locus-tag class description vm_RS00005 PF00308 Bacterial dnaA protein vm_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix vm_RS00005 PF11638 DnaA N-terminal domain vm_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain vm_RS00010 PF02767 DNA polymerase III beta subunit, central domain vm_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain vm_RS00015 PF02463 RecF/RecN/SMC N terminal domain vm_RS00020 PF01751 Toprim domain vm_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS00020 PF18053 DNA gyrase B subunit insert domain vm_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus vm_RS00020 PF00204 DNA gyrase B vm_RS00035 PF00011 Hsp20/alpha crystallin family vm_RS00040 PF00155 Aminotransferase class I and II vm_RS00045 PF05746 DALR anticodon binding domain vm_RS00045 PF02092 Glycyl-tRNA synthetase beta subunit vm_RS00050 PF02091 Glycyl-tRNA synthetase alpha subunit vm_RS00055 PF01169 Uncharacterized protein family UPF0016 vm_RS00065 PF01206 Sulfurtransferase TusA vm_RS00075 PF03466 LysR substrate binding domain vm_RS00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS00080 PF00107 Zinc-binding dehydrogenase vm_RS00080 PF08240 Alcohol dehydrogenase GroES-like domain vm_RS00085 PF00291 Pyridoxal-phosphate dependent enzyme vm_RS00085 PF00585 C-terminal regulatory domain of Threonine dehydratase vm_RS00090 PF00920 Dehydratase family vm_RS00095 PF01063 Amino-transferase class IV vm_RS00105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain vm_RS00105 PF00205 Thiamine pyrophosphate enzyme, central domain vm_RS00105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain vm_RS00110 PF13335 Magnesium chelatase, subunit ChlI C-terminal vm_RS00110 PF01078 Magnesium chelatase, subunit ChlI vm_RS00115 PF01553 Acyltransferase vm_RS00120 PF01323 DSBA-like thioredoxin domain vm_RS00125 PF01636 Phosphotransferase enzyme family vm_RS00130 PF13746 4Fe-4S dicluster domain vm_RS00130 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase vm_RS00130 PF12801 4Fe-4S binding domain vm_RS00135 PF06288 Protein of unknown function (DUF1040) vm_RS00145 PF07070 SpoOM protein vm_RS00150 PF03006 Haemolysin-III related vm_RS00160 PF02386 Cation transport protein vm_RS00165 PF02080 TrkA-C domain vm_RS00165 PF02254 TrkA-N domain vm_RS00170 PF01029 NusB family vm_RS00170 PF01189 16S rRNA methyltransferase RsmB/F vm_RS00175 PF00551 Formyl transferase vm_RS00175 PF02911 Formyl transferase, C-terminal domain vm_RS00180 PF01327 Polypeptide deformylase vm_RS00185 PF01476 LysM domain vm_RS00190 PF02481 DNA recombination-mediator protein A vm_RS00190 PF17782 DprA winged helix domain vm_RS00195 PF04361 Protein of unknown function (DUF494) vm_RS00200 PF01396 Topoisomerase DNA binding C4 zinc finger vm_RS00205 PF02222 ATP-grasp domain vm_RS00205 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain vm_RS00210 PF00731 AIR carboxylase vm_RS00215 PF01300 Telomere recombination vm_RS00220 PF01218 Coproporphyrinogen III oxidase vm_RS00225 PF08501 Shikimate dehydrogenase substrate binding domain vm_RS00225 PF01488 Shikimate / quinate 5-dehydrogenase vm_RS00225 PF18317 Shikimate 5'-dehydrogenase C-terminal domain vm_RS00235 PF00132 Bacterial transferase hexapeptide (six repeats) vm_RS00280 PF02537 CrcB-like protein, Camphor Resistance (CrcB) vm_RS00285 PF13667 ThiC-associated domain vm_RS00285 PF01964 Radical SAM ThiC family vm_RS00290 PF02581 Thiamine monophosphate synthase vm_RS00295 PF00899 ThiF family vm_RS00300 PF02597 ThiS family vm_RS00305 PF05690 Thiazole biosynthesis protein ThiG vm_RS00310 PF04055 Radical SAM superfamily vm_RS00310 PF06968 Biotin and Thiamin Synthesis associated domain vm_RS00315 PF00557 Metallopeptidase family M24 vm_RS00315 PF01321 Creatinase/Prolidase N-terminal domain vm_RS00315 PF00557 Metallopeptidase family M24 vm_RS00315 PF01321 Creatinase/Prolidase N-terminal domain vm_RS00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS00320 PF03466 LysR substrate binding domain vm_RS00325 PF07690 Major Facilitator Superfamily vm_RS00335 PF01037 Lrp/AsnC ligand binding domain vm_RS00340 PF00990 Diguanylate cyclase, GGDEF domain vm_RS00340 PF00563 EAL domain vm_RS00340 PF08448 PAS fold vm_RS00345 PF04445 Putative SAM-dependent methyltransferase vm_RS00355 PF00892 EamA-like transporter family vm_RS00360 PF00582 Universal stress protein family vm_RS00370 PF00210 Ferritin-like domain vm_RS00375 PF10625 Universal stress protein B (UspB) vm_RS00385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS00385 PF08447 PAS fold vm_RS00395 PF02646 RmuC family vm_RS00400 PF01209 ubiE/COQ5 methyltransferase family vm_RS00405 PF02036 SCP-2 sterol transfer family vm_RS00410 PF03109 ABC1 family vm_RS00415 PF02416 mttA/Hcf106 family vm_RS00420 PF02416 mttA/Hcf106 family vm_RS00425 PF00902 Sec-independent protein translocase protein (TatC) vm_RS00430 PF01554 MatE vm_RS00440 PF00717 Peptidase S24-like vm_RS00440 PF01726 LexA DNA binding domain vm_RS00445 PF01553 Acyltransferase vm_RS00450 PF01040 UbiA prenyltransferase family vm_RS00455 PF04345 Chorismate lyase vm_RS00465 PF03748 Flagellar basal body-associated protein FliL vm_RS00470 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease vm_RS00470 PF01694 Rhomboid family vm_RS00475 PF00581 Rhodanese-like domain vm_RS00485 PF01026 TatD related DNase vm_RS00490 PF00490 Delta-aminolevulinic acid dehydratase vm_RS00500 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain vm_RS00500 PF01367 5'-3' exonuclease, C-terminal SAM fold vm_RS00500 PF01612 3'-5' exonuclease vm_RS00500 PF00476 DNA polymerase family A vm_RS00505 PF14706 Transposase DNA-binding vm_RS00505 PF02281 Transposase Tn5 dimerisation domain vm_RS00505 PF01609 Transposase DDE domain vm_RS00510 PF01926 50S ribosome-binding GTPase vm_RS00515 PF00034 Cytochrome c vm_RS00525 PF04220 Der GTPase activator (YihI) vm_RS00530 PF10675 Protein of unknown function (DUF2489) vm_RS00535 PF04055 Radical SAM superfamily vm_RS00535 PF06969 HemN C-terminal domain vm_RS00540 PF07219 HemY protein N-terminus vm_RS00545 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase vm_RS00550 PF02602 Uroporphyrinogen-III synthase HemD vm_RS00555 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain vm_RS00555 PF03900 Porphobilinogen deaminase, C-terminal domain vm_RS00565 PF12633 Adenylate cyclase NT domain vm_RS00565 PF01295 Adenylate cyclase, class-I vm_RS00570 PF01491 Frataxin-like domain vm_RS00580 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain vm_RS00580 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain vm_RS00585 PF01678 Diaminopimelate epimerase vm_RS00590 PF04340 Protein of unknown function, DUF484 vm_RS00595 PF02899 Phage integrase, N-terminal SAM-like domain vm_RS00595 PF00589 Phage integrase family vm_RS00600 PF13419 Haloacid dehalogenase-like hydrolase vm_RS00605 PF00990 Diguanylate cyclase, GGDEF domain vm_RS00605 PF08495 FIST N domain vm_RS00605 PF10442 FIST C domain vm_RS00605 PF00563 EAL domain vm_RS00625 PF12146 Serine aminopeptidase, S33 vm_RS00630 PF01810 LysE type translocator vm_RS00635 PF00563 EAL domain vm_RS00635 PF08668 HDOD domain vm_RS00640 PF00210 Ferritin-like domain vm_RS00680 PF00448 SRP54-type protein, GTPase domain vm_RS00680 PF02881 SRP54-type protein, helical bundle domain vm_RS00685 PF00005 ABC transporter vm_RS00690 PF18075 FtsX extracellular domain vm_RS00695 PF00140 Sigma-70 factor, region 1.2 vm_RS00695 PF04542 Sigma-70 region 2 vm_RS00695 PF04545 Sigma-70, region 4 vm_RS00705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain vm_RS00705 PF07992 Pyridine nucleotide-disulphide oxidoreductase vm_RS00710 PF00440 Bacterial regulatory proteins, tetR family vm_RS00715 PF07226 Protein of unknown function (DUF1422) vm_RS00720 PF05958 tRNA (Uracil-5-)-methyltransferase vm_RS00725 PF00593 TonB dependent receptor vm_RS00725 PF07715 TonB-dependent Receptor Plug Domain vm_RS00735 PF01177 Asp/Glu/Hydantoin racemase vm_RS00800 PF00962 Adenosine/AMP deaminase vm_RS00805 PF00563 EAL domain vm_RS00805 PF00990 Diguanylate cyclase, GGDEF domain vm_RS00805 PF03707 Bacterial signalling protein N terminal repeat vm_RS00805 PF13188 PAS domain vm_RS00810 PF02954 Bacterial regulatory protein, Fis family vm_RS00810 PF00158 Sigma-54 interaction domain vm_RS00810 PF00072 Response regulator receiver domain vm_RS00815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS00815 PF00512 His Kinase A (phospho-acceptor) domain vm_RS00815 PF00989 PAS fold vm_RS00825 PF00120 Glutamine synthetase, catalytic domain vm_RS00825 PF03951 Glutamine synthetase, beta-Grasp domain vm_RS00835 PF00679 Elongation factor G C-terminus vm_RS00835 PF03144 Elongation factor Tu domain 2 vm_RS00835 PF00009 Elongation factor Tu GTP binding domain vm_RS00845 PF03631 Virulence factor BrkB vm_RS00850 PF02580 D-Tyr-tRNA(Tyr) deacylase vm_RS00855 PF09500 Putative thioesterase (yiiD_Cterm) vm_RS00855 PF00583 Acetyltransferase (GNAT) family vm_RS00865 PF01293 Phosphoenolpyruvate carboxykinase vm_RS00870 PF01430 Hsp33 protein vm_RS00875 PF01479 S4 domain vm_RS00880 PF11356 Type II secretion system protein C vm_RS00885 PF00263 Bacterial type II and III secretion system protein vm_RS00885 PF03958 Bacterial type II/III secretion system short domain vm_RS00890 PF00437 Type II/IV secretion system protein vm_RS00895 PF00482 Type II secretion system (T2SS), protein F vm_RS00900 PF08334 Type II secretion system (T2SS), protein G vm_RS00900 PF07963 Prokaryotic N-terminal methylation motif vm_RS00905 PF12019 Type II transport protein GspH vm_RS00910 PF02501 Type II secretion system (T2SS), protein I vm_RS00910 PF07963 Prokaryotic N-terminal methylation motif vm_RS00915 PF07963 Prokaryotic N-terminal methylation motif vm_RS00915 PF11612 Type II secretion system (T2SS), protein J vm_RS00920 PF03934 Type II secretion system (T2SS), protein K vm_RS00925 PF05134 Type II secretion system (T2SS), protein L vm_RS00925 PF12693 GspL periplasmic domain vm_RS00930 PF04612 Type II secretion system (T2SS), protein M vm_RS00935 PF01203 Type II secretion system (T2SS), protein N vm_RS00940 PF00459 Inositol monophosphatase family vm_RS00945 PF00293 NUDIX domain vm_RS00950 PF01521 Iron-sulphur cluster biosynthesis vm_RS00950 PF01106 NifU-like domain vm_RS00955 PF00156 Phosphoribosyl transferase domain vm_RS00960 PF00561 alpha/beta hydrolase fold vm_RS00970 PF09371 Tex-like protein N-terminal domain vm_RS00970 PF00575 S1 RNA binding domain vm_RS00970 PF16921 Tex protein YqgF-like domain vm_RS00970 PF17674 HHH domain vm_RS00995 PF00717 Peptidase S24-like vm_RS01000 PF00817 impB/mucB/samB family vm_RS01000 PF13438 Domain of unknown function (DUF4113) vm_RS01000 PF11798 IMS family HHH motif vm_RS01000 PF11799 impB/mucB/samB family C-terminal domain vm_RS01070 PF04851 Type III restriction enzyme, res subunit vm_RS01080 PF03449 Transcription elongation factor, N-terminal vm_RS01080 PF01272 Transcription elongation factor, GreA/GreB, C-term vm_RS01100 PF01272 Transcription elongation factor, GreA/GreB, C-term vm_RS01100 PF03449 Transcription elongation factor, N-terminal vm_RS01115 PF00005 ABC transporter vm_RS01120 PF02653 Branched-chain amino acid transport system / permease component vm_RS01125 PF01915 Glycosyl hydrolase family 3 C-terminal domain vm_RS01125 PF00933 Glycosyl hydrolase family 3 N terminal domain vm_RS01130 PF00704 Glycosyl hydrolases family 18 vm_RS01130 PF08329 Chitinase A, N-terminal domain vm_RS01135 PF00486 Transcriptional regulatory protein, C terminal vm_RS01135 PF00072 Response regulator receiver domain vm_RS01140 PF00512 His Kinase A (phospho-acceptor) domain vm_RS01140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS01140 PF00672 HAMP domain vm_RS01145 PF00860 Permease family vm_RS01150 PF00270 DEAD/DEAH box helicase vm_RS01150 PF17191 RecG wedge domain vm_RS01150 PF00271 Helicase conserved C-terminal domain vm_RS01155 PF04607 Region found in RelA / SpoT proteins vm_RS01155 PF02824 TGS domain vm_RS01155 PF13291 ACT domain vm_RS01160 PF01192 RNA polymerase Rpb6 vm_RS01165 PF00625 Guanylate kinase vm_RS01170 PF02592 Putative vitamin uptake transporter vm_RS01175 PF00474 Sodium:solute symporter family vm_RS01190 PF13693 Winged helix-turn-helix DNA-binding vm_RS01195 PF09299 Mu transposase, C-terminal vm_RS01195 PF09039 Mu DNA binding, I gamma subdomain vm_RS01195 PF02316 Mu DNA-binding domain vm_RS01195 PF02914 Bacteriophage Mu transposase vm_RS01200 PF13401 AAA domain vm_RS01200 PF09077 Mu B transposition protein, C terminal vm_RS01375 PF10124 Mu-like prophage major head subunit gpT vm_RS01385 PF07030 Protein of unknown function (DUF1320) vm_RS01415 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 vm_RS01435 PF06890 Bacteriophage Mu Gp45 protein vm_RS01445 PF04865 Baseplate J-like protein vm_RS01450 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) vm_RS01465 PF00999 Sodium/hydrogen exchanger family vm_RS01465 PF02080 TrkA-C domain vm_RS01465 PF03471 Transporter associated domain vm_RS01470 PF00196 Bacterial regulatory proteins, luxR family vm_RS01470 PF00072 Response regulator receiver domain vm_RS01475 PF02683 Cytochrome C biogenesis protein transmembrane region vm_RS01475 PF11412 Disulphide bond corrector protein DsbC vm_RS01480 PF03605 Anaerobic c4-dicarboxylate membrane transporter vm_RS01485 PF10415 Fumarase C C-terminus vm_RS01485 PF00206 Lyase vm_RS01490 PF04186 FxsA cytoplasmic membrane protein vm_RS01495 PF00588 SpoU rRNA Methylase family vm_RS01500 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain vm_RS01500 PF02777 Iron/manganese superoxide dismutases, C-terminal domain vm_RS01505 PF00672 HAMP domain vm_RS01505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS01505 PF16527 Two-component sensor protein CpxA, periplasmic domain vm_RS01505 PF00512 His Kinase A (phospho-acceptor) domain vm_RS01510 PF00072 Response regulator receiver domain vm_RS01510 PF00486 Transcriptional regulatory protein, C terminal vm_RS01520 PF16916 Dimerisation domain of Zinc Transporter vm_RS01520 PF01545 Cation efflux family vm_RS01525 PF00365 Phosphofructokinase vm_RS01530 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded vm_RS01535 PF06005 Cell division protein ZapB vm_RS01540 PF02219 Methylenetetrahydrofolate reductase vm_RS01545 PF03447 Homoserine dehydrogenase, NAD binding domain vm_RS01545 PF00696 Amino acid kinase family vm_RS01545 PF00742 Homoserine dehydrogenase vm_RS01550 PF01053 Cys/Met metabolism PLP-dependent enzyme vm_RS01555 PF01340 Met Apo-repressor, MetJ vm_RS01560 PF00390 Malic enzyme, N-terminal domain vm_RS01560 PF03949 Malic enzyme, NAD binding domain vm_RS01565 PF01197 Ribosomal protein L31 vm_RS01570 PF18319 PriA DNA helicase Cys-rich region (CRR) domain vm_RS01570 PF00270 DEAD/DEAH box helicase vm_RS01570 PF18074 Primosomal protein N C-terminal domain vm_RS01570 PF00271 Helicase conserved C-terminal domain vm_RS01570 PF17764 3′ DNA-binding domain (3′BD) vm_RS01575 PF00356 Bacterial regulatory proteins, lacI family vm_RS01585 PF00227 Proteasome subunit vm_RS01590 PF00004 ATPase family associated with various cellular activities (AAA) vm_RS01590 PF07724 AAA domain (Cdc48 subfamily) vm_RS01590 PF10431 C-terminal, D2-small domain, of ClpB protein vm_RS01595 PF01040 UbiA prenyltransferase family vm_RS01600 PF03737 Aldolase/RraA vm_RS01605 PF01554 MatE vm_RS01610 PF00121 Triosephosphate isomerase vm_RS01630 PF08220 DeoR-like helix-turn-helix domain vm_RS01630 PF00455 DeoR C terminal sensor domain vm_RS01635 PF00166 Chaperonin 10 Kd subunit vm_RS01640 PF00118 TCP-1/cpn60 chaperonin family vm_RS01650 PF04055 Radical SAM superfamily vm_RS01655 PF09285 Elongation factor P, C-terminal vm_RS01655 PF01132 Elongation factor P (EF-P) OB domain vm_RS01655 PF08207 Elongation factor P (EF-P) KOW-like domain vm_RS01660 PF02313 Fumarate reductase subunit D vm_RS01665 PF02300 Fumarate reductase subunit C vm_RS01670 PF13183 4Fe-4S dicluster domain vm_RS01670 PF13085 2Fe-2S iron-sulfur cluster binding domain vm_RS01675 PF02910 Fumarate reductase flavoprotein C-term vm_RS01675 PF00890 FAD binding domain vm_RS01680 PF00152 tRNA synthetases class II (D, K and N) vm_RS01685 PF00581 Rhodanese-like domain vm_RS01690 PF02556 Preprotein translocase subunit SecB vm_RS01695 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus vm_RS01695 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus vm_RS01700 PF06426 Serine acetyltransferase, N-terminal vm_RS01700 PF00132 Bacterial transferase hexapeptide (six repeats) vm_RS01710 PF00311 Phosphoenolpyruvate carboxylase vm_RS01715 PF01546 Peptidase family M20/M25/M40 vm_RS01715 PF07687 Peptidase dimerisation domain vm_RS01720 PF02774 Semialdehyde dehydrogenase, dimerisation domain vm_RS01720 PF01118 Semialdehyde dehydrogenase, NAD binding domain vm_RS01725 PF00696 Amino acid kinase family vm_RS01730 PF00764 Arginosuccinate synthase vm_RS01735 PF14698 Argininosuccinate lyase C-terminal vm_RS01735 PF00206 Lyase vm_RS01750 PF08534 Redoxin vm_RS01750 PF00462 Glutaredoxin vm_RS01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS01755 PF03466 LysR substrate binding domain vm_RS01760 PF00905 Penicillin binding protein transpeptidase domain vm_RS01760 PF00912 Transglycosylase vm_RS01760 PF17092 Penicillin-binding protein OB-like domain vm_RS01780 PF04351 Pilus assembly protein, PilP vm_RS01785 PF07660 Secretin and TonB N terminus short domain vm_RS01785 PF11741 AMIN domain vm_RS01785 PF00263 Bacterial type II and III secretion system protein vm_RS01785 PF03958 Bacterial type II/III secretion system short domain vm_RS01790 PF01202 Shikimate kinase vm_RS01795 PF01761 3-dehydroquinate synthase vm_RS01805 PF02086 D12 class N6 adenine-specific DNA methyltransferase vm_RS01810 PF00834 Ribulose-phosphate 3 epimerase family vm_RS01815 PF13419 Haloacid dehalogenase-like hydrolase vm_RS01820 PF00579 tRNA synthetases class I (W and Y) vm_RS01835 PF04055 Radical SAM superfamily vm_RS01835 PF18693 TRAM domain vm_RS01835 PF00919 Uncharacterized protein family UPF0004 vm_RS01840 PF07992 Pyridine nucleotide-disulphide oxidoreductase vm_RS01845 PF00117 Glutamine amidotransferase class-I vm_RS01850 PF00202 Aminotransferase class-III vm_RS01855 PF04958 Arginine N-succinyltransferase beta subunit vm_RS01860 PF00171 Aldehyde dehydrogenase family vm_RS01870 PF00027 Cyclic nucleotide-binding domain vm_RS01870 PF13545 Crp-like helix-turn-helix domain vm_RS01875 PF00485 Phosphoribulokinase / Uridine kinase family vm_RS01880 PF06794 Uncharacterised protein family (UPF0270) vm_RS01885 PF00561 alpha/beta hydrolase fold vm_RS01895 PF00005 ABC transporter vm_RS01895 PF12848 ABC transporter vm_RS01900 PF02525 Flavodoxin-like fold vm_RS01905 PF00999 Sodium/hydrogen exchanger family vm_RS01905 PF02254 TrkA-N domain vm_RS01915 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase vm_RS01920 PF01112 Asparaginase vm_RS01925 PF00709 Adenylosuccinate synthetase vm_RS01930 PF08238 Sel1 repeat vm_RS01935 PF11893 Domain of unknown function (DUF3413) vm_RS01935 PF00884 Sulfatase vm_RS01940 PF00575 S1 RNA binding domain vm_RS01940 PF00773 RNB domain vm_RS01940 PF17876 Cold shock domain vm_RS01940 PF08206 Ribonuclease B OB domain vm_RS01940 PF08461 Ribonuclease R winged-helix domain vm_RS01945 PF00588 SpoU rRNA Methylase family vm_RS01945 PF08032 RNA 2'-O ribose methyltransferase substrate binding vm_RS01950 PF00338 Ribosomal protein S10p/S20e vm_RS01955 PF00297 Ribosomal protein L3 vm_RS01960 PF00573 Ribosomal protein L4/L1 family vm_RS01965 PF00276 Ribosomal protein L23 vm_RS01970 PF00181 Ribosomal Proteins L2, RNA binding domain vm_RS01970 PF03947 Ribosomal Proteins L2, C-terminal domain vm_RS01975 PF00203 Ribosomal protein S19 vm_RS01980 PF00237 Ribosomal protein L22p/L17e vm_RS01985 PF07650 KH domain vm_RS01985 PF00189 Ribosomal protein S3, C-terminal domain vm_RS01990 PF00252 Ribosomal protein L16p/L10e vm_RS01995 PF00831 Ribosomal L29 protein vm_RS02000 PF00366 Ribosomal protein S17 vm_RS02005 PF00238 Ribosomal protein L14p/L23e vm_RS02010 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 vm_RS02010 PF00467 KOW motif vm_RS02015 PF00673 ribosomal L5P family C-terminus vm_RS02015 PF00281 Ribosomal protein L5 vm_RS02020 PF00253 Ribosomal protein S14p/S29e vm_RS02025 PF00410 Ribosomal protein S8 vm_RS02030 PF00347 Ribosomal protein L6 vm_RS02035 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast vm_RS02040 PF03719 Ribosomal protein S5, C-terminal domain vm_RS02040 PF00333 Ribosomal protein S5, N-terminal domain vm_RS02045 PF00327 Ribosomal protein L30p/L7e vm_RS02050 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A vm_RS02055 PF00344 SecY translocase vm_RS02060 PF00444 Ribosomal protein L36 vm_RS02065 PF00416 Ribosomal protein S13/S18 vm_RS02070 PF00411 Ribosomal protein S11 vm_RS02075 PF00163 Ribosomal protein S4/S9 N-terminal domain vm_RS02075 PF01479 S4 domain vm_RS02080 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain vm_RS02080 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain vm_RS02080 PF01000 RNA polymerase Rpb3/RpoA insert domain vm_RS02085 PF01196 Ribosomal protein L17 vm_RS02095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase vm_RS02095 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase vm_RS02100 PF04225 Opacity-associated protein A LysM-like domain vm_RS02100 PF08525 Opacity-associated protein A N-terminal motif vm_RS02105 PF00892 EamA-like transporter family vm_RS02110 PF13673 Acetyltransferase (GNAT) domain vm_RS02115 PF03880 DbpA RNA binding domain vm_RS02115 PF00270 DEAD/DEAH box helicase vm_RS02115 PF00271 Helicase conserved C-terminal domain vm_RS02130 PF14824 Sirohaem biosynthesis protein central vm_RS02130 PF10414 Sirohaem synthase dimerisation region vm_RS02130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases vm_RS02135 PF01507 Phosphoadenosine phosphosulfate reductase family vm_RS02140 PF00009 Elongation factor Tu GTP binding domain vm_RS02165 PF00005 ABC transporter vm_RS02175 PF10795 Protein of unknown function (DUF2607) vm_RS02180 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) vm_RS02185 PF01625 Peptide methionine sulfoxide reductase vm_RS02190 PF07244 Surface antigen variable number repeat vm_RS02190 PF17243 POTRA domain TamA domain 1 vm_RS02190 PF01103 Surface antigen vm_RS02195 PF04357 TamB, inner membrane protein subunit of TAM complex vm_RS02200 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like vm_RS02210 PF00719 Inorganic pyrophosphatase vm_RS02215 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain vm_RS02225 PF01225 Mur ligase family, catalytic domain vm_RS02225 PF02875 Mur ligase family, glutamate ligase domain vm_RS02225 PF08245 Mur ligase middle domain vm_RS02230 PF02441 Flavoprotein vm_RS02245 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS02250 PF00005 ABC transporter vm_RS02255 PF04751 Protein of unknown function (DUF615) vm_RS02260 PF01523 Putative modulator of DNA gyrase vm_RS02265 PF00571 CBS domain vm_RS02265 PF03448 MgtE intracellular N domain vm_RS02265 PF01769 Divalent cation transporter vm_RS02270 PF00381 PTS HPr component phosphorylation site vm_RS02275 PF03668 P-loop ATPase protein family vm_RS02280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 vm_RS02285 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein vm_RS02290 PF04552 Sigma-54, DNA binding domain vm_RS02290 PF04963 Sigma-54 factor, core binding domain vm_RS02290 PF00309 Sigma-54 factor, Activator interacting domain (AID) vm_RS02295 PF00005 ABC transporter vm_RS02295 PF12399 Branched-chain amino acid ATP-binding cassette transporter vm_RS02300 PF03968 OstA-like protein vm_RS02315 PF00571 CBS domain vm_RS02315 PF01380 SIS domain vm_RS02320 PF01699 Sodium/calcium exchanger protein vm_RS02330 PF00005 ABC transporter vm_RS02335 PF02405 Permease MlaE vm_RS02340 PF02470 MlaD protein vm_RS02345 PF05494 MlaC protein vm_RS02355 PF01722 BolA-like protein vm_RS02360 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) vm_RS02365 PF01553 Acyltransferase vm_RS02370 PF01042 Endoribonuclease L-PSP vm_RS02375 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain vm_RS02375 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain vm_RS02380 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain vm_RS02380 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain vm_RS02385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain vm_RS02385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain vm_RS02390 PF13638 PIN domain vm_RS02390 PF02562 PhoH-like protein vm_RS02400 PF00271 Helicase conserved C-terminal domain vm_RS02400 PF12137 RNA polymerase recycling family C-terminal vm_RS02400 PF00176 SNF2 family N-terminal domain vm_RS02400 PF18337 RapA N-terminal Tudor like domain vm_RS02400 PF18339 RapA N-terminal Tudor like domain 1 vm_RS02405 PF00849 RNA pseudouridylate synthase vm_RS02410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain vm_RS02410 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain vm_RS02415 PF05987 Bacterial protein of unknown function (DUF898) vm_RS02425 PF08264 Anticodon-binding domain of tRNA vm_RS02425 PF00133 tRNA synthetases class I (I, L, M and V) vm_RS02425 PF10458 Valyl tRNA synthetase tRNA binding arm vm_RS02430 PF04364 DNA polymerase III chi subunit, HolC vm_RS02435 PF00883 Cytosol aminopeptidase family, catalytic domain vm_RS02435 PF02789 Cytosol aminopeptidase family, N-terminal domain vm_RS02440 PF03739 Lipopolysaccharide export system permease LptF/LptG vm_RS02445 PF03739 Lipopolysaccharide export system permease LptF/LptG vm_RS02460 PF00072 Response regulator receiver domain vm_RS02500 PF00694 Aconitase C-terminal domain vm_RS02505 PF00330 Aconitase family (aconitate hydratase) vm_RS02510 PF00180 Isocitrate/isopropylmalate dehydrogenase vm_RS02515 PF08502 LeuA allosteric (dimerisation) domain vm_RS02515 PF00682 HMGL-like vm_RS02525 PF01569 PAP2 superfamily vm_RS02535 PF03466 LysR substrate binding domain vm_RS02535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS02540 PF00501 AMP-binding enzyme vm_RS02545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain vm_RS02545 PF00205 Thiamine pyrophosphate enzyme, central domain vm_RS02545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain vm_RS02550 PF10369 Small subunit of acetolactate synthase vm_RS02555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain vm_RS02555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain vm_RS02555 PF01842 ACT domain vm_RS02560 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) vm_RS02565 PF01812 5-formyltetrahydrofolate cyclo-ligase family vm_RS02575 PF05164 Cell division protein ZapA vm_RS02580 PF03695 Uncharacterised protein family (UPF0149) vm_RS02585 PF01494 FAD binding domain vm_RS02590 PF01494 FAD binding domain vm_RS02605 PF03937 Flavinator of succinate dehydrogenase vm_RS02615 PF00890 FAD binding domain vm_RS02615 PF02910 Fumarate reductase flavoprotein C-term vm_RS02625 PF08281 Sigma-70, region 4 vm_RS02625 PF04542 Sigma-70 region 2 vm_RS02630 PF03873 Anti sigma-E protein RseA, C-terminal domain vm_RS02630 PF03872 Anti sigma-E protein RseA, N-terminal domain vm_RS02635 PF03888 MucB/RseB N-terminal domain vm_RS02635 PF17188 MucB/RseB C-terminal domain vm_RS02645 PF00679 Elongation factor G C-terminus vm_RS02645 PF06421 GTP-binding protein LepA C-terminus vm_RS02645 PF03144 Elongation factor Tu domain 2 vm_RS02645 PF00009 Elongation factor Tu GTP binding domain vm_RS02650 PF10502 Signal peptidase, peptidase S26 vm_RS02655 PF00035 Double-stranded RNA binding motif vm_RS02655 PF14622 Ribonuclease-III-like vm_RS02660 PF07650 KH domain vm_RS02660 PF01926 50S ribosome-binding GTPase vm_RS02665 PF02565 Recombination protein O C terminal vm_RS02665 PF11967 Recombination protein O N terminal vm_RS02670 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ vm_RS02675 PF01648 4'-phosphopantetheinyl transferase superfamily vm_RS02695 PF01627 Hpt domain vm_RS02695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS02695 PF00672 HAMP domain vm_RS02695 PF00512 His Kinase A (phospho-acceptor) domain vm_RS02695 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) vm_RS02695 PF00072 Response regulator receiver domain vm_RS02700 PF01938 TRAM domain vm_RS02700 PF05958 tRNA (Uracil-5-)-methyltransferase vm_RS02705 PF02824 TGS domain vm_RS02705 PF13291 ACT domain vm_RS02705 PF04607 Region found in RelA / SpoT proteins vm_RS02710 PF03819 MazG nucleotide pyrophosphohydrolase domain vm_RS02720 PF00117 Glutamine amidotransferase class-I vm_RS02720 PF06418 CTP synthase N-terminus vm_RS02725 PF00113 Enolase, C-terminal TIM barrel domain vm_RS02725 PF03952 Enolase, N-terminal domain vm_RS02735 PF03222 Tryptophan/tyrosine permease family vm_RS02740 PF01212 Beta-eliminating lyase vm_RS02745 PF01966 HD domain vm_RS02745 PF01743 Poly A polymerase head domain vm_RS02745 PF12627 Probable RNA and SrmB- binding site of polymerase A vm_RS02750 PF13401 AAA domain vm_RS02750 PF01471 Putative peptidoglycan binding domain vm_RS02760 PF08239 Bacterial SH3 domain vm_RS02765 PF01384 Phosphate transporter family vm_RS02770 PF01865 Protein of unknown function DUF47 vm_RS02775 PF01928 CYTH domain vm_RS02780 PF00027 Cyclic nucleotide-binding domain vm_RS02780 PF00520 Ion transport protein vm_RS02785 PF00672 HAMP domain vm_RS02785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS02785 PF02743 Cache domain vm_RS02790 PF08335 GlnD PII-uridylyltransferase vm_RS02790 PF03710 Glutamate-ammonia ligase adenylyltransferase vm_RS02795 PF01467 Cytidylyltransferase-like vm_RS02795 PF00294 pfkB family carbohydrate kinase vm_RS02800 PF02321 Outer membrane efflux protein vm_RS02805 PF00293 NUDIX domain vm_RS02810 PF06853 Protein of unknown function (DUF1249) vm_RS02815 PF00149 Calcineurin-like phosphoesterase vm_RS02820 PF05728 Uncharacterised protein family (UPF0227) vm_RS02825 PF00986 DNA gyrase B subunit, carboxyl terminus vm_RS02825 PF01751 Toprim domain vm_RS02825 PF00204 DNA gyrase B vm_RS02825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS02830 PF00521 DNA gyrase/topoisomerase IV, subunit A vm_RS02830 PF03989 DNA gyrase C-terminal domain, beta-propeller vm_RS02835 PF03884 DNA gyrase inhibitor YacG vm_RS02840 PF07072 Cell division protein vm_RS02845 PF01121 Dephospho-CoA kinase vm_RS02850 PF01478 Type IV leader peptidase family vm_RS02850 PF06750 Bacterial Peptidase A24 N-terminal domain vm_RS02855 PF00482 Type II secretion system (T2SS), protein F vm_RS02860 PF00437 Type II/IV secretion system protein vm_RS02860 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain vm_RS02865 PF00114 Pilin (bacterial filament) vm_RS02865 PF07963 Prokaryotic N-terminal methylation motif vm_RS02870 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain vm_RS02870 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain vm_RS02875 PF01510 N-acetylmuramoyl-L-alanine amidase vm_RS02880 PF00258 Flavodoxin vm_RS02885 PF00589 Phage integrase family vm_RS02885 PF02899 Phage integrase, N-terminal SAM-like domain vm_RS02890 PF13098 Thioredoxin-like domain vm_RS02890 PF10411 Disulfide bond isomerase protein N-terminus vm_RS02895 PF02272 DHHA1 domain vm_RS02895 PF01368 DHH family vm_RS02895 PF17768 RecJ OB domain vm_RS02900 PF02833 DHHA2 domain vm_RS02900 PF01368 DHH family vm_RS02905 PF02872 5'-nucleotidase, C-terminal domain vm_RS02905 PF00149 Calcineurin-like phosphoesterase vm_RS02910 PF07729 FCD domain vm_RS02910 PF00392 Bacterial regulatory proteins, gntR family vm_RS02915 PF00456 Transketolase, thiamine diphosphate binding domain vm_RS02915 PF17831 Pyruvate dehydrogenase E1 component middle domain vm_RS02920 PF00364 Biotin-requiring enzyme vm_RS02920 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) vm_RS02920 PF02817 e3 binding domain vm_RS02925 PF07992 Pyridine nucleotide-disulphide oxidoreductase vm_RS02925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain vm_RS02935 PF01795 MraW methylase family vm_RS02940 PF04999 Cell division protein FtsL vm_RS02945 PF00905 Penicillin binding protein transpeptidase domain vm_RS02945 PF03717 Penicillin-binding Protein dimerisation domain vm_RS02950 PF02875 Mur ligase family, glutamate ligase domain vm_RS02950 PF08245 Mur ligase middle domain vm_RS02950 PF01225 Mur ligase family, catalytic domain vm_RS02955 PF01225 Mur ligase family, catalytic domain vm_RS02955 PF02875 Mur ligase family, glutamate ligase domain vm_RS02955 PF08245 Mur ligase middle domain vm_RS02960 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 vm_RS02960 PF00953 Glycosyl transferase family 4 vm_RS02965 PF08245 Mur ligase middle domain vm_RS02965 PF02875 Mur ligase family, glutamate ligase domain vm_RS02970 PF01098 Cell cycle protein vm_RS02975 PF04101 Glycosyltransferase family 28 C-terminal domain vm_RS02975 PF03033 Glycosyltransferase family 28 N-terminal domain vm_RS02980 PF08245 Mur ligase middle domain vm_RS02980 PF02875 Mur ligase family, glutamate ligase domain vm_RS02980 PF01225 Mur ligase family, catalytic domain vm_RS02985 PF08478 POTRA domain, FtsQ-type vm_RS02985 PF03799 Cell division protein FtsQ vm_RS02990 PF02491 SHS2 domain inserted in FTSA vm_RS02995 PF12327 FtsZ family, C-terminal domain vm_RS02995 PF00091 Tubulin/FtsZ family, GTPase domain vm_RS03000 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase vm_RS03010 PF07516 SecA Wing and Scaffold domain vm_RS03010 PF02810 SEC-C motif vm_RS03010 PF07517 SecA DEAD-like domain vm_RS03010 PF01043 SecA preprotein cross-linking domain vm_RS03015 PF00293 NUDIX domain vm_RS03020 PF05173 Dihydrodipicolinate reductase, C-terminus vm_RS03020 PF01113 Dihydrodipicolinate reductase, N-terminus vm_RS03025 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain vm_RS03025 PF00117 Glutamine amidotransferase class-I vm_RS03030 PF02142 MGS-like domain vm_RS03030 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain vm_RS03030 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain vm_RS03035 PF01925 Sulfite exporter TauE/SafE vm_RS03040 PF03466 LysR substrate binding domain vm_RS03040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS03045 PF03458 UPF0126 domain vm_RS03050 PF01497 Periplasmic binding protein vm_RS03060 PF01048 Phosphorylase superfamily vm_RS03070 PF07992 Pyridine nucleotide-disulphide oxidoreductase vm_RS03070 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster vm_RS03075 PF00310 Glutamine amidotransferases class-II vm_RS03075 PF04898 Glutamate synthase central domain vm_RS03075 PF01645 Conserved region in glutamate synthase vm_RS03075 PF01493 GXGXG motif vm_RS03080 PF07992 Pyridine nucleotide-disulphide oxidoreductase vm_RS03080 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster vm_RS03085 PF01493 GXGXG motif vm_RS03085 PF01645 Conserved region in glutamate synthase vm_RS03085 PF04898 Glutamate synthase central domain vm_RS03085 PF00310 Glutamine amidotransferases class-II vm_RS03090 PF04055 Radical SAM superfamily vm_RS03090 PF16199 Radical_SAM C-terminal domain vm_RS03095 PF00563 EAL domain vm_RS03095 PF00360 Phytochrome region vm_RS03095 PF01590 GAF domain vm_RS03095 PF00990 Diguanylate cyclase, GGDEF domain vm_RS03100 PF00989 PAS fold vm_RS03100 PF00512 His Kinase A (phospho-acceptor) domain vm_RS03100 PF18415 Histidine kinase receptor ArcB trans-membrane domain vm_RS03100 PF01627 Hpt domain vm_RS03100 PF00072 Response regulator receiver domain vm_RS03100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS03105 PF00486 Transcriptional regulatory protein, C terminal vm_RS03105 PF00072 Response regulator receiver domain vm_RS03115 PF03737 Aldolase/RraA vm_RS03125 PF03447 Homoserine dehydrogenase, NAD binding domain vm_RS03125 PF00742 Homoserine dehydrogenase vm_RS03125 PF13840 ACT domain vm_RS03125 PF01842 ACT domain vm_RS03125 PF00696 Amino acid kinase family vm_RS03130 PF00288 GHMP kinases N terminal domain vm_RS03130 PF08544 GHMP kinases C terminal vm_RS03135 PF14821 Threonine synthase N terminus vm_RS03135 PF00291 Pyridoxal-phosphate dependent enzyme vm_RS03140 PF01228 Glycine radical vm_RS03145 PF01261 Xylose isomerase-like TIM barrel vm_RS03150 PF03167 Uracil DNA glycosylase superfamily vm_RS03170 PF01235 Sodium:alanine symporter family vm_RS03175 PF03883 Peroxide stress protein YaaA vm_RS03180 PF01026 TatD related DNase vm_RS03185 PF07662 Na+ dependent nucleoside transporter C-terminus vm_RS03185 PF01773 Na+ dependent nucleoside transporter N-terminus vm_RS03185 PF07670 Nucleoside recognition vm_RS03195 PF01791 DeoC/LacD family aldolase vm_RS03200 PF00591 Glycosyl transferase family, a/b domain vm_RS03200 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain vm_RS03200 PF02885 Glycosyl transferase family, helical bundle domain vm_RS03205 PF01676 Metalloenzyme superfamily vm_RS03210 PF01048 Phosphorylase superfamily vm_RS03220 PF18429 Domain of unknown function (DUF5609) vm_RS03230 PF18073 Rubredoxin metal binding domain vm_RS03235 PF00009 Elongation factor Tu GTP binding domain vm_RS03235 PF00679 Elongation factor G C-terminus vm_RS03235 PF14492 Elongation Factor G, domain II vm_RS03235 PF03764 Elongation factor G, domain IV vm_RS03235 PF03144 Elongation factor Tu domain 2 vm_RS03240 PF03466 LysR substrate binding domain vm_RS03240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS03250 PF00501 AMP-binding enzyme vm_RS03255 PF00072 Response regulator receiver domain vm_RS03265 PF16353 Domain of unknown function(DUF4981) vm_RS03265 PF02837 Glycosyl hydrolases family 2, sugar binding domain vm_RS03265 PF02836 Glycosyl hydrolases family 2, TIM barrel domain vm_RS03265 PF00703 Glycosyl hydrolases family 2 vm_RS03265 PF02929 Beta galactosidase small chain vm_RS03270 PF00356 Bacterial regulatory proteins, lacI family vm_RS03275 PF01588 Putative tRNA binding domain vm_RS03285 PF01544 CorA-like Mg2+ transporter protein vm_RS03290 PF02080 TrkA-C domain vm_RS03290 PF08443 RimK-like ATP-grasp domain vm_RS03290 PF18030 RimK PreATP-grasp domain vm_RS03295 PF00583 Acetyltransferase (GNAT) family vm_RS03305 PF14602 Hexapeptide repeat of succinyl-transferase vm_RS03305 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle vm_RS03315 PF07130 YebG protein vm_RS03330 PF17946 RecC C-terminal domain vm_RS03335 PF13361 UvrD-like helicase C-terminal domain vm_RS03335 PF00580 UvrD/REP helicase N-terminal domain vm_RS03335 PF12705 PD-(D/E)XK nuclease superfamily vm_RS03340 PF13538 UvrD-like helicase C-terminal domain vm_RS03355 PF00696 Amino acid kinase family vm_RS03355 PF00583 Acetyltransferase (GNAT) family vm_RS03365 PF03562 MltA specific insert domain vm_RS03365 PF06725 3D domain vm_RS03370 PF00899 ThiF family vm_RS03375 PF02657 Fe-S metabolism associated domain vm_RS03380 PF00266 Aminotransferase class-V vm_RS03385 PF01965 DJ-1/PfpI family vm_RS03390 PF02558 Ketopantoate reductase PanE/ApbA vm_RS03390 PF08546 Ketopantoate reductase PanE/ApbA C terminal vm_RS03395 PF03502 Nucleoside-specific channel-forming protein, Tsx vm_RS03405 PF04542 Sigma-70 region 2 vm_RS03405 PF04545 Sigma-70, region 4 vm_RS03415 PF07690 Major Facilitator Superfamily vm_RS03420 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD vm_RS03430 PF05175 Methyltransferase small domain vm_RS03435 PF01722 BolA-like protein vm_RS03440 PF11973 NQRA C-terminal domain vm_RS03440 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) vm_RS03445 PF03116 NQR2, RnfD, RnfE family vm_RS03450 PF04205 FMN-binding domain vm_RS03455 PF02508 Rnf-Nqr subunit, membrane protein vm_RS03460 PF02508 Rnf-Nqr subunit, membrane protein vm_RS03465 PF00970 Oxidoreductase FAD-binding domain vm_RS03465 PF00111 2Fe-2S iron-sulfur cluster binding domain vm_RS03465 PF00175 Oxidoreductase NAD-binding domain vm_RS03470 PF02424 ApbE family vm_RS03480 PF00817 impB/mucB/samB family vm_RS03480 PF11798 IMS family HHH motif vm_RS03495 PF00209 Sodium:neurotransmitter symporter family vm_RS03505 PF08443 RimK-like ATP-grasp domain vm_RS03505 PF18030 RimK PreATP-grasp domain vm_RS03510 PF08443 RimK-like ATP-grasp domain vm_RS03510 PF18030 RimK PreATP-grasp domain vm_RS03515 PF01546 Peptidase family M20/M25/M40 vm_RS03515 PF07687 Peptidase dimerisation domain vm_RS03520 PF00860 Permease family vm_RS03525 PF00156 Phosphoribosyl transferase domain vm_RS03530 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) vm_RS03535 PF07417 Sigma factor-binding transcriptional regulator Crl vm_RS03540 PF01472 PUA domain vm_RS03540 PF00696 Amino acid kinase family vm_RS03545 PF00171 Aldehyde dehydrogenase family vm_RS03550 PF03477 ATP cone domain vm_RS03555 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region vm_RS03555 PF01872 RibD C-terminal domain vm_RS03560 PF00677 Lumazine binding domain vm_RS03565 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase vm_RS03565 PF00925 GTP cyclohydrolase II vm_RS03570 PF00885 6,7-dimethyl-8-ribityllumazine synthase vm_RS03575 PF01029 NusB family vm_RS03580 PF02769 AIR synthase related protein, C-terminal domain vm_RS03580 PF00586 AIR synthase related protein, N-terminal domain vm_RS03585 PF04608 Phosphatidylglycerophosphatase A vm_RS03590 PF11944 Protein of unknown function (DUF3461) vm_RS03595 PF01966 HD domain vm_RS03595 PF01909 Nucleotidyltransferase domain vm_RS03595 PF08335 GlnD PII-uridylyltransferase vm_RS03600 PF00557 Metallopeptidase family M24 vm_RS03605 PF00318 Ribosomal protein S2 vm_RS03610 PF00889 Elongation factor TS vm_RS03615 PF00696 Amino acid kinase family vm_RS03620 PF01765 Ribosome recycling factor vm_RS03625 PF01255 Putative undecaprenyl diphosphate synthase vm_RS03635 PF13288 DXP reductoisomerase C-terminal domain vm_RS03635 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain vm_RS03635 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase vm_RS03640 PF17820 PDZ domain vm_RS03640 PF02163 Peptidase family M50 vm_RS03645 PF01103 Surface antigen vm_RS03645 PF07244 Surface antigen variable number repeat vm_RS03650 PF03938 Outer membrane protein (OmpH-like) vm_RS03655 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD vm_RS03655 PF00132 Bacterial transferase hexapeptide (six repeats) vm_RS03660 PF07977 FabA-like domain vm_RS03665 PF00132 Bacterial transferase hexapeptide (six repeats) vm_RS03665 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 vm_RS03670 PF02684 Lipid-A-disaccharide synthetase vm_RS03675 PF01351 Ribonuclease HII vm_RS03680 PF14579 Helix-hairpin-helix motif vm_RS03680 PF17657 Bacterial DNA polymerase III alpha subunit finger domain vm_RS03680 PF02811 PHP domain vm_RS03680 PF01336 OB-fold nucleic acid binding domain vm_RS03680 PF07733 Bacterial DNA polymerase III alpha NTPase domain vm_RS03685 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit vm_RS03690 PF01171 PP-loop family vm_RS03690 PF11734 TilS substrate C-terminal domain vm_RS03690 PF09179 TilS substrate binding domain vm_RS03695 PF00034 Cytochrome c vm_RS03700 PF00543 Nitrogen regulatory protein P-II vm_RS03705 PF03372 Endonuclease/Exonuclease/phosphatase family vm_RS03710 PF01464 Transglycosylase SLT domain vm_RS03710 PF01476 LysM domain vm_RS03715 PF00753 Metallo-beta-lactamase superfamily vm_RS03715 PF16123 Hydroxyacylglutathione hydrolase C-terminus vm_RS03720 PF08241 Methyltransferase domain vm_RS03725 PF00075 RNase H vm_RS03730 PF00929 Exonuclease vm_RS03740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain vm_RS03740 PF02770 Acyl-CoA dehydrogenase, middle domain vm_RS03740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain vm_RS03740 PF09317 Domain of unknown function (DUF1974) vm_RS03745 PF13580 SIS domain vm_RS03750 PF13230 Glutamine amidotransferases class-II vm_RS03755 PF00551 Formyl transferase vm_RS03760 PF00586 AIR synthase related protein, N-terminal domain vm_RS03760 PF02769 AIR synthase related protein, C-terminal domain vm_RS03770 PF00849 RNA pseudouridylate synthase vm_RS03770 PF01479 S4 domain vm_RS03775 PF01713 Smr domain vm_RS03795 PF00728 Glycosyl hydrolase family 20, catalytic domain vm_RS03795 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain vm_RS03795 PF03173 Putative carbohydrate binding domain vm_RS03795 PF02838 Glycosyl hydrolase family 20, domain 2 vm_RS03805 PF00403 Heavy-metal-associated domain vm_RS03810 PF00749 tRNA synthetases class I (E and Q), catalytic domain vm_RS03815 PF00691 OmpA family vm_RS03815 PF01389 OmpA-like transmembrane domain vm_RS03860 PF00072 Response regulator receiver domain vm_RS03860 PF01584 CheW-like domain vm_RS03865 PF01739 CheR methyltransferase, SAM binding domain vm_RS03865 PF03705 CheR methyltransferase, all-alpha domain vm_RS03870 PF00460 Flagella basal body rod protein vm_RS03875 PF00460 Flagella basal body rod protein vm_RS03875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vm_RS03880 PF03963 Flagellar hook capping protein - N-terminal region vm_RS03880 PF13860 FlgD Ig-like domain vm_RS03880 PF13861 FlgD Tudor-like domain vm_RS03885 PF07559 Flagellar basal body protein FlaE vm_RS03885 PF00460 Flagella basal body rod protein vm_RS03885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vm_RS03890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vm_RS03890 PF00460 Flagella basal body rod protein vm_RS03895 PF00460 Flagella basal body rod protein vm_RS03895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vm_RS03900 PF02107 Flagellar L-ring protein vm_RS03905 PF02119 Flagellar P-ring protein vm_RS03910 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase vm_RS03910 PF10135 Rod binding protein vm_RS03915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal vm_RS03915 PF07196 Flagellin hook IN motif vm_RS03925 PF00669 Bacterial flagellin N-terminal helical region vm_RS03925 PF07196 Flagellin hook IN motif vm_RS03925 PF00700 Bacterial flagellin C-terminal helical region vm_RS03930 PF00700 Bacterial flagellin C-terminal helical region vm_RS03930 PF00669 Bacterial flagellin N-terminal helical region vm_RS03930 PF07196 Flagellin hook IN motif vm_RS04015 PF01926 50S ribosome-binding GTPase vm_RS04015 PF06071 Protein of unknown function (DUF933) vm_RS04020 PF01195 Peptidyl-tRNA hydrolase vm_RS04025 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase vm_RS04025 PF14572 Phosphoribosyl synthetase-associated domain vm_RS04030 PF00288 GHMP kinases N terminal domain vm_RS04030 PF08544 GHMP kinases C terminal vm_RS04035 PF03550 Outer membrane lipoprotein LolB vm_RS04040 PF01488 Shikimate / quinate 5-dehydrogenase vm_RS04040 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain vm_RS04040 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain vm_RS04045 PF00472 RF-1 domain vm_RS04045 PF03462 PCRF domain vm_RS04050 PF17827 PrmC N-terminal domain vm_RS04050 PF13847 Methyltransferase domain vm_RS04055 PF04247 Invasion gene expression up-regulator, SirB vm_RS04060 PF13369 Transglutaminase-like superfamily vm_RS04065 PF00793 DAHP synthetase I family vm_RS04070 PF00149 Calcineurin-like phosphoesterase vm_RS04070 PF02872 5'-nucleotidase, C-terminal domain vm_RS04075 PF04073 Aminoacyl-tRNA editing domain vm_RS04080 PF00860 Permease family vm_RS04095 PF03358 NADPH-dependent FMN reductase vm_RS04100 PF03960 ArsC family vm_RS04105 PF13181 Tetratricopeptide repeat vm_RS04105 PF01435 Peptidase family M48 vm_RS04115 PF01594 AI-2E family transporter vm_RS04120 PF00672 HAMP domain vm_RS04120 PF02743 Cache domain vm_RS04120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS04145 PF00578 AhpC/TSA family vm_RS04170 PF00578 AhpC/TSA family vm_RS04180 PF00701 Dihydrodipicolinate synthetase family vm_RS04185 PF06804 NlpB/DapX lipoprotein vm_RS04195 PF02557 D-alanyl-D-alanine carboxypeptidase vm_RS04200 PF07687 Peptidase dimerisation domain vm_RS04200 PF01546 Peptidase family M20/M25/M40 vm_RS04205 PF03960 ArsC family vm_RS04220 PF11143 Protein of unknown function (DUF2919) vm_RS04225 PF04261 Dyp-type peroxidase family vm_RS04230 PF00700 Bacterial flagellin C-terminal helical region vm_RS04230 PF07196 Flagellin hook IN motif vm_RS04230 PF00669 Bacterial flagellin N-terminal helical region vm_RS04235 PF00700 Bacterial flagellin C-terminal helical region vm_RS04235 PF07196 Flagellin hook IN motif vm_RS04235 PF00669 Bacterial flagellin N-terminal helical region vm_RS04240 PF00700 Bacterial flagellin C-terminal helical region vm_RS04240 PF00669 Bacterial flagellin N-terminal helical region vm_RS04240 PF07196 Flagellin hook IN motif vm_RS04245 PF03646 FlaG protein vm_RS04250 PF07196 Flagellin hook IN motif vm_RS04250 PF07195 Flagellar hook-associated protein 2 C-terminus vm_RS04250 PF02465 Flagellar hook-associated protein 2 N-terminus vm_RS04260 PF02561 Flagellar protein FliS vm_RS04265 PF00158 Sigma-54 interaction domain vm_RS04265 PF02954 Bacterial regulatory protein, Fis family vm_RS04265 PF06490 Flagellar regulatory protein FleQ vm_RS04270 PF13188 PAS domain vm_RS04270 PF00512 His Kinase A (phospho-acceptor) domain vm_RS04270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS04275 PF00072 Response regulator receiver domain vm_RS04275 PF02954 Bacterial regulatory protein, Fis family vm_RS04275 PF00158 Sigma-54 interaction domain vm_RS04280 PF02049 Flagellar hook-basal body complex protein FliE vm_RS04285 PF01514 Secretory protein of YscJ/FliF family vm_RS04285 PF08345 Flagellar M-ring protein C-terminal vm_RS04290 PF01706 FliG C-terminal domain vm_RS04290 PF14841 FliG middle domain vm_RS04290 PF14842 FliG N-terminal domain vm_RS04295 PF02108 Flagellar assembly protein FliH vm_RS04300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain vm_RS04300 PF18269 T3SS EscN ATPase C-terminal domain vm_RS04320 PF02154 Flagellar motor switch protein FliM vm_RS04320 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term vm_RS04325 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term vm_RS04330 PF04347 Flagellar biosynthesis protein, FliO vm_RS04335 PF00813 FliP family vm_RS04340 PF01313 Bacterial export proteins, family 3 vm_RS04345 PF01311 Bacterial export proteins, family 1 vm_RS04350 PF01312 FlhB HrpN YscU SpaS Family vm_RS04355 PF01713 Smr domain vm_RS04360 PF05175 Methyltransferase small domain vm_RS04370 PF01264 Chorismate synthase vm_RS04375 PF03458 UPF0126 domain vm_RS04380 PF04315 Elongation factor P hydroxylase vm_RS04385 PF08891 YfcL protein vm_RS04390 PF03358 NADPH-dependent FMN reductase vm_RS04395 PF05430 S-adenosyl-L-methionine-dependent methyltransferase vm_RS04395 PF01266 FAD dependent oxidoreductase vm_RS04400 PF02801 Beta-ketoacyl synthase, C-terminal domain vm_RS04400 PF00109 Beta-ketoacyl synthase, N-terminal domain vm_RS04405 PF11890 Domain of unknown function (DUF3410) vm_RS04405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain vm_RS04405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain vm_RS04410 PF01118 Semialdehyde dehydrogenase, NAD binding domain vm_RS04410 PF02774 Semialdehyde dehydrogenase, dimerisation domain vm_RS04415 PF01609 Transposase DDE domain vm_RS04415 PF14706 Transposase DNA-binding vm_RS04415 PF02281 Transposase Tn5 dimerisation domain vm_RS04420 PF01475 Ferric uptake regulator family vm_RS04430 PF03466 LysR substrate binding domain vm_RS04430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS04435 PF03788 LrgA family vm_RS04440 PF04172 LrgB-like family vm_RS04445 PF00258 Flavodoxin vm_RS04455 PF12697 Alpha/beta hydrolase family vm_RS04460 PF17206 SeqA protein N-terminal domain vm_RS04460 PF03925 SeqA protein C-terminal domain vm_RS04465 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I vm_RS04465 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain vm_RS04465 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II vm_RS04465 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III vm_RS04475 PF01784 NIF3 (NGG1p interacting factor 3) vm_RS04480 PF00285 Citrate synthase, C-terminal domain vm_RS04485 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit vm_RS04490 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit vm_RS04495 PF02910 Fumarate reductase flavoprotein C-term vm_RS04495 PF00890 FAD binding domain vm_RS04500 PF13085 2Fe-2S iron-sulfur cluster binding domain vm_RS04505 PF16870 2-oxoglutarate dehydrogenase C-terminal vm_RS04505 PF16078 2-oxoglutarate dehydrogenase N-terminus vm_RS04505 PF00676 Dehydrogenase E1 component vm_RS04505 PF02779 Transketolase, pyrimidine binding domain vm_RS04510 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) vm_RS04510 PF00364 Biotin-requiring enzyme vm_RS04510 PF02817 e3 binding domain vm_RS04515 PF08442 ATP-grasp domain vm_RS04515 PF00549 CoA-ligase vm_RS04520 PF02629 CoA binding domain vm_RS04520 PF00549 CoA-ligase vm_RS04525 PF00950 ABC 3 transport family vm_RS04530 PF00005 ABC transporter vm_RS04535 PF01297 Zinc-uptake complex component A periplasmic vm_RS04540 PF02311 AraC-like ligand binding domain vm_RS04540 PF12833 Helix-turn-helix domain vm_RS04545 PF04023 FeoA domain vm_RS04550 PF07664 Ferrous iron transport protein B C terminus vm_RS04550 PF02421 Ferrous iron transport protein B vm_RS04550 PF07670 Nucleoside recognition vm_RS04560 PF02281 Transposase Tn5 dimerisation domain vm_RS04560 PF14706 Transposase DNA-binding vm_RS04560 PF01609 Transposase DDE domain vm_RS04570 PF03485 Arginyl tRNA synthetase N terminal domain vm_RS04570 PF05746 DALR anticodon binding domain vm_RS04570 PF00750 tRNA synthetases class I (R) vm_RS04580 PF05193 Peptidase M16 inactive domain vm_RS04580 PF00675 Insulinase (Peptidase family M16) vm_RS04585 PF00300 Histidine phosphatase superfamily (branch 1) vm_RS04590 PF00771 FHIPEP family vm_RS04595 PF00448 SRP54-type protein, GTPase domain vm_RS04600 PF10609 NUBPL iron-transfer P-loop NTPase vm_RS04605 PF04542 Sigma-70 region 2 vm_RS04605 PF04545 Sigma-70, region 4 vm_RS04605 PF04539 Sigma-70 region 3 vm_RS04610 PF00072 Response regulator receiver domain vm_RS04615 PF04344 Chemotaxis phosphatase, CheZ vm_RS04620 PF00072 Response regulator receiver domain vm_RS04620 PF01627 Hpt domain vm_RS04620 PF02895 Signal transducing histidine kinase, homodimeric domain vm_RS04620 PF01584 CheW-like domain vm_RS04620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS04625 PF01339 CheB methylesterase vm_RS04625 PF00072 Response regulator receiver domain vm_RS04630 PF13614 AAA domain vm_RS04640 PF01584 CheW-like domain vm_RS04650 PF00005 ABC transporter vm_RS04655 PF03379 CcmB protein vm_RS04660 PF01578 Cytochrome C assembly protein vm_RS04670 PF03100 CcmE vm_RS04675 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal vm_RS04675 PF01578 Cytochrome C assembly protein vm_RS04680 PF08534 Redoxin vm_RS04685 PF03918 Cytochrome C biogenesis protein vm_RS04695 PF04333 MlaA lipoprotein vm_RS04710 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain vm_RS04710 PF02777 Iron/manganese superoxide dismutases, C-terminal domain vm_RS04715 PF00462 Glutaredoxin vm_RS04720 PF01751 Toprim domain vm_RS04720 PF01131 DNA topoisomerase vm_RS04725 PF00850 Histone deacetylase domain vm_RS04740 PF00106 short chain dehydrogenase vm_RS04760 PF11893 Domain of unknown function (DUF3413) vm_RS04760 PF00884 Sulfatase vm_RS04765 PF07208 Protein of unknown function (DUF1414) vm_RS04770 PF04245 37-kD nucleoid-associated bacterial protein vm_RS04780 PF03553 Na+/H+ antiporter family vm_RS04785 PF02774 Semialdehyde dehydrogenase, dimerisation domain vm_RS04785 PF01118 Semialdehyde dehydrogenase, NAD binding domain vm_RS04790 PF00027 Cyclic nucleotide-binding domain vm_RS04790 PF00520 Ion transport protein vm_RS04795 PF01914 MarC family integral membrane protein vm_RS04800 PF00171 Aldehyde dehydrogenase family vm_RS04800 PF00465 Iron-containing alcohol dehydrogenase vm_RS04810 PF01740 STAS domain vm_RS04810 PF00916 Sulfate permease family vm_RS04815 PF00575 S1 RNA binding domain vm_RS04815 PF10150 Ribonuclease E/G family vm_RS04815 PF12111 Polyribonucleotide phosphorylase C terminal vm_RS04825 PF00849 RNA pseudouridylate synthase vm_RS04825 PF01479 S4 domain vm_RS04830 PF02545 Maf-like protein vm_RS04835 PF02620 Large ribosomal RNA subunit accumulation protein YceD vm_RS04840 PF01783 Ribosomal L32p protein family vm_RS04845 PF02504 Fatty acid synthesis protein vm_RS04850 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III vm_RS04850 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal vm_RS04855 PF00698 Acyl transferase domain vm_RS04865 PF00550 Phosphopantetheine attachment site vm_RS04870 PF02801 Beta-ketoacyl synthase, C-terminal domain vm_RS04870 PF00109 Beta-ketoacyl synthase, N-terminal domain vm_RS04875 PF01063 Amino-transferase class IV vm_RS04880 PF02618 YceG-like family vm_RS04885 PF02223 Thymidylate kinase vm_RS04890 PF09115 DNA polymerase III, delta subunit, C terminal vm_RS04895 PF01026 TatD related DNase vm_RS04900 PF02378 Phosphotransferase system, EIIC vm_RS04900 PF00367 phosphotransferase system, EIIB vm_RS04910 PF00209 Sodium:neurotransmitter symporter family vm_RS04920 PF01734 Patatin-like phospholipase vm_RS04925 PF02887 Pyruvate kinase, alpha/beta domain vm_RS04925 PF00224 Pyruvate kinase, barrel domain vm_RS04930 PF00480 ROK family vm_RS04935 PF00072 Response regulator receiver domain vm_RS04935 PF01584 CheW-like domain vm_RS04945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily vm_RS04965 PF13847 Methyltransferase domain vm_RS04975 PF01263 Aldose 1-epimerase vm_RS04980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain vm_RS04980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain vm_RS04985 PF01641 SelR domain vm_RS04995 PF07023 Protein of unknown function (DUF1315) vm_RS05000 PF17763 Glutaminase/Asparaginase C-terminal domain vm_RS05000 PF00710 Asparaginase, N-terminal vm_RS05005 PF01343 Peptidase family S49 vm_RS05010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family vm_RS05010 PF07992 Pyridine nucleotide-disulphide oxidoreductase vm_RS05015 PF01842 ACT domain vm_RS05015 PF00551 Formyl transferase vm_RS05025 PF04851 Type III restriction enzyme, res subunit vm_RS05025 PF13307 Helicase C-terminal domain vm_RS05030 PF00814 Glycoprotease family vm_RS05045 PF00561 alpha/beta hydrolase fold vm_RS05050 PF00501 AMP-binding enzyme vm_RS05050 PF13193 AMP-binding enzyme C-terminal domain vm_RS05055 PF01612 3'-5' exonuclease vm_RS05055 PF00570 HRDC domain vm_RS05065 PF01694 Rhomboid family vm_RS05065 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease vm_RS05075 PF13286 Phosphohydrolase-associated domain vm_RS05075 PF01966 HD domain vm_RS05085 PF00155 Aminotransferase class I and II vm_RS05090 PF00425 chorismate binding enzyme vm_RS05095 PF16582 Middle domain of thiamine pyrophosphate vm_RS05095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain vm_RS05095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain vm_RS05100 PF12697 Alpha/beta hydrolase family vm_RS05105 PF00378 Enoyl-CoA hydratase/isomerase vm_RS05110 PF13378 Enolase C-terminal domain-like vm_RS05115 PF13193 AMP-binding enzyme C-terminal domain vm_RS05115 PF00501 AMP-binding enzyme vm_RS05120 PF03594 Benzoate membrane transport protein vm_RS05125 PF01381 Helix-turn-helix vm_RS05125 PF07883 Cupin domain vm_RS05130 PF02743 Cache domain vm_RS05130 PF00672 HAMP domain vm_RS05130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS05135 PF07690 Major Facilitator Superfamily vm_RS05155 PF04170 NlpE N-terminal domain vm_RS05160 PF03776 Septum formation topological specificity factor MinE vm_RS05165 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain vm_RS05170 PF03775 Septum formation inhibitor MinC, C-terminal domain vm_RS05170 PF05209 Septum formation inhibitor MinC, N-terminal domain vm_RS05175 PF05166 YcgL domain vm_RS05180 PF13406 Transglycosylase SLT domain vm_RS05185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS05185 PF03466 LysR substrate binding domain vm_RS05190 PF01773 Na+ dependent nucleoside transporter N-terminus vm_RS05190 PF07662 Na+ dependent nucleoside transporter C-terminus vm_RS05190 PF07670 Nucleoside recognition vm_RS05195 PF00704 Glycosyl hydrolases family 18 vm_RS05205 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain vm_RS05205 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain vm_RS05225 PF01569 PAP2 superfamily vm_RS05255 PF00563 EAL domain vm_RS05255 PF00990 Diguanylate cyclase, GGDEF domain vm_RS05255 PF03707 Bacterial signalling protein N terminal repeat vm_RS05270 PF02696 Uncharacterized ACR, YdiU/UPF0061 family vm_RS05275 PF03480 Bacterial extracellular solute-binding protein, family 7 vm_RS05280 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component vm_RS05285 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vm_RS05290 PF00072 Response regulator receiver domain vm_RS05290 PF00158 Sigma-54 interaction domain vm_RS05290 PF02954 Bacterial regulatory protein, Fis family vm_RS05295 PF02743 Cache domain vm_RS05295 PF00512 His Kinase A (phospho-acceptor) domain vm_RS05295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS05305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase vm_RS05305 PF05698 Bacterial trigger factor protein (TF) C-terminus vm_RS05305 PF05697 Bacterial trigger factor protein (TF) vm_RS05310 PF00574 Clp protease vm_RS05315 PF10431 C-terminal, D2-small domain, of ClpB protein vm_RS05315 PF06689 ClpX C4-type zinc finger vm_RS05315 PF07724 AAA domain (Cdc48 subfamily) vm_RS05320 PF00004 ATPase family associated with various cellular activities (AAA) vm_RS05320 PF02190 ATP-dependent protease La (LON) substrate-binding domain vm_RS05320 PF05362 Lon protease (S16) C-terminal proteolytic domain vm_RS05325 PF00216 Bacterial DNA-binding protein vm_RS05330 PF13145 PPIC-type PPIASE domain vm_RS05340 PF01797 Transposase IS200 like vm_RS05345 PF02224 Cytidylate kinase vm_RS05350 PF00575 S1 RNA binding domain vm_RS05355 PF00216 Bacterial DNA-binding protein vm_RS05360 PF06305 Lipopolysaccharide assembly protein A domain vm_RS05365 PF18073 Rubredoxin metal binding domain vm_RS05370 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family vm_RS05375 PF00072 Response regulator receiver domain vm_RS05375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS05375 PF09308 LuxQ, periplasmic vm_RS05375 PF00512 His Kinase A (phospho-acceptor) domain vm_RS05385 PF02397 Bacterial sugar transferase vm_RS05390 PF00535 Glycosyl transferase family 2 vm_RS05395 PF00534 Glycosyl transferases group 1 vm_RS05410 PF00132 Bacterial transferase hexapeptide (six repeats) vm_RS05410 PF12464 Maltose acetyltransferase vm_RS05410 PF14602 Hexapeptide repeat of succinyl-transferase vm_RS05430 PF00534 Glycosyl transferases group 1 vm_RS05430 PF13439 Glycosyltransferase Family 4 vm_RS05440 PF00072 Response regulator receiver domain vm_RS05440 PF02954 Bacterial regulatory protein, Fis family vm_RS05440 PF00158 Sigma-54 interaction domain vm_RS05455 PF10531 SLBB domain vm_RS05455 PF02563 Polysaccharide biosynthesis/export protein vm_RS05485 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS05490 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS05490 PF12911 N-terminal TM domain of oligopeptide transport permease C vm_RS05495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vm_RS05500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vm_RS05500 PF00005 ABC transporter vm_RS05505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vm_RS05505 PF00005 ABC transporter vm_RS05520 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) vm_RS05530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS05530 PF03466 LysR substrate binding domain vm_RS05540 PF05222 Alanine dehydrogenase/PNT, N-terminal domain vm_RS05540 PF01262 Alanine dehydrogenase/PNT, C-terminal domain vm_RS05545 PF01037 Lrp/AsnC ligand binding domain vm_RS05550 PF01580 FtsK/SpoIIIE family vm_RS05550 PF17854 FtsK alpha domain vm_RS05550 PF13491 4TM region of DNA translocase FtsK/SpoIIIE vm_RS05550 PF09397 Ftsk gamma domain vm_RS05555 PF02600 Disulfide bond formation protein DsbB vm_RS05560 PF06450 Bacterial Na+/H+ antiporter B (NhaB) vm_RS05565 PF00392 Bacterial regulatory proteins, gntR family vm_RS05565 PF07840 FadR C-terminal domain vm_RS05580 PF01230 HIT domain vm_RS05595 PF08139 Prokaryotic membrane lipoprotein lipid attachment site vm_RS05595 PF13036 Peptidoglycan-synthase activator LpoB vm_RS05600 PF01636 Phosphotransferase enzyme family vm_RS05605 PF05728 Uncharacterised protein family (UPF0227) vm_RS05610 PF07992 Pyridine nucleotide-disulphide oxidoreductase vm_RS05625 PF02559 CarD-like/TRCF domain vm_RS05625 PF00271 Helicase conserved C-terminal domain vm_RS05625 PF00270 DEAD/DEAH box helicase vm_RS05625 PF17757 UvrB interaction domain vm_RS05625 PF03461 TRCF domain vm_RS05635 PF02687 FtsX-like permease family vm_RS05635 PF12704 MacB-like periplasmic core domain vm_RS05640 PF00005 ABC transporter vm_RS05645 PF12704 MacB-like periplasmic core domain vm_RS05645 PF02687 FtsX-like permease family vm_RS05655 PF00753 Metallo-beta-lactamase superfamily vm_RS05655 PF13567 Domain of unknown function (DUF4131) vm_RS05655 PF03772 Competence protein vm_RS05660 PF00664 ABC transporter transmembrane region vm_RS05660 PF00005 ABC transporter vm_RS05665 PF02606 Tetraacyldisaccharide-1-P 4'-kinase vm_RS05670 PF03966 Trm112p-like protein vm_RS05675 PF02348 Cytidylyltransferase vm_RS05685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS05685 PF00512 His Kinase A (phospho-acceptor) domain vm_RS05685 PF08521 Two-component sensor kinase N-terminal vm_RS05690 PF00072 Response regulator receiver domain vm_RS05690 PF00486 Transcriptional regulatory protein, C terminal vm_RS05695 PF02378 Phosphotransferase system, EIIC vm_RS05695 PF00367 phosphotransferase system, EIIB vm_RS05700 PF04293 SpoVR like protein vm_RS05705 PF04285 Protein of unknown function (DUF444) vm_RS05710 PF08298 PrkA AAA domain vm_RS05710 PF06798 PrkA serine protein kinase C-terminal domain vm_RS05715 PF03887 YfbU domain vm_RS05725 PF04055 Radical SAM superfamily vm_RS05730 PF02743 Cache domain vm_RS05730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS05730 PF00672 HAMP domain vm_RS05740 PF01228 Glycine radical vm_RS05740 PF02901 Pyruvate formate lyase-like vm_RS05750 PF00005 ABC transporter vm_RS05755 PF00497 Bacterial extracellular solute-binding proteins, family 3 vm_RS05760 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS05765 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS05770 PF03372 Endonuclease/Exonuclease/phosphatase family vm_RS05775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS05775 PF00672 HAMP domain vm_RS05780 PF10689 Protein of unknown function (DUF2496) vm_RS05785 PF07445 Primosomal replication protein priC vm_RS05790 PF01925 Sulfite exporter TauE/SafE vm_RS05795 PF13307 Helicase C-terminal domain vm_RS05795 PF06733 DEAD_2 vm_RS05805 PF02810 SEC-C motif vm_RS05810 PF08668 HDOD domain vm_RS05810 PF00563 EAL domain vm_RS05815 PF00149 Calcineurin-like phosphoesterase vm_RS05820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD vm_RS05825 PF09190 DALR domain vm_RS05825 PF01406 tRNA synthetases class I (C) catalytic domain vm_RS05830 PF02075 Crossover junction endodeoxyribonuclease RuvC vm_RS05835 PF01330 RuvA N terminal domain vm_RS05835 PF07499 RuvA, C-terminal domain vm_RS05840 PF17864 RuvB AAA lid domain vm_RS05840 PF05491 RuvB C-terminal winged helix domain vm_RS05840 PF05496 Holliday junction DNA helicase RuvB P-loop domain vm_RS05845 PF01654 Cytochrome bd terminal oxidase subunit I vm_RS05850 PF02322 Cytochrome bd terminal oxidase subunit II vm_RS05855 PF08173 Membrane bound YbgT-like protein vm_RS05865 PF03061 Thioesterase superfamily vm_RS05870 PF01618 MotA/TolQ/ExbB proton channel family vm_RS05875 PF02472 Biopolymer transport protein ExbD/TolR vm_RS05885 PF04052 TolB amino-terminal domain vm_RS05885 PF07676 WD40-like Beta Propeller Repeat vm_RS05890 PF00691 OmpA family vm_RS05900 PF02445 Quinolinate synthetase A protein vm_RS05910 PF00512 His Kinase A (phospho-acceptor) domain vm_RS05910 PF00072 Response regulator receiver domain vm_RS05910 PF09308 LuxQ, periplasmic vm_RS05910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS05915 PF06610 L-alanine exporter vm_RS05920 PF01238 Phosphomannose isomerase type I vm_RS05925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 vm_RS05925 PF02378 Phosphotransferase system, EIIC vm_RS05925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit vm_RS05930 PF12833 Helix-turn-helix domain vm_RS05940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit vm_RS05950 PF00392 Bacterial regulatory proteins, gntR family vm_RS05950 PF00155 Aminotransferase class I and II vm_RS05960 PF17678 Glycosyl hydrolase family 92 N-terminal domain vm_RS05960 PF07971 Glycosyl hydrolase family 92 vm_RS05965 PF07971 Glycosyl hydrolase family 92 vm_RS05965 PF17678 Glycosyl hydrolase family 92 N-terminal domain vm_RS05975 PF17678 Glycosyl hydrolase family 92 N-terminal domain vm_RS05975 PF07971 Glycosyl hydrolase family 92 vm_RS05980 PF17678 Glycosyl hydrolase family 92 N-terminal domain vm_RS05980 PF07971 Glycosyl hydrolase family 92 vm_RS06050 PF02195 ParB-like nuclease domain vm_RS06055 PF11922 Domain of unknown function (DUF3440) vm_RS06055 PF01507 Phosphoadenosine phosphosulfate reductase family vm_RS06060 PF02368 Bacterial Ig-like domain (group 2) vm_RS06060 PF11999 Protein of unknown function (DUF3494) vm_RS06065 PF00884 Sulfatase vm_RS06065 PF16347 Domain of unknown function (DUF4976) vm_RS06070 PF01970 Tripartite tricarboxylate transporter TctA family vm_RS06085 PF03466 LysR substrate binding domain vm_RS06085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS06100 PF13802 Galactose mutarotase-like vm_RS06100 PF16338 Domain of unknown function (DUF4968) vm_RS06100 PF01055 Glycosyl hydrolases family 31 vm_RS06100 PF17137 Domain of unknown function (DUF5110) vm_RS06105 PF02311 AraC-like ligand binding domain vm_RS06105 PF12833 Helix-turn-helix domain vm_RS06165 PF00437 Type II/IV secretion system protein vm_RS06190 PF02837 Glycosyl hydrolases family 2, sugar binding domain vm_RS06190 PF02929 Beta galactosidase small chain vm_RS06190 PF16353 Domain of unknown function(DUF4981) vm_RS06190 PF00703 Glycosyl hydrolases family 2 vm_RS06190 PF02836 Glycosyl hydrolases family 2, TIM barrel domain vm_RS06200 PF01380 SIS domain vm_RS06200 PF01418 Helix-turn-helix domain, rpiR family vm_RS06205 PF03606 C4-dicarboxylate anaerobic carrier vm_RS06210 PF07687 Peptidase dimerisation domain vm_RS06210 PF01546 Peptidase family M20/M25/M40 vm_RS06215 PF03575 Peptidase family S51 vm_RS06220 PF00563 EAL domain vm_RS06220 PF00196 Bacterial regulatory proteins, luxR family vm_RS06225 PF00873 AcrB/AcrD/AcrF family vm_RS06230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vm_RS06235 PF08362 YcdC-like protein, C-terminal region vm_RS06235 PF00440 Bacterial regulatory proteins, tetR family vm_RS06240 PF00171 Aldehyde dehydrogenase family vm_RS06245 PF07383 Protein of unknown function (DUF1496) vm_RS06255 PF00440 Bacterial regulatory proteins, tetR family vm_RS06255 PF16295 Tetracyclin repressor-like, C-terminal domain vm_RS06260 PF09317 Domain of unknown function (DUF1974) vm_RS06260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain vm_RS06260 PF02770 Acyl-CoA dehydrogenase, middle domain vm_RS06260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain vm_RS06265 PF12241 Trans-2-enoyl-CoA reductase catalytic region vm_RS06265 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase vm_RS06265 PF07055 Enoyl reductase FAD binding domain vm_RS06270 PF01176 Translation initiation factor 1A / IF-1 vm_RS06275 PF04377 Arginine-tRNA-protein transferase, C terminus vm_RS06275 PF04376 Arginine-tRNA-protein transferase, N terminus vm_RS06280 PF03588 Leucyl/phenylalanyl-tRNA protein transferase vm_RS06290 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) vm_RS06295 PF10692 Protein of unknown function (DUF2498) vm_RS06300 PF01751 Toprim domain vm_RS06300 PF08272 Topoisomerase I zinc-ribbon-like vm_RS06300 PF01131 DNA topoisomerase vm_RS06300 PF01396 Topoisomerase DNA binding C4 zinc finger vm_RS06310 PF08323 Starch synthase catalytic domain vm_RS06310 PF00534 Glycosyl transferases group 1 vm_RS06335 PF00356 Bacterial regulatory proteins, lacI family vm_RS06340 PF02613 Nitrate reductase delta subunit vm_RS06345 PF00072 Response regulator receiver domain vm_RS06345 PF00486 Transcriptional regulatory protein, C terminal vm_RS06350 PF14706 Transposase DNA-binding vm_RS06350 PF01609 Transposase DDE domain vm_RS06350 PF02281 Transposase Tn5 dimerisation domain vm_RS06355 PF02698 DUF218 domain vm_RS06360 PF13847 Methyltransferase domain vm_RS06365 PF17192 MukF middle domain vm_RS06365 PF17193 MukF C-terminal domain vm_RS06365 PF03882 MukF winged-helix domain vm_RS06370 PF04288 MukE-like family vm_RS06375 PF16330 MukB hinge domain vm_RS06375 PF04310 MukB N-terminal vm_RS06380 PF01037 Lrp/AsnC ligand binding domain vm_RS06385 PF01810 LysE type translocator vm_RS06390 PF08497 Radical SAM N-terminal vm_RS06390 PF04055 Radical SAM superfamily vm_RS06390 PF11842 Domain of unknown function (DUF3362) vm_RS06395 PF00563 EAL domain vm_RS06395 PF01590 GAF domain vm_RS06395 PF00990 Diguanylate cyclase, GGDEF domain vm_RS06395 PF00989 PAS fold vm_RS06400 PF05193 Peptidase M16 inactive domain vm_RS06400 PF00675 Insulinase (Peptidase family M16) vm_RS06415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS06415 PF03466 LysR substrate binding domain vm_RS06420 PF01717 Cobalamin-independent synthase, Catalytic domain vm_RS06420 PF08267 Cobalamin-independent synthase, N-terminal domain vm_RS06430 PF03795 YCII-related domain vm_RS06435 PF03061 Thioesterase superfamily vm_RS06440 PF04279 Intracellular septation protein A vm_RS06445 PF00990 Diguanylate cyclase, GGDEF domain vm_RS06445 PF00563 EAL domain vm_RS06445 PF03707 Bacterial signalling protein N terminal repeat vm_RS06455 PF02698 DUF218 domain vm_RS06460 PF01370 NAD dependent epimerase/dehydratase family vm_RS06470 PF01226 Formate/nitrite transporter vm_RS06480 PF06796 Periplasmic nitrate reductase protein NapE vm_RS06485 PF03264 NapC/NirT cytochrome c family, N-terminal region vm_RS06490 PF01568 Molydopterin dinucleotide binding domain vm_RS06490 PF18364 Molybdopterin oxidoreductase N-terminal domain vm_RS06490 PF00384 Molybdopterin oxidoreductase vm_RS06505 PF03193 RsgA GTPase vm_RS06515 PF02833 DHHA2 domain vm_RS06515 PF01368 DHH family vm_RS06530 PF00005 ABC transporter vm_RS06535 PF00005 ABC transporter vm_RS06535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vm_RS06540 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS06540 PF12911 N-terminal TM domain of oligopeptide transport permease C vm_RS06545 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS06550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vm_RS06555 PF02954 Bacterial regulatory protein, Fis family vm_RS06555 PF00158 Sigma-54 interaction domain vm_RS06560 PF04012 PspA/IM30 family vm_RS06575 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain vm_RS06575 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase vm_RS06580 PF03352 Methyladenine glycosylase vm_RS06580 PF00117 Glutamine amidotransferase class-I vm_RS06580 PF00958 GMP synthase C terminal domain vm_RS06580 PF13673 Acetyltransferase (GNAT) domain vm_RS06580 PF13302 Acetyltransferase (GNAT) domain vm_RS06585 PF01053 Cys/Met metabolism PLP-dependent enzyme vm_RS06590 PF13396 Phospholipase_D-nuclease N-terminal vm_RS06590 PF13091 PLD-like domain vm_RS06595 PF00209 Sodium:neurotransmitter symporter family vm_RS06600 PF00849 RNA pseudouridylate synthase vm_RS06605 PF01066 CDP-alcohol phosphatidyltransferase vm_RS06610 PF00005 ABC transporter vm_RS06615 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS06620 PF13416 Bacterial extracellular solute-binding protein vm_RS06630 PF06945 Protein of unknown function (DUF1289) vm_RS06645 PF00005 ABC transporter vm_RS06650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vm_RS06655 PF03222 Tryptophan/tyrosine permease family vm_RS06665 PF00571 CBS domain vm_RS06665 PF01769 Divalent cation transporter vm_RS06665 PF03448 MgtE intracellular N domain vm_RS06670 PF00072 Response regulator receiver domain vm_RS06670 PF00512 His Kinase A (phospho-acceptor) domain vm_RS06670 PF09456 RcsC Alpha-Beta-Loop (ABL) vm_RS06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS06675 PF03707 Bacterial signalling protein N terminal repeat vm_RS06675 PF00990 Diguanylate cyclase, GGDEF domain vm_RS06675 PF00563 EAL domain vm_RS06685 PF01752 Collagenase vm_RS06685 PF08453 Peptidase family M9 N-terminal vm_RS06685 PF04151 Bacterial pre-peptidase C-terminal domain vm_RS06695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vm_RS06695 PF12793 Sugar transport-related sRNA regulator N-term vm_RS06715 PF12729 Four helix bundle sensory module for signal transduction vm_RS06715 PF00672 HAMP domain vm_RS06715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS06725 PF00132 Bacterial transferase hexapeptide (six repeats) vm_RS06735 PF00873 AcrB/AcrD/AcrF family vm_RS06740 PF13533 Biotin-lipoyl like vm_RS06750 PF01386 Ribosomal L25p family vm_RS06755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS06760 PF00072 Response regulator receiver domain vm_RS06760 PF00486 Transcriptional regulatory protein, C terminal vm_RS06770 PF04851 Type III restriction enzyme, res subunit vm_RS06770 PF00271 Helicase conserved C-terminal domain vm_RS06775 PF01479 S4 domain vm_RS06775 PF00849 RNA pseudouridylate synthase vm_RS06790 PF11066 Protein of unknown function (DUF2867) vm_RS06790 PF13460 NAD(P)H-binding vm_RS06795 PF01554 MatE vm_RS06800 PF00005 ABC transporter vm_RS06805 PF02687 FtsX-like permease family vm_RS06805 PF12704 MacB-like periplasmic core domain vm_RS06815 PF06965 Na+/H+ antiporter 1 vm_RS06820 PF01797 Transposase IS200 like vm_RS06825 PF00202 Aminotransferase class-III vm_RS06830 PF16653 Saccharopine dehydrogenase C-terminal domain vm_RS06830 PF03435 Saccharopine dehydrogenase NADP binding domain vm_RS06840 PF05736 OprF membrane domain vm_RS06840 PF00691 OmpA family vm_RS06845 PF02321 Outer membrane efflux protein vm_RS06855 PF01609 Transposase DDE domain vm_RS06855 PF02281 Transposase Tn5 dimerisation domain vm_RS06855 PF14706 Transposase DNA-binding vm_RS06870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS06870 PF03466 LysR substrate binding domain vm_RS06880 PF01863 Protein of unknown function DUF45 vm_RS06885 PF05971 RNA methyltransferase vm_RS06900 PF04204 Homoserine O-succinyltransferase vm_RS06920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vm_RS06935 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain vm_RS06935 PF17203 Single cache domain 3 vm_RS06935 PF00989 PAS fold vm_RS06935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS06940 PF12431 Transcriptional regulator vm_RS06940 PF00072 Response regulator receiver domain vm_RS06950 PF00072 Response regulator receiver domain vm_RS06950 PF01584 CheW-like domain vm_RS06965 PF00990 Diguanylate cyclase, GGDEF domain vm_RS06965 PF00072 Response regulator receiver domain vm_RS06980 PF07690 Major Facilitator Superfamily vm_RS06985 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain vm_RS06985 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain vm_RS06990 PF00288 GHMP kinases N terminal domain vm_RS06990 PF08544 GHMP kinases C terminal vm_RS06990 PF10509 Galactokinase galactose-binding signature vm_RS06995 PF01263 Aldose 1-epimerase vm_RS07005 PF17291 N-terminal domain of M60-like peptidases vm_RS07005 PF13322 Domain of unknown function (DUF4092) vm_RS07005 PF13402 Peptidase M60, enhancin and enhancin-like vm_RS07010 PF04224 Protein of unknown function, DUF417 vm_RS07015 PF06628 Catalase-related immune-responsive vm_RS07015 PF00199 Catalase vm_RS07025 PF00080 Copper/zinc superoxide dismutase (SODC) vm_RS07030 PF04266 ASCH domain vm_RS07050 PF00206 Lyase vm_RS07050 PF10415 Fumarase C C-terminus vm_RS07060 PF01521 Iron-sulphur cluster biosynthesis vm_RS07065 PF01458 Uncharacterized protein family (UPF0051) vm_RS07070 PF00005 ABC transporter vm_RS07075 PF01458 Uncharacterized protein family (UPF0051) vm_RS07080 PF00266 Aminotransferase class-V vm_RS07085 PF02657 Fe-S metabolism associated domain vm_RS07090 PF00462 Glutaredoxin vm_RS07095 PF07972 NrdI Flavodoxin like vm_RS07100 PF08343 Ribonucleotide reductase N-terminal vm_RS07100 PF02867 Ribonucleotide reductase, barrel domain vm_RS07100 PF00317 Ribonucleotide reductase, all-alpha domain vm_RS07105 PF00268 Ribonucleotide reductase, small chain vm_RS07110 PF00005 ABC transporter vm_RS07110 PF02687 FtsX-like permease family vm_RS07110 PF12704 MacB-like periplasmic core domain vm_RS07115 PF00005 ABC transporter vm_RS07115 PF02687 FtsX-like permease family vm_RS07115 PF12704 MacB-like periplasmic core domain vm_RS07120 PF12704 MacB-like periplasmic core domain vm_RS07120 PF02687 FtsX-like permease family vm_RS07140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS07140 PF03466 LysR substrate binding domain vm_RS07145 PF00141 Peroxidase vm_RS07150 PF00232 Glycosyl hydrolase family 1 vm_RS07155 PF00356 Bacterial regulatory proteins, lacI family vm_RS07160 PF01042 Endoribonuclease L-PSP vm_RS07165 PF04074 YhcH/YjgK/YiaL vm_RS07170 PF03009 Glycerophosphoryl diester phosphodiesterase family vm_RS07175 PF00455 DeoR C terminal sensor domain vm_RS07175 PF08220 DeoR-like helix-turn-helix domain vm_RS07180 PF00005 ABC transporter vm_RS07180 PF17912 MalK OB fold domain vm_RS07185 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS07190 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS07195 PF13416 Bacterial extracellular solute-binding protein vm_RS07210 PF01618 MotA/TolQ/ExbB proton channel family vm_RS07215 PF01618 MotA/TolQ/ExbB proton channel family vm_RS07220 PF02472 Biopolymer transport protein ExbD/TolR vm_RS07235 PF01068 ATP dependent DNA ligase domain vm_RS07235 PF14743 DNA ligase OB-like domain vm_RS07245 PF01554 MatE vm_RS07255 PF03881 Fructosamine kinase vm_RS07265 PF00877 NlpC/P60 family vm_RS07270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS07270 PF00672 HAMP domain vm_RS07270 PF12729 Four helix bundle sensory module for signal transduction vm_RS07280 PF03942 DTW domain vm_RS07285 PF00480 ROK family vm_RS07295 PF00994 Probable molybdopterin binding domain vm_RS07295 PF03454 MoeA C-terminal region (domain IV) vm_RS07295 PF03453 MoeA N-terminal region (domain I and II) vm_RS07300 PF12804 MobA-like NTP transferase domain vm_RS07305 PF08402 TOBE domain vm_RS07305 PF00005 ABC transporter vm_RS07310 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS07315 PF12849 PBP superfamily domain vm_RS07320 PF02954 Bacterial regulatory protein, Fis family vm_RS07320 PF00072 Response regulator receiver domain vm_RS07320 PF00158 Sigma-54 interaction domain vm_RS07325 PF00989 PAS fold vm_RS07325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS07325 PF00512 His Kinase A (phospho-acceptor) domain vm_RS07330 PF00005 ABC transporter vm_RS07330 PF12848 ABC transporter vm_RS07335 PF00672 HAMP domain vm_RS07335 PF02743 Cache domain vm_RS07335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS07340 PF02634 FdhD/NarQ family vm_RS07360 PF02613 Nitrate reductase delta subunit vm_RS07370 PF01568 Molydopterin dinucleotide binding domain vm_RS07370 PF00384 Molybdopterin oxidoreductase vm_RS07370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain vm_RS07375 PF13247 4Fe-4S dicluster domain vm_RS07390 PF00909 Ammonium Transporter Family vm_RS07395 PF02146 Sir2 family vm_RS07400 PF04461 Protein of unknown function (DUF520) vm_RS07405 PF00793 DAHP synthetase I family vm_RS07420 PF17783 CvfB-like winged helix domain vm_RS07420 PF13509 S1 domain vm_RS07425 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF vm_RS07425 PF01189 16S rRNA methyltransferase RsmB/F vm_RS07425 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF vm_RS07430 PF02470 MlaD protein vm_RS07435 PF04403 Paraquat-inducible protein A vm_RS07440 PF00664 ABC transporter transmembrane region vm_RS07440 PF00005 ABC transporter vm_RS07445 PF13185 GAF domain vm_RS07450 PF17516 ProQ C-terminal domain vm_RS07450 PF04352 ProQ/FINO family vm_RS07455 PF03572 Peptidase family S41 vm_RS07455 PF11818 C-terminal domain of tail specific protease (DUF3340) vm_RS07455 PF17804 Tail specific protease N-terminal domain vm_RS07455 PF00595 PDZ domain vm_RS07465 PF11940 Domain of unknown function (DUF3458) Ig-like fold vm_RS07465 PF17432 Domain of unknown function (DUF3458_C) ARM repeats vm_RS07465 PF01433 Peptidase family M1 domain vm_RS07475 PF05088 Bacterial NAD-glutamate dehydrogenase vm_RS07480 PF01180 Dihydroorotate dehydrogenase vm_RS07485 PF07126 Cell-division protein ZapC vm_RS07490 PF01170 Putative RNA methylase family UPF0020 vm_RS07490 PF02926 THUMP domain vm_RS07490 PF10672 S-adenosylmethionine-dependent methyltransferase vm_RS07500 PF12848 ABC transporter vm_RS07500 PF16326 ABC transporter C-terminal domain vm_RS07500 PF00005 ABC transporter vm_RS07510 PF04957 Ribosome modulation factor vm_RS07515 PF07977 FabA-like domain vm_RS07520 PF13654 AAA domain vm_RS07520 PF05362 Lon protease (S16) C-terminal proteolytic domain vm_RS07525 PF17414 MatP C-terminal ribbon-helix-helix domain vm_RS07525 PF06303 MatP N-terminal domain vm_RS07540 PF09308 LuxQ, periplasmic vm_RS07540 PF00512 His Kinase A (phospho-acceptor) domain vm_RS07540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS07540 PF00072 Response regulator receiver domain vm_RS07555 PF00115 Cytochrome C and Quinol oxidase polypeptide I vm_RS07570 PF13442 Cytochrome C oxidase, cbb3-type, subunit III vm_RS07570 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP vm_RS07580 PF00403 Heavy-metal-associated domain vm_RS07595 PF13545 Crp-like helix-turn-helix domain vm_RS07595 PF00027 Cyclic nucleotide-binding domain vm_RS07600 PF00582 Universal stress protein family vm_RS07605 PF01171 PP-loop family vm_RS07625 PF00005 ABC transporter vm_RS07625 PF08402 TOBE domain vm_RS07630 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS07635 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS07640 PF13416 Bacterial extracellular solute-binding protein vm_RS07645 PF13416 Bacterial extracellular solute-binding protein vm_RS07650 PF00171 Aldehyde dehydrogenase family vm_RS07655 PF00072 Response regulator receiver domain vm_RS07655 PF00196 Bacterial regulatory proteins, luxR family vm_RS07665 PF00512 His Kinase A (phospho-acceptor) domain vm_RS07665 PF00989 PAS fold vm_RS07665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS07670 PF00990 Diguanylate cyclase, GGDEF domain vm_RS07670 PF17155 Gammaproteobacterial periplasmic sensor domain vm_RS07685 PF01235 Sodium:alanine symporter family vm_RS07690 PF01810 LysE type translocator vm_RS07710 PF04717 Type VI secretion system, phage-baseplate injector vm_RS07710 PF16671 Actin cross-linking domain vm_RS07715 PF05638 Type VI secretion system effector, Hcp vm_RS07720 PF02074 Carboxypeptidase Taq (M32) metallopeptidase vm_RS07725 PF08028 Acyl-CoA dehydrogenase, C-terminal domain vm_RS07735 PF00171 Aldehyde dehydrogenase family vm_RS07740 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase vm_RS07755 PF00171 Aldehyde dehydrogenase family vm_RS07760 PF01557 Fumarylacetoacetate (FAA) hydrolase family vm_RS07765 PF01557 Fumarylacetoacetate (FAA) hydrolase family vm_RS07770 PF03328 HpcH/HpaI aldolase/citrate lyase family vm_RS07775 PF01557 Fumarylacetoacetate (FAA) hydrolase family vm_RS07790 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vm_RS07795 PF01047 MarR family vm_RS07800 PF01613 Flavin reductase like domain vm_RS07810 PF00171 Aldehyde dehydrogenase family vm_RS07825 PF03401 Tripartite tricarboxylate transporter family receptor vm_RS07830 PF00582 Universal stress protein family vm_RS07835 PF01266 FAD dependent oxidoreductase vm_RS07845 PF02423 Ornithine cyclodeaminase/mu-crystallin family vm_RS07855 PF00270 DEAD/DEAH box helicase vm_RS07855 PF00271 Helicase conserved C-terminal domain vm_RS07860 PF13426 PAS domain vm_RS07860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS07860 PF08447 PAS fold vm_RS07865 PF00672 HAMP domain vm_RS07865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS07865 PF17200 Single Cache domain 2 vm_RS07870 PF00893 Small Multidrug Resistance protein vm_RS07875 PF07690 Major Facilitator Superfamily vm_RS07880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS07880 PF03466 LysR substrate binding domain vm_RS07885 PF00012 Hsp70 protein vm_RS07890 PF01979 Amidohydrolase family vm_RS07900 PF02837 Glycosyl hydrolases family 2, sugar binding domain vm_RS07900 PF00703 Glycosyl hydrolases family 2 vm_RS07900 PF02836 Glycosyl hydrolases family 2, TIM barrel domain vm_RS07900 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 vm_RS07905 PF03994 Domain of Unknown Function (DUF350) vm_RS07915 PF03738 Glutathionylspermidine synthase preATP-grasp vm_RS07925 PF00270 DEAD/DEAH box helicase vm_RS07925 PF04408 Helicase associated domain (HA2) vm_RS07925 PF00271 Helicase conserved C-terminal domain vm_RS07925 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold vm_RS07925 PF11898 Domain of unknown function (DUF3418) vm_RS07955 PF00563 EAL domain vm_RS07955 PF00990 Diguanylate cyclase, GGDEF domain vm_RS07955 PF13188 PAS domain vm_RS07955 PF03707 Bacterial signalling protein N terminal repeat vm_RS07970 PF00012 Hsp70 protein vm_RS07975 PF00990 Diguanylate cyclase, GGDEF domain vm_RS07975 PF17158 Membrane-associated sensor, integral membrane domain vm_RS07985 PF00990 Diguanylate cyclase, GGDEF domain vm_RS07985 PF00563 EAL domain vm_RS07985 PF03707 Bacterial signalling protein N terminal repeat vm_RS08005 PF06508 Queuosine biosynthesis protein QueC vm_RS08010 PF04055 Radical SAM superfamily vm_RS08020 PF14824 Sirohaem biosynthesis protein central vm_RS08020 PF10414 Sirohaem synthase dimerisation region vm_RS08020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases vm_RS08025 PF00497 Bacterial extracellular solute-binding proteins, family 3 vm_RS08030 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS08035 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS08040 PF00005 ABC transporter vm_RS08045 PF01027 Inhibitor of apoptosis-promoting Bax1 vm_RS08050 PF04358 DsrC like protein vm_RS08055 PF00708 Acylphosphatase vm_RS08060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS08060 PF00672 HAMP domain vm_RS08060 PF12729 Four helix bundle sensory module for signal transduction vm_RS08065 PF10672 S-adenosylmethionine-dependent methyltransferase vm_RS08065 PF17785 PUA-like domain vm_RS08070 PF00990 Diguanylate cyclase, GGDEF domain vm_RS08075 PF08534 Redoxin vm_RS08075 PF00462 Glutaredoxin vm_RS08080 PF00672 HAMP domain vm_RS08080 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) vm_RS08080 PF00072 Response regulator receiver domain vm_RS08080 PF01627 Hpt domain vm_RS08080 PF00512 His Kinase A (phospho-acceptor) domain vm_RS08080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS08085 PF00072 Response regulator receiver domain vm_RS08090 PF14497 Glutathione S-transferase, C-terminal domain vm_RS08090 PF02798 Glutathione S-transferase, N-terminal domain vm_RS08100 PF04209 homogentisate 1,2-dioxygenase vm_RS08105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily vm_RS08110 PF07687 Peptidase dimerisation domain vm_RS08110 PF01546 Peptidase family M20/M25/M40 vm_RS08125 PF16177 Acetyl-coenzyme A synthetase N-terminus vm_RS08125 PF00501 AMP-binding enzyme vm_RS08125 PF13193 AMP-binding enzyme C-terminal domain vm_RS08130 PF04303 PrpF protein vm_RS08135 PF00694 Aconitase C-terminal domain vm_RS08135 PF00330 Aconitase family (aconitate hydratase) vm_RS08140 PF00285 Citrate synthase, C-terminal domain vm_RS08170 PF01970 Tripartite tricarboxylate transporter TctA family vm_RS08175 PF00072 Response regulator receiver domain vm_RS08175 PF00990 Diguanylate cyclase, GGDEF domain vm_RS08180 PF02653 Branched-chain amino acid transport system / permease component vm_RS08185 PF00005 ABC transporter vm_RS08190 PF13407 Periplasmic binding protein domain vm_RS08215 PF00486 Transcriptional regulatory protein, C terminal vm_RS08215 PF00072 Response regulator receiver domain vm_RS08220 PF00512 His Kinase A (phospho-acceptor) domain vm_RS08220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS08220 PF00672 HAMP domain vm_RS08225 PF06629 MltA-interacting protein MipA vm_RS08235 PF02954 Bacterial regulatory protein, Fis family vm_RS08235 PF00072 Response regulator receiver domain vm_RS08235 PF00158 Sigma-54 interaction domain vm_RS08240 PF00497 Bacterial extracellular solute-binding proteins, family 3 vm_RS08240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS08240 PF00512 His Kinase A (phospho-acceptor) domain vm_RS08245 PF00939 Sodium:sulfate symporter transmembrane region vm_RS08250 PF00672 HAMP domain vm_RS08250 PF12729 Four helix bundle sensory module for signal transduction vm_RS08250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS08255 PF01168 Alanine racemase, N-terminal domain vm_RS08255 PF00842 Alanine racemase, C-terminal domain vm_RS08260 PF00892 EamA-like transporter family vm_RS08265 PF14706 Transposase DNA-binding vm_RS08265 PF02281 Transposase Tn5 dimerisation domain vm_RS08265 PF01609 Transposase DDE domain vm_RS08280 PF13302 Acetyltransferase (GNAT) domain vm_RS08285 PF00158 Sigma-54 interaction domain vm_RS08285 PF18024 Helix-turn-helix domain vm_RS08290 PF05128 Domain of unknown function (DUF697) vm_RS08295 PF04317 YcjX-like family, DUF463 vm_RS08310 PF04715 Anthranilate synthase component I, N terminal region vm_RS08310 PF00425 chorismate binding enzyme vm_RS08315 PF00293 NUDIX domain vm_RS08320 PF03222 Tryptophan/tyrosine permease family vm_RS08325 PF03315 Serine dehydratase beta chain vm_RS08325 PF03313 Serine dehydratase alpha chain vm_RS08330 PF01242 6-pyruvoyl tetrahydropterin synthase vm_RS08335 PF02743 Cache domain vm_RS08335 PF00672 HAMP domain vm_RS08335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS08340 PF01336 OB-fold nucleic acid binding domain vm_RS08340 PF00152 tRNA synthetases class II (D, K and N) vm_RS08345 PF08543 Phosphomethylpyrimidine kinase vm_RS08350 PF00132 Bacterial transferase hexapeptide (six repeats) vm_RS08350 PF12464 Maltose acetyltransferase vm_RS08355 PF00672 HAMP domain vm_RS08355 PF01966 HD domain vm_RS08360 PF00155 Aminotransferase class I and II vm_RS08375 PF00672 HAMP domain vm_RS08375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS08375 PF17200 Single Cache domain 2 vm_RS08380 PF04349 Periplasmic glucan biosynthesis protein, MdoG vm_RS08385 PF13506 Glycosyl transferase family 21 vm_RS08390 PF00356 Bacterial regulatory proteins, lacI family vm_RS08395 PF04794 YdjC-like protein vm_RS08400 PF11975 Family 4 glycosyl hydrolase C-terminal domain vm_RS08400 PF02056 Family 4 glycosyl hydrolase vm_RS08405 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit vm_RS08410 PF02378 Phosphotransferase system, EIIC vm_RS08415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit vm_RS08420 PF01522 Polysaccharide deacetylase vm_RS08425 PF02028 BCCT, betaine/carnitine/choline family transporter vm_RS08430 PF01047 MarR family vm_RS08435 PF00196 Bacterial regulatory proteins, luxR family vm_RS08435 PF00072 Response regulator receiver domain vm_RS08440 PF17200 Single Cache domain 2 vm_RS08440 PF07730 Histidine kinase vm_RS08445 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component vm_RS08455 PF03480 Bacterial extracellular solute-binding protein, family 7 vm_RS08470 PF00753 Metallo-beta-lactamase superfamily vm_RS08475 PF05951 Bacterial protein of unknown function (DUF882) vm_RS08505 PF02281 Transposase Tn5 dimerisation domain vm_RS08505 PF01609 Transposase DDE domain vm_RS08505 PF14706 Transposase DNA-binding vm_RS08510 PF00925 GTP cyclohydrolase II vm_RS08520 PF07690 Major Facilitator Superfamily vm_RS08530 PF17773 UPF0176 acylphosphatase like domain vm_RS08530 PF00581 Rhodanese-like domain vm_RS08535 PF00313 'Cold-shock' DNA-binding domain vm_RS08545 PF03918 Cytochrome C biogenesis protein vm_RS08550 PF08534 Redoxin vm_RS08555 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal vm_RS08555 PF01578 Cytochrome C assembly protein vm_RS08560 PF03916 Polysulphide reductase, NrfD vm_RS08565 PF13247 4Fe-4S dicluster domain vm_RS08575 PF02335 Cytochrome c552 vm_RS08585 PF00521 DNA gyrase/topoisomerase IV, subunit A vm_RS08585 PF03989 DNA gyrase C-terminal domain, beta-propeller vm_RS08595 PF03477 ATP cone domain vm_RS08595 PF02867 Ribonucleotide reductase, barrel domain vm_RS08595 PF00317 Ribonucleotide reductase, all-alpha domain vm_RS08600 PF00268 Ribonucleotide reductase, small chain vm_RS08605 PF00970 Oxidoreductase FAD-binding domain vm_RS08605 PF00175 Oxidoreductase NAD-binding domain vm_RS08605 PF00111 2Fe-2S iron-sulfur cluster binding domain vm_RS08615 PF00994 Probable molybdopterin binding domain vm_RS08630 PF00672 HAMP domain vm_RS08630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS08630 PF17200 Single Cache domain 2 vm_RS08645 PF00005 ABC transporter vm_RS08650 PF01032 FecCD transport family vm_RS08655 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family vm_RS08665 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase vm_RS08670 PF02654 Cobalamin-5-phosphate synthase vm_RS08675 PF02277 Phosphoribosyltransferase vm_RS08680 PF01641 SelR domain vm_RS08685 PF00375 Sodium:dicarboxylate symporter family vm_RS08690 PF00929 Exonuclease vm_RS08690 PF08411 Exonuclease C-terminal vm_RS08695 PF03788 LrgA family vm_RS08700 PF04172 LrgB-like family vm_RS08705 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region vm_RS08705 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region vm_RS08715 PF02222 ATP-grasp domain vm_RS08720 PF05724 Thiopurine S-methyltransferase (TPMT) vm_RS08735 PF00216 Bacterial DNA-binding protein vm_RS08740 PF01588 Putative tRNA binding domain vm_RS08740 PF03147 Ferredoxin-fold anticodon binding domain vm_RS08740 PF03484 tRNA synthetase B5 domain vm_RS08740 PF03483 B3/4 domain vm_RS08740 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain vm_RS08745 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain vm_RS08745 PF01409 tRNA synthetases class II core domain (F) vm_RS08750 PF00583 Acetyltransferase (GNAT) family vm_RS08780 PF01066 CDP-alcohol phosphatidyltransferase vm_RS08785 PF01541 GIY-YIG catalytic domain vm_RS08785 PF08459 UvrC Helix-hairpin-helix N-terminal vm_RS08785 PF02151 UvrB/uvrC motif vm_RS08790 PF00196 Bacterial regulatory proteins, luxR family vm_RS08790 PF00072 Response regulator receiver domain vm_RS08795 PF03104 DNA polymerase family B, exonuclease domain vm_RS08795 PF00136 DNA polymerase family B vm_RS08800 PF00563 EAL domain vm_RS08800 PF12792 CSS motif domain associated with EAL vm_RS08810 PF01132 Elongation factor P (EF-P) OB domain vm_RS08810 PF08207 Elongation factor P (EF-P) KOW-like domain vm_RS08810 PF09285 Elongation factor P, C-terminal vm_RS08815 PF04269 Protein of unknown function, DUF440 vm_RS08825 PF07702 UTRA domain vm_RS08825 PF00392 Bacterial regulatory proteins, gntR family vm_RS08830 PF01979 Amidohydrolase family vm_RS08835 PF00491 Arginase family vm_RS08840 PF01175 Urocanase Rossmann-like domain vm_RS08840 PF17392 Urocanase C-terminal domain vm_RS08840 PF17391 Urocanase N-terminal domain vm_RS08845 PF00221 Aromatic amino acid lyase vm_RS08860 PF04191 Phospholipid methyltransferase vm_RS08865 PF13183 4Fe-4S dicluster domain vm_RS08865 PF02913 FAD linked oxidases, C-terminal domain vm_RS08865 PF01565 FAD binding domain vm_RS08880 PF13488 Glycine zipper vm_RS08880 PF00691 OmpA family vm_RS08900 PF01259 SAICAR synthetase vm_RS08910 PF03949 Malic enzyme, NAD binding domain vm_RS08910 PF00390 Malic enzyme, N-terminal domain vm_RS08920 PF02698 DUF218 domain vm_RS08925 PF00990 Diguanylate cyclase, GGDEF domain vm_RS08925 PF08448 PAS fold vm_RS08940 PF07992 Pyridine nucleotide-disulphide oxidoreductase vm_RS08945 PF00664 ABC transporter transmembrane region vm_RS08945 PF00005 ABC transporter vm_RS08950 PF00664 ABC transporter transmembrane region vm_RS08950 PF00005 ABC transporter vm_RS08955 PF01479 S4 domain vm_RS08955 PF00849 RNA pseudouridylate synthase vm_RS08960 PF01300 Telomere recombination vm_RS08965 PF02811 PHP domain vm_RS08970 PF08056 Tryptophan operon leader peptide vm_RS08975 PF04715 Anthranilate synthase component I, N terminal region vm_RS08975 PF00425 chorismate binding enzyme vm_RS08980 PF00117 Glutamine amidotransferase class-I vm_RS08985 PF02885 Glycosyl transferase family, helical bundle domain vm_RS08985 PF00591 Glycosyl transferase family, a/b domain vm_RS08990 PF00218 Indole-3-glycerol phosphate synthase vm_RS08990 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase vm_RS08995 PF00291 Pyridoxal-phosphate dependent enzyme vm_RS09000 PF00290 Tryptophan synthase alpha chain vm_RS09005 PF00375 Sodium:dicarboxylate symporter family vm_RS09010 PF01797 Transposase IS200 like vm_RS09015 PF00265 Thymidine kinase vm_RS09020 PF02938 GAD domain vm_RS09020 PF00152 tRNA synthetases class II (D, K and N) vm_RS09020 PF01336 OB-fold nucleic acid binding domain vm_RS09025 PF01904 Protein of unknown function DUF72 vm_RS09030 PF13649 Methyltransferase domain vm_RS09035 PF08003 Protein of unknown function (DUF1698) vm_RS09040 PF18030 RimK PreATP-grasp domain vm_RS09040 PF08443 RimK-like ATP-grasp domain vm_RS09055 PF00266 Aminotransferase class-V vm_RS09065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS09065 PF00512 His Kinase A (phospho-acceptor) domain vm_RS09065 PF00989 PAS fold vm_RS09085 PF04994 TfoX C-terminal domain vm_RS09085 PF04993 TfoX N-terminal domain vm_RS09095 PF03956 Lysine exporter LysO vm_RS09105 PF00282 Pyridoxal-dependent decarboxylase conserved domain vm_RS09110 PF01380 SIS domain vm_RS09110 PF01418 Helix-turn-helix domain, rpiR family vm_RS09115 PF00465 Iron-containing alcohol dehydrogenase vm_RS09125 PF00462 Glutaredoxin vm_RS09130 PF02080 TrkA-C domain vm_RS09130 PF06826 Predicted Permease Membrane Region vm_RS09135 PF07724 AAA domain (Cdc48 subfamily) vm_RS09135 PF00004 ATPase family associated with various cellular activities (AAA) vm_RS09135 PF02861 Clp amino terminal domain, pathogenicity island component vm_RS09135 PF10431 C-terminal, D2-small domain, of ClpB protein vm_RS09135 PF17871 AAA lid domain vm_RS09140 PF02617 ATP-dependent Clp protease adaptor protein ClpS vm_RS09145 PF00313 'Cold-shock' DNA-binding domain vm_RS09150 PF01797 Transposase IS200 like vm_RS09155 PF03971 Monomeric isocitrate dehydrogenase vm_RS09160 PF00849 RNA pseudouridylate synthase vm_RS09165 PF01502 Phosphoribosyl-AMP cyclohydrolase vm_RS09165 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase vm_RS09170 PF00977 Histidine biosynthesis protein vm_RS09175 PF00977 Histidine biosynthesis protein vm_RS09180 PF00117 Glutamine amidotransferase class-I vm_RS09185 PF08645 Polynucleotide kinase 3 phosphatase vm_RS09185 PF00475 Imidazoleglycerol-phosphate dehydratase vm_RS09190 PF00155 Aminotransferase class I and II vm_RS09195 PF00815 Histidinol dehydrogenase vm_RS09200 PF01634 ATP phosphoribosyltransferase vm_RS09200 PF08029 HisG, C-terminal domain vm_RS09205 PF03553 Na+/H+ antiporter family vm_RS09210 PF00816 H-NS histone family vm_RS09215 PF00294 pfkB family carbohydrate kinase vm_RS09225 PF04356 Protein of unknown function (DUF489) vm_RS09230 PF00206 Lyase vm_RS09230 PF08328 Adenylosuccinate lyase C-terminal vm_RS09235 PF16036 Chalcone isomerase-like vm_RS09260 PF00106 short chain dehydrogenase vm_RS09270 PF01435 Peptidase family M48 vm_RS09285 PF08241 Methyltransferase domain vm_RS09290 PF00155 Aminotransferase class I and II vm_RS09295 PF06968 Biotin and Thiamin Synthesis associated domain vm_RS09295 PF04055 Radical SAM superfamily vm_RS09300 PF00202 Aminotransferase class-III vm_RS09305 PF02403 Seryl-tRNA synthetase N-terminal domain vm_RS09305 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) vm_RS09310 PF00004 ATPase family associated with various cellular activities (AAA) vm_RS09310 PF16193 AAA C-terminal domain vm_RS09310 PF12002 MgsA AAA+ ATPase C terminal vm_RS09315 PF03548 Outer membrane lipoprotein carrier protein LolA vm_RS09320 PF02810 SEC-C motif vm_RS09320 PF07517 SecA DEAD-like domain vm_RS09320 PF01043 SecA preprotein cross-linking domain vm_RS09320 PF07516 SecA Wing and Scaffold domain vm_RS09325 PF01207 Dihydrouridine synthase (Dus) vm_RS09330 PF00990 Diguanylate cyclase, GGDEF domain vm_RS09330 PF05230 MASE2 domain vm_RS09335 PF00005 ABC transporter vm_RS09340 PF02653 Branched-chain amino acid transport system / permease component vm_RS09350 PF09905 DNA-binding protein VF530 vm_RS09355 PF04217 Protein of unknown function, DUF412 vm_RS09360 PF00871 Acetokinase family vm_RS09365 PF07085 DRTGG domain vm_RS09365 PF01515 Phosphate acetyl/butaryl transferase vm_RS09370 PF13409 Glutathione S-transferase, N-terminal domain vm_RS09375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vm_RS09375 PF00005 ABC transporter vm_RS09380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vm_RS09380 PF00005 ABC transporter vm_RS09385 PF12911 N-terminal TM domain of oligopeptide transport permease C vm_RS09385 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS09390 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS09395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vm_RS09405 PF13188 PAS domain vm_RS09405 PF00072 Response regulator receiver domain vm_RS09405 PF00512 His Kinase A (phospho-acceptor) domain vm_RS09405 PF08448 PAS fold vm_RS09405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS09410 PF02954 Bacterial regulatory protein, Fis family vm_RS09410 PF00072 Response regulator receiver domain vm_RS09410 PF00158 Sigma-54 interaction domain vm_RS09415 PF00563 EAL domain vm_RS09415 PF00990 Diguanylate cyclase, GGDEF domain vm_RS09415 PF03707 Bacterial signalling protein N terminal repeat vm_RS09415 PF13188 PAS domain vm_RS09420 PF00512 His Kinase A (phospho-acceptor) domain vm_RS09420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS09425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS09425 PF00512 His Kinase A (phospho-acceptor) domain vm_RS09425 PF00989 PAS fold vm_RS09425 PF13188 PAS domain vm_RS09425 PF13426 PAS domain vm_RS09435 PF00072 Response regulator receiver domain vm_RS09450 PF01300 Telomere recombination vm_RS09450 PF03481 Putative GTP-binding controlling metal-binding vm_RS09470 PF01161 Phosphatidylethanolamine-binding protein vm_RS09480 PF06483 Chitinase C vm_RS09480 PF00704 Glycosyl hydrolases family 18 vm_RS09485 PF01116 Fructose-bisphosphate aldolase class-II vm_RS09490 PF01979 Amidohydrolase family vm_RS09495 PF03610 PTS system fructose IIA component vm_RS09500 PF03613 PTS system mannose/fructose/sorbose family IID component vm_RS09505 PF03609 PTS system sorbose-specific iic component vm_RS09510 PF03830 PTS system sorbose subfamily IIB component vm_RS09515 PF01380 SIS domain vm_RS09520 PF08013 Tagatose 6 phosphate kinase vm_RS09525 PF08220 DeoR-like helix-turn-helix domain vm_RS09525 PF00455 DeoR C terminal sensor domain vm_RS09530 PF00455 DeoR C terminal sensor domain vm_RS09530 PF08220 DeoR-like helix-turn-helix domain vm_RS09545 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain vm_RS09545 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain vm_RS09550 PF01022 Bacterial regulatory protein, arsR family vm_RS09555 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region vm_RS09560 PF00893 Small Multidrug Resistance protein vm_RS09565 PF00893 Small Multidrug Resistance protein vm_RS09570 PF01323 DSBA-like thioredoxin domain vm_RS09590 PF00005 ABC transporter vm_RS09595 PF01497 Periplasmic binding protein vm_RS09600 PF01032 FecCD transport family vm_RS09605 PF04183 IucA / IucC family vm_RS09605 PF06276 Ferric iron reductase FhuF-like transporter vm_RS09615 PF04183 IucA / IucC family vm_RS09615 PF06276 Ferric iron reductase FhuF-like transporter vm_RS09620 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) vm_RS09625 PF00593 TonB dependent receptor vm_RS09625 PF07715 TonB-dependent Receptor Plug Domain vm_RS09635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS09635 PF00672 HAMP domain vm_RS09660 PF13289 SIR2-like domain vm_RS09665 PF00817 impB/mucB/samB family vm_RS09665 PF11799 impB/mucB/samB family C-terminal domain vm_RS09665 PF13438 Domain of unknown function (DUF4113) vm_RS09665 PF11798 IMS family HHH motif vm_RS09670 PF00717 Peptidase S24-like vm_RS09750 PF01381 Helix-turn-helix vm_RS09775 PF03707 Bacterial signalling protein N terminal repeat vm_RS09775 PF00563 EAL domain vm_RS09775 PF00990 Diguanylate cyclase, GGDEF domain vm_RS09785 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain vm_RS09800 PF13404 AsnC-type helix-turn-helix domain vm_RS09800 PF01037 Lrp/AsnC ligand binding domain vm_RS09805 PF00291 Pyridoxal-phosphate dependent enzyme vm_RS09810 PF01343 Peptidase family S49 vm_RS09810 PF08496 Peptidase family S49 N-terminal vm_RS09815 PF00106 short chain dehydrogenase vm_RS09820 PF03692 Putative zinc- or iron-chelating domain vm_RS09825 PF03692 Putative zinc- or iron-chelating domain vm_RS09830 PF02132 RecR protein vm_RS09830 PF13662 Toprim domain vm_RS09835 PF02575 YbaB/EbfC DNA-binding family vm_RS09840 PF12170 DNA polymerase III tau subunit V interacting with alpha vm_RS09840 PF12169 DNA polymerase III subunits gamma and tau domain III vm_RS09840 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding vm_RS09845 PF00156 Phosphoribosyl transferase domain vm_RS09850 PF04304 Protein of unknown function (DUF454) vm_RS09860 PF00072 Response regulator receiver domain vm_RS09865 PF03466 LysR substrate binding domain vm_RS09865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS09870 PF00881 Nitroreductase family vm_RS09875 PF00378 Enoyl-CoA hydratase/isomerase vm_RS09875 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain vm_RS09875 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain vm_RS09880 PF02803 Thiolase, C-terminal domain vm_RS09880 PF00108 Thiolase, N-terminal domain vm_RS09895 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) vm_RS09900 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) vm_RS09905 PF01451 Low molecular weight phosphotyrosine protein phosphatase vm_RS09910 PF12557 Cob(I)alamin adenosyltransferase N terminal vm_RS09910 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP vm_RS09915 PF05170 AsmA family vm_RS09920 PF00485 Phosphoribulokinase / Uridine kinase family vm_RS09925 PF10609 NUBPL iron-transfer P-loop NTPase vm_RS09930 PF09334 tRNA synthetases class I (M) vm_RS09930 PF01588 Putative tRNA binding domain vm_RS09940 PF01048 Phosphorylase superfamily vm_RS09945 PF00403 Heavy-metal-associated domain vm_RS09950 PF00571 CBS domain vm_RS09950 PF01743 Poly A polymerase head domain vm_RS09955 PF00990 Diguanylate cyclase, GGDEF domain vm_RS09960 PF02391 MoaE protein vm_RS09965 PF02597 ThiS family vm_RS09970 PF01967 MoaC family vm_RS09975 PF00994 Probable molybdopterin binding domain vm_RS09980 PF04055 Radical SAM superfamily vm_RS09980 PF06463 Molybdenum Cofactor Synthesis C vm_RS09985 PF01933 Uncharacterised protein family UPF0052 vm_RS09990 PF01627 Hpt domain vm_RS09995 PF00158 Sigma-54 interaction domain vm_RS09995 PF02954 Bacterial regulatory protein, Fis family vm_RS09995 PF00072 Response regulator receiver domain vm_RS10000 PF04851 Type III restriction enzyme, res subunit vm_RS10000 PF00271 Helicase conserved C-terminal domain vm_RS10000 PF17757 UvrB interaction domain vm_RS10000 PF12344 Ultra-violet resistance protein B vm_RS10000 PF02151 UvrB/uvrC motif vm_RS10010 PF03466 LysR substrate binding domain vm_RS10010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS10015 PF00884 Sulfatase vm_RS10020 PF04055 Radical SAM superfamily vm_RS10020 PF13186 Iron-sulfur cluster-binding domain vm_RS10025 PF17863 AAA lid domain vm_RS10025 PF07726 ATPase family associated with various cellular activities (AAA) vm_RS10040 PF00092 von Willebrand factor type A domain vm_RS10060 PF02508 Rnf-Nqr subunit, membrane protein vm_RS10065 PF04060 Putative Fe-S cluster vm_RS10070 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit vm_RS10070 PF12838 4Fe-4S dicluster domain vm_RS10070 PF13375 RnfC Barrel sandwich hybrid domain vm_RS10070 PF10531 SLBB domain vm_RS10075 PF03116 NQR2, RnfD, RnfE family vm_RS10080 PF04205 FMN-binding domain vm_RS10085 PF02508 Rnf-Nqr subunit, membrane protein vm_RS10090 PF10576 Iron-sulfur binding domain of endonuclease III vm_RS10090 PF00730 HhH-GPD superfamily base excision DNA repair protein vm_RS10090 PF00633 Helix-hairpin-helix motif vm_RS10095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily vm_RS10100 PF14706 Transposase DNA-binding vm_RS10100 PF02281 Transposase Tn5 dimerisation domain vm_RS10100 PF01609 Transposase DDE domain vm_RS10105 PF10952 Protein of unknown function (DUF2753) vm_RS10110 PF00691 OmpA family vm_RS10110 PF18393 MotY N-terminal domain vm_RS10115 PF00929 Exonuclease vm_RS10120 PF03553 Na+/H+ antiporter family vm_RS10120 PF13726 Na+-H+ antiporter family vm_RS10125 PF00156 Phosphoribosyl transferase domain vm_RS10130 PF02674 Colicin V production protein vm_RS10135 PF05036 Sporulation related domain vm_RS10140 PF08245 Mur ligase middle domain vm_RS10140 PF02875 Mur ligase family, glutamate ligase domain vm_RS10145 PF01039 Carboxyl transferase domain vm_RS10145 PF17848 Acetyl-coA carboxylase zinc finger domain vm_RS10150 PF01416 tRNA pseudouridine synthase vm_RS10160 PF00749 tRNA synthetases class I (E and Q), catalytic domain vm_RS10160 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain vm_RS10165 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 vm_RS10165 PF02378 Phosphotransferase system, EIIC vm_RS10165 PF00367 phosphotransferase system, EIIB vm_RS10170 PF01979 Amidohydrolase family vm_RS10175 PF00480 ROK family vm_RS10175 PF01047 MarR family vm_RS10180 PF00999 Sodium/hydrogen exchanger family vm_RS10180 PF02254 TrkA-N domain vm_RS10185 PF00733 Asparagine synthase vm_RS10185 PF13537 Glutamine amidotransferase domain vm_RS10190 PF02357 Transcription termination factor nusG vm_RS10195 PF00854 POT family vm_RS10200 PF00762 Ferrochelatase vm_RS10205 PF05191 Adenylate kinase, active site lid vm_RS10210 PF00183 Hsp90 protein vm_RS10210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS10215 PF00486 Transcriptional regulatory protein, C terminal vm_RS10220 PF17323 Trans-membrane regulatory protein ToxS vm_RS10230 PF12850 Calcineurin-like phosphoesterase superfamily domain vm_RS10235 PF08338 Domain of unknown function (DUF1731) vm_RS10235 PF01370 NAD dependent epimerase/dehydratase family vm_RS10240 PF00106 short chain dehydrogenase vm_RS10245 PF00085 Thioredoxin vm_RS10250 PF16200 C-terminal region of band_7 vm_RS10250 PF01145 SPFH domain / Band 7 family vm_RS10255 PF01957 NfeD-like C-terminal, partner-binding vm_RS10260 PF13411 MerR HTH family regulatory protein vm_RS10270 PF13609 Gram-negative porin vm_RS10275 PF12826 Helix-hairpin-helix motif vm_RS10275 PF03119 NAD-dependent DNA ligase C4 zinc finger domain vm_RS10275 PF03120 NAD-dependent DNA ligase OB-fold domain vm_RS10275 PF00533 BRCA1 C Terminus (BRCT) domain vm_RS10275 PF01653 NAD-dependent DNA ligase adenylation domain vm_RS10280 PF04354 ZipA, C-terminal FtsZ-binding domain vm_RS10290 PF00291 Pyridoxal-phosphate dependent enzyme vm_RS10300 PF00381 PTS HPr component phosphorylation site vm_RS10305 PF02896 PEP-utilising enzyme, TIM barrel domain vm_RS10305 PF00391 PEP-utilising enzyme, mobile domain vm_RS10305 PF05524 PEP-utilising enzyme, N-terminal vm_RS10310 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 vm_RS10315 PF01494 FAD binding domain vm_RS10320 PF00919 Uncharacterized protein family UPF0004 vm_RS10320 PF01938 TRAM domain vm_RS10320 PF04055 Radical SAM superfamily vm_RS10325 PF02562 PhoH-like protein vm_RS10330 PF02130 Uncharacterized protein family UPF0054 vm_RS10335 PF00571 CBS domain vm_RS10335 PF03471 Transporter associated domain vm_RS10340 PF00795 Carbon-nitrogen hydrolase vm_RS10345 PF07295 Zinc-ribbon containing domain vm_RS10350 PF13603 Leucyl-tRNA synthetase, Domain 2 vm_RS10350 PF08264 Anticodon-binding domain of tRNA vm_RS10350 PF00133 tRNA synthetases class I (I, L, M and V) vm_RS10355 PF04390 Lipopolysaccharide-assembly vm_RS10360 PF14840 Processivity clamp loader gamma complex DNA pol III C-term vm_RS10360 PF06144 DNA polymerase III, delta subunit vm_RS10370 PF02590 Predicted SPOUT methyltransferase vm_RS10375 PF03717 Penicillin-binding Protein dimerisation domain vm_RS10375 PF00905 Penicillin binding protein transpeptidase domain vm_RS10380 PF01098 Cell cycle protein vm_RS10385 PF05036 Sporulation related domain vm_RS10385 PF03330 Lytic transglycolase vm_RS10390 PF07943 Penicillin-binding protein 5, C-terminal domain vm_RS10390 PF00768 D-alanyl-D-alanine carboxypeptidase vm_RS10395 PF04359 Protein of unknown function (DUF493) vm_RS10400 PF03099 Biotin/lipoate A/B protein ligase family vm_RS10405 PF04055 Radical SAM superfamily vm_RS10405 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family vm_RS10415 PF00464 Serine hydroxymethyltransferase vm_RS10435 PF02706 Chain length determinant protein vm_RS10435 PF13807 G-rich domain on putative tyrosine kinase vm_RS10435 PF13614 AAA domain vm_RS10440 PF18412 Outer-membrane lipoprotein Wza C-terminal domain vm_RS10440 PF10531 SLBB domain vm_RS10440 PF02563 Polysaccharide biosynthesis/export protein vm_RS10450 PF02397 Bacterial sugar transferase vm_RS10465 PF17945 Beta/Gamma crystallin vm_RS10465 PF12561 ToxR activated gene A lipoprotein domain vm_RS10480 PF03808 Glycosyl transferase WecB/TagA/CpsF family vm_RS10490 PF13439 Glycosyltransferase Family 4 vm_RS10490 PF00534 Glycosyl transferases group 1 vm_RS10500 PF00132 Bacterial transferase hexapeptide (six repeats) vm_RS10500 PF06426 Serine acetyltransferase, N-terminal vm_RS10525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain vm_RS10525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain vm_RS10525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain vm_RS10530 PF02350 UDP-N-acetylglucosamine 2-epimerase vm_RS10540 PF00873 AcrB/AcrD/AcrF family vm_RS10545 PF13533 Biotin-lipoyl like vm_RS10580 PF00672 HAMP domain vm_RS10580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS10580 PF00512 His Kinase A (phospho-acceptor) domain vm_RS10585 PF00486 Transcriptional regulatory protein, C terminal vm_RS10585 PF00072 Response regulator receiver domain vm_RS10590 PF16657 Maltogenic Amylase, C-terminal domain vm_RS10590 PF00128 Alpha amylase, catalytic domain vm_RS10595 PF00367 phosphotransferase system, EIIB vm_RS10595 PF02378 Phosphotransferase system, EIIC vm_RS10600 PF00356 Bacterial regulatory proteins, lacI family vm_RS10610 PF09383 NIL domain vm_RS10610 PF00005 ABC transporter vm_RS10615 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS10620 PF03180 NLPA lipoprotein vm_RS10625 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) vm_RS10630 PF07348 Syd protein (SUKH-2) vm_RS10635 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term vm_RS10635 PF14489 QueF-like protein vm_RS10645 PF00990 Diguanylate cyclase, GGDEF domain vm_RS10650 PF03641 Possible lysine decarboxylase vm_RS10650 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases vm_RS10650 PF11892 Domain of unknown function (DUF3412) vm_RS10655 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain vm_RS10655 PF01367 5'-3' exonuclease, C-terminal SAM fold vm_RS10660 PF04241 Protein of unknown function (DUF423) vm_RS10665 PF03466 LysR substrate binding domain vm_RS10665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS10675 PF02926 THUMP domain vm_RS10675 PF02568 Thiamine biosynthesis protein (ThiI) vm_RS10680 PF13677 Membrane MotB of proton-channel complex MotA/MotB vm_RS10680 PF00691 OmpA family vm_RS10685 PF01618 MotA/TolQ/ExbB proton channel family vm_RS10690 PF02609 Exonuclease VII small subunit vm_RS10695 PF00348 Polyprenyl synthetase vm_RS10700 PF02780 Transketolase, C-terminal domain vm_RS10700 PF02779 Transketolase, pyrimidine binding domain vm_RS10700 PF13292 1-deoxy-D-xylulose-5-phosphate synthase vm_RS10705 PF00849 RNA pseudouridylate synthase vm_RS10735 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 vm_RS10740 PF03806 AbgT putative transporter family vm_RS10745 PF00444 Ribosomal protein L36 vm_RS10750 PF01197 Ribosomal protein L31 vm_RS10755 PF01980 tRNA-methyltransferase O vm_RS10755 PF18389 TrmO C-terminal domain vm_RS10760 PF04073 Aminoacyl-tRNA editing domain vm_RS10760 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) vm_RS10760 PF03129 Anticodon binding domain vm_RS10770 PF06786 Uncharacterised protein family (UPF0253) vm_RS10780 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain vm_RS10780 PF02769 AIR synthase related protein, C-terminal domain vm_RS10780 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal vm_RS10790 PF00497 Bacterial extracellular solute-binding proteins, family 3 vm_RS10790 PF01464 Transglycosylase SLT domain vm_RS10800 PF14437 MafB19-like deaminase vm_RS10805 PF03806 AbgT putative transporter family vm_RS10835 PF07963 Prokaryotic N-terminal methylation motif vm_RS10835 PF00114 Pilin (bacterial filament) vm_RS10840 PF00684 DnaJ central domain vm_RS10840 PF00226 DnaJ domain vm_RS10840 PF01556 DnaJ C terminal domain vm_RS10845 PF00012 Hsp70 protein vm_RS10850 PF01025 GrpE vm_RS10855 PF01513 ATP-NAD kinase vm_RS10860 PF02463 RecF/RecN/SMC N terminal domain vm_RS10865 PF04355 SmpA / OmlA family vm_RS10870 PF03658 RnfH family Ubiquitin vm_RS10875 PF03364 Polyketide cyclase / dehydrase and lipid transport vm_RS10880 PF01668 SmpB protein vm_RS10890 PF13356 Arm DNA-binding domain vm_RS10890 PF00589 Phage integrase family vm_RS10900 PF13693 Winged helix-turn-helix DNA-binding vm_RS10905 PF02316 Mu DNA-binding domain vm_RS10905 PF09039 Mu DNA binding, I gamma subdomain vm_RS10905 PF02914 Bacteriophage Mu transposase vm_RS10905 PF09299 Mu transposase, C-terminal vm_RS10910 PF09077 Mu B transposition protein, C terminal vm_RS10910 PF13401 AAA domain vm_RS11030 PF08461 Ribonuclease R winged-helix domain vm_RS11035 PF11985 Protein of unknown function (DUF3486) vm_RS11040 PF03237 Terminase-like family vm_RS11045 PF06074 Protein of unknown function (DUF935) vm_RS11075 PF10124 Mu-like prophage major head subunit gpT vm_RS11085 PF07030 Protein of unknown function (DUF1320) vm_RS11115 PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 vm_RS11135 PF06890 Bacteriophage Mu Gp45 protein vm_RS11145 PF04865 Baseplate J-like protein vm_RS11150 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) vm_RS11165 PF13356 Arm DNA-binding domain vm_RS11165 PF00589 Phage integrase family vm_RS11175 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) vm_RS11175 PF11867 Domain of unknown function (DUF3387) vm_RS11175 PF18766 SWI2/SNF2 ATPase vm_RS11180 PF01420 Type I restriction modification DNA specificity domain vm_RS11185 PF02384 N-6 DNA Methylase vm_RS11205 PF11953 Domain of unknown function (DUF3470) vm_RS11205 PF00037 4Fe-4S binding domain vm_RS11210 PF08032 RNA 2'-O ribose methyltransferase substrate binding vm_RS11210 PF00588 SpoU rRNA Methylase family vm_RS11220 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase vm_RS11225 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase vm_RS11230 PF04223 Citrate lyase, alpha subunit (CitF) vm_RS11235 PF03328 HpcH/HpaI aldolase/citrate lyase family vm_RS11240 PF06857 Malonate decarboxylase delta subunit (MdcD) vm_RS11245 PF08218 Citrate lyase ligase C-terminal domain vm_RS11250 PF03390 2-hydroxycarboxylate transporter family vm_RS11255 PF04277 Oxaloacetate decarboxylase, gamma chain vm_RS11260 PF00682 HMGL-like vm_RS11260 PF00364 Biotin-requiring enzyme vm_RS11260 PF02436 Conserved carboxylase domain vm_RS11265 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit vm_RS11270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS11270 PF17203 Single cache domain 3 vm_RS11275 PF00072 Response regulator receiver domain vm_RS11275 PF12431 Transcriptional regulator vm_RS11285 PF12792 CSS motif domain associated with EAL vm_RS11285 PF00563 EAL domain vm_RS11300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS11300 PF03466 LysR substrate binding domain vm_RS11305 PF01266 FAD dependent oxidoreductase vm_RS11310 PF01235 Sodium:alanine symporter family vm_RS11315 PF14864 Alkyl sulfatase C-terminal vm_RS11315 PF14863 Alkyl sulfatase dimerisation vm_RS11315 PF00753 Metallo-beta-lactamase superfamily vm_RS11320 PF03466 LysR substrate binding domain vm_RS11320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS11325 PF01184 GPR1/FUN34/yaaH family vm_RS11330 PF06483 Chitinase C vm_RS11330 PF00704 Glycosyl hydrolases family 18 vm_RS11335 PF00958 GMP synthase C terminal domain vm_RS11335 PF02540 NAD synthase vm_RS11335 PF00117 Glutamine amidotransferase class-I vm_RS11340 PF00571 CBS domain vm_RS11340 PF00478 IMP dehydrogenase / GMP reductase domain vm_RS11345 PF02601 Exonuclease VII, large subunit vm_RS11345 PF13742 OB-fold nucleic acid binding domain vm_RS11360 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal vm_RS11360 PF01926 50S ribosome-binding GTPase vm_RS11365 PF13360 PQQ-like domain vm_RS11370 PF09976 Tetratricopeptide repeat-like domain vm_RS11375 PF03129 Anticodon binding domain vm_RS11375 PF13393 Histidyl-tRNA synthetase vm_RS11380 PF04551 GcpE protein vm_RS11385 PF13464 Domain of unknown function (DUF4115) vm_RS11390 PF04055 Radical SAM superfamily vm_RS11395 PF00334 Nucleoside diphosphate kinase vm_RS11400 PF00883 Cytosol aminopeptidase family, catalytic domain vm_RS11400 PF12404 Peptidase vm_RS11405 PF04384 Iron-sulphur cluster assembly vm_RS11410 PF00111 2Fe-2S iron-sulfur cluster binding domain vm_RS11415 PF00012 Hsp70 protein vm_RS11420 PF07743 HSCB C-terminal oligomerisation domain vm_RS11420 PF00226 DnaJ domain vm_RS11425 PF01521 Iron-sulphur cluster biosynthesis vm_RS11430 PF01592 NifU-like N terminal domain vm_RS11435 PF00266 Aminotransferase class-V vm_RS11440 PF02082 Transcriptional regulator vm_RS11445 PF00588 SpoU rRNA Methylase family vm_RS11450 PF00459 Inositol monophosphatase family vm_RS11455 PF07549 SecD/SecF GG Motif vm_RS11455 PF02355 Protein export membrane protein vm_RS11460 PF02355 Protein export membrane protein vm_RS11460 PF07549 SecD/SecF GG Motif vm_RS11460 PF13721 SecD export protein N-terminal TM region vm_RS11465 PF02699 Preprotein translocase subunit vm_RS11470 PF01702 Queuine tRNA-ribosyltransferase vm_RS11480 PF02547 Queuosine biosynthesis protein vm_RS11485 PF00571 CBS domain vm_RS11490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS11495 PF00463 Isocitrate lyase family vm_RS11500 PF01274 Malate synthase vm_RS11505 PF03466 LysR substrate binding domain vm_RS11505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS11510 PF00578 AhpC/TSA family vm_RS11510 PF10417 C-terminal domain of 1-Cys peroxiredoxin vm_RS11515 PF03932 CutC family vm_RS11520 PF03976 Polyphosphate kinase 2 (PPK2) vm_RS11525 PF01895 PhoU domain vm_RS11530 PF00005 ABC transporter vm_RS11535 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS11540 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS11545 PF17941 Polyphosphate kinase C-terminal domain 1 vm_RS11545 PF13089 Polyphosphate kinase N-terminal domain vm_RS11545 PF13090 Polyphosphate kinase C-terminal domain 2 vm_RS11545 PF02503 Polyphosphate kinase middle domain vm_RS11550 PF02541 Ppx/GppA phosphatase family vm_RS11555 PF12849 PBP superfamily domain vm_RS11560 PF00512 His Kinase A (phospho-acceptor) domain vm_RS11560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS11560 PF00989 PAS fold vm_RS11560 PF11808 Phosphate regulon sensor protein PhoR vm_RS11565 PF00072 Response regulator receiver domain vm_RS11565 PF00486 Transcriptional regulatory protein, C terminal vm_RS11570 PF04381 Putative exonuclease, RdgC vm_RS11575 PF01136 Peptidase family U32 vm_RS11575 PF16325 Peptidase family U32 C-terminal domain vm_RS11580 PF00037 4Fe-4S binding domain vm_RS11590 PF00881 Nitroreductase family vm_RS11600 PF01738 Dienelactone hydrolase family vm_RS11635 PF10431 C-terminal, D2-small domain, of ClpB protein vm_RS11635 PF02861 Clp amino terminal domain, pathogenicity island component vm_RS11635 PF17871 AAA lid domain vm_RS11635 PF07724 AAA domain (Cdc48 subfamily) vm_RS11635 PF00004 ATPase family associated with various cellular activities (AAA) vm_RS11640 PF02578 Multi-copper polyphenol oxidoreductase laccase vm_RS11645 PF00849 RNA pseudouridylate synthase vm_RS11645 PF01479 S4 domain vm_RS11650 PF13525 Outer membrane lipoprotein vm_RS11655 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein vm_RS11660 PF01817 Chorismate mutase type II vm_RS11660 PF00800 Prephenate dehydratase vm_RS11665 PF13416 Bacterial extracellular solute-binding protein vm_RS11670 PF00990 Diguanylate cyclase, GGDEF domain vm_RS11670 PF00563 EAL domain vm_RS11675 PF01931 Protein of unknown function DUF84 vm_RS11680 PF01371 Trp repressor protein vm_RS11685 PF01464 Transglycosylase SLT domain vm_RS11685 PF14718 Soluble lytic murein transglycosylase L domain vm_RS11690 PF00005 ABC transporter vm_RS11690 PF12848 ABC transporter vm_RS11695 PF07238 PilZ domain vm_RS11700 PF01817 Chorismate mutase type II vm_RS11700 PF02153 Prephenate dehydrogenase vm_RS11705 PF00793 DAHP synthetase I family vm_RS11710 PF06580 Histidine kinase vm_RS11710 PF07694 5TMR of 5TMR-LYT vm_RS11715 PF00072 Response regulator receiver domain vm_RS11715 PF04397 LytTr DNA-binding domain vm_RS11720 PF00933 Glycosyl hydrolase family 3 N terminal domain vm_RS11725 PF03702 Anhydro-N-acetylmuramic acid kinase vm_RS11730 PF13580 SIS domain vm_RS11745 PF02554 Carbon starvation protein CstA vm_RS11750 PF02401 LytB protein vm_RS11755 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase vm_RS11760 PF01252 Signal peptidase (SPase) II vm_RS11765 PF06827 Zinc finger found in FPG and IleRS vm_RS11765 PF00133 tRNA synthetases class I (I, L, M and V) vm_RS11765 PF08264 Anticodon-binding domain of tRNA vm_RS11770 PF01687 Riboflavin kinase vm_RS11770 PF06574 FAD synthetase vm_RS11775 PF03023 Lipid II flippase MurJ vm_RS11780 PF01649 Ribosomal protein S20 vm_RS11785 PF01022 Bacterial regulatory protein, arsR family vm_RS11790 PF01609 Transposase DDE domain vm_RS11790 PF02281 Transposase Tn5 dimerisation domain vm_RS11790 PF14706 Transposase DNA-binding vm_RS11795 PF03466 LysR substrate binding domain vm_RS11795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS11800 PF02690 Na+/Pi-cotransporter vm_RS11805 PF00303 Thymidylate synthase vm_RS11810 PF01790 Prolipoprotein diacylglyceryl transferase vm_RS11815 PF01925 Sulfite exporter TauE/SafE vm_RS11820 PF02896 PEP-utilising enzyme, TIM barrel domain vm_RS11820 PF05524 PEP-utilising enzyme, N-terminal vm_RS11820 PF01590 GAF domain vm_RS11820 PF00391 PEP-utilising enzyme, mobile domain vm_RS11825 PF00293 NUDIX domain vm_RS11830 PF02976 DNA mismatch repair enzyme MutH vm_RS11835 PF00248 Aldo/keto reductase family vm_RS11850 PF00072 Response regulator receiver domain vm_RS11850 PF02954 Bacterial regulatory protein, Fis family vm_RS11850 PF00158 Sigma-54 interaction domain vm_RS11855 PF00152 tRNA synthetases class II (D, K and N) vm_RS11855 PF01336 OB-fold nucleic acid binding domain vm_RS11860 PF03462 PCRF domain vm_RS11860 PF00472 RF-1 domain vm_RS11865 PF05525 Branched-chain amino acid transport protein vm_RS11875 PF00271 Helicase conserved C-terminal domain vm_RS11875 PF00270 DEAD/DEAH box helicase vm_RS11880 PF03144 Elongation factor Tu domain 2 vm_RS11880 PF16658 Class II release factor RF3, C-terminal domain vm_RS11880 PF00009 Elongation factor Tu GTP binding domain vm_RS11885 PF03707 Bacterial signalling protein N terminal repeat vm_RS11885 PF00990 Diguanylate cyclase, GGDEF domain vm_RS11885 PF00563 EAL domain vm_RS11900 PF13508 Acetyltransferase (GNAT) domain vm_RS11905 PF02036 SCP-2 sterol transfer family vm_RS11910 PF00563 EAL domain vm_RS11910 PF03707 Bacterial signalling protein N terminal repeat vm_RS11910 PF00990 Diguanylate cyclase, GGDEF domain vm_RS11915 PF01136 Peptidase family U32 vm_RS11920 PF01136 Peptidase family U32 vm_RS11930 PF01047 MarR family vm_RS11935 PF01609 Transposase DDE domain vm_RS11935 PF02281 Transposase Tn5 dimerisation domain vm_RS11935 PF14706 Transposase DNA-binding vm_RS11940 PF13181 Tetratricopeptide repeat vm_RS11940 PF07719 Tetratricopeptide repeat vm_RS11945 PF00013 KH domain vm_RS11945 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain vm_RS11945 PF01138 3' exoribonuclease family, domain 1 vm_RS11945 PF03725 3' exoribonuclease family, domain 2 vm_RS11945 PF00575 S1 RNA binding domain vm_RS11950 PF00312 Ribosomal protein S15 vm_RS11955 PF01509 TruB family pseudouridylate synthase (N terminal domain) vm_RS11955 PF16198 tRNA pseudouridylate synthase B C-terminal domain vm_RS11955 PF09157 Pseudouridine synthase II TruB, C-terminal vm_RS11960 PF02033 Ribosome-binding factor A vm_RS11965 PF04760 Translation initiation factor IF-2, N-terminal region vm_RS11965 PF00009 Elongation factor Tu GTP binding domain vm_RS11965 PF11987 Translation-initiation factor 2 vm_RS11965 PF08364 Bacterial translation initiation factor IF-2 associated region vm_RS11970 PF00575 S1 RNA binding domain vm_RS11970 PF08529 NusA N-terminal domain vm_RS11970 PF13184 NusA-like KH domain vm_RS11975 PF17384 RimP C-terminal SH3 domain vm_RS11975 PF02576 RimP N-terminal domain vm_RS11990 PF03840 Preprotein translocase SecG subunit vm_RS12000 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III vm_RS12000 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II vm_RS12000 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I vm_RS12000 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain vm_RS12005 PF00809 Pterin binding enzyme vm_RS12010 PF00004 ATPase family associated with various cellular activities (AAA) vm_RS12010 PF06480 FtsH Extracellular vm_RS12010 PF17862 AAA+ lid domain vm_RS12010 PF01434 Peptidase family M41 vm_RS12015 PF01728 FtsJ-like methyltransferase vm_RS12020 PF01985 CRS1 / YhbY (CRM) domain vm_RS12025 PF01272 Transcription elongation factor, GreA/GreB, C-term vm_RS12025 PF03449 Transcription elongation factor, N-terminal vm_RS12030 PF13609 Gram-negative porin vm_RS12035 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family vm_RS12040 PF01479 S4 domain vm_RS12040 PF00579 tRNA synthetases class I (W and Y) vm_RS12045 PF01551 Peptidase family M23 vm_RS12045 PF04225 Opacity-associated protein A LysM-like domain vm_RS12050 PF00873 AcrB/AcrD/AcrF family vm_RS12060 PF01521 Iron-sulphur cluster biosynthesis vm_RS12070 PF00202 Aminotransferase class-III vm_RS12080 PF01594 AI-2E family transporter vm_RS12085 PF08468 Methyltransferase small domain N-terminal vm_RS12085 PF05175 Methyltransferase small domain vm_RS12090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS12090 PF01627 Hpt domain vm_RS12090 PF00512 His Kinase A (phospho-acceptor) domain vm_RS12090 PF17149 Periplasmic sensor domain found in signal transduction proteins vm_RS12090 PF00072 Response regulator receiver domain vm_RS12090 PF00672 HAMP domain vm_RS12095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vm_RS12100 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS12105 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS12105 PF12911 N-terminal TM domain of oligopeptide transport permease C vm_RS12110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vm_RS12110 PF00005 ABC transporter vm_RS12115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vm_RS12115 PF00005 ABC transporter vm_RS12125 PF01869 BadF/BadG/BcrA/BcrD ATPase family vm_RS12130 PF00728 Glycosyl hydrolase family 20, catalytic domain vm_RS12130 PF02838 Glycosyl hydrolase family 20, domain 2 vm_RS12135 PF06165 Glycosyltransferase family 36 vm_RS12135 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain vm_RS12140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain vm_RS12140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III vm_RS12140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II vm_RS12140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I vm_RS12145 PF08402 TOBE domain vm_RS12145 PF00005 ABC transporter vm_RS12150 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS12155 PF13416 Bacterial extracellular solute-binding protein vm_RS12160 PF00909 Ammonium Transporter Family vm_RS12165 PF00543 Nitrogen regulatory protein P-II vm_RS12170 PF06062 Uncharacterised protein family (UPF0231) vm_RS12175 PF06434 Aconitate hydratase 2 N-terminus vm_RS12175 PF00330 Aconitase family (aconitate hydratase) vm_RS12175 PF11791 Aconitate B N-terminal domain vm_RS12180 PF01734 Patatin-like phospholipase vm_RS12185 PF00912 Transglycosylase vm_RS12185 PF00905 Penicillin binding protein transpeptidase domain vm_RS12185 PF14814 Bifunctional transglycosylase second domain vm_RS12190 PF04408 Helicase associated domain (HA2) vm_RS12190 PF00270 DEAD/DEAH box helicase vm_RS12190 PF00271 Helicase conserved C-terminal domain vm_RS12190 PF08482 ATP-dependent helicase C-terminal vm_RS12195 PF17746 SfsA N-terminal OB domain vm_RS12195 PF03749 Sugar fermentation stimulation protein RE domain vm_RS12200 PF01258 Prokaryotic dksA/traR C4-type zinc finger vm_RS12205 PF00749 tRNA synthetases class I (E and Q), catalytic domain vm_RS12210 PF12626 Polymerase A arginine-rich C-terminus vm_RS12210 PF01743 Poly A polymerase head domain vm_RS12210 PF12627 Probable RNA and SrmB- binding site of polymerase A vm_RS12215 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) vm_RS12220 PF02548 Ketopantoate hydroxymethyltransferase vm_RS12225 PF02569 Pantoate-beta-alanine ligase vm_RS12230 PF01061 ABC-2 type transporter vm_RS12235 PF00005 ABC transporter vm_RS12240 PF00916 Sulfate permease family vm_RS12240 PF01740 STAS domain vm_RS12245 PF00484 Carbonic anhydrase vm_RS12250 PF00156 Phosphoribosyl transferase domain vm_RS12255 PF00440 Bacterial regulatory proteins, tetR family vm_RS12260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases vm_RS12265 PF04348 LppC putative lipoprotein vm_RS12270 PF02021 Uncharacterised protein family UPF0102 vm_RS12275 PF13580 SIS domain vm_RS12280 PF04972 BON domain vm_RS12285 PF04386 Stringent starvation protein B vm_RS12290 PF02798 Glutathione S-transferase, N-terminal domain vm_RS12290 PF00043 Glutathione S-transferase, C-terminal domain vm_RS12295 PF02167 Cytochrome C1 family vm_RS12300 PF00032 Cytochrome b(C-terminal)/b6/petD vm_RS12300 PF00033 Cytochrome b/b6/petB vm_RS12305 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal vm_RS12305 PF00355 Rieske [2Fe-2S] domain vm_RS12310 PF00380 Ribosomal protein S9/S16 vm_RS12315 PF00572 Ribosomal protein L13 vm_RS12325 PF03969 AFG1-like ATPase vm_RS12335 PF00595 PDZ domain vm_RS12340 PF13180 PDZ domain vm_RS12345 PF01245 Ribosomal protein L19 vm_RS12350 PF01746 tRNA (Guanine-1)-methyltransferase vm_RS12355 PF05239 PRC-barrel domain vm_RS12355 PF01782 RimM N-terminal domain vm_RS12360 PF00886 Ribosomal protein S16 vm_RS12365 PF02978 Signal peptide binding domain vm_RS12365 PF02881 SRP54-type protein, helical bundle domain vm_RS12365 PF00448 SRP54-type protein, GTPase domain vm_RS12370 PF01578 Cytochrome C assembly protein vm_RS12375 PF01595 Cyclin M transmembrane N-terminal domain vm_RS12375 PF00571 CBS domain vm_RS12375 PF03471 Transporter associated domain vm_RS12380 PF02664 S-Ribosylhomocysteinase (LuxS) vm_RS12385 PF04262 Glutamate-cysteine ligase vm_RS12390 PF00675 Insulinase (Peptidase family M16) vm_RS12390 PF05193 Peptidase M16 inactive domain vm_RS12395 PF09335 SNARE associated Golgi protein vm_RS12400 PF08240 Alcohol dehydrogenase GroES-like domain vm_RS12400 PF00107 Zinc-binding dehydrogenase vm_RS12405 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit vm_RS12410 PF02436 Conserved carboxylase domain vm_RS12410 PF00364 Biotin-requiring enzyme vm_RS12410 PF00682 HMGL-like vm_RS12415 PF04277 Oxaloacetate decarboxylase, gamma chain vm_RS12460 PF02599 Global regulator protein family vm_RS12465 PF00696 Amino acid kinase family vm_RS12465 PF13840 ACT domain vm_RS12465 PF01842 ACT domain vm_RS12470 PF02272 DHHA1 domain vm_RS12470 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain vm_RS12470 PF01411 tRNA synthetases class II (A) vm_RS12475 PF02631 RecX family vm_RS12480 PF00154 recA bacterial DNA recombination protein vm_RS12485 PF02464 Competence-damaged protein vm_RS12490 PF00005 ABC transporter vm_RS12490 PF12857 TOBE-like domain vm_RS12495 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS12500 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS12510 PF00291 Pyridoxal-phosphate dependent enzyme vm_RS12515 PF00488 MutS domain V vm_RS12515 PF05190 MutS family domain IV vm_RS12515 PF05192 MutS domain III vm_RS12515 PF01624 MutS domain I vm_RS12515 PF05188 MutS domain II vm_RS12520 PF04542 Sigma-70 region 2 vm_RS12520 PF04545 Sigma-70, region 4 vm_RS12520 PF00140 Sigma-70 factor, region 1.2 vm_RS12520 PF04539 Sigma-70 region 3 vm_RS12525 PF01476 LysM domain vm_RS12525 PF01551 Peptidase family M23 vm_RS12535 PF01975 Survival protein SurE vm_RS12540 PF01142 tRNA pseudouridine synthase D (TruD) vm_RS12545 PF02542 YgbB family vm_RS12550 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase vm_RS12555 PF04977 Septum formation initiator vm_RS12560 PF02673 Bacitracin resistance protein BacA vm_RS12565 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) vm_RS12570 PF02152 Dihydroneopterin aldolase vm_RS12580 PF02660 Glycerol-3-phosphate acyltransferase vm_RS12585 PF00561 alpha/beta hydrolase fold vm_RS12590 PF00814 Glycoprotease family vm_RS12595 PF01165 Ribosomal protein S21 vm_RS12600 PF09424 Yqey-like protein vm_RS12605 PF01807 CHC2 zinc finger vm_RS12605 PF08278 DNA primase DnaG DnaB-binding vm_RS12605 PF08275 DNA primase catalytic core, N-terminal domain vm_RS12605 PF10410 DnaB-helicase binding domain of primase vm_RS12610 PF04542 Sigma-70 region 2 vm_RS12610 PF04539 Sigma-70 region 3 vm_RS12610 PF03979 Sigma-70 factor, region 1.1 vm_RS12610 PF04545 Sigma-70, region 4 vm_RS12610 PF00140 Sigma-70 factor, region 1.2 vm_RS12610 PF04546 Sigma-70, non-essential region vm_RS12620 PF00589 Phage integrase family vm_RS12620 PF13356 Arm DNA-binding domain vm_RS12675 PF06803 Protein of unknown function (DUF1232) vm_RS12690 PF04002 RadC-like JAB domain vm_RS12695 PF02371 Transposase IS116/IS110/IS902 family vm_RS12695 PF01548 Transposase vm_RS12735 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE vm_RS12765 PF01820 D-ala D-ala ligase N-terminus vm_RS12765 PF07478 D-ala D-ala ligase C-terminus vm_RS12770 PF00004 ATPase family associated with various cellular activities (AAA) vm_RS12770 PF07724 AAA domain (Cdc48 subfamily) vm_RS12770 PF10431 C-terminal, D2-small domain, of ClpB protein vm_RS12770 PF17871 AAA lid domain vm_RS12795 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath vm_RS12820 PF06715 Gp5 C-terminal repeat (3 copies) vm_RS12820 PF04717 Type VI secretion system, phage-baseplate injector vm_RS12835 PF17853 GGDEF-like domain vm_RS12835 PF12833 Helix-turn-helix domain vm_RS12855 PF00589 Phage integrase family vm_RS12855 PF02899 Phage integrase, N-terminal SAM-like domain vm_RS12910 PF08220 DeoR-like helix-turn-helix domain vm_RS12910 PF13280 WYL domain vm_RS12925 PF03480 Bacterial extracellular solute-binding protein, family 7 vm_RS12930 PF01380 SIS domain vm_RS12935 PF08220 DeoR-like helix-turn-helix domain vm_RS12935 PF00455 DeoR C terminal sensor domain vm_RS12940 PF00224 Pyruvate kinase, barrel domain vm_RS12940 PF02887 Pyruvate kinase, alpha/beta domain vm_RS12945 PF04402 Protein of unknown function (DUF541) vm_RS12950 PF03466 LysR substrate binding domain vm_RS12950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS12955 PF01810 LysE type translocator vm_RS12960 PF00924 Mechanosensitive ion channel vm_RS12960 PF05552 Conserved TM helix vm_RS12965 PF01116 Fructose-bisphosphate aldolase class-II vm_RS12970 PF00162 Phosphoglycerate kinase vm_RS12975 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain vm_RS12975 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain vm_RS12980 PF07715 TonB-dependent Receptor Plug Domain vm_RS12980 PF00593 TonB dependent receptor vm_RS12985 PF03466 LysR substrate binding domain vm_RS12985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS12990 PF02780 Transketolase, C-terminal domain vm_RS12990 PF02779 Transketolase, pyrimidine binding domain vm_RS12990 PF00456 Transketolase, thiamine diphosphate binding domain vm_RS13000 PF02772 S-adenosylmethionine synthetase, central domain vm_RS13000 PF00438 S-adenosylmethionine synthetase, N-terminal domain vm_RS13000 PF02773 S-adenosylmethionine synthetase, C-terminal domain vm_RS13005 PF10263 SprT-like family vm_RS13005 PF17283 SprT-like zinc ribbon domain vm_RS13010 PF04231 Endonuclease I vm_RS13015 PF04452 RNA methyltransferase vm_RS13020 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain vm_RS13020 PF02951 Prokaryotic glutathione synthetase, N-terminal domain vm_RS13025 PF02622 Uncharacterized ACR, COG1678 vm_RS13030 PF03652 Holliday junction resolvase vm_RS13035 PF00579 tRNA synthetases class I (W and Y) vm_RS13035 PF01479 S4 domain vm_RS13045 PF00437 Type II/IV secretion system protein vm_RS13050 PF00437 Type II/IV secretion system protein vm_RS13055 PF01168 Alanine racemase, N-terminal domain vm_RS13060 PF14748 Pyrroline-5-carboxylate reductase dimerisation vm_RS13060 PF03807 NADP oxidoreductase coenzyme F420-dependent vm_RS13065 PF02325 YGGT family vm_RS13070 PF02594 Uncharacterised ACR, YggU family COG1872 vm_RS13080 PF01725 Ham1 family vm_RS13085 PF04055 Radical SAM superfamily vm_RS13085 PF06969 HemN C-terminal domain vm_RS13095 PF04960 Glutaminase vm_RS13100 PF02390 Putative methyltransferase vm_RS13105 PF10576 Iron-sulfur binding domain of endonuclease III vm_RS13105 PF00730 HhH-GPD superfamily base excision DNA repair protein vm_RS13105 PF14815 NUDIX domain vm_RS13105 PF00633 Helix-hairpin-helix motif vm_RS13110 PF04362 Bacterial Fe(2+) trafficking vm_RS13115 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain vm_RS13115 PF01464 Transglycosylase SLT domain vm_RS13140 PF17200 Single Cache domain 2 vm_RS13140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS13140 PF00672 HAMP domain vm_RS13170 PF05099 Tellurite resistance protein TerB vm_RS13170 PF00226 DnaJ domain vm_RS13175 PF03968 OstA-like protein vm_RS13175 PF04453 LPS transport system D vm_RS13180 PF09312 SurA N-terminal domain vm_RS13185 PF04166 Pyridoxal phosphate biosynthetic protein PdxA vm_RS13190 PF00398 Ribosomal RNA adenine dimethylase vm_RS13195 PF04379 ApaG domain vm_RS13200 PF00149 Calcineurin-like phosphoesterase vm_RS13205 PF00186 Dihydrofolate reductase vm_RS13210 PF12821 Threonine/Serine exporter, ThrE vm_RS13215 PF06738 Putative threonine/serine exporter vm_RS13220 PF01018 GTP1/OBG vm_RS13220 PF01926 50S ribosome-binding GTPase vm_RS13225 PF01016 Ribosomal L27 protein vm_RS13230 PF00829 Ribosomal prokaryotic L21 protein vm_RS13235 PF00348 Polyprenyl synthetase vm_RS13240 PF13520 Amino acid permease vm_RS13245 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain vm_RS13245 PF00056 lactate/malate dehydrogenase, NAD binding domain vm_RS13250 PF01316 Arginine repressor, DNA binding domain vm_RS13250 PF02863 Arginine repressor, C-terminal domain vm_RS13255 PF16868 NMT1-like family vm_RS13265 PF00582 Universal stress protein family vm_RS13280 PF10282 Lactonase, 7-bladed beta-propeller vm_RS13285 PF02838 Glycosyl hydrolase family 20, domain 2 vm_RS13285 PF00728 Glycosyl hydrolase family 20, catalytic domain vm_RS13290 PF00474 Sodium:solute symporter family vm_RS13300 PF07969 Amidohydrolase family vm_RS13310 PF02685 Glucokinase vm_RS13310 PF01418 Helix-turn-helix domain, rpiR family vm_RS13310 PF01380 SIS domain vm_RS13325 PF13657 HipA N-terminal domain vm_RS13325 PF07804 HipA-like C-terminal domain vm_RS13395 PF06877 Regulator of ribonuclease activity B vm_RS13405 PF00970 Oxidoreductase FAD-binding domain vm_RS13405 PF00111 2Fe-2S iron-sulfur cluster binding domain vm_RS13405 PF00175 Oxidoreductase NAD-binding domain vm_RS13410 PF03063 Prismane/CO dehydrogenase family vm_RS13415 PF01523 Putative modulator of DNA gyrase vm_RS13420 PF00795 Carbon-nitrogen hydrolase vm_RS13425 PF13116 Protein of unknown function vm_RS13425 PF13502 AsmA-like C-terminal region vm_RS13430 PF00575 S1 RNA binding domain vm_RS13430 PF10150 Ribonuclease E/G family vm_RS13435 PF02545 Maf-like protein vm_RS13440 PF04093 rod shape-determining protein MreD vm_RS13445 PF04085 rod shape-determining protein MreC vm_RS13485 PF07963 Prokaryotic N-terminal methylation motif vm_RS13495 PF00482 Type II secretion system (T2SS), protein F vm_RS13500 PF00437 Type II/IV secretion system protein vm_RS13500 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain vm_RS13510 PF13401 AAA domain vm_RS13510 PF01471 Putative peptidoglycan binding domain vm_RS13515 PF11741 AMIN domain vm_RS13515 PF00263 Bacterial type II and III secretion system protein vm_RS13515 PF03958 Bacterial type II/III secretion system short domain vm_RS13515 PF07660 Secretin and TonB N terminus short domain vm_RS13535 PF00563 EAL domain vm_RS13535 PF17157 Gammaproteobacterial periplasmic sensor domain vm_RS13535 PF00990 Diguanylate cyclase, GGDEF domain vm_RS13540 PF00436 Single-strand binding protein family vm_RS13545 PF00196 Bacterial regulatory proteins, luxR family vm_RS13550 PF00483 Nucleotidyl transferase vm_RS13555 PF17755 UvrA DNA-binding domain vm_RS13555 PF00005 ABC transporter vm_RS13555 PF17760 UvrA interaction domain vm_RS13565 PF00266 Aminotransferase class-V vm_RS13570 PF00696 Amino acid kinase family vm_RS13570 PF01842 ACT domain vm_RS13575 PF02965 Vitamin B12 dependent methionine synthase, activation domain vm_RS13575 PF02574 Homocysteine S-methyltransferase vm_RS13575 PF02607 B12 binding domain vm_RS13575 PF00809 Pterin binding enzyme vm_RS13575 PF02310 B12 binding domain vm_RS13580 PF00999 Sodium/hydrogen exchanger family vm_RS13650 PF01507 Phosphoadenosine phosphosulfate reductase family vm_RS13655 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain vm_RS13655 PF01077 Nitrite and sulphite reductase 4Fe-4S domain vm_RS13660 PF00667 FAD binding domain vm_RS13660 PF00258 Flavodoxin vm_RS13660 PF00175 Oxidoreductase NAD-binding domain vm_RS13680 PF09583 Phage shock protein G (Phageshock_PspG) vm_RS13685 PF01207 Dihydrouridine synthase (Dus) vm_RS13690 PF01475 Ferric uptake regulator family vm_RS13700 PF00342 Phosphoglucose isomerase vm_RS13705 PF01894 Uncharacterised protein family UPF0047 vm_RS13710 PF01168 Alanine racemase, N-terminal domain vm_RS13710 PF00842 Alanine racemase, C-terminal domain vm_RS13715 PF03796 DnaB-like helicase C terminal domain vm_RS13715 PF00772 DnaB-like helicase N terminal domain vm_RS13725 PF03948 Ribosomal protein L9, C-terminal domain vm_RS13725 PF01281 Ribosomal protein L9, N-terminal domain vm_RS13730 PF01084 Ribosomal protein S18 vm_RS13735 PF00436 Single-strand binding protein family vm_RS13740 PF01250 Ribosomal protein S6 vm_RS13745 PF00210 Ferritin-like domain vm_RS13750 PF04324 BFD-like [2Fe-2S] binding domain vm_RS13755 PF03144 Elongation factor Tu domain 2 vm_RS13755 PF03143 Elongation factor Tu C-terminal domain vm_RS13755 PF00009 Elongation factor Tu GTP binding domain vm_RS13760 PF03764 Elongation factor G, domain IV vm_RS13760 PF03144 Elongation factor Tu domain 2 vm_RS13760 PF00009 Elongation factor Tu GTP binding domain vm_RS13760 PF14492 Elongation Factor G, domain II vm_RS13760 PF00679 Elongation factor G C-terminus vm_RS13765 PF00177 Ribosomal protein S7p/S5e vm_RS13770 PF00164 Ribosomal protein S12/S23 vm_RS13780 PF02635 DsrE/DsrF-like family vm_RS13785 PF02635 DsrE/DsrF-like family vm_RS13790 PF13309 HTH domain vm_RS13790 PF08348 YheO-like PAS domain vm_RS13795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase vm_RS13795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase vm_RS13805 PF04102 SlyX vm_RS13810 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) vm_RS13815 PF01145 SPFH domain / Band 7 family vm_RS13820 PF01145 SPFH domain / Band 7 family vm_RS13820 PF12221 Bacterial membrane protein N terminal vm_RS13825 PF01926 50S ribosome-binding GTPase vm_RS13825 PF13167 GTP-binding GTPase N-terminal vm_RS13825 PF16360 GTP-binding GTPase Middle Region vm_RS13830 PF17209 Hfq protein vm_RS13840 PF08676 MutL C terminal dimerisation domain vm_RS13840 PF01119 DNA mismatch repair protein, C-terminal domain vm_RS13845 PF01520 N-acetylmuramoyl-L-alanine amidase vm_RS13850 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE vm_RS13855 PF08331 Domain of unknown function (DUF1730) vm_RS13905 PF00929 Exonuclease vm_RS13910 PF03193 RsgA GTPase vm_RS13915 PF02666 Phosphatidylserine decarboxylase vm_RS13920 PF00939 Sodium:sulfate symporter transmembrane region vm_RS13930 PF01676 Metalloenzyme superfamily vm_RS13930 PF06415 BPG-independent PGAM N-terminus (iPGM_N) vm_RS13935 PF01551 Peptidase family M23 vm_RS13945 PF00440 Bacterial regulatory proteins, tetR family vm_RS13945 PF08360 QacR-like protein, C-terminal region vm_RS13950 PF01208 Uroporphyrinogen decarboxylase (URO-D) vm_RS13955 PF09297 NADH pyrophosphatase zinc ribbon domain vm_RS13955 PF00293 NUDIX domain vm_RS13960 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ vm_RS13965 PF04983 RNA polymerase Rpb1, domain 3 vm_RS13965 PF04998 RNA polymerase Rpb1, domain 5 vm_RS13965 PF05000 RNA polymerase Rpb1, domain 4 vm_RS13965 PF04997 RNA polymerase Rpb1, domain 1 vm_RS13965 PF00623 RNA polymerase Rpb1, domain 2 vm_RS13970 PF04560 RNA polymerase Rpb2, domain 7 vm_RS13970 PF00562 RNA polymerase Rpb2, domain 6 vm_RS13970 PF04565 RNA polymerase Rpb2, domain 3 vm_RS13970 PF04561 RNA polymerase Rpb2, domain 2 vm_RS13970 PF04563 RNA polymerase beta subunit vm_RS13970 PF10385 RNA polymerase beta subunit external 1 domain vm_RS13975 PF16320 Ribosomal protein L7/L12 dimerisation domain vm_RS13975 PF00542 Ribosomal protein L7/L12 C-terminal domain vm_RS13980 PF00466 Ribosomal protein L10 vm_RS13985 PF00687 Ribosomal protein L1p/L10e family vm_RS13990 PF00298 Ribosomal protein L11, RNA binding domain vm_RS13990 PF03946 Ribosomal protein L11, N-terminal domain vm_RS13995 PF02357 Transcription termination factor nusG vm_RS13995 PF00467 KOW motif vm_RS14000 PF00584 SecE/Sec61-gamma subunits of protein translocation complex vm_RS14005 PF03144 Elongation factor Tu domain 2 vm_RS14005 PF00009 Elongation factor Tu GTP binding domain vm_RS14005 PF03143 Elongation factor Tu C-terminal domain vm_RS14030 PF00485 Phosphoribulokinase / Uridine kinase family vm_RS14035 PF08279 HTH domain vm_RS14035 PF03099 Biotin/lipoate A/B protein ligase family vm_RS14035 PF02237 Biotin protein ligase C terminal domain vm_RS14040 PF01565 FAD binding domain vm_RS14040 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain vm_RS14055 PF13091 PLD-like domain vm_RS14085 PF00175 Oxidoreductase NAD-binding domain vm_RS14090 PF00970 Oxidoreductase FAD-binding domain vm_RS14090 PF00111 2Fe-2S iron-sulfur cluster binding domain vm_RS14090 PF00175 Oxidoreductase NAD-binding domain vm_RS14095 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase vm_RS14105 PF07497 Rho termination factor, RNA-binding domain vm_RS14105 PF07498 Rho termination factor, N-terminal domain vm_RS14105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain vm_RS14110 PF00085 Thioredoxin vm_RS14115 PF00271 Helicase conserved C-terminal domain vm_RS14115 PF00270 DEAD/DEAH box helicase vm_RS14120 PF02541 Ppx/GppA phosphatase family vm_RS14125 PF00512 His Kinase A (phospho-acceptor) domain vm_RS14125 PF09456 RcsC Alpha-Beta-Loop (ABL) vm_RS14125 PF00072 Response regulator receiver domain vm_RS14125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS14130 PF12832 MFS_1 like family vm_RS14150 PF16177 Acetyl-coenzyme A synthetase N-terminus vm_RS14150 PF13193 AMP-binding enzyme C-terminal domain vm_RS14150 PF00501 AMP-binding enzyme vm_RS14155 PF01220 Dehydroquinase class II vm_RS14160 PF00364 Biotin-requiring enzyme vm_RS14165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain vm_RS14165 PF00289 Biotin carboxylase, N-terminal domain vm_RS14165 PF02785 Biotin carboxylase C-terminal domain vm_RS14175 PF01207 Dihydrouridine synthase (Dus) vm_RS14180 PF02954 Bacterial regulatory protein, Fis family vm_RS14185 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family vm_RS14185 PF00356 Bacterial regulatory proteins, lacI family vm_RS14190 PF00920 Dehydratase family vm_RS14195 PF01202 Shikimate kinase vm_RS14200 PF02447 GntP family permease vm_RS14205 PF01081 KDPG and KHG aldolase vm_RS14210 PF00593 TonB dependent receptor vm_RS14210 PF07715 TonB-dependent Receptor Plug Domain vm_RS14220 PF17200 Single Cache domain 2 vm_RS14220 PF00672 HAMP domain vm_RS14220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS14225 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain vm_RS14225 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain vm_RS14225 PF01276 Orn/Lys/Arg decarboxylase, major domain vm_RS14230 PF13520 Amino acid permease vm_RS14235 PF00486 Transcriptional regulatory protein, C terminal vm_RS14235 PF18500 CadC C-terminal domain 1 vm_RS14240 PF13411 MerR HTH family regulatory protein vm_RS14245 PF02142 MGS-like domain vm_RS14245 PF01808 AICARFT/IMPCHase bienzyme vm_RS14250 PF02843 Phosphoribosylglycinamide synthetase, C domain vm_RS14250 PF02844 Phosphoribosylglycinamide synthetase, N domain vm_RS14250 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain vm_RS14260 PF00216 Bacterial DNA-binding protein vm_RS14265 PF01595 Cyclin M transmembrane N-terminal domain vm_RS14265 PF00571 CBS domain vm_RS14270 PF04222 Protein of unknown function (DUF416) vm_RS14275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain vm_RS14280 PF03167 Uracil DNA glycosylase superfamily vm_RS14285 PF00924 Mechanosensitive ion channel vm_RS14290 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain vm_RS14290 PF10996 Beta-Casp domain vm_RS14290 PF00753 Metallo-beta-lactamase superfamily vm_RS14295 PF02719 Polysaccharide biosynthesis protein vm_RS14300 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family vm_RS14310 PF02397 Bacterial sugar transferase vm_RS14320 PF00156 Phosphoribosyl transferase domain vm_RS14345 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family vm_RS14350 PF00132 Bacterial transferase hexapeptide (six repeats) vm_RS14355 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain vm_RS14355 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain vm_RS14355 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain vm_RS14360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold vm_RS14370 PF01370 NAD dependent epimerase/dehydratase family vm_RS14375 PF00457 Glycosyl hydrolases family 11 vm_RS14375 PF01522 Polysaccharide deacetylase vm_RS14390 PF01075 Glycosyltransferase family 9 (heptosyltransferase) vm_RS14400 PF04488 Glycosyltransferase sugar-binding region containing DXD motif vm_RS14405 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) vm_RS14435 PF01075 Glycosyltransferase family 9 (heptosyltransferase) vm_RS14440 PF00535 Glycosyl transferase family 2 vm_RS14445 PF01075 Glycosyltransferase family 9 (heptosyltransferase) vm_RS14450 PF01467 Cytidylyltransferase-like vm_RS14455 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain vm_RS14455 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain vm_RS14455 PF06827 Zinc finger found in FPG and IleRS vm_RS14465 PF00471 Ribosomal protein L33 vm_RS14470 PF00830 Ribosomal L28 family vm_RS14475 PF04002 RadC-like JAB domain vm_RS14480 PF00672 HAMP domain vm_RS14480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain vm_RS14480 PF17200 Single Cache domain 2 vm_RS14485 PF04127 DNA / pantothenate metabolism flavoprotein vm_RS14485 PF02441 Flavoprotein vm_RS14490 PF00440 Bacterial regulatory proteins, tetR family vm_RS14495 PF03279 Bacterial lipid A biosynthesis acyltransferase vm_RS14500 PF03279 Bacterial lipid A biosynthesis acyltransferase vm_RS14505 PF00156 Phosphoribosyl transferase domain vm_RS14510 PF01138 3' exoribonuclease family, domain 1 vm_RS14510 PF03725 3' exoribonuclease family, domain 2 vm_RS14515 PF03755 YicC-like family, N-terminal region vm_RS14515 PF08340 Domain of unknown function (DUF1732) vm_RS14520 PF03350 Uncharacterized protein family, UPF0114 vm_RS14525 PF02378 Phosphotransferase system, EIIC vm_RS14525 PF00367 phosphotransferase system, EIIB vm_RS14530 PF13580 SIS domain vm_RS14540 PF01380 SIS domain vm_RS14540 PF01418 Helix-turn-helix domain, rpiR family vm_RS14545 PF01032 FecCD transport family vm_RS14550 PF01497 Periplasmic binding protein vm_RS14555 PF00005 ABC transporter vm_RS14560 PF00593 TonB dependent receptor vm_RS14560 PF07715 TonB-dependent Receptor Plug Domain vm_RS14575 PF00271 Helicase conserved C-terminal domain vm_RS14575 PF00570 HRDC domain vm_RS14575 PF16124 RecQ zinc-binding vm_RS14575 PF09382 RQC domain vm_RS14575 PF00270 DEAD/DEAH box helicase vm_RS14580 PF00892 EamA-like transporter family vm_RS14595 PF01810 LysE type translocator vm_RS14605 PF00580 UvrD/REP helicase N-terminal domain vm_RS14605 PF13361 UvrD-like helicase C-terminal domain vm_RS14610 PF01432 Peptidase family M3 vm_RS14615 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ vm_RS14620 PF07992 Pyridine nucleotide-disulphide oxidoreductase vm_RS14620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain vm_RS14630 PF12911 N-terminal TM domain of oligopeptide transport permease C vm_RS14630 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS14635 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS14640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle vm_RS14645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region vm_RS14645 PF00005 ABC transporter vm_RS14680 PF13442 Cytochrome C oxidase, cbb3-type, subunit III vm_RS14685 PF13361 UvrD-like helicase C-terminal domain vm_RS14685 PF00580 UvrD/REP helicase N-terminal domain vm_RS14690 PF00440 Bacterial regulatory proteins, tetR family vm_RS14695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion vm_RS14700 PF00873 AcrB/AcrD/AcrF family vm_RS14705 PF04380 Membrane fusogenic activity vm_RS14710 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain vm_RS14710 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain vm_RS14715 PF03466 LysR substrate binding domain vm_RS14715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS14785 PF12724 Flavodoxin domain vm_RS14790 PF02386 Cation transport protein vm_RS14795 PF01205 Uncharacterized protein family UPF0029 vm_RS14795 PF09186 Domain of unknown function (DUF1949) vm_RS14800 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain vm_RS14800 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain vm_RS14800 PF00378 Enoyl-CoA hydratase/isomerase vm_RS14805 PF00108 Thiolase, N-terminal domain vm_RS14805 PF02803 Thiolase, C-terminal domain vm_RS14810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS14810 PF03466 LysR substrate binding domain vm_RS14815 PF07690 Major Facilitator Superfamily vm_RS14820 PF12804 MobA-like NTP transferase domain vm_RS14820 PF00132 Bacterial transferase hexapeptide (six repeats) vm_RS14825 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain vm_RS14825 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain vm_RS14830 PF02874 ATP synthase alpha/beta family, beta-barrel domain vm_RS14830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain vm_RS14835 PF00231 ATP synthase vm_RS14840 PF02874 ATP synthase alpha/beta family, beta-barrel domain vm_RS14840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain vm_RS14840 PF00306 ATP synthase alpha/beta chain, C terminal domain vm_RS14845 PF00213 ATP synthase delta (OSCP) subunit vm_RS14850 PF00430 ATP synthase B/B' CF(0) vm_RS14855 PF00137 ATP synthase subunit C vm_RS14860 PF00119 ATP synthase A chain vm_RS14865 PF03899 ATP synthase I chain vm_RS14870 PF02195 ParB-like nuclease domain vm_RS14870 PF17762 HTH domain found in ParB protein vm_RS14875 PF13614 AAA domain vm_RS14880 PF02527 rRNA small subunit methyltransferase G vm_RS14885 PF13932 GidA associated domain vm_RS14885 PF01134 Glucose inhibited division protein A vm_RS14890 PF00258 Flavodoxin vm_RS14895 PF03466 LysR substrate binding domain vm_RS14895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family vm_RS14910 PF00171 Aldehyde dehydrogenase family vm_RS14920 PF02796 Helix-turn-helix domain of resolvase vm_RS14920 PF00239 Resolvase, N terminal domain vm_RS14940 PF00580 UvrD/REP helicase N-terminal domain vm_RS14940 PF13361 UvrD-like helicase C-terminal domain vm_RS14990 PF06122 Conjugative relaxosome accessory transposon protein vm_RS15035 PF02899 Phage integrase, N-terminal SAM-like domain vm_RS15035 PF00589 Phage integrase family vm_RS15040 PF01926 50S ribosome-binding GTPase vm_RS15040 PF12631 MnmE helical domain vm_RS15040 PF10396 GTP-binding protein TrmE N-terminus vm_RS15045 PF14849 YidC periplasmic domain vm_RS15045 PF02096 60Kd inner membrane protein vm_RS15050 PF01809 Putative membrane protein insertion efficiency factor vm_RS15055 PF00825 Ribonuclease P vm_RS15060 PF00468 Ribosomal protein L34 vm_RS15065 PF00005 ABC transporter vm_RS15070 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS15075 PF00497 Bacterial extracellular solute-binding proteins, family 3 vm_RS15090 PF02768 DNA polymerase III beta subunit, C-terminal domain vm_RS15090 PF02767 DNA polymerase III beta subunit, central domain vm_RS15090 PF00712 DNA polymerase III beta subunit, N-terminal domain vm_RS15105 PF00204 DNA gyrase B vm_RS15105 PF00986 DNA gyrase B subunit, carboxyl terminus vm_RS15105 PF01751 Toprim domain vm_RS15105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS15105 PF18053 DNA gyrase B subunit insert domain vm_RS15120 PF01751 Toprim domain vm_RS15120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS15120 PF18053 DNA gyrase B subunit insert domain vm_RS15120 PF00986 DNA gyrase B subunit, carboxyl terminus vm_RS15120 PF00204 DNA gyrase B vm_RS15285 PF01636 Phosphotransferase enzyme family vm_RS15475 PF02537 CrcB-like protein, Camphor Resistance (CrcB) vm_RS15495 PF02581 Thiamine monophosphate synthase vm_RS15540 PF07690 Major Facilitator Superfamily vm_RS15670 PF14706 Transposase DNA-binding vm_RS15670 PF02281 Transposase Tn5 dimerisation domain vm_RS15670 PF01609 Transposase DDE domain vm_RS15720 PF01295 Adenylate cyclase, class-I vm_RS15720 PF12633 Adenylate cyclase NT domain vm_RS15725 PF12633 Adenylate cyclase NT domain vm_RS15725 PF01295 Adenylate cyclase, class-I vm_RS15790 PF00563 EAL domain vm_RS15790 PF08668 HDOD domain vm_RS16260 PF17191 RecG wedge domain vm_RS16260 PF00271 Helicase conserved C-terminal domain vm_RS16260 PF00270 DEAD/DEAH box helicase vm_RS16570 PF00742 Homoserine dehydrogenase vm_RS16570 PF00696 Amino acid kinase family vm_RS16570 PF03447 Homoserine dehydrogenase, NAD binding domain vm_RS16650 PF00118 TCP-1/cpn60 chaperonin family vm_RS16715 PF00311 Phosphoenolpyruvate carboxylase vm_RS16930 PF08206 Ribonuclease B OB domain vm_RS16930 PF17876 Cold shock domain vm_RS16930 PF00575 S1 RNA binding domain vm_RS16930 PF08461 Ribonuclease R winged-helix domain vm_RS16930 PF00773 RNB domain vm_RS17160 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS17280 PF00271 Helicase conserved C-terminal domain vm_RS17280 PF12137 RNA polymerase recycling family C-terminal vm_RS17280 PF00176 SNF2 family N-terminal domain vm_RS17280 PF18337 RapA N-terminal Tudor like domain vm_RS17280 PF18339 RapA N-terminal Tudor like domain 1 vm_RS17380 PF08502 LeuA allosteric (dimerisation) domain vm_RS17380 PF00682 HMGL-like vm_RS17725 PF00149 Calcineurin-like phosphoesterase vm_RS17725 PF02872 5'-nucleotidase, C-terminal domain vm_RS17790 PF02875 Mur ligase family, glutamate ligase domain vm_RS17790 PF01225 Mur ligase family, catalytic domain vm_RS17790 PF08245 Mur ligase middle domain vm_RS17815 PF01225 Mur ligase family, catalytic domain vm_RS17815 PF02875 Mur ligase family, glutamate ligase domain vm_RS17815 PF08245 Mur ligase middle domain vm_RS17990 PF18415 Histidine kinase receptor ArcB trans-membrane domain vm_RS17990 PF00072 Response regulator receiver domain vm_RS17990 PF00989 PAS fold vm_RS17990 PF01627 Hpt domain vm_RS17990 PF00512 His Kinase A (phospho-acceptor) domain vm_RS17990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS18120 PF00679 Elongation factor G C-terminus vm_RS18120 PF03144 Elongation factor Tu domain 2 vm_RS18120 PF14492 Elongation Factor G, domain II vm_RS18120 PF00009 Elongation factor Tu GTP binding domain vm_RS18120 PF03764 Elongation factor G, domain IV vm_RS18430 PF02769 AIR synthase related protein, C-terminal domain vm_RS18430 PF00586 AIR synthase related protein, N-terminal domain vm_RS18540 PF07733 Bacterial DNA polymerase III alpha NTPase domain vm_RS18540 PF17657 Bacterial DNA polymerase III alpha subunit finger domain vm_RS18540 PF01336 OB-fold nucleic acid binding domain vm_RS18540 PF02811 PHP domain vm_RS18540 PF14579 Helix-hairpin-helix motif vm_RS18630 PF13230 Glutamine amidotransferases class-II vm_RS18650 PF01479 S4 domain vm_RS18650 PF00849 RNA pseudouridylate synthase vm_RS18800 PF00700 Bacterial flagellin C-terminal helical region vm_RS18800 PF00669 Bacterial flagellin N-terminal helical region vm_RS18800 PF07196 Flagellin hook IN motif vm_RS18900 PF01594 AI-2E family transporter vm_RS19025 PF08345 Flagellar M-ring protein C-terminal vm_RS19025 PF01514 Secretory protein of YscJ/FliF family vm_RS19170 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II vm_RS19170 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain vm_RS19170 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III vm_RS19170 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I vm_RS19305 PF00072 Response regulator receiver domain vm_RS19305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS19305 PF02895 Signal transducing histidine kinase, homodimeric domain vm_RS19305 PF01584 CheW-like domain vm_RS19305 PF01627 Hpt domain vm_RS19390 PF01131 DNA topoisomerase vm_RS19390 PF01751 Toprim domain vm_RS19555 PF00209 Sodium:neurotransmitter symporter family vm_RS19645 PF07992 Pyridine nucleotide-disulphide oxidoreductase vm_RS19645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family vm_RS19855 PF05209 Septum formation inhibitor MinC, N-terminal domain vm_RS19855 PF03775 Septum formation inhibitor MinC, C-terminal domain vm_RS19985 PF02743 Cache domain vm_RS19985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase vm_RS19985 PF00512 His Kinase A (phospho-acceptor) domain vm_RS20435 PF00005 ABC transporter vm_RS20445 PF00528 Binding-protein-dependent transport system inner membrane component vm_RS20480 PF13307 Helicase C-terminal domain vm_RS20480 PF06733 DEAD_2