periplasmic AL543_RS03450 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS03450 PF00072 Response regulator receiver domain AL543_RS03470 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL543_RS03470 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL543_RS03480 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS03485 PF03459 TOBE domain AL543_RS03485 PF00005 ABC transporter AL543_RS03505 PF12805 FUSC-like inner membrane protein yccS AL543_RS03510 PF13361 UvrD-like helicase C-terminal domain AL543_RS03510 PF12462 DNA helicase IV / RNA helicase N terminal AL543_RS03510 PF00580 UvrD/REP helicase N-terminal domain AL543_RS03515 PF03413 Peptidase propeptide and YPEB domain AL543_RS03515 PF01447 Thermolysin metallopeptidase, catalytic domain AL543_RS03515 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL543_RS03515 PF07504 Fungalysin/Thermolysin Propeptide Motif AL543_RS03535 PF01219 Prokaryotic diacylglycerol kinase AL543_RS03540 PF13358 DDE superfamily endonuclease AL543_RS03550 PF00857 Isochorismatase family AL543_RS03555 PF02142 MGS-like domain AL543_RS03560 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL543_RS03565 PF01627 Hpt domain AL543_RS03565 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS03565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS03565 PF00672 HAMP domain AL543_RS03565 PF00072 Response regulator receiver domain AL543_RS03570 PF00224 Pyruvate kinase, barrel domain AL543_RS03570 PF02887 Pyruvate kinase, alpha/beta domain AL543_RS03575 PF07690 Major Facilitator Superfamily AL543_RS03590 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS03590 PF02743 Cache domain AL543_RS03590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS03595 PF02954 Bacterial regulatory protein, Fis family AL543_RS03595 PF00072 Response regulator receiver domain AL543_RS03595 PF14532 Sigma-54 interaction domain AL543_RS03610 PF00704 Glycosyl hydrolases family 18 AL543_RS03610 PF06483 Chitinase C AL543_RS03615 PF00483 Nucleotidyl transferase AL543_RS03620 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS03635 PF07549 SecD/SecF GG Motif AL543_RS03635 PF13721 SecD export protein N-terminal TM region AL543_RS03635 PF02355 Protein export membrane protein AL543_RS03640 PF07549 SecD/SecF GG Motif AL543_RS03640 PF02355 Protein export membrane protein AL543_RS03645 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL543_RS03650 PF02378 Phosphotransferase system, EIIC AL543_RS03655 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL543_RS03665 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL543_RS03665 PF03173 Putative carbohydrate binding domain AL543_RS03665 PF00728 Glycosyl hydrolase family 20, catalytic domain AL543_RS03665 PF02838 Glycosyl hydrolase family 20, domain 2 AL543_RS03670 PF00106 short chain dehydrogenase AL543_RS03675 PF02803 Thiolase, C-terminal domain AL543_RS03675 PF00108 Thiolase, N-terminal domain AL543_RS03685 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL543_RS03695 PF03466 LysR substrate binding domain AL543_RS03695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS03715 PF00263 Bacterial type II and III secretion system protein AL543_RS03715 PF04972 BON domain AL543_RS03715 PF13629 Pilus formation protein N terminal region AL543_RS03730 PF00437 Type II/IV secretion system protein AL543_RS03770 PF00005 ABC transporter AL543_RS03770 PF08402 TOBE domain AL543_RS03775 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS03785 PF07690 Major Facilitator Superfamily AL543_RS03790 PF07730 Histidine kinase AL543_RS03790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS03790 PF05231 MASE1 AL543_RS03795 PF00196 Bacterial regulatory proteins, luxR family AL543_RS03795 PF00072 Response regulator receiver domain AL543_RS03800 PF01966 HD domain AL543_RS03810 PF03264 NapC/NirT cytochrome c family, N-terminal region AL543_RS03815 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL543_RS03820 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL543_RS03820 PF00384 Molybdopterin oxidoreductase AL543_RS03820 PF01568 Molydopterin dinucleotide binding domain AL543_RS03830 PF12800 4Fe-4S binding domain AL543_RS03830 PF00037 4Fe-4S binding domain AL543_RS03830 PF13187 4Fe-4S dicluster domain AL543_RS03835 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL543_RS03835 PF07730 Histidine kinase AL543_RS03835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS03835 PF00672 HAMP domain AL543_RS03840 PF00072 Response regulator receiver domain AL543_RS03840 PF00196 Bacterial regulatory proteins, luxR family AL543_RS03845 PF03313 Serine dehydratase alpha chain AL543_RS03845 PF03315 Serine dehydratase beta chain AL543_RS03850 PF03606 C4-dicarboxylate anaerobic carrier AL543_RS03855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS03855 PF12729 Four helix bundle sensory module for signal transduction AL543_RS03855 PF00672 HAMP domain AL543_RS03860 PF13419 Haloacid dehalogenase-like hydrolase AL543_RS03865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL543_RS03865 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL543_RS03870 PF00691 OmpA family AL543_RS03875 PF17200 Single Cache domain 2 AL543_RS03875 PF00672 HAMP domain AL543_RS03875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS03880 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL543_RS03880 PF01266 FAD dependent oxidoreductase AL543_RS03935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL543_RS03935 PF00529 HlyD membrane-fusion protein of T1SS AL543_RS03940 PF03466 LysR substrate binding domain AL543_RS03940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS03945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL543_RS03945 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_RS03960 PF04143 Sulphur transport AL543_RS03975 PF00873 AcrB/AcrD/AcrF family AL543_RS03980 PF01797 Transposase IS200 like AL543_RS03985 PF00881 Nitroreductase family AL543_RS03995 PF03466 LysR substrate binding domain AL543_RS03995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS04005 PF06942 GlpM protein AL543_RS04030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL543_RS04030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL543_RS04060 PF00456 Transketolase, thiamine diphosphate binding domain AL543_RS04060 PF02780 Transketolase, C-terminal domain AL543_RS04060 PF02779 Transketolase, pyrimidine binding domain AL543_RS04065 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL543_RS04070 PF04198 Putative sugar-binding domain AL543_RS04075 PF08329 Chitinase A, N-terminal domain AL543_RS04075 PF00704 Glycosyl hydrolases family 18 AL543_RS04080 PF00581 Rhodanese-like domain AL543_RS04090 PF00899 ThiF family AL543_RS04095 PF03454 MoeA C-terminal region (domain IV) AL543_RS04095 PF00994 Probable molybdopterin binding domain AL543_RS04095 PF03453 MoeA N-terminal region (domain I and II) AL543_RS04100 PF01227 GTP cyclohydrolase I AL543_RS04105 PF01641 SelR domain AL543_RS04105 PF01625 Peptide methionine sulfoxide reductase AL543_RS04110 PF01268 Formate--tetrahydrofolate ligase AL543_RS04115 PF01741 Large-conductance mechanosensitive channel, MscL AL543_RS04120 PF00465 Iron-containing alcohol dehydrogenase AL543_RS04135 PF13419 Haloacid dehalogenase-like hydrolase AL543_RS04140 PF14760 Rnk N-terminus AL543_RS04140 PF01272 Transcription elongation factor, GreA/GreB, C-term AL543_RS04145 PF13419 Haloacid dehalogenase-like hydrolase AL543_RS04150 PF00202 Aminotransferase class-III AL543_RS04155 PF00266 Aminotransferase class-V AL543_RS04165 PF00005 ABC transporter AL543_RS04170 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS04175 PF07702 UTRA domain AL543_RS04175 PF00392 Bacterial regulatory proteins, gntR family AL543_RS04185 PF00854 POT family AL543_RS04210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_RS04215 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS04220 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_RS04220 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS04225 PF00005 ABC transporter AL543_RS04225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_RS04235 PF03479 Plants and Prokaryotes Conserved (PCC) domain AL543_RS04235 PF12804 MobA-like NTP transferase domain AL543_RS04235 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_RS04250 PF02798 Glutathione S-transferase, N-terminal domain AL543_RS04250 PF00043 Glutathione S-transferase, C-terminal domain AL543_RS04270 PF03061 Thioesterase superfamily AL543_RS04280 PF12793 Sugar transport-related sRNA regulator N-term AL543_RS04280 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_RS04290 PF03466 LysR substrate binding domain AL543_RS04290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS04295 PF13380 CoA binding domain AL543_RS04295 PF13607 Succinyl-CoA ligase like flavodoxin domain AL543_RS04295 PF00583 Acetyltransferase (GNAT) family AL543_RS04305 PF01820 D-ala D-ala ligase N-terminus AL543_RS04305 PF07478 D-ala D-ala ligase C-terminus AL543_RS04315 PF01253 Translation initiation factor SUI1 AL543_RS04320 PF01648 4'-phosphopantetheinyl transferase superfamily AL543_RS04320 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AL543_RS04325 PF00664 ABC transporter transmembrane region AL543_RS04325 PF00005 ABC transporter AL543_RS04330 PF00664 ABC transporter transmembrane region AL543_RS04330 PF00005 ABC transporter AL543_RS04335 PF13193 AMP-binding enzyme C-terminal domain AL543_RS04335 PF00501 AMP-binding enzyme AL543_RS04340 PF00425 chorismate binding enzyme AL543_RS04345 PF00975 Thioesterase domain AL543_RS04355 PF00501 AMP-binding enzyme AL543_RS04355 PF13193 AMP-binding enzyme C-terminal domain AL543_RS04355 PF00550 Phosphopantetheine attachment site AL543_RS04355 PF00668 Condensation domain AL543_RS04360 PF00550 Phosphopantetheine attachment site AL543_RS04360 PF08242 Methyltransferase domain AL543_RS04360 PF00501 AMP-binding enzyme AL543_RS04360 PF00668 Condensation domain AL543_RS04365 PF07690 Major Facilitator Superfamily AL543_RS04370 PF07715 TonB-dependent Receptor Plug Domain AL543_RS04370 PF00593 TonB dependent receptor AL543_RS04455 PF03701 Uncharacterised protein family (UPF0181) AL543_RS04470 PF00072 Response regulator receiver domain AL543_RS04470 PF00486 Transcriptional regulatory protein, C terminal AL543_RS04480 PF02233 NAD(P) transhydrogenase beta subunit AL543_RS04485 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL543_RS04485 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL543_RS04485 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL543_RS04500 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS04500 PF00072 Response regulator receiver domain AL543_RS04520 PF17158 Membrane-associated sensor, integral membrane domain AL543_RS04520 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS04555 PF08274 PhnA Zinc-Ribbon AL543_RS04555 PF03831 PhnA domain AL543_RS04565 PF03741 Integral membrane protein TerC family AL543_RS04570 PF02872 5'-nucleotidase, C-terminal domain AL543_RS04570 PF00149 Calcineurin-like phosphoesterase AL543_RS04575 PF11398 Protein of unknown function (DUF2813) AL543_RS04580 PF06496 Protein of unknown function (DUF1097) AL543_RS04585 PF03466 LysR substrate binding domain AL543_RS04585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS04590 PF01226 Formate/nitrite transporter AL543_RS04595 PF04264 YceI-like domain AL543_RS04600 PF01292 Prokaryotic cytochrome b561 AL543_RS04610 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS04610 PF03707 Bacterial signalling protein N terminal repeat AL543_RS04610 PF00563 EAL domain AL543_RS04615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS04615 PF00672 HAMP domain AL543_RS04615 PF02743 Cache domain AL543_RS04620 PF00672 HAMP domain AL543_RS04620 PF02743 Cache domain AL543_RS04620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS04635 PF07646 Kelch motif AL543_RS04640 PF01344 Kelch motif AL543_RS04645 PF01418 Helix-turn-helix domain, rpiR family AL543_RS04645 PF01380 SIS domain AL543_RS04650 PF00701 Dihydrodipicolinate synthetase family AL543_RS04655 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL543_RS04660 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL543_RS04665 PF03480 Bacterial extracellular solute-binding protein, family 7 AL543_RS04675 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AL543_RS04680 PF00480 ROK family AL543_RS04685 PF01979 Amidohydrolase family AL543_RS04690 PF13358 DDE superfamily endonuclease AL543_RS04700 PF13358 DDE superfamily endonuclease AL543_RS04710 PF01926 50S ribosome-binding GTPase AL543_RS04715 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL543_RS04715 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL543_RS04720 PF00654 Voltage gated chloride channel AL543_RS04740 PF00155 Aminotransferase class I and II AL543_RS04745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS04745 PF00072 Response regulator receiver domain AL543_RS04750 PF13476 AAA domain AL543_RS04755 PF12320 Type 5 capsule protein repressor C-terminal domain AL543_RS04755 PF00149 Calcineurin-like phosphoesterase AL543_RS04760 PF00356 Bacterial regulatory proteins, lacI family AL543_RS04760 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL543_RS04765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL543_RS04765 PF00381 PTS HPr component phosphorylation site AL543_RS04770 PF00294 pfkB family carbohydrate kinase AL543_RS04775 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL543_RS04775 PF02378 Phosphotransferase system, EIIC AL543_RS04780 PF12792 CSS motif domain associated with EAL AL543_RS04780 PF00563 EAL domain AL543_RS04785 PF18030 RimK PreATP-grasp domain AL543_RS04785 PF08443 RimK-like ATP-grasp domain AL543_RS04790 PF00155 Aminotransferase class I and II AL543_RS04800 PF03477 ATP cone domain AL543_RS04800 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL543_RS04810 PF02311 AraC-like ligand binding domain AL543_RS04810 PF12833 Helix-turn-helix domain AL543_RS04820 PF13358 DDE superfamily endonuclease AL543_RS04910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_RS04930 PF01699 Sodium/calcium exchanger protein AL543_RS04935 PF04229 GrpB protein AL543_RS04960 PF13302 Acetyltransferase (GNAT) domain AL543_RS05000 PF13358 DDE superfamily endonuclease AL543_RS05030 PF04229 GrpB protein AL543_RS05075 PF02567 Phenazine biosynthesis-like protein AL543_RS05285 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL543_RS05435 PF01906 Putative heavy-metal-binding AL543_RS05480 PF01906 Putative heavy-metal-binding AL543_RS05515 PF13358 DDE superfamily endonuclease AL543_RS05640 PF09905 DNA-binding protein VF530 AL543_RS05655 PF01906 Putative heavy-metal-binding AL543_RS05670 PF01555 DNA methylase AL543_RS05680 PF04229 GrpB protein AL543_RS05730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_RS05760 PF14602 Hexapeptide repeat of succinyl-transferase AL543_RS05760 PF12464 Maltose acetyltransferase AL543_RS05775 PF01381 Helix-turn-helix AL543_RS05780 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB AL543_RS05790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_RS05810 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AL543_RS05815 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL543_RS05830 PF04229 GrpB protein AL543_RS05920 PF13302 Acetyltransferase (GNAT) domain AL543_RS05925 PF02048 Heat-stable enterotoxin ST AL543_RS05955 PF13302 Acetyltransferase (GNAT) domain AL543_RS06060 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AL543_RS06125 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AL543_RS06130 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AL543_RS06235 PF07517 SecA DEAD-like domain AL543_RS06235 PF01043 SecA preprotein cross-linking domain AL543_RS06235 PF07516 SecA Wing and Scaffold domain AL543_RS06235 PF02810 SEC-C motif AL543_RS06240 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL543_RS06240 PF01872 RibD C-terminal domain AL543_RS06265 PF04229 GrpB protein AL543_RS06275 PF13302 Acetyltransferase (GNAT) domain AL543_RS06335 PF07517 SecA DEAD-like domain AL543_RS06335 PF07516 SecA Wing and Scaffold domain AL543_RS06335 PF02810 SEC-C motif AL543_RS06335 PF01043 SecA preprotein cross-linking domain AL543_RS06340 PF00589 Phage integrase family AL543_RS06340 PF13495 Phage integrase, N-terminal SAM-like domain AL543_RS06345 PF01797 Transposase IS200 like AL543_RS06350 PF00453 Ribosomal protein L20 AL543_RS06355 PF01632 Ribosomal protein L35 AL543_RS06360 PF00707 Translation initiation factor IF-3, C-terminal domain AL543_RS06360 PF05198 Translation initiation factor IF-3, N-terminal domain AL543_RS06365 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL543_RS06365 PF02824 TGS domain AL543_RS06365 PF03129 Anticodon binding domain AL543_RS06365 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL543_RS06370 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL543_RS06370 PF01571 Aminomethyltransferase folate-binding domain AL543_RS06380 PF00464 Serine hydroxymethyltransferase AL543_RS06385 PF01597 Glycine cleavage H-protein AL543_RS06395 PF02347 Glycine cleavage system P-protein AL543_RS06400 PF17996 Carbohydrate esterase 2 N-terminal AL543_RS06400 PF13472 GDSL-like Lipase/Acylhydrolase family AL543_RS06405 PF00194 Eukaryotic-type carbonic anhydrase AL543_RS06420 PF07943 Penicillin-binding protein 5, C-terminal domain AL543_RS06420 PF00768 D-alanyl-D-alanine carboxypeptidase AL543_RS06425 PF09339 IclR helix-turn-helix domain AL543_RS06425 PF01614 Bacterial transcriptional regulator AL543_RS06430 PF00672 HAMP domain AL543_RS06430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS06430 PF12729 Four helix bundle sensory module for signal transduction AL543_RS06435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_RS06435 PF00005 ABC transporter AL543_RS06440 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_RS06440 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS06445 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS06450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_RS06460 PF13186 Iron-sulfur cluster-binding domain AL543_RS06460 PF04055 Radical SAM superfamily AL543_RS06465 PF00884 Sulfatase AL543_RS06470 PF00884 Sulfatase AL543_RS06470 PF16385 Domain of unknown function AL543_RS06475 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS06475 PF08448 PAS fold AL543_RS06480 PF02278 Polysaccharide lyase family 8, super-sandwich domain AL543_RS06480 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain AL543_RS06480 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AL543_RS06485 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain AL543_RS06485 PF17386 Lacto-N-biose phosphorylase C-terminal domain AL543_RS06485 PF17385 Lacto-N-biose phosphorylase central domain AL543_RS06490 PF07470 Glycosyl Hydrolase Family 88 AL543_RS06500 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL543_RS06500 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL543_RS06505 PF01081 KDPG and KHG aldolase AL543_RS06510 PF00294 pfkB family carbohydrate kinase AL543_RS06515 PF04962 KduI/IolB family AL543_RS06525 PF00491 Arginase family AL543_RS06530 PF17944 Arginine decarboxylase C-terminal helical extension AL543_RS06530 PF17810 Arginine decarboxylase helical bundle domain AL543_RS06530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL543_RS06555 PF00571 CBS domain AL543_RS06555 PF03448 MgtE intracellular N domain AL543_RS06555 PF01769 Divalent cation transporter AL543_RS06560 PF00696 Amino acid kinase family AL543_RS06560 PF13840 ACT domain AL543_RS06565 PF06339 Ectoine synthase AL543_RS06570 PF00202 Aminotransferase class-III AL543_RS06575 PF00583 Acetyltransferase (GNAT) family AL543_RS06580 PF12833 Helix-turn-helix domain AL543_RS06590 PF01554 MatE AL543_RS06600 PF01329 Pterin 4 alpha carbinolamine dehydratase AL543_RS06605 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL543_RS06610 PF13193 AMP-binding enzyme C-terminal domain AL543_RS06610 PF00501 AMP-binding enzyme AL543_RS06635 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AL543_RS06635 PF14602 Hexapeptide repeat of succinyl-transferase AL543_RS06635 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_RS06640 PF01595 Cyclin M transmembrane N-terminal domain AL543_RS06640 PF03471 Transporter associated domain AL543_RS06640 PF00571 CBS domain AL543_RS06645 PF02566 OsmC-like protein AL543_RS06650 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL543_RS06655 PF00563 EAL domain AL543_RS06655 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS06655 PF08447 PAS fold AL543_RS06655 PF08448 PAS fold AL543_RS06660 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_RS06660 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL543_RS06675 PF13520 Amino acid permease AL543_RS06680 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS06690 PF00072 Response regulator receiver domain AL543_RS06690 PF04397 LytTr DNA-binding domain AL543_RS06695 PF06580 Histidine kinase AL543_RS06695 PF07694 5TMR of 5TMR-LYT AL543_RS06695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS06710 PF02687 FtsX-like permease family AL543_RS06710 PF12704 MacB-like periplasmic core domain AL543_RS06715 PF00005 ABC transporter AL543_RS06725 PF00248 Aldo/keto reductase family AL543_RS06730 PF00128 Alpha amylase, catalytic domain AL543_RS06735 PF13358 DDE superfamily endonuclease AL543_RS06765 PF07504 Fungalysin/Thermolysin Propeptide Motif AL543_RS06765 PF03413 Peptidase propeptide and YPEB domain AL543_RS06765 PF01447 Thermolysin metallopeptidase, catalytic domain AL543_RS06765 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL543_RS06765 PF04151 Bacterial pre-peptidase C-terminal domain AL543_RS06770 PF03922 OmpW family AL543_RS06780 PF00768 D-alanyl-D-alanine carboxypeptidase AL543_RS06790 PF01336 OB-fold nucleic acid binding domain AL543_RS06790 PF02811 PHP domain AL543_RS06790 PF14579 Helix-hairpin-helix motif AL543_RS06790 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL543_RS06790 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL543_RS06795 PF01351 Ribonuclease HII AL543_RS06800 PF02684 Lipid-A-disaccharide synthetase AL543_RS06805 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL543_RS06805 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_RS06810 PF07977 FabA-like domain AL543_RS06815 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL543_RS06815 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_RS06820 PF03938 Outer membrane protein (OmpH-like) AL543_RS06825 PF07244 Surface antigen variable number repeat AL543_RS06825 PF01103 Surface antigen AL543_RS06830 PF17820 PDZ domain AL543_RS06830 PF02163 Peptidase family M50 AL543_RS06835 PF13288 DXP reductoisomerase C-terminal domain AL543_RS06835 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL543_RS06835 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL543_RS06845 PF01255 Putative undecaprenyl diphosphate synthase AL543_RS06850 PF01765 Ribosome recycling factor AL543_RS06855 PF00696 Amino acid kinase family AL543_RS06860 PF00889 Elongation factor TS AL543_RS06865 PF00318 Ribosomal protein S2 AL543_RS06870 PF00557 Metallopeptidase family M24 AL543_RS06875 PF01909 Nucleotidyltransferase domain AL543_RS06875 PF08335 GlnD PII-uridylyltransferase AL543_RS06875 PF01966 HD domain AL543_RS06880 PF11944 Protein of unknown function (DUF3461) AL543_RS06885 PF04608 Phosphatidylglycerophosphatase A AL543_RS06890 PF00586 AIR synthase related protein, N-terminal domain AL543_RS06890 PF02769 AIR synthase related protein, C-terminal domain AL543_RS06895 PF01029 NusB family AL543_RS06900 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL543_RS06905 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL543_RS06905 PF00925 GTP cyclohydrolase II AL543_RS06910 PF00677 Lumazine binding domain AL543_RS06915 PF01872 RibD C-terminal domain AL543_RS06915 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL543_RS06920 PF03477 ATP cone domain AL543_RS06925 PF00171 Aldehyde dehydrogenase family AL543_RS06930 PF00696 Amino acid kinase family AL543_RS06930 PF01472 PUA domain AL543_RS06935 PF07417 Sigma factor-binding transcriptional regulator Crl AL543_RS06940 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) AL543_RS06945 PF00156 Phosphoribosyl transferase domain AL543_RS06950 PF00860 Permease family AL543_RS06955 PF01546 Peptidase family M20/M25/M40 AL543_RS06955 PF07687 Peptidase dimerisation domain AL543_RS06960 PF18030 RimK PreATP-grasp domain AL543_RS06960 PF08443 RimK-like ATP-grasp domain AL543_RS06965 PF08443 RimK-like ATP-grasp domain AL543_RS06965 PF18030 RimK PreATP-grasp domain AL543_RS06975 PF00209 Sodium:neurotransmitter symporter family AL543_RS06980 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS06980 PF00360 Phytochrome region AL543_RS06980 PF00563 EAL domain AL543_RS06980 PF01590 GAF domain AL543_RS06990 PF11798 IMS family HHH motif AL543_RS06990 PF00817 impB/mucB/samB family AL543_RS07000 PF02424 ApbE family AL543_RS07010 PF00970 Oxidoreductase FAD-binding domain AL543_RS07010 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_RS07010 PF00175 Oxidoreductase NAD-binding domain AL543_RS07015 PF02508 Rnf-Nqr subunit, membrane protein AL543_RS07020 PF02508 Rnf-Nqr subunit, membrane protein AL543_RS07025 PF04205 FMN-binding domain AL543_RS07030 PF03116 NQR2, RnfD, RnfE family AL543_RS07035 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL543_RS07035 PF11973 NQRA C-terminal domain AL543_RS07040 PF01722 BolA-like protein AL543_RS07045 PF05175 Methyltransferase small domain AL543_RS07055 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL543_RS07060 PF07690 Major Facilitator Superfamily AL543_RS07070 PF04542 Sigma-70 region 2 AL543_RS07070 PF04545 Sigma-70, region 4 AL543_RS07080 PF03502 Nucleoside-specific channel-forming protein, Tsx AL543_RS07085 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL543_RS07085 PF02558 Ketopantoate reductase PanE/ApbA AL543_RS07090 PF01965 DJ-1/PfpI family AL543_RS07095 PF00266 Aminotransferase class-V AL543_RS07100 PF02657 Fe-S metabolism associated domain AL543_RS07105 PF00899 ThiF family AL543_RS07110 PF03562 MltA specific insert domain AL543_RS07110 PF06725 3D domain AL543_RS07120 PF00696 Amino acid kinase family AL543_RS07120 PF00583 Acetyltransferase (GNAT) family AL543_RS07130 PF13538 UvrD-like helicase C-terminal domain AL543_RS07135 PF12705 PD-(D/E)XK nuclease superfamily AL543_RS07135 PF13361 UvrD-like helicase C-terminal domain AL543_RS07135 PF00580 UvrD/REP helicase N-terminal domain AL543_RS07140 PF17946 RecC C-terminal domain AL543_RS07155 PF07130 YebG protein AL543_RS07165 PF14602 Hexapeptide repeat of succinyl-transferase AL543_RS07165 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL543_RS07170 PF01797 Transposase IS200 like AL543_RS07180 PF00583 Acetyltransferase (GNAT) family AL543_RS07185 PF18030 RimK PreATP-grasp domain AL543_RS07185 PF02080 TrkA-C domain AL543_RS07185 PF08443 RimK-like ATP-grasp domain AL543_RS07190 PF01544 CorA-like Mg2+ transporter protein AL543_RS07200 PF01588 Putative tRNA binding domain AL543_RS07205 PF00356 Bacterial regulatory proteins, lacI family AL543_RS07210 PF13006 Insertion element 4 transposase N-terminal AL543_RS07210 PF01609 Transposase DDE domain AL543_RS07215 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL543_RS07215 PF02929 Beta galactosidase small chain AL543_RS07215 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL543_RS07215 PF00703 Glycosyl hydrolases family 2 AL543_RS07215 PF16353 Domain of unknown function(DUF4981) AL543_RS07225 PF00072 Response regulator receiver domain AL543_RS07230 PF00501 AMP-binding enzyme AL543_RS07240 PF03466 LysR substrate binding domain AL543_RS07240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS07245 PF03144 Elongation factor Tu domain 2 AL543_RS07245 PF14492 Elongation Factor G, domain II AL543_RS07245 PF00679 Elongation factor G C-terminus AL543_RS07245 PF03764 Elongation factor G, domain IV AL543_RS07245 PF00009 Elongation factor Tu GTP binding domain AL543_RS07250 PF18073 Rubredoxin metal binding domain AL543_RS07265 PF18429 Domain of unknown function (DUF5609) AL543_RS07275 PF01048 Phosphorylase superfamily AL543_RS07280 PF01676 Metalloenzyme superfamily AL543_RS07285 PF02885 Glycosyl transferase family, helical bundle domain AL543_RS07285 PF00591 Glycosyl transferase family, a/b domain AL543_RS07285 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL543_RS07290 PF01791 DeoC/LacD family aldolase AL543_RS07300 PF07670 Nucleoside recognition AL543_RS07300 PF07662 Na+ dependent nucleoside transporter C-terminus AL543_RS07300 PF01773 Na+ dependent nucleoside transporter N-terminus AL543_RS07305 PF01026 TatD related DNase AL543_RS07310 PF03883 Peroxide stress protein YaaA AL543_RS07315 PF01235 Sodium:alanine symporter family AL543_RS07330 PF03167 Uracil DNA glycosylase superfamily AL543_RS07335 PF01261 Xylose isomerase-like TIM barrel AL543_RS07340 PF01228 Glycine radical AL543_RS07345 PF14821 Threonine synthase N terminus AL543_RS07345 PF00291 Pyridoxal-phosphate dependent enzyme AL543_RS07350 PF08544 GHMP kinases C terminal AL543_RS07350 PF00288 GHMP kinases N terminal domain AL543_RS07355 PF01842 ACT domain AL543_RS07355 PF00696 Amino acid kinase family AL543_RS07355 PF13840 ACT domain AL543_RS07355 PF03447 Homoserine dehydrogenase, NAD binding domain AL543_RS07355 PF00742 Homoserine dehydrogenase AL543_RS07370 PF03737 Aldolase/RraA AL543_RS07380 PF00072 Response regulator receiver domain AL543_RS07380 PF00486 Transcriptional regulatory protein, C terminal AL543_RS07385 PF01627 Hpt domain AL543_RS07385 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL543_RS07385 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS07385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS07385 PF00072 Response regulator receiver domain AL543_RS07385 PF00989 PAS fold AL543_RS07390 PF00360 Phytochrome region AL543_RS07390 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS07390 PF01590 GAF domain AL543_RS07390 PF00563 EAL domain AL543_RS07395 PF16199 Radical_SAM C-terminal domain AL543_RS07395 PF04055 Radical SAM superfamily AL543_RS07400 PF01645 Conserved region in glutamate synthase AL543_RS07400 PF04898 Glutamate synthase central domain AL543_RS07400 PF00310 Glutamine amidotransferases class-II AL543_RS07400 PF01493 GXGXG motif AL543_RS07405 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_RS07405 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL543_RS07410 PF00310 Glutamine amidotransferases class-II AL543_RS07410 PF01645 Conserved region in glutamate synthase AL543_RS07410 PF04898 Glutamate synthase central domain AL543_RS07410 PF01493 GXGXG motif AL543_RS07415 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL543_RS07415 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_RS07425 PF01048 Phosphorylase superfamily AL543_RS07435 PF01497 Periplasmic binding protein AL543_RS07440 PF03458 UPF0126 domain AL543_RS07445 PF03466 LysR substrate binding domain AL543_RS07445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS07450 PF01925 Sulfite exporter TauE/SafE AL543_RS07455 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL543_RS07455 PF02142 MGS-like domain AL543_RS07455 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL543_RS07460 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL543_RS07460 PF00117 Glutamine amidotransferase class-I AL543_RS07470 PF05173 Dihydrodipicolinate reductase, C-terminus AL543_RS07470 PF01113 Dihydrodipicolinate reductase, N-terminus AL543_RS07475 PF00293 NUDIX domain AL543_RS07480 PF01043 SecA preprotein cross-linking domain AL543_RS07480 PF07517 SecA DEAD-like domain AL543_RS07480 PF07516 SecA Wing and Scaffold domain AL543_RS07480 PF02810 SEC-C motif AL543_RS07500 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL543_RS07505 PF00091 Tubulin/FtsZ family, GTPase domain AL543_RS07505 PF12327 FtsZ family, C-terminal domain AL543_RS07510 PF02491 SHS2 domain inserted in FTSA AL543_RS07515 PF03799 Cell division protein FtsQ AL543_RS07515 PF08478 POTRA domain, FtsQ-type AL543_RS07520 PF02875 Mur ligase family, glutamate ligase domain AL543_RS07520 PF08245 Mur ligase middle domain AL543_RS07520 PF01225 Mur ligase family, catalytic domain AL543_RS07525 PF03033 Glycosyltransferase family 28 N-terminal domain AL543_RS07525 PF04101 Glycosyltransferase family 28 C-terminal domain AL543_RS07530 PF01098 Cell cycle protein AL543_RS07535 PF02875 Mur ligase family, glutamate ligase domain AL543_RS07535 PF08245 Mur ligase middle domain AL543_RS07540 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL543_RS07540 PF00953 Glycosyl transferase family 4 AL543_RS07545 PF08245 Mur ligase middle domain AL543_RS07545 PF02875 Mur ligase family, glutamate ligase domain AL543_RS07545 PF01225 Mur ligase family, catalytic domain AL543_RS07550 PF02875 Mur ligase family, glutamate ligase domain AL543_RS07550 PF01225 Mur ligase family, catalytic domain AL543_RS07550 PF08245 Mur ligase middle domain AL543_RS07555 PF00905 Penicillin binding protein transpeptidase domain AL543_RS07555 PF03717 Penicillin-binding Protein dimerisation domain AL543_RS07560 PF04999 Cell division protein FtsL AL543_RS07565 PF01795 MraW methylase family AL543_RS07575 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_RS07575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL543_RS07580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL543_RS07580 PF00364 Biotin-requiring enzyme AL543_RS07580 PF02817 e3 binding domain AL543_RS07585 PF00456 Transketolase, thiamine diphosphate binding domain AL543_RS07585 PF17831 Pyruvate dehydrogenase E1 component middle domain AL543_RS07590 PF07729 FCD domain AL543_RS07590 PF00392 Bacterial regulatory proteins, gntR family AL543_RS07600 PF02872 5'-nucleotidase, C-terminal domain AL543_RS07600 PF00149 Calcineurin-like phosphoesterase AL543_RS07605 PF02833 DHHA2 domain AL543_RS07605 PF01368 DHH family AL543_RS07610 PF17768 RecJ OB domain AL543_RS07610 PF02272 DHHA1 domain AL543_RS07610 PF01368 DHH family AL543_RS07615 PF13098 Thioredoxin-like domain AL543_RS07615 PF10411 Disulfide bond isomerase protein N-terminus AL543_RS07620 PF02899 Phage integrase, N-terminal SAM-like domain AL543_RS07620 PF00589 Phage integrase family AL543_RS07625 PF00258 Flavodoxin AL543_RS07630 PF01510 N-acetylmuramoyl-L-alanine amidase AL543_RS07635 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL543_RS07635 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL543_RS07640 PF07963 Prokaryotic N-terminal methylation motif AL543_RS07640 PF00114 Pilin (bacterial filament) AL543_RS07645 PF00437 Type II/IV secretion system protein AL543_RS07645 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL543_RS07650 PF00482 Type II secretion system (T2SS), protein F AL543_RS07655 PF06750 Bacterial Peptidase A24 N-terminal domain AL543_RS07655 PF01478 Type IV leader peptidase family AL543_RS07660 PF01121 Dephospho-CoA kinase AL543_RS07665 PF07072 Cell division protein AL543_RS07670 PF03884 DNA gyrase inhibitor YacG AL543_RS07675 PF03989 DNA gyrase C-terminal domain, beta-propeller AL543_RS07675 PF00521 DNA gyrase/topoisomerase IV, subunit A AL543_RS07680 PF00204 DNA gyrase B AL543_RS07680 PF01751 Toprim domain AL543_RS07680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS07680 PF00986 DNA gyrase B subunit, carboxyl terminus AL543_RS07685 PF05728 Uncharacterised protein family (UPF0227) AL543_RS07690 PF00149 Calcineurin-like phosphoesterase AL543_RS07695 PF06853 Protein of unknown function (DUF1249) AL543_RS07700 PF00293 NUDIX domain AL543_RS07705 PF02321 Outer membrane efflux protein AL543_RS07710 PF01467 Cytidylyltransferase-like AL543_RS07710 PF00294 pfkB family carbohydrate kinase AL543_RS07715 PF03710 Glutamate-ammonia ligase adenylyltransferase AL543_RS07715 PF08335 GlnD PII-uridylyltransferase AL543_RS07720 PF00672 HAMP domain AL543_RS07720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS07725 PF07885 Ion channel AL543_RS07730 PF01928 CYTH domain AL543_RS07735 PF01865 Protein of unknown function DUF47 AL543_RS07745 PF01384 Phosphate transporter family AL543_RS07750 PF08239 Bacterial SH3 domain AL543_RS07760 PF01471 Putative peptidoglycan binding domain AL543_RS07760 PF13401 AAA domain AL543_RS07765 PF12627 Probable RNA and SrmB- binding site of polymerase A AL543_RS07765 PF01966 HD domain AL543_RS07765 PF01743 Poly A polymerase head domain AL543_RS07770 PF01212 Beta-eliminating lyase AL543_RS07775 PF03222 Tryptophan/tyrosine permease family AL543_RS07780 PF08543 Phosphomethylpyrimidine kinase AL543_RS07785 PF00113 Enolase, C-terminal TIM barrel domain AL543_RS07785 PF03952 Enolase, N-terminal domain AL543_RS07790 PF00117 Glutamine amidotransferase class-I AL543_RS07790 PF06418 CTP synthase N-terminus AL543_RS07795 PF03819 MazG nucleotide pyrophosphohydrolase domain AL543_RS07800 PF13291 ACT domain AL543_RS07800 PF04607 Region found in RelA / SpoT proteins AL543_RS07800 PF02824 TGS domain AL543_RS07805 PF01938 TRAM domain AL543_RS07805 PF05958 tRNA (Uracil-5-)-methyltransferase AL543_RS07810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS07810 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL543_RS07810 PF00072 Response regulator receiver domain AL543_RS07810 PF01627 Hpt domain AL543_RS07810 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS07810 PF00672 HAMP domain AL543_RS07815 PF00563 EAL domain AL543_RS07815 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS07830 PF01648 4'-phosphopantetheinyl transferase superfamily AL543_RS07835 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL543_RS07840 PF11967 Recombination protein O N terminal AL543_RS07840 PF02565 Recombination protein O C terminal AL543_RS07845 PF07650 KH domain AL543_RS07845 PF01926 50S ribosome-binding GTPase AL543_RS07850 PF00035 Double-stranded RNA binding motif AL543_RS07850 PF14622 Ribonuclease-III-like AL543_RS07855 PF10502 Signal peptidase, peptidase S26 AL543_RS07860 PF00009 Elongation factor Tu GTP binding domain AL543_RS07860 PF00679 Elongation factor G C-terminus AL543_RS07860 PF06421 GTP-binding protein LepA C-terminus AL543_RS07860 PF03144 Elongation factor Tu domain 2 AL543_RS07870 PF03888 MucB/RseB N-terminal domain AL543_RS07870 PF17188 MucB/RseB C-terminal domain AL543_RS07875 PF03872 Anti sigma-E protein RseA, N-terminal domain AL543_RS07875 PF03873 Anti sigma-E protein RseA, C-terminal domain AL543_RS07880 PF08281 Sigma-70, region 4 AL543_RS07880 PF04542 Sigma-70 region 2 AL543_RS07890 PF02910 Fumarate reductase flavoprotein C-term AL543_RS07890 PF00890 FAD binding domain AL543_RS07900 PF03937 Flavinator of succinate dehydrogenase AL543_RS07915 PF01494 FAD binding domain AL543_RS07920 PF01494 FAD binding domain AL543_RS07925 PF03695 Uncharacterised protein family (UPF0149) AL543_RS07930 PF05164 Cell division protein ZapA AL543_RS07940 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL543_RS07945 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL543_RS07950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL543_RS07950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL543_RS07950 PF01842 ACT domain AL543_RS07955 PF10369 Small subunit of acetolactate synthase AL543_RS07960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL543_RS07960 PF00205 Thiamine pyrophosphate enzyme, central domain AL543_RS07960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL543_RS07965 PF00501 AMP-binding enzyme AL543_RS07970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS07970 PF03466 LysR substrate binding domain AL543_RS07980 PF01569 PAP2 superfamily AL543_RS07995 PF08502 LeuA allosteric (dimerisation) domain AL543_RS07995 PF00682 HMGL-like AL543_RS08000 PF00180 Isocitrate/isopropylmalate dehydrogenase AL543_RS08005 PF00330 Aconitase family (aconitate hydratase) AL543_RS08010 PF00694 Aconitase C-terminal domain AL543_RS08065 PF00072 Response regulator receiver domain AL543_RS08080 PF03739 Lipopolysaccharide export system permease LptF/LptG AL543_RS08085 PF03739 Lipopolysaccharide export system permease LptF/LptG AL543_RS08090 PF02789 Cytosol aminopeptidase family, N-terminal domain AL543_RS08090 PF00883 Cytosol aminopeptidase family, catalytic domain AL543_RS08095 PF04364 DNA polymerase III chi subunit, HolC AL543_RS08100 PF00133 tRNA synthetases class I (I, L, M and V) AL543_RS08100 PF10458 Valyl tRNA synthetase tRNA binding arm AL543_RS08100 PF08264 Anticodon-binding domain of tRNA AL543_RS08115 PF05987 Bacterial protein of unknown function (DUF898) AL543_RS08120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL543_RS08120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL543_RS08125 PF00849 RNA pseudouridylate synthase AL543_RS08130 PF12137 RNA polymerase recycling family C-terminal AL543_RS08130 PF00176 SNF2 family N-terminal domain AL543_RS08130 PF18337 RapA N-terminal Tudor like domain AL543_RS08130 PF00271 Helicase conserved C-terminal domain AL543_RS08130 PF18339 RapA N-terminal Tudor like domain 1 AL543_RS08140 PF02562 PhoH-like protein AL543_RS08140 PF13638 PIN domain AL543_RS08145 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL543_RS08145 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL543_RS08155 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL543_RS08155 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL543_RS08160 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL543_RS08160 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL543_RS08170 PF01042 Endoribonuclease L-PSP AL543_RS08175 PF01553 Acyltransferase AL543_RS08180 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL543_RS08185 PF01722 BolA-like protein AL543_RS08195 PF05494 MlaC protein AL543_RS08200 PF02470 MlaD protein AL543_RS08205 PF02405 Permease MlaE AL543_RS08210 PF00005 ABC transporter AL543_RS08215 PF01699 Sodium/calcium exchanger protein AL543_RS08220 PF01380 SIS domain AL543_RS08220 PF00571 CBS domain AL543_RS08235 PF03968 OstA-like protein AL543_RS08240 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL543_RS08240 PF00005 ABC transporter AL543_RS08245 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL543_RS08245 PF04552 Sigma-54, DNA binding domain AL543_RS08245 PF04963 Sigma-54 factor, core binding domain AL543_RS08250 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL543_RS08255 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL543_RS08260 PF03668 P-loop ATPase protein family AL543_RS08265 PF00381 PTS HPr component phosphorylation site AL543_RS08270 PF03448 MgtE intracellular N domain AL543_RS08270 PF00571 CBS domain AL543_RS08270 PF01769 Divalent cation transporter AL543_RS08275 PF01523 Putative modulator of DNA gyrase AL543_RS08280 PF04751 Protein of unknown function (DUF615) AL543_RS08285 PF00005 ABC transporter AL543_RS08290 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS08300 PF02441 Flavoprotein AL543_RS08305 PF01225 Mur ligase family, catalytic domain AL543_RS08305 PF02875 Mur ligase family, glutamate ligase domain AL543_RS08305 PF08245 Mur ligase middle domain AL543_RS08315 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL543_RS08320 PF00719 Inorganic pyrophosphatase AL543_RS08330 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL543_RS08335 PF04357 TamB, inner membrane protein subunit of TAM complex AL543_RS08340 PF07244 Surface antigen variable number repeat AL543_RS08340 PF17243 POTRA domain TamA domain 1 AL543_RS08340 PF01103 Surface antigen AL543_RS08345 PF01625 Peptide methionine sulfoxide reductase AL543_RS08350 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL543_RS08355 PF10795 Protein of unknown function (DUF2607) AL543_RS08365 PF00005 ABC transporter AL543_RS08390 PF00009 Elongation factor Tu GTP binding domain AL543_RS08395 PF01507 Phosphoadenosine phosphosulfate reductase family AL543_RS08400 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL543_RS08400 PF10414 Sirohaem synthase dimerisation region AL543_RS08400 PF14824 Sirohaem biosynthesis protein central AL543_RS08405 PF00149 Calcineurin-like phosphoesterase AL543_RS08405 PF02872 5'-nucleotidase, C-terminal domain AL543_RS08415 PF00271 Helicase conserved C-terminal domain AL543_RS08415 PF00270 DEAD/DEAH box helicase AL543_RS08415 PF03880 DbpA RNA binding domain AL543_RS08420 PF13673 Acetyltransferase (GNAT) domain AL543_RS08425 PF00892 EamA-like transporter family AL543_RS08430 PF08525 Opacity-associated protein A N-terminal motif AL543_RS08430 PF04225 Opacity-associated protein A LysM-like domain AL543_RS08435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL543_RS08435 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL543_RS08445 PF01196 Ribosomal protein L17 AL543_RS08450 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL543_RS08450 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL543_RS08450 PF01000 RNA polymerase Rpb3/RpoA insert domain AL543_RS08455 PF00163 Ribosomal protein S4/S9 N-terminal domain AL543_RS08455 PF01479 S4 domain AL543_RS08460 PF00411 Ribosomal protein S11 AL543_RS08465 PF00416 Ribosomal protein S13/S18 AL543_RS08470 PF00444 Ribosomal protein L36 AL543_RS08475 PF00344 SecY translocase AL543_RS08480 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AL543_RS08485 PF00327 Ribosomal protein L30p/L7e AL543_RS08490 PF03719 Ribosomal protein S5, C-terminal domain AL543_RS08490 PF00333 Ribosomal protein S5, N-terminal domain AL543_RS08495 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL543_RS08500 PF00347 Ribosomal protein L6 AL543_RS08505 PF00410 Ribosomal protein S8 AL543_RS08510 PF00253 Ribosomal protein S14p/S29e AL543_RS08515 PF00281 Ribosomal protein L5 AL543_RS08515 PF00673 ribosomal L5P family C-terminus AL543_RS08520 PF00467 KOW motif AL543_RS08520 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL543_RS08525 PF00238 Ribosomal protein L14p/L23e AL543_RS08530 PF00366 Ribosomal protein S17 AL543_RS08535 PF00831 Ribosomal L29 protein AL543_RS08540 PF00252 Ribosomal protein L16p/L10e AL543_RS08545 PF07650 KH domain AL543_RS08545 PF00189 Ribosomal protein S3, C-terminal domain AL543_RS08550 PF00237 Ribosomal protein L22p/L17e AL543_RS08555 PF00203 Ribosomal protein S19 AL543_RS08560 PF03947 Ribosomal Proteins L2, C-terminal domain AL543_RS08560 PF00181 Ribosomal Proteins L2, RNA binding domain AL543_RS08565 PF00276 Ribosomal protein L23 AL543_RS08570 PF00573 Ribosomal protein L4/L1 family AL543_RS08575 PF00297 Ribosomal protein L3 AL543_RS08580 PF00338 Ribosomal protein S10p/S20e AL543_RS08585 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL543_RS08585 PF00588 SpoU rRNA Methylase family AL543_RS08590 PF08206 Ribonuclease B OB domain AL543_RS08590 PF17876 Cold shock domain AL543_RS08590 PF00575 S1 RNA binding domain AL543_RS08590 PF08461 Ribonuclease R winged-helix domain AL543_RS08590 PF00773 RNB domain AL543_RS08595 PF00884 Sulfatase AL543_RS08595 PF11893 Domain of unknown function (DUF3413) AL543_RS08600 PF08238 Sel1 repeat AL543_RS08610 PF00709 Adenylosuccinate synthetase AL543_RS08615 PF01112 Asparaginase AL543_RS08620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL543_RS08630 PF00999 Sodium/hydrogen exchanger family AL543_RS08630 PF02254 TrkA-N domain AL543_RS08635 PF02525 Flavodoxin-like fold AL543_RS08640 PF12848 ABC transporter AL543_RS08640 PF00005 ABC transporter AL543_RS08650 PF00561 alpha/beta hydrolase fold AL543_RS08655 PF06794 Uncharacterised protein family (UPF0270) AL543_RS08660 PF00485 Phosphoribulokinase / Uridine kinase family AL543_RS08665 PF13545 Crp-like helix-turn-helix domain AL543_RS08665 PF00027 Cyclic nucleotide-binding domain AL543_RS08675 PF00171 Aldehyde dehydrogenase family AL543_RS08680 PF04958 Arginine N-succinyltransferase beta subunit AL543_RS08685 PF00202 Aminotransferase class-III AL543_RS08690 PF00117 Glutamine amidotransferase class-I AL543_RS08695 PF00919 Uncharacterized protein family UPF0004 AL543_RS08695 PF18693 TRAM domain AL543_RS08695 PF04055 Radical SAM superfamily AL543_RS08710 PF00579 tRNA synthetases class I (W and Y) AL543_RS08715 PF13419 Haloacid dehalogenase-like hydrolase AL543_RS08720 PF00834 Ribulose-phosphate 3 epimerase family AL543_RS08725 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL543_RS08735 PF01761 3-dehydroquinate synthase AL543_RS08740 PF01202 Shikimate kinase AL543_RS08745 PF03958 Bacterial type II/III secretion system short domain AL543_RS08745 PF11741 AMIN domain AL543_RS08745 PF00263 Bacterial type II and III secretion system protein AL543_RS08745 PF07660 Secretin and TonB N terminus short domain AL543_RS08750 PF04351 Pilus assembly protein, PilP AL543_RS08770 PF00905 Penicillin binding protein transpeptidase domain AL543_RS08770 PF17092 Penicillin-binding protein OB-like domain AL543_RS08770 PF00912 Transglycosylase AL543_RS08775 PF03466 LysR substrate binding domain AL543_RS08775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS08780 PF00462 Glutaredoxin AL543_RS08780 PF08534 Redoxin AL543_RS08785 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_RS08785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL543_RS08795 PF00206 Lyase AL543_RS08795 PF14698 Argininosuccinate lyase C-terminal AL543_RS08800 PF00764 Arginosuccinate synthase AL543_RS08805 PF00696 Amino acid kinase family AL543_RS08810 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL543_RS08810 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL543_RS08815 PF07687 Peptidase dimerisation domain AL543_RS08815 PF01546 Peptidase family M20/M25/M40 AL543_RS08820 PF00311 Phosphoenolpyruvate carboxylase AL543_RS08830 PF06426 Serine acetyltransferase, N-terminal AL543_RS08830 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_RS08835 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL543_RS08835 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL543_RS08840 PF02556 Preprotein translocase subunit SecB AL543_RS08845 PF00581 Rhodanese-like domain AL543_RS08850 PF00152 tRNA synthetases class II (D, K and N) AL543_RS08855 PF00890 FAD binding domain AL543_RS08855 PF02910 Fumarate reductase flavoprotein C-term AL543_RS08860 PF13183 4Fe-4S dicluster domain AL543_RS08860 PF13085 2Fe-2S iron-sulfur cluster binding domain AL543_RS08865 PF02300 Fumarate reductase subunit C AL543_RS08870 PF02313 Fumarate reductase subunit D AL543_RS08875 PF08207 Elongation factor P (EF-P) KOW-like domain AL543_RS08875 PF09285 Elongation factor P, C-terminal AL543_RS08875 PF01132 Elongation factor P (EF-P) OB domain AL543_RS08880 PF04055 Radical SAM superfamily AL543_RS08900 PF00118 TCP-1/cpn60 chaperonin family AL543_RS08905 PF00166 Chaperonin 10 Kd subunit AL543_RS08910 PF08220 DeoR-like helix-turn-helix domain AL543_RS08910 PF00455 DeoR C terminal sensor domain AL543_RS08930 PF00121 Triosephosphate isomerase AL543_RS08935 PF01554 MatE AL543_RS08940 PF03737 Aldolase/RraA AL543_RS08945 PF01040 UbiA prenyltransferase family AL543_RS08950 PF07724 AAA domain (Cdc48 subfamily) AL543_RS08950 PF10431 C-terminal, D2-small domain, of ClpB protein AL543_RS08950 PF00004 ATPase family associated with various cellular activities (AAA) AL543_RS08955 PF00227 Proteasome subunit AL543_RS08965 PF00356 Bacterial regulatory proteins, lacI family AL543_RS08970 PF18074 Primosomal protein N C-terminal domain AL543_RS08970 PF17764 3′ DNA-binding domain (3′BD) AL543_RS08970 PF00271 Helicase conserved C-terminal domain AL543_RS08970 PF00270 DEAD/DEAH box helicase AL543_RS08970 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL543_RS08975 PF01197 Ribosomal protein L31 AL543_RS08985 PF03949 Malic enzyme, NAD binding domain AL543_RS08985 PF00390 Malic enzyme, N-terminal domain AL543_RS08990 PF01340 Met Apo-repressor, MetJ AL543_RS08995 PF01053 Cys/Met metabolism PLP-dependent enzyme AL543_RS09000 PF00696 Amino acid kinase family AL543_RS09000 PF00742 Homoserine dehydrogenase AL543_RS09000 PF03447 Homoserine dehydrogenase, NAD binding domain AL543_RS09005 PF02219 Methylenetetrahydrofolate reductase AL543_RS09010 PF06005 Cell division protein ZapB AL543_RS09015 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL543_RS09020 PF00365 Phosphofructokinase AL543_RS09025 PF01545 Cation efflux family AL543_RS09025 PF16916 Dimerisation domain of Zinc Transporter AL543_RS09035 PF00072 Response regulator receiver domain AL543_RS09035 PF00486 Transcriptional regulatory protein, C terminal AL543_RS09040 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS09040 PF00672 HAMP domain AL543_RS09040 PF16527 Two-component sensor protein CpxA, periplasmic domain AL543_RS09040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS09045 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL543_RS09045 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL543_RS09050 PF00588 SpoU rRNA Methylase family AL543_RS09055 PF04186 FxsA cytoplasmic membrane protein AL543_RS09060 PF10415 Fumarase C C-terminus AL543_RS09060 PF00206 Lyase AL543_RS09065 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL543_RS09070 PF02683 Cytochrome C biogenesis protein transmembrane region AL543_RS09070 PF11412 Disulphide bond corrector protein DsbC AL543_RS09075 PF00072 Response regulator receiver domain AL543_RS09075 PF00196 Bacterial regulatory proteins, luxR family AL543_RS09085 PF03471 Transporter associated domain AL543_RS09085 PF00999 Sodium/hydrogen exchanger family AL543_RS09085 PF02080 TrkA-C domain AL543_RS09095 PF00474 Sodium:solute symporter family AL543_RS09100 PF02592 Putative vitamin uptake transporter AL543_RS09105 PF00625 Guanylate kinase AL543_RS09110 PF01192 RNA polymerase Rpb6 AL543_RS09115 PF13291 ACT domain AL543_RS09115 PF02824 TGS domain AL543_RS09115 PF04607 Region found in RelA / SpoT proteins AL543_RS09120 PF17191 RecG wedge domain AL543_RS09120 PF00271 Helicase conserved C-terminal domain AL543_RS09120 PF00270 DEAD/DEAH box helicase AL543_RS09125 PF00860 Permease family AL543_RS09130 PF00672 HAMP domain AL543_RS09130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS09130 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS09135 PF00072 Response regulator receiver domain AL543_RS09135 PF00486 Transcriptional regulatory protein, C terminal AL543_RS09140 PF01915 Glycosyl hydrolase family 3 C-terminal domain AL543_RS09140 PF00933 Glycosyl hydrolase family 3 N terminal domain AL543_RS09145 PF02653 Branched-chain amino acid transport system / permease component AL543_RS09150 PF00005 ABC transporter AL543_RS09165 PF01272 Transcription elongation factor, GreA/GreB, C-term AL543_RS09165 PF03449 Transcription elongation factor, N-terminal AL543_RS09170 PF00575 S1 RNA binding domain AL543_RS09170 PF16921 Tex protein YqgF-like domain AL543_RS09170 PF09371 Tex-like protein N-terminal domain AL543_RS09170 PF17674 HHH domain AL543_RS09180 PF00561 alpha/beta hydrolase fold AL543_RS09185 PF00156 Phosphoribosyl transferase domain AL543_RS09190 PF01106 NifU-like domain AL543_RS09190 PF01521 Iron-sulphur cluster biosynthesis AL543_RS09195 PF00293 NUDIX domain AL543_RS09200 PF00459 Inositol monophosphatase family AL543_RS09205 PF01203 Type II secretion system (T2SS), protein N AL543_RS09210 PF04612 Type II secretion system (T2SS), protein M AL543_RS09215 PF12693 GspL periplasmic domain AL543_RS09215 PF05134 Type II secretion system (T2SS), protein L AL543_RS09220 PF03934 Type II secretion system (T2SS), protein K AL543_RS09225 PF11612 Type II secretion system (T2SS), protein J AL543_RS09225 PF07963 Prokaryotic N-terminal methylation motif AL543_RS09230 PF07963 Prokaryotic N-terminal methylation motif AL543_RS09230 PF02501 Type II secretion system (T2SS), protein I AL543_RS09235 PF12019 Type II transport protein GspH AL543_RS09240 PF08334 Type II secretion system (T2SS), protein G AL543_RS09240 PF07963 Prokaryotic N-terminal methylation motif AL543_RS09245 PF00482 Type II secretion system (T2SS), protein F AL543_RS09250 PF00437 Type II/IV secretion system protein AL543_RS09255 PF00263 Bacterial type II and III secretion system protein AL543_RS09255 PF03958 Bacterial type II/III secretion system short domain AL543_RS09260 PF11356 Type II secretion system protein C AL543_RS09265 PF01479 S4 domain AL543_RS09270 PF01430 Hsp33 protein AL543_RS09280 PF01293 Phosphoenolpyruvate carboxykinase AL543_RS09290 PF00583 Acetyltransferase (GNAT) family AL543_RS09290 PF09500 Putative thioesterase (yiiD_Cterm) AL543_RS09295 PF02580 D-Tyr-tRNA(Tyr) deacylase AL543_RS09300 PF03631 Virulence factor BrkB AL543_RS09310 PF03144 Elongation factor Tu domain 2 AL543_RS09310 PF00009 Elongation factor Tu GTP binding domain AL543_RS09310 PF00679 Elongation factor G C-terminus AL543_RS09320 PF03951 Glutamine synthetase, beta-Grasp domain AL543_RS09320 PF00120 Glutamine synthetase, catalytic domain AL543_RS09330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS09330 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS09330 PF00989 PAS fold AL543_RS09335 PF02954 Bacterial regulatory protein, Fis family AL543_RS09335 PF00072 Response regulator receiver domain AL543_RS09335 PF00158 Sigma-54 interaction domain AL543_RS09340 PF13188 PAS domain AL543_RS09340 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS09340 PF00563 EAL domain AL543_RS09340 PF03707 Bacterial signalling protein N terminal repeat AL543_RS09345 PF00962 Adenosine/AMP deaminase AL543_RS09355 PF13358 DDE superfamily endonuclease AL543_RS09365 PF13358 DDE superfamily endonuclease AL543_RS09425 PF01177 Asp/Glu/Hydantoin racemase AL543_RS09430 PF00082 Subtilase family AL543_RS09430 PF05922 Peptidase inhibitor I9 AL543_RS09430 PF04151 Bacterial pre-peptidase C-terminal domain AL543_RS09435 PF07715 TonB-dependent Receptor Plug Domain AL543_RS09435 PF00593 TonB dependent receptor AL543_RS09440 PF05958 tRNA (Uracil-5-)-methyltransferase AL543_RS09475 PF04002 RadC-like JAB domain AL543_RS09490 PF12161 HsdM N-terminal domain AL543_RS09490 PF02384 N-6 DNA Methylase AL543_RS09495 PF01420 Type I restriction modification DNA specificity domain AL543_RS09510 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AL543_RS09510 PF12008 Type I restriction and modification enzyme - subunit R C terminal AL543_RS09510 PF18766 SWI2/SNF2 ATPase AL543_RS09520 PF07226 Protein of unknown function (DUF1422) AL543_RS09525 PF00440 Bacterial regulatory proteins, tetR family AL543_RS09530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL543_RS09530 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_RS09535 PF04542 Sigma-70 region 2 AL543_RS09535 PF04545 Sigma-70, region 4 AL543_RS09535 PF00140 Sigma-70 factor, region 1.2 AL543_RS09540 PF18075 FtsX extracellular domain AL543_RS09545 PF00005 ABC transporter AL543_RS09550 PF00448 SRP54-type protein, GTPase domain AL543_RS09550 PF02881 SRP54-type protein, helical bundle domain AL543_RS09590 PF00210 Ferritin-like domain AL543_RS09595 PF08668 HDOD domain AL543_RS09595 PF00563 EAL domain AL543_RS09600 PF01810 LysE type translocator AL543_RS09605 PF12146 Serine aminopeptidase, S33 AL543_RS09625 PF00563 EAL domain AL543_RS09625 PF08495 FIST N domain AL543_RS09625 PF10442 FIST C domain AL543_RS09625 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS09630 PF13419 Haloacid dehalogenase-like hydrolase AL543_RS09635 PF00589 Phage integrase family AL543_RS09635 PF02899 Phage integrase, N-terminal SAM-like domain AL543_RS09640 PF04340 Protein of unknown function, DUF484 AL543_RS09645 PF01678 Diaminopimelate epimerase AL543_RS09650 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL543_RS09650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL543_RS09660 PF01491 Frataxin-like domain AL543_RS09665 PF12633 Adenylate cyclase NT domain AL543_RS09665 PF01295 Adenylate cyclase, class-I AL543_RS09675 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL543_RS09675 PF03900 Porphobilinogen deaminase, C-terminal domain AL543_RS09680 PF02602 Uroporphyrinogen-III synthase HemD AL543_RS09685 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL543_RS09690 PF07219 HemY protein N-terminus AL543_RS09695 PF04055 Radical SAM superfamily AL543_RS09695 PF06969 HemN C-terminal domain AL543_RS09700 PF10675 Protein of unknown function (DUF2489) AL543_RS09705 PF04220 Der GTPase activator (YihI) AL543_RS09715 PF00034 Cytochrome c AL543_RS09720 PF01926 50S ribosome-binding GTPase AL543_RS09730 PF01612 3'-5' exonuclease AL543_RS09730 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL543_RS09730 PF01367 5'-3' exonuclease, C-terminal SAM fold AL543_RS09730 PF00476 DNA polymerase family A AL543_RS09735 PF00583 Acetyltransferase (GNAT) family AL543_RS09740 PF00490 Delta-aminolevulinic acid dehydratase AL543_RS09745 PF01026 TatD related DNase AL543_RS09755 PF00581 Rhodanese-like domain AL543_RS09760 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL543_RS09760 PF01694 Rhomboid family AL543_RS09765 PF03748 Flagellar basal body-associated protein FliL AL543_RS09775 PF04345 Chorismate lyase AL543_RS09780 PF01040 UbiA prenyltransferase family AL543_RS09785 PF01553 Acyltransferase AL543_RS09790 PF00717 Peptidase S24-like AL543_RS09790 PF01726 LexA DNA binding domain AL543_RS09800 PF01554 MatE AL543_RS09805 PF00902 Sec-independent protein translocase protein (TatC) AL543_RS09810 PF02416 mttA/Hcf106 family AL543_RS09815 PF02416 mttA/Hcf106 family AL543_RS09820 PF03109 ABC1 family AL543_RS09825 PF02036 SCP-2 sterol transfer family AL543_RS09830 PF01209 ubiE/COQ5 methyltransferase family AL543_RS09835 PF02646 RmuC family AL543_RS09845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS09845 PF08447 PAS fold AL543_RS09900 PF13401 AAA domain AL543_RS09900 PF11426 Tn7 transposition regulator TnsC AL543_RS09910 PF13358 DDE superfamily endonuclease AL543_RS09920 PF08721 TnsA endonuclease C terminal AL543_RS09920 PF08722 TnsA endonuclease N terminal AL543_RS09930 PF10625 Universal stress protein B (UspB) AL543_RS09935 PF00210 Ferritin-like domain AL543_RS09945 PF00582 Universal stress protein family AL543_RS09950 PF00892 EamA-like transporter family AL543_RS09960 PF04445 Putative SAM-dependent methyltransferase AL543_RS09965 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS09965 PF08448 PAS fold AL543_RS09965 PF00563 EAL domain AL543_RS09970 PF01037 Lrp/AsnC ligand binding domain AL543_RS09980 PF07690 Major Facilitator Superfamily AL543_RS09985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS09985 PF03466 LysR substrate binding domain AL543_RS09990 PF01321 Creatinase/Prolidase N-terminal domain AL543_RS09990 PF00557 Metallopeptidase family M24 AL543_RS09990 PF00557 Metallopeptidase family M24 AL543_RS09990 PF01321 Creatinase/Prolidase N-terminal domain AL543_RS09995 PF06968 Biotin and Thiamin Synthesis associated domain AL543_RS09995 PF04055 Radical SAM superfamily AL543_RS10000 PF05690 Thiazole biosynthesis protein ThiG AL543_RS10005 PF02597 ThiS family AL543_RS10010 PF00899 ThiF family AL543_RS10015 PF02581 Thiamine monophosphate synthase AL543_RS10020 PF01964 Radical SAM ThiC family AL543_RS10020 PF13667 ThiC-associated domain AL543_RS10025 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL543_RS10035 PF00589 Phage integrase family AL543_RS10035 PF13356 Arm DNA-binding domain AL543_RS10045 PF01380 SIS domain AL543_RS10045 PF01418 Helix-turn-helix domain, rpiR family AL543_RS10050 PF13580 SIS domain AL543_RS10055 PF00367 phosphotransferase system, EIIB AL543_RS10055 PF02378 Phosphotransferase system, EIIC AL543_RS10070 PF13358 DDE superfamily endonuclease AL543_RS10095 PF02384 N-6 DNA Methylase AL543_RS10095 PF12161 HsdM N-terminal domain AL543_RS10170 PF12724 Flavodoxin domain AL543_RS10175 PF02386 Cation transport protein AL543_RS10180 PF01205 Uncharacterized protein family UPF0029 AL543_RS10180 PF09186 Domain of unknown function (DUF1949) AL543_RS10185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL543_RS10185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL543_RS10185 PF00378 Enoyl-CoA hydratase/isomerase AL543_RS10190 PF00108 Thiolase, N-terminal domain AL543_RS10190 PF02803 Thiolase, C-terminal domain AL543_RS10195 PF03466 LysR substrate binding domain AL543_RS10195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS10200 PF07690 Major Facilitator Superfamily AL543_RS10205 PF12804 MobA-like NTP transferase domain AL543_RS10205 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_RS10210 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL543_RS10210 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL543_RS10215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL543_RS10215 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL543_RS10220 PF00231 ATP synthase AL543_RS10225 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL543_RS10225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL543_RS10225 PF00306 ATP synthase alpha/beta chain, C terminal domain AL543_RS10230 PF00213 ATP synthase delta (OSCP) subunit AL543_RS10235 PF00430 ATP synthase B/B' CF(0) AL543_RS10240 PF00137 ATP synthase subunit C AL543_RS10245 PF00119 ATP synthase A chain AL543_RS10250 PF03899 ATP synthase I chain AL543_RS10255 PF17762 HTH domain found in ParB protein AL543_RS10255 PF02195 ParB-like nuclease domain AL543_RS10260 PF13614 AAA domain AL543_RS10265 PF02527 rRNA small subunit methyltransferase G AL543_RS10270 PF01134 Glucose inhibited division protein A AL543_RS10270 PF13932 GidA associated domain AL543_RS10275 PF00258 Flavodoxin AL543_RS10290 PF10396 GTP-binding protein TrmE N-terminus AL543_RS10290 PF12631 MnmE helical domain AL543_RS10290 PF01926 50S ribosome-binding GTPase AL543_RS10295 PF02096 60Kd inner membrane protein AL543_RS10295 PF14849 YidC periplasmic domain AL543_RS10300 PF01809 Putative membrane protein insertion efficiency factor AL543_RS10305 PF00825 Ribonuclease P AL543_RS10310 PF00468 Ribosomal protein L34 AL543_RS10315 PF00005 ABC transporter AL543_RS10320 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS10325 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_RS10330 PF08299 Bacterial dnaA protein helix-turn-helix AL543_RS10330 PF11638 DnaA N-terminal domain AL543_RS10330 PF00308 Bacterial dnaA protein AL543_RS10335 PF00712 DNA polymerase III beta subunit, N-terminal domain AL543_RS10335 PF02767 DNA polymerase III beta subunit, central domain AL543_RS10335 PF02768 DNA polymerase III beta subunit, C-terminal domain AL543_RS10340 PF02463 RecF/RecN/SMC N terminal domain AL543_RS10345 PF01751 Toprim domain AL543_RS10345 PF00986 DNA gyrase B subunit, carboxyl terminus AL543_RS10345 PF00204 DNA gyrase B AL543_RS10345 PF18053 DNA gyrase B subunit insert domain AL543_RS10345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS10360 PF00011 Hsp20/alpha crystallin family AL543_RS10365 PF00155 Aminotransferase class I and II AL543_RS10370 PF02092 Glycyl-tRNA synthetase beta subunit AL543_RS10370 PF05746 DALR anticodon binding domain AL543_RS10375 PF02091 Glycyl-tRNA synthetase alpha subunit AL543_RS10380 PF01169 Uncharacterized protein family UPF0016 AL543_RS10390 PF01206 Sulfurtransferase TusA AL543_RS10400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS10400 PF03466 LysR substrate binding domain AL543_RS10405 PF00107 Zinc-binding dehydrogenase AL543_RS10405 PF08240 Alcohol dehydrogenase GroES-like domain AL543_RS10410 PF00585 C-terminal regulatory domain of Threonine dehydratase AL543_RS10410 PF00291 Pyridoxal-phosphate dependent enzyme AL543_RS10415 PF00920 Dehydratase family AL543_RS10420 PF01063 Amino-transferase class IV AL543_RS10430 PF00205 Thiamine pyrophosphate enzyme, central domain AL543_RS10430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL543_RS10430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL543_RS10435 PF01078 Magnesium chelatase, subunit ChlI AL543_RS10435 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL543_RS10440 PF01553 Acyltransferase AL543_RS10445 PF01323 DSBA-like thioredoxin domain AL543_RS10450 PF01636 Phosphotransferase enzyme family AL543_RS10455 PF13746 4Fe-4S dicluster domain AL543_RS10455 PF12801 4Fe-4S binding domain AL543_RS10455 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL543_RS10460 PF06288 Protein of unknown function (DUF1040) AL543_RS10470 PF07070 SpoOM protein AL543_RS10475 PF03006 Haemolysin-III related AL543_RS10485 PF02386 Cation transport protein AL543_RS10490 PF02080 TrkA-C domain AL543_RS10490 PF02254 TrkA-N domain AL543_RS10495 PF01189 16S rRNA methyltransferase RsmB/F AL543_RS10495 PF01029 NusB family AL543_RS10500 PF00551 Formyl transferase AL543_RS10500 PF02911 Formyl transferase, C-terminal domain AL543_RS10505 PF01327 Polypeptide deformylase AL543_RS10510 PF01476 LysM domain AL543_RS10515 PF17782 DprA winged helix domain AL543_RS10515 PF02481 DNA recombination-mediator protein A AL543_RS10520 PF04361 Protein of unknown function (DUF494) AL543_RS10525 PF01396 Topoisomerase DNA binding C4 zinc finger AL543_RS10530 PF02222 ATP-grasp domain AL543_RS10530 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL543_RS10535 PF00731 AIR carboxylase AL543_RS10540 PF01300 Telomere recombination AL543_RS10545 PF01218 Coproporphyrinogen III oxidase AL543_RS10550 PF01488 Shikimate / quinate 5-dehydrogenase AL543_RS10550 PF08501 Shikimate dehydrogenase substrate binding domain AL543_RS10550 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL543_RS10560 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_RS10600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS10600 PF03466 LysR substrate binding domain AL543_RS10605 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL543_RS10605 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL543_RS10610 PF04380 Membrane fusogenic activity AL543_RS10615 PF00873 AcrB/AcrD/AcrF family AL543_RS10620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL543_RS10625 PF00440 Bacterial regulatory proteins, tetR family AL543_RS10630 PF13361 UvrD-like helicase C-terminal domain AL543_RS10630 PF00580 UvrD/REP helicase N-terminal domain AL543_RS10635 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL543_RS10665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_RS10665 PF00005 ABC transporter AL543_RS10670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_RS10675 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS10680 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_RS10680 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS10725 PF01734 Patatin-like phospholipase AL543_RS10780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL543_RS10780 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_RS10785 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL543_RS10790 PF01432 Peptidase family M3 AL543_RS10795 PF13361 UvrD-like helicase C-terminal domain AL543_RS10795 PF00580 UvrD/REP helicase N-terminal domain AL543_RS10805 PF01810 LysE type translocator AL543_RS10820 PF00892 EamA-like transporter family AL543_RS10825 PF16124 RecQ zinc-binding AL543_RS10825 PF00570 HRDC domain AL543_RS10825 PF00271 Helicase conserved C-terminal domain AL543_RS10825 PF00270 DEAD/DEAH box helicase AL543_RS10825 PF09382 RQC domain AL543_RS10840 PF07715 TonB-dependent Receptor Plug Domain AL543_RS10840 PF00593 TonB dependent receptor AL543_RS10845 PF00005 ABC transporter AL543_RS10850 PF01497 Periplasmic binding protein AL543_RS10855 PF01032 FecCD transport family AL543_RS10860 PF01418 Helix-turn-helix domain, rpiR family AL543_RS10860 PF01380 SIS domain AL543_RS10865 PF13580 SIS domain AL543_RS10870 PF00367 phosphotransferase system, EIIB AL543_RS10870 PF02378 Phosphotransferase system, EIIC AL543_RS10875 PF03350 Uncharacterized protein family, UPF0114 AL543_RS10880 PF08340 Domain of unknown function (DUF1732) AL543_RS10880 PF03755 YicC-like family, N-terminal region AL543_RS10885 PF03725 3' exoribonuclease family, domain 2 AL543_RS10885 PF01138 3' exoribonuclease family, domain 1 AL543_RS10890 PF00156 Phosphoribosyl transferase domain AL543_RS10895 PF01609 Transposase DDE domain AL543_RS10895 PF13006 Insertion element 4 transposase N-terminal AL543_RS10900 PF03279 Bacterial lipid A biosynthesis acyltransferase AL543_RS10905 PF03279 Bacterial lipid A biosynthesis acyltransferase AL543_RS10910 PF00440 Bacterial regulatory proteins, tetR family AL543_RS10920 PF04127 DNA / pantothenate metabolism flavoprotein AL543_RS10920 PF02441 Flavoprotein AL543_RS10930 PF04002 RadC-like JAB domain AL543_RS10935 PF00830 Ribosomal L28 family AL543_RS10940 PF00471 Ribosomal protein L33 AL543_RS10950 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL543_RS10950 PF06827 Zinc finger found in FPG and IleRS AL543_RS10950 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL543_RS10955 PF01467 Cytidylyltransferase-like AL543_RS10960 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL543_RS10975 PF00535 Glycosyl transferase family 2 AL543_RS10980 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL543_RS11010 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL543_RS11015 PF04488 Glycosyltransferase sugar-binding region containing DXD motif AL543_RS11025 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL543_RS11045 PF00457 Glycosyl hydrolases family 11 AL543_RS11045 PF01522 Polysaccharide deacetylase AL543_RS11050 PF01370 NAD dependent epimerase/dehydratase family AL543_RS11055 PF02706 Chain length determinant protein AL543_RS11060 PF16363 GDP-mannose 4,6 dehydratase AL543_RS11070 PF16363 GDP-mannose 4,6 dehydratase AL543_RS11075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL543_RS11085 PF00535 Glycosyl transferase family 2 AL543_RS11100 PF00534 Glycosyl transferases group 1 AL543_RS11100 PF13477 Glycosyl transferase 4-like AL543_RS11105 PF00953 Glycosyl transferase family 4 AL543_RS11115 PF00924 Mechanosensitive ion channel AL543_RS11120 PF03167 Uracil DNA glycosylase superfamily AL543_RS11125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL543_RS11130 PF04222 Protein of unknown function (DUF416) AL543_RS11135 PF01595 Cyclin M transmembrane N-terminal domain AL543_RS11135 PF00571 CBS domain AL543_RS11140 PF00216 Bacterial DNA-binding protein AL543_RS11150 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL543_RS11150 PF02843 Phosphoribosylglycinamide synthetase, C domain AL543_RS11150 PF02844 Phosphoribosylglycinamide synthetase, N domain AL543_RS11155 PF02142 MGS-like domain AL543_RS11155 PF01808 AICARFT/IMPCHase bienzyme AL543_RS11165 PF13411 MerR HTH family regulatory protein AL543_RS11170 PF00486 Transcriptional regulatory protein, C terminal AL543_RS11170 PF18500 CadC C-terminal domain 1 AL543_RS11175 PF13520 Amino acid permease AL543_RS11180 PF01276 Orn/Lys/Arg decarboxylase, major domain AL543_RS11180 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL543_RS11180 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL543_RS11185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS11185 PF00672 HAMP domain AL543_RS11185 PF17200 Single Cache domain 2 AL543_RS11195 PF00593 TonB dependent receptor AL543_RS11195 PF07715 TonB-dependent Receptor Plug Domain AL543_RS11200 PF01081 KDPG and KHG aldolase AL543_RS11205 PF02447 GntP family permease AL543_RS11210 PF01202 Shikimate kinase AL543_RS11215 PF00920 Dehydratase family AL543_RS11220 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL543_RS11220 PF00356 Bacterial regulatory proteins, lacI family AL543_RS11225 PF02954 Bacterial regulatory protein, Fis family AL543_RS11230 PF01207 Dihydrouridine synthase (Dus) AL543_RS11240 PF02785 Biotin carboxylase C-terminal domain AL543_RS11240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL543_RS11240 PF00289 Biotin carboxylase, N-terminal domain AL543_RS11245 PF00364 Biotin-requiring enzyme AL543_RS11250 PF01220 Dehydroquinase class II AL543_RS11255 PF16177 Acetyl-coenzyme A synthetase N-terminus AL543_RS11255 PF13193 AMP-binding enzyme C-terminal domain AL543_RS11255 PF00501 AMP-binding enzyme AL543_RS11270 PF12832 MFS_1 like family AL543_RS11275 PF00072 Response regulator receiver domain AL543_RS11275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS11275 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS11275 PF09456 RcsC Alpha-Beta-Loop (ABL) AL543_RS11285 PF02541 Ppx/GppA phosphatase family AL543_RS11290 PF00271 Helicase conserved C-terminal domain AL543_RS11290 PF00270 DEAD/DEAH box helicase AL543_RS11295 PF00085 Thioredoxin AL543_RS11300 PF07497 Rho termination factor, RNA-binding domain AL543_RS11300 PF07498 Rho termination factor, N-terminal domain AL543_RS11300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL543_RS11310 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL543_RS11315 PF00970 Oxidoreductase FAD-binding domain AL543_RS11315 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_RS11315 PF00175 Oxidoreductase NAD-binding domain AL543_RS11320 PF00175 Oxidoreductase NAD-binding domain AL543_RS11360 PF13091 PLD-like domain AL543_RS11370 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL543_RS11370 PF01565 FAD binding domain AL543_RS11375 PF03099 Biotin/lipoate A/B protein ligase family AL543_RS11375 PF02237 Biotin protein ligase C terminal domain AL543_RS11375 PF08279 HTH domain AL543_RS11380 PF00485 Phosphoribulokinase / Uridine kinase family AL543_RS11405 PF00009 Elongation factor Tu GTP binding domain AL543_RS11405 PF03143 Elongation factor Tu C-terminal domain AL543_RS11405 PF03144 Elongation factor Tu domain 2 AL543_RS11410 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL543_RS11415 PF00467 KOW motif AL543_RS11415 PF02357 Transcription termination factor nusG AL543_RS11420 PF00298 Ribosomal protein L11, RNA binding domain AL543_RS11420 PF03946 Ribosomal protein L11, N-terminal domain AL543_RS11425 PF00687 Ribosomal protein L1p/L10e family AL543_RS11430 PF00466 Ribosomal protein L10 AL543_RS11435 PF00542 Ribosomal protein L7/L12 C-terminal domain AL543_RS11435 PF16320 Ribosomal protein L7/L12 dimerisation domain AL543_RS11440 PF04563 RNA polymerase beta subunit AL543_RS11440 PF04565 RNA polymerase Rpb2, domain 3 AL543_RS11440 PF04560 RNA polymerase Rpb2, domain 7 AL543_RS11440 PF00562 RNA polymerase Rpb2, domain 6 AL543_RS11440 PF10385 RNA polymerase beta subunit external 1 domain AL543_RS11440 PF04561 RNA polymerase Rpb2, domain 2 AL543_RS11445 PF00623 RNA polymerase Rpb1, domain 2 AL543_RS11445 PF05000 RNA polymerase Rpb1, domain 4 AL543_RS11445 PF04998 RNA polymerase Rpb1, domain 5 AL543_RS11445 PF04997 RNA polymerase Rpb1, domain 1 AL543_RS11445 PF04983 RNA polymerase Rpb1, domain 3 AL543_RS11450 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL543_RS11455 PF00293 NUDIX domain AL543_RS11455 PF09297 NADH pyrophosphatase zinc ribbon domain AL543_RS11460 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL543_RS11465 PF00440 Bacterial regulatory proteins, tetR family AL543_RS11465 PF08360 QacR-like protein, C-terminal region AL543_RS11475 PF01551 Peptidase family M23 AL543_RS11480 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL543_RS11480 PF01676 Metalloenzyme superfamily AL543_RS11490 PF00939 Sodium:sulfate symporter transmembrane region AL543_RS11495 PF02666 Phosphatidylserine decarboxylase AL543_RS11500 PF03193 RsgA GTPase AL543_RS11505 PF00929 Exonuclease AL543_RS11550 PF08331 Domain of unknown function (DUF1730) AL543_RS11555 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL543_RS11560 PF01520 N-acetylmuramoyl-L-alanine amidase AL543_RS11565 PF08676 MutL C terminal dimerisation domain AL543_RS11565 PF01119 DNA mismatch repair protein, C-terminal domain AL543_RS11575 PF17209 Hfq protein AL543_RS11580 PF16360 GTP-binding GTPase Middle Region AL543_RS11580 PF13167 GTP-binding GTPase N-terminal AL543_RS11580 PF01926 50S ribosome-binding GTPase AL543_RS11585 PF12221 Bacterial membrane protein N terminal AL543_RS11585 PF01145 SPFH domain / Band 7 family AL543_RS11590 PF01145 SPFH domain / Band 7 family AL543_RS11595 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL543_RS11600 PF04102 SlyX AL543_RS11610 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL543_RS11610 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL543_RS11615 PF08348 YheO-like PAS domain AL543_RS11615 PF13309 HTH domain AL543_RS11620 PF02635 DsrE/DsrF-like family AL543_RS11625 PF02635 DsrE/DsrF-like family AL543_RS11635 PF00164 Ribosomal protein S12/S23 AL543_RS11640 PF00177 Ribosomal protein S7p/S5e AL543_RS11645 PF03764 Elongation factor G, domain IV AL543_RS11645 PF00009 Elongation factor Tu GTP binding domain AL543_RS11645 PF03144 Elongation factor Tu domain 2 AL543_RS11645 PF00679 Elongation factor G C-terminus AL543_RS11645 PF14492 Elongation Factor G, domain II AL543_RS11650 PF03143 Elongation factor Tu C-terminal domain AL543_RS11650 PF03144 Elongation factor Tu domain 2 AL543_RS11650 PF00009 Elongation factor Tu GTP binding domain AL543_RS11655 PF04324 BFD-like [2Fe-2S] binding domain AL543_RS11660 PF00210 Ferritin-like domain AL543_RS11665 PF01250 Ribosomal protein S6 AL543_RS11670 PF00436 Single-strand binding protein family AL543_RS11675 PF01084 Ribosomal protein S18 AL543_RS11680 PF03948 Ribosomal protein L9, C-terminal domain AL543_RS11680 PF01281 Ribosomal protein L9, N-terminal domain AL543_RS11690 PF03796 DnaB-like helicase C terminal domain AL543_RS11690 PF00772 DnaB-like helicase N terminal domain AL543_RS11695 PF00842 Alanine racemase, C-terminal domain AL543_RS11695 PF01168 Alanine racemase, N-terminal domain AL543_RS11700 PF01894 Uncharacterised protein family UPF0047 AL543_RS11705 PF00342 Phosphoglucose isomerase AL543_RS11715 PF01475 Ferric uptake regulator family AL543_RS11720 PF01207 Dihydrouridine synthase (Dus) AL543_RS11725 PF09583 Phage shock protein G (Phageshock_PspG) AL543_RS11745 PF00258 Flavodoxin AL543_RS11745 PF00175 Oxidoreductase NAD-binding domain AL543_RS11745 PF00667 FAD binding domain AL543_RS11750 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL543_RS11750 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL543_RS11755 PF01507 Phosphoadenosine phosphosulfate reductase family AL543_RS11820 PF00999 Sodium/hydrogen exchanger family AL543_RS11825 PF02574 Homocysteine S-methyltransferase AL543_RS11825 PF00809 Pterin binding enzyme AL543_RS11825 PF02607 B12 binding domain AL543_RS11825 PF02310 B12 binding domain AL543_RS11825 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL543_RS11830 PF01842 ACT domain AL543_RS11830 PF00696 Amino acid kinase family AL543_RS11835 PF00266 Aminotransferase class-V AL543_RS11845 PF17755 UvrA DNA-binding domain AL543_RS11845 PF00005 ABC transporter AL543_RS11845 PF17760 UvrA interaction domain AL543_RS11850 PF00483 Nucleotidyl transferase AL543_RS11855 PF00196 Bacterial regulatory proteins, luxR family AL543_RS11860 PF00436 Single-strand binding protein family AL543_RS11865 PF00563 EAL domain AL543_RS11865 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS11865 PF17157 Gammaproteobacterial periplasmic sensor domain AL543_RS11885 PF11741 AMIN domain AL543_RS11885 PF07660 Secretin and TonB N terminus short domain AL543_RS11885 PF00263 Bacterial type II and III secretion system protein AL543_RS11885 PF03958 Bacterial type II/III secretion system short domain AL543_RS11890 PF01471 Putative peptidoglycan binding domain AL543_RS11890 PF13401 AAA domain AL543_RS11900 PF00437 Type II/IV secretion system protein AL543_RS11900 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL543_RS11905 PF00482 Type II secretion system (T2SS), protein F AL543_RS11915 PF07963 Prokaryotic N-terminal methylation motif AL543_RS11955 PF04085 rod shape-determining protein MreC AL543_RS11960 PF04093 rod shape-determining protein MreD AL543_RS11965 PF02545 Maf-like protein AL543_RS11970 PF00575 S1 RNA binding domain AL543_RS11970 PF10150 Ribonuclease E/G family AL543_RS11975 PF13502 AsmA-like C-terminal region AL543_RS11975 PF13116 Protein of unknown function AL543_RS11980 PF00795 Carbon-nitrogen hydrolase AL543_RS11985 PF01523 Putative modulator of DNA gyrase AL543_RS11990 PF03063 Prismane/CO dehydrogenase family AL543_RS11995 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_RS11995 PF00175 Oxidoreductase NAD-binding domain AL543_RS11995 PF00970 Oxidoreductase FAD-binding domain AL543_RS12005 PF06877 Regulator of ribonuclease activity B AL543_RS12010 PF01380 SIS domain AL543_RS12010 PF01418 Helix-turn-helix domain, rpiR family AL543_RS12010 PF02685 Glucokinase AL543_RS12020 PF07969 Amidohydrolase family AL543_RS12025 PF13358 DDE superfamily endonuclease AL543_RS12045 PF00474 Sodium:solute symporter family AL543_RS12050 PF02838 Glycosyl hydrolase family 20, domain 2 AL543_RS12050 PF00728 Glycosyl hydrolase family 20, catalytic domain AL543_RS12055 PF10282 Lactonase, 7-bladed beta-propeller AL543_RS12070 PF00582 Universal stress protein family AL543_RS12080 PF16868 NMT1-like family AL543_RS12090 PF02863 Arginine repressor, C-terminal domain AL543_RS12090 PF01316 Arginine repressor, DNA binding domain AL543_RS12095 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL543_RS12095 PF00056 lactate/malate dehydrogenase, NAD binding domain AL543_RS12100 PF13520 Amino acid permease AL543_RS12105 PF00348 Polyprenyl synthetase AL543_RS12110 PF00829 Ribosomal prokaryotic L21 protein AL543_RS12115 PF01016 Ribosomal L27 protein AL543_RS12120 PF01926 50S ribosome-binding GTPase AL543_RS12120 PF01018 GTP1/OBG AL543_RS12125 PF06738 Putative threonine/serine exporter AL543_RS12130 PF12821 Threonine/Serine exporter, ThrE AL543_RS12135 PF00186 Dihydrofolate reductase AL543_RS12140 PF00149 Calcineurin-like phosphoesterase AL543_RS12145 PF04379 ApaG domain AL543_RS12150 PF00398 Ribosomal RNA adenine dimethylase AL543_RS12155 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL543_RS12160 PF09312 SurA N-terminal domain AL543_RS12165 PF03968 OstA-like protein AL543_RS12165 PF04453 LPS transport system D AL543_RS12170 PF05099 Tellurite resistance protein TerB AL543_RS12170 PF00226 DnaJ domain AL543_RS12200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS12200 PF00672 HAMP domain AL543_RS12200 PF17200 Single Cache domain 2 AL543_RS12225 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL543_RS12225 PF01464 Transglycosylase SLT domain AL543_RS12230 PF04362 Bacterial Fe(2+) trafficking AL543_RS12235 PF10576 Iron-sulfur binding domain of endonuclease III AL543_RS12235 PF00633 Helix-hairpin-helix motif AL543_RS12235 PF00730 HhH-GPD superfamily base excision DNA repair protein AL543_RS12235 PF14815 NUDIX domain AL543_RS12240 PF02390 Putative methyltransferase AL543_RS12245 PF04960 Glutaminase AL543_RS12255 PF04055 Radical SAM superfamily AL543_RS12255 PF06969 HemN C-terminal domain AL543_RS12260 PF01725 Ham1 family AL543_RS12270 PF02594 Uncharacterised ACR, YggU family COG1872 AL543_RS12275 PF02325 YGGT family AL543_RS12280 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL543_RS12280 PF03807 NADP oxidoreductase coenzyme F420-dependent AL543_RS12285 PF01168 Alanine racemase, N-terminal domain AL543_RS12290 PF00437 Type II/IV secretion system protein AL543_RS12295 PF00437 Type II/IV secretion system protein AL543_RS12305 PF00579 tRNA synthetases class I (W and Y) AL543_RS12305 PF01479 S4 domain AL543_RS12310 PF03652 Holliday junction resolvase AL543_RS12315 PF02622 Uncharacterized ACR, COG1678 AL543_RS12320 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL543_RS12320 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL543_RS12325 PF04452 RNA methyltransferase AL543_RS12330 PF04231 Endonuclease I AL543_RS12335 PF10263 SprT-like family AL543_RS12335 PF17283 SprT-like zinc ribbon domain AL543_RS12340 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL543_RS12340 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL543_RS12340 PF02772 S-adenosylmethionine synthetase, central domain AL543_RS12350 PF02779 Transketolase, pyrimidine binding domain AL543_RS12350 PF00456 Transketolase, thiamine diphosphate binding domain AL543_RS12350 PF02780 Transketolase, C-terminal domain AL543_RS12355 PF03466 LysR substrate binding domain AL543_RS12355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS12360 PF00593 TonB dependent receptor AL543_RS12360 PF07715 TonB-dependent Receptor Plug Domain AL543_RS12365 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL543_RS12365 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_RS12370 PF00162 Phosphoglycerate kinase AL543_RS12375 PF01116 Fructose-bisphosphate aldolase class-II AL543_RS12380 PF05552 Conserved TM helix AL543_RS12380 PF00924 Mechanosensitive ion channel AL543_RS12385 PF01797 Transposase IS200 like AL543_RS12390 PF01810 LysE type translocator AL543_RS12395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS12395 PF03466 LysR substrate binding domain AL543_RS12400 PF04402 Protein of unknown function (DUF541) AL543_RS12405 PF02887 Pyruvate kinase, alpha/beta domain AL543_RS12405 PF00224 Pyruvate kinase, barrel domain AL543_RS12410 PF08220 DeoR-like helix-turn-helix domain AL543_RS12410 PF00455 DeoR C terminal sensor domain AL543_RS12415 PF01380 SIS domain AL543_RS12420 PF03480 Bacterial extracellular solute-binding protein, family 7 AL543_RS12435 PF04546 Sigma-70, non-essential region AL543_RS12435 PF04545 Sigma-70, region 4 AL543_RS12435 PF04542 Sigma-70 region 2 AL543_RS12435 PF04539 Sigma-70 region 3 AL543_RS12435 PF00140 Sigma-70 factor, region 1.2 AL543_RS12435 PF03979 Sigma-70 factor, region 1.1 AL543_RS12440 PF10410 DnaB-helicase binding domain of primase AL543_RS12440 PF08275 DNA primase catalytic core, N-terminal domain AL543_RS12440 PF01807 CHC2 zinc finger AL543_RS12440 PF08278 DNA primase DnaG DnaB-binding AL543_RS12445 PF09424 Yqey-like protein AL543_RS12450 PF01165 Ribosomal protein S21 AL543_RS12455 PF00814 Glycoprotease family AL543_RS12460 PF00561 alpha/beta hydrolase fold AL543_RS12465 PF02660 Glycerol-3-phosphate acyltransferase AL543_RS12475 PF02152 Dihydroneopterin aldolase AL543_RS12480 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL543_RS12485 PF02673 Bacitracin resistance protein BacA AL543_RS12490 PF04977 Septum formation initiator AL543_RS12495 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL543_RS12500 PF02542 YgbB family AL543_RS12505 PF01142 tRNA pseudouridine synthase D (TruD) AL543_RS12510 PF01975 Survival protein SurE AL543_RS12520 PF01551 Peptidase family M23 AL543_RS12520 PF01476 LysM domain AL543_RS12525 PF04545 Sigma-70, region 4 AL543_RS12525 PF04539 Sigma-70 region 3 AL543_RS12525 PF04542 Sigma-70 region 2 AL543_RS12525 PF00140 Sigma-70 factor, region 1.2 AL543_RS12530 PF05192 MutS domain III AL543_RS12530 PF01624 MutS domain I AL543_RS12530 PF05188 MutS domain II AL543_RS12530 PF05190 MutS family domain IV AL543_RS12530 PF00488 MutS domain V AL543_RS12535 PF00291 Pyridoxal-phosphate dependent enzyme AL543_RS12545 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS12550 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS12555 PF12857 TOBE-like domain AL543_RS12555 PF00005 ABC transporter AL543_RS12560 PF02464 Competence-damaged protein AL543_RS12565 PF00154 recA bacterial DNA recombination protein AL543_RS12570 PF02631 RecX family AL543_RS12575 PF02272 DHHA1 domain AL543_RS12575 PF01411 tRNA synthetases class II (A) AL543_RS12575 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL543_RS12580 PF01842 ACT domain AL543_RS12580 PF13840 ACT domain AL543_RS12580 PF00696 Amino acid kinase family AL543_RS12585 PF02599 Global regulator protein family AL543_RS12630 PF04277 Oxaloacetate decarboxylase, gamma chain AL543_RS12635 PF02436 Conserved carboxylase domain AL543_RS12635 PF00682 HMGL-like AL543_RS12635 PF00364 Biotin-requiring enzyme AL543_RS12640 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL543_RS12645 PF00107 Zinc-binding dehydrogenase AL543_RS12645 PF08240 Alcohol dehydrogenase GroES-like domain AL543_RS12650 PF09335 SNARE associated Golgi protein AL543_RS12655 PF05193 Peptidase M16 inactive domain AL543_RS12655 PF00675 Insulinase (Peptidase family M16) AL543_RS12660 PF04262 Glutamate-cysteine ligase AL543_RS12665 PF02664 S-Ribosylhomocysteinase (LuxS) AL543_RS12670 PF03471 Transporter associated domain AL543_RS12670 PF00571 CBS domain AL543_RS12670 PF01595 Cyclin M transmembrane N-terminal domain AL543_RS12675 PF01578 Cytochrome C assembly protein AL543_RS12680 PF00448 SRP54-type protein, GTPase domain AL543_RS12680 PF02881 SRP54-type protein, helical bundle domain AL543_RS12680 PF02978 Signal peptide binding domain AL543_RS12685 PF00886 Ribosomal protein S16 AL543_RS12690 PF05239 PRC-barrel domain AL543_RS12690 PF01782 RimM N-terminal domain AL543_RS12695 PF01746 tRNA (Guanine-1)-methyltransferase AL543_RS12700 PF01245 Ribosomal protein L19 AL543_RS12705 PF13180 PDZ domain AL543_RS12710 PF00595 PDZ domain AL543_RS12720 PF03969 AFG1-like ATPase AL543_RS12730 PF00572 Ribosomal protein L13 AL543_RS12735 PF00380 Ribosomal protein S9/S16 AL543_RS12740 PF00355 Rieske [2Fe-2S] domain AL543_RS12740 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL543_RS12745 PF00032 Cytochrome b(C-terminal)/b6/petD AL543_RS12745 PF00033 Cytochrome b/b6/petB AL543_RS12750 PF02167 Cytochrome C1 family AL543_RS12755 PF02798 Glutathione S-transferase, N-terminal domain AL543_RS12755 PF00043 Glutathione S-transferase, C-terminal domain AL543_RS12760 PF04386 Stringent starvation protein B AL543_RS12765 PF04972 BON domain AL543_RS12770 PF13580 SIS domain AL543_RS12775 PF02021 Uncharacterised protein family UPF0102 AL543_RS12780 PF04348 LppC putative lipoprotein AL543_RS12785 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL543_RS12790 PF00440 Bacterial regulatory proteins, tetR family AL543_RS12795 PF00156 Phosphoribosyl transferase domain AL543_RS12800 PF00484 Carbonic anhydrase AL543_RS12805 PF00916 Sulfate permease family AL543_RS12805 PF01740 STAS domain AL543_RS12810 PF00005 ABC transporter AL543_RS12815 PF01061 ABC-2 type transporter AL543_RS12820 PF02569 Pantoate-beta-alanine ligase AL543_RS12825 PF02548 Ketopantoate hydroxymethyltransferase AL543_RS12830 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL543_RS12835 PF12627 Probable RNA and SrmB- binding site of polymerase A AL543_RS12835 PF01743 Poly A polymerase head domain AL543_RS12835 PF12626 Polymerase A arginine-rich C-terminus AL543_RS12840 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL543_RS12845 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL543_RS12850 PF03749 Sugar fermentation stimulation protein RE domain AL543_RS12850 PF17746 SfsA N-terminal OB domain AL543_RS12855 PF08482 ATP-dependent helicase C-terminal AL543_RS12855 PF00271 Helicase conserved C-terminal domain AL543_RS12855 PF04408 Helicase associated domain (HA2) AL543_RS12855 PF00270 DEAD/DEAH box helicase AL543_RS12860 PF00905 Penicillin binding protein transpeptidase domain AL543_RS12860 PF14814 Bifunctional transglycosylase second domain AL543_RS12860 PF00912 Transglycosylase AL543_RS12865 PF01734 Patatin-like phospholipase AL543_RS12870 PF00330 Aconitase family (aconitate hydratase) AL543_RS12870 PF06434 Aconitate hydratase 2 N-terminus AL543_RS12870 PF11791 Aconitate B N-terminal domain AL543_RS12875 PF06062 Uncharacterised protein family (UPF0231) AL543_RS12880 PF00543 Nitrogen regulatory protein P-II AL543_RS12885 PF00909 Ammonium Transporter Family AL543_RS12890 PF13416 Bacterial extracellular solute-binding protein AL543_RS12895 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS12900 PF08402 TOBE domain AL543_RS12900 PF00005 ABC transporter AL543_RS12905 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL543_RS12905 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL543_RS12905 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL543_RS12905 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL543_RS12915 PF06165 Glycosyltransferase family 36 AL543_RS12915 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL543_RS12920 PF02838 Glycosyl hydrolase family 20, domain 2 AL543_RS12920 PF00728 Glycosyl hydrolase family 20, catalytic domain AL543_RS12925 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL543_RS12935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_RS12935 PF00005 ABC transporter AL543_RS12940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_RS12940 PF00005 ABC transporter AL543_RS12945 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS12945 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_RS12950 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS12955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_RS12960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS12960 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS12960 PF01627 Hpt domain AL543_RS12960 PF00672 HAMP domain AL543_RS12960 PF00072 Response regulator receiver domain AL543_RS12960 PF17149 Periplasmic sensor domain found in signal transduction proteins AL543_RS12965 PF05175 Methyltransferase small domain AL543_RS12965 PF08468 Methyltransferase small domain N-terminal AL543_RS12970 PF01594 AI-2E family transporter AL543_RS12975 PF00202 Aminotransferase class-III AL543_RS12980 PF01521 Iron-sulphur cluster biosynthesis AL543_RS12990 PF00873 AcrB/AcrD/AcrF family AL543_RS12995 PF01551 Peptidase family M23 AL543_RS12995 PF04225 Opacity-associated protein A LysM-like domain AL543_RS13000 PF01479 S4 domain AL543_RS13000 PF00579 tRNA synthetases class I (W and Y) AL543_RS13005 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL543_RS13010 PF13609 Gram-negative porin AL543_RS13015 PF01272 Transcription elongation factor, GreA/GreB, C-term AL543_RS13015 PF03449 Transcription elongation factor, N-terminal AL543_RS13020 PF01985 CRS1 / YhbY (CRM) domain AL543_RS13025 PF01728 FtsJ-like methyltransferase AL543_RS13030 PF17862 AAA+ lid domain AL543_RS13030 PF01434 Peptidase family M41 AL543_RS13030 PF06480 FtsH Extracellular AL543_RS13030 PF00004 ATPase family associated with various cellular activities (AAA) AL543_RS13035 PF00809 Pterin binding enzyme AL543_RS13040 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL543_RS13040 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL543_RS13040 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL543_RS13040 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL543_RS13050 PF03840 Preprotein translocase SecG subunit AL543_RS13065 PF02576 RimP N-terminal domain AL543_RS13065 PF17384 RimP C-terminal SH3 domain AL543_RS13070 PF00575 S1 RNA binding domain AL543_RS13070 PF08529 NusA N-terminal domain AL543_RS13070 PF13184 NusA-like KH domain AL543_RS13075 PF04760 Translation initiation factor IF-2, N-terminal region AL543_RS13075 PF11987 Translation-initiation factor 2 AL543_RS13075 PF00009 Elongation factor Tu GTP binding domain AL543_RS13075 PF08364 Bacterial translation initiation factor IF-2 associated region AL543_RS13080 PF02033 Ribosome-binding factor A AL543_RS13085 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL543_RS13085 PF09157 Pseudouridine synthase II TruB, C-terminal AL543_RS13085 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL543_RS13090 PF00312 Ribosomal protein S15 AL543_RS13095 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL543_RS13095 PF00013 KH domain AL543_RS13095 PF03725 3' exoribonuclease family, domain 2 AL543_RS13095 PF00575 S1 RNA binding domain AL543_RS13095 PF01138 3' exoribonuclease family, domain 1 AL543_RS13100 PF13181 Tetratricopeptide repeat AL543_RS13100 PF07719 Tetratricopeptide repeat AL543_RS13105 PF01047 MarR family AL543_RS13115 PF01136 Peptidase family U32 AL543_RS13120 PF01136 Peptidase family U32 AL543_RS13125 PF00563 EAL domain AL543_RS13125 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS13125 PF03707 Bacterial signalling protein N terminal repeat AL543_RS13130 PF02036 SCP-2 sterol transfer family AL543_RS13135 PF13508 Acetyltransferase (GNAT) domain AL543_RS13150 PF00563 EAL domain AL543_RS13150 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS13150 PF03707 Bacterial signalling protein N terminal repeat AL543_RS13155 PF03144 Elongation factor Tu domain 2 AL543_RS13155 PF00009 Elongation factor Tu GTP binding domain AL543_RS13155 PF16658 Class II release factor RF3, C-terminal domain AL543_RS13160 PF00271 Helicase conserved C-terminal domain AL543_RS13160 PF00270 DEAD/DEAH box helicase AL543_RS13165 PF05175 Methyltransferase small domain AL543_RS13170 PF05525 Branched-chain amino acid transport protein AL543_RS13180 PF00152 tRNA synthetases class II (D, K and N) AL543_RS13180 PF01336 OB-fold nucleic acid binding domain AL543_RS13185 PF00072 Response regulator receiver domain AL543_RS13185 PF02954 Bacterial regulatory protein, Fis family AL543_RS13185 PF00158 Sigma-54 interaction domain AL543_RS13200 PF00248 Aldo/keto reductase family AL543_RS13205 PF02976 DNA mismatch repair enzyme MutH AL543_RS13210 PF00293 NUDIX domain AL543_RS13215 PF05524 PEP-utilising enzyme, N-terminal AL543_RS13215 PF01590 GAF domain AL543_RS13215 PF02896 PEP-utilising enzyme, TIM barrel domain AL543_RS13215 PF00391 PEP-utilising enzyme, mobile domain AL543_RS13220 PF01925 Sulfite exporter TauE/SafE AL543_RS13225 PF01790 Prolipoprotein diacylglyceryl transferase AL543_RS13230 PF00303 Thymidylate synthase AL543_RS13235 PF02690 Na+/Pi-cotransporter AL543_RS13240 PF13358 DDE superfamily endonuclease AL543_RS13245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS13245 PF03466 LysR substrate binding domain AL543_RS13250 PF01022 Bacterial regulatory protein, arsR family AL543_RS13255 PF01649 Ribosomal protein S20 AL543_RS13260 PF03023 Lipid II flippase MurJ AL543_RS13265 PF01687 Riboflavin kinase AL543_RS13265 PF06574 FAD synthetase AL543_RS13270 PF00133 tRNA synthetases class I (I, L, M and V) AL543_RS13270 PF08264 Anticodon-binding domain of tRNA AL543_RS13270 PF06827 Zinc finger found in FPG and IleRS AL543_RS13275 PF01252 Signal peptidase (SPase) II AL543_RS13280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL543_RS13285 PF02401 LytB protein AL543_RS13290 PF02554 Carbon starvation protein CstA AL543_RS13305 PF13580 SIS domain AL543_RS13310 PF03702 Anhydro-N-acetylmuramic acid kinase AL543_RS13315 PF00933 Glycosyl hydrolase family 3 N terminal domain AL543_RS13320 PF04397 LytTr DNA-binding domain AL543_RS13320 PF00072 Response regulator receiver domain AL543_RS13325 PF06580 Histidine kinase AL543_RS13325 PF07694 5TMR of 5TMR-LYT AL543_RS13330 PF00793 DAHP synthetase I family AL543_RS13335 PF02153 Prephenate dehydrogenase AL543_RS13335 PF01817 Chorismate mutase type II AL543_RS13340 PF07238 PilZ domain AL543_RS13345 PF00005 ABC transporter AL543_RS13345 PF12848 ABC transporter AL543_RS13350 PF01464 Transglycosylase SLT domain AL543_RS13350 PF14718 Soluble lytic murein transglycosylase L domain AL543_RS13355 PF01371 Trp repressor protein AL543_RS13360 PF01931 Protein of unknown function DUF84 AL543_RS13365 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS13365 PF00563 EAL domain AL543_RS13370 PF13416 Bacterial extracellular solute-binding protein AL543_RS13375 PF01817 Chorismate mutase type II AL543_RS13375 PF00800 Prephenate dehydratase AL543_RS13380 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL543_RS13385 PF01797 Transposase IS200 like AL543_RS13390 PF13525 Outer membrane lipoprotein AL543_RS13395 PF00849 RNA pseudouridylate synthase AL543_RS13395 PF01479 S4 domain AL543_RS13400 PF02578 Multi-copper polyphenol oxidoreductase laccase AL543_RS13405 PF10431 C-terminal, D2-small domain, of ClpB protein AL543_RS13405 PF07724 AAA domain (Cdc48 subfamily) AL543_RS13405 PF17871 AAA lid domain AL543_RS13405 PF00004 ATPase family associated with various cellular activities (AAA) AL543_RS13405 PF02861 Clp amino terminal domain, pathogenicity island component AL543_RS13490 PF00593 TonB dependent receptor AL543_RS13490 PF07715 TonB-dependent Receptor Plug Domain AL543_RS13500 PF13580 SIS domain AL543_RS13515 PF00072 Response regulator receiver domain AL543_RS13515 PF00486 Transcriptional regulatory protein, C terminal AL543_RS13525 PF01738 Dienelactone hydrolase family AL543_RS13545 PF00881 Nitroreductase family AL543_RS13550 PF00037 4Fe-4S binding domain AL543_RS13555 PF01136 Peptidase family U32 AL543_RS13555 PF16325 Peptidase family U32 C-terminal domain AL543_RS13560 PF04381 Putative exonuclease, RdgC AL543_RS13565 PF00486 Transcriptional regulatory protein, C terminal AL543_RS13565 PF00072 Response regulator receiver domain AL543_RS13570 PF11808 Phosphate regulon sensor protein PhoR AL543_RS13570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS13570 PF00989 PAS fold AL543_RS13570 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS13575 PF12849 PBP superfamily domain AL543_RS13580 PF02541 Ppx/GppA phosphatase family AL543_RS13585 PF13089 Polyphosphate kinase N-terminal domain AL543_RS13585 PF17941 Polyphosphate kinase C-terminal domain 1 AL543_RS13585 PF13090 Polyphosphate kinase C-terminal domain 2 AL543_RS13585 PF02503 Polyphosphate kinase middle domain AL543_RS13590 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS13595 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS13600 PF00005 ABC transporter AL543_RS13605 PF01895 PhoU domain AL543_RS13610 PF03976 Polyphosphate kinase 2 (PPK2) AL543_RS13615 PF03932 CutC family AL543_RS13620 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL543_RS13620 PF00578 AhpC/TSA family AL543_RS13625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS13625 PF03466 LysR substrate binding domain AL543_RS13630 PF01274 Malate synthase AL543_RS13635 PF00463 Isocitrate lyase family AL543_RS13640 PF00571 CBS domain AL543_RS13645 PF02547 Queuosine biosynthesis protein AL543_RS13655 PF01702 Queuine tRNA-ribosyltransferase AL543_RS13660 PF02699 Preprotein translocase subunit AL543_RS13665 PF13721 SecD export protein N-terminal TM region AL543_RS13665 PF07549 SecD/SecF GG Motif AL543_RS13665 PF02355 Protein export membrane protein AL543_RS13670 PF02355 Protein export membrane protein AL543_RS13670 PF07549 SecD/SecF GG Motif AL543_RS13675 PF00459 Inositol monophosphatase family AL543_RS13680 PF00588 SpoU rRNA Methylase family AL543_RS13685 PF02082 Transcriptional regulator AL543_RS13690 PF00266 Aminotransferase class-V AL543_RS13695 PF01592 NifU-like N terminal domain AL543_RS13700 PF01521 Iron-sulphur cluster biosynthesis AL543_RS13705 PF00226 DnaJ domain AL543_RS13705 PF07743 HSCB C-terminal oligomerisation domain AL543_RS13710 PF00012 Hsp70 protein AL543_RS13715 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_RS13720 PF04384 Iron-sulphur cluster assembly AL543_RS13725 PF00883 Cytosol aminopeptidase family, catalytic domain AL543_RS13725 PF12404 Peptidase AL543_RS13730 PF00334 Nucleoside diphosphate kinase AL543_RS13735 PF04055 Radical SAM superfamily AL543_RS13740 PF13464 Domain of unknown function (DUF4115) AL543_RS13745 PF04551 GcpE protein AL543_RS13750 PF03129 Anticodon binding domain AL543_RS13750 PF13393 Histidyl-tRNA synthetase AL543_RS13755 PF09976 Tetratricopeptide repeat-like domain AL543_RS13760 PF13360 PQQ-like domain AL543_RS13765 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL543_RS13765 PF01926 50S ribosome-binding GTPase AL543_RS13780 PF13742 OB-fold nucleic acid binding domain AL543_RS13780 PF02601 Exonuclease VII, large subunit AL543_RS13785 PF00478 IMP dehydrogenase / GMP reductase domain AL543_RS13785 PF00571 CBS domain AL543_RS13790 PF00117 Glutamine amidotransferase class-I AL543_RS13790 PF02540 NAD synthase AL543_RS13790 PF00958 GMP synthase C terminal domain AL543_RS13795 PF00589 Phage integrase family AL543_RS13795 PF13356 Arm DNA-binding domain AL543_RS13805 PF00580 UvrD/REP helicase N-terminal domain AL543_RS13805 PF13361 UvrD-like helicase C-terminal domain AL543_RS13870 PF13358 DDE superfamily endonuclease AL543_RS13910 PF06483 Chitinase C AL543_RS13910 PF00704 Glycosyl hydrolases family 18 AL543_RS13915 PF01184 GPR1/FUN34/yaaH family AL543_RS13920 PF01797 Transposase IS200 like AL543_RS13925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS13925 PF03466 LysR substrate binding domain AL543_RS13935 PF01235 Sodium:alanine symporter family AL543_RS13940 PF01266 FAD dependent oxidoreductase AL543_RS13945 PF03466 LysR substrate binding domain AL543_RS13945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS13960 PF00563 EAL domain AL543_RS13960 PF12792 CSS motif domain associated with EAL AL543_RS13970 PF00072 Response regulator receiver domain AL543_RS13970 PF12431 Transcriptional regulator AL543_RS13975 PF17203 Single cache domain 3 AL543_RS13975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS13980 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL543_RS13985 PF02436 Conserved carboxylase domain AL543_RS13985 PF00682 HMGL-like AL543_RS13985 PF00364 Biotin-requiring enzyme AL543_RS13990 PF04277 Oxaloacetate decarboxylase, gamma chain AL543_RS13995 PF03390 2-hydroxycarboxylate transporter family AL543_RS14000 PF08218 Citrate lyase ligase C-terminal domain AL543_RS14005 PF06857 Malonate decarboxylase delta subunit (MdcD) AL543_RS14010 PF03328 HpcH/HpaI aldolase/citrate lyase family AL543_RS14015 PF04223 Citrate lyase, alpha subunit (CitF) AL543_RS14020 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase AL543_RS14025 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AL543_RS14035 PF00588 SpoU rRNA Methylase family AL543_RS14035 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL543_RS14040 PF11953 Domain of unknown function (DUF3470) AL543_RS14040 PF00037 4Fe-4S binding domain AL543_RS14065 PF13358 DDE superfamily endonuclease AL543_RS14085 PF13358 DDE superfamily endonuclease AL543_RS14095 PF00176 SNF2 family N-terminal domain AL543_RS14095 PF00271 Helicase conserved C-terminal domain AL543_RS14125 PF00589 Phage integrase family AL543_RS14125 PF13356 Arm DNA-binding domain AL543_RS14135 PF01668 SmpB protein AL543_RS14140 PF03364 Polyketide cyclase / dehydrase and lipid transport AL543_RS14145 PF03658 RnfH family Ubiquitin AL543_RS14150 PF04355 SmpA / OmlA family AL543_RS14155 PF02463 RecF/RecN/SMC N terminal domain AL543_RS14160 PF01513 ATP-NAD kinase AL543_RS14165 PF01025 GrpE AL543_RS14170 PF00012 Hsp70 protein AL543_RS14175 PF00684 DnaJ central domain AL543_RS14175 PF01556 DnaJ C terminal domain AL543_RS14175 PF00226 DnaJ domain AL543_RS14180 PF00114 Pilin (bacterial filament) AL543_RS14180 PF07963 Prokaryotic N-terminal methylation motif AL543_RS14205 PF03806 AbgT putative transporter family AL543_RS14210 PF14437 MafB19-like deaminase AL543_RS14215 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_RS14215 PF01464 Transglycosylase SLT domain AL543_RS14225 PF02769 AIR synthase related protein, C-terminal domain AL543_RS14225 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL543_RS14225 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL543_RS14235 PF06786 Uncharacterised protein family (UPF0253) AL543_RS14245 PF04073 Aminoacyl-tRNA editing domain AL543_RS14245 PF03129 Anticodon binding domain AL543_RS14245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL543_RS14255 PF01980 tRNA-methyltransferase O AL543_RS14255 PF18389 TrmO C-terminal domain AL543_RS14260 PF01197 Ribosomal protein L31 AL543_RS14265 PF00444 Ribosomal protein L36 AL543_RS14270 PF03806 AbgT putative transporter family AL543_RS14275 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL543_RS14305 PF00849 RNA pseudouridylate synthase AL543_RS14310 PF02779 Transketolase, pyrimidine binding domain AL543_RS14310 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL543_RS14310 PF02780 Transketolase, C-terminal domain AL543_RS14315 PF00348 Polyprenyl synthetase AL543_RS14320 PF02609 Exonuclease VII small subunit AL543_RS14325 PF01618 MotA/TolQ/ExbB proton channel family AL543_RS14330 PF00691 OmpA family AL543_RS14330 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL543_RS14335 PF02568 Thiamine biosynthesis protein (ThiI) AL543_RS14335 PF02926 THUMP domain AL543_RS14340 PF03466 LysR substrate binding domain AL543_RS14340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS14345 PF04241 Protein of unknown function (DUF423) AL543_RS14350 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL543_RS14350 PF01367 5'-3' exonuclease, C-terminal SAM fold AL543_RS14355 PF03641 Possible lysine decarboxylase AL543_RS14355 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL543_RS14355 PF11892 Domain of unknown function (DUF3412) AL543_RS14360 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS14370 PF14489 QueF-like protein AL543_RS14370 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL543_RS14375 PF07348 Syd protein (SUKH-2) AL543_RS14380 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL543_RS14385 PF03180 NLPA lipoprotein AL543_RS14390 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS14395 PF00005 ABC transporter AL543_RS14395 PF09383 NIL domain AL543_RS14405 PF00356 Bacterial regulatory proteins, lacI family AL543_RS14410 PF00367 phosphotransferase system, EIIB AL543_RS14410 PF02378 Phosphotransferase system, EIIC AL543_RS14415 PF00128 Alpha amylase, catalytic domain AL543_RS14415 PF16657 Maltogenic Amylase, C-terminal domain AL543_RS14420 PF00486 Transcriptional regulatory protein, C terminal AL543_RS14420 PF00072 Response regulator receiver domain AL543_RS14425 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS14425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS14425 PF00672 HAMP domain AL543_RS14455 PF13533 Biotin-lipoyl like AL543_RS14460 PF00873 AcrB/AcrD/AcrF family AL543_RS14475 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL543_RS14480 PF02350 UDP-N-acetylglucosamine 2-epimerase AL543_RS14485 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL543_RS14485 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL543_RS14485 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL543_RS14510 PF06426 Serine acetyltransferase, N-terminal AL543_RS14510 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_RS14520 PF00534 Glycosyl transferases group 1 AL543_RS14520 PF13439 Glycosyltransferase Family 4 AL543_RS14530 PF03808 Glycosyl transferase WecB/TagA/CpsF family AL543_RS14545 PF17945 Beta/Gamma crystallin AL543_RS14545 PF12561 ToxR activated gene A lipoprotein domain AL543_RS14560 PF02397 Bacterial sugar transferase AL543_RS14570 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL543_RS14570 PF10531 SLBB domain AL543_RS14570 PF02563 Polysaccharide biosynthesis/export protein AL543_RS14575 PF02706 Chain length determinant protein AL543_RS14575 PF13614 AAA domain AL543_RS14575 PF13807 G-rich domain on putative tyrosine kinase AL543_RS14595 PF00464 Serine hydroxymethyltransferase AL543_RS14605 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL543_RS14605 PF04055 Radical SAM superfamily AL543_RS14610 PF03099 Biotin/lipoate A/B protein ligase family AL543_RS14615 PF04359 Protein of unknown function (DUF493) AL543_RS14620 PF00768 D-alanyl-D-alanine carboxypeptidase AL543_RS14620 PF07943 Penicillin-binding protein 5, C-terminal domain AL543_RS14625 PF05036 Sporulation related domain AL543_RS14625 PF03330 Lytic transglycolase AL543_RS14630 PF01098 Cell cycle protein AL543_RS14635 PF03717 Penicillin-binding Protein dimerisation domain AL543_RS14635 PF00905 Penicillin binding protein transpeptidase domain AL543_RS14640 PF02590 Predicted SPOUT methyltransferase AL543_RS14650 PF06144 DNA polymerase III, delta subunit AL543_RS14650 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AL543_RS14655 PF04390 Lipopolysaccharide-assembly AL543_RS14660 PF00133 tRNA synthetases class I (I, L, M and V) AL543_RS14660 PF13603 Leucyl-tRNA synthetase, Domain 2 AL543_RS14660 PF08264 Anticodon-binding domain of tRNA AL543_RS14665 PF07295 Zinc-ribbon containing domain AL543_RS14670 PF00795 Carbon-nitrogen hydrolase AL543_RS14675 PF00571 CBS domain AL543_RS14675 PF03471 Transporter associated domain AL543_RS14680 PF02130 Uncharacterized protein family UPF0054 AL543_RS14685 PF02562 PhoH-like protein AL543_RS14690 PF04055 Radical SAM superfamily AL543_RS14690 PF01938 TRAM domain AL543_RS14690 PF00919 Uncharacterized protein family UPF0004 AL543_RS14695 PF01494 FAD binding domain AL543_RS14700 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL543_RS14705 PF05524 PEP-utilising enzyme, N-terminal AL543_RS14705 PF00391 PEP-utilising enzyme, mobile domain AL543_RS14705 PF02896 PEP-utilising enzyme, TIM barrel domain AL543_RS14710 PF00381 PTS HPr component phosphorylation site AL543_RS14715 PF00291 Pyridoxal-phosphate dependent enzyme AL543_RS14725 PF04354 ZipA, C-terminal FtsZ-binding domain AL543_RS14730 PF12826 Helix-hairpin-helix motif AL543_RS14730 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL543_RS14730 PF03120 NAD-dependent DNA ligase OB-fold domain AL543_RS14730 PF01653 NAD-dependent DNA ligase adenylation domain AL543_RS14730 PF00533 BRCA1 C Terminus (BRCT) domain AL543_RS14735 PF13609 Gram-negative porin AL543_RS14745 PF13411 MerR HTH family regulatory protein AL543_RS14750 PF13006 Insertion element 4 transposase N-terminal AL543_RS14750 PF01609 Transposase DDE domain AL543_RS14755 PF01957 NfeD-like C-terminal, partner-binding AL543_RS14760 PF01145 SPFH domain / Band 7 family AL543_RS14760 PF16200 C-terminal region of band_7 AL543_RS14765 PF00085 Thioredoxin AL543_RS14775 PF00106 short chain dehydrogenase AL543_RS14780 PF01370 NAD dependent epimerase/dehydratase family AL543_RS14780 PF08338 Domain of unknown function (DUF1731) AL543_RS14785 PF12850 Calcineurin-like phosphoesterase superfamily domain AL543_RS14795 PF17323 Trans-membrane regulatory protein ToxS AL543_RS14800 PF00486 Transcriptional regulatory protein, C terminal AL543_RS14805 PF00183 Hsp90 protein AL543_RS14805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS14810 PF05191 Adenylate kinase, active site lid AL543_RS14815 PF00762 Ferrochelatase AL543_RS14820 PF00854 POT family AL543_RS14825 PF02357 Transcription termination factor nusG AL543_RS14830 PF13537 Glutamine amidotransferase domain AL543_RS14830 PF00733 Asparagine synthase AL543_RS14835 PF00999 Sodium/hydrogen exchanger family AL543_RS14835 PF02254 TrkA-N domain AL543_RS14840 PF00480 ROK family AL543_RS14840 PF01047 MarR family AL543_RS14845 PF01979 Amidohydrolase family AL543_RS14850 PF02378 Phosphotransferase system, EIIC AL543_RS14850 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL543_RS14850 PF00367 phosphotransferase system, EIIB AL543_RS14855 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL543_RS14855 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL543_RS14865 PF01416 tRNA pseudouridine synthase AL543_RS14870 PF01039 Carboxyl transferase domain AL543_RS14870 PF17848 Acetyl-coA carboxylase zinc finger domain AL543_RS14875 PF08245 Mur ligase middle domain AL543_RS14875 PF02875 Mur ligase family, glutamate ligase domain AL543_RS14880 PF05036 Sporulation related domain AL543_RS14885 PF02674 Colicin V production protein AL543_RS14890 PF00156 Phosphoribosyl transferase domain AL543_RS14895 PF03553 Na+/H+ antiporter family AL543_RS14895 PF13726 Na+-H+ antiporter family AL543_RS14900 PF00929 Exonuclease AL543_RS14905 PF18393 MotY N-terminal domain AL543_RS14905 PF00691 OmpA family AL543_RS14910 PF10952 Protein of unknown function (DUF2753) AL543_RS14915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_RS14920 PF00730 HhH-GPD superfamily base excision DNA repair protein AL543_RS14920 PF00633 Helix-hairpin-helix motif AL543_RS14920 PF10576 Iron-sulfur binding domain of endonuclease III AL543_RS14925 PF02508 Rnf-Nqr subunit, membrane protein AL543_RS14930 PF04205 FMN-binding domain AL543_RS14935 PF03116 NQR2, RnfD, RnfE family AL543_RS14940 PF10531 SLBB domain AL543_RS14940 PF13375 RnfC Barrel sandwich hybrid domain AL543_RS14940 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL543_RS14940 PF12838 4Fe-4S dicluster domain AL543_RS14945 PF04060 Putative Fe-S cluster AL543_RS14950 PF02508 Rnf-Nqr subunit, membrane protein AL543_RS14955 PF01797 Transposase IS200 like AL543_RS14965 PF17757 UvrB interaction domain AL543_RS14965 PF12344 Ultra-violet resistance protein B AL543_RS14965 PF04851 Type III restriction enzyme, res subunit AL543_RS14965 PF02151 UvrB/uvrC motif AL543_RS14965 PF00271 Helicase conserved C-terminal domain AL543_RS14970 PF00158 Sigma-54 interaction domain AL543_RS14970 PF00072 Response regulator receiver domain AL543_RS14970 PF02954 Bacterial regulatory protein, Fis family AL543_RS14975 PF01627 Hpt domain AL543_RS14980 PF01933 Uncharacterised protein family UPF0052 AL543_RS14985 PF04055 Radical SAM superfamily AL543_RS14985 PF06463 Molybdenum Cofactor Synthesis C AL543_RS14990 PF00994 Probable molybdopterin binding domain AL543_RS14995 PF01967 MoaC family AL543_RS15000 PF02597 ThiS family AL543_RS15005 PF02391 MoaE protein AL543_RS15020 PF01743 Poly A polymerase head domain AL543_RS15020 PF00571 CBS domain AL543_RS15025 PF00403 Heavy-metal-associated domain AL543_RS15030 PF13358 DDE superfamily endonuclease AL543_RS15035 PF01048 Phosphorylase superfamily AL543_RS15045 PF09334 tRNA synthetases class I (M) AL543_RS15045 PF01588 Putative tRNA binding domain AL543_RS15050 PF10609 NUBPL iron-transfer P-loop NTPase AL543_RS15060 PF00485 Phosphoribulokinase / Uridine kinase family AL543_RS15065 PF05170 AsmA family AL543_RS15070 PF12557 Cob(I)alamin adenosyltransferase N terminal AL543_RS15070 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL543_RS15075 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL543_RS15080 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL543_RS15085 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL543_RS15095 PF04542 Sigma-70 region 2 AL543_RS15095 PF08281 Sigma-70, region 4 AL543_RS15105 PF02803 Thiolase, C-terminal domain AL543_RS15105 PF00108 Thiolase, N-terminal domain AL543_RS15110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL543_RS15110 PF00378 Enoyl-CoA hydratase/isomerase AL543_RS15110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL543_RS15115 PF00881 Nitroreductase family AL543_RS15120 PF03466 LysR substrate binding domain AL543_RS15120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS15125 PF00072 Response regulator receiver domain AL543_RS15135 PF04304 Protein of unknown function (DUF454) AL543_RS15140 PF00156 Phosphoribosyl transferase domain AL543_RS15145 PF12169 DNA polymerase III subunits gamma and tau domain III AL543_RS15145 PF12170 DNA polymerase III tau subunit V interacting with alpha AL543_RS15145 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AL543_RS15150 PF02575 YbaB/EbfC DNA-binding family AL543_RS15155 PF13662 Toprim domain AL543_RS15155 PF02132 RecR protein AL543_RS15160 PF03692 Putative zinc- or iron-chelating domain AL543_RS15165 PF03692 Putative zinc- or iron-chelating domain AL543_RS15170 PF00106 short chain dehydrogenase AL543_RS15175 PF01343 Peptidase family S49 AL543_RS15175 PF08496 Peptidase family S49 N-terminal AL543_RS15180 PF00291 Pyridoxal-phosphate dependent enzyme AL543_RS15185 PF01037 Lrp/AsnC ligand binding domain AL543_RS15185 PF13404 AsnC-type helix-turn-helix domain AL543_RS15200 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL543_RS15210 PF00563 EAL domain AL543_RS15210 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS15210 PF03707 Bacterial signalling protein N terminal repeat AL543_RS15240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS15240 PF00672 HAMP domain AL543_RS15245 PF07715 TonB-dependent Receptor Plug Domain AL543_RS15245 PF00593 TonB dependent receptor AL543_RS15250 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AL543_RS15255 PF04183 IucA / IucC family AL543_RS15255 PF06276 Ferric iron reductase FhuF-like transporter AL543_RS15265 PF06276 Ferric iron reductase FhuF-like transporter AL543_RS15265 PF04183 IucA / IucC family AL543_RS15270 PF01032 FecCD transport family AL543_RS15275 PF01497 Periplasmic binding protein AL543_RS15280 PF00005 ABC transporter AL543_RS15300 PF00668 Condensation domain AL543_RS15300 PF13193 AMP-binding enzyme C-terminal domain AL543_RS15300 PF00550 Phosphopantetheine attachment site AL543_RS15300 PF00501 AMP-binding enzyme AL543_RS15310 PF06339 Ectoine synthase AL543_RS15315 PF02770 Acyl-CoA dehydrogenase, middle domain AL543_RS15315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL543_RS15315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL543_RS15320 PF01323 DSBA-like thioredoxin domain AL543_RS15325 PF00893 Small Multidrug Resistance protein AL543_RS15330 PF00893 Small Multidrug Resistance protein AL543_RS15335 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL543_RS15350 PF01022 Bacterial regulatory protein, arsR family AL543_RS15355 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL543_RS15355 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_RS15370 PF00455 DeoR C terminal sensor domain AL543_RS15370 PF08220 DeoR-like helix-turn-helix domain AL543_RS15380 PF08220 DeoR-like helix-turn-helix domain AL543_RS15380 PF00455 DeoR C terminal sensor domain AL543_RS15385 PF08013 Tagatose 6 phosphate kinase AL543_RS15390 PF01380 SIS domain AL543_RS15395 PF03830 PTS system sorbose subfamily IIB component AL543_RS15400 PF03609 PTS system sorbose-specific iic component AL543_RS15405 PF03613 PTS system mannose/fructose/sorbose family IID component AL543_RS15410 PF03610 PTS system fructose IIA component AL543_RS15415 PF01979 Amidohydrolase family AL543_RS15420 PF01116 Fructose-bisphosphate aldolase class-II AL543_RS15435 PF13358 DDE superfamily endonuclease AL543_RS15445 PF06483 Chitinase C AL543_RS15445 PF00704 Glycosyl hydrolases family 18 AL543_RS15455 PF01161 Phosphatidylethanolamine-binding protein AL543_RS15470 PF01300 Telomere recombination AL543_RS15470 PF03481 Putative GTP-binding controlling metal-binding AL543_RS15485 PF00072 Response regulator receiver domain AL543_RS15495 PF00989 PAS fold AL543_RS15495 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS15495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS15495 PF13188 PAS domain AL543_RS15495 PF13426 PAS domain AL543_RS15500 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS15500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS15505 PF03707 Bacterial signalling protein N terminal repeat AL543_RS15505 PF13188 PAS domain AL543_RS15505 PF00563 EAL domain AL543_RS15505 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS15510 PF00158 Sigma-54 interaction domain AL543_RS15510 PF00072 Response regulator receiver domain AL543_RS15510 PF02954 Bacterial regulatory protein, Fis family AL543_RS15515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS15515 PF00072 Response regulator receiver domain AL543_RS15515 PF13188 PAS domain AL543_RS15515 PF08448 PAS fold AL543_RS15515 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS15525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_RS15530 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS15535 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS15535 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_RS15540 PF00005 ABC transporter AL543_RS15540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_RS15545 PF00005 ABC transporter AL543_RS15545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_RS15550 PF13409 Glutathione S-transferase, N-terminal domain AL543_RS15555 PF01515 Phosphate acetyl/butaryl transferase AL543_RS15555 PF07085 DRTGG domain AL543_RS15560 PF00871 Acetokinase family AL543_RS15565 PF04217 Protein of unknown function, DUF412 AL543_RS15570 PF09905 DNA-binding protein VF530 AL543_RS15580 PF02653 Branched-chain amino acid transport system / permease component AL543_RS15585 PF00005 ABC transporter AL543_RS15590 PF05230 MASE2 domain AL543_RS15590 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS15595 PF01207 Dihydrouridine synthase (Dus) AL543_RS15600 PF02810 SEC-C motif AL543_RS15600 PF07517 SecA DEAD-like domain AL543_RS15600 PF01043 SecA preprotein cross-linking domain AL543_RS15600 PF07516 SecA Wing and Scaffold domain AL543_RS15605 PF03548 Outer membrane lipoprotein carrier protein LolA AL543_RS15610 PF00004 ATPase family associated with various cellular activities (AAA) AL543_RS15610 PF16193 AAA C-terminal domain AL543_RS15610 PF12002 MgsA AAA+ ATPase C terminal AL543_RS15615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL543_RS15615 PF02403 Seryl-tRNA synthetase N-terminal domain AL543_RS15620 PF00202 Aminotransferase class-III AL543_RS15625 PF04055 Radical SAM superfamily AL543_RS15625 PF06968 Biotin and Thiamin Synthesis associated domain AL543_RS15630 PF00155 Aminotransferase class I and II AL543_RS15635 PF08241 Methyltransferase domain AL543_RS15650 PF01435 Peptidase family M48 AL543_RS15660 PF00106 short chain dehydrogenase AL543_RS15685 PF16036 Chalcone isomerase-like AL543_RS15695 PF08328 Adenylosuccinate lyase C-terminal AL543_RS15695 PF00206 Lyase AL543_RS15700 PF04356 Protein of unknown function (DUF489) AL543_RS15710 PF00294 pfkB family carbohydrate kinase AL543_RS15715 PF00816 H-NS histone family AL543_RS15720 PF03553 Na+/H+ antiporter family AL543_RS15725 PF01634 ATP phosphoribosyltransferase AL543_RS15725 PF08029 HisG, C-terminal domain AL543_RS15730 PF00815 Histidinol dehydrogenase AL543_RS15735 PF00155 Aminotransferase class I and II AL543_RS15740 PF00475 Imidazoleglycerol-phosphate dehydratase AL543_RS15740 PF08645 Polynucleotide kinase 3 phosphatase AL543_RS15745 PF00117 Glutamine amidotransferase class-I AL543_RS15750 PF00977 Histidine biosynthesis protein AL543_RS15755 PF00977 Histidine biosynthesis protein AL543_RS15760 PF01502 Phosphoribosyl-AMP cyclohydrolase AL543_RS15760 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL543_RS15765 PF00849 RNA pseudouridylate synthase AL543_RS15770 PF03971 Monomeric isocitrate dehydrogenase AL543_RS15775 PF00313 'Cold-shock' DNA-binding domain AL543_RS15780 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL543_RS15785 PF02861 Clp amino terminal domain, pathogenicity island component AL543_RS15785 PF07724 AAA domain (Cdc48 subfamily) AL543_RS15785 PF10431 C-terminal, D2-small domain, of ClpB protein AL543_RS15785 PF00004 ATPase family associated with various cellular activities (AAA) AL543_RS15785 PF17871 AAA lid domain AL543_RS15790 PF06826 Predicted Permease Membrane Region AL543_RS15790 PF02080 TrkA-C domain AL543_RS15795 PF00462 Glutaredoxin AL543_RS15805 PF00465 Iron-containing alcohol dehydrogenase AL543_RS15810 PF01380 SIS domain AL543_RS15810 PF01418 Helix-turn-helix domain, rpiR family AL543_RS15820 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL543_RS15830 PF03956 Lysine exporter LysO AL543_RS15840 PF04993 TfoX N-terminal domain AL543_RS15840 PF04994 TfoX C-terminal domain AL543_RS15860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS15860 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS15860 PF00989 PAS fold AL543_RS15870 PF01609 Transposase DDE domain AL543_RS15870 PF13006 Insertion element 4 transposase N-terminal AL543_RS15875 PF00266 Aminotransferase class-V AL543_RS15890 PF08443 RimK-like ATP-grasp domain AL543_RS15890 PF18030 RimK PreATP-grasp domain AL543_RS15895 PF08003 Protein of unknown function (DUF1698) AL543_RS15900 PF13649 Methyltransferase domain AL543_RS15905 PF01904 Protein of unknown function DUF72 AL543_RS15910 PF00152 tRNA synthetases class II (D, K and N) AL543_RS15910 PF02938 GAD domain AL543_RS15910 PF01336 OB-fold nucleic acid binding domain AL543_RS15915 PF00265 Thymidine kinase AL543_RS15920 PF00375 Sodium:dicarboxylate symporter family AL543_RS15925 PF00290 Tryptophan synthase alpha chain AL543_RS15930 PF00291 Pyridoxal-phosphate dependent enzyme AL543_RS15935 PF00218 Indole-3-glycerol phosphate synthase AL543_RS15935 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL543_RS15940 PF02885 Glycosyl transferase family, helical bundle domain AL543_RS15940 PF00591 Glycosyl transferase family, a/b domain AL543_RS15945 PF00117 Glutamine amidotransferase class-I AL543_RS15950 PF00425 chorismate binding enzyme AL543_RS15950 PF04715 Anthranilate synthase component I, N terminal region AL543_RS15955 PF08056 Tryptophan operon leader peptide AL543_RS15960 PF02811 PHP domain AL543_RS15965 PF01300 Telomere recombination AL543_RS15970 PF01479 S4 domain AL543_RS15970 PF00849 RNA pseudouridylate synthase AL543_RS15975 PF00005 ABC transporter AL543_RS15975 PF00664 ABC transporter transmembrane region AL543_RS15980 PF00664 ABC transporter transmembrane region AL543_RS15980 PF00005 ABC transporter AL543_RS15985 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_RS15995 PF00266 Aminotransferase class-V AL543_RS16000 PF08448 PAS fold AL543_RS16000 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS16005 PF02698 DUF218 domain AL543_RS16015 PF03949 Malic enzyme, NAD binding domain AL543_RS16015 PF00390 Malic enzyme, N-terminal domain AL543_RS16025 PF01259 SAICAR synthetase AL543_RS16045 PF13488 Glycine zipper AL543_RS16045 PF00691 OmpA family AL543_RS16060 PF01565 FAD binding domain AL543_RS16060 PF13183 4Fe-4S dicluster domain AL543_RS16060 PF02913 FAD linked oxidases, C-terminal domain AL543_RS16065 PF04191 Phospholipid methyltransferase AL543_RS16080 PF00221 Aromatic amino acid lyase AL543_RS16085 PF17392 Urocanase C-terminal domain AL543_RS16085 PF17391 Urocanase N-terminal domain AL543_RS16085 PF01175 Urocanase Rossmann-like domain AL543_RS16090 PF00491 Arginase family AL543_RS16095 PF01979 Amidohydrolase family AL543_RS16100 PF00392 Bacterial regulatory proteins, gntR family AL543_RS16100 PF07702 UTRA domain AL543_RS16110 PF04269 Protein of unknown function, DUF440 AL543_RS16115 PF09285 Elongation factor P, C-terminal AL543_RS16115 PF01132 Elongation factor P (EF-P) OB domain AL543_RS16115 PF08207 Elongation factor P (EF-P) KOW-like domain AL543_RS16125 PF00563 EAL domain AL543_RS16125 PF12792 CSS motif domain associated with EAL AL543_RS16130 PF00136 DNA polymerase family B AL543_RS16130 PF03104 DNA polymerase family B, exonuclease domain AL543_RS16135 PF00072 Response regulator receiver domain AL543_RS16135 PF00196 Bacterial regulatory proteins, luxR family AL543_RS16140 PF08459 UvrC Helix-hairpin-helix N-terminal AL543_RS16140 PF02151 UvrB/uvrC motif AL543_RS16140 PF01541 GIY-YIG catalytic domain AL543_RS16145 PF01066 CDP-alcohol phosphatidyltransferase AL543_RS16170 PF01797 Transposase IS200 like AL543_RS16180 PF13358 DDE superfamily endonuclease AL543_RS16190 PF00583 Acetyltransferase (GNAT) family AL543_RS16195 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL543_RS16195 PF01409 tRNA synthetases class II core domain (F) AL543_RS16200 PF03484 tRNA synthetase B5 domain AL543_RS16200 PF03147 Ferredoxin-fold anticodon binding domain AL543_RS16200 PF01588 Putative tRNA binding domain AL543_RS16200 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL543_RS16200 PF03483 B3/4 domain AL543_RS16205 PF00216 Bacterial DNA-binding protein AL543_RS16220 PF05724 Thiopurine S-methyltransferase (TPMT) AL543_RS16225 PF02222 ATP-grasp domain AL543_RS16235 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL543_RS16235 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL543_RS16240 PF04172 LrgB-like family AL543_RS16245 PF03788 LrgA family AL543_RS16250 PF08411 Exonuclease C-terminal AL543_RS16250 PF00929 Exonuclease AL543_RS16255 PF00375 Sodium:dicarboxylate symporter family AL543_RS16260 PF01641 SelR domain AL543_RS16265 PF02277 Phosphoribosyltransferase AL543_RS16270 PF02654 Cobalamin-5-phosphate synthase AL543_RS16275 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL543_RS16285 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL543_RS16290 PF01032 FecCD transport family AL543_RS16295 PF00005 ABC transporter AL543_RS16310 PF00672 HAMP domain AL543_RS16310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS16310 PF17200 Single Cache domain 2 AL543_RS16325 PF00994 Probable molybdopterin binding domain AL543_RS16335 PF00111 2Fe-2S iron-sulfur cluster binding domain AL543_RS16335 PF00175 Oxidoreductase NAD-binding domain AL543_RS16335 PF00970 Oxidoreductase FAD-binding domain AL543_RS16340 PF00268 Ribonucleotide reductase, small chain AL543_RS16345 PF02867 Ribonucleotide reductase, barrel domain AL543_RS16345 PF00317 Ribonucleotide reductase, all-alpha domain AL543_RS16345 PF03477 ATP cone domain AL543_RS16360 PF03989 DNA gyrase C-terminal domain, beta-propeller AL543_RS16360 PF00521 DNA gyrase/topoisomerase IV, subunit A AL543_RS16370 PF02335 Cytochrome c552 AL543_RS16380 PF13247 4Fe-4S dicluster domain AL543_RS16385 PF03916 Polysulphide reductase, NrfD AL543_RS16390 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL543_RS16390 PF01578 Cytochrome C assembly protein AL543_RS16395 PF08534 Redoxin AL543_RS16400 PF03918 Cytochrome C biogenesis protein AL543_RS16410 PF00313 'Cold-shock' DNA-binding domain AL543_RS16415 PF00581 Rhodanese-like domain AL543_RS16415 PF17773 UPF0176 acylphosphatase like domain AL543_RS16450 PF00925 GTP cyclohydrolase II AL543_RS16480 PF05951 Bacterial protein of unknown function (DUF882) AL543_RS16485 PF00753 Metallo-beta-lactamase superfamily AL543_RS16500 PF03480 Bacterial extracellular solute-binding protein, family 7 AL543_RS16510 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL543_RS16520 PF17200 Single Cache domain 2 AL543_RS16520 PF07730 Histidine kinase AL543_RS16525 PF00072 Response regulator receiver domain AL543_RS16525 PF00196 Bacterial regulatory proteins, luxR family AL543_RS16530 PF01047 MarR family AL543_RS16535 PF02028 BCCT, betaine/carnitine/choline family transporter AL543_RS16540 PF01522 Polysaccharide deacetylase AL543_RS16545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL543_RS16550 PF02378 Phosphotransferase system, EIIC AL543_RS16555 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL543_RS16560 PF02056 Family 4 glycosyl hydrolase AL543_RS16560 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL543_RS16565 PF04794 YdjC-like protein AL543_RS16570 PF00356 Bacterial regulatory proteins, lacI family AL543_RS16575 PF13506 Glycosyl transferase family 21 AL543_RS16580 PF04349 Periplasmic glucan biosynthesis protein, MdoG AL543_RS16585 PF02743 Cache domain AL543_RS16585 PF00672 HAMP domain AL543_RS16585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS16600 PF00155 Aminotransferase class I and II AL543_RS16605 PF01966 HD domain AL543_RS16605 PF00672 HAMP domain AL543_RS16610 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_RS16610 PF12464 Maltose acetyltransferase AL543_RS16615 PF08543 Phosphomethylpyrimidine kinase AL543_RS16620 PF01336 OB-fold nucleic acid binding domain AL543_RS16620 PF00152 tRNA synthetases class II (D, K and N) AL543_RS16625 PF17200 Single Cache domain 2 AL543_RS16625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS16625 PF00672 HAMP domain AL543_RS16630 PF01242 6-pyruvoyl tetrahydropterin synthase AL543_RS16635 PF03315 Serine dehydratase beta chain AL543_RS16635 PF03313 Serine dehydratase alpha chain AL543_RS16640 PF03222 Tryptophan/tyrosine permease family AL543_RS16645 PF00293 NUDIX domain AL543_RS16650 PF04715 Anthranilate synthase component I, N terminal region AL543_RS16650 PF00425 chorismate binding enzyme AL543_RS16665 PF04317 YcjX-like family, DUF463 AL543_RS16670 PF05128 Domain of unknown function (DUF697) AL543_RS16675 PF18024 Helix-turn-helix domain AL543_RS16675 PF00158 Sigma-54 interaction domain AL543_RS16680 PF13302 Acetyltransferase (GNAT) domain AL543_RS16695 PF00892 EamA-like transporter family AL543_RS16700 PF01168 Alanine racemase, N-terminal domain AL543_RS16700 PF00842 Alanine racemase, C-terminal domain AL543_RS16705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS16705 PF12729 Four helix bundle sensory module for signal transduction AL543_RS16705 PF00672 HAMP domain AL543_RS16710 PF00939 Sodium:sulfate symporter transmembrane region AL543_RS16715 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS16715 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_RS16715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS16720 PF02954 Bacterial regulatory protein, Fis family AL543_RS16720 PF00158 Sigma-54 interaction domain AL543_RS16720 PF00072 Response regulator receiver domain AL543_RS16730 PF06629 MltA-interacting protein MipA AL543_RS16735 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS16735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS16735 PF00672 HAMP domain AL543_RS16740 PF00486 Transcriptional regulatory protein, C terminal AL543_RS16740 PF00072 Response regulator receiver domain AL543_RS16760 PF13358 DDE superfamily endonuclease AL543_RS16770 PF13407 Periplasmic binding protein domain AL543_RS16775 PF00005 ABC transporter AL543_RS16780 PF02653 Branched-chain amino acid transport system / permease component AL543_RS16790 PF01970 Tripartite tricarboxylate transporter TctA family AL543_RS16820 PF00285 Citrate synthase, C-terminal domain AL543_RS16825 PF00330 Aconitase family (aconitate hydratase) AL543_RS16825 PF00694 Aconitase C-terminal domain AL543_RS16830 PF04303 PrpF protein AL543_RS16835 PF00501 AMP-binding enzyme AL543_RS16835 PF13193 AMP-binding enzyme C-terminal domain AL543_RS16835 PF16177 Acetyl-coenzyme A synthetase N-terminus AL543_RS16850 PF07687 Peptidase dimerisation domain AL543_RS16850 PF01546 Peptidase family M20/M25/M40 AL543_RS16855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_RS16860 PF04209 homogentisate 1,2-dioxygenase AL543_RS16870 PF02798 Glutathione S-transferase, N-terminal domain AL543_RS16870 PF14497 Glutathione S-transferase, C-terminal domain AL543_RS16875 PF00072 Response regulator receiver domain AL543_RS16880 PF00072 Response regulator receiver domain AL543_RS16880 PF00672 HAMP domain AL543_RS16880 PF01627 Hpt domain AL543_RS16880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL543_RS16880 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS16880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS16885 PF00462 Glutaredoxin AL543_RS16885 PF08534 Redoxin AL543_RS16890 PF13358 DDE superfamily endonuclease AL543_RS16895 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS16900 PF17785 PUA-like domain AL543_RS16900 PF10672 S-adenosylmethionine-dependent methyltransferase AL543_RS16905 PF00672 HAMP domain AL543_RS16905 PF12729 Four helix bundle sensory module for signal transduction AL543_RS16905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS16910 PF00708 Acylphosphatase AL543_RS16915 PF04358 DsrC like protein AL543_RS16920 PF01027 Inhibitor of apoptosis-promoting Bax1 AL543_RS16925 PF00005 ABC transporter AL543_RS16930 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS16935 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS16940 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_RS16945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL543_RS16945 PF14824 Sirohaem biosynthesis protein central AL543_RS16945 PF10414 Sirohaem synthase dimerisation region AL543_RS16955 PF04055 Radical SAM superfamily AL543_RS16960 PF06508 Queuosine biosynthesis protein QueC AL543_RS16980 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS16980 PF00563 EAL domain AL543_RS16980 PF03707 Bacterial signalling protein N terminal repeat AL543_RS16990 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS16990 PF17158 Membrane-associated sensor, integral membrane domain AL543_RS16995 PF00012 Hsp70 protein AL543_RS17000 PF00012 Hsp70 protein AL543_RS17010 PF00563 EAL domain AL543_RS17010 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS17010 PF03707 Bacterial signalling protein N terminal repeat AL543_RS17010 PF13188 PAS domain AL543_RS17030 PF00271 Helicase conserved C-terminal domain AL543_RS17030 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL543_RS17030 PF00270 DEAD/DEAH box helicase AL543_RS17030 PF11898 Domain of unknown function (DUF3418) AL543_RS17030 PF04408 Helicase associated domain (HA2) AL543_RS17040 PF03738 Glutathionylspermidine synthase preATP-grasp AL543_RS17055 PF13358 DDE superfamily endonuclease AL543_RS17085 PF01979 Amidohydrolase family AL543_RS17090 PF00012 Hsp70 protein AL543_RS17095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS17095 PF03466 LysR substrate binding domain AL543_RS17100 PF07690 Major Facilitator Superfamily AL543_RS17105 PF00893 Small Multidrug Resistance protein AL543_RS17110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS17110 PF00672 HAMP domain AL543_RS17115 PF13426 PAS domain AL543_RS17115 PF08447 PAS fold AL543_RS17115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS17120 PF00270 DEAD/DEAH box helicase AL543_RS17120 PF00271 Helicase conserved C-terminal domain AL543_RS17130 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL543_RS17140 PF01266 FAD dependent oxidoreductase AL543_RS17145 PF00582 Universal stress protein family AL543_RS17150 PF03401 Tripartite tricarboxylate transporter family receptor AL543_RS17165 PF00171 Aldehyde dehydrogenase family AL543_RS17175 PF01613 Flavin reductase like domain AL543_RS17180 PF01047 MarR family AL543_RS17185 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL543_RS17200 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL543_RS17205 PF03328 HpcH/HpaI aldolase/citrate lyase family AL543_RS17210 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL543_RS17215 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL543_RS17220 PF00171 Aldehyde dehydrogenase family AL543_RS17235 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AL543_RS17240 PF00171 Aldehyde dehydrogenase family AL543_RS17250 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AL543_RS17255 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL543_RS17260 PF05638 Type VI secretion system effector, Hcp AL543_RS17265 PF16671 Actin cross-linking domain AL543_RS17265 PF04717 Type VI secretion system, phage-baseplate injector AL543_RS17285 PF01810 LysE type translocator AL543_RS17290 PF01235 Sodium:alanine symporter family AL543_RS17305 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS17305 PF17155 Gammaproteobacterial periplasmic sensor domain AL543_RS17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS17310 PF00989 PAS fold AL543_RS17310 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS17320 PF00196 Bacterial regulatory proteins, luxR family AL543_RS17320 PF00072 Response regulator receiver domain AL543_RS17325 PF00171 Aldehyde dehydrogenase family AL543_RS17330 PF13416 Bacterial extracellular solute-binding protein AL543_RS17335 PF13416 Bacterial extracellular solute-binding protein AL543_RS17340 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS17345 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS17350 PF08402 TOBE domain AL543_RS17350 PF00005 ABC transporter AL543_RS17355 PF13358 DDE superfamily endonuclease AL543_RS17375 PF01171 PP-loop family AL543_RS17380 PF00582 Universal stress protein family AL543_RS17385 PF13545 Crp-like helix-turn-helix domain AL543_RS17385 PF00027 Cyclic nucleotide-binding domain AL543_RS17400 PF00403 Heavy-metal-associated domain AL543_RS17410 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL543_RS17410 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL543_RS17425 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL543_RS17440 PF00072 Response regulator receiver domain AL543_RS17440 PF09308 LuxQ, periplasmic AL543_RS17440 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS17440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS17475 PF06303 MatP N-terminal domain AL543_RS17475 PF17414 MatP C-terminal ribbon-helix-helix domain AL543_RS17480 PF13654 AAA domain AL543_RS17480 PF05362 Lon protease (S16) C-terminal proteolytic domain AL543_RS17485 PF07977 FabA-like domain AL543_RS17490 PF04957 Ribosome modulation factor AL543_RS17500 PF12848 ABC transporter AL543_RS17500 PF00005 ABC transporter AL543_RS17500 PF16326 ABC transporter C-terminal domain AL543_RS17510 PF10672 S-adenosylmethionine-dependent methyltransferase AL543_RS17510 PF02926 THUMP domain AL543_RS17510 PF01170 Putative RNA methylase family UPF0020 AL543_RS17515 PF07126 Cell-division protein ZapC AL543_RS17520 PF01180 Dihydroorotate dehydrogenase AL543_RS17525 PF05088 Bacterial NAD-glutamate dehydrogenase AL543_RS17535 PF01433 Peptidase family M1 domain AL543_RS17535 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL543_RS17535 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL543_RS17545 PF17804 Tail specific protease N-terminal domain AL543_RS17545 PF11818 C-terminal domain of tail specific protease (DUF3340) AL543_RS17545 PF00595 PDZ domain AL543_RS17545 PF03572 Peptidase family S41 AL543_RS17550 PF04352 ProQ/FINO family AL543_RS17550 PF17516 ProQ C-terminal domain AL543_RS17555 PF13185 GAF domain AL543_RS17565 PF04403 Paraquat-inducible protein A AL543_RS17570 PF02470 MlaD protein AL543_RS17575 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL543_RS17575 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL543_RS17575 PF01189 16S rRNA methyltransferase RsmB/F AL543_RS17580 PF17783 CvfB-like winged helix domain AL543_RS17580 PF13509 S1 domain AL543_RS17595 PF00793 DAHP synthetase I family AL543_RS17600 PF04461 Protein of unknown function (DUF520) AL543_RS17605 PF02146 Sir2 family AL543_RS17610 PF00909 Ammonium Transporter Family AL543_RS17630 PF13247 4Fe-4S dicluster domain AL543_RS17635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL543_RS17635 PF01568 Molydopterin dinucleotide binding domain AL543_RS17635 PF00384 Molybdopterin oxidoreductase AL543_RS17645 PF02613 Nitrate reductase delta subunit AL543_RS17665 PF02634 FdhD/NarQ family AL543_RS17670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS17670 PF00672 HAMP domain AL543_RS17670 PF02743 Cache domain AL543_RS17675 PF12848 ABC transporter AL543_RS17675 PF00005 ABC transporter AL543_RS17680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS17680 PF00989 PAS fold AL543_RS17680 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS17685 PF00158 Sigma-54 interaction domain AL543_RS17685 PF00072 Response regulator receiver domain AL543_RS17685 PF02954 Bacterial regulatory protein, Fis family AL543_RS17690 PF12849 PBP superfamily domain AL543_RS17695 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS17700 PF08402 TOBE domain AL543_RS17700 PF00005 ABC transporter AL543_RS17705 PF12804 MobA-like NTP transferase domain AL543_RS17710 PF03453 MoeA N-terminal region (domain I and II) AL543_RS17710 PF03454 MoeA C-terminal region (domain IV) AL543_RS17710 PF00994 Probable molybdopterin binding domain AL543_RS17720 PF00480 ROK family AL543_RS17725 PF03942 DTW domain AL543_RS17735 PF00672 HAMP domain AL543_RS17735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS17735 PF12729 Four helix bundle sensory module for signal transduction AL543_RS17740 PF00877 NlpC/P60 family AL543_RS17750 PF03881 Fructosamine kinase AL543_RS17760 PF01554 MatE AL543_RS17770 PF01068 ATP dependent DNA ligase domain AL543_RS17770 PF14743 DNA ligase OB-like domain AL543_RS17785 PF02472 Biopolymer transport protein ExbD/TolR AL543_RS17790 PF01618 MotA/TolQ/ExbB proton channel family AL543_RS17795 PF01618 MotA/TolQ/ExbB proton channel family AL543_RS17810 PF13416 Bacterial extracellular solute-binding protein AL543_RS17815 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS17820 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS17825 PF00005 ABC transporter AL543_RS17825 PF17912 MalK OB fold domain AL543_RS17830 PF08220 DeoR-like helix-turn-helix domain AL543_RS17830 PF00455 DeoR C terminal sensor domain AL543_RS17835 PF03009 Glycerophosphoryl diester phosphodiesterase family AL543_RS17840 PF04074 YhcH/YjgK/YiaL AL543_RS17850 PF00356 Bacterial regulatory proteins, lacI family AL543_RS17855 PF00232 Glycosyl hydrolase family 1 AL543_RS17860 PF00141 Peroxidase AL543_RS17865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS17865 PF03466 LysR substrate binding domain AL543_RS17885 PF12704 MacB-like periplasmic core domain AL543_RS17885 PF02687 FtsX-like permease family AL543_RS17890 PF00005 ABC transporter AL543_RS17890 PF02687 FtsX-like permease family AL543_RS17890 PF12704 MacB-like periplasmic core domain AL543_RS17895 PF00005 ABC transporter AL543_RS17895 PF02687 FtsX-like permease family AL543_RS17895 PF12704 MacB-like periplasmic core domain AL543_RS17900 PF00268 Ribonucleotide reductase, small chain AL543_RS17905 PF02867 Ribonucleotide reductase, barrel domain AL543_RS17905 PF08343 Ribonucleotide reductase N-terminal AL543_RS17905 PF00317 Ribonucleotide reductase, all-alpha domain AL543_RS17910 PF07972 NrdI Flavodoxin like AL543_RS17915 PF00462 Glutaredoxin AL543_RS17920 PF02657 Fe-S metabolism associated domain AL543_RS17925 PF00266 Aminotransferase class-V AL543_RS17930 PF01458 Uncharacterized protein family (UPF0051) AL543_RS17935 PF00005 ABC transporter AL543_RS17940 PF01458 Uncharacterized protein family (UPF0051) AL543_RS17945 PF01521 Iron-sulphur cluster biosynthesis AL543_RS17955 PF00206 Lyase AL543_RS17955 PF10415 Fumarase C C-terminus AL543_RS17975 PF04266 ASCH domain AL543_RS17980 PF00080 Copper/zinc superoxide dismutase (SODC) AL543_RS17990 PF00199 Catalase AL543_RS17990 PF06628 Catalase-related immune-responsive AL543_RS18000 PF13322 Domain of unknown function (DUF4092) AL543_RS18000 PF17291 N-terminal domain of M60-like peptidases AL543_RS18000 PF13402 Peptidase M60, enhancin and enhancin-like AL543_RS18010 PF01263 Aldose 1-epimerase AL543_RS18015 PF10509 Galactokinase galactose-binding signature AL543_RS18015 PF08544 GHMP kinases C terminal AL543_RS18015 PF00288 GHMP kinases N terminal domain AL543_RS18020 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL543_RS18020 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL543_RS18025 PF07690 Major Facilitator Superfamily AL543_RS18040 PF00072 Response regulator receiver domain AL543_RS18040 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS18055 PF00072 Response regulator receiver domain AL543_RS18055 PF01584 CheW-like domain AL543_RS18065 PF00072 Response regulator receiver domain AL543_RS18065 PF12431 Transcriptional regulator AL543_RS18070 PF00989 PAS fold AL543_RS18070 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL543_RS18070 PF17203 Single cache domain 3 AL543_RS18070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS18085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL543_RS18105 PF04204 Homoserine O-succinyltransferase AL543_RS18120 PF05971 RNA methyltransferase AL543_RS18125 PF01863 Protein of unknown function DUF45 AL543_RS18135 PF03466 LysR substrate binding domain AL543_RS18135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS18160 PF02321 Outer membrane efflux protein AL543_RS18165 PF05736 OprF membrane domain AL543_RS18165 PF00691 OmpA family AL543_RS18175 PF03435 Saccharopine dehydrogenase NADP binding domain AL543_RS18175 PF16653 Saccharopine dehydrogenase C-terminal domain AL543_RS18180 PF00202 Aminotransferase class-III AL543_RS18190 PF13358 DDE superfamily endonuclease AL543_RS18195 PF06965 Na+/H+ antiporter 1 AL543_RS18205 PF02687 FtsX-like permease family AL543_RS18205 PF12704 MacB-like periplasmic core domain AL543_RS18210 PF00005 ABC transporter AL543_RS18215 PF01554 MatE AL543_RS18220 PF13460 NAD(P)H-binding AL543_RS18220 PF11066 Protein of unknown function (DUF2867) AL543_RS18230 PF07690 Major Facilitator Superfamily AL543_RS18235 PF00849 RNA pseudouridylate synthase AL543_RS18235 PF01479 S4 domain AL543_RS18240 PF00271 Helicase conserved C-terminal domain AL543_RS18240 PF04851 Type III restriction enzyme, res subunit AL543_RS18250 PF00072 Response regulator receiver domain AL543_RS18250 PF00486 Transcriptional regulatory protein, C terminal AL543_RS18255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS18260 PF01386 Ribosomal L25p family AL543_RS18305 PF13533 Biotin-lipoyl like AL543_RS18310 PF00873 AcrB/AcrD/AcrF family AL543_RS18345 PF12793 Sugar transport-related sRNA regulator N-term AL543_RS18345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_RS18355 PF08453 Peptidase family M9 N-terminal AL543_RS18355 PF01752 Collagenase AL543_RS18355 PF04151 Bacterial pre-peptidase C-terminal domain AL543_RS18365 PF03707 Bacterial signalling protein N terminal repeat AL543_RS18365 PF00563 EAL domain AL543_RS18365 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS18370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS18370 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS18370 PF00072 Response regulator receiver domain AL543_RS18370 PF09456 RcsC Alpha-Beta-Loop (ABL) AL543_RS18375 PF00571 CBS domain AL543_RS18375 PF01769 Divalent cation transporter AL543_RS18375 PF03448 MgtE intracellular N domain AL543_RS18385 PF03222 Tryptophan/tyrosine permease family AL543_RS18390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL543_RS18395 PF00005 ABC transporter AL543_RS18410 PF06945 Protein of unknown function (DUF1289) AL543_RS18420 PF13416 Bacterial extracellular solute-binding protein AL543_RS18425 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS18430 PF00005 ABC transporter AL543_RS18435 PF01066 CDP-alcohol phosphatidyltransferase AL543_RS18440 PF00849 RNA pseudouridylate synthase AL543_RS18445 PF00209 Sodium:neurotransmitter symporter family AL543_RS18450 PF13396 Phospholipase_D-nuclease N-terminal AL543_RS18450 PF13091 PLD-like domain AL543_RS18455 PF01053 Cys/Met metabolism PLP-dependent enzyme AL543_RS18460 PF03352 Methyladenine glycosylase AL543_RS18465 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AL543_RS18465 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL543_RS18480 PF04012 PspA/IM30 family AL543_RS18485 PF02954 Bacterial regulatory protein, Fis family AL543_RS18485 PF00158 Sigma-54 interaction domain AL543_RS18490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_RS18495 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS18500 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS18500 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_RS18505 PF00005 ABC transporter AL543_RS18505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_RS18510 PF00005 ABC transporter AL543_RS18525 PF02833 DHHA2 domain AL543_RS18525 PF01368 DHH family AL543_RS18540 PF03193 RsgA GTPase AL543_RS18550 PF01797 Transposase IS200 like AL543_RS18555 PF01797 Transposase IS200 like AL543_RS18560 PF18364 Molybdopterin oxidoreductase N-terminal domain AL543_RS18560 PF01568 Molydopterin dinucleotide binding domain AL543_RS18560 PF00384 Molybdopterin oxidoreductase AL543_RS18565 PF03264 NapC/NirT cytochrome c family, N-terminal region AL543_RS18570 PF06796 Periplasmic nitrate reductase protein NapE AL543_RS18575 PF01226 Formate/nitrite transporter AL543_RS18590 PF01370 NAD dependent epimerase/dehydratase family AL543_RS18595 PF02698 DUF218 domain AL543_RS18605 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS18605 PF03707 Bacterial signalling protein N terminal repeat AL543_RS18605 PF00563 EAL domain AL543_RS18610 PF04279 Intracellular septation protein A AL543_RS18615 PF03061 Thioesterase superfamily AL543_RS18620 PF03795 YCII-related domain AL543_RS18630 PF01717 Cobalamin-independent synthase, Catalytic domain AL543_RS18630 PF08267 Cobalamin-independent synthase, N-terminal domain AL543_RS18635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS18635 PF03466 LysR substrate binding domain AL543_RS18650 PF05193 Peptidase M16 inactive domain AL543_RS18650 PF00675 Insulinase (Peptidase family M16) AL543_RS18655 PF00989 PAS fold AL543_RS18655 PF01590 GAF domain AL543_RS18655 PF00563 EAL domain AL543_RS18655 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS18660 PF08497 Radical SAM N-terminal AL543_RS18660 PF04055 Radical SAM superfamily AL543_RS18660 PF11842 Domain of unknown function (DUF3362) AL543_RS18665 PF01810 LysE type translocator AL543_RS18670 PF01037 Lrp/AsnC ligand binding domain AL543_RS18675 PF16330 MukB hinge domain AL543_RS18675 PF04310 MukB N-terminal AL543_RS18680 PF04288 MukE-like family AL543_RS18685 PF17192 MukF middle domain AL543_RS18685 PF17193 MukF C-terminal domain AL543_RS18685 PF03882 MukF winged-helix domain AL543_RS18690 PF13847 Methyltransferase domain AL543_RS18695 PF02698 DUF218 domain AL543_RS18700 PF00486 Transcriptional regulatory protein, C terminal AL543_RS18700 PF00072 Response regulator receiver domain AL543_RS18705 PF02613 Nitrate reductase delta subunit AL543_RS18715 PF00356 Bacterial regulatory proteins, lacI family AL543_RS18720 PF04993 TfoX N-terminal domain AL543_RS18720 PF04994 TfoX C-terminal domain AL543_RS18740 PF00534 Glycosyl transferases group 1 AL543_RS18740 PF08323 Starch synthase catalytic domain AL543_RS18745 PF00483 Nucleotidyl transferase AL543_RS18750 PF01797 Transposase IS200 like AL543_RS18755 PF01751 Toprim domain AL543_RS18755 PF01131 DNA topoisomerase AL543_RS18755 PF08272 Topoisomerase I zinc-ribbon-like AL543_RS18755 PF01396 Topoisomerase DNA binding C4 zinc finger AL543_RS18760 PF10692 Protein of unknown function (DUF2498) AL543_RS18765 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL543_RS18775 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AL543_RS18780 PF04376 Arginine-tRNA-protein transferase, N terminus AL543_RS18780 PF04377 Arginine-tRNA-protein transferase, C terminus AL543_RS18785 PF01176 Translation initiation factor 1A / IF-1 AL543_RS18790 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL543_RS18790 PF07055 Enoyl reductase FAD binding domain AL543_RS18790 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL543_RS18795 PF09317 Domain of unknown function (DUF1974) AL543_RS18795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL543_RS18795 PF02770 Acyl-CoA dehydrogenase, middle domain AL543_RS18795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL543_RS18800 PF16295 Tetracyclin repressor-like, C-terminal domain AL543_RS18800 PF00440 Bacterial regulatory proteins, tetR family AL543_RS18810 PF07383 Protein of unknown function (DUF1496) AL543_RS18815 PF00171 Aldehyde dehydrogenase family AL543_RS18820 PF00440 Bacterial regulatory proteins, tetR family AL543_RS18820 PF08362 YcdC-like protein, C-terminal region AL543_RS18825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL543_RS18830 PF00873 AcrB/AcrD/AcrF family AL543_RS18835 PF13358 DDE superfamily endonuclease AL543_RS18840 PF00563 EAL domain AL543_RS18840 PF00196 Bacterial regulatory proteins, luxR family AL543_RS18845 PF03575 Peptidase family S51 AL543_RS18850 PF01546 Peptidase family M20/M25/M40 AL543_RS18850 PF07687 Peptidase dimerisation domain AL543_RS18855 PF03606 C4-dicarboxylate anaerobic carrier AL543_RS18860 PF01418 Helix-turn-helix domain, rpiR family AL543_RS18860 PF01380 SIS domain AL543_RS18890 PF00437 Type II/IV secretion system protein AL543_RS18920 PF04972 BON domain AL543_RS18920 PF00263 Bacterial type II and III secretion system protein AL543_RS18920 PF13629 Pilus formation protein N terminal region AL543_RS18950 PF02311 AraC-like ligand binding domain AL543_RS18950 PF12833 Helix-turn-helix domain AL543_RS18955 PF01055 Glycosyl hydrolases family 31 AL543_RS18955 PF16338 Domain of unknown function (DUF4968) AL543_RS18955 PF17137 Domain of unknown function (DUF5110) AL543_RS18955 PF13802 Galactose mutarotase-like AL543_RS18965 PF04055 Radical SAM superfamily AL543_RS18965 PF13186 Iron-sulfur cluster-binding domain AL543_RS18970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS18970 PF03466 LysR substrate binding domain AL543_RS18985 PF01970 Tripartite tricarboxylate transporter TctA family AL543_RS18990 PF16347 Domain of unknown function (DUF4976) AL543_RS18990 PF00884 Sulfatase AL543_RS19010 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL543_RS19010 PF07971 Glycosyl hydrolase family 92 AL543_RS19020 PF07971 Glycosyl hydrolase family 92 AL543_RS19020 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL543_RS19025 PF07971 Glycosyl hydrolase family 92 AL543_RS19025 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL543_RS19035 PF07971 Glycosyl hydrolase family 92 AL543_RS19035 PF17678 Glycosyl hydrolase family 92 N-terminal domain AL543_RS19045 PF00155 Aminotransferase class I and II AL543_RS19045 PF00392 Bacterial regulatory proteins, gntR family AL543_RS19055 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL543_RS19065 PF12833 Helix-turn-helix domain AL543_RS19070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL543_RS19070 PF02378 Phosphotransferase system, EIIC AL543_RS19070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL543_RS19075 PF01238 Phosphomannose isomerase type I AL543_RS19080 PF06610 L-alanine exporter AL543_RS19085 PF00072 Response regulator receiver domain AL543_RS19085 PF09308 LuxQ, periplasmic AL543_RS19085 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS19085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS19095 PF02445 Quinolinate synthetase A protein AL543_RS19105 PF00691 OmpA family AL543_RS19110 PF07676 WD40-like Beta Propeller Repeat AL543_RS19110 PF04052 TolB amino-terminal domain AL543_RS19120 PF02472 Biopolymer transport protein ExbD/TolR AL543_RS19125 PF01618 MotA/TolQ/ExbB proton channel family AL543_RS19130 PF03061 Thioesterase superfamily AL543_RS19140 PF08173 Membrane bound YbgT-like protein AL543_RS19145 PF02322 Cytochrome bd terminal oxidase subunit II AL543_RS19150 PF01654 Cytochrome bd terminal oxidase subunit I AL543_RS19155 PF05491 RuvB C-terminal winged helix domain AL543_RS19155 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL543_RS19155 PF17864 RuvB AAA lid domain AL543_RS19160 PF07499 RuvA, C-terminal domain AL543_RS19160 PF01330 RuvA N terminal domain AL543_RS19165 PF02075 Crossover junction endodeoxyribonuclease RuvC AL543_RS19170 PF09190 DALR domain AL543_RS19170 PF01406 tRNA synthetases class I (C) catalytic domain AL543_RS19175 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL543_RS19180 PF00149 Calcineurin-like phosphoesterase AL543_RS19185 PF08668 HDOD domain AL543_RS19185 PF00563 EAL domain AL543_RS19190 PF02810 SEC-C motif AL543_RS19195 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL543_RS19210 PF06733 DEAD_2 AL543_RS19210 PF13307 Helicase C-terminal domain AL543_RS19215 PF01925 Sulfite exporter TauE/SafE AL543_RS19220 PF07445 Primosomal replication protein priC AL543_RS19225 PF10689 Protein of unknown function (DUF2496) AL543_RS19230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS19230 PF00672 HAMP domain AL543_RS19235 PF03372 Endonuclease/Exonuclease/phosphatase family AL543_RS19240 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS19245 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS19250 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL543_RS19255 PF00005 ABC transporter AL543_RS19265 PF02901 Pyruvate formate lyase-like AL543_RS19265 PF01228 Glycine radical AL543_RS19275 PF00672 HAMP domain AL543_RS19275 PF12729 Four helix bundle sensory module for signal transduction AL543_RS19275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS19280 PF04055 Radical SAM superfamily AL543_RS19290 PF03887 YfbU domain AL543_RS19295 PF06798 PrkA serine protein kinase C-terminal domain AL543_RS19295 PF08298 PrkA AAA domain AL543_RS19300 PF04285 Protein of unknown function (DUF444) AL543_RS19305 PF04293 SpoVR like protein AL543_RS19310 PF00367 phosphotransferase system, EIIB AL543_RS19310 PF02378 Phosphotransferase system, EIIC AL543_RS19315 PF00072 Response regulator receiver domain AL543_RS19315 PF00486 Transcriptional regulatory protein, C terminal AL543_RS19320 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS19320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS19320 PF08521 Two-component sensor kinase N-terminal AL543_RS19330 PF01609 Transposase DDE domain AL543_RS19330 PF13006 Insertion element 4 transposase N-terminal AL543_RS19335 PF02348 Cytidylyltransferase AL543_RS19340 PF03966 Trm112p-like protein AL543_RS19345 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL543_RS19350 PF00005 ABC transporter AL543_RS19350 PF00664 ABC transporter transmembrane region AL543_RS19355 PF00753 Metallo-beta-lactamase superfamily AL543_RS19355 PF13567 Domain of unknown function (DUF4131) AL543_RS19355 PF03772 Competence protein AL543_RS19365 PF12704 MacB-like periplasmic core domain AL543_RS19365 PF02687 FtsX-like permease family AL543_RS19370 PF00005 ABC transporter AL543_RS19375 PF12704 MacB-like periplasmic core domain AL543_RS19375 PF02687 FtsX-like permease family AL543_RS19385 PF17757 UvrB interaction domain AL543_RS19385 PF03461 TRCF domain AL543_RS19385 PF00271 Helicase conserved C-terminal domain AL543_RS19385 PF00270 DEAD/DEAH box helicase AL543_RS19385 PF02559 CarD-like/TRCF domain AL543_RS19400 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_RS19405 PF05728 Uncharacterised protein family (UPF0227) AL543_RS19410 PF01636 Phosphotransferase enzyme family AL543_RS19415 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL543_RS19415 PF13036 Peptidoglycan-synthase activator LpoB AL543_RS19430 PF01230 HIT domain AL543_RS19435 PF00672 HAMP domain AL543_RS19435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS19445 PF07840 FadR C-terminal domain AL543_RS19445 PF00392 Bacterial regulatory proteins, gntR family AL543_RS19450 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL543_RS19455 PF02600 Disulfide bond formation protein DsbB AL543_RS19460 PF01580 FtsK/SpoIIIE family AL543_RS19460 PF09397 Ftsk gamma domain AL543_RS19460 PF17854 FtsK alpha domain AL543_RS19460 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL543_RS19465 PF01037 Lrp/AsnC ligand binding domain AL543_RS19470 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL543_RS19470 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL543_RS19480 PF03466 LysR substrate binding domain AL543_RS19480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS19490 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL543_RS19495 PF01797 Transposase IS200 like AL543_RS19510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_RS19510 PF00005 ABC transporter AL543_RS19515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL543_RS19515 PF00005 ABC transporter AL543_RS19520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL543_RS19525 PF12911 N-terminal TM domain of oligopeptide transport permease C AL543_RS19525 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS19530 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS19560 PF10531 SLBB domain AL543_RS19560 PF02563 Polysaccharide biosynthesis/export protein AL543_RS19575 PF02954 Bacterial regulatory protein, Fis family AL543_RS19575 PF00158 Sigma-54 interaction domain AL543_RS19575 PF00072 Response regulator receiver domain AL543_RS19585 PF00534 Glycosyl transferases group 1 AL543_RS19585 PF13439 Glycosyltransferase Family 4 AL543_RS19605 PF12464 Maltose acetyltransferase AL543_RS19605 PF00132 Bacterial transferase hexapeptide (six repeats) AL543_RS19605 PF14602 Hexapeptide repeat of succinyl-transferase AL543_RS19620 PF00534 Glycosyl transferases group 1 AL543_RS19625 PF00535 Glycosyl transferase family 2 AL543_RS19630 PF02397 Bacterial sugar transferase AL543_RS19640 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS19640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS19640 PF09308 LuxQ, periplasmic AL543_RS19640 PF00072 Response regulator receiver domain AL543_RS19645 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL543_RS19650 PF18073 Rubredoxin metal binding domain AL543_RS19655 PF06305 Lipopolysaccharide assembly protein A domain AL543_RS19660 PF00216 Bacterial DNA-binding protein AL543_RS19665 PF00575 S1 RNA binding domain AL543_RS19670 PF02224 Cytidylate kinase AL543_RS19685 PF13145 PPIC-type PPIASE domain AL543_RS19690 PF00216 Bacterial DNA-binding protein AL543_RS19695 PF00004 ATPase family associated with various cellular activities (AAA) AL543_RS19695 PF05362 Lon protease (S16) C-terminal proteolytic domain AL543_RS19695 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL543_RS19700 PF07724 AAA domain (Cdc48 subfamily) AL543_RS19700 PF10431 C-terminal, D2-small domain, of ClpB protein AL543_RS19700 PF06689 ClpX C4-type zinc finger AL543_RS19705 PF00574 Clp protease AL543_RS19710 PF05697 Bacterial trigger factor protein (TF) AL543_RS19710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL543_RS19710 PF05698 Bacterial trigger factor protein (TF) C-terminus AL543_RS19720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS19720 PF02743 Cache domain AL543_RS19720 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS19725 PF00072 Response regulator receiver domain AL543_RS19725 PF02954 Bacterial regulatory protein, Fis family AL543_RS19725 PF00158 Sigma-54 interaction domain AL543_RS19730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL543_RS19735 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL543_RS19740 PF03480 Bacterial extracellular solute-binding protein, family 7 AL543_RS19745 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL543_RS19760 PF00563 EAL domain AL543_RS19760 PF00990 Diguanylate cyclase, GGDEF domain AL543_RS19760 PF03707 Bacterial signalling protein N terminal repeat AL543_RS19785 PF01569 PAP2 superfamily AL543_RS19800 PF08402 TOBE domain AL543_RS19800 PF00005 ABC transporter AL543_RS19805 PF00528 Binding-protein-dependent transport system inner membrane component AL543_RS19830 PF13340 Putative transposase of IS4/5 family (DUF4096) AL543_RS19855 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL543_RS19855 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL543_RS19865 PF00704 Glycosyl hydrolases family 18 AL543_RS19870 PF07662 Na+ dependent nucleoside transporter C-terminus AL543_RS19870 PF01773 Na+ dependent nucleoside transporter N-terminus AL543_RS19870 PF07670 Nucleoside recognition AL543_RS19875 PF03466 LysR substrate binding domain AL543_RS19875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS19880 PF13406 Transglycosylase SLT domain AL543_RS19885 PF05166 YcgL domain AL543_RS19890 PF05209 Septum formation inhibitor MinC, N-terminal domain AL543_RS19890 PF03775 Septum formation inhibitor MinC, C-terminal domain AL543_RS19895 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL543_RS19900 PF03776 Septum formation topological specificity factor MinE AL543_RS19905 PF04170 NlpE N-terminal domain AL543_RS19925 PF07690 Major Facilitator Superfamily AL543_RS19930 PF00672 HAMP domain AL543_RS19930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS19930 PF02743 Cache domain AL543_RS19935 PF01381 Helix-turn-helix AL543_RS19935 PF07883 Cupin domain AL543_RS19940 PF03594 Benzoate membrane transport protein AL543_RS19945 PF00501 AMP-binding enzyme AL543_RS19945 PF13193 AMP-binding enzyme C-terminal domain AL543_RS19950 PF13378 Enolase C-terminal domain-like AL543_RS19955 PF00378 Enoyl-CoA hydratase/isomerase AL543_RS19960 PF12697 Alpha/beta hydrolase family AL543_RS19965 PF16582 Middle domain of thiamine pyrophosphate AL543_RS19965 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL543_RS19965 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL543_RS19970 PF00425 chorismate binding enzyme AL543_RS19975 PF00155 Aminotransferase class I and II AL543_RS19985 PF13286 Phosphohydrolase-associated domain AL543_RS19985 PF01966 HD domain AL543_RS19995 PF01694 Rhomboid family AL543_RS19995 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL543_RS20005 PF00570 HRDC domain AL543_RS20005 PF01612 3'-5' exonuclease AL543_RS20010 PF00501 AMP-binding enzyme AL543_RS20010 PF13193 AMP-binding enzyme C-terminal domain AL543_RS20015 PF00561 alpha/beta hydrolase fold AL543_RS20030 PF00814 Glycoprotease family AL543_RS20035 PF13307 Helicase C-terminal domain AL543_RS20035 PF04851 Type III restriction enzyme, res subunit AL543_RS20045 PF01842 ACT domain AL543_RS20045 PF00551 Formyl transferase AL543_RS20050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL543_RS20050 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL543_RS20055 PF01343 Peptidase family S49 AL543_RS20060 PF00710 Asparaginase, N-terminal AL543_RS20060 PF17763 Glutaminase/Asparaginase C-terminal domain AL543_RS20065 PF07023 Protein of unknown function (DUF1315) AL543_RS20075 PF01641 SelR domain AL543_RS20080 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL543_RS20080 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL543_RS20085 PF01263 Aldose 1-epimerase AL543_RS20095 PF13847 Methyltransferase domain AL543_RS20115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL543_RS20125 PF01584 CheW-like domain AL543_RS20125 PF00072 Response regulator receiver domain AL543_RS20130 PF00480 ROK family AL543_RS20135 PF02887 Pyruvate kinase, alpha/beta domain AL543_RS20135 PF00224 Pyruvate kinase, barrel domain AL543_RS20140 PF01734 Patatin-like phospholipase AL543_RS20155 PF00209 Sodium:neurotransmitter symporter family AL543_RS20170 PF00367 phosphotransferase system, EIIB AL543_RS20170 PF02378 Phosphotransferase system, EIIC AL543_RS20175 PF01026 TatD related DNase AL543_RS20180 PF09115 DNA polymerase III, delta subunit, C terminal AL543_RS20185 PF02223 Thymidylate kinase AL543_RS20190 PF02618 YceG-like family AL543_RS20195 PF01063 Amino-transferase class IV AL543_RS20200 PF00109 Beta-ketoacyl synthase, N-terminal domain AL543_RS20200 PF02801 Beta-ketoacyl synthase, C-terminal domain AL543_RS20205 PF00550 Phosphopantetheine attachment site AL543_RS20215 PF00698 Acyl transferase domain AL543_RS20220 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL543_RS20220 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL543_RS20225 PF02504 Fatty acid synthesis protein AL543_RS20230 PF01783 Ribosomal L32p protein family AL543_RS20235 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL543_RS20240 PF02545 Maf-like protein AL543_RS20245 PF01479 S4 domain AL543_RS20245 PF00849 RNA pseudouridylate synthase AL543_RS20260 PF10150 Ribonuclease E/G family AL543_RS20260 PF12111 Polyribonucleotide phosphorylase C terminal AL543_RS20260 PF00575 S1 RNA binding domain AL543_RS20265 PF00916 Sulfate permease family AL543_RS20265 PF01740 STAS domain AL543_RS20275 PF13006 Insertion element 4 transposase N-terminal AL543_RS20275 PF01609 Transposase DDE domain AL543_RS20280 PF00171 Aldehyde dehydrogenase family AL543_RS20280 PF00465 Iron-containing alcohol dehydrogenase AL543_RS20285 PF01914 MarC family integral membrane protein AL543_RS20290 PF00520 Ion transport protein AL543_RS20290 PF00027 Cyclic nucleotide-binding domain AL543_RS20295 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL543_RS20295 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL543_RS20300 PF03553 Na+/H+ antiporter family AL543_RS20310 PF04245 37-kD nucleoid-associated bacterial protein AL543_RS20315 PF07208 Protein of unknown function (DUF1414) AL543_RS20320 PF00884 Sulfatase AL543_RS20320 PF11893 Domain of unknown function (DUF3413) AL543_RS20340 PF13358 DDE superfamily endonuclease AL543_RS20350 PF00106 short chain dehydrogenase AL543_RS20365 PF00850 Histone deacetylase domain AL543_RS20370 PF01131 DNA topoisomerase AL543_RS20370 PF01751 Toprim domain AL543_RS20375 PF00462 Glutaredoxin AL543_RS20380 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL543_RS20380 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL543_RS20395 PF04333 MlaA lipoprotein AL543_RS20405 PF03918 Cytochrome C biogenesis protein AL543_RS20410 PF08534 Redoxin AL543_RS20415 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL543_RS20415 PF01578 Cytochrome C assembly protein AL543_RS20420 PF03100 CcmE AL543_RS20430 PF01578 Cytochrome C assembly protein AL543_RS20435 PF03379 CcmB protein AL543_RS20440 PF00005 ABC transporter AL543_RS20450 PF01584 CheW-like domain AL543_RS20460 PF13614 AAA domain AL543_RS20465 PF00072 Response regulator receiver domain AL543_RS20465 PF01339 CheB methylesterase AL543_RS20470 PF02895 Signal transducing histidine kinase, homodimeric domain AL543_RS20470 PF01584 CheW-like domain AL543_RS20470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS20470 PF00072 Response regulator receiver domain AL543_RS20470 PF01627 Hpt domain AL543_RS20475 PF04344 Chemotaxis phosphatase, CheZ AL543_RS20480 PF00072 Response regulator receiver domain AL543_RS20485 PF04542 Sigma-70 region 2 AL543_RS20485 PF04539 Sigma-70 region 3 AL543_RS20485 PF04545 Sigma-70, region 4 AL543_RS20490 PF10609 NUBPL iron-transfer P-loop NTPase AL543_RS20495 PF00448 SRP54-type protein, GTPase domain AL543_RS20500 PF00771 FHIPEP family AL543_RS20505 PF00300 Histidine phosphatase superfamily (branch 1) AL543_RS20510 PF00675 Insulinase (Peptidase family M16) AL543_RS20510 PF05193 Peptidase M16 inactive domain AL543_RS20520 PF03485 Arginyl tRNA synthetase N terminal domain AL543_RS20520 PF05746 DALR anticodon binding domain AL543_RS20520 PF00750 tRNA synthetases class I (R) AL543_RS20535 PF02421 Ferrous iron transport protein B AL543_RS20535 PF07664 Ferrous iron transport protein B C terminus AL543_RS20535 PF07670 Nucleoside recognition AL543_RS20540 PF04023 FeoA domain AL543_RS20545 PF02311 AraC-like ligand binding domain AL543_RS20545 PF12833 Helix-turn-helix domain AL543_RS20550 PF01297 Zinc-uptake complex component A periplasmic AL543_RS20555 PF00005 ABC transporter AL543_RS20560 PF00950 ABC 3 transport family AL543_RS20565 PF02629 CoA binding domain AL543_RS20565 PF00549 CoA-ligase AL543_RS20570 PF08442 ATP-grasp domain AL543_RS20570 PF00549 CoA-ligase AL543_RS20575 PF02817 e3 binding domain AL543_RS20575 PF00364 Biotin-requiring enzyme AL543_RS20575 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL543_RS20580 PF16870 2-oxoglutarate dehydrogenase C-terminal AL543_RS20580 PF02779 Transketolase, pyrimidine binding domain AL543_RS20580 PF16078 2-oxoglutarate dehydrogenase N-terminus AL543_RS20580 PF00676 Dehydrogenase E1 component AL543_RS20585 PF13085 2Fe-2S iron-sulfur cluster binding domain AL543_RS20590 PF00890 FAD binding domain AL543_RS20590 PF02910 Fumarate reductase flavoprotein C-term AL543_RS20595 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL543_RS20600 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL543_RS20605 PF00285 Citrate synthase, C-terminal domain AL543_RS20610 PF01784 NIF3 (NGG1p interacting factor 3) AL543_RS20620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL543_RS20620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL543_RS20620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL543_RS20620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL543_RS20625 PF17206 SeqA protein N-terminal domain AL543_RS20625 PF03925 SeqA protein C-terminal domain AL543_RS20630 PF12697 Alpha/beta hydrolase family AL543_RS20640 PF00258 Flavodoxin AL543_RS20645 PF04172 LrgB-like family AL543_RS20650 PF03788 LrgA family AL543_RS20655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL543_RS20655 PF03466 LysR substrate binding domain AL543_RS20665 PF01475 Ferric uptake regulator family AL543_RS20670 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL543_RS20670 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL543_RS20675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL543_RS20675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL543_RS20675 PF11890 Domain of unknown function (DUF3410) AL543_RS20680 PF02801 Beta-ketoacyl synthase, C-terminal domain AL543_RS20680 PF00109 Beta-ketoacyl synthase, N-terminal domain AL543_RS20685 PF01266 FAD dependent oxidoreductase AL543_RS20685 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL543_RS20690 PF03358 NADPH-dependent FMN reductase AL543_RS20695 PF08891 YfcL protein AL543_RS20700 PF04315 Elongation factor P hydroxylase AL543_RS20705 PF03458 UPF0126 domain AL543_RS20710 PF01264 Chorismate synthase AL543_RS20720 PF05175 Methyltransferase small domain AL543_RS20725 PF01713 Smr domain AL543_RS20730 PF01312 FlhB HrpN YscU SpaS Family AL543_RS20735 PF01311 Bacterial export proteins, family 1 AL543_RS20740 PF01313 Bacterial export proteins, family 3 AL543_RS20745 PF00813 FliP family AL543_RS20750 PF04347 Flagellar biosynthesis protein, FliO AL543_RS20755 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL543_RS20760 PF02154 Flagellar motor switch protein FliM AL543_RS20760 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL543_RS20780 PF18269 T3SS EscN ATPase C-terminal domain AL543_RS20780 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL543_RS20785 PF02108 Flagellar assembly protein FliH AL543_RS20790 PF01706 FliG C-terminal domain AL543_RS20790 PF14841 FliG middle domain AL543_RS20790 PF14842 FliG N-terminal domain AL543_RS20795 PF08345 Flagellar M-ring protein C-terminal AL543_RS20795 PF01514 Secretory protein of YscJ/FliF family AL543_RS20800 PF02049 Flagellar hook-basal body complex protein FliE AL543_RS20805 PF00072 Response regulator receiver domain AL543_RS20805 PF00158 Sigma-54 interaction domain AL543_RS20805 PF02954 Bacterial regulatory protein, Fis family AL543_RS20810 PF13188 PAS domain AL543_RS20810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL543_RS20810 PF00512 His Kinase A (phospho-acceptor) domain AL543_RS20815 PF00158 Sigma-54 interaction domain AL543_RS20815 PF02954 Bacterial regulatory protein, Fis family AL543_RS20815 PF06490 Flagellar regulatory protein FleQ AL543_RS20820 PF02561 Flagellar protein FliS AL543_RS20830 PF07195 Flagellar hook-associated protein 2 C-terminus AL543_RS20830 PF07196 Flagellin hook IN motif AL543_RS20830 PF02465 Flagellar hook-associated protein 2 N-terminus AL543_RS20835 PF03646 FlaG protein AL543_RS20840 PF00669 Bacterial flagellin N-terminal helical region AL543_RS20840 PF00700 Bacterial flagellin C-terminal helical region AL543_RS20840 PF07196 Flagellin hook IN motif AL543_RS20845 PF07196 Flagellin hook IN motif AL543_RS20845 PF00669 Bacterial flagellin N-terminal helical region AL543_RS20845 PF00700 Bacterial flagellin C-terminal helical region AL543_RS20850 PF00669 Bacterial flagellin N-terminal helical region AL543_RS20850 PF00700 Bacterial flagellin C-terminal helical region AL543_RS20850 PF07196 Flagellin hook IN motif AL543_RS20855 PF04261 Dyp-type peroxidase family AL543_RS20860 PF11143 Protein of unknown function (DUF2919) AL543_RS20875 PF03960 ArsC family AL543_RS20880 PF01546 Peptidase family M20/M25/M40 AL543_RS20880 PF07687 Peptidase dimerisation domain AL543_RS20885 PF02557 D-alanyl-D-alanine carboxypeptidase AL543_RS20895 PF06804 NlpB/DapX lipoprotein AL543_RS20900 PF00701 Dihydrodipicolinate synthetase family AL543_RS20910 PF00578 AhpC/TSA family AL543_RS20915 PF00672 HAMP domain AL543_RS20915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL543_RS20915 PF02743 Cache domain AL543_RS20920 PF01594 AI-2E family transporter AL543_RS20930 PF01435 Peptidase family M48 AL543_RS20930 PF13181 Tetratricopeptide repeat AL543_RS20935 PF03960 ArsC family AL543_RS20940 PF03358 NADPH-dependent FMN reductase AL543_RS20955 PF00860 Permease family AL543_RS20960 PF04073 Aminoacyl-tRNA editing domain AL543_RS20965 PF02872 5'-nucleotidase, C-terminal domain AL543_RS20965 PF00149 Calcineurin-like phosphoesterase AL543_RS20970 PF00793 DAHP synthetase I family AL543_RS20975 PF13369 Transglutaminase-like superfamily AL543_RS20980 PF04247 Invasion gene expression up-regulator, SirB AL543_RS20985 PF17827 PrmC N-terminal domain AL543_RS20985 PF13847 Methyltransferase domain AL543_RS20990 PF03462 PCRF domain AL543_RS20990 PF00472 RF-1 domain AL543_RS20995 PF01488 Shikimate / quinate 5-dehydrogenase AL543_RS20995 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL543_RS20995 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL543_RS21000 PF03550 Outer membrane lipoprotein LolB AL543_RS21005 PF08544 GHMP kinases C terminal AL543_RS21005 PF00288 GHMP kinases N terminal domain AL543_RS21010 PF14572 Phosphoribosyl synthetase-associated domain AL543_RS21010 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL543_RS21015 PF01195 Peptidyl-tRNA hydrolase AL543_RS21020 PF01926 50S ribosome-binding GTPase AL543_RS21020 PF06071 Protein of unknown function (DUF933) AL543_RS21105 PF07196 Flagellin hook IN motif AL543_RS21105 PF00700 Bacterial flagellin C-terminal helical region AL543_RS21105 PF00669 Bacterial flagellin N-terminal helical region AL543_RS21115 PF00700 Bacterial flagellin C-terminal helical region AL543_RS21115 PF07196 Flagellin hook IN motif AL543_RS21115 PF00669 Bacterial flagellin N-terminal helical region AL543_RS21125 PF07196 Flagellin hook IN motif AL543_RS21125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL543_RS21130 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL543_RS21130 PF10135 Rod binding protein AL543_RS21135 PF02119 Flagellar P-ring protein AL543_RS21140 PF02107 Flagellar L-ring protein AL543_RS21145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL543_RS21145 PF00460 Flagella basal body rod protein AL543_RS21150 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL543_RS21150 PF00460 Flagella basal body rod protein AL543_RS21155 PF00460 Flagella basal body rod protein AL543_RS21155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL543_RS21155 PF07559 Flagellar basal body protein FlaE AL543_RS21160 PF03963 Flagellar hook capping protein - N-terminal region AL543_RS21160 PF13861 FlgD Tudor-like domain AL543_RS21160 PF13860 FlgD Ig-like domain AL543_RS21165 PF00460 Flagella basal body rod protein AL543_RS21165 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL543_RS21170 PF00460 Flagella basal body rod protein AL543_RS21180 PF03705 CheR methyltransferase, all-alpha domain AL543_RS21180 PF01739 CheR methyltransferase, SAM binding domain AL543_RS21185 PF00072 Response regulator receiver domain AL543_RS21185 PF01584 CheW-like domain AL543_RS21230 PF00691 OmpA family AL543_RS21230 PF01389 OmpA-like transmembrane domain AL543_RS21235 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL543_RS21240 PF00403 Heavy-metal-associated domain AL543_RS21250 PF02838 Glycosyl hydrolase family 20, domain 2 AL543_RS21250 PF00728 Glycosyl hydrolase family 20, catalytic domain AL543_RS21250 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL543_RS21250 PF03173 Putative carbohydrate binding domain AL543_RS21270 PF01713 Smr domain AL543_RS21275 PF01479 S4 domain AL543_RS21275 PF00849 RNA pseudouridylate synthase AL543_RS21285 PF02769 AIR synthase related protein, C-terminal domain AL543_RS21285 PF00586 AIR synthase related protein, N-terminal domain AL543_RS21290 PF00551 Formyl transferase AL543_RS21295 PF13230 Glutamine amidotransferases class-II AL543_RS21300 PF13580 SIS domain AL543_RS21305 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL543_RS21305 PF09317 Domain of unknown function (DUF1974) AL543_RS21305 PF02770 Acyl-CoA dehydrogenase, middle domain AL543_RS21305 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL543_RS21315 PF02322 Cytochrome bd terminal oxidase subunit II AL543_RS21320 PF01654 Cytochrome bd terminal oxidase subunit I AL543_RS21335 PF05114 Protein of unknown function (DUF692) AL543_RS21355 PF00929 Exonuclease AL543_RS21360 PF00075 RNase H AL543_RS21365 PF08241 Methyltransferase domain AL543_RS21370 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL543_RS21370 PF00753 Metallo-beta-lactamase superfamily AL543_RS21375 PF01476 LysM domain AL543_RS21375 PF01464 Transglycosylase SLT domain AL543_RS21380 PF03372 Endonuclease/Exonuclease/phosphatase family AL543_RS21385 PF00543 Nitrogen regulatory protein P-II AL543_RS21390 PF00034 Cytochrome c AL543_RS21395 PF01171 PP-loop family AL543_RS21395 PF09179 TilS substrate binding domain AL543_RS21395 PF11734 TilS substrate C-terminal domain AL543_RS21400 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit