vm_RS02005 506aca06406bb5a23accfbeabd9dcebe 123 SUPERFAMILY SSF50193 2 122 6.67E-52 T 11-11-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 vm_RS02005 506aca06406bb5a23accfbeabd9dcebe 123 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 11-11-2016 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02005 506aca06406bb5a23accfbeabd9dcebe 123 Pfam PF00238 Ribosomal protein L14p/L23e 1 123 2.3E-55 T 11-11-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 vm_RS02005 506aca06406bb5a23accfbeabd9dcebe 123 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 123 28.581 T 11-11-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 vm_RS02005 506aca06406bb5a23accfbeabd9dcebe 123 SMART SM01374 1 123 2.8E-86 T 11-11-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 vm_RS02005 506aca06406bb5a23accfbeabd9dcebe 123 Gene3D G3DSA:2.40.150.20 1 123 7.9E-56 T 11-11-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 vm_RS02005 506aca06406bb5a23accfbeabd9dcebe 123 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 123 8.6E-59 T 11-11-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 vm_RS13980 c71d8d323568f3585c8f87f14d127938 162 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 11-11-2016 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13980 c71d8d323568f3585c8f87f14d127938 162 SUPERFAMILY SSF160369 4 158 4.71E-44 T 11-11-2016 vm_RS13980 c71d8d323568f3585c8f87f14d127938 162 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 159 23.936 T 11-11-2016 IPR022973 Ribosomal protein L10 vm_RS13980 c71d8d323568f3585c8f87f14d127938 162 Pfam PF00466 Ribosomal protein L10 5 101 2.3E-26 T 11-11-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Gene3D G3DSA:3.90.199.10 34 216 2.8E-84 T 11-11-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 1 865 24.68 T 11-11-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 SUPERFAMILY SSF56719 30 520 7.06E-187 T 11-11-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Gene3D G3DSA:2.120.10.90 530 863 2.6E-138 T 11-11-2016 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 SUPERFAMILY SSF101904 532 873 7.59E-107 T 11-11-2016 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Gene3D G3DSA:1.10.268.10 362 496 2.6E-50 T 11-11-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 735 761 1.7E-6 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 537 583 1.6E-8 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 767 813 6.0E-15 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 587 636 4.9E-11 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 692 709 0.3 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 644 687 1.2E-7 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 817 863 9.5E-13 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 505 3.1E-157 T 11-11-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 Gene3D G3DSA:3.30.1360.40 236 332 1.0E-39 T 11-11-2016 IPR024946 Arginine repressor C-terminal-like domain vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 863 0.0 T 11-11-2016 vm_RS08585 d466c84b7f5138157789adb8fccad48b 894 SMART SM00434 11 498 4.6E-303 T 11-11-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 SUPERFAMILY SSF52540 5 211 1.44E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 Gene3D G3DSA:2.40.50.250 487 581 4.2E-40 T 11-11-2016 vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 155 5.9E-24 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 48 63 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 SUPERFAMILY SSF54980 306 391 3.31E-16 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 Gene3D G3DSA:3.30.70.240 405 484 2.3E-32 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 SUPERFAMILY SSF54980 402 516 2.78E-27 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 Gene3D G3DSA:3.40.50.300 6 209 4.1E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 Pfam PF03144 Elongation factor Tu domain 2 223 293 2.4E-9 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 PRINTS PR00315 GTP-binding elongation factor signature 75 85 1.8E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 PRINTS PR00315 GTP-binding elongation factor signature 91 102 1.8E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 PRINTS PR00315 GTP-binding elongation factor signature 11 24 1.8E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 PRINTS PR00315 GTP-binding elongation factor signature 55 63 1.8E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 PRINTS PR00315 GTP-binding elongation factor signature 127 136 1.8E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 Gene3D G3DSA:2.40.30.10 210 307 8.9E-27 T 11-11-2016 vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 Gene3D G3DSA:3.30.70.870 308 404 9.2E-39 T 11-11-2016 vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 Pfam PF00679 Elongation factor G C-terminus 399 481 3.7E-22 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 Pfam PF00009 Elongation factor Tu GTP binding domain 8 198 3.4E-57 T 11-11-2016 vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 SUPERFAMILY SSF50447 155 303 5.96E-33 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS00835 898c04cc72c7670562408ab257be4dc0 609 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 9 603 3.5E-296 T 11-11-2016 IPR006298 GTP-binding protein TypA GO:0005525 vm_RS08405 e8801d0e96db2e698914913f5e344cd9 102 SUPERFAMILY SSF46973 2 98 8.89E-34 T 11-11-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 vm_RS08405 e8801d0e96db2e698914913f5e344cd9 102 PIRSF PIRSF000699 1 102 2.7E-38 T 11-11-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 vm_RS08405 e8801d0e96db2e698914913f5e344cd9 102 Gene3D G3DSA:1.20.58.80 2 100 1.2E-38 T 11-11-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 vm_RS08405 e8801d0e96db2e698914913f5e344cd9 102 Pfam PF02255 PTS system, Lactose/Cellobiose specific IIA subunit 6 98 9.6E-34 T 11-11-2016 IPR003188 Phosphotransferase system, lactose/cellobiose-specific IIA subunit GO:0009401 vm_RS11190 312469ba6fa836270eb701592a28336a 1099 Gene3D G3DSA:3.40.50.300 951 1072 3.5E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11190 312469ba6fa836270eb701592a28336a 1099 Gene3D G3DSA:3.40.50.300 874 913 2.5E-21 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11190 312469ba6fa836270eb701592a28336a 1099 Gene3D G3DSA:3.40.50.300 333 395 2.5E-21 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11190 312469ba6fa836270eb701592a28336a 1099 Gene3D G3DSA:3.40.50.300 795 837 2.5E-21 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11190 312469ba6fa836270eb701592a28336a 1099 Gene3D G3DSA:3.40.50.300 430 494 2.5E-21 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11190 312469ba6fa836270eb701592a28336a 1099 Pfam PF13086 AAA domain 361 834 1.5E-11 T 11-11-2016 vm_RS11190 312469ba6fa836270eb701592a28336a 1099 Pfam PF13087 AAA domain 890 1064 5.2E-13 T 11-11-2016 vm_RS11190 312469ba6fa836270eb701592a28336a 1099 SUPERFAMILY SSF52540 632 645 7.71E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11190 312469ba6fa836270eb701592a28336a 1099 SUPERFAMILY SSF52540 885 1066 7.71E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11190 312469ba6fa836270eb701592a28336a 1099 SUPERFAMILY SSF52540 353 394 7.71E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11190 312469ba6fa836270eb701592a28336a 1099 SUPERFAMILY SSF52540 433 458 7.71E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11190 312469ba6fa836270eb701592a28336a 1099 SUPERFAMILY SSF52540 774 832 7.71E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00370 c5b5cbd52f3f8d06e0dc355a934a0c25 175 Gene3D G3DSA:1.20.1260.10 1 162 6.9E-63 T 11-11-2016 IPR012347 Ferritin-related vm_RS00370 c5b5cbd52f3f8d06e0dc355a934a0c25 175 SUPERFAMILY SSF47240 1 159 6.1E-59 T 11-11-2016 IPR009078 Ferritin-like superfamily vm_RS00370 c5b5cbd52f3f8d06e0dc355a934a0c25 175 Pfam PF00210 Ferritin-like domain 8 143 1.3E-39 T 11-11-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 PIRSF PIRSF019574 1 343 2.6E-109 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 Gene3D G3DSA:3.40.190.10 27 143 3.7E-23 T 11-11-2016 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 91 104 1.2E-70 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 75 89 1.2E-70 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 148 162 1.2E-70 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 166 185 1.2E-70 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 122 138 1.2E-70 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 203 222 1.2E-70 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 247 266 1.2E-70 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 32 48 1.2E-70 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 48 69 1.2E-70 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 Pfam PF13416 Bacterial extracellular solute-binding protein 42 301 7.7E-38 T 11-11-2016 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 SUPERFAMILY SSF53850 26 330 1.13E-86 T 11-11-2016 vm_RS07640 b67ccc07b1398691671fdedc975501b4 343 Gene3D G3DSA:3.40.190.10 144 287 1.2E-56 T 11-11-2016 vm_RS05715 540dda03cc920ff803881a7917f09a48 166 Pfam PF03887 YfbU domain 1 166 3.0E-70 T 11-11-2016 IPR005587 Uncharacterised protein family UPF0304, YfbU vm_RS05715 540dda03cc920ff803881a7917f09a48 166 Hamap MF_00762 UPF0304 protein YfbU [yfbU]. 1 166 37.561 T 11-11-2016 IPR005587 Uncharacterised protein family UPF0304, YfbU vm_RS05715 540dda03cc920ff803881a7917f09a48 166 PIRSF PIRSF006272 1 166 3.2E-81 T 11-11-2016 IPR005587 Uncharacterised protein family UPF0304, YfbU vm_RS05715 540dda03cc920ff803881a7917f09a48 166 Gene3D G3DSA:1.10.3190.10 53 166 6.0E-47 T 11-11-2016 IPR023146 YfbU, alpha-helical bundle domain vm_RS05715 540dda03cc920ff803881a7917f09a48 166 ProDom PD035118 UPF0304 YFBU PLASMID YPO2563/Y1624/YP2374 YBFU PM1500 OXYGEN ECA3037 VV12093 PROTEIN 1 166 5.0E-92 T 11-11-2016 IPR005587 Uncharacterised protein family UPF0304, YfbU vm_RS05715 540dda03cc920ff803881a7917f09a48 166 SUPERFAMILY SSF116960 1 166 1.7E-63 T 11-11-2016 vm_RS05715 540dda03cc920ff803881a7917f09a48 166 Gene3D G3DSA:1.10.287.680 1 52 1.0E-29 T 11-11-2016 IPR023145 YfbU, helix-hairpin domain vm_RS03640 169a4e04794a13475686b57bdcf460a7 452 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 4 452 7.5E-138 T 11-11-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 vm_RS03640 169a4e04794a13475686b57bdcf460a7 452 SMART SM00228 212 281 7.0E-6 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS03640 169a4e04794a13475686b57bdcf460a7 452 SMART SM00228 115 186 0.0055 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS03640 169a4e04794a13475686b57bdcf460a7 452 SUPERFAMILY SSF50156 91 184 4.6E-13 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS03640 169a4e04794a13475686b57bdcf460a7 452 SUPERFAMILY SSF50156 196 291 1.3E-16 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS03640 169a4e04794a13475686b57bdcf460a7 452 Pfam PF02163 Peptidase family M50 10 440 2.0E-86 T 11-11-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033 vm_RS03640 169a4e04794a13475686b57bdcf460a7 452 Gene3D G3DSA:2.30.42.10 95 183 2.4E-13 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS03640 169a4e04794a13475686b57bdcf460a7 452 Gene3D G3DSA:2.30.42.10 202 291 1.6E-16 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 Gene3D G3DSA:3.30.70.380 703 794 2.3E-30 T 11-11-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 SUPERFAMILY SSF50249 40 192 4.41E-47 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 Gene3D G3DSA:2.40.50.140 43 153 7.9E-44 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 SUPERFAMILY SSF54991 697 794 6.54E-30 T 11-11-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 SMART SM00874 403 471 9.5E-31 T 11-11-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 Gene3D G3DSA:3.30.56.10 155 184 3.1E-25 T 11-11-2016 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 Gene3D G3DSA:3.30.56.10 1 38 3.1E-25 T 11-11-2016 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 Gene3D G3DSA:3.50.40.10 198 392 1.8E-86 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 SMART SM00873 212 385 6.0E-100 T 11-11-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 788 46.92 T 11-11-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 SMART SM00896 701 794 5.6E-45 T 11-11-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 SUPERFAMILY SSF56037 196 394 3.4E-78 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 Pfam PF01588 Putative tRNA binding domain 45 145 7.6E-26 T 11-11-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 794 9.4E-282 T 11-11-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 SUPERFAMILY SSF46955 403 475 4.39E-20 T 11-11-2016 IPR009061 Putative DNA-binding domain vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 Pfam PF03484 tRNA synthetase B5 domain 406 471 6.0E-20 T 11-11-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 Pfam PF03483 B3/4 domain 212 385 1.7E-72 T 11-11-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 Pfam PF03147 Ferredoxin-fold anticodon binding domain 701 794 1.1E-28 T 11-11-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 Gene3D G3DSA:3.30.930.10 495 689 1.1E-67 T 11-11-2016 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 SUPERFAMILY SSF55681 467 689 1.34E-54 T 11-11-2016 vm_RS08740 f6ec98e3de37f4e5ae525c343da72a12 795 Gene3D G3DSA:3.30.56.20 402 475 1.3E-27 T 11-11-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 vm_RS12725 1046b4fb3b7c90f08ac75f36addeb810 1153 Pfam PF14331 ImcF-related N-terminal domain 168 419 5.5E-52 T 11-11-2016 IPR025743 ImcF-related, N-terminal domain vm_RS12725 1046b4fb3b7c90f08ac75f36addeb810 1153 Pfam PF06744 Type VI secretion protein IcmF C-terminal 903 1101 2.1E-49 T 11-11-2016 IPR010623 Type VI secretion system IcmF, C-terminal vm_RS12725 1046b4fb3b7c90f08ac75f36addeb810 1153 Pfam PF06761 Intracellular multiplication and human macrophage-killing 474 770 8.6E-46 T 11-11-2016 IPR009612 ImcF-related vm_RS12725 1046b4fb3b7c90f08ac75f36addeb810 1153 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 6 1151 1.6E-173 T 11-11-2016 IPR017731 Type VI secretion system, IcmF vm_RS10860 3e8085f1c8e35526cfda89ee611597de 554 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 551 5.7E-173 T 11-11-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 vm_RS10860 3e8085f1c8e35526cfda89ee611597de 554 Gene3D G3DSA:3.40.50.300 1 205 3.6E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10860 3e8085f1c8e35526cfda89ee611597de 554 PIRSF PIRSF003128 1 554 1.2E-161 T 11-11-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 vm_RS10860 3e8085f1c8e35526cfda89ee611597de 554 SUPERFAMILY SSF52540 1 199 6.47E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10860 3e8085f1c8e35526cfda89ee611597de 554 SUPERFAMILY SSF52540 351 509 6.47E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10860 3e8085f1c8e35526cfda89ee611597de 554 SUPERFAMILY SSF52540 287 322 6.47E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10860 3e8085f1c8e35526cfda89ee611597de 554 Gene3D G3DSA:3.40.50.300 431 496 3.5E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10860 3e8085f1c8e35526cfda89ee611597de 554 Gene3D G3DSA:3.40.50.300 370 387 3.5E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10860 3e8085f1c8e35526cfda89ee611597de 554 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 503 2.3E-17 T 11-11-2016 IPR003395 RecF/RecN/SMC, N-terminal vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 651 26.047 T 11-11-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 SUPERFAMILY SSF118116 472 648 7.98E-40 T 11-11-2016 vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 SUPERFAMILY SSF54211 191 329 1.67E-37 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 SMART SM01340 212 330 3.3E-57 T 11-11-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 SMART SM00853 475 612 2.5E-19 T 11-11-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 SUPERFAMILY SSF55874 1 209 4.32E-55 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 93 99 - T 11-11-2016 IPR014762 DNA mismatch repair, conserved site vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 24 119 1.8E-12 T 11-11-2016 vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 213 329 1.6E-39 T 11-11-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 Gene3D G3DSA:3.30.565.10 1 208 1.3E-77 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 Pfam PF08676 MutL C terminal dimerisation domain 472 610 5.9E-32 T 11-11-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 1 310 2.8E-103 T 11-11-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 vm_RS13840 d7a941aa3aab2f4614cfad5f22d0493a 653 Gene3D G3DSA:3.30.230.10 218 329 1.1E-39 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS13515 ad6768667695c84b68af2408740beb07 558 Pfam PF00263 Bacterial type II and III secretion system protein 359 534 5.0E-41 T 11-11-2016 IPR004846 Type II/III secretion system GO:0009306 vm_RS13515 ad6768667695c84b68af2408740beb07 558 SMART SM00965 93 141 6.6E-6 T 11-11-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 vm_RS13515 ad6768667695c84b68af2408740beb07 558 TIGRFAM TIGR02519 pilus_MshL: pilus (MSHA type) biogenesis protein MshL 241 534 2.0E-106 T 11-11-2016 IPR013358 Pilus biogenesis, MshL vm_RS13515 ad6768667695c84b68af2408740beb07 558 PRINTS PR00811 Bacterial general secretion pathway protein D signature 354 378 1.3E-17 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS13515 ad6768667695c84b68af2408740beb07 558 PRINTS PR00811 Bacterial general secretion pathway protein D signature 522 536 1.3E-17 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS13515 ad6768667695c84b68af2408740beb07 558 PRINTS PR00811 Bacterial general secretion pathway protein D signature 276 286 1.3E-17 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS13515 ad6768667695c84b68af2408740beb07 558 PRINTS PR00811 Bacterial general secretion pathway protein D signature 499 517 1.3E-17 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS13515 ad6768667695c84b68af2408740beb07 558 Pfam PF07655 Secretin N-terminal domain 145 247 2.7E-25 T 11-11-2016 IPR011514 Secretin, N-terminal GO:0009297|GO:0019867 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 SUPERFAMILY SSF51445 258 618 3.46E-127 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 Gene3D G3DSA:3.30.379.10 133 255 1.3E-22 T 11-11-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 SUPERFAMILY SSF55545 125 257 9.57E-24 T 11-11-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 139 255 3.3E-19 T 11-11-2016 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 Gene3D G3DSA:3.20.20.80 256 635 2.0E-134 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 258 605 2.1E-117 T 11-11-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 PRINTS PR00738 Glycosyl hydrolase family 20 signature 351 368 1.0E-50 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 PRINTS PR00738 Glycosyl hydrolase family 20 signature 569 585 1.0E-50 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 PRINTS PR00738 Glycosyl hydrolase family 20 signature 587 604 1.0E-50 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 PRINTS PR00738 Glycosyl hydrolase family 20 signature 400 418 1.0E-50 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 PRINTS PR00738 Glycosyl hydrolase family 20 signature 281 302 1.0E-50 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 PRINTS PR00738 Glycosyl hydrolase family 20 signature 217 237 1.0E-50 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 PRINTS PR00738 Glycosyl hydrolase family 20 signature 252 269 1.0E-50 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS12130 e813919fe87efd7cb79f283df3fd6811 637 PRINTS PR00738 Glycosyl hydrolase family 20 signature 422 435 1.0E-50 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS10585 314d9202a1cc4589c2bfa0981378eb55 240 SUPERFAMILY SSF46894 128 232 1.76E-26 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS10585 314d9202a1cc4589c2bfa0981378eb55 240 Gene3D G3DSA:1.10.10.10 133 232 2.8E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS10585 314d9202a1cc4589c2bfa0981378eb55 240 SUPERFAMILY SSF52172 6 131 1.71E-35 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS10585 314d9202a1cc4589c2bfa0981378eb55 240 Pfam PF00072 Response regulator receiver domain 11 119 2.3E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS10585 314d9202a1cc4589c2bfa0981378eb55 240 SMART SM00862 155 231 1.0E-23 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS10585 314d9202a1cc4589c2bfa0981378eb55 240 Gene3D G3DSA:3.40.50.2300 7 131 1.4E-34 T 11-11-2016 vm_RS10585 314d9202a1cc4589c2bfa0981378eb55 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 231 4.1E-23 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS10585 314d9202a1cc4589c2bfa0981378eb55 240 SMART SM00448 9 119 1.4E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 SUPERFAMILY SSF55008 160 232 1.31E-19 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 ProSitePatterns PS01229 Hypothetical cof family signature 2. 785 807 - T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 589 595 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 299 895 3.9E-186 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 732 742 6.9E-28 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 587 601 6.9E-28 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 808 820 6.9E-28 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 435 449 6.9E-28 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 710 721 6.9E-28 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 785 804 6.9E-28 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 318 894 2.0E-186 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 Gene3D G3DSA:3.40.50.1000 559 602 2.1E-56 T 11-11-2016 IPR023214 HAD-like domain vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 Gene3D G3DSA:3.40.50.1000 713 853 2.1E-56 T 11-11-2016 IPR023214 HAD-like domain vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 SUPERFAMILY SSF81653 388 485 2.88E-23 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 ProSitePatterns PS01047 Heavy-metal-associated domain. 169 198 - T 11-11-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 Gene3D G3DSA:3.40.1110.10 603 712 1.2E-20 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 357 863 1.4E-94 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00943 Copper-transporting ATPase signature 355 374 1.4E-12 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00943 Copper-transporting ATPase signature 303 322 1.4E-12 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00943 Copper-transporting ATPase signature 858 872 1.4E-12 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00943 Copper-transporting ATPase signature 508 522 1.4E-12 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00943 Copper-transporting ATPase signature 762 779 1.4E-12 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00943 Copper-transporting ATPase signature 206 226 1.4E-12 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00943 Copper-transporting ATPase signature 819 833 1.4E-12 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 PRINTS PR00943 Copper-transporting ATPase signature 570 585 1.4E-12 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 SUPERFAMILY SSF56784 585 605 1.49E-59 T 11-11-2016 IPR023214 HAD-like domain vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 SUPERFAMILY SSF56784 643 891 1.49E-59 T 11-11-2016 IPR023214 HAD-like domain vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 Pfam PF00702 haloacid dehalogenase-like hydrolase 583 799 8.3E-46 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 Gene3D G3DSA:3.30.70.100 164 230 7.3E-24 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 Gene3D G3DSA:3.30.70.100 66 126 1.0E-7 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 SUPERFAMILY SSF55008 66 130 1.7E-6 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 SUPERFAMILY SSF81665 486 581 5.23E-11 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 SUPERFAMILY SSF81665 352 389 5.23E-11 T 11-11-2016 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 Gene3D G3DSA:2.70.150.10 331 486 1.1E-28 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 Pfam PF00403 Heavy-metal-associated domain 168 224 4.9E-13 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 vm_RS03805 2e0a3ae0a0c7bd989e10753d2e6124ca 906 Pfam PF00122 E1-E2 ATPase 356 577 9.0E-60 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 vm_RS01165 8cab535d93b68d1b888921300745e10d 207 Pfam PF00625 Guanylate kinase 5 185 1.1E-60 T 11-11-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit vm_RS01165 8cab535d93b68d1b888921300745e10d 207 Hamap MF_00328 Guanylate kinase [gmk]. 2 187 37.923 T 11-11-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 vm_RS01165 8cab535d93b68d1b888921300745e10d 207 Gene3D G3DSA:3.40.50.300 18 41 6.2E-4 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01165 8cab535d93b68d1b888921300745e10d 207 Gene3D G3DSA:3.40.50.300 88 204 1.8E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01165 8cab535d93b68d1b888921300745e10d 207 Gene3D G3DSA:3.40.50.300 2 17 1.8E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01165 8cab535d93b68d1b888921300745e10d 207 SUPERFAMILY SSF52540 3 189 3.83E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01165 8cab535d93b68d1b888921300745e10d 207 SMART SM00072 3 187 2.3E-73 T 11-11-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit vm_RS01165 8cab535d93b68d1b888921300745e10d 207 Gene3D G3DSA:3.30.63.10 42 87 9.8E-29 T 11-11-2016 vm_RS01165 8cab535d93b68d1b888921300745e10d 207 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 4 184 4.1E-76 T 11-11-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 vm_RS01165 8cab535d93b68d1b888921300745e10d 207 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 11-11-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 vm_RS13110 cf29d45c8378bb07adcbf8c19f549edc 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 1.4E-42 T 11-11-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 vm_RS13110 cf29d45c8378bb07adcbf8c19f549edc 90 SUPERFAMILY SSF111148 1 89 1.83E-41 T 11-11-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 vm_RS13110 cf29d45c8378bb07adcbf8c19f549edc 90 PIRSF PIRSF029827 1 90 1.1E-43 T 11-11-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 vm_RS13110 cf29d45c8378bb07adcbf8c19f549edc 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 28.42 T 11-11-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 vm_RS13110 cf29d45c8378bb07adcbf8c19f549edc 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 76 2.0E-39 T 11-11-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 vm_RS13110 cf29d45c8378bb07adcbf8c19f549edc 90 Gene3D G3DSA:1.10.3880.10 1 89 4.7E-45 T 11-11-2016 vm_RS00630 315d1493304faac80710963379ccb77e 205 Pfam PF01810 LysE type translocator 15 202 4.5E-35 T 11-11-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 vm_RS00630 315d1493304faac80710963379ccb77e 205 PIRSF PIRSF006324 1 205 1.4E-56 T 11-11-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 vm_RS02535 390fc160d177d0fc2b43866b0352031d 319 Gene3D G3DSA:1.10.10.10 17 101 4.9E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS02535 390fc160d177d0fc2b43866b0352031d 319 Gene3D G3DSA:3.40.190.10 287 315 1.0E-23 T 11-11-2016 vm_RS02535 390fc160d177d0fc2b43866b0352031d 319 Gene3D G3DSA:3.40.190.10 106 188 1.0E-23 T 11-11-2016 vm_RS02535 390fc160d177d0fc2b43866b0352031d 319 SUPERFAMILY SSF53850 106 309 2.71E-37 T 11-11-2016 vm_RS02535 390fc160d177d0fc2b43866b0352031d 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 51 61 1.4E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS02535 390fc160d177d0fc2b43866b0352031d 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 61 72 1.4E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS02535 390fc160d177d0fc2b43866b0352031d 319 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.4E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS02535 390fc160d177d0fc2b43866b0352031d 319 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 25 84 1.2E-18 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS02535 390fc160d177d0fc2b43866b0352031d 319 SUPERFAMILY SSF46785 22 99 2.95E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS02535 390fc160d177d0fc2b43866b0352031d 319 Pfam PF03466 LysR substrate binding domain 117 308 8.7E-22 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS02535 390fc160d177d0fc2b43866b0352031d 319 Gene3D G3DSA:3.40.190.10 189 281 3.8E-14 T 11-11-2016 vm_RS11125 b6bc8edafec86f5d3fceb3ef65fff128 439 Pfam PF07157 DNA circularisation protein N-terminus 7 92 3.9E-28 T 11-11-2016 IPR009826 DNA circulation, N-terminal vm_RS11125 b6bc8edafec86f5d3fceb3ef65fff128 439 ProDom PD332323 CIRCULATION DNA PROTEIN TAIL/DNA PHAGE PROPHAGE VIRION FLUMU BACTERIOPHAGE MU-LIKE 5 134 7.0E-58 T 11-11-2016 IPR009826 DNA circulation, N-terminal vm_RS12820 5bac4fd8790cc40ec923134d8f74f6dd 663 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 27 496 2.9E-95 T 11-11-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein vm_RS12820 5bac4fd8790cc40ec923134d8f74f6dd 663 SUPERFAMILY SSF69279 15 187 3.57E-36 T 11-11-2016 vm_RS12820 5bac4fd8790cc40ec923134d8f74f6dd 663 SUPERFAMILY SSF69255 357 444 1.2E-29 T 11-11-2016 vm_RS12820 5bac4fd8790cc40ec923134d8f74f6dd 663 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 25 511 6.0E-139 T 11-11-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset vm_RS12820 5bac4fd8790cc40ec923134d8f74f6dd 663 Gene3D G3DSA:2.40.50.230 364 444 3.6E-34 T 11-11-2016 IPR006531 Gp5 N-terminal vm_RS12820 5bac4fd8790cc40ec923134d8f74f6dd 663 SUPERFAMILY SSF69349 435 614 2.35E-26 T 11-11-2016 vm_RS12820 5bac4fd8790cc40ec923134d8f74f6dd 663 SUPERFAMILY SSF69279 204 358 4.76E-22 T 11-11-2016 vm_RS12820 5bac4fd8790cc40ec923134d8f74f6dd 663 Pfam PF05954 Phage late control gene D protein (GPD) 32 328 1.3E-51 T 11-11-2016 vm_RS12820 5bac4fd8790cc40ec923134d8f74f6dd 663 Gene3D G3DSA:3.55.50.10 100 191 1.8E-25 T 11-11-2016 vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 Pfam PF07724 AAA domain (Cdc48 subfamily) 173 329 8.2E-43 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 Gene3D G3DSA:1.10.8.10 213 243 3.0E-34 T 11-11-2016 vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 Gene3D G3DSA:1.10.8.10 111 177 3.0E-34 T 11-11-2016 vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 Gene3D G3DSA:1.10.8.60 335 443 3.7E-35 T 11-11-2016 vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 SUPERFAMILY SSF52540 3 441 1.4E-95 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 443 43.143 T 11-11-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 SMART SM01086 335 429 3.4E-19 T 11-11-2016 IPR019489 Clp ATPase, C-terminal vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 53 101 8.5E-7 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 335 404 4.6E-5 T 11-11-2016 IPR019489 Clp ATPase, C-terminal vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 SMART SM00382 49 332 1.3E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 4 443 2.7E-222 T 11-11-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 Gene3D G3DSA:3.40.50.300 245 331 4.3E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01590 12770d91f4b9bd5466a5f3416957e7cc 443 Gene3D G3DSA:3.40.50.300 3 110 4.3E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09335 b61cde9bbfe4c373f838c7e687440fa9 264 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS09335 b61cde9bbfe4c373f838c7e687440fa9 264 Pfam PF00005 ABC transporter 22 177 1.9E-23 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS09335 b61cde9bbfe4c373f838c7e687440fa9 264 SMART SM00382 31 226 6.4E-7 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS09335 b61cde9bbfe4c373f838c7e687440fa9 264 Gene3D G3DSA:3.40.50.300 1 231 8.5E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09335 b61cde9bbfe4c373f838c7e687440fa9 264 SUPERFAMILY SSF52540 2 231 1.87E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 SUPERFAMILY SSF47781 403 583 9.64E-61 T 11-11-2016 IPR010994 RuvA domain 2-like vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Gene3D G3DSA:3.40.50.10190 595 670 8.7E-22 T 11-11-2016 IPR001357 BRCT domain vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 11 664 2.5E-263 T 11-11-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Pfam PF14520 Helix-hairpin-helix domain 446 501 8.7E-6 T 11-11-2016 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 PIRSF PIRSF001604 1 670 3.6E-249 T 11-11-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 322 396 5.0E-35 T 11-11-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 SMART SM00292 595 670 1.5E-10 T 11-11-2016 IPR001357 BRCT domain vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 4 318 5.6E-131 T 11-11-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Gene3D G3DSA:3.30.470.30 119 252 5.3E-51 T 11-11-2016 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 SUPERFAMILY SSF50249 318 399 9.25E-29 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Pfam PF12826 Helix-hairpin-helix motif 510 573 1.4E-21 T 11-11-2016 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Hamap MF_01588 DNA ligase [ligA]. 2 669 52.647 T 11-11-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Gene3D G3DSA:1.10.150.20 504 584 3.3E-30 T 11-11-2016 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 SMART SM00278 544 563 110.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 SMART SM00278 446 465 41.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 SMART SM00278 512 531 350.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 SMART SM00278 480 499 16.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 331 346 - T 11-11-2016 IPR033136 NAD-dependent DNA ligase, conserved site vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 SUPERFAMILY SSF52113 596 669 4.94E-17 T 11-11-2016 IPR001357 BRCT domain vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 SUPERFAMILY SSF56091 4 316 2.16E-122 T 11-11-2016 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Gene3D G3DSA:2.40.50.140 320 391 1.3E-34 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 408 434 1.6E-9 T 11-11-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Gene3D G3DSA:1.10.150.20 435 502 1.6E-26 T 11-11-2016 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 115 144 - T 11-11-2016 IPR018239 NAD-dependent DNA ligase, active site vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Gene3D G3DSA:1.10.287.610 4 67 8.4E-27 T 11-11-2016 vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 598 667 3.3E-11 T 11-11-2016 IPR001357 BRCT domain vm_RS10275 cb74e479f2f9ce1a448c0ce2d0ac3537 670 SMART SM00532 3 448 2.7E-276 T 11-11-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 vm_RS09530 a320ed4a012d481288576eda803c7b83 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 11-11-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 vm_RS09530 a320ed4a012d481288576eda803c7b83 256 Pfam PF00455 DeoR C terminal sensor domain 75 233 3.3E-50 T 11-11-2016 IPR014036 DeoR C-terminal sensor domain vm_RS09530 a320ed4a012d481288576eda803c7b83 256 Gene3D G3DSA:1.10.10.10 1 49 6.4E-9 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09530 a320ed4a012d481288576eda803c7b83 256 SMART SM01134 73 234 7.3E-66 T 11-11-2016 vm_RS09530 a320ed4a012d481288576eda803c7b83 256 SUPERFAMILY SSF100950 74 234 1.67E-29 T 11-11-2016 vm_RS09530 a320ed4a012d481288576eda803c7b83 256 SMART SM00420 6 58 1.9E-16 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS09530 a320ed4a012d481288576eda803c7b83 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 5.2E-5 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS09530 a320ed4a012d481288576eda803c7b83 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 5.2E-5 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS09530 a320ed4a012d481288576eda803c7b83 256 Gene3D G3DSA:3.30.750.70 76 163 2.2E-12 T 11-11-2016 vm_RS09530 a320ed4a012d481288576eda803c7b83 256 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 1.3E-17 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS09530 a320ed4a012d481288576eda803c7b83 256 SUPERFAMILY SSF46785 4 62 2.03E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS00930 0efbed1fb3379cfecca0da09f73b871b 165 PIRSF PIRSF006291 3 164 6.6E-41 T 11-11-2016 IPR007690 Type II secretion system, protein M GO:0006858 vm_RS00930 0efbed1fb3379cfecca0da09f73b871b 165 SUPERFAMILY SSF103054 86 164 9.29E-23 T 11-11-2016 IPR023229 Type II secretion system protein M, periplasmic domain vm_RS00930 0efbed1fb3379cfecca0da09f73b871b 165 Pfam PF04612 Type II secretion system (T2SS), protein M 7 163 3.8E-52 T 11-11-2016 IPR007690 Type II secretion system, protein M GO:0006858 vm_RS00930 0efbed1fb3379cfecca0da09f73b871b 165 Gene3D G3DSA:3.30.1360.100 86 164 8.6E-35 T 11-11-2016 IPR023229 Type II secretion system protein M, periplasmic domain vm_RS10190 a5a5c1836eab42fea1a0a4a9d9dbc355 165 TIGRFAM TIGR01955 RfaH: transcription elongation factor/antiterminator RfaH 4 163 8.2E-73 T 11-11-2016 IPR010215 Transcription antitermination protein RfaH GO:0006355 vm_RS10190 a5a5c1836eab42fea1a0a4a9d9dbc355 165 SMART SM00738 1 101 8.7E-30 T 11-11-2016 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 vm_RS10190 a5a5c1836eab42fea1a0a4a9d9dbc355 165 Gene3D G3DSA:3.30.70.940 1 99 8.1E-20 T 11-11-2016 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 vm_RS10190 a5a5c1836eab42fea1a0a4a9d9dbc355 165 Pfam PF02357 Transcription termination factor nusG 2 91 1.7E-18 T 11-11-2016 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 vm_RS10190 a5a5c1836eab42fea1a0a4a9d9dbc355 165 Hamap MF_00951 Transcription antitermination protein RfaH [rfaH]. 1 165 47.879 T 11-11-2016 IPR010215 Transcription antitermination protein RfaH GO:0006355 vm_RS10190 a5a5c1836eab42fea1a0a4a9d9dbc355 165 SUPERFAMILY SSF82679 1 100 2.22E-28 T 11-11-2016 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 vm_RS01885 912d31cc5e11372a4db1ad92b8fca011 329 SUPERFAMILY SSF53474 22 299 5.09E-44 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS01885 912d31cc5e11372a4db1ad92b8fca011 329 Pfam PF00561 alpha/beta hydrolase fold 61 301 1.2E-22 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 vm_RS01885 912d31cc5e11372a4db1ad92b8fca011 329 PIRSF PIRSF005211 1 329 2.5E-107 T 11-11-2016 IPR012020 AB hydrolase 4 family vm_RS01885 912d31cc5e11372a4db1ad92b8fca011 329 Gene3D G3DSA:3.40.50.1820 52 301 1.1E-28 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS02400 9e8d004e4f5d70d1caa7fd52098ac4df 969 Pfam PF00271 Helicase conserved C-terminal domain 494 603 2.0E-15 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS02400 9e8d004e4f5d70d1caa7fd52098ac4df 969 SMART SM00490 519 603 1.7E-17 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS02400 9e8d004e4f5d70d1caa7fd52098ac4df 969 Pfam PF12137 RNA polymerase recycling family C-terminal 607 966 1.2E-145 T 11-11-2016 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 vm_RS02400 9e8d004e4f5d70d1caa7fd52098ac4df 969 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 1 967 71.612 T 11-11-2016 IPR023949 RNA polymerase-associated protein RapA GO:0006355 vm_RS02400 9e8d004e4f5d70d1caa7fd52098ac4df 969 Gene3D G3DSA:3.40.50.300 164 318 3.0E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02400 9e8d004e4f5d70d1caa7fd52098ac4df 969 SUPERFAMILY SSF52540 118 378 4.72E-36 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02400 9e8d004e4f5d70d1caa7fd52098ac4df 969 SMART SM00487 150 342 7.6E-14 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS02400 9e8d004e4f5d70d1caa7fd52098ac4df 969 Gene3D G3DSA:3.40.50.300 486 615 9.7E-22 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02400 9e8d004e4f5d70d1caa7fd52098ac4df 969 SUPERFAMILY SSF52540 482 647 6.89E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02400 9e8d004e4f5d70d1caa7fd52098ac4df 969 SUPERFAMILY SSF52540 273 337 6.89E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02400 9e8d004e4f5d70d1caa7fd52098ac4df 969 Pfam PF00176 SNF2 family N-terminal domain 174 344 1.9E-15 T 11-11-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 vm_RS14000 267101faa86a624a916dc7466cbebbb1 126 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 72 100 - T 11-11-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 vm_RS14000 267101faa86a624a916dc7466cbebbb1 126 PRINTS PR01650 Bacterial translocase SecE signature 45 66 1.5E-41 T 11-11-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 vm_RS14000 267101faa86a624a916dc7466cbebbb1 126 PRINTS PR01650 Bacterial translocase SecE signature 66 86 1.5E-41 T 11-11-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 vm_RS14000 267101faa86a624a916dc7466cbebbb1 126 PRINTS PR01650 Bacterial translocase SecE signature 110 126 1.5E-41 T 11-11-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 vm_RS14000 267101faa86a624a916dc7466cbebbb1 126 PRINTS PR01650 Bacterial translocase SecE signature 90 110 1.5E-41 T 11-11-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 vm_RS14000 267101faa86a624a916dc7466cbebbb1 126 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 72 122 4.3E-20 T 11-11-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 vm_RS14000 267101faa86a624a916dc7466cbebbb1 126 Hamap MF_00422 Protein translocase subunit SecE [secE]. 68 122 13.357 T 11-11-2016 IPR022943 Preprotein translocase subunit SecE Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 vm_RS14000 267101faa86a624a916dc7466cbebbb1 126 Gene3D G3DSA:1.20.5.1030 65 124 4.5E-24 T 11-11-2016 vm_RS14000 267101faa86a624a916dc7466cbebbb1 126 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 72 124 3.4E-17 T 11-11-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 SUPERFAMILY SSF52954 463 570 7.55E-34 T 11-11-2016 IPR004154 Anticodon-binding vm_RS10760 0221b229edc65bb87a6950eb67671652 571 Pfam PF03129 Anticodon binding domain 475 568 2.9E-24 T 11-11-2016 IPR004154 Anticodon-binding vm_RS10760 0221b229edc65bb87a6950eb67671652 571 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 459 6.8E-42 T 11-11-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 571 41.169 T 11-11-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 PIRSF PIRSF001535 1 571 1.6E-266 T 11-11-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 SUPERFAMILY SSF55681 407 478 3.13E-99 T 11-11-2016 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 SUPERFAMILY SSF55681 10 237 3.13E-99 T 11-11-2016 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 2.4E-16 T 11-11-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 2.4E-16 T 11-11-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 2.4E-16 T 11-11-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 2.4E-16 T 11-11-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 Gene3D G3DSA:3.90.960.10 251 388 2.9E-30 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 Gene3D G3DSA:3.30.930.10 389 471 1.4E-100 T 11-11-2016 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 Gene3D G3DSA:3.30.930.10 10 234 1.4E-100 T 11-11-2016 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 567 2.9E-248 T 11-11-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 Pfam PF04073 Aminoacyl-tRNA editing domain 257 378 8.0E-25 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 SUPERFAMILY SSF55826 218 390 6.41E-30 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 vm_RS10760 0221b229edc65bb87a6950eb67671652 571 Gene3D G3DSA:3.40.50.800 472 570 4.3E-35 T 11-11-2016 IPR004154 Anticodon-binding vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 Pfam PF14842 FliG N-terminal domain 22 121 7.9E-27 T 11-11-2016 IPR028263 Flagellar motor switch protein FliG, N-terminal domain vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 Pfam PF14841 FliG middle domain 131 203 9.6E-25 T 11-11-2016 IPR032779 Flagellar motor switch protein FliG, middle domain vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 Gene3D G3DSA:1.10.220.30 211 346 3.8E-42 T 11-11-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 SUPERFAMILY SSF48029 130 341 3.66E-67 T 11-11-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 PIRSF PIRSF003161 16 348 4.0E-112 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 SUPERFAMILY SSF48029 19 132 2.35E-19 T 11-11-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 Pfam PF01706 FliG C-terminal domain 234 340 1.8E-41 T 11-11-2016 IPR023087 Flagellar motor switch protein FliG, C-terminal vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 PRINTS PR00954 Flagellar motor switch protein FliG signature 21 37 1.3E-57 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 PRINTS PR00954 Flagellar motor switch protein FliG signature 50 76 1.3E-57 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 PRINTS PR00954 Flagellar motor switch protein FliG signature 288 314 1.3E-57 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 PRINTS PR00954 Flagellar motor switch protein FliG signature 264 284 1.3E-57 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 PRINTS PR00954 Flagellar motor switch protein FliG signature 130 153 1.3E-57 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 PRINTS PR00954 Flagellar motor switch protein FliG signature 211 236 1.3E-57 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 PRINTS PR00954 Flagellar motor switch protein FliG signature 242 262 1.3E-57 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 17 346 1.6E-94 T 11-11-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 Gene3D G3DSA:1.10.220.30 121 205 1.6E-30 T 11-11-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical vm_RS04290 d534aa62be2e115f2bc8d917ab109bda 348 Gene3D G3DSA:1.10.220.30 25 90 5.9E-15 T 11-11-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical vm_RS05895 2b51dfd10579bd6218ed0b4860aca8f3 253 Pfam PF16331 TolA binding protein trimerisation 41 113 3.5E-23 T 11-11-2016 IPR032519 YbgF, trimerisation domain GO:0070206 vm_RS05895 2b51dfd10579bd6218ed0b4860aca8f3 253 Pfam PF13432 Tetratricopeptide repeat 147 196 9.9E-6 T 11-11-2016 vm_RS05895 2b51dfd10579bd6218ed0b4860aca8f3 253 Gene3D G3DSA:1.25.40.10 138 245 1.4E-14 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS05895 2b51dfd10579bd6218ed0b4860aca8f3 253 SMART SM00028 209 242 0.057 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS05895 2b51dfd10579bd6218ed0b4860aca8f3 253 SMART SM00028 173 206 27.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS05895 2b51dfd10579bd6218ed0b4860aca8f3 253 SUPERFAMILY SSF48452 137 247 4.14E-13 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS05895 2b51dfd10579bd6218ed0b4860aca8f3 253 Pfam PF13174 Tetratricopeptide repeat 210 242 9.2E-7 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS05895 2b51dfd10579bd6218ed0b4860aca8f3 253 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 136 251 6.9E-35 T 11-11-2016 IPR014162 Tol-Pal system, YbgF vm_RS10600 0ee9525723dd8baa5846b6e870a61cbe 316 SMART SM00354 4 74 6.8E-29 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS10600 0ee9525723dd8baa5846b6e870a61cbe 316 Gene3D G3DSA:1.10.260.40 6 56 5.2E-22 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS10600 0ee9525723dd8baa5846b6e870a61cbe 316 TIGRFAM TIGR02405 trehalos_R_Ecol: trehalose operon repressor 4 305 1.1E-136 T 11-11-2016 IPR012771 Trehalose operon repressor GO:0003677|GO:0005991|GO:0045892 vm_RS10600 0ee9525723dd8baa5846b6e870a61cbe 316 SUPERFAMILY SSF53822 63 304 5.3E-60 T 11-11-2016 IPR028082 Periplasmic binding protein-like I vm_RS10600 0ee9525723dd8baa5846b6e870a61cbe 316 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 1.4E-18 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS10600 0ee9525723dd8baa5846b6e870a61cbe 316 Gene3D G3DSA:3.40.50.2300 175 278 8.1E-40 T 11-11-2016 vm_RS10600 0ee9525723dd8baa5846b6e870a61cbe 316 SUPERFAMILY SSF47413 3 60 3.7E-15 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS10600 0ee9525723dd8baa5846b6e870a61cbe 316 Pfam PF13377 Periplasmic binding protein-like domain 168 305 1.8E-21 T 11-11-2016 vm_RS10600 0ee9525723dd8baa5846b6e870a61cbe 316 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 11-11-2016 vm_RS10600 0ee9525723dd8baa5846b6e870a61cbe 316 Gene3D G3DSA:3.40.50.2300 57 174 5.2E-26 T 11-11-2016 vm_RS10880 816f06c70461a3de0b197e440853a2c6 161 Pfam PF01668 SmpB protein 14 77 3.4E-29 T 11-11-2016 IPR000037 SsrA-binding protein GO:0003723 vm_RS10880 816f06c70461a3de0b197e440853a2c6 161 ProSitePatterns PS01317 SsrA-binding protein. 33 45 - T 11-11-2016 IPR020081 SsrA-binding protein, conserved site vm_RS10880 816f06c70461a3de0b197e440853a2c6 161 TIGRFAM TIGR00086 smpB: SsrA-binding protein 15 157 2.8E-53 T 11-11-2016 IPR000037 SsrA-binding protein GO:0003723 vm_RS10880 816f06c70461a3de0b197e440853a2c6 161 SUPERFAMILY SSF74982 9 139 6.8E-49 T 11-11-2016 IPR023620 Small protein B vm_RS10880 816f06c70461a3de0b197e440853a2c6 161 Gene3D G3DSA:2.40.280.10 14 134 2.7E-48 T 11-11-2016 IPR023620 Small protein B vm_RS10880 816f06c70461a3de0b197e440853a2c6 161 Hamap MF_00023 SsrA-binding protein [smpB]. 1 161 71.106 T 11-11-2016 IPR000037 SsrA-binding protein GO:0003723 vm_RS10880 816f06c70461a3de0b197e440853a2c6 161 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 15 139 3.0E-61 T 11-11-2016 IPR000037 SsrA-binding protein GO:0003723 vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 ProSitePatterns PS00501 Signal peptidases I serine active site. 88 95 - T 11-11-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 Gene3D G3DSA:2.170.230.10 153 230 1.5E-16 T 11-11-2016 IPR019766 Peptidase S26A, all-beta subdomain vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 Pfam PF10502 Signal peptidase, peptidase S26 228 268 1.4E-6 T 11-11-2016 IPR019533 Peptidase S26 vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 ProSitePatterns PS00760 Signal peptidases I lysine active site. 145 157 - T 11-11-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 143 155 8.5E-27 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 231 250 8.5E-27 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 79 95 8.5E-27 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 ProSitePatterns PS00761 Signal peptidases I signature 3. 236 249 - T 11-11-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 SUPERFAMILY SSF51306 77 297 1.31E-69 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 65 271 2.2E-47 T 11-11-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 Gene3D G3DSA:2.10.109.10 231 272 3.6E-56 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 Gene3D G3DSA:2.10.109.10 75 152 3.6E-56 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain vm_RS02650 e3fd4710cb5cc18d81591b01989fb2a9 298 Pfam PF00717 Peptidase S24-like 85 158 2.9E-21 T 11-11-2016 IPR019759 Peptidase S24/S26A/S26B vm_RS00015 460abf6fb554145fb8fbcfc078168ae4 363 ProSitePatterns PS00618 RecF protein signature 2. 303 321 - T 11-11-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 vm_RS00015 460abf6fb554145fb8fbcfc078168ae4 363 SUPERFAMILY SSF52540 1 343 5.99E-41 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00015 460abf6fb554145fb8fbcfc078168ae4 363 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 363 96.961 T 11-11-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 vm_RS00015 460abf6fb554145fb8fbcfc078168ae4 363 Gene3D G3DSA:3.40.50.300 235 343 5.6E-38 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00015 460abf6fb554145fb8fbcfc078168ae4 363 Gene3D G3DSA:3.40.50.300 1 176 5.6E-38 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00015 460abf6fb554145fb8fbcfc078168ae4 363 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 356 5.8E-117 T 11-11-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 vm_RS00015 460abf6fb554145fb8fbcfc078168ae4 363 ProSitePatterns PS00617 RecF protein signature 1. 122 142 - T 11-11-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 vm_RS00015 460abf6fb554145fb8fbcfc078168ae4 363 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 359 1.1E-35 T 11-11-2016 IPR003395 RecF/RecN/SMC, N-terminal vm_RS04405 89b2af361287c4c4ab4d8616417a7937 381 Pfam PF11890 Domain of unknown function (DUF3410) 290 370 3.1E-27 T 11-11-2016 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181 vm_RS04405 89b2af361287c4c4ab4d8616417a7937 381 Gene3D G3DSA:3.40.50.720 116 259 9.8E-39 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04405 89b2af361287c4c4ab4d8616417a7937 381 SUPERFAMILY SSF51735 93 258 5.93E-37 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04405 89b2af361287c4c4ab4d8616417a7937 381 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 257 2.0E-35 T 11-11-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 vm_RS04405 89b2af361287c4c4ab4d8616417a7937 381 SUPERFAMILY SSF52283 3 131 1.4E-22 T 11-11-2016 vm_RS04405 89b2af361287c4c4ab4d8616417a7937 381 Gene3D G3DSA:3.40.50.720 1 115 2.2E-33 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04405 89b2af361287c4c4ab4d8616417a7937 381 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 198 214 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site vm_RS04405 89b2af361287c4c4ab4d8616417a7937 381 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 358 45.878 T 11-11-2016 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181 vm_RS04405 89b2af361287c4c4ab4d8616417a7937 381 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 4 287 9.9E-24 T 11-11-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 Gene3D G3DSA:3.40.1380.20 327 468 5.4E-44 T 11-11-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 Pfam PF00224 Pyruvate kinase, barrel domain 1 340 1.6E-154 T 11-11-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 ProSitePatterns PS00110 Pyruvate kinase active site signature. 215 227 - T 11-11-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 SUPERFAMILY SSF50800 70 167 6.11E-30 T 11-11-2016 IPR011037 Pyruvate kinase-like, insert domain vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 2 469 8.4E-188 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 SUPERFAMILY SSF51621 1 74 8.03E-102 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 SUPERFAMILY SSF51621 156 339 8.03E-102 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 Gene3D G3DSA:3.20.20.60 2 72 5.6E-117 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 Gene3D G3DSA:3.20.20.60 169 326 5.6E-117 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 PRINTS PR01050 Pyruvate kinase family signature 313 329 3.5E-80 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 PRINTS PR01050 Pyruvate kinase family signature 244 268 3.5E-80 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 PRINTS PR01050 Pyruvate kinase family signature 186 200 3.5E-80 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 PRINTS PR01050 Pyruvate kinase family signature 294 312 3.5E-80 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 PRINTS PR01050 Pyruvate kinase family signature 59 75 3.5E-80 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 PRINTS PR01050 Pyruvate kinase family signature 269 293 3.5E-80 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 PRINTS PR01050 Pyruvate kinase family signature 217 243 3.5E-80 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 Gene3D G3DSA:2.40.33.10 73 168 1.0E-33 T 11-11-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 SUPERFAMILY SSF52935 323 469 1.31E-34 T 11-11-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS12940 ef59253368fdb2571ebe9a945ee35bb2 470 Pfam PF02887 Pyruvate kinase, alpha/beta domain 356 468 1.3E-28 T 11-11-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 Pfam PF00512 His Kinase A (phospho-acceptor) domain 215 276 1.1E-10 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 SUPERFAMILY SSF55874 266 428 1.44E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 323 429 5.3E-19 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 SMART SM00387 320 430 3.6E-32 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 383 7.5E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 369 7.5E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 408 7.5E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 427 7.5E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 Gene3D G3DSA:3.30.565.10 264 431 3.0E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 Pfam PF00672 HAMP domain 143 207 1.2E-6 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 SMART SM00388 212 277 3.5E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 Gene3D G3DSA:1.10.287.130 202 263 2.5E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 SMART SM00304 159 211 0.0056 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 SUPERFAMILY SSF47384 195 277 1.8E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS08220 3e60d81ac345ba1faa77533f97a96e7f 433 SUPERFAMILY SSF158472 160 209 2.62E-5 T 11-11-2016 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 385 38.155 T 11-11-2016 IPR000158 Cell division protein FtsZ GO:0005525 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 Gene3D G3DSA:3.40.50.1440 14 214 2.5E-93 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 7 328 9.2E-136 T 11-11-2016 IPR000158 Cell division protein FtsZ GO:0005525 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 SMART SM00865 207 325 8.0E-56 T 11-11-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 PRINTS PR00423 Cell division protein FtsZ signature 126 147 5.7E-52 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 PRINTS PR00423 Cell division protein FtsZ signature 212 233 5.7E-52 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 PRINTS PR00423 Cell division protein FtsZ signature 189 211 5.7E-52 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 PRINTS PR00423 Cell division protein FtsZ signature 98 118 5.7E-52 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 11-11-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 SMART SM00864 13 205 4.9E-112 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 Gene3D G3DSA:3.30.1330.20 215 322 3.1E-47 T 11-11-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-1445148|Reactome: R-HSA-190840|Reactome: R-HSA-190861|Reactome: R-HSA-2132295|Reactome: R-HSA-2467813|Reactome: R-HSA-2500257|Reactome: R-HSA-380320|Reactome: R-HSA-437239|Reactome: R-HSA-5617833|Reactome: R-HSA-5626467|Reactome: R-HSA-5663220|Reactome: R-HSA-6807878|Reactome: R-HSA-6811434|Reactome: R-HSA-6811436|Reactome: R-HSA-68877|Reactome: R-HSA-8852276|Reactome: R-HSA-983189 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 173 1.3E-39 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 11-11-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 Pfam PF12327 FtsZ family, C-terminal domain 222 316 4.4E-36 T 11-11-2016 IPR024757 Cell division protein FtsZ, C-terminal vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 SUPERFAMILY SSF55307 204 320 8.93E-43 T 11-11-2016 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 vm_RS02995 d9279f0525ddefe166c91290f42aecf0 398 SUPERFAMILY SSF52490 13 208 3.4E-69 T 11-11-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 Gene3D G3DSA:3.40.50.300 14 177 1.2E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 SUPERFAMILY SSF63882 205 375 2.09E-49 T 11-11-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 Pfam PF00994 Probable molybdopterin binding domain 380 517 1.5E-27 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 Gene3D G3DSA:3.40.980.10 363 530 1.3E-65 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 TIGRFAM TIGR00176 mobB: molybdopterin-guanine dinucleotide biosynthesis protein B 17 172 7.1E-42 T 11-11-2016 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 SUPERFAMILY SSF52540 15 175 1.29E-24 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 Pfam PF03453 MoeA N-terminal region (domain I and II) 208 367 1.1E-34 T 11-11-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 PIRSF PIRSF036618 2 606 0.0 T 11-11-2016 IPR012182 Bifunctional molybdenum cofactor biosynthesis MobB/MoeA vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 SMART SM00852 380 517 1.3E-42 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 SUPERFAMILY SSF63867 526 604 4.06E-22 T 11-11-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 Pfam PF03454 MoeA C-terminal region (domain IV) 531 602 2.3E-20 T 11-11-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 Gene3D G3DSA:3.90.105.10 226 249 4.2E-17 T 11-11-2016 vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 Gene3D G3DSA:3.90.105.10 342 362 4.2E-17 T 11-11-2016 vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 17 149 3.5E-47 T 11-11-2016 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 SUPERFAMILY SSF53218 377 522 5.63E-45 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 377 513 2.1E-33 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 Gene3D G3DSA:2.40.340.10 531 600 1.7E-28 T 11-11-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|Reactome: R-HSA-947581 vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 453 486 - T 11-11-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 vm_RS07295 c2fe4ca5794b7cd5b05bced1ad1b0505 606 Gene3D G3DSA:2.170.190.11 250 341 5.0E-28 T 11-11-2016 vm_RS03265 91e7473e664aea972e7007309414a154 1020 Gene3D G3DSA:2.60.40.320 623 721 5.4E-23 T 11-11-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 vm_RS03265 91e7473e664aea972e7007309414a154 1020 Pfam PF00703 Glycosyl hydrolases family 2 218 331 9.0E-15 T 11-11-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 vm_RS03265 91e7473e664aea972e7007309414a154 1020 SUPERFAMILY SSF51445 332 622 1.2E-101 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS03265 91e7473e664aea972e7007309414a154 1020 Gene3D G3DSA:3.20.20.80 332 621 5.6E-112 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS03265 91e7473e664aea972e7007309414a154 1020 Pfam PF02837 Glycosyl hydrolases family 2, sugar binding domain 49 215 3.0E-54 T 11-11-2016 IPR006104 Glycosyl hydrolases family 2, sugar binding domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 vm_RS03265 91e7473e664aea972e7007309414a154 1020 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 333 626 6.1E-111 T 11-11-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 vm_RS03265 91e7473e664aea972e7007309414a154 1020 SUPERFAMILY SSF49785 9 215 3.12E-62 T 11-11-2016 IPR008979 Galactose-binding domain-like vm_RS03265 91e7473e664aea972e7007309414a154 1020 Pfam PF16353 Domain of unknown function(DUF4981) 634 719 6.9E-14 T 11-11-2016 IPR032312 Beta-galactosidase, domain 4 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 vm_RS03265 91e7473e664aea972e7007309414a154 1020 Gene3D G3DSA:2.60.120.260 9 204 2.8E-78 T 11-11-2016 IPR008979 Galactose-binding domain-like vm_RS03265 91e7473e664aea972e7007309414a154 1020 SUPERFAMILY SSF74650 731 1017 5.96E-94 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 vm_RS03265 91e7473e664aea972e7007309414a154 1020 SUPERFAMILY SSF49303 619 721 3.55E-22 T 11-11-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 vm_RS03265 91e7473e664aea972e7007309414a154 1020 SMART SM01038 744 1017 5.0E-112 T 11-11-2016 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 vm_RS03265 91e7473e664aea972e7007309414a154 1020 Pfam PF02929 Beta galactosidase small chain 748 1016 6.5E-67 T 11-11-2016 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 vm_RS03265 91e7473e664aea972e7007309414a154 1020 ProSitePatterns PS00608 Glycosyl hydrolases family 2 acid/base catalyst. 445 459 - T 11-11-2016 IPR023232 Glycoside hydrolase, family 2, active site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292 vm_RS03265 91e7473e664aea972e7007309414a154 1020 PRINTS PR00132 Glycosyl hydrolase family 2 signature 445 460 3.4E-37 T 11-11-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292 vm_RS03265 91e7473e664aea972e7007309414a154 1020 PRINTS PR00132 Glycosyl hydrolase family 2 signature 342 356 3.4E-37 T 11-11-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292 vm_RS03265 91e7473e664aea972e7007309414a154 1020 PRINTS PR00132 Glycosyl hydrolase family 2 signature 143 158 3.4E-37 T 11-11-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292 vm_RS03265 91e7473e664aea972e7007309414a154 1020 PRINTS PR00132 Glycosyl hydrolase family 2 signature 373 391 3.4E-37 T 11-11-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292 vm_RS03265 91e7473e664aea972e7007309414a154 1020 PRINTS PR00132 Glycosyl hydrolase family 2 signature 529 544 3.4E-37 T 11-11-2016 IPR006101 Glycoside hydrolase, family 2 GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292 vm_RS03265 91e7473e664aea972e7007309414a154 1020 Hamap MF_01687 Beta-galactosidase [lacZ]. 2 1019 16.573 T 11-11-2016 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase GO:0016798 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 vm_RS03265 91e7473e664aea972e7007309414a154 1020 ProSitePatterns PS00719 Glycosyl hydrolases family 2 signature 1. 383 408 - T 11-11-2016 IPR023230 Glycoside hydrolase, family 2, conserved site KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807|Reactome: R-HSA-2024096|Reactome: R-HSA-2160916|Reactome: R-HSA-2206292 vm_RS03265 91e7473e664aea972e7007309414a154 1020 SUPERFAMILY SSF49303 218 331 2.16E-22 T 11-11-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 vm_RS03265 91e7473e664aea972e7007309414a154 1020 Gene3D G3DSA:2.60.40.320 205 331 3.9E-33 T 11-11-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 vm_RS03265 91e7473e664aea972e7007309414a154 1020 Gene3D G3DSA:2.70.98.10 732 1017 7.0E-96 T 11-11-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 vm_RS06835 a2ca09e5a41954692523cfaa6b8e460f 377 SUPERFAMILY SSF50621 212 361 7.74E-23 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 vm_RS06835 a2ca09e5a41954692523cfaa6b8e460f 377 Gene3D G3DSA:2.40.37.10 236 348 1.0E-13 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 vm_RS06835 a2ca09e5a41954692523cfaa6b8e460f 377 TIGRFAM TIGR01047 nspC: carboxynorspermidine decarboxylase 6 370 1.8E-171 T 11-11-2016 IPR005730 Carboxynorspermidine decarboxylase KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 vm_RS06835 a2ca09e5a41954692523cfaa6b8e460f 377 PIRSF PIRSF038941 1 372 1.2E-130 T 11-11-2016 IPR005730 Carboxynorspermidine decarboxylase KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 vm_RS06835 a2ca09e5a41954692523cfaa6b8e460f 377 SUPERFAMILY SSF51419 14 241 3.92E-42 T 11-11-2016 IPR029066 PLP-binding barrel vm_RS06835 a2ca09e5a41954692523cfaa6b8e460f 377 Gene3D G3DSA:3.20.20.10 25 235 3.1E-17 T 11-11-2016 IPR029066 PLP-binding barrel vm_RS03770 331cde0afd24cebd2b009f3c00676026 332 SMART SM00363 7 64 3.1E-8 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS03770 331cde0afd24cebd2b009f3c00676026 332 Gene3D G3DSA:3.10.290.10 8 67 1.3E-22 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS03770 331cde0afd24cebd2b009f3c00676026 332 Pfam PF00849 RNA pseudouridylate synthase 67 193 3.2E-13 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS03770 331cde0afd24cebd2b009f3c00676026 332 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 102 116 - T 11-11-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 vm_RS03770 331cde0afd24cebd2b009f3c00676026 332 SUPERFAMILY SSF55120 66 227 2.88E-38 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS03770 331cde0afd24cebd2b009f3c00676026 332 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 71 223 2.0E-47 T 11-11-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 vm_RS03770 331cde0afd24cebd2b009f3c00676026 332 SUPERFAMILY SSF55174 3 98 9.42E-14 T 11-11-2016 vm_RS03770 331cde0afd24cebd2b009f3c00676026 332 Pfam PF01479 S4 domain 8 52 5.2E-10 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS13530 34cdaed4c700589bf93d93e4d546a040 479 SUPERFAMILY SSF53067 41 155 1.14E-14 T 11-11-2016 vm_RS13530 34cdaed4c700589bf93d93e4d546a040 479 PIRSF PIRSF028153 1 479 1.1E-217 T 11-11-2016 IPR016871 MSHA biogenesis protein, MshI vm_RS08595 59eb85a83251a8073791989778996d12 760 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 142 219 1.3E-11 T 11-11-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08595 59eb85a83251a8073791989778996d12 760 Pfam PF02867 Ribonucleotide reductase, barrel domain 663 731 1.5E-6 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08595 59eb85a83251a8073791989778996d12 760 Pfam PF02867 Ribonucleotide reductase, barrel domain 223 661 4.1E-114 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08595 59eb85a83251a8073791989778996d12 760 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 599 621 - T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08595 59eb85a83251a8073791989778996d12 760 SUPERFAMILY SSF51998 222 739 4.27E-167 T 11-11-2016 vm_RS08595 59eb85a83251a8073791989778996d12 760 Pfam PF03477 ATP cone domain 6 92 1.3E-18 T 11-11-2016 IPR005144 ATP-cone domain Reactome: R-HSA-499943 vm_RS08595 59eb85a83251a8073791989778996d12 760 SUPERFAMILY SSF48168 10 221 4.84E-74 T 11-11-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08595 59eb85a83251a8073791989778996d12 760 Gene3D G3DSA:3.20.70.20 398 559 1.1E-42 T 11-11-2016 vm_RS08595 59eb85a83251a8073791989778996d12 760 Gene3D G3DSA:3.20.70.20 610 701 1.1E-42 T 11-11-2016 vm_RS08595 59eb85a83251a8073791989778996d12 760 Gene3D G3DSA:3.20.70.20 136 344 1.1E-42 T 11-11-2016 vm_RS08595 59eb85a83251a8073791989778996d12 760 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 145 735 3.0E-175 T 11-11-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08595 59eb85a83251a8073791989778996d12 760 PRINTS PR01183 Ribonucleotide reductase large chain signature 539 562 3.4E-37 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08595 59eb85a83251a8073791989778996d12 760 PRINTS PR01183 Ribonucleotide reductase large chain signature 298 317 3.4E-37 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08595 59eb85a83251a8073791989778996d12 760 PRINTS PR01183 Ribonucleotide reductase large chain signature 610 637 3.4E-37 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08595 59eb85a83251a8073791989778996d12 760 PRINTS PR01183 Ribonucleotide reductase large chain signature 433 444 3.4E-37 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08595 59eb85a83251a8073791989778996d12 760 PRINTS PR01183 Ribonucleotide reductase large chain signature 473 496 3.4E-37 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08595 59eb85a83251a8073791989778996d12 760 PRINTS PR01183 Ribonucleotide reductase large chain signature 511 533 3.4E-37 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08155 ec364c937dcc7b1e747797cae0dba7fe 1036 SUPERFAMILY SSF109604 892 991 1.35E-7 T 11-11-2016 vm_RS08155 ec364c937dcc7b1e747797cae0dba7fe 1036 SUPERFAMILY SSF53850 293 499 6.95E-22 T 11-11-2016 vm_RS08155 ec364c937dcc7b1e747797cae0dba7fe 1036 SMART SM00471 664 974 4.4E-4 T 11-11-2016 IPR003607 HD/PDEase domain vm_RS08155 ec364c937dcc7b1e747797cae0dba7fe 1036 Gene3D G3DSA:1.10.3210.10 654 736 2.3E-5 T 11-11-2016 IPR006674 HD domain vm_RS08155 ec364c937dcc7b1e747797cae0dba7fe 1036 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 295 500 9.0E-18 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS08155 ec364c937dcc7b1e747797cae0dba7fe 1036 SUPERFAMILY SSF109604 660 742 6.6E-8 T 11-11-2016 vm_RS08155 ec364c937dcc7b1e747797cae0dba7fe 1036 Pfam PF13487 HD domain 891 956 2.7E-19 T 11-11-2016 vm_RS08155 ec364c937dcc7b1e747797cae0dba7fe 1036 Gene3D G3DSA:3.30.450.20 168 225 5.8E-11 T 11-11-2016 vm_RS08155 ec364c937dcc7b1e747797cae0dba7fe 1036 Gene3D G3DSA:3.30.450.20 85 122 5.8E-11 T 11-11-2016 vm_RS08155 ec364c937dcc7b1e747797cae0dba7fe 1036 Gene3D G3DSA:3.40.190.10 293 377 4.6E-13 T 11-11-2016 vm_RS08155 ec364c937dcc7b1e747797cae0dba7fe 1036 Gene3D G3DSA:3.40.190.10 462 500 4.6E-13 T 11-11-2016 vm_RS08155 ec364c937dcc7b1e747797cae0dba7fe 1036 SMART SM00062 294 502 7.1E-7 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS01895 b9e1c60b850c1c2b4c7882a4454e9c6d 638 SUPERFAMILY SSF52540 119 255 6.56E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01895 b9e1c60b850c1c2b4c7882a4454e9c6d 638 SUPERFAMILY SSF52540 2 92 6.56E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01895 b9e1c60b850c1c2b4c7882a4454e9c6d 638 SUPERFAMILY SSF52540 277 494 2.39E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01895 b9e1c60b850c1c2b4c7882a4454e9c6d 638 Pfam PF00005 ABC transporter 328 459 4.8E-25 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS01895 b9e1c60b850c1c2b4c7882a4454e9c6d 638 Pfam PF00005 ABC transporter 17 178 5.1E-20 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS01895 b9e1c60b850c1c2b4c7882a4454e9c6d 638 Gene3D G3DSA:3.40.50.300 310 534 1.3E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01895 b9e1c60b850c1c2b4c7882a4454e9c6d 638 Pfam PF12848 ABC transporter 217 294 2.9E-28 T 11-11-2016 IPR032781 ABC-transporter extension domain vm_RS01895 b9e1c60b850c1c2b4c7882a4454e9c6d 638 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS01895 b9e1c60b850c1c2b4c7882a4454e9c6d 638 SMART SM00382 26 223 2.7E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS01895 b9e1c60b850c1c2b4c7882a4454e9c6d 638 SMART SM00382 337 503 4.7E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS01895 b9e1c60b850c1c2b4c7882a4454e9c6d 638 Gene3D G3DSA:3.40.50.300 2 274 8.9E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01895 b9e1c60b850c1c2b4c7882a4454e9c6d 638 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS08390 9d5c693663de9bfca3f9dee3e7625d58 338 Gene3D G3DSA:3.40.50.2300 58 166 5.0E-44 T 11-11-2016 vm_RS08390 9d5c693663de9bfca3f9dee3e7625d58 338 Gene3D G3DSA:3.40.50.2300 167 326 3.4E-50 T 11-11-2016 vm_RS08390 9d5c693663de9bfca3f9dee3e7625d58 338 Gene3D G3DSA:1.10.260.40 3 57 7.2E-24 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS08390 9d5c693663de9bfca3f9dee3e7625d58 338 SUPERFAMILY SSF53822 61 320 2.78E-68 T 11-11-2016 IPR028082 Periplasmic binding protein-like I vm_RS08390 9d5c693663de9bfca3f9dee3e7625d58 338 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 3.5E-5 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS08390 9d5c693663de9bfca3f9dee3e7625d58 338 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 3.5E-5 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS08390 9d5c693663de9bfca3f9dee3e7625d58 338 SUPERFAMILY SSF47413 2 59 2.28E-16 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS08390 9d5c693663de9bfca3f9dee3e7625d58 338 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 48 6.4E-18 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS08390 9d5c693663de9bfca3f9dee3e7625d58 338 Pfam PF13377 Periplasmic binding protein-like domain 168 325 1.4E-29 T 11-11-2016 vm_RS08390 9d5c693663de9bfca3f9dee3e7625d58 338 SMART SM00354 1 71 6.2E-28 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 Pfam PF00679 Elongation factor G C-terminus 605 692 6.6E-31 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 Gene3D G3DSA:2.40.30.10 310 410 2.1E-37 T 11-11-2016 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 Gene3D G3DSA:3.40.50.300 6 293 7.1E-105 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 Pfam PF00009 Elongation factor Tu GTP binding domain 9 288 3.5E-67 T 11-11-2016 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 Gene3D G3DSA:3.30.70.240 605 691 2.8E-33 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 Pfam PF14492 Elongation Factor G, domain II 409 483 6.0E-34 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 PRINTS PR00315 GTP-binding elongation factor signature 101 112 9.4E-17 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 PRINTS PR00315 GTP-binding elongation factor signature 12 25 9.4E-17 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 PRINTS PR00315 GTP-binding elongation factor signature 85 95 9.4E-17 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 PRINTS PR00315 GTP-binding elongation factor signature 137 146 9.4E-17 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 PRINTS PR00315 GTP-binding elongation factor signature 58 66 9.4E-17 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 Hamap MF_00054_B Elongation factor G [fusA]. 6 697 110.767 T 11-11-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 Gene3D G3DSA:3.30.70.870 411 485 6.3E-39 T 11-11-2016 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 SUPERFAMILY SSF52540 6 288 1.84E-106 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 Pfam PF03144 Elongation factor Tu domain 2 329 396 5.4E-17 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 SUPERFAMILY SSF54980 608 695 5.28E-30 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 187 3.6E-36 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 SUPERFAMILY SSF54980 407 485 3.24E-25 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 SMART SM00889 485 603 1.2E-73 T 11-11-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 SUPERFAMILY SSF50447 271 409 4.64E-35 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 Pfam PF03764 Elongation factor G, domain IV 484 603 8.6E-48 T 11-11-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 TIGRFAM TIGR00484 EF-G: translation elongation factor G 2 697 0.0 T 11-11-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 SUPERFAMILY SSF54211 484 604 1.8E-46 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 Gene3D G3DSA:3.30.230.10 489 604 6.7E-52 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS13760 8d73d6a57916d780c20e50307cf44f8b 698 SMART SM00838 605 693 4.4E-59 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS01635 74a40f952416460bdb21f9e227279f2f 96 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 4.2E-31 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 vm_RS01635 74a40f952416460bdb21f9e227279f2f 96 Gene3D G3DSA:2.30.33.40 1 96 1.0E-33 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 vm_RS01635 74a40f952416460bdb21f9e227279f2f 96 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 24.495 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 vm_RS01635 74a40f952416460bdb21f9e227279f2f 96 SUPERFAMILY SSF50129 1 96 1.06E-31 T 11-11-2016 IPR011032 GroES-like vm_RS01635 74a40f952416460bdb21f9e227279f2f 96 SMART SM00883 2 95 4.7E-50 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 vm_RS01635 74a40f952416460bdb21f9e227279f2f 96 PRINTS PR00297 10kDa chaperonin signature 25 46 1.6E-27 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 vm_RS01635 74a40f952416460bdb21f9e227279f2f 96 PRINTS PR00297 10kDa chaperonin signature 3 18 1.6E-27 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 vm_RS01635 74a40f952416460bdb21f9e227279f2f 96 PRINTS PR00297 10kDa chaperonin signature 82 95 1.6E-27 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 vm_RS01635 74a40f952416460bdb21f9e227279f2f 96 PRINTS PR00297 10kDa chaperonin signature 60 72 1.6E-27 T 11-11-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 vm_RS01635 74a40f952416460bdb21f9e227279f2f 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 11-11-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 vm_RS03925 72c00f50443af8dc13fe493931917bca 379 PRINTS PR00207 Flagellin signature 76 95 2.4E-25 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS03925 72c00f50443af8dc13fe493931917bca 379 PRINTS PR00207 Flagellin signature 111 134 2.4E-25 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS03925 72c00f50443af8dc13fe493931917bca 379 PRINTS PR00207 Flagellin signature 37 54 2.4E-25 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS03925 72c00f50443af8dc13fe493931917bca 379 SUPERFAMILY SSF64518 1 379 3.14E-99 T 11-11-2016 vm_RS03925 72c00f50443af8dc13fe493931917bca 379 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 5.1E-43 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS03925 72c00f50443af8dc13fe493931917bca 379 Gene3D G3DSA:1.20.1330.10 54 171 5.9E-60 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS03925 72c00f50443af8dc13fe493931917bca 379 Gene3D G3DSA:1.20.1330.10 281 334 5.9E-60 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS03925 72c00f50443af8dc13fe493931917bca 379 Pfam PF07196 Flagellin hook IN motif 197 246 8.3E-8 T 11-11-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 vm_RS03925 72c00f50443af8dc13fe493931917bca 379 Pfam PF00700 Bacterial flagellin C-terminal helical region 294 378 2.4E-26 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS06160 6014d54d6f7e5348c13419558b44f940 405 SUPERFAMILY SSF52540 155 389 1.13E-27 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06160 6014d54d6f7e5348c13419558b44f940 405 Gene3D G3DSA:3.40.50.300 155 388 7.6E-38 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06160 6014d54d6f7e5348c13419558b44f940 405 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 156 353 3.1E-9 T 11-11-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain vm_RS14885 fa963e1ab804f2b99651ca890b39b0fe 631 Gene3D G3DSA:3.50.50.60 7 234 2.2E-53 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS14885 fa963e1ab804f2b99651ca890b39b0fe 631 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 622 2.5E-292 T 11-11-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 vm_RS14885 fa963e1ab804f2b99651ca890b39b0fe 631 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 624 42.461 T 11-11-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 vm_RS14885 fa963e1ab804f2b99651ca890b39b0fe 631 SUPERFAMILY SSF51905 97 261 6.04E-51 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS14885 fa963e1ab804f2b99651ca890b39b0fe 631 SUPERFAMILY SSF51905 6 66 6.04E-51 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS14885 fa963e1ab804f2b99651ca890b39b0fe 631 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 11-11-2016 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 vm_RS14885 fa963e1ab804f2b99651ca890b39b0fe 631 Pfam PF01134 Glucose inhibited division protein A 8 399 5.9E-170 T 11-11-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 vm_RS14885 fa963e1ab804f2b99651ca890b39b0fe 631 Pfam PF13932 GidA associated domain 403 616 3.3E-71 T 11-11-2016 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 vm_RS14885 fa963e1ab804f2b99651ca890b39b0fe 631 SMART SM01228 546 617 1.1E-41 T 11-11-2016 vm_RS14885 fa963e1ab804f2b99651ca890b39b0fe 631 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 11-11-2016 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 vm_RS14560 d56a21bda5d388e412f7db3995b79e52 699 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 61 698 1.4E-104 T 11-11-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 vm_RS14560 d56a21bda5d388e412f7db3995b79e52 699 Gene3D G3DSA:2.170.130.10 36 169 2.2E-36 T 11-11-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 vm_RS14560 d56a21bda5d388e412f7db3995b79e52 699 Pfam PF00593 TonB dependent receptor 468 698 2.2E-29 T 11-11-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 vm_RS14560 d56a21bda5d388e412f7db3995b79e52 699 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 51 - T 11-11-2016 IPR010916 TonB box, conserved site vm_RS14560 d56a21bda5d388e412f7db3995b79e52 699 SUPERFAMILY SSF56935 36 699 4.97E-128 T 11-11-2016 vm_RS14560 d56a21bda5d388e412f7db3995b79e52 699 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 159 2.4E-17 T 11-11-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 vm_RS14560 d56a21bda5d388e412f7db3995b79e52 699 Gene3D G3DSA:2.40.170.20 172 699 3.8E-140 T 11-11-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 vm_RS13705 af52882fb43d1f0650de1d4ded661305 139 TIGRFAM TIGR00149 TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme 12 139 2.1E-47 T 11-11-2016 IPR001602 Uncharacterised protein family UPF0047 vm_RS13705 af52882fb43d1f0650de1d4ded661305 139 ProSitePatterns PS01314 Uncharacterized protein family UPF0047 signature. 100 118 - T 11-11-2016 IPR001602 Uncharacterised protein family UPF0047 vm_RS13705 af52882fb43d1f0650de1d4ded661305 139 SUPERFAMILY SSF111038 1 139 3.01E-51 T 11-11-2016 IPR001602 Uncharacterised protein family UPF0047 vm_RS13705 af52882fb43d1f0650de1d4ded661305 139 Pfam PF01894 Uncharacterised protein family UPF0047 19 135 4.5E-39 T 11-11-2016 IPR001602 Uncharacterised protein family UPF0047 vm_RS13705 af52882fb43d1f0650de1d4ded661305 139 PIRSF PIRSF004681 1 139 2.6E-47 T 11-11-2016 IPR001602 Uncharacterised protein family UPF0047 vm_RS13705 af52882fb43d1f0650de1d4ded661305 139 Gene3D G3DSA:2.60.120.460 1 139 4.7E-59 T 11-11-2016 IPR001602 Uncharacterised protein family UPF0047 vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 Gene3D G3DSA:2.40.30.10 209 298 2.3E-34 T 11-11-2016 vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 2.9E-33 T 11-11-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 SUPERFAMILY SSF50465 298 393 3.17E-35 T 11-11-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 Gene3D G3DSA:2.40.30.10 300 393 9.1E-47 T 11-11-2016 vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 3.9E-17 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 59.756 T 11-11-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 Gene3D G3DSA:3.40.50.300 3 208 1.2E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 SUPERFAMILY SSF50447 205 301 2.75E-29 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.5E-24 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 3.5E-24 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.5E-24 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 3.5E-24 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 3.5E-24 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 SUPERFAMILY SSF52540 6 219 1.61E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 2.2E-58 T 11-11-2016 vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 393 4.2E-233 T 11-11-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS14005 3001b614a4fd7b8fd2b41a5c7118ec87 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.2E-13 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS04595 703e0e649cbdccf4b2523ba271007632 493 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 2 368 4.3E-86 T 11-11-2016 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 vm_RS04595 703e0e649cbdccf4b2523ba271007632 493 Pfam PF00448 SRP54-type protein, GTPase domain 282 470 1.8E-38 T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS04595 703e0e649cbdccf4b2523ba271007632 493 Gene3D G3DSA:3.40.50.300 279 470 1.8E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04595 703e0e649cbdccf4b2523ba271007632 493 SMART SM00382 279 417 6.1E-7 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS04595 703e0e649cbdccf4b2523ba271007632 493 SUPERFAMILY SSF52540 277 468 8.24E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04595 703e0e649cbdccf4b2523ba271007632 493 SMART SM00962 280 473 3.0E-64 T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS14485 0fba36efdd0fee09e7c6feaed8c78c25 399 Pfam PF02441 Flavoprotein 7 135 3.9E-32 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 vm_RS14485 0fba36efdd0fee09e7c6feaed8c78c25 399 SUPERFAMILY SSF52507 1 180 6.54E-61 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 vm_RS14485 0fba36efdd0fee09e7c6feaed8c78c25 399 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 187 370 1.3E-75 T 11-11-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 vm_RS14485 0fba36efdd0fee09e7c6feaed8c78c25 399 Gene3D G3DSA:3.40.50.1950 2 186 2.5E-65 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 vm_RS14485 0fba36efdd0fee09e7c6feaed8c78c25 399 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 4 395 1.4E-152 T 11-11-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5 vm_RS14485 0fba36efdd0fee09e7c6feaed8c78c25 399 Gene3D G3DSA:3.40.50.10300 187 398 4.0E-90 T 11-11-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 vm_RS14485 0fba36efdd0fee09e7c6feaed8c78c25 399 SUPERFAMILY SSF102645 184 397 3.27E-81 T 11-11-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 vm_RS01610 c587bf10be8872949280a489cd0c4b9c 257 Pfam PF00121 Triosephosphate isomerase 5 247 1.9E-87 T 11-11-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS01610 c587bf10be8872949280a489cd0c4b9c 257 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 241 2.4E-79 T 11-11-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS01610 c587bf10be8872949280a489cd0c4b9c 257 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 251 39.58 T 11-11-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS01610 c587bf10be8872949280a489cd0c4b9c 257 ProSitePatterns PS00171 Triosephosphate isomerase active site. 167 177 - T 11-11-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS01610 c587bf10be8872949280a489cd0c4b9c 257 SUPERFAMILY SSF51351 2 251 1.83E-89 T 11-11-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS01610 c587bf10be8872949280a489cd0c4b9c 257 Gene3D G3DSA:3.20.20.70 1 253 1.7E-99 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS06435 919956cefd035d880aefb2c85d1ad010 139 Pfam PF03061 Thioesterase superfamily 26 98 5.7E-20 T 11-11-2016 IPR006683 Thioesterase domain Reactome: R-HSA-75105 vm_RS06435 919956cefd035d880aefb2c85d1ad010 139 SUPERFAMILY SSF54637 9 129 3.95E-38 T 11-11-2016 IPR029069 HotDog domain vm_RS06435 919956cefd035d880aefb2c85d1ad010 139 Gene3D G3DSA:3.10.129.10 4 129 9.6E-42 T 11-11-2016 IPR029069 HotDog domain vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 208 235 1.2E-77 T 11-11-2016 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 30 57 1.2E-77 T 11-11-2016 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 182 205 1.2E-77 T 11-11-2016 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 67 93 1.2E-77 T 11-11-2016 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 307 332 1.2E-77 T 11-11-2016 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 151 174 1.2E-77 T 11-11-2016 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 PIRSF PIRSF500210 1 335 1.5E-128 T 11-11-2016 IPR028343 Fructose-1,6-bisphosphatase GO:0006001|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 Gene3D G3DSA:3.30.540.10 5 198 7.5E-80 T 11-11-2016 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 ProSitePatterns PS00124 Fructose-1-6-bisphosphatase active site. 273 285 - T 11-11-2016 IPR020548 Fructose-1,6-bisphosphatase, active site GO:0005975|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 PIRSF PIRSF000904 1 335 2.5E-125 T 11-11-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 SUPERFAMILY SSF56655 2 331 1.2E-114 T 11-11-2016 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 5 333 43.38 T 11-11-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0016791 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 6 197 1.1E-77 T 11-11-2016 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: R-HSA-70263 vm_RS02215 3ae5a3c641e486a2480a28862842fd79 336 Gene3D G3DSA:3.40.190.80 199 332 3.9E-60 T 11-11-2016 vm_RS14430 d7fbfa319e680ef02857079834842f24 236 Gene3D G3DSA:1.10.510.10 145 224 2.3E-14 T 11-11-2016 vm_RS14430 d7fbfa319e680ef02857079834842f24 236 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 30 232 3.1E-67 T 11-11-2016 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 Reactome: R-HSA-6782315|Reactome: R-HSA-6804756 vm_RS14430 d7fbfa319e680ef02857079834842f24 236 Hamap MF_00521 3-deoxy-D-manno-octulosonic acid kinase [kdkA]. 2 234 43.858 T 11-11-2016 IPR022826 3-deoxy-D-manno-octulosonic acid kinase GO:0016773 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.1.166|MetaCyc: PWY-7675|MetaCyc: PWY-7676 vm_RS14430 d7fbfa319e680ef02857079834842f24 236 SUPERFAMILY SSF56112 38 194 5.26E-18 T 11-11-2016 IPR011009 Protein kinase-like domain vm_RS07950 f30791bf123b165f8a97fcb3463478f2 176 SUPERFAMILY SSF53098 3 175 1.77E-28 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS07950 f30791bf123b165f8a97fcb3463478f2 176 Gene3D G3DSA:3.30.420.10 2 176 2.8E-39 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS07950 f30791bf123b165f8a97fcb3463478f2 176 SMART SM00479 5 176 7.1E-4 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS07950 f30791bf123b165f8a97fcb3463478f2 176 Pfam PF00929 Exonuclease 7 171 1.7E-11 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS04025 d0843afe5f8d3aa50e9e6f768833396c 314 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 3.5E-50 T 11-11-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 vm_RS04025 d0843afe5f8d3aa50e9e6f768833396c 314 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 314 4.7E-125 T 11-11-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 vm_RS04025 d0843afe5f8d3aa50e9e6f768833396c 314 Gene3D G3DSA:3.40.50.2020 160 286 2.2E-53 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS04025 d0843afe5f8d3aa50e9e6f768833396c 314 Pfam PF14572 Phosphoribosyl synthetase-associated domain 204 313 1.0E-30 T 11-11-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 vm_RS04025 d0843afe5f8d3aa50e9e6f768833396c 314 SMART SM01400 4 121 1.6E-76 T 11-11-2016 vm_RS04025 d0843afe5f8d3aa50e9e6f768833396c 314 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 11-11-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 vm_RS04025 d0843afe5f8d3aa50e9e6f768833396c 314 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 4 314 49.577 T 11-11-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 vm_RS04025 d0843afe5f8d3aa50e9e6f768833396c 314 Gene3D G3DSA:3.40.50.2020 2 159 2.2E-73 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS04025 d0843afe5f8d3aa50e9e6f768833396c 314 SUPERFAMILY SSF53271 69 306 7.32E-67 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS01430 4f93e5e52b7d40e18423b356cac48d57 358 Pfam PF05954 Phage late control gene D protein (GPD) 27 291 5.1E-14 T 11-11-2016 vm_RS01430 4f93e5e52b7d40e18423b356cac48d57 358 SUPERFAMILY SSF69279 182 347 1.02E-46 T 11-11-2016 vm_RS01430 4f93e5e52b7d40e18423b356cac48d57 358 Gene3D G3DSA:2.30.300.10 281 353 1.6E-65 T 11-11-2016 vm_RS01430 4f93e5e52b7d40e18423b356cac48d57 358 Gene3D G3DSA:2.30.300.10 2 107 1.6E-65 T 11-11-2016 vm_RS01430 4f93e5e52b7d40e18423b356cac48d57 358 Gene3D G3DSA:3.55.50.10 108 180 1.6E-32 T 11-11-2016 vm_RS01430 4f93e5e52b7d40e18423b356cac48d57 358 SUPERFAMILY SSF69279 3 180 2.08E-56 T 11-11-2016 vm_RS01430 4f93e5e52b7d40e18423b356cac48d57 358 Gene3D G3DSA:3.30.1920.10 204 279 3.2E-27 T 11-11-2016 IPR023399 Baseplate-like protein, two-layer sandwich domain vm_RS01430 4f93e5e52b7d40e18423b356cac48d57 358 PIRSF PIRSF004440 1 355 7.3E-96 T 11-11-2016 IPR026276 Baseplate protein GpP vm_RS18650 976958cb6e82bd136b6bc9147f6614a6 44 SUPERFAMILY SSF55120 7 43 9.44E-9 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS04890 572515249c69effc539c562535b64e04 324 SUPERFAMILY SSF52540 9 191 7.23E-41 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04890 572515249c69effc539c562535b64e04 324 Pfam PF13177 DNA polymerase III, delta subunit 21 167 2.2E-44 T 11-11-2016 vm_RS04890 572515249c69effc539c562535b64e04 324 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 18 200 1.0E-62 T 11-11-2016 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS04890 572515249c69effc539c562535b64e04 324 SUPERFAMILY SSF48019 210 322 3.74E-22 T 11-11-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 vm_RS04890 572515249c69effc539c562535b64e04 324 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 211 317 5.1E-19 T 11-11-2016 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS04890 572515249c69effc539c562535b64e04 324 Gene3D G3DSA:1.20.272.10 210 320 2.7E-29 T 11-11-2016 vm_RS04890 572515249c69effc539c562535b64e04 324 Gene3D G3DSA:3.40.50.300 17 167 5.5E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14880 10d3054087cc6103445cbf5b69fd01db 210 Pfam PF02527 rRNA small subunit methyltransferase G 23 204 9.0E-63 T 11-11-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 vm_RS14880 10d3054087cc6103445cbf5b69fd01db 210 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 16 205 28.123 T 11-11-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 vm_RS14880 10d3054087cc6103445cbf5b69fd01db 210 SUPERFAMILY SSF53335 11 208 2.3E-39 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS14880 10d3054087cc6103445cbf5b69fd01db 210 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 29 207 1.3E-57 T 11-11-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 vm_RS14880 10d3054087cc6103445cbf5b69fd01db 210 Gene3D G3DSA:3.40.50.150 8 208 1.9E-68 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS14880 10d3054087cc6103445cbf5b69fd01db 210 PIRSF PIRSF003078 4 209 1.3E-59 T 11-11-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 vm_RS08340 f4db279baccc4e3d1437697f68b646cf 466 Gene3D G3DSA:3.30.930.10 109 462 7.8E-113 T 11-11-2016 vm_RS08340 f4db279baccc4e3d1437697f68b646cf 466 SUPERFAMILY SSF55681 104 464 3.78E-95 T 11-11-2016 vm_RS08340 f4db279baccc4e3d1437697f68b646cf 466 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 5 466 6.7E-205 T 11-11-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 vm_RS08340 f4db279baccc4e3d1437697f68b646cf 466 SUPERFAMILY SSF50249 15 102 9.52E-17 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS08340 f4db279baccc4e3d1437697f68b646cf 466 Pfam PF01336 OB-fold nucleic acid binding domain 20 99 2.2E-10 T 11-11-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 vm_RS08340 f4db279baccc4e3d1437697f68b646cf 466 Gene3D G3DSA:2.40.50.140 15 103 5.7E-16 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS08340 f4db279baccc4e3d1437697f68b646cf 466 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 6 466 45.826 T 11-11-2016 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 vm_RS08340 f4db279baccc4e3d1437697f68b646cf 466 Pfam PF00152 tRNA synthetases class II (D, K and N) 119 460 1.9E-80 T 11-11-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS08340 f4db279baccc4e3d1437697f68b646cf 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 421 435 2.3E-14 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS08340 f4db279baccc4e3d1437697f68b646cf 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 381 397 2.3E-14 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS08340 f4db279baccc4e3d1437697f68b646cf 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 208 220 2.3E-14 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS08340 f4db279baccc4e3d1437697f68b646cf 466 PRINTS PR01042 Aspartyl-tRNA synthetase signature 224 237 2.3E-14 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS05160 0f0405ca4107a973733472fd0c67fc53 87 Pfam PF03776 Septum formation topological specificity factor MinE 14 83 1.7E-23 T 11-11-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 vm_RS05160 0f0405ca4107a973733472fd0c67fc53 87 Gene3D G3DSA:3.30.1070.10 33 86 1.1E-21 T 11-11-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 vm_RS05160 0f0405ca4107a973733472fd0c67fc53 87 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 87 18.884 T 11-11-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 vm_RS05160 0f0405ca4107a973733472fd0c67fc53 87 SUPERFAMILY SSF55229 33 85 1.7E-16 T 11-11-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 vm_RS05160 0f0405ca4107a973733472fd0c67fc53 87 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 84 1.6E-34 T 11-11-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 vm_RS11115 5295d077c0810281e0768260b95285a8 114 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 5 101 5.5E-16 T 11-11-2016 IPR019289 Bacteriophage tail protein Gp41, putative vm_RS01415 5295d077c0810281e0768260b95285a8 114 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 5 101 5.5E-16 T 11-11-2016 IPR019289 Bacteriophage tail protein Gp41, putative vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 Pfam PF02914 Bacteriophage Mu transposase 261 474 5.3E-109 T 11-11-2016 IPR004189 Bacteriophage Mu, transposase GO:0003677|GO:0004803|GO:0006313|GO:0015074 vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 ProDom PD223702 DNA TRANSPOSASE DNA-BINDING TRANSPOSABLE INTEGRATION ELEMENT RECOMBINATION TRANSPOSASE EXCISION TRANSPOSITION 267 481 2.0E-98 T 11-11-2016 vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 Pfam PF09039 Mu DNA binding, I gamma subdomain 148 258 1.3E-40 T 11-11-2016 IPR015126 Mu DNA binding, I gamma subdomain vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 Gene3D G3DSA:1.10.10.60 77 169 1.4E-34 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 Gene3D G3DSA:2.30.30.130 494 561 2.8E-24 T 11-11-2016 IPR009004 Transposase, Mu, C-terminal vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 SUPERFAMILY SSF46955 1 70 2.84E-9 T 11-11-2016 IPR009061 Putative DNA-binding domain vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 SUPERFAMILY SSF53098 262 481 1.8E-73 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 SUPERFAMILY SSF46689 177 249 1.51E-24 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 Gene3D G3DSA:1.10.10.60 177 248 2.3E-30 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 Gene3D G3DSA:1.10.10.10 1 72 4.5E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 Pfam PF09299 Mu transposase, C-terminal 489 558 4.6E-14 T 11-11-2016 IPR015378 Transposase-like, Mu, C-terminal vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 Gene3D G3DSA:3.30.420.10 251 488 2.2E-81 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 SUPERFAMILY SSF46689 73 169 1.19E-29 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS01195 59d74d949675f0e9928a37fd328ff712 667 SUPERFAMILY SSF50610 484 561 6.02E-20 T 11-11-2016 IPR009004 Transposase, Mu, C-terminal vm_RS12245 62dca7a4493083b07593f6804a773cea 222 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 11-11-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 vm_RS12245 62dca7a4493083b07593f6804a773cea 222 SUPERFAMILY SSF53056 2 211 1.07E-74 T 11-11-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 vm_RS12245 62dca7a4493083b07593f6804a773cea 222 Pfam PF00484 Carbonic anhydrase 38 188 8.2E-50 T 11-11-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 vm_RS12245 62dca7a4493083b07593f6804a773cea 222 SMART SM00947 30 192 2.6E-66 T 11-11-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 vm_RS12245 62dca7a4493083b07593f6804a773cea 222 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 42 49 - T 11-11-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 vm_RS12245 62dca7a4493083b07593f6804a773cea 222 Gene3D G3DSA:3.40.1050.10 1 211 9.1E-79 T 11-11-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 vm_RS06695 060daed5dcbdf6173161c5517b0db218 588 Pfam PF12793 Sugar transport-related sRNA regulator N-term 6 119 1.3E-31 T 11-11-2016 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain vm_RS06695 060daed5dcbdf6173161c5517b0db218 588 Gene3D G3DSA:3.90.76.10 134 285 4.0E-23 T 11-11-2016 vm_RS06695 060daed5dcbdf6173161c5517b0db218 588 SUPERFAMILY SSF53850 123 586 6.05E-59 T 11-11-2016 vm_RS06695 060daed5dcbdf6173161c5517b0db218 588 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 163 318 3.2E-19 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain vm_RS03145 f357f5ac4872af0ce0c36eb01a8f1d33 284 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 71 79 - T 11-11-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 vm_RS03145 f357f5ac4872af0ce0c36eb01a8f1d33 284 Gene3D G3DSA:3.20.20.150 4 282 1.5E-119 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain vm_RS03145 f357f5ac4872af0ce0c36eb01a8f1d33 284 Pfam PF01261 Xylose isomerase-like TIM barrel 23 241 1.4E-41 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain vm_RS03145 f357f5ac4872af0ce0c36eb01a8f1d33 284 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 217 233 - T 11-11-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 vm_RS03145 f357f5ac4872af0ce0c36eb01a8f1d33 284 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 177 184 - T 11-11-2016 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 vm_RS03145 f357f5ac4872af0ce0c36eb01a8f1d33 284 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 4 279 5.6E-106 T 11-11-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 vm_RS03145 f357f5ac4872af0ce0c36eb01a8f1d33 284 SUPERFAMILY SSF51658 5 280 4.32E-99 T 11-11-2016 IPR013022 Xylose isomerase-like, TIM barrel domain vm_RS03145 f357f5ac4872af0ce0c36eb01a8f1d33 284 Hamap MF_00152 Probable endonuclease 4 [nfo]. 4 281 42.219 T 11-11-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 vm_RS03145 f357f5ac4872af0ce0c36eb01a8f1d33 284 SMART SM00518 5 281 3.5E-120 T 11-11-2016 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 vm_RS11950 ecf191c0d070da3789f26b34283cc90f 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 11-11-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS11950 ecf191c0d070da3789f26b34283cc90f 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 3.4E-38 T 11-11-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS11950 ecf191c0d070da3789f26b34283cc90f 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 9.0E-40 T 11-11-2016 vm_RS11950 ecf191c0d070da3789f26b34283cc90f 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 21.367 T 11-11-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS11950 ecf191c0d070da3789f26b34283cc90f 89 SMART SM01387 8 88 8.5E-51 T 11-11-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS11950 ecf191c0d070da3789f26b34283cc90f 89 Pfam PF00312 Ribosomal protein S15 8 88 9.5E-36 T 11-11-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS11950 ecf191c0d070da3789f26b34283cc90f 89 SUPERFAMILY SSF47060 3 89 3.53E-34 T 11-11-2016 IPR009068 S15/NS1, RNA-binding vm_RS11950 ecf191c0d070da3789f26b34283cc90f 89 Gene3D G3DSA:1.10.287.10 3 89 2.5E-38 T 11-11-2016 IPR009068 S15/NS1, RNA-binding vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 Gene3D G3DSA:4.10.950.10 196 273 2.2E-35 T 11-11-2016 IPR014726 Ribosomal protein L2, domain 3 vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 SMART SM01383 42 118 9.3E-47 T 11-11-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 8.1E-34 T 11-11-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 Gene3D G3DSA:2.30.30.30 119 195 1.4E-33 T 11-11-2016 IPR014722 Ribosomal protein L2 domain 2 vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 11-11-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 PIRSF PIRSF002158 13 274 2.0E-102 T 11-11-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 SUPERFAMILY SSF50104 127 272 4.81E-61 T 11-11-2016 IPR008991 Translation protein SH3-like domain vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 Gene3D G3DSA:2.40.50.140 1 114 1.1E-49 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 250 1.2E-55 T 11-11-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 47.088 T 11-11-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 SMART SM01382 124 252 2.5E-91 T 11-11-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 SUPERFAMILY SSF50249 2 125 1.71E-49 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01970 75976c6be7275e5e0b3bffca2b619b15 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 1.1E-130 T 11-11-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02275 55c3136e4ba3d43f32b39a6a312c841e 286 Pfam PF03668 P-loop ATPase protein family 1 283 4.7E-111 T 11-11-2016 IPR005337 RapZ-like family GO:0005524 vm_RS02275 55c3136e4ba3d43f32b39a6a312c841e 286 SUPERFAMILY SSF52540 1 152 2.1E-12 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02275 55c3136e4ba3d43f32b39a6a312c841e 286 PIRSF PIRSF005052 1 286 5.8E-107 T 11-11-2016 IPR005337 RapZ-like family GO:0005524 vm_RS02275 55c3136e4ba3d43f32b39a6a312c841e 286 Gene3D G3DSA:3.40.50.300 1 155 1.2E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02275 55c3136e4ba3d43f32b39a6a312c841e 286 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 283 41.186 T 11-11-2016 IPR005337 RapZ-like family GO:0005524 vm_RS13225 3a4bad0c85b70d6b812586627e832f01 86 PRINTS PR00063 Ribosomal protein L27 signature 54 78 7.2E-40 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13225 3a4bad0c85b70d6b812586627e832f01 86 PRINTS PR00063 Ribosomal protein L27 signature 4 28 7.2E-40 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13225 3a4bad0c85b70d6b812586627e832f01 86 PRINTS PR00063 Ribosomal protein L27 signature 29 53 7.2E-40 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13225 3a4bad0c85b70d6b812586627e832f01 86 Gene3D G3DSA:2.40.50.100 20 82 6.6E-33 T 11-11-2016 vm_RS13225 3a4bad0c85b70d6b812586627e832f01 86 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 11-11-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13225 3a4bad0c85b70d6b812586627e832f01 86 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 71 5.0E-18 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13225 3a4bad0c85b70d6b812586627e832f01 86 SUPERFAMILY SSF110324 2 80 9.42E-35 T 11-11-2016 vm_RS13225 3a4bad0c85b70d6b812586627e832f01 86 Pfam PF01016 Ribosomal L27 protein 2 82 7.7E-40 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13225 3a4bad0c85b70d6b812586627e832f01 86 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 82 6.1E-44 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13225 3a4bad0c85b70d6b812586627e832f01 86 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 29.624 T 11-11-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS03775 5f0ce7d40033069abddd36f0f81e4ce5 192 Pfam PF01713 Smr domain 94 174 2.0E-20 T 11-11-2016 IPR002625 Smr domain vm_RS03775 5f0ce7d40033069abddd36f0f81e4ce5 192 SMART SM00463 91 174 2.6E-10 T 11-11-2016 IPR002625 Smr domain vm_RS03775 5f0ce7d40033069abddd36f0f81e4ce5 192 SUPERFAMILY SSF160443 92 174 1.31E-14 T 11-11-2016 IPR002625 Smr domain vm_RS00180 dbac4ffb31435d4a7b79492c42f9ca3b 169 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 160 1.0E-61 T 11-11-2016 IPR023635 Peptide deformylase vm_RS00180 dbac4ffb31435d4a7b79492c42f9ca3b 169 PRINTS PR01576 Peptide deformylase signature 120 149 3.2E-37 T 11-11-2016 IPR023635 Peptide deformylase vm_RS00180 dbac4ffb31435d4a7b79492c42f9ca3b 169 PRINTS PR01576 Peptide deformylase signature 89 100 3.2E-37 T 11-11-2016 IPR023635 Peptide deformylase vm_RS00180 dbac4ffb31435d4a7b79492c42f9ca3b 169 PRINTS PR01576 Peptide deformylase signature 101 119 3.2E-37 T 11-11-2016 IPR023635 Peptide deformylase vm_RS00180 dbac4ffb31435d4a7b79492c42f9ca3b 169 PRINTS PR01576 Peptide deformylase signature 33 62 3.2E-37 T 11-11-2016 IPR023635 Peptide deformylase vm_RS00180 dbac4ffb31435d4a7b79492c42f9ca3b 169 Hamap MF_00163 Peptide deformylase [def]. 2 162 31.011 T 11-11-2016 IPR023635 Peptide deformylase vm_RS00180 dbac4ffb31435d4a7b79492c42f9ca3b 169 Gene3D G3DSA:3.90.45.10 5 168 1.2E-63 T 11-11-2016 IPR023635 Peptide deformylase vm_RS00180 dbac4ffb31435d4a7b79492c42f9ca3b 169 PIRSF PIRSF004749 1 169 2.0E-56 T 11-11-2016 IPR023635 Peptide deformylase vm_RS00180 dbac4ffb31435d4a7b79492c42f9ca3b 169 SUPERFAMILY SSF56420 3 165 1.96E-62 T 11-11-2016 IPR023635 Peptide deformylase vm_RS00180 dbac4ffb31435d4a7b79492c42f9ca3b 169 Pfam PF01327 Polypeptide deformylase 4 152 3.5E-50 T 11-11-2016 IPR023635 Peptide deformylase vm_RS06740 f6d141c49ea5b3324296c08f21576726 358 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 262 4.5E-26 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain vm_RS06740 f6d141c49ea5b3324296c08f21576726 358 SUPERFAMILY SSF111369 49 265 2.62E-29 T 11-11-2016 vm_RS06740 f6d141c49ea5b3324296c08f21576726 358 Gene3D G3DSA:2.40.50.100 156 187 4.5E-10 T 11-11-2016 vm_RS06740 f6d141c49ea5b3324296c08f21576726 358 Gene3D G3DSA:2.40.50.100 70 93 4.5E-10 T 11-11-2016 vm_RS06740 f6d141c49ea5b3324296c08f21576726 358 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 344 1.3E-62 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 vm_RS02365 1871934b9f7e9358b08f0b1f6e91a88d 242 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 50 180 2.2E-44 T 11-11-2016 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 vm_RS02365 1871934b9f7e9358b08f0b1f6e91a88d 242 Gene3D G3DSA:3.40.1130.10 30 216 5.2E-19 T 11-11-2016 vm_RS02365 1871934b9f7e9358b08f0b1f6e91a88d 242 SUPERFAMILY SSF69593 7 237 6.67E-58 T 11-11-2016 vm_RS02365 1871934b9f7e9358b08f0b1f6e91a88d 242 SMART SM00563 67 182 5.2E-40 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 vm_RS02365 1871934b9f7e9358b08f0b1f6e91a88d 242 Pfam PF01553 Acyltransferase 60 180 1.6E-30 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 267 378 6.5E-26 T 11-11-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 SUPERFAMILY SSF55957 374 466 4.32E-19 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 Gene3D G3DSA:3.40.120.10 256 382 3.6E-35 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 Gene3D G3DSA:3.40.120.10 181 255 6.9E-24 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 2.1E-11 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 214 227 2.1E-11 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 242 257 2.1E-11 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 180 199 2.1E-11 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 SUPERFAMILY SSF53738 250 379 4.71E-30 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 SUPERFAMILY SSF53738 2 187 8.83E-40 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 Gene3D G3DSA:3.40.120.10 2 179 2.9E-47 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 Gene3D G3DSA:3.30.310.50 395 468 3.7E-19 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 417 465 1.5E-9 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 162 262 1.4E-24 T 11-11-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12140 9a5eb34627e984e8d20afb45dd7d0e4a 470 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 2 137 2.8E-38 T 11-11-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS01475 e7b254f8658f7f8c163bbda73ea41a94 601 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 208 408 2.4E-17 T 11-11-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 vm_RS01475 e7b254f8658f7f8c163bbda73ea41a94 601 Pfam PF11412 Disulphide bond corrector protein DsbC 40 150 8.2E-30 T 11-11-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain vm_RS01475 e7b254f8658f7f8c163bbda73ea41a94 601 SUPERFAMILY SSF74863 38 150 1.1E-39 T 11-11-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain vm_RS01475 e7b254f8658f7f8c163bbda73ea41a94 601 Gene3D G3DSA:3.40.30.10 487 598 2.6E-36 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS01475 e7b254f8658f7f8c163bbda73ea41a94 601 ProSitePatterns PS00194 Thioredoxin family active site. 508 526 - T 11-11-2016 IPR017937 Thioredoxin, conserved site GO:0045454 vm_RS01475 e7b254f8658f7f8c163bbda73ea41a94 601 Gene3D G3DSA:2.60.40.1250 34 151 7.6E-42 T 11-11-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain vm_RS01475 e7b254f8658f7f8c163bbda73ea41a94 601 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 600 39.418 T 11-11-2016 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 vm_RS01475 e7b254f8658f7f8c163bbda73ea41a94 601 Pfam PF13899 Thioredoxin-like 489 553 2.1E-14 T 11-11-2016 vm_RS01475 e7b254f8658f7f8c163bbda73ea41a94 601 SUPERFAMILY SSF52833 485 597 7.79E-22 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS12960 58383f2c46cfcba9a96ba2cf77b626f4 287 SUPERFAMILY SSF50182 120 185 3.6E-17 T 11-11-2016 IPR010920 LSM domain vm_RS12960 58383f2c46cfcba9a96ba2cf77b626f4 287 Pfam PF05552 Conserved TM helix 21 69 1.2E-11 T 11-11-2016 IPR008910 Conserved TM helix vm_RS12960 58383f2c46cfcba9a96ba2cf77b626f4 287 Pfam PF00924 Mechanosensitive ion channel 77 274 6.8E-59 T 11-11-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 vm_RS12960 58383f2c46cfcba9a96ba2cf77b626f4 287 SUPERFAMILY SSF82861 33 118 3.01E-17 T 11-11-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 vm_RS12960 58383f2c46cfcba9a96ba2cf77b626f4 287 SUPERFAMILY SSF82689 186 284 3.66E-35 T 11-11-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 vm_RS12960 58383f2c46cfcba9a96ba2cf77b626f4 287 Gene3D G3DSA:3.30.70.100 188 272 4.0E-33 T 11-11-2016 vm_RS12960 58383f2c46cfcba9a96ba2cf77b626f4 287 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 149 183 - T 11-11-2016 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 vm_RS12960 58383f2c46cfcba9a96ba2cf77b626f4 287 Gene3D G3DSA:2.30.30.60 135 184 1.9E-19 T 11-11-2016 vm_RS14255 a46c248599f1659dd2115b4e2d3d379f 229 Pfam PF07356 Protein of unknown function (DUF1481) 33 226 1.4E-58 T 11-11-2016 IPR010858 Protein of unknown function DUF1481 vm_RS14255 a46c248599f1659dd2115b4e2d3d379f 229 PIRSF PIRSF028160 1 229 9.8E-120 T 11-11-2016 IPR016872 Uncharacterised conserved protein UCP028160 vm_RS00845 137ad4235e1f09dd93d0cb1991ed1a87 309 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 18 275 1.5E-80 T 11-11-2016 IPR017039 Virulence factor BrkB vm_RS00845 137ad4235e1f09dd93d0cb1991ed1a87 309 Pfam PF03631 Virulence factor BrkB 28 276 2.7E-59 T 11-11-2016 IPR017039 Virulence factor BrkB vm_RS00845 137ad4235e1f09dd93d0cb1991ed1a87 309 PIRSF PIRSF035875 2 295 1.2E-53 T 11-11-2016 IPR017039 Virulence factor BrkB vm_RS00845 137ad4235e1f09dd93d0cb1991ed1a87 309 Hamap MF_00672 UPF0761 membrane protein YihY [yihY]. 16 291 23.488 T 11-11-2016 IPR023679 Uncharacterised protein family UPF0761, bacterial vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 SMART SM00387 369 480 1.3E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 Gene3D G3DSA:3.30.450.20 77 190 7.6E-8 T 11-11-2016 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 SMART SM00388 260 325 4.6E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 Gene3D G3DSA:3.30.565.10 328 483 4.4E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 Gene3D G3DSA:1.10.287.130 253 321 1.6E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 SUPERFAMILY SSF47384 245 325 1.39E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 SUPERFAMILY SSF52172 501 620 3.13E-15 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 Pfam PF00512 His Kinase A (phospho-acceptor) domain 260 325 1.2E-8 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 SMART SM00448 502 615 1.8E-9 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 Pfam PF00072 Response regulator receiver domain 504 613 1.4E-9 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 SUPERFAMILY SSF55785 74 190 2.76E-5 T 11-11-2016 IPR000014 PAS domain vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 SUPERFAMILY SSF55874 315 481 2.75E-34 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 419 2.9E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 433 2.9E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 PRINTS PR00344 Bacterial sensor protein C-terminal signature 464 477 2.9E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 PRINTS PR00344 Bacterial sensor protein C-terminal signature 440 458 2.9E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 Pfam PF12860 PAS fold 93 196 2.5E-10 T 11-11-2016 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 Gene3D G3DSA:3.40.50.2300 501 620 4.3E-16 T 11-11-2016 vm_RS07665 7772678d80a9681d3588d80b613a5f8c 621 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 371 479 3.5E-15 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS04510 e1fdf51dede5149b566350d6bfb35da4 404 Pfam PF00364 Biotin-requiring enzyme 4 76 8.1E-20 T 11-11-2016 IPR000089 Biotin/lipoyl attachment vm_RS04510 e1fdf51dede5149b566350d6bfb35da4 404 Gene3D G3DSA:4.10.320.10 113 153 5.1E-20 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 vm_RS04510 e1fdf51dede5149b566350d6bfb35da4 404 SUPERFAMILY SSF47005 107 149 1.7E-11 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 vm_RS04510 e1fdf51dede5149b566350d6bfb35da4 404 Gene3D G3DSA:3.30.559.10 166 402 2.6E-92 T 11-11-2016 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 vm_RS04510 e1fdf51dede5149b566350d6bfb35da4 404 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 404 5.7E-185 T 11-11-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|Reactome: R-HSA-389661|Reactome: R-HSA-71064|Reactome: R-HSA-71403 vm_RS04510 e1fdf51dede5149b566350d6bfb35da4 404 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 174 402 2.5E-82 T 11-11-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 vm_RS04510 e1fdf51dede5149b566350d6bfb35da4 404 SUPERFAMILY SSF52777 175 403 1.96E-90 T 11-11-2016 vm_RS04510 e1fdf51dede5149b566350d6bfb35da4 404 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 11-11-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 vm_RS04510 e1fdf51dede5149b566350d6bfb35da4 404 SUPERFAMILY SSF51230 1 95 3.27E-25 T 11-11-2016 IPR011053 Single hybrid motif vm_RS04510 e1fdf51dede5149b566350d6bfb35da4 404 Pfam PF02817 e3 binding domain 113 146 2.8E-12 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 vm_RS04510 e1fdf51dede5149b566350d6bfb35da4 404 Gene3D G3DSA:2.40.50.100 1 95 1.9E-26 T 11-11-2016 vm_RS00225 efd94a6fc80f007294309351c4fc71e7 278 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 117 195 2.6E-12 T 11-11-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase vm_RS00225 efd94a6fc80f007294309351c4fc71e7 278 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 5 273 30.919 T 11-11-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 vm_RS00225 efd94a6fc80f007294309351c4fc71e7 278 SUPERFAMILY SSF53223 6 105 3.34E-31 T 11-11-2016 vm_RS00225 efd94a6fc80f007294309351c4fc71e7 278 Gene3D G3DSA:3.40.192.10 3 110 8.7E-36 T 11-11-2016 vm_RS00225 efd94a6fc80f007294309351c4fc71e7 278 Gene3D G3DSA:3.40.50.720 111 248 3.4E-44 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS00225 efd94a6fc80f007294309351c4fc71e7 278 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 8 274 1.8E-85 T 11-11-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 vm_RS00225 efd94a6fc80f007294309351c4fc71e7 278 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 10 92 3.4E-22 T 11-11-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163 vm_RS00225 efd94a6fc80f007294309351c4fc71e7 278 SUPERFAMILY SSF51735 106 273 6.7E-41 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS09200 a48465531e02389147e2889e89fce418 298 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 155 176 - T 11-11-2016 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 vm_RS09200 a48465531e02389147e2889e89fce418 298 Pfam PF08029 HisG, C-terminal domain 222 295 6.9E-24 T 11-11-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 vm_RS09200 a48465531e02389147e2889e89fce418 298 SUPERFAMILY SSF54913 225 297 1.56E-20 T 11-11-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta vm_RS09200 a48465531e02389147e2889e89fce418 298 Gene3D G3DSA:3.40.190.10 2 138 6.4E-49 T 11-11-2016 vm_RS09200 a48465531e02389147e2889e89fce418 298 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 5 298 35.36 T 11-11-2016 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17 vm_RS09200 a48465531e02389147e2889e89fce418 298 Gene3D G3DSA:3.30.70.120 225 298 3.3E-30 T 11-11-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal vm_RS09200 a48465531e02389147e2889e89fce418 298 SUPERFAMILY SSF53850 5 222 9.96E-67 T 11-11-2016 vm_RS09200 a48465531e02389147e2889e89fce418 298 Pfam PF01634 ATP phosphoribosyltransferase 53 218 4.3E-46 T 11-11-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 vm_RS09200 a48465531e02389147e2889e89fce418 298 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 6 196 3.4E-55 T 11-11-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 vm_RS09200 a48465531e02389147e2889e89fce418 298 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 204 297 3.5E-29 T 11-11-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 vm_RS12305 ad029b759fcf4568cb5ce2a490ae987c 197 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 4 40 1.3E-14 T 11-11-2016 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 vm_RS12305 ad029b759fcf4568cb5ce2a490ae987c 197 Pfam PF00355 Rieske [2Fe-2S] domain 54 174 6.9E-12 T 11-11-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 vm_RS12305 ad029b759fcf4568cb5ce2a490ae987c 197 SUPERFAMILY SSF50022 30 194 6.5E-44 T 11-11-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 vm_RS12305 ad029b759fcf4568cb5ce2a490ae987c 197 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 190 1.0E-75 T 11-11-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 vm_RS12305 ad029b759fcf4568cb5ce2a490ae987c 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 149 161 1.3E-7 T 11-11-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 vm_RS12305 ad029b759fcf4568cb5ce2a490ae987c 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 119 130 1.3E-7 T 11-11-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 vm_RS12305 ad029b759fcf4568cb5ce2a490ae987c 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 162 174 1.3E-7 T 11-11-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 vm_RS12305 ad029b759fcf4568cb5ce2a490ae987c 197 Gene3D G3DSA:2.102.10.10 8 193 6.6E-42 T 11-11-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 vm_RS08330 66c26bd6c5a6c2f81cd85f5b659dd216 120 Gene3D G3DSA:3.30.479.10 1 120 1.1E-41 T 11-11-2016 vm_RS08330 66c26bd6c5a6c2f81cd85f5b659dd216 120 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 5 120 1.2E-35 T 11-11-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 vm_RS08330 66c26bd6c5a6c2f81cd85f5b659dd216 120 SUPERFAMILY SSF55620 1 119 1.0E-41 T 11-11-2016 vm_RS08330 66c26bd6c5a6c2f81cd85f5b659dd216 120 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 4 96 3.9E-33 T 11-11-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 vm_RS08330 66c26bd6c5a6c2f81cd85f5b659dd216 120 PIRSF PIRSF006113 1 120 4.5E-53 T 11-11-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein Reactome: R-HSA-1474151 vm_RS07175 b358fb8bd6acea7e071a793eebc6bfc1 253 SUPERFAMILY SSF46785 4 77 3.46E-14 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS07175 b358fb8bd6acea7e071a793eebc6bfc1 253 Pfam PF00455 DeoR C terminal sensor domain 76 234 1.6E-44 T 11-11-2016 IPR014036 DeoR C-terminal sensor domain vm_RS07175 b358fb8bd6acea7e071a793eebc6bfc1 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 26 40 1.2E-7 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS07175 b358fb8bd6acea7e071a793eebc6bfc1 253 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 40 58 1.2E-7 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS07175 b358fb8bd6acea7e071a793eebc6bfc1 253 Pfam PF08220 DeoR-like helix-turn-helix domain 7 62 1.9E-16 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS07175 b358fb8bd6acea7e071a793eebc6bfc1 253 SUPERFAMILY SSF100950 75 234 5.12E-24 T 11-11-2016 vm_RS07175 b358fb8bd6acea7e071a793eebc6bfc1 253 Gene3D G3DSA:3.30.750.70 79 161 3.3E-12 T 11-11-2016 vm_RS07175 b358fb8bd6acea7e071a793eebc6bfc1 253 SMART SM01134 74 235 1.2E-60 T 11-11-2016 vm_RS07175 b358fb8bd6acea7e071a793eebc6bfc1 253 Gene3D G3DSA:1.10.10.10 4 60 1.9E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS07175 b358fb8bd6acea7e071a793eebc6bfc1 253 SMART SM00420 7 60 6.8E-15 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS00595 02163d27995c633f623712b7363de2e1 310 Gene3D G3DSA:1.10.150.130 15 110 4.6E-20 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal vm_RS00595 02163d27995c633f623712b7363de2e1 310 SUPERFAMILY SSF47823 16 107 4.12E-10 T 11-11-2016 IPR010998 Integrase, Lambda-type, N-terminal vm_RS00595 02163d27995c633f623712b7363de2e1 310 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 15 304 54.706 T 11-11-2016 IPR023009 Tyrosine recombinase XerC/XerD vm_RS00595 02163d27995c633f623712b7363de2e1 310 SUPERFAMILY SSF56349 117 302 2.65E-53 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS00595 02163d27995c633f623712b7363de2e1 310 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 18 306 4.4E-108 T 11-11-2016 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007049|GO:0007059|GO:0015074|GO:0051301 vm_RS00595 02163d27995c633f623712b7363de2e1 310 Gene3D G3DSA:1.10.443.10 123 298 6.3E-53 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS00595 02163d27995c633f623712b7363de2e1 310 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 17 100 6.2E-18 T 11-11-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 vm_RS00595 02163d27995c633f623712b7363de2e1 310 Pfam PF00589 Phage integrase family 122 290 3.3E-49 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS10655 6a41600b1c9d61bb2d8454577d9331d0 259 SUPERFAMILY SSF88723 4 164 1.86E-38 T 11-11-2016 IPR029060 PIN domain-like vm_RS10655 6a41600b1c9d61bb2d8454577d9331d0 259 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 165 257 9.3E-23 T 11-11-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 vm_RS10655 6a41600b1c9d61bb2d8454577d9331d0 259 Gene3D G3DSA:1.10.150.20 180 238 9.6E-18 T 11-11-2016 vm_RS10655 6a41600b1c9d61bb2d8454577d9331d0 259 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 4 157 2.9E-31 T 11-11-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 vm_RS10655 6a41600b1c9d61bb2d8454577d9331d0 259 Hamap MF_01192 Flap endonuclease Xni [xni]. 2 255 44.984 T 11-11-2016 IPR022895 Flap endonuclease Xni GO:0048256 vm_RS10655 6a41600b1c9d61bb2d8454577d9331d0 259 SMART SM00279 167 202 3.3E-7 T 11-11-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 vm_RS10655 6a41600b1c9d61bb2d8454577d9331d0 259 SUPERFAMILY SSF47807 164 257 1.12E-19 T 11-11-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 vm_RS10655 6a41600b1c9d61bb2d8454577d9331d0 259 Gene3D G3DSA:3.40.50.1010 4 179 1.2E-47 T 11-11-2016 IPR029060 PIN domain-like vm_RS10655 6a41600b1c9d61bb2d8454577d9331d0 259 SMART SM00475 3 254 1.8E-59 T 11-11-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 vm_RS09570 ef003d35706736627be497d76af474e0 195 ProSitePatterns PS00195 Glutaredoxin active site. 7 23 - T 11-11-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 vm_RS09570 ef003d35706736627be497d76af474e0 195 Gene3D G3DSA:3.40.30.10 1 194 1.1E-37 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS09570 ef003d35706736627be497d76af474e0 195 Pfam PF01323 DSBA-like thioredoxin domain 4 193 8.3E-29 T 11-11-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 vm_RS09570 ef003d35706736627be497d76af474e0 195 SUPERFAMILY SSF52833 1 195 2.76E-34 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS12835 7d25376e457b1232aed017888f91b278 326 SUPERFAMILY SSF52317 10 197 5.08E-32 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS12835 7d25376e457b1232aed017888f91b278 326 SMART SM00342 237 320 3.0E-27 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS12835 7d25376e457b1232aed017888f91b278 326 Gene3D G3DSA:1.10.10.60 225 273 1.5E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS12835 7d25376e457b1232aed017888f91b278 326 SUPERFAMILY SSF46689 274 324 1.79E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS12835 7d25376e457b1232aed017888f91b278 326 SUPERFAMILY SSF46689 220 272 2.24E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS12835 7d25376e457b1232aed017888f91b278 326 Gene3D G3DSA:3.40.50.880 15 224 1.1E-35 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS12835 7d25376e457b1232aed017888f91b278 326 Gene3D G3DSA:1.10.10.60 274 324 1.2E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS12835 7d25376e457b1232aed017888f91b278 326 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 289 304 8.3E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS12835 7d25376e457b1232aed017888f91b278 326 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 304 320 8.3E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS12835 7d25376e457b1232aed017888f91b278 326 Pfam PF01965 DJ-1/PfpI family 46 177 3.0E-11 T 11-11-2016 IPR002818 DJ-1/PfpI vm_RS12835 7d25376e457b1232aed017888f91b278 326 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 274 316 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 vm_RS12835 7d25376e457b1232aed017888f91b278 326 Pfam PF12833 Helix-turn-helix domain 243 322 2.9E-22 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 766 843 1.4E-27 T 11-11-2016 IPR019489 Clp ATPase, C-terminal vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 Gene3D G3DSA:1.10.8.60 778 853 2.8E-31 T 11-11-2016 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 11-11-2016 IPR028299 ClpA/B, conserved site 2 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 SUPERFAMILY SSF52540 546 850 2.25E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 853 0.0 T 11-11-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 759 3.6E-57 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 SMART SM00382 198 344 1.4E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 SMART SM00382 597 748 3.7E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 11-11-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 Gene3D G3DSA:3.40.50.300 160 342 5.5E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 Gene3D G3DSA:3.40.50.300 550 777 9.5E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 4.3E-42 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 4.3E-42 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 4.3E-42 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 4.3E-42 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 SUPERFAMILY SSF81923 4 156 9.81E-42 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 SMART SM01086 766 855 2.1E-37 T 11-11-2016 IPR019489 Clp ATPase, C-terminal vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 335 2.0E-13 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 Gene3D G3DSA:1.10.1780.10 1 148 6.4E-46 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 2.3E-13 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 4.4E-13 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 Gene3D G3DSA:1.10.8.60 343 428 3.2E-37 T 11-11-2016 vm_RS11635 738949020a3ae25829ac2ea2528593aa 857 SUPERFAMILY SSF52540 159 545 8.19E-101 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14345 afac0d525bf180e81fb4f22945612024 359 PIRSF PIRSF000390 1 359 1.1E-103 T 11-11-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase vm_RS14345 afac0d525bf180e81fb4f22945612024 359 SUPERFAMILY SSF53383 13 358 1.48E-111 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS14345 afac0d525bf180e81fb4f22945612024 359 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 14 357 6.5E-120 T 11-11-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase vm_RS14345 afac0d525bf180e81fb4f22945612024 359 Gene3D G3DSA:3.40.640.10 11 242 1.0E-86 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS14345 afac0d525bf180e81fb4f22945612024 359 Gene3D G3DSA:3.90.1150.10 245 358 3.2E-29 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS07475 df09188bb154a14e191d35d1e2480609 1613 SUPERFAMILY SSF51735 1083 1282 1.05E-28 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS07475 df09188bb154a14e191d35d1e2480609 1613 SUPERFAMILY SSF51735 945 1047 1.05E-28 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS07475 df09188bb154a14e191d35d1e2480609 1613 PIRSF PIRSF036761 1 1610 0.0 T 11-11-2016 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 vm_RS07475 df09188bb154a14e191d35d1e2480609 1613 Gene3D G3DSA:3.40.192.10 800 913 7.5E-4 T 11-11-2016 vm_RS07475 df09188bb154a14e191d35d1e2480609 1613 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 76 1603 0.0 T 11-11-2016 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 vm_RS07475 df09188bb154a14e191d35d1e2480609 1613 Gene3D G3DSA:3.40.50.720 1108 1201 1.1E-33 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS07475 df09188bb154a14e191d35d1e2480609 1613 Gene3D G3DSA:3.40.50.720 942 1053 1.1E-33 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS07475 df09188bb154a14e191d35d1e2480609 1613 SUPERFAMILY SSF53223 754 940 2.11E-25 T 11-11-2016 vm_RS01835 23b2d0d8700fca5bf99071768d45dab7 470 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 33 465 63.141 T 11-11-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 vm_RS01835 23b2d0d8700fca5bf99071768d45dab7 470 Gene3D G3DSA:2.40.50.140 405 467 2.2E-27 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01835 23b2d0d8700fca5bf99071768d45dab7 470 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 34 463 3.7E-111 T 11-11-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 vm_RS01835 23b2d0d8700fca5bf99071768d45dab7 470 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 169 189 - T 11-11-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 vm_RS01835 23b2d0d8700fca5bf99071768d45dab7 470 Pfam PF00919 Uncharacterized protein family UPF0004 34 122 4.8E-22 T 11-11-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 vm_RS01835 23b2d0d8700fca5bf99071768d45dab7 470 Gene3D G3DSA:3.80.30.20 163 402 6.0E-74 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe vm_RS01835 23b2d0d8700fca5bf99071768d45dab7 470 SMART SM00729 165 390 4.5E-57 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 vm_RS01835 23b2d0d8700fca5bf99071768d45dab7 470 SUPERFAMILY SSF102114 131 395 7.72E-53 T 11-11-2016 vm_RS01835 23b2d0d8700fca5bf99071768d45dab7 470 Pfam PF04055 Radical SAM superfamily 171 348 6.0E-30 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS01835 23b2d0d8700fca5bf99071768d45dab7 470 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 34 463 7.5E-189 T 11-11-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 vm_RS04100 9c7dee4253846e737b7799bbe4ae4876 116 Pfam PF03960 ArsC family 6 115 4.1E-21 T 11-11-2016 IPR006660 Arsenate reductase-like vm_RS04100 9c7dee4253846e737b7799bbe4ae4876 116 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 3 116 1.3E-45 T 11-11-2016 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 vm_RS04100 9c7dee4253846e737b7799bbe4ae4876 116 Gene3D G3DSA:3.40.30.10 1 116 8.3E-49 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS04100 9c7dee4253846e737b7799bbe4ae4876 116 SUPERFAMILY SSF52833 2 116 1.08E-35 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS08975 98692f6138df2bb0ed5b92932aced16a 523 Gene3D G3DSA:3.60.120.10 12 519 1.5E-162 T 11-11-2016 IPR005801 ADC synthase GO:0009058 vm_RS08975 98692f6138df2bb0ed5b92932aced16a 523 Pfam PF00425 chorismate binding enzyme 247 507 1.4E-84 T 11-11-2016 IPR015890 Chorismate-utilising enzyme, C-terminal vm_RS08975 98692f6138df2bb0ed5b92932aced16a 523 PIRSF PIRSF001373 3 523 3.7E-255 T 11-11-2016 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS08975 98692f6138df2bb0ed5b92932aced16a 523 PRINTS PR00095 Anthranilate synthase component I signature 369 382 4.3E-23 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS08975 98692f6138df2bb0ed5b92932aced16a 523 PRINTS PR00095 Anthranilate synthase component I signature 449 463 4.3E-23 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS08975 98692f6138df2bb0ed5b92932aced16a 523 PRINTS PR00095 Anthranilate synthase component I signature 355 368 4.3E-23 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS08975 98692f6138df2bb0ed5b92932aced16a 523 PRINTS PR00095 Anthranilate synthase component I signature 464 478 4.3E-23 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS08975 98692f6138df2bb0ed5b92932aced16a 523 SUPERFAMILY SSF56322 14 515 6.8E-163 T 11-11-2016 IPR005801 ADC synthase GO:0009058 vm_RS08975 98692f6138df2bb0ed5b92932aced16a 523 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 22 519 2.9E-226 T 11-11-2016 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS08975 98692f6138df2bb0ed5b92932aced16a 523 Pfam PF04715 Anthranilate synthase component I, N terminal region 24 198 6.4E-16 T 11-11-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS06810 cb1c99e3f560f1787a22e7c03b70796e 371 Pfam PF07143 CrtC N-terminal lipocalin domain 75 245 2.3E-41 T 11-11-2016 IPR010791 AttH domain vm_RS06810 cb1c99e3f560f1787a22e7c03b70796e 371 SUPERFAMILY SSF159245 51 371 8.37E-85 T 11-11-2016 vm_RS06810 cb1c99e3f560f1787a22e7c03b70796e 371 Pfam PF17186 Lipocalin-like domain 249 371 2.4E-28 T 11-11-2016 IPR033451 AttH, lipocalin-like domain vm_RS06810 cb1c99e3f560f1787a22e7c03b70796e 371 Gene3D G3DSA:2.40.370.10 62 247 3.6E-54 T 11-11-2016 IPR023374 AttH-like domain vm_RS06810 cb1c99e3f560f1787a22e7c03b70796e 371 Gene3D G3DSA:2.40.370.10 250 371 4.9E-26 T 11-11-2016 IPR023374 AttH-like domain vm_RS11455 13beec62cc1cb53aef294d24e00b65d1 315 PRINTS PR01755 Bacterial translocase SecF protein signature 233 248 3.5E-32 T 11-11-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial vm_RS11455 13beec62cc1cb53aef294d24e00b65d1 315 PRINTS PR01755 Bacterial translocase SecF protein signature 38 53 3.5E-32 T 11-11-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial vm_RS11455 13beec62cc1cb53aef294d24e00b65d1 315 PRINTS PR01755 Bacterial translocase SecF protein signature 201 219 3.5E-32 T 11-11-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial vm_RS11455 13beec62cc1cb53aef294d24e00b65d1 315 PRINTS PR01755 Bacterial translocase SecF protein signature 153 167 3.5E-32 T 11-11-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial vm_RS11455 13beec62cc1cb53aef294d24e00b65d1 315 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 39 285 5.7E-88 T 11-11-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 vm_RS11455 13beec62cc1cb53aef294d24e00b65d1 315 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 118 282 3.0E-57 T 11-11-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial vm_RS11455 13beec62cc1cb53aef294d24e00b65d1 315 Gene3D G3DSA:1.20.1640.10 124 293 5.0E-28 T 11-11-2016 vm_RS11455 13beec62cc1cb53aef294d24e00b65d1 315 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 11 296 29.827 T 11-11-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 vm_RS11455 13beec62cc1cb53aef294d24e00b65d1 315 Pfam PF02355 Protein export membrane protein 111 292 2.4E-71 T 11-11-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial vm_RS11455 13beec62cc1cb53aef294d24e00b65d1 315 SUPERFAMILY SSF82866 74 293 3.53E-41 T 11-11-2016 vm_RS11455 13beec62cc1cb53aef294d24e00b65d1 315 Pfam PF07549 SecD/SecF GG Motif 35 60 8.5E-11 T 11-11-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site vm_RS00090 61b5782f97e9b9da2e4b6eb845d4a5ab 613 SUPERFAMILY SSF143975 3 420 1.83E-134 T 11-11-2016 vm_RS00090 61b5782f97e9b9da2e4b6eb845d4a5ab 613 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 509 520 - T 11-11-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 vm_RS00090 61b5782f97e9b9da2e4b6eb845d4a5ab 613 SUPERFAMILY SSF52016 421 608 1.18E-60 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel vm_RS00090 61b5782f97e9b9da2e4b6eb845d4a5ab 613 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 607 44.888 T 11-11-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 vm_RS00090 61b5782f97e9b9da2e4b6eb845d4a5ab 613 Pfam PF00920 Dehydratase family 34 604 1.2E-217 T 11-11-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 vm_RS00090 61b5782f97e9b9da2e4b6eb845d4a5ab 613 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 607 1.7E-263 T 11-11-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 vm_RS00090 61b5782f97e9b9da2e4b6eb845d4a5ab 613 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 11-11-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 vm_RS06920 7d402daca049f6b33ad15629db733de7 324 SUPERFAMILY SSF111369 40 102 6.67E-6 T 11-11-2016 vm_RS06920 7d402daca049f6b33ad15629db733de7 324 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 40 276 8.4E-12 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain vm_RS06920 7d402daca049f6b33ad15629db733de7 324 Gene3D G3DSA:2.40.50.100 42 76 1.9E-13 T 11-11-2016 vm_RS06920 7d402daca049f6b33ad15629db733de7 324 Gene3D G3DSA:2.40.50.100 203 237 1.9E-13 T 11-11-2016 vm_RS01670 0395815bc4c56e0f40bffbfbdf26b020 252 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 149 160 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS01670 0395815bc4c56e0f40bffbfbdf26b020 252 Gene3D G3DSA:3.10.20.30 3 106 7.4E-35 T 11-11-2016 IPR012675 Beta-grasp domain vm_RS01670 0395815bc4c56e0f40bffbfbdf26b020 252 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 9 111 3.5E-34 T 11-11-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS01670 0395815bc4c56e0f40bffbfbdf26b020 252 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 11 229 1.8E-94 T 11-11-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS01670 0395815bc4c56e0f40bffbfbdf26b020 252 SUPERFAMILY SSF54292 5 106 4.06E-29 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 vm_RS01670 0395815bc4c56e0f40bffbfbdf26b020 252 SUPERFAMILY SSF46548 107 226 1.5E-30 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 vm_RS01670 0395815bc4c56e0f40bffbfbdf26b020 252 Pfam PF13183 4Fe-4S dicluster domain 147 219 5.3E-11 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain vm_RS01670 0395815bc4c56e0f40bffbfbdf26b020 252 Gene3D G3DSA:1.10.1060.10 107 229 1.2E-35 T 11-11-2016 vm_RS01670 0395815bc4c56e0f40bffbfbdf26b020 252 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 11-11-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 vm_RS07885 f00417d0f76042a2dfe893ca1ae40c1d 450 SUPERFAMILY SSF53067 85 205 5.5E-26 T 11-11-2016 vm_RS07885 f00417d0f76042a2dfe893ca1ae40c1d 450 SUPERFAMILY SSF53067 1 44 5.5E-26 T 11-11-2016 vm_RS07885 f00417d0f76042a2dfe893ca1ae40c1d 450 SUPERFAMILY SSF53067 207 276 1.94E-29 T 11-11-2016 vm_RS07885 f00417d0f76042a2dfe893ca1ae40c1d 450 SUPERFAMILY SSF53067 328 447 1.94E-29 T 11-11-2016 vm_RS07885 f00417d0f76042a2dfe893ca1ae40c1d 450 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 213 226 - T 11-11-2016 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 vm_RS07885 f00417d0f76042a2dfe893ca1ae40c1d 450 Gene3D G3DSA:3.30.420.40 374 433 3.3E-16 T 11-11-2016 vm_RS07885 f00417d0f76042a2dfe893ca1ae40c1d 450 Gene3D G3DSA:3.30.420.40 218 241 3.3E-16 T 11-11-2016 vm_RS07885 f00417d0f76042a2dfe893ca1ae40c1d 450 Pfam PF00012 Hsp70 protein 129 259 7.0E-12 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS07885 f00417d0f76042a2dfe893ca1ae40c1d 450 Gene3D G3DSA:3.30.420.40 85 217 1.7E-30 T 11-11-2016 vm_RS07885 f00417d0f76042a2dfe893ca1ae40c1d 450 Gene3D G3DSA:3.30.420.40 2 43 1.7E-30 T 11-11-2016 vm_RS01750 097420221eee7124f65afd2cf6f72b3a 243 TIGRFAM TIGR02190 GlrX-dom: glutaredoxin-family domain 164 241 4.3E-39 T 11-11-2016 IPR011906 Glutaredoxin domain KEGG: 00480+1.11.1.15 vm_RS01750 097420221eee7124f65afd2cf6f72b3a 243 ProSitePatterns PS00195 Glutaredoxin active site. 175 191 - T 11-11-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 vm_RS01750 097420221eee7124f65afd2cf6f72b3a 243 Gene3D G3DSA:3.40.30.10 169 241 3.8E-26 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS01750 097420221eee7124f65afd2cf6f72b3a 243 Pfam PF08534 Redoxin 5 160 5.3E-33 T 11-11-2016 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 vm_RS01750 097420221eee7124f65afd2cf6f72b3a 243 SUPERFAMILY SSF52833 2 241 6.6E-49 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS01750 097420221eee7124f65afd2cf6f72b3a 243 PRINTS PR00160 Glutaredoxin signature 228 241 4.2E-15 T 11-11-2016 IPR014025 Glutaredoxin subgroup vm_RS01750 097420221eee7124f65afd2cf6f72b3a 243 PRINTS PR00160 Glutaredoxin signature 173 191 4.2E-15 T 11-11-2016 IPR014025 Glutaredoxin subgroup vm_RS01750 097420221eee7124f65afd2cf6f72b3a 243 PRINTS PR00160 Glutaredoxin signature 214 227 4.2E-15 T 11-11-2016 IPR014025 Glutaredoxin subgroup vm_RS01750 097420221eee7124f65afd2cf6f72b3a 243 Pfam PF00462 Glutaredoxin 173 231 1.7E-18 T 11-11-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 vm_RS01750 097420221eee7124f65afd2cf6f72b3a 243 Gene3D G3DSA:3.40.30.10 2 163 7.2E-65 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS06395 45dbbeff16b161bb720d347b1a22b53f 819 SMART SM00052 414 661 2.7E-59 T 11-11-2016 IPR001633 EAL domain vm_RS06395 45dbbeff16b161bb720d347b1a22b53f 819 SUPERFAMILY SSF141868 420 666 2.09E-67 T 11-11-2016 IPR001633 EAL domain vm_RS06395 45dbbeff16b161bb720d347b1a22b53f 819 Gene3D G3DSA:3.30.450.20 127 214 1.2E-12 T 11-11-2016 vm_RS06395 45dbbeff16b161bb720d347b1a22b53f 819 Pfam PF13426 PAS domain 137 236 9.3E-7 T 11-11-2016 IPR000014 PAS domain vm_RS06395 45dbbeff16b161bb720d347b1a22b53f 819 Gene3D G3DSA:3.10.580.10 697 818 3.5E-8 T 11-11-2016 vm_RS06395 45dbbeff16b161bb720d347b1a22b53f 819 SUPERFAMILY SSF54631 693 818 5.97E-9 T 11-11-2016 vm_RS06395 45dbbeff16b161bb720d347b1a22b53f 819 SMART SM00091 126 192 2.7E-4 T 11-11-2016 IPR000014 PAS domain vm_RS06395 45dbbeff16b161bb720d347b1a22b53f 819 Gene3D G3DSA:3.20.20.450 418 666 9.2E-71 T 11-11-2016 IPR001633 EAL domain vm_RS06395 45dbbeff16b161bb720d347b1a22b53f 819 Pfam PF00563 EAL domain 422 656 7.9E-62 T 11-11-2016 IPR001633 EAL domain vm_RS06395 45dbbeff16b161bb720d347b1a22b53f 819 SUPERFAMILY SSF55785 136 235 2.47E-16 T 11-11-2016 IPR000014 PAS domain vm_RS06395 45dbbeff16b161bb720d347b1a22b53f 819 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 127 239 1.5E-12 T 11-11-2016 IPR000014 PAS domain vm_RS10390 eaf7b59d385a849a7e9c37585fc95920 391 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 65 76 1.8E-17 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 vm_RS10390 eaf7b59d385a849a7e9c37585fc95920 391 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 148 161 1.8E-17 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 vm_RS10390 eaf7b59d385a849a7e9c37585fc95920 391 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 121 138 1.8E-17 T 11-11-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 vm_RS10390 eaf7b59d385a849a7e9c37585fc95920 391 SUPERFAMILY SSF69189 282 374 4.71E-27 T 11-11-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 vm_RS10390 eaf7b59d385a849a7e9c37585fc95920 391 SUPERFAMILY SSF56601 12 282 7.39E-87 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS10390 eaf7b59d385a849a7e9c37585fc95920 391 Gene3D G3DSA:3.40.710.10 29 281 1.8E-97 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS10390 eaf7b59d385a849a7e9c37585fc95920 391 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 282 372 9.4E-27 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 vm_RS10390 eaf7b59d385a849a7e9c37585fc95920 391 Gene3D G3DSA:2.60.410.10 282 372 6.8E-33 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 vm_RS10390 eaf7b59d385a849a7e9c37585fc95920 391 SMART SM00936 282 372 5.6E-37 T 11-11-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 vm_RS10390 eaf7b59d385a849a7e9c37585fc95920 391 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 33 262 6.8E-93 T 11-11-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 Gene3D G3DSA:3.30.300.10 137 234 4.3E-44 T 11-11-2016 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 117 127 - T 11-11-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 SUPERFAMILY SSF55973 4 110 1.88E-47 T 11-11-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 Gene3D G3DSA:3.30.300.10 245 382 2.8E-70 T 11-11-2016 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 SUPERFAMILY SSF55973 112 233 1.57E-52 T 11-11-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 Pfam PF02772 S-adenosylmethionine synthetase, central domain 115 232 5.6E-46 T 11-11-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 5 102 3.8E-43 T 11-11-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 380 7.5E-199 T 11-11-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 260 268 - T 11-11-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 382 59.269 T 11-11-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 Gene3D G3DSA:3.30.300.10 12 136 3.8E-50 T 11-11-2016 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 PIRSF PIRSF000497 1 382 2.6E-175 T 11-11-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 234 370 2.8E-69 T 11-11-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 vm_RS13000 d8da6b14a813dd59c6cf6e7b749c05c5 385 SUPERFAMILY SSF55973 234 383 9.03E-71 T 11-11-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 vm_RS00385 19786e6d6fc0bdd2967572fa487e9b01 512 Pfam PF08447 PAS fold 32 115 9.6E-19 T 11-11-2016 IPR013655 PAS fold-3 GO:0005515 vm_RS00385 19786e6d6fc0bdd2967572fa487e9b01 512 SUPERFAMILY SSF55785 21 116 2.62E-27 T 11-11-2016 IPR000014 PAS domain vm_RS00385 19786e6d6fc0bdd2967572fa487e9b01 512 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 22 118 3.9E-16 T 11-11-2016 IPR000014 PAS domain vm_RS00385 19786e6d6fc0bdd2967572fa487e9b01 512 SMART SM00091 9 75 1.1E-4 T 11-11-2016 IPR000014 PAS domain vm_RS00385 19786e6d6fc0bdd2967572fa487e9b01 512 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 339 505 8.6E-35 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS00385 19786e6d6fc0bdd2967572fa487e9b01 512 Gene3D G3DSA:1.10.287.950 265 480 1.6E-50 T 11-11-2016 vm_RS00385 19786e6d6fc0bdd2967572fa487e9b01 512 Gene3D G3DSA:3.30.450.20 21 115 2.9E-24 T 11-11-2016 vm_RS00385 19786e6d6fc0bdd2967572fa487e9b01 512 SMART SM00283 250 511 6.6E-41 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS00385 19786e6d6fc0bdd2967572fa487e9b01 512 SUPERFAMILY SSF58104 233 506 1.44E-58 T 11-11-2016 vm_RS02935 0f5bf6c10a19a3cd913b57d495ec0076 316 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 2 315 1.5E-118 T 11-11-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS02935 0f5bf6c10a19a3cd913b57d495ec0076 316 Gene3D G3DSA:3.40.50.150 7 110 2.1E-49 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS02935 0f5bf6c10a19a3cd913b57d495ec0076 316 Gene3D G3DSA:3.40.50.150 220 316 2.1E-49 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS02935 0f5bf6c10a19a3cd913b57d495ec0076 316 PIRSF PIRSF004486 1 316 1.7E-100 T 11-11-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS02935 0f5bf6c10a19a3cd913b57d495ec0076 316 Pfam PF01795 MraW methylase family 5 315 5.2E-110 T 11-11-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS02935 0f5bf6c10a19a3cd913b57d495ec0076 316 SUPERFAMILY SSF53335 7 113 2.85E-44 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS02935 0f5bf6c10a19a3cd913b57d495ec0076 316 SUPERFAMILY SSF53335 217 316 2.85E-44 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS02935 0f5bf6c10a19a3cd913b57d495ec0076 316 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 7 316 38.155 T 11-11-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS02935 0f5bf6c10a19a3cd913b57d495ec0076 316 SUPERFAMILY SSF81799 113 216 7.19E-31 T 11-11-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS02935 0f5bf6c10a19a3cd913b57d495ec0076 316 Gene3D G3DSA:1.10.150.170 112 219 4.5E-35 T 11-11-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS14120 02373a9d3034682069bab0941bbbbcd6 497 Gene3D G3DSA:3.30.420.150 131 304 9.0E-51 T 11-11-2016 vm_RS14120 02373a9d3034682069bab0941bbbbcd6 497 Hamap MF_01550 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [gppA]. 2 495 58.141 T 11-11-2016 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase GO:0008894|GO:0015974 KEGG: 00230+3.6.1.40 vm_RS14120 02373a9d3034682069bab0941bbbbcd6 497 SUPERFAMILY SSF109604 309 495 2.67E-42 T 11-11-2016 vm_RS14120 02373a9d3034682069bab0941bbbbcd6 497 SUPERFAMILY SSF53067 9 129 2.51E-35 T 11-11-2016 vm_RS14120 02373a9d3034682069bab0941bbbbcd6 497 Pfam PF02541 Ppx/GppA phosphatase family 24 303 3.7E-88 T 11-11-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 vm_RS14120 02373a9d3034682069bab0941bbbbcd6 497 SUPERFAMILY SSF53067 135 304 1.38E-42 T 11-11-2016 vm_RS14120 02373a9d3034682069bab0941bbbbcd6 497 PIRSF PIRSF001267 1 497 1.6E-178 T 11-11-2016 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 vm_RS14120 02373a9d3034682069bab0941bbbbcd6 497 Gene3D G3DSA:3.30.420.40 5 129 1.9E-41 T 11-11-2016 vm_RS03115 4ad8a5abe10a48c2bb3c08fef2ad61fe 161 Pfam PF03737 Demethylmenaquinone methyltransferase 5 152 3.7E-42 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein vm_RS03115 4ad8a5abe10a48c2bb3c08fef2ad61fe 161 SUPERFAMILY SSF89562 1 158 3.27E-49 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein vm_RS03115 4ad8a5abe10a48c2bb3c08fef2ad61fe 161 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 2.3E-69 T 11-11-2016 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 vm_RS03115 4ad8a5abe10a48c2bb3c08fef2ad61fe 161 Gene3D G3DSA:3.50.30.40 5 157 7.1E-49 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein vm_RS12855 e4b9618b58ee896690b87bc4a1b65075 400 SUPERFAMILY SSF56349 111 387 1.0E-60 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS12855 e4b9618b58ee896690b87bc4a1b65075 400 Pfam PF00589 Phage integrase family 215 381 4.5E-25 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS12855 e4b9618b58ee896690b87bc4a1b65075 400 Gene3D G3DSA:1.10.443.10 214 388 2.2E-36 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS12855 e4b9618b58ee896690b87bc4a1b65075 400 Pfam PF13356 Domain of unknown function (DUF4102) 15 105 4.0E-13 T 11-11-2016 IPR025166 Domain of unknown function DUF4102 vm_RS12855 e4b9618b58ee896690b87bc4a1b65075 400 Gene3D G3DSA:1.10.150.130 113 208 1.5E-17 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal vm_RS04230 dd3ad05d59fda1f849a1781c4259886c 378 Pfam PF07196 Flagellin hook IN motif 197 245 1.0E-8 T 11-11-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 vm_RS04230 dd3ad05d59fda1f849a1781c4259886c 378 PRINTS PR00207 Flagellin signature 76 95 6.4E-25 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS04230 dd3ad05d59fda1f849a1781c4259886c 378 PRINTS PR00207 Flagellin signature 37 54 6.4E-25 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS04230 dd3ad05d59fda1f849a1781c4259886c 378 PRINTS PR00207 Flagellin signature 111 134 6.4E-25 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS04230 dd3ad05d59fda1f849a1781c4259886c 378 SUPERFAMILY SSF64518 1 377 1.83E-93 T 11-11-2016 vm_RS04230 dd3ad05d59fda1f849a1781c4259886c 378 Gene3D G3DSA:1.20.1330.10 55 171 5.6E-59 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS04230 dd3ad05d59fda1f849a1781c4259886c 378 Gene3D G3DSA:1.20.1330.10 279 332 5.6E-59 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS04230 dd3ad05d59fda1f849a1781c4259886c 378 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 8.1E-42 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS04230 dd3ad05d59fda1f849a1781c4259886c 378 Pfam PF00700 Bacterial flagellin C-terminal helical region 292 376 3.0E-24 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS11460 95a54cb0caa122f125c7117399185cfc 606 Pfam PF02355 Protein export membrane protein 424 586 2.5E-19 T 11-11-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial vm_RS11460 95a54cb0caa122f125c7117399185cfc 606 PRINTS PR00702 Acriflavin resistance protein family signature 569 592 4.6E-5 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS11460 95a54cb0caa122f125c7117399185cfc 606 PRINTS PR00702 Acriflavin resistance protein family signature 440 463 4.6E-5 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS11460 95a54cb0caa122f125c7117399185cfc 606 PRINTS PR00702 Acriflavin resistance protein family signature 494 518 4.6E-5 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS11460 95a54cb0caa122f125c7117399185cfc 606 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 1 606 48.407 T 11-11-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 vm_RS11460 95a54cb0caa122f125c7117399185cfc 606 Pfam PF07549 SecD/SecF GG Motif 104 130 2.8E-7 T 11-11-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site vm_RS11460 95a54cb0caa122f125c7117399185cfc 606 SUPERFAMILY SSF82866 401 597 2.22E-44 T 11-11-2016 vm_RS11460 95a54cb0caa122f125c7117399185cfc 606 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 112 592 1.6E-149 T 11-11-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 vm_RS11460 95a54cb0caa122f125c7117399185cfc 606 Pfam PF13721 SecD export protein N-terminal TM region 1 92 2.1E-28 T 11-11-2016 IPR027398 SecD export protein N-terminal TM domain vm_RS11460 95a54cb0caa122f125c7117399185cfc 606 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 336 585 2.0E-82 T 11-11-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial vm_RS11460 95a54cb0caa122f125c7117399185cfc 606 Gene3D G3DSA:1.20.1640.10 427 597 3.7E-25 T 11-11-2016 vm_RS07725 ec3a120dc5af81b8bb12e3be886195c8 389 Gene3D G3DSA:1.20.140.10 196 388 1.1E-41 T 11-11-2016 vm_RS07725 ec3a120dc5af81b8bb12e3be886195c8 389 SUPERFAMILY SSF47203 232 382 2.26E-15 T 11-11-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 vm_RS07725 ec3a120dc5af81b8bb12e3be886195c8 389 Gene3D G3DSA:1.10.540.10 3 108 8.1E-35 T 11-11-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 vm_RS07725 ec3a120dc5af81b8bb12e3be886195c8 389 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 235 367 1.0E-40 T 11-11-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain vm_RS07725 ec3a120dc5af81b8bb12e3be886195c8 389 PIRSF PIRSF016578 1 389 1.1E-135 T 11-11-2016 vm_RS07725 ec3a120dc5af81b8bb12e3be886195c8 389 SUPERFAMILY SSF56645 14 200 3.93E-31 T 11-11-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 vm_RS07725 ec3a120dc5af81b8bb12e3be886195c8 389 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 19 100 2.7E-4 T 11-11-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 vm_RS07725 ec3a120dc5af81b8bb12e3be886195c8 389 Gene3D G3DSA:2.40.110.10 112 195 4.8E-23 T 11-11-2016 vm_RS08925 fd9568f333b660b16411b5f1ddc56453 440 SMART SM00267 264 430 5.2E-48 T 11-11-2016 IPR000160 GGDEF domain vm_RS08925 fd9568f333b660b16411b5f1ddc56453 440 Pfam PF00990 Diguanylate cyclase, GGDEF domain 274 426 2.2E-37 T 11-11-2016 IPR000160 GGDEF domain vm_RS08925 fd9568f333b660b16411b5f1ddc56453 440 SUPERFAMILY SSF55073 279 429 3.92E-41 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS08925 fd9568f333b660b16411b5f1ddc56453 440 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 272 429 1.2E-43 T 11-11-2016 IPR000160 GGDEF domain vm_RS08925 fd9568f333b660b16411b5f1ddc56453 440 SUPERFAMILY SSF49785 41 211 4.42E-7 T 11-11-2016 IPR008979 Galactose-binding domain-like vm_RS08925 fd9568f333b660b16411b5f1ddc56453 440 Gene3D G3DSA:3.30.70.270 276 429 1.1E-45 T 11-11-2016 vm_RS14285 4d53416f085c7e86a01bbd6f7e05b30b 412 SUPERFAMILY SSF82689 326 394 2.62E-5 T 11-11-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 vm_RS14285 4d53416f085c7e86a01bbd6f7e05b30b 412 SUPERFAMILY SSF50182 187 252 1.9E-10 T 11-11-2016 IPR010920 LSM domain vm_RS14285 4d53416f085c7e86a01bbd6f7e05b30b 412 Gene3D G3DSA:2.30.30.60 203 252 1.9E-7 T 11-11-2016 vm_RS14285 4d53416f085c7e86a01bbd6f7e05b30b 412 Pfam PF00924 Mechanosensitive ion channel 144 397 1.8E-52 T 11-11-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 vm_RS13020 93fa812876c54c599a2fcd1a8980a493 318 SUPERFAMILY SSF52440 2 122 9.78E-47 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS13020 93fa812876c54c599a2fcd1a8980a493 318 TIGRFAM TIGR01380 glut_syn: glutathione synthase 2 311 1.5E-139 T 11-11-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 vm_RS13020 93fa812876c54c599a2fcd1a8980a493 318 Gene3D G3DSA:3.30.1490.20 138 191 2.8E-31 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS13020 93fa812876c54c599a2fcd1a8980a493 318 SUPERFAMILY SSF56059 123 313 1.08E-59 T 11-11-2016 vm_RS13020 93fa812876c54c599a2fcd1a8980a493 318 Gene3D G3DSA:3.30.470.20 192 299 4.6E-50 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS13020 93fa812876c54c599a2fcd1a8980a493 318 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 124 296 3.4E-79 T 11-11-2016 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 vm_RS13020 93fa812876c54c599a2fcd1a8980a493 318 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 2 120 1.8E-48 T 11-11-2016 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 vm_RS13020 93fa812876c54c599a2fcd1a8980a493 318 Gene3D G3DSA:3.40.50.20 2 129 1.4E-56 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS13020 93fa812876c54c599a2fcd1a8980a493 318 Hamap MF_00162 Glutathione synthetase [gshB]. 1 316 178.242 T 11-11-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3 vm_RS11585 1adfdb64f9b6ce9519b5946604d31bac 430 Pfam PF05139 Erythromycin esterase 79 416 9.5E-13 T 11-11-2016 IPR007815 Erythromycin esterase GO:0046677 vm_RS11585 1adfdb64f9b6ce9519b5946604d31bac 430 Gene3D G3DSA:3.40.1660.10 297 424 7.5E-19 T 11-11-2016 vm_RS11585 1adfdb64f9b6ce9519b5946604d31bac 430 Gene3D G3DSA:3.40.1660.10 27 80 7.5E-19 T 11-11-2016 vm_RS11585 1adfdb64f9b6ce9519b5946604d31bac 430 SUPERFAMILY SSF159501 28 424 6.54E-56 T 11-11-2016 vm_RS07195 d731f7f894e5231345c68a0f176de005 434 Pfam PF13416 Bacterial extracellular solute-binding protein 45 367 2.5E-38 T 11-11-2016 vm_RS07195 d731f7f894e5231345c68a0f176de005 434 Gene3D G3DSA:3.40.190.10 146 353 7.9E-36 T 11-11-2016 vm_RS07195 d731f7f894e5231345c68a0f176de005 434 SUPERFAMILY SSF53850 26 421 9.78E-70 T 11-11-2016 vm_RS09535 ddf0217d74e364e6a5dfed5e9ead7726 405 Gene3D G3DSA:1.20.1250.20 11 201 9.8E-14 T 11-11-2016 vm_RS09535 ddf0217d74e364e6a5dfed5e9ead7726 405 Pfam PF07690 Major Facilitator Superfamily 21 340 3.8E-17 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 vm_RS09535 ddf0217d74e364e6a5dfed5e9ead7726 405 Gene3D G3DSA:1.20.1250.20 216 402 4.1E-11 T 11-11-2016 vm_RS09535 ddf0217d74e364e6a5dfed5e9ead7726 405 SUPERFAMILY SSF103473 10 401 1.44E-31 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS03195 fbf3c32bb60d2e587a1699c6b44835d3 259 Hamap MF_00592 Deoxyribose-phosphate aldolase [deoC]. 1 259 52.997 T 11-11-2016 IPR023649 Deoxyribose-phosphate aldolase type II GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180 vm_RS03195 fbf3c32bb60d2e587a1699c6b44835d3 259 SUPERFAMILY SSF51569 6 246 3.77E-82 T 11-11-2016 vm_RS03195 fbf3c32bb60d2e587a1699c6b44835d3 259 PIRSF PIRSF001357 5 254 4.6E-77 T 11-11-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 vm_RS03195 fbf3c32bb60d2e587a1699c6b44835d3 259 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 11 231 9.0E-82 T 11-11-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-71336 vm_RS03195 fbf3c32bb60d2e587a1699c6b44835d3 259 Pfam PF01791 DeoC/LacD family aldolase 11 240 7.0E-48 T 11-11-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 vm_RS03195 fbf3c32bb60d2e587a1699c6b44835d3 259 Gene3D G3DSA:3.20.20.70 5 253 3.2E-92 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS03195 fbf3c32bb60d2e587a1699c6b44835d3 259 SMART SM01133 10 245 9.5E-81 T 11-11-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-71336 vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 Pfam PF00270 DEAD/DEAH box helicase 97 243 1.9E-8 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 SMART SM00490 315 415 6.7E-15 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 SUPERFAMILY SSF52540 82 616 1.44E-114 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 Pfam PF11898 Domain of unknown function (DUF3418) 723 1307 1.4E-231 T 11-11-2016 IPR024590 RNA helicase HrpA, C-terminal vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 Pfam PF00271 Helicase conserved C-terminal domain 302 414 2.6E-10 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 SMART SM00487 82 269 5.1E-31 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 576 709 2.4E-18 T 11-11-2016 IPR011709 Domain of unknown function DUF1605 vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 SMART SM00382 102 395 5.2E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 23 1307 0.0 T 11-11-2016 IPR010222 RNA helicase HrpA GO:0004004 vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 Gene3D G3DSA:3.40.50.300 87 243 1.6E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 SMART SM00847 475 570 1.7E-38 T 11-11-2016 IPR007502 Helicase-associated domain GO:0004386 vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 Pfam PF04408 Helicase associated domain (HA2) 477 569 1.2E-18 T 11-11-2016 IPR007502 Helicase-associated domain GO:0004386 vm_RS07925 d016e37c7ff305e1d729d7a2f21eef85 1309 Gene3D G3DSA:3.40.50.300 283 427 1.1E-11 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07110 ded76c3271e42aa2489209e6c1938bed 233 SUPERFAMILY SSF52540 9 230 5.06E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07110 ded76c3271e42aa2489209e6c1938bed 233 Gene3D G3DSA:3.40.50.300 8 230 6.2E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07110 ded76c3271e42aa2489209e6c1938bed 233 Pfam PF00005 ABC transporter 29 177 8.0E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS07110 ded76c3271e42aa2489209e6c1938bed 233 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS07110 ded76c3271e42aa2489209e6c1938bed 233 SMART SM00382 38 224 2.3E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 SUPERFAMILY SSF82866 297 496 8.11E-50 T 11-11-2016 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 Gene3D G3DSA:3.30.2090.10 705 788 4.3E-11 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 Gene3D G3DSA:3.30.2090.10 189 270 4.3E-19 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 7.7E-64 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 7.7E-64 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 PRINTS PR00702 Acriflavin resistance protein family signature 606 620 7.7E-64 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 7.7E-64 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 PRINTS PR00702 Acriflavin resistance protein family signature 469 492 7.7E-64 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 PRINTS PR00702 Acriflavin resistance protein family signature 547 564 7.7E-64 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 7.7E-64 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 7.7E-64 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 PRINTS PR00702 Acriflavin resistance protein family signature 444 467 7.7E-64 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 SUPERFAMILY SSF82693 274 329 6.1E-16 T 11-11-2016 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 SUPERFAMILY SSF82693 144 187 6.1E-16 T 11-11-2016 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 Gene3D G3DSA:3.30.70.1430 45 140 1.2E-10 T 11-11-2016 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 SUPERFAMILY SSF82693 560 634 3.09E-5 T 11-11-2016 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 SUPERFAMILY SSF82714 189 270 9.42E-17 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 SUPERFAMILY SSF82714 705 788 1.7E-10 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 SUPERFAMILY SSF82693 46 132 4.97E-7 T 11-11-2016 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 SUPERFAMILY SSF82866 794 1012 2.09E-43 T 11-11-2016 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 2.4E-234 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 Gene3D G3DSA:1.10.3850.10 280 497 5.9E-60 T 11-11-2016 vm_RS06735 c8d16af75e8a0debf15baea21a15d38c 1024 Gene3D G3DSA:1.10.3850.10 803 1011 1.2E-55 T 11-11-2016 vm_RS03885 522ba705b84679b2531868fd59ee0578 434 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 8 28 - T 11-11-2016 IPR019776 Flagellar basal body rod protein, conserved site vm_RS03885 522ba705b84679b2531868fd59ee0578 434 Pfam PF07559 Flagellar basal body protein FlaE 181 314 2.1E-21 T 11-11-2016 IPR011491 Flagellar hook protein FlgE vm_RS03885 522ba705b84679b2531868fd59ee0578 434 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 2 416 7.8E-92 T 11-11-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G vm_RS03885 522ba705b84679b2531868fd59ee0578 434 Pfam PF00460 Flagella basal body rod protein 3 32 1.4E-9 T 11-11-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 vm_RS03885 522ba705b84679b2531868fd59ee0578 434 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 355 432 5.5E-15 T 11-11-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain vm_RS03885 522ba705b84679b2531868fd59ee0578 434 SUPERFAMILY SSF117143 78 395 3.66E-70 T 11-11-2016 vm_RS09070 a1fea28a871b46c3af5fd9b210a50615 165 Pfam PF00072 Response regulator receiver domain 6 126 1.1E-13 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09070 a1fea28a871b46c3af5fd9b210a50615 165 SUPERFAMILY SSF52172 1 150 1.07E-19 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS09070 a1fea28a871b46c3af5fd9b210a50615 165 Gene3D G3DSA:3.40.50.2300 6 137 1.7E-20 T 11-11-2016 vm_RS09070 a1fea28a871b46c3af5fd9b210a50615 165 SMART SM00448 4 125 5.7E-7 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 Gene3D G3DSA:1.10.8.60 298 365 9.2E-32 T 11-11-2016 vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 SUPERFAMILY SSF48295 363 466 3.66E-38 T 11-11-2016 IPR010921 Trp repressor/replication initiator GO:0043565 vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 Gene3D G3DSA:1.10.1750.10 366 466 8.0E-43 T 11-11-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 Pfam PF11638 DnaA N-terminal domain 4 64 1.5E-18 T 11-11-2016 IPR024633 DnaA N-terminal domain vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 Pfam PF00308 Bacterial dnaA protein 133 349 2.5E-98 T 11-11-2016 IPR013317 Chromosomal replication initiator protein DnaA vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 SMART SM00760 375 444 3.4E-45 T 11-11-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 465 7.4E-187 T 11-11-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 SUPERFAMILY SSF52540 132 343 7.91E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 Gene3D G3DSA:3.40.50.300 122 296 1.4E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 376 444 1.8E-32 T 11-11-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 SMART SM00382 164 377 4.5E-7 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 ProSitePatterns PS01008 DnaA protein signature. 425 444 - T 11-11-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 263 290 1.7E-54 T 11-11-2016 IPR020591 Chromosomal replication control, initiator DnaA-like vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 425 444 1.7E-54 T 11-11-2016 IPR020591 Chromosomal replication control, initiator DnaA-like vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 197 211 1.7E-54 T 11-11-2016 IPR020591 Chromosomal replication control, initiator DnaA-like vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 229 243 1.7E-54 T 11-11-2016 IPR020591 Chromosomal replication control, initiator DnaA-like vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 165 185 1.7E-54 T 11-11-2016 IPR020591 Chromosomal replication control, initiator DnaA-like vm_RS00005 60f800a7e00eb6923501cc5f30be16ae 467 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 466 34.634 T 11-11-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 vm_RS00515 2e2db7049d5d725d647b7fde3ed71745 205 Gene3D G3DSA:1.10.760.10 132 203 6.5E-29 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS00515 2e2db7049d5d725d647b7fde3ed71745 205 SUPERFAMILY SSF46626 114 203 4.28E-20 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS00515 2e2db7049d5d725d647b7fde3ed71745 205 Pfam PF00034 Cytochrome c 117 201 7.5E-8 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS00515 2e2db7049d5d725d647b7fde3ed71745 205 Pfam PF00034 Cytochrome c 31 103 1.8E-10 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS00515 2e2db7049d5d725d647b7fde3ed71745 205 PRINTS PR00605 Class IC cytochrome C signature 30 41 2.2E-5 T 11-11-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 vm_RS00515 2e2db7049d5d725d647b7fde3ed71745 205 PRINTS PR00605 Class IC cytochrome C signature 79 101 2.2E-5 T 11-11-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 vm_RS00515 2e2db7049d5d725d647b7fde3ed71745 205 Gene3D G3DSA:1.10.760.10 31 131 1.5E-29 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS00515 2e2db7049d5d725d647b7fde3ed71745 205 SUPERFAMILY SSF46626 6 105 2.91E-21 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS00515 2e2db7049d5d725d647b7fde3ed71745 205 PIRSF PIRSF000005 1 205 2.4E-63 T 11-11-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 vm_RS05345 297ce89d883489433423e4a9ac8bbdb5 225 Pfam PF02224 Cytidylate kinase 8 221 1.0E-79 T 11-11-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 vm_RS05345 297ce89d883489433423e4a9ac8bbdb5 225 SUPERFAMILY SSF52540 6 223 1.24E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05345 297ce89d883489433423e4a9ac8bbdb5 225 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 219 1.2E-86 T 11-11-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 vm_RS05345 297ce89d883489433423e4a9ac8bbdb5 225 Gene3D G3DSA:3.40.50.300 6 221 1.4E-77 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05345 297ce89d883489433423e4a9ac8bbdb5 225 Hamap MF_00238 Cytidylate kinase [cmk]. 6 224 34.961 T 11-11-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 vm_RS01570 9e173d89d998be6ab1b1687e7abd5179 734 Pfam PF00270 DEAD/DEAH box helicase 205 364 4.8E-14 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 vm_RS01570 9e173d89d998be6ab1b1687e7abd5179 734 SMART SM00490 493 590 6.0E-11 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS01570 9e173d89d998be6ab1b1687e7abd5179 734 Gene3D G3DSA:3.40.50.300 198 383 2.1E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01570 9e173d89d998be6ab1b1687e7abd5179 734 Gene3D G3DSA:3.40.50.300 457 633 1.1E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01570 9e173d89d998be6ab1b1687e7abd5179 734 SMART SM00487 197 396 7.0E-19 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS01570 9e173d89d998be6ab1b1687e7abd5179 734 SUPERFAMILY SSF52540 182 380 2.86E-39 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01570 9e173d89d998be6ab1b1687e7abd5179 734 SUPERFAMILY SSF52540 462 631 1.66E-26 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01570 9e173d89d998be6ab1b1687e7abd5179 734 TIGRFAM TIGR00595 priA: primosomal protein N' 222 730 1.1E-191 T 11-11-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 vm_RS01570 9e173d89d998be6ab1b1687e7abd5179 734 Hamap MF_00983 Probable primosomal protein N' [priA]. 8 733 24.856 T 11-11-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 vm_RS01570 9e173d89d998be6ab1b1687e7abd5179 734 Pfam PF00271 Helicase conserved C-terminal domain 515 589 1.8E-7 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS05755 81205b53020511d7ad2c075e42dc02c4 258 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 7 251 1.6E-83 T 11-11-2016 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein GO:0005215|GO:0006810|GO:0030288 vm_RS05755 81205b53020511d7ad2c075e42dc02c4 258 Gene3D G3DSA:3.40.190.10 116 211 3.9E-24 T 11-11-2016 vm_RS05755 81205b53020511d7ad2c075e42dc02c4 258 Gene3D G3DSA:3.40.190.10 213 255 6.8E-45 T 11-11-2016 vm_RS05755 81205b53020511d7ad2c075e42dc02c4 258 Gene3D G3DSA:3.40.190.10 23 112 6.8E-45 T 11-11-2016 vm_RS05755 81205b53020511d7ad2c075e42dc02c4 258 SMART SM00062 26 254 3.9E-67 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS05755 81205b53020511d7ad2c075e42dc02c4 258 SUPERFAMILY SSF53850 1 255 3.8E-69 T 11-11-2016 vm_RS05755 81205b53020511d7ad2c075e42dc02c4 258 SMART SM00079 26 253 3.4E-5 T 11-11-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 vm_RS05755 81205b53020511d7ad2c075e42dc02c4 258 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 252 6.8E-61 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS06200 4dc71f34dc74a29e88c2665ed626d27b 284 SUPERFAMILY SSF53697 98 264 1.91E-15 T 11-11-2016 vm_RS06200 4dc71f34dc74a29e88c2665ed626d27b 284 Pfam PF01418 Helix-turn-helix domain, rpiR family 12 78 3.9E-7 T 11-11-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 vm_RS06200 4dc71f34dc74a29e88c2665ed626d27b 284 Pfam PF01380 SIS domain 131 255 3.4E-10 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 vm_RS06200 4dc71f34dc74a29e88c2665ed626d27b 284 Gene3D G3DSA:1.10.10.10 11 79 6.7E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS06200 4dc71f34dc74a29e88c2665ed626d27b 284 Gene3D G3DSA:3.40.50.10490 104 263 7.1E-15 T 11-11-2016 vm_RS06200 4dc71f34dc74a29e88c2665ed626d27b 284 SUPERFAMILY SSF46689 11 80 8.24E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS06195 13f1aaa5ed8b0efdf10bad127979a9d0 70 SUPERFAMILY SSF50998 18 67 2.75E-5 T 11-11-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily vm_RS06195 13f1aaa5ed8b0efdf10bad127979a9d0 70 Gene3D G3DSA:2.140.10.10 19 68 1.6E-4 T 11-11-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain vm_RS03075 120d6f87526b8992bf1762b7f658eef4 1487 SUPERFAMILY SSF56235 13 429 3.58E-148 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS03075 120d6f87526b8992bf1762b7f658eef4 1487 Gene3D G3DSA:3.60.20.10 13 435 7.1E-172 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS03075 120d6f87526b8992bf1762b7f658eef4 1487 Pfam PF01645 Conserved region in glutamate synthase 794 1157 3.1E-152 T 11-11-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 vm_RS03075 120d6f87526b8992bf1762b7f658eef4 1487 Gene3D G3DSA:3.20.20.70 440 782 1.8E-100 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS03075 120d6f87526b8992bf1762b7f658eef4 1487 Gene3D G3DSA:2.160.20.60 1212 1465 5.2E-94 T 11-11-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 vm_RS03075 120d6f87526b8992bf1762b7f658eef4 1487 Pfam PF01493 GXGXG motif 1236 1420 8.6E-73 T 11-11-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 vm_RS03075 120d6f87526b8992bf1762b7f658eef4 1487 Pfam PF04898 Glutamate synthase central domain 458 738 1.8E-103 T 11-11-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 vm_RS03075 120d6f87526b8992bf1762b7f658eef4 1487 Gene3D G3DSA:3.20.20.70 817 1190 2.9E-165 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS03075 120d6f87526b8992bf1762b7f658eef4 1487 Pfam PF00310 Glutamine amidotransferases class-II 13 426 1.5E-178 T 11-11-2016 IPR017932 Glutamine amidotransferase type 2 domain vm_RS03075 120d6f87526b8992bf1762b7f658eef4 1487 SUPERFAMILY SSF69336 1213 1465 2.49E-87 T 11-11-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 vm_RS03075 120d6f87526b8992bf1762b7f658eef4 1487 SUPERFAMILY SSF51395 434 1191 6.23E-250 T 11-11-2016 vm_RS07355 8710427310a94fb1a134264883746339 553 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 451 462 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS07355 8710427310a94fb1a134264883746339 553 Gene3D G3DSA:3.30.70.20 170 222 2.5E-13 T 11-11-2016 vm_RS07355 8710427310a94fb1a134264883746339 553 Gene3D G3DSA:3.30.70.20 417 479 1.2E-18 T 11-11-2016 vm_RS07355 8710427310a94fb1a134264883746339 553 Gene3D G3DSA:3.30.70.20 223 238 1.2E-18 T 11-11-2016 vm_RS07355 8710427310a94fb1a134264883746339 553 Pfam PF12838 4Fe-4S dicluster domain 185 231 1.8E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain vm_RS07355 8710427310a94fb1a134264883746339 553 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 420 431 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS07355 8710427310a94fb1a134264883746339 553 SUPERFAMILY SSF54862 415 523 5.33E-39 T 11-11-2016 vm_RS07355 8710427310a94fb1a134264883746339 553 SUPERFAMILY SSF54862 143 238 5.33E-39 T 11-11-2016 vm_RS07355 8710427310a94fb1a134264883746339 553 Pfam PF13187 4Fe-4S dicluster domain 419 465 1.7E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain vm_RS09035 e927e19a1d5c17ab340a605fe3b47ebd 323 Hamap MF_01590 tRNA U34 carboxymethyltransferase [cmoB]. 13 322 53.991 T 11-11-2016 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 vm_RS09035 e927e19a1d5c17ab340a605fe3b47ebd 323 SUPERFAMILY SSF53335 91 323 9.8E-36 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS09035 e927e19a1d5c17ab340a605fe3b47ebd 323 Gene3D G3DSA:3.40.50.150 97 275 6.5E-27 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS09035 e927e19a1d5c17ab340a605fe3b47ebd 323 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 9 321 2.0E-146 T 11-11-2016 IPR010017 tRNA U34 carboxymethyltransferase GO:0002098|GO:0016765 vm_RS09035 e927e19a1d5c17ab340a605fe3b47ebd 323 Pfam PF08003 Protein of unknown function (DUF1698) 7 322 1.7E-172 T 11-11-2016 IPR027555 tRNA (mo5U34)-methyltransferase-like vm_RS01130 cfd52d954c17d346b112a34f820ff179 728 Gene3D G3DSA:2.150.10.10 302 419 2.9E-10 T 11-11-2016 IPR011049 Serralysin-like metalloprotease, C-terminal vm_RS01130 cfd52d954c17d346b112a34f820ff179 728 Pfam PF02839 Carbohydrate binding domain 683 721 1.4E-11 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS01130 cfd52d954c17d346b112a34f820ff179 728 SMART SM00495 681 724 1.3E-10 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS01130 cfd52d954c17d346b112a34f820ff179 728 SUPERFAMILY SSF51055 680 727 1.57E-15 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS01130 cfd52d954c17d346b112a34f820ff179 728 SUPERFAMILY SSF51120 173 201 6.8E-11 T 11-11-2016 IPR011049 Serralysin-like metalloprotease, C-terminal vm_RS01130 cfd52d954c17d346b112a34f820ff179 728 SUPERFAMILY SSF51120 299 394 6.8E-11 T 11-11-2016 IPR011049 Serralysin-like metalloprotease, C-terminal vm_RS01130 cfd52d954c17d346b112a34f820ff179 728 Gene3D G3DSA:2.10.10.20 681 727 2.4E-18 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 Gene3D G3DSA:3.10.20.30 268 363 1.5E-50 T 11-11-2016 IPR012675 Beta-grasp domain vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 2.9E-34 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 2.9E-34 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 2.9E-34 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 2.9E-34 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 SUPERFAMILY SSF81271 279 360 5.23E-37 T 11-11-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 363 45.537 T 11-11-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 Pfam PF06071 Protein of unknown function (DUF933) 279 362 9.4E-40 T 11-11-2016 IPR013029 Domain of unknown function DUF933 vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 Gene3D G3DSA:3.40.50.300 4 131 5.4E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 Gene3D G3DSA:3.40.50.300 201 267 5.4E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 SUPERFAMILY SSF52540 3 301 2.68E-83 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 Gene3D G3DSA:1.10.150.300 132 200 1.1E-25 T 11-11-2016 IPR023192 TGS-like domain vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 5.1E-169 T 11-11-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 Pfam PF01926 50S ribosome-binding GTPase 5 115 1.0E-21 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS04015 d2c93377a716b88f79cf5083dabd198b 363 PIRSF PIRSF006641 1 363 1.2E-157 T 11-11-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 vm_RS08130 c544bb664b4ba56f4b8a7a787ce32954 400 SUPERFAMILY SSF54506 4 183 2.83E-70 T 11-11-2016 vm_RS08130 c544bb664b4ba56f4b8a7a787ce32954 400 Gene3D G3DSA:3.10.310.10 5 193 2.9E-90 T 11-11-2016 vm_RS08130 c544bb664b4ba56f4b8a7a787ce32954 400 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 6 391 6.0E-222 T 11-11-2016 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 vm_RS08130 c544bb664b4ba56f4b8a7a787ce32954 400 Pfam PF04303 PrpF protein 7 389 3.1E-182 T 11-11-2016 IPR007400 PrpF protein vm_RS08130 c544bb664b4ba56f4b8a7a787ce32954 400 SUPERFAMILY SSF54506 186 391 4.24E-75 T 11-11-2016 vm_RS08130 c544bb664b4ba56f4b8a7a787ce32954 400 Gene3D G3DSA:3.10.310.10 194 371 1.9E-76 T 11-11-2016 vm_RS00910 199988bee2e903ed64724832faace24f 117 Pfam PF02501 Type II secretion system (T2SS), protein I 40 115 1.1E-22 T 11-11-2016 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 vm_RS00910 199988bee2e903ed64724832faace24f 117 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 24 8.3E-8 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS00910 199988bee2e903ed64724832faace24f 117 SUPERFAMILY SSF54523 37 115 9.42E-24 T 11-11-2016 vm_RS00910 199988bee2e903ed64724832faace24f 117 TIGRFAM TIGR01707 gspI: type II secretion system protein I 6 103 1.8E-42 T 11-11-2016 IPR010052 Type II secretion system protein I GO:0008565|GO:0015627|GO:0015628 vm_RS00910 199988bee2e903ed64724832faace24f 117 Gene3D G3DSA:3.30.1300.30 32 117 1.3E-30 T 11-11-2016 vm_RS00910 199988bee2e903ed64724832faace24f 117 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS00910 199988bee2e903ed64724832faace24f 117 Pfam PF13633 Prokaryotic N-terminal methylation site 4 29 9.0E-10 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 SUPERFAMILY SSF53223 1 122 1.73E-39 T 11-11-2016 vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 1.5E-87 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.5E-87 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 1.5E-87 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.5E-87 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 1.5E-87 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 1.5E-87 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 1.5E-87 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 Gene3D G3DSA:3.40.192.10 7 140 8.7E-50 T 11-11-2016 vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 SUPERFAMILY SSF51735 123 280 9.64E-51 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 37.611 T 11-11-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 260 268 - T 11-11-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 6 121 1.8E-38 T 11-11-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 Gene3D G3DSA:3.40.50.720 141 264 2.0E-51 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS05205 7aab3ac28f8324a6360375327cf01baa 286 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 1.2E-67 T 11-11-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|Reactome: R-HSA-196757 vm_RS01665 6bf00e32d447bf5c8f8d8f5ad6e5d171 127 PIRSF PIRSF000180 1 127 3.6E-56 T 11-11-2016 IPR003510 Fumarate reductase, subunit C GO:0016020 vm_RS01665 6bf00e32d447bf5c8f8d8f5ad6e5d171 127 Gene3D G3DSA:1.20.1300.10 1 127 1.4E-53 T 11-11-2016 vm_RS01665 6bf00e32d447bf5c8f8d8f5ad6e5d171 127 ProDom PD015900 FUMARATE MEMBRANE REDUCTASE C SUBUNIT TRANSMEMBRANE INNER HYDROPHOBIC REDUCTASE POLYPEPTIDE 7 127 5.0E-52 T 11-11-2016 IPR003510 Fumarate reductase, subunit C GO:0016020 vm_RS01665 6bf00e32d447bf5c8f8d8f5ad6e5d171 127 Hamap MF_00708 Fumarate reductase subunit C [frdC]. 1 127 27.349 T 11-11-2016 IPR003510 Fumarate reductase, subunit C GO:0016020 vm_RS01665 6bf00e32d447bf5c8f8d8f5ad6e5d171 127 Pfam PF02300 Fumarate reductase subunit C 2 127 1.5E-49 T 11-11-2016 IPR003510 Fumarate reductase, subunit C GO:0016020 vm_RS01665 6bf00e32d447bf5c8f8d8f5ad6e5d171 127 SUPERFAMILY SSF81343 1 127 6.98E-53 T 11-11-2016 vm_RS13495 ad19b52df1137e6fdb004ac939aac7a9 408 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 167 195 - T 11-11-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 vm_RS13495 ad19b52df1137e6fdb004ac939aac7a9 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 167 195 1.3E-9 T 11-11-2016 IPR003004 GspF/PilC family vm_RS13495 ad19b52df1137e6fdb004ac939aac7a9 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 68 80 1.3E-9 T 11-11-2016 IPR003004 GspF/PilC family vm_RS13495 ad19b52df1137e6fdb004ac939aac7a9 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 370 384 1.3E-9 T 11-11-2016 IPR003004 GspF/PilC family vm_RS13495 ad19b52df1137e6fdb004ac939aac7a9 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 386 405 1.3E-9 T 11-11-2016 IPR003004 GspF/PilC family vm_RS13495 ad19b52df1137e6fdb004ac939aac7a9 408 Pfam PF00482 Type II secretion system (T2SS), protein F 72 195 4.7E-31 T 11-11-2016 IPR018076 Type II secretion system F domain vm_RS13495 ad19b52df1137e6fdb004ac939aac7a9 408 Pfam PF00482 Type II secretion system (T2SS), protein F 275 397 9.5E-27 T 11-11-2016 IPR018076 Type II secretion system F domain vm_RS10370 b5d186650fa77eb0dcee94f9b8df3720 156 SUPERFAMILY SSF75217 2 154 2.2E-50 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases vm_RS10370 b5d186650fa77eb0dcee94f9b8df3720 156 PIRSF PIRSF004505 1 155 1.5E-43 T 11-11-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS10370 b5d186650fa77eb0dcee94f9b8df3720 156 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 27.853 T 11-11-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS10370 b5d186650fa77eb0dcee94f9b8df3720 156 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 156 1.8E-77 T 11-11-2016 IPR016051 Ribosomal RNA large subunit methyltransferase H GO:0005737|GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS10370 b5d186650fa77eb0dcee94f9b8df3720 156 Gene3D G3DSA:3.40.1280.10 2 155 5.9E-55 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal vm_RS10370 b5d186650fa77eb0dcee94f9b8df3720 156 Pfam PF02590 Predicted SPOUT methyltransferase 2 154 9.1E-49 T 11-11-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 SUPERFAMILY SSF53633 13 262 8.25E-67 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 TIGRFAM TIGR01027 proB: glutamate 5-kinase 12 374 1.9E-147 T 11-11-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 Hamap MF_00456 Glutamate 5-kinase [proB]. 12 265 35.982 T 11-11-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 Gene3D G3DSA:3.40.1160.10 7 265 1.2E-58 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 PIRSF PIRSF000729 7 376 5.3E-137 T 11-11-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 Pfam PF00696 Amino acid kinase family 13 241 5.1E-43 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 SMART SM00359 284 367 2.2E-20 T 11-11-2016 IPR002478 PUA domain GO:0003723 vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 Gene3D G3DSA:2.30.130.10 282 373 2.9E-27 T 11-11-2016 IPR015947 PUA-like domain vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 PRINTS PR00474 Glutamate 5-kinase family signature 49 63 5.0E-55 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 PRINTS PR00474 Glutamate 5-kinase family signature 123 144 5.0E-55 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 PRINTS PR00474 Glutamate 5-kinase family signature 155 182 5.0E-55 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 PRINTS PR00474 Glutamate 5-kinase family signature 216 236 5.0E-55 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 PRINTS PR00474 Glutamate 5-kinase family signature 83 111 5.0E-55 T 11-11-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 Reactome: R-HSA-70614 vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 SUPERFAMILY SSF88697 284 374 1.99E-24 T 11-11-2016 IPR015947 PUA-like domain vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 Pfam PF01472 PUA domain 284 358 3.6E-24 T 11-11-2016 IPR002478 PUA domain GO:0003723 vm_RS03540 538a59f3891d7f5d51eef0a15ed7e7df 377 ProSitePatterns PS00902 Glutamate 5-kinase signature. 214 231 - T 11-11-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 Pfam PF00512 His Kinase A (phospho-acceptor) domain 353 418 1.5E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 SUPERFAMILY SSF52172 597 725 4.55E-31 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS05910 b0895d9a3f299195be73442b70edc629 733 SMART SM00387 465 580 1.5E-38 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05910 b0895d9a3f299195be73442b70edc629 733 SUPERFAMILY SSF55874 407 581 1.06E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05910 b0895d9a3f299195be73442b70edc629 733 Pfam PF02743 Cache domain 43 237 6.4E-12 T 11-11-2016 IPR033479 Double Cache domain 1 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 Gene3D G3DSA:3.30.565.10 405 580 2.4E-46 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05910 b0895d9a3f299195be73442b70edc629 733 Pfam PF00072 Response regulator receiver domain 601 713 8.4E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 Gene3D G3DSA:1.10.287.130 347 404 1.0E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 Gene3D G3DSA:3.30.450.20 128 198 2.1E-9 T 11-11-2016 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 519 1.7E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 533 1.7E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 PRINTS PR00344 Bacterial sensor protein C-terminal signature 564 577 1.7E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 PRINTS PR00344 Bacterial sensor protein C-terminal signature 540 558 1.7E-17 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 Gene3D G3DSA:3.40.50.2300 597 717 8.1E-34 T 11-11-2016 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 SMART SM00388 353 418 6.0E-22 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 SMART SM00448 599 713 1.6E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 SUPERFAMILY SSF47384 341 419 2.75E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05910 b0895d9a3f299195be73442b70edc629 733 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 465 579 5.8E-30 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS03680 c7178e177f0ab144dad0e2331b91e389 1159 Pfam PF01336 OB-fold nucleic acid binding domain 999 1071 1.3E-8 T 11-11-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 vm_RS03680 c7178e177f0ab144dad0e2331b91e389 1159 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 292 735 4.5E-173 T 11-11-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS03680 c7178e177f0ab144dad0e2331b91e389 1159 Gene3D G3DSA:3.20.20.140 5 257 5.2E-20 T 11-11-2016 vm_RS03680 c7178e177f0ab144dad0e2331b91e389 1159 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1030 0.0 T 11-11-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS03680 c7178e177f0ab144dad0e2331b91e389 1159 Gene3D G3DSA:1.10.150.280 825 882 1.3E-6 T 11-11-2016 vm_RS03680 c7178e177f0ab144dad0e2331b91e389 1159 Pfam PF14579 Helix-hairpin-helix motif 808 897 1.4E-25 T 11-11-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS03680 c7178e177f0ab144dad0e2331b91e389 1159 Pfam PF02811 PHP domain 8 172 4.7E-45 T 11-11-2016 IPR004013 PHP domain GO:0003824 vm_RS03680 c7178e177f0ab144dad0e2331b91e389 1159 SUPERFAMILY SSF89550 5 263 1.57E-14 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 vm_RS03680 c7178e177f0ab144dad0e2331b91e389 1159 SMART SM00481 7 74 4.1E-26 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 vm_RS03680 c7178e177f0ab144dad0e2331b91e389 1159 Gene3D G3DSA:2.40.50.140 988 1076 1.7E-8 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 202 219 - T 11-11-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 Gene3D G3DSA:3.30.420.40 204 395 1.4E-76 T 11-11-2016 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 PRINTS PR00471 Acetate kinase family signature 172 185 2.7E-45 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 PRINTS PR00471 Acetate kinase family signature 298 311 2.7E-45 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 PRINTS PR00471 Acetate kinase family signature 377 389 2.7E-45 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 PRINTS PR00471 Acetate kinase family signature 321 337 2.7E-45 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 PRINTS PR00471 Acetate kinase family signature 5 16 2.7E-45 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 PRINTS PR00471 Acetate kinase family signature 202 223 2.7E-45 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 SUPERFAMILY SSF53067 3 195 1.29E-66 T 11-11-2016 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 TIGRFAM TIGR00016 ackA: acetate kinase 2 396 4.5E-173 T 11-11-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 11-11-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 Gene3D G3DSA:3.30.420.40 88 203 1.1E-10 T 11-11-2016 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 Pfam PF00871 Acetokinase family 5 390 1.8E-167 T 11-11-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 Hamap MF_00020 Acetate kinase [ackA]. 1 398 192.333 T 11-11-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 SUPERFAMILY SSF53067 155 396 4.68E-87 T 11-11-2016 vm_RS09360 7092a4db712e31b8a4540ebbaeafc848 398 PIRSF PIRSF000722 1 398 3.4E-149 T 11-11-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 SUPERFAMILY SSF56553 53 179 5.06E-41 T 11-11-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 Gene3D G3DSA:3.30.1360.10 9 57 3.0E-10 T 11-11-2016 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 Gene3D G3DSA:1.10.150.20 245 329 7.2E-38 T 11-11-2016 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 257 330 2.0E-36 T 11-11-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 246 309 5.6E-24 T 11-11-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 229 2.4E-23 T 11-11-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 Gene3D G3DSA:2.170.120.12 58 178 3.2E-41 T 11-11-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 62 157 2.6E-24 T 11-11-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 SMART SM00662 23 235 4.9E-104 T 11-11-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 318 34.977 T 11-11-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 SUPERFAMILY SSF47789 252 326 1.44E-25 T 11-11-2016 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 317 4.0E-112 T 11-11-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 SUPERFAMILY SSF55257 7 53 3.93E-30 T 11-11-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS02080 696bbb50d9c3c3026d08c51e542486e0 330 SUPERFAMILY SSF55257 180 234 3.93E-30 T 11-11-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 8 190 1.4E-19 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Gene3D G3DSA:3.30.565.10 699 842 4.9E-46 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 SUPERFAMILY SSF55874 675 842 2.62E-46 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 SUPERFAMILY SSF47384 607 687 4.32E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 SUPERFAMILY SSF53850 226 441 2.36E-14 T 11-11-2016 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 SMART SM00388 621 686 9.0E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Gene3D G3DSA:3.40.50.2300 919 1026 1.6E-33 T 11-11-2016 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 PRINTS PR00344 Bacterial sensor protein C-terminal signature 769 783 3.9E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 PRINTS PR00344 Bacterial sensor protein C-terminal signature 804 822 3.9E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 PRINTS PR00344 Bacterial sensor protein C-terminal signature 787 797 3.9E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 PRINTS PR00344 Bacterial sensor protein C-terminal signature 828 841 3.9E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 SMART SM00387 733 844 3.0E-39 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 SMART SM00062 6 210 8.7E-5 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Gene3D G3DSA:1.10.287.130 626 682 4.5E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 SMART SM00448 918 1032 5.3E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 734 841 1.3E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Pfam PF00072 Response regulator receiver domain 921 1031 3.7E-21 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Pfam PF00512 His Kinase A (phospho-acceptor) domain 622 685 2.5E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 SUPERFAMILY SSF53850 8 190 7.5E-24 T 11-11-2016 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 SUPERFAMILY SSF47226 1016 1117 6.02E-8 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Gene3D G3DSA:1.20.120.160 1027 1142 5.2E-9 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Gene3D G3DSA:3.30.450.20 587 625 1.7E-5 T 11-11-2016 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 SUPERFAMILY SSF52172 919 1039 4.41E-32 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Gene3D G3DSA:3.40.190.10 401 438 4.3E-8 T 11-11-2016 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Gene3D G3DSA:3.40.190.10 229 313 4.3E-8 T 11-11-2016 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Gene3D G3DSA:3.40.190.10 8 76 7.2E-12 T 11-11-2016 vm_RS06670 4e168c9ebccb938609de036c9a72aab4 1147 Gene3D G3DSA:3.40.190.10 167 190 7.2E-12 T 11-11-2016 vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 SMART SM00316 649 720 6.0E-25 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 SMART SM00732 326 424 1.6E-39 T 11-11-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 SUPERFAMILY SSF50249 638 723 2.83E-24 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 SUPERFAMILY SSF53098 322 469 4.55E-51 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 Pfam PF09371 Tex-like protein N-terminal domain 9 193 1.2E-71 T 11-11-2016 IPR018974 Tex-like protein, N-terminal vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 Gene3D G3DSA:1.10.3500.10 110 322 3.8E-102 T 11-11-2016 IPR023323 Tex-like domain vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 Gene3D G3DSA:1.10.3500.10 451 498 3.8E-102 T 11-11-2016 IPR023323 Tex-like domain vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 Pfam PF12836 Helix-hairpin-helix motif 491 555 3.5E-28 T 11-11-2016 vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 Gene3D G3DSA:1.10.150.310 499 630 4.9E-47 T 11-11-2016 IPR023097 Tex RuvX-like domain vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 Gene3D G3DSA:1.10.10.650 2 109 3.3E-47 T 11-11-2016 IPR023319 Tex-like protein, HTH domain vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 SUPERFAMILY SSF47781 470 557 2.67E-27 T 11-11-2016 IPR010994 RuvA domain 2-like vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 Gene3D G3DSA:2.40.50.140 633 720 2.1E-28 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 Pfam PF00575 S1 RNA binding domain 648 720 2.8E-21 T 11-11-2016 IPR003029 S1 domain GO:0003676 vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 Gene3D G3DSA:3.30.420.140 327 450 1.2E-52 T 11-11-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 SUPERFAMILY SSF158832 4 321 2.88E-122 T 11-11-2016 vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 Pfam PF16921 Tex protein YqgF-like domain 327 451 6.9E-56 T 11-11-2016 IPR032639 Tex protein, YqgF-like domain vm_RS00970 a709f030e9bad6976fd067f14f91aa09 773 SUPERFAMILY SSF47781 560 632 1.96E-19 T 11-11-2016 IPR010994 RuvA domain 2-like vm_RS11550 f898f571726a1c18dbc1a9a60bd00abf 500 Pfam PF02541 Ppx/GppA phosphatase family 24 306 2.7E-86 T 11-11-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 vm_RS11550 f898f571726a1c18dbc1a9a60bd00abf 500 Gene3D G3DSA:3.30.420.40 4 129 1.7E-43 T 11-11-2016 vm_RS11550 f898f571726a1c18dbc1a9a60bd00abf 500 PIRSF PIRSF001267 1 500 4.8E-204 T 11-11-2016 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40 vm_RS11550 f898f571726a1c18dbc1a9a60bd00abf 500 SUPERFAMILY SSF53067 11 131 1.88E-36 T 11-11-2016 vm_RS11550 f898f571726a1c18dbc1a9a60bd00abf 500 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 10 304 5.0E-104 T 11-11-2016 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 vm_RS11550 f898f571726a1c18dbc1a9a60bd00abf 500 Gene3D G3DSA:3.30.420.150 130 307 3.5E-56 T 11-11-2016 vm_RS11550 f898f571726a1c18dbc1a9a60bd00abf 500 SUPERFAMILY SSF53067 135 307 2.2E-47 T 11-11-2016 vm_RS11550 f898f571726a1c18dbc1a9a60bd00abf 500 SUPERFAMILY SSF109604 311 499 1.26E-46 T 11-11-2016 vm_RS14830 0da468bd337d8368d12e9a1b4a24f5bb 467 SMART SM00382 142 334 2.8E-4 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS14830 0da468bd337d8368d12e9a1b4a24f5bb 467 Gene3D G3DSA:1.10.1140.10 352 467 4.2E-50 T 11-11-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14830 0da468bd337d8368d12e9a1b4a24f5bb 467 Gene3D G3DSA:3.40.50.300 76 350 3.3E-107 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14830 0da468bd337d8368d12e9a1b4a24f5bb 467 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 340 349 - T 11-11-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14830 0da468bd337d8368d12e9a1b4a24f5bb 467 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 467 55.945 T 11-11-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201 vm_RS14830 0da468bd337d8368d12e9a1b4a24f5bb 467 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 73 2.6E-19 T 11-11-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14830 0da468bd337d8368d12e9a1b4a24f5bb 467 SUPERFAMILY SSF52540 77 355 5.33E-87 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14830 0da468bd337d8368d12e9a1b4a24f5bb 467 SUPERFAMILY SSF47917 352 466 3.4E-50 T 11-11-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14830 0da468bd337d8368d12e9a1b4a24f5bb 467 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 130 349 2.5E-61 T 11-11-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14830 0da468bd337d8368d12e9a1b4a24f5bb 467 Gene3D G3DSA:2.40.10.170 2 75 1.2E-29 T 11-11-2016 vm_RS14830 0da468bd337d8368d12e9a1b4a24f5bb 467 SUPERFAMILY SSF50615 1 75 1.65E-24 T 11-11-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14830 0da468bd337d8368d12e9a1b4a24f5bb 467 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 467 1.8E-247 T 11-11-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210|Reactome: R-HSA-2151201 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 Pfam PF00391 PEP-utilising enzyme, mobile domain 152 222 4.9E-20 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 PIRSF PIRSF000732 1 573 4.6E-221 T 11-11-2016 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 SUPERFAMILY SSF52009 125 243 5.49E-34 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 Gene3D G3DSA:3.50.30.10 133 254 2.5E-38 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 447 462 2.6E-30 T 11-11-2016 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 293 312 2.6E-30 T 11-11-2016 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 464 479 2.6E-30 T 11-11-2016 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 500 512 2.6E-30 T 11-11-2016 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 SUPERFAMILY SSF47831 24 143 3.4E-33 T 11-11-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 Pfam PF05524 PEP-utilising enzyme, N-terminal 4 126 1.3E-32 T 11-11-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 250 541 4.7E-124 T 11-11-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 2 565 1.9E-249 T 11-11-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 184 195 - T 11-11-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 Gene3D G3DSA:1.10.274.10 23 132 1.2E-37 T 11-11-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 447 465 - T 11-11-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 SUPERFAMILY SSF51621 249 549 1.62E-110 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS10305 167fb45c4be3f6175921dc3dbc517a3e 573 Gene3D G3DSA:3.20.20.60 255 571 2.4E-114 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS12025 06348d34c7cccfaba4db9ab85cf21be7 157 Pfam PF03449 Transcription elongation factor, N-terminal 4 73 1.1E-24 T 11-11-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 vm_RS12025 06348d34c7cccfaba4db9ab85cf21be7 157 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 47 - T 11-11-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 vm_RS12025 06348d34c7cccfaba4db9ab85cf21be7 157 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 82 156 1.0E-26 T 11-11-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 vm_RS12025 06348d34c7cccfaba4db9ab85cf21be7 157 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 120 136 - T 11-11-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 vm_RS12025 06348d34c7cccfaba4db9ab85cf21be7 157 SUPERFAMILY SSF54534 81 156 8.11E-24 T 11-11-2016 vm_RS12025 06348d34c7cccfaba4db9ab85cf21be7 157 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 154 3.4E-52 T 11-11-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 vm_RS12025 06348d34c7cccfaba4db9ab85cf21be7 157 SUPERFAMILY SSF46557 2 75 3.27E-25 T 11-11-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 vm_RS12025 06348d34c7cccfaba4db9ab85cf21be7 157 PIRSF PIRSF006092 1 157 2.2E-46 T 11-11-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 vm_RS12025 06348d34c7cccfaba4db9ab85cf21be7 157 Gene3D G3DSA:3.10.50.30 80 156 1.8E-30 T 11-11-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 vm_RS12025 06348d34c7cccfaba4db9ab85cf21be7 157 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 155 32.129 T 11-11-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 vm_RS12025 06348d34c7cccfaba4db9ab85cf21be7 157 Gene3D G3DSA:1.10.287.180 1 74 2.7E-28 T 11-11-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 vm_RS12290 4adf52355a0c5a844cc1eff5419ae576 211 Gene3D G3DSA:3.40.30.10 7 100 2.0E-29 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS12290 4adf52355a0c5a844cc1eff5419ae576 211 Pfam PF00043 Glutathione S-transferase, C-terminal domain 122 194 2.5E-6 T 11-11-2016 IPR004046 Glutathione S-transferase, C-terminal vm_RS12290 4adf52355a0c5a844cc1eff5419ae576 211 SUPERFAMILY SSF52833 11 110 5.91E-23 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS12290 4adf52355a0c5a844cc1eff5419ae576 211 Pfam PF13417 Glutathione S-transferase, N-terminal domain 13 87 1.5E-17 T 11-11-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 vm_RS12290 4adf52355a0c5a844cc1eff5419ae576 211 SUPERFAMILY SSF47616 82 208 1.56E-23 T 11-11-2016 IPR010987 Glutathione S-transferase, C-terminal-like vm_RS12290 4adf52355a0c5a844cc1eff5419ae576 211 Gene3D G3DSA:1.20.1050.10 101 208 4.4E-15 T 11-11-2016 IPR010987 Glutathione S-transferase, C-terminal-like vm_RS09990 787ed9b118492345c62736024a395c6b 113 SUPERFAMILY SSF47226 3 111 6.54E-20 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS09990 787ed9b118492345c62736024a395c6b 113 Gene3D G3DSA:1.20.120.160 3 112 8.8E-25 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS09990 787ed9b118492345c62736024a395c6b 113 Pfam PF01627 Hpt domain 25 102 4.7E-8 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS10525 358a18151300de2778d9c28632250abd 413 Gene3D G3DSA:1.20.5.100 206 235 4.2E-6 T 11-11-2016 vm_RS10525 358a18151300de2778d9c28632250abd 413 SUPERFAMILY SSF52413 306 412 9.68E-23 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 vm_RS10525 358a18151300de2778d9c28632250abd 413 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 4 188 7.2E-59 T 11-11-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 vm_RS10525 358a18151300de2778d9c28632250abd 413 PIRSF PIRSF500136 1 413 5.7E-147 T 11-11-2016 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 vm_RS10525 358a18151300de2778d9c28632250abd 413 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 293 2.1E-26 T 11-11-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 vm_RS10525 358a18151300de2778d9c28632250abd 413 SUPERFAMILY SSF51735 4 199 2.63E-46 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS10525 358a18151300de2778d9c28632250abd 413 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 4 410 7.8E-124 T 11-11-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 vm_RS10525 358a18151300de2778d9c28632250abd 413 SMART SM00984 316 413 1.4E-21 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 vm_RS10525 358a18151300de2778d9c28632250abd 413 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 316 412 3.5E-21 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 vm_RS10525 358a18151300de2778d9c28632250abd 413 SUPERFAMILY SSF48179 206 299 5.78E-29 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 vm_RS10525 358a18151300de2778d9c28632250abd 413 Gene3D G3DSA:3.40.50.720 4 202 4.2E-59 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS10525 358a18151300de2778d9c28632250abd 413 PIRSF PIRSF000124 3 413 3.1E-82 T 11-11-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 vm_RS10525 358a18151300de2778d9c28632250abd 413 Gene3D G3DSA:3.40.50.720 238 412 1.4E-47 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS07755 19b06ed6b755988a6912949d6740a07b 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 11-11-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 vm_RS07755 19b06ed6b755988a6912949d6740a07b 506 SUPERFAMILY SSF53720 16 494 1.44E-162 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 vm_RS07755 19b06ed6b755988a6912949d6740a07b 506 TIGRFAM TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 25 506 4.3E-264 T 11-11-2016 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase GO:0018480|GO:1901023 vm_RS07755 19b06ed6b755988a6912949d6740a07b 506 Pfam PF00171 Aldehyde dehydrogenase family 33 492 3.1E-171 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 vm_RS07755 19b06ed6b755988a6912949d6740a07b 506 Gene3D G3DSA:3.40.309.10 281 467 1.6E-69 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 vm_RS07755 19b06ed6b755988a6912949d6740a07b 506 Gene3D G3DSA:3.40.605.10 24 280 5.2E-90 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 vm_RS08245 e187a678bba76f37755075d5d8fd513d 470 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 35 462 6.3E-76 T 11-11-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 vm_RS08245 e187a678bba76f37755075d5d8fd513d 470 Pfam PF00939 Sodium:sulfate symporter transmembrane region 5 462 7.5E-48 T 11-11-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 vm_RS08245 e187a678bba76f37755075d5d8fd513d 470 PIRSF PIRSF002457 1 470 1.2E-108 T 11-11-2016 IPR030676 Citrate carrier CitT-related vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 4 467 7.3E-269 T 11-11-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 3 467 60.645 T 11-11-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 Pfam PF00330 Aconitase family (aconitate hydratase) 9 459 2.2E-157 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 Gene3D G3DSA:3.30.499.10 3 160 1.2E-23 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 ProSitePatterns PS01244 Aconitase family signature 2. 401 414 - T 11-11-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 PRINTS PR00415 Aconitase family signature 197 210 6.2E-51 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 PRINTS PR00415 Aconitase family signature 345 356 6.2E-51 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 PRINTS PR00415 Aconitase family signature 110 118 6.2E-51 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 PRINTS PR00415 Aconitase family signature 135 150 6.2E-51 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 PRINTS PR00415 Aconitase family signature 401 414 6.2E-51 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 PRINTS PR00415 Aconitase family signature 84 97 6.2E-51 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 PRINTS PR00415 Aconitase family signature 288 302 6.2E-51 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 PRINTS PR00415 Aconitase family signature 121 134 6.2E-51 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 PRINTS PR00415 Aconitase family signature 211 224 6.2E-51 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 Gene3D G3DSA:3.30.499.10 337 467 5.5E-64 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 SUPERFAMILY SSF53732 5 466 3.79E-167 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 ProSitePatterns PS00450 Aconitase family signature 1. 341 357 - T 11-11-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 vm_RS02505 c0e7d3ea56d95f3afa6809dacf8a9c9c 467 Gene3D G3DSA:3.40.1060.10 168 282 3.1E-40 T 11-11-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 Pfam PF00378 Enoyl-CoA hydratase/isomerase 26 213 3.2E-37 T 11-11-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 Gene3D G3DSA:1.10.1040.10 624 704 3.4E-21 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 Gene3D G3DSA:3.40.50.720 309 498 1.9E-52 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 SUPERFAMILY SSF51735 313 495 3.59E-48 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 TIGRFAM TIGR02440 FadJ: fatty oxidation complex, alpha subunit FadJ 6 707 0.0 T 11-11-2016 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 SUPERFAMILY SSF52096 5 304 2.55E-66 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 494 519 - T 11-11-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 SUPERFAMILY SSF48179 497 606 1.19E-27 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 Gene3D G3DSA:1.10.1040.10 499 591 2.1E-26 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 SUPERFAMILY SSF48179 615 707 1.87E-26 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 316 495 9.2E-55 T 11-11-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 Hamap MF_01617 Fatty acid oxidation complex subunit alpha [fadJ]. 1 707 52.078 T 11-11-2016 IPR012802 Fatty oxidation complex, alpha subunit FadJ GO:0003857|GO:0004300|GO:0006635|GO:0008692|GO:0051287|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 619 693 1.1E-5 T 11-11-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 497 590 1.6E-24 T 11-11-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 106 126 - T 11-11-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 Gene3D G3DSA:3.90.226.10 3 195 2.5E-62 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS09875 5132474508acd92ff8daeb2d3708d774 708 Gene3D G3DSA:3.90.226.10 234 274 2.5E-62 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS14840 6e130aff15bf910bc314bce312d6a598 513 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 4.6E-44 T 11-11-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14840 6e130aff15bf910bc314bce312d6a598 513 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 375 2.4E-73 T 11-11-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14840 6e130aff15bf910bc314bce312d6a598 513 Gene3D G3DSA:2.40.30.20 1 93 4.3E-29 T 11-11-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 vm_RS14840 6e130aff15bf910bc314bce312d6a598 513 SUPERFAMILY SSF47917 383 511 3.66E-45 T 11-11-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14840 6e130aff15bf910bc314bce312d6a598 513 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 11-11-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14840 6e130aff15bf910bc314bce312d6a598 513 SUPERFAMILY SSF50615 10 94 1.08E-25 T 11-11-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14840 6e130aff15bf910bc314bce312d6a598 513 Gene3D G3DSA:1.20.150.20 383 510 5.8E-47 T 11-11-2016 vm_RS14840 6e130aff15bf910bc314bce312d6a598 513 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 1 512 49.615 T 11-11-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 vm_RS14840 6e130aff15bf910bc314bce312d6a598 513 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 2 512 3.4E-251 T 11-11-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 vm_RS14840 6e130aff15bf910bc314bce312d6a598 513 SUPERFAMILY SSF52540 96 381 1.45E-95 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14840 6e130aff15bf910bc314bce312d6a598 513 Gene3D G3DSA:3.40.50.300 94 382 1.7E-113 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14840 6e130aff15bf910bc314bce312d6a598 513 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 28 92 2.3E-13 T 11-11-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS05095 85784b46800e1aeabf9b09c3487b5545 570 Gene3D G3DSA:3.40.50.970 10 184 3.9E-42 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS05095 85784b46800e1aeabf9b09c3487b5545 570 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 12 141 3.1E-27 T 11-11-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 vm_RS05095 85784b46800e1aeabf9b09c3487b5545 570 SUPERFAMILY SSF52518 9 190 5.03E-28 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS05095 85784b46800e1aeabf9b09c3487b5545 570 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 411 548 4.6E-6 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 vm_RS05095 85784b46800e1aeabf9b09c3487b5545 570 SUPERFAMILY SSF52518 382 568 2.52E-25 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS05095 85784b46800e1aeabf9b09c3487b5545 570 Pfam PF16582 Middle domain of thiamine pyrophosphate 188 402 1.6E-42 T 11-11-2016 IPR032264 Menaquinone biosynthesis protein MenD, middle domain KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 vm_RS05095 85784b46800e1aeabf9b09c3487b5545 570 SUPERFAMILY SSF52467 226 370 1.91E-6 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS05095 85784b46800e1aeabf9b09c3487b5545 570 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 6 567 33.263 T 11-11-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 vm_RS05095 85784b46800e1aeabf9b09c3487b5545 570 Gene3D G3DSA:3.40.50.970 380 561 7.2E-22 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS05095 85784b46800e1aeabf9b09c3487b5545 570 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 12 443 3.7E-137 T 11-11-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 vm_RS05095 85784b46800e1aeabf9b09c3487b5545 570 PIRSF PIRSF004983 3 570 5.5E-193 T 11-11-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837 vm_RS11295 5d1bb46ef1b4018b68d23a32e09864c3 325 Gene3D G3DSA:1.10.287.70 208 324 2.4E-21 T 11-11-2016 vm_RS11295 5d1bb46ef1b4018b68d23a32e09864c3 325 SUPERFAMILY SSF141571 53 140 4.19E-14 T 11-11-2016 vm_RS11295 5d1bb46ef1b4018b68d23a32e09864c3 325 SUPERFAMILY SSF81324 229 325 3.14E-17 T 11-11-2016 vm_RS11295 5d1bb46ef1b4018b68d23a32e09864c3 325 Pfam PF07885 Ion channel 239 324 4.5E-16 T 11-11-2016 IPR013099 Potassium channel domain vm_RS11295 5d1bb46ef1b4018b68d23a32e09864c3 325 Pfam PF00805 Pentapeptide repeats (8 copies) 101 138 7.3E-6 T 11-11-2016 IPR001646 Pentapeptide repeat vm_RS06775 c500c60a514df9aaf8169ce4f39d9da0 231 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 98 112 - T 11-11-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 vm_RS06775 c500c60a514df9aaf8169ce4f39d9da0 231 Pfam PF01479 S4 domain 1 43 4.7E-6 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS06775 c500c60a514df9aaf8169ce4f39d9da0 231 Pfam PF00849 RNA pseudouridylate synthase 61 191 1.1E-17 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS06775 c500c60a514df9aaf8169ce4f39d9da0 231 Gene3D G3DSA:3.10.290.10 1 63 3.5E-18 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS06775 c500c60a514df9aaf8169ce4f39d9da0 231 SMART SM00363 1 59 9.3E-6 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS06775 c500c60a514df9aaf8169ce4f39d9da0 231 SUPERFAMILY SSF55120 60 226 3.36E-48 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS06775 c500c60a514df9aaf8169ce4f39d9da0 231 SUPERFAMILY SSF55174 1 79 4.12E-11 T 11-11-2016 vm_RS06775 c500c60a514df9aaf8169ce4f39d9da0 231 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 65 223 1.5E-49 T 11-11-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 vm_RS02155 0ccd28da7a0cceb44d34fde0bf874bfe 174 Pfam PF11736 Protein of unknown function (DUF3299) 37 171 7.8E-45 T 11-11-2016 IPR021727 Protein of unknown function DUF3299 vm_RS00080 3d63b091b65bbf6d6caabad24cfff731 326 Gene3D G3DSA:3.40.50.720 140 292 9.8E-76 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS00080 3d63b091b65bbf6d6caabad24cfff731 326 Pfam PF00107 Zinc-binding dehydrogenase 159 277 1.7E-15 T 11-11-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 vm_RS00080 3d63b091b65bbf6d6caabad24cfff731 326 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 3 326 2.9E-140 T 11-11-2016 IPR014188 Acrylyl-CoA reductase AcuI vm_RS00080 3d63b091b65bbf6d6caabad24cfff731 326 Gene3D G3DSA:3.90.180.10 16 139 8.5E-10 T 11-11-2016 IPR011032 GroES-like vm_RS00080 3d63b091b65bbf6d6caabad24cfff731 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 87 2.0E-4 T 11-11-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 vm_RS00080 3d63b091b65bbf6d6caabad24cfff731 326 SUPERFAMILY SSF50129 2 145 3.93E-44 T 11-11-2016 IPR011032 GroES-like vm_RS00080 3d63b091b65bbf6d6caabad24cfff731 326 SMART SM00829 13 324 3.6E-5 T 11-11-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 vm_RS00080 3d63b091b65bbf6d6caabad24cfff731 326 SUPERFAMILY SSF51735 117 291 8.41E-38 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS12780 9a51de16c3e507e12dcbf8e539514194 593 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 593 1.7E-139 T 11-11-2016 IPR010272 Type VI secretion system, TssF-like vm_RS12780 9a51de16c3e507e12dcbf8e539514194 593 Pfam PF05947 Type VI secretion system, ImpG, VasA, VC_A0110 6 590 3.5E-140 T 11-11-2016 IPR010272 Type VI secretion system, TssF-like vm_RS12780 9a51de16c3e507e12dcbf8e539514194 593 PIRSF PIRSF028304 1 592 4.3E-120 T 11-11-2016 IPR010272 Type VI secretion system, TssF-like vm_RS00310 3819aeafe8a85724211eb5db1c766c34 370 Pfam PF04055 Radical SAM superfamily 81 221 4.3E-10 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS00310 3819aeafe8a85724211eb5db1c766c34 370 Gene3D G3DSA:3.20.20.70 37 359 1.5E-46 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS00310 3819aeafe8a85724211eb5db1c766c34 370 TIGRFAM TIGR02351 thiH: thiazole biosynthesis protein ThiH 3 366 5.5E-174 T 11-11-2016 IPR012726 Thiazole biosynthesis ThiH GO:0005506|GO:0009228|GO:0051539 KEGG: 00730+4.1.99.19|MetaCyc: PWY-6892 vm_RS00310 3819aeafe8a85724211eb5db1c766c34 370 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 256 358 6.6E-24 T 11-11-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 vm_RS00310 3819aeafe8a85724211eb5db1c766c34 370 SUPERFAMILY SSF102114 37 333 3.27E-53 T 11-11-2016 vm_RS00310 3819aeafe8a85724211eb5db1c766c34 370 SMART SM00876 256 359 5.8E-32 T 11-11-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 vm_RS10635 20f61d5e17ffdfed24d754ae8ccc049b 281 Pfam PF14489 QueF-like protein 194 269 1.2E-26 T 11-11-2016 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 vm_RS10635 20f61d5e17ffdfed24d754ae8ccc049b 281 PIRSF PIRSF004750 6 281 9.8E-130 T 11-11-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 vm_RS10635 20f61d5e17ffdfed24d754ae8ccc049b 281 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 21 130 1.6E-49 T 11-11-2016 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 vm_RS10635 20f61d5e17ffdfed24d754ae8ccc049b 281 SUPERFAMILY SSF55620 184 264 6.0E-10 T 11-11-2016 vm_RS10635 20f61d5e17ffdfed24d754ae8ccc049b 281 TIGRFAM TIGR03138 QueF: queuine synthase 11 281 2.0E-129 T 11-11-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 vm_RS10635 20f61d5e17ffdfed24d754ae8ccc049b 281 Gene3D G3DSA:3.30.1130.10 21 135 3.2E-46 T 11-11-2016 vm_RS10635 20f61d5e17ffdfed24d754ae8ccc049b 281 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 281 163.338 T 11-11-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700 vm_RS10635 20f61d5e17ffdfed24d754ae8ccc049b 281 Gene3D G3DSA:3.30.1130.10 144 280 2.2E-55 T 11-11-2016 vm_RS12020 63851d7bfeb3e2b93d8f50ec9992bfb1 98 SMART SM01103 3 86 3.0E-40 T 11-11-2016 IPR001890 RNA-binding, CRM domain GO:0003723 vm_RS12020 63851d7bfeb3e2b93d8f50ec9992bfb1 98 TIGRFAM TIGR00253 RNA_bind_YhbY: putative RNA-binding protein, YhbY family 3 97 6.3E-37 T 11-11-2016 IPR017924 RNA-binding protein YhbY GO:0003723 vm_RS12020 63851d7bfeb3e2b93d8f50ec9992bfb1 98 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 6.6E-21 T 11-11-2016 IPR001890 RNA-binding, CRM domain GO:0003723 vm_RS12020 63851d7bfeb3e2b93d8f50ec9992bfb1 98 Gene3D G3DSA:3.30.110.60 1 96 3.7E-32 T 11-11-2016 IPR001890 RNA-binding, CRM domain GO:0003723 vm_RS12020 63851d7bfeb3e2b93d8f50ec9992bfb1 98 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 9 98 1.0E-44 T 11-11-2016 IPR001890 RNA-binding, CRM domain GO:0003723 vm_RS12020 63851d7bfeb3e2b93d8f50ec9992bfb1 98 SUPERFAMILY SSF75471 1 94 3.4E-30 T 11-11-2016 IPR001890 RNA-binding, CRM domain GO:0003723 vm_RS08745 2b05dd52477430026c2899a0424ee626 327 Gene3D G3DSA:3.30.930.10 10 327 3.7E-135 T 11-11-2016 vm_RS08745 2b05dd52477430026c2899a0424ee626 327 SUPERFAMILY SSF55681 92 327 1.07E-82 T 11-11-2016 vm_RS08745 2b05dd52477430026c2899a0424ee626 327 Pfam PF01409 tRNA synthetases class II core domain (F) 92 326 3.9E-107 T 11-11-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 vm_RS08745 2b05dd52477430026c2899a0424ee626 327 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 39 327 1.6E-114 T 11-11-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 vm_RS08745 2b05dd52477430026c2899a0424ee626 327 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 326 49.656 T 11-11-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 vm_RS08745 2b05dd52477430026c2899a0424ee626 327 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 4.9E-25 T 11-11-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 vm_RS08745 2b05dd52477430026c2899a0424ee626 327 SUPERFAMILY SSF46589 13 99 1.26E-22 T 11-11-2016 IPR010978 tRNA-binding arm GO:0000166 vm_RS09450 5d603fc4c5741ef735171189e680adfe 329 Pfam PF01300 Telomere recombination 28 203 1.1E-56 T 11-11-2016 IPR006070 YrdC-like domain GO:0003725 vm_RS09450 5d603fc4c5741ef735171189e680adfe 329 PIRSF PIRSF004930 8 329 2.9E-106 T 11-11-2016 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 vm_RS09450 5d603fc4c5741ef735171189e680adfe 329 Gene3D G3DSA:3.90.870.10 16 210 2.4E-73 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain vm_RS09450 5d603fc4c5741ef735171189e680adfe 329 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 20 213 3.6E-57 T 11-11-2016 IPR006070 YrdC-like domain GO:0003725 vm_RS09450 5d603fc4c5741ef735171189e680adfe 329 SUPERFAMILY SSF55821 19 215 5.19E-62 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain vm_RS09450 5d603fc4c5741ef735171189e680adfe 329 Pfam PF03481 Putative GTP-binding controlling metal-binding 205 329 9.5E-18 T 11-11-2016 IPR005145 Putative GTP-binding controlling metal-binding domain vm_RS14235 8a252dfbba3782570ead6deec8e8e0b4 520 SMART SM00862 24 100 1.6E-12 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS14235 8a252dfbba3782570ead6deec8e8e0b4 520 Pfam PF00486 Transcriptional regulatory protein, C terminal 25 100 1.0E-15 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS14235 8a252dfbba3782570ead6deec8e8e0b4 520 SUPERFAMILY SSF46894 6 103 5.39E-17 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS14235 8a252dfbba3782570ead6deec8e8e0b4 520 Gene3D G3DSA:1.25.40.10 422 484 1.3E-5 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS14235 8a252dfbba3782570ead6deec8e8e0b4 520 Gene3D G3DSA:1.25.40.10 319 389 1.3E-5 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS14235 8a252dfbba3782570ead6deec8e8e0b4 520 Gene3D G3DSA:1.10.10.10 7 103 6.9E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12150 19af08547017d35ed591ae696224ff14 541 SUPERFAMILY SSF161098 6 263 3.01E-45 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12150 19af08547017d35ed591ae696224ff14 541 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 68 254 2.8E-13 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12150 19af08547017d35ed591ae696224ff14 541 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 343 538 1.1E-8 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12150 19af08547017d35ed591ae696224ff14 541 SUPERFAMILY SSF161098 281 535 3.49E-39 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12150 19af08547017d35ed591ae696224ff14 541 Gene3D G3DSA:1.10.3720.10 291 536 3.2E-31 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12150 19af08547017d35ed591ae696224ff14 541 Gene3D G3DSA:1.10.3720.10 10 264 8.4E-39 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 SUPERFAMILY SSF100920 383 539 6.67E-59 T 11-11-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 Gene3D G3DSA:3.30.420.40 118 194 5.8E-65 T 11-11-2016 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 Gene3D G3DSA:3.30.420.40 4 52 5.8E-65 T 11-11-2016 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 630 36.372 T 11-11-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 602 2.9E-287 T 11-11-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 11-11-2016 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 Gene3D G3DSA:3.90.640.10 229 314 3.3E-32 T 11-11-2016 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 PRINTS PR00301 70kDa heat shock protein signature 468 484 7.1E-79 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 PRINTS PR00301 70kDa heat shock protein signature 53 61 7.1E-79 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 PRINTS PR00301 70kDa heat shock protein signature 333 349 7.1E-79 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 PRINTS PR00301 70kDa heat shock protein signature 387 406 7.1E-79 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 PRINTS PR00301 70kDa heat shock protein signature 3 16 7.1E-79 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 PRINTS PR00301 70kDa heat shock protein signature 137 157 7.1E-79 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 PRINTS PR00301 70kDa heat shock protein signature 31 43 7.1E-79 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 PRINTS PR00301 70kDa heat shock protein signature 197 207 7.1E-79 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 PRINTS PR00301 70kDa heat shock protein signature 364 384 7.1E-79 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 Gene3D G3DSA:3.30.420.40 318 360 1.6E-32 T 11-11-2016 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 Gene3D G3DSA:3.30.420.40 195 228 1.6E-32 T 11-11-2016 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 SUPERFAMILY SSF53067 1 182 2.36E-66 T 11-11-2016 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 Gene3D G3DSA:2.60.34.10 389 530 6.9E-69 T 11-11-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 SUPERFAMILY SSF100934 534 608 1.02E-5 T 11-11-2016 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 SUPERFAMILY SSF53067 186 381 7.13E-67 T 11-11-2016 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 191 204 - T 11-11-2016 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 Pfam PF00012 Hsp70 protein 4 601 2.2E-263 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 336 350 - T 11-11-2016 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 Gene3D G3DSA:3.30.30.30 53 106 2.6E-29 T 11-11-2016 vm_RS10845 99d6b9de8f92a7d1b50cb6bbe2f2bd9c 635 Gene3D G3DSA:1.20.1270.10 531 600 9.5E-25 T 11-11-2016 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 vm_RS04590 a919d1f2b4422b56d4fe84f6ee6e73d0 697 Pfam PF00771 FHIPEP family 32 687 3.5E-271 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 vm_RS04590 a919d1f2b4422b56d4fe84f6ee6e73d0 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 2.9E-56 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 vm_RS04590 a919d1f2b4422b56d4fe84f6ee6e73d0 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 2.9E-56 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 vm_RS04590 a919d1f2b4422b56d4fe84f6ee6e73d0 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 2.9E-56 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 vm_RS04590 a919d1f2b4422b56d4fe84f6ee6e73d0 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 2.9E-56 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 vm_RS04590 a919d1f2b4422b56d4fe84f6ee6e73d0 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 2.9E-56 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 vm_RS04590 a919d1f2b4422b56d4fe84f6ee6e73d0 697 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 2.9E-56 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 vm_RS04590 a919d1f2b4422b56d4fe84f6ee6e73d0 697 PIRSF PIRSF005419 10 697 1.1E-254 T 11-11-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 vm_RS04590 a919d1f2b4422b56d4fe84f6ee6e73d0 697 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 22 694 1.5E-269 T 11-11-2016 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 vm_RS04590 a919d1f2b4422b56d4fe84f6ee6e73d0 697 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 11-11-2016 IPR025505 FHIPEP conserved site vm_RS09430 f8978c0afd040458c90c9f6dcc2913a4 194 SUPERFAMILY SSF103039 4 190 2.22E-31 T 11-11-2016 IPR028976 CheC-like domain vm_RS09430 f8978c0afd040458c90c9f6dcc2913a4 194 Gene3D G3DSA:3.40.1550.10 5 192 1.6E-34 T 11-11-2016 IPR028976 CheC-like domain vm_RS09430 f8978c0afd040458c90c9f6dcc2913a4 194 Pfam PF04509 CheC-like family 9 43 5.3E-12 T 11-11-2016 IPR007597 CheC-like protein GO:0016787 vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 412 519 1.5E-15 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 Gene3D G3DSA:3.30.565.10 388 518 2.4E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 SUPERFAMILY SSF55874 406 518 3.01E-26 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 Gene3D G3DSA:1.10.287.130 301 368 7.0E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 SMART SM00091 195 263 9.8E-5 T 11-11-2016 IPR000014 PAS domain vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 312 360 1.7E-7 T 11-11-2016 vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 SMART SM00387 410 521 6.1E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 Gene3D G3DSA:3.30.450.20 13 146 3.4E-45 T 11-11-2016 vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 SUPERFAMILY SSF103190 19 149 1.73E-33 T 11-11-2016 IPR029151 Periplasmic sensor domain-like vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 SUPERFAMILY SSF55785 189 301 1.06E-8 T 11-11-2016 IPR000014 PAS domain vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 Gene3D G3DSA:3.30.450.20 190 300 1.9E-9 T 11-11-2016 vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 Pfam PF17203 Single cache domain 3 21 147 6.1E-21 T 11-11-2016 IPR033463 Single cache domain 3 vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 451 465 7.7E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 481 499 7.7E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS11270 edaddd96f977bc120a7fb81343dc76db 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 505 518 7.7E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS11645 4b00309eb304a6b48f6ed95d1a029c1b 324 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 14 312 7.9E-105 T 11-11-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS11645 4b00309eb304a6b48f6ed95d1a029c1b 324 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 135 149 - T 11-11-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS11645 4b00309eb304a6b48f6ed95d1a029c1b 324 SUPERFAMILY SSF55174 17 69 6.73E-11 T 11-11-2016 vm_RS11645 4b00309eb304a6b48f6ed95d1a029c1b 324 SMART SM00363 18 83 1.1E-8 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS11645 4b00309eb304a6b48f6ed95d1a029c1b 324 Gene3D G3DSA:3.10.290.10 18 69 1.0E-12 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS11645 4b00309eb304a6b48f6ed95d1a029c1b 324 Pfam PF01479 S4 domain 18 65 1.5E-8 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS11645 4b00309eb304a6b48f6ed95d1a029c1b 324 SUPERFAMILY SSF55120 77 309 4.11E-79 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS11645 4b00309eb304a6b48f6ed95d1a029c1b 324 Pfam PF00849 RNA pseudouridylate synthase 92 241 1.3E-31 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS12260 c1d8ea26eeebe70b3cf91d0b0ad82189 288 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 14 284 1.8E-101 T 11-11-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS12260 c1d8ea26eeebe70b3cf91d0b0ad82189 288 SUPERFAMILY SSF53790 12 232 5.23E-85 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 vm_RS12260 c1d8ea26eeebe70b3cf91d0b0ad82189 288 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 13 234 38.149 T 11-11-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS12260 c1d8ea26eeebe70b3cf91d0b0ad82189 288 PIRSF PIRSF005917 1 288 1.3E-107 T 11-11-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS12260 c1d8ea26eeebe70b3cf91d0b0ad82189 288 Gene3D G3DSA:3.30.950.10 121 235 2.2E-44 T 11-11-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 vm_RS12260 c1d8ea26eeebe70b3cf91d0b0ad82189 288 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 91 102 - T 11-11-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS12260 c1d8ea26eeebe70b3cf91d0b0ad82189 288 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 13 213 8.8E-28 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 vm_RS12260 c1d8ea26eeebe70b3cf91d0b0ad82189 288 Gene3D G3DSA:3.40.1010.10 13 120 2.9E-14 T 11-11-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 544 0.0 T 11-11-2016 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|MetaCyc: PWY-7343 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 SUPERFAMILY SSF53738 26 235 1.01E-52 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 SUPERFAMILY SSF53738 209 317 9.06E-7 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 Gene3D G3DSA:3.30.310.50 466 544 2.7E-30 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 490 535 2.3E-6 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 Gene3D G3DSA:3.40.120.10 226 317 1.4E-43 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 SUPERFAMILY SSF55957 432 544 1.07E-20 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 210 317 7.8E-17 T 11-11-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 180 8.5E-40 T 11-11-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 SUPERFAMILY SSF53738 305 447 2.39E-31 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 140 149 - T 11-11-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 320 438 9.0E-29 T 11-11-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 Gene3D G3DSA:3.40.120.10 30 225 1.9E-59 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS04465 6ab060230964f53932783ee15082cb2c 548 Gene3D G3DSA:3.40.120.10 318 441 5.9E-35 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS09085 6f0a9fa001aa05e67d2b831198235bf3 196 Gene3D G3DSA:1.10.150.20 112 194 2.9E-29 T 11-11-2016 vm_RS09085 6f0a9fa001aa05e67d2b831198235bf3 196 PIRSF PIRSF028788 4 196 3.5E-34 T 11-11-2016 IPR026256 Transcriptional regulator, TfoX/Sxy-type vm_RS09085 6f0a9fa001aa05e67d2b831198235bf3 196 Pfam PF04993 TfoX N-terminal domain 10 99 6.8E-24 T 11-11-2016 IPR007076 TfoX, N-terminal vm_RS09085 6f0a9fa001aa05e67d2b831198235bf3 196 SUPERFAMILY SSF159894 3 100 4.71E-27 T 11-11-2016 vm_RS09085 6f0a9fa001aa05e67d2b831198235bf3 196 Pfam PF04994 TfoX C-terminal domain 112 190 4.1E-28 T 11-11-2016 IPR007077 TfoX, C-terminal vm_RS09085 6f0a9fa001aa05e67d2b831198235bf3 196 Gene3D G3DSA:3.30.1460.30 2 100 2.8E-28 T 11-11-2016 IPR007076 TfoX, N-terminal vm_RS04845 f7b72edfc049f88b6353a2ee7a025144 341 Pfam PF02504 Fatty acid synthesis protein 5 327 2.3E-100 T 11-11-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 vm_RS04845 f7b72edfc049f88b6353a2ee7a025144 341 PIRSF PIRSF002465 2 339 4.7E-125 T 11-11-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 vm_RS04845 f7b72edfc049f88b6353a2ee7a025144 341 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 6 335 3.5E-106 T 11-11-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 vm_RS04845 f7b72edfc049f88b6353a2ee7a025144 341 SUPERFAMILY SSF53659 4 337 1.48E-102 T 11-11-2016 vm_RS04845 f7b72edfc049f88b6353a2ee7a025144 341 Gene3D G3DSA:3.40.718.10 3 335 1.0E-125 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 vm_RS04845 f7b72edfc049f88b6353a2ee7a025144 341 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 340 135.983 T 11-11-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 vm_RS10350 907df57c7109f481d5910201f86702f5 858 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS10350 907df57c7109f481d5910201f86702f5 858 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 857 23.407 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 vm_RS10350 907df57c7109f481d5910201f86702f5 858 Gene3D G3DSA:3.90.740.10 223 424 4.9E-61 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 vm_RS10350 907df57c7109f481d5910201f86702f5 858 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 5 857 0.0 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 vm_RS10350 907df57c7109f481d5910201f86702f5 858 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 404 9.7E-80 T 11-11-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 vm_RS10350 907df57c7109f481d5910201f86702f5 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 4.3E-52 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 vm_RS10350 907df57c7109f481d5910201f86702f5 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 485 503 4.3E-52 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 vm_RS10350 907df57c7109f481d5910201f86702f5 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 4.3E-52 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 vm_RS10350 907df57c7109f481d5910201f86702f5 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 556 566 4.3E-52 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 vm_RS10350 907df57c7109f481d5910201f86702f5 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 4.3E-52 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 vm_RS10350 907df57c7109f481d5910201f86702f5 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 4.3E-52 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 vm_RS10350 907df57c7109f481d5910201f86702f5 858 PRINTS PR00985 Leucyl-tRNA synthetase signature 523 545 4.3E-52 T 11-11-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 vm_RS10350 907df57c7109f481d5910201f86702f5 858 Pfam PF08264 Anticodon-binding domain of tRNA 700 819 1.3E-15 T 11-11-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 vm_RS10350 907df57c7109f481d5910201f86702f5 858 SUPERFAMILY SSF50677 226 415 8.27E-60 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 vm_RS10350 907df57c7109f481d5910201f86702f5 858 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 418 571 7.9E-9 T 11-11-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS10350 907df57c7109f481d5910201f86702f5 858 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 618 650 1.4E-7 T 11-11-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS10350 907df57c7109f481d5910201f86702f5 858 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 172 8.8E-27 T 11-11-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS10350 907df57c7109f481d5910201f86702f5 858 SUPERFAMILY SSF47323 661 857 1.05E-34 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS10350 907df57c7109f481d5910201f86702f5 858 SUPERFAMILY SSF52374 4 226 7.04E-146 T 11-11-2016 vm_RS10350 907df57c7109f481d5910201f86702f5 858 SUPERFAMILY SSF52374 416 667 7.04E-146 T 11-11-2016 vm_RS10350 907df57c7109f481d5910201f86702f5 858 Gene3D G3DSA:1.10.730.10 647 793 1.3E-46 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS10350 907df57c7109f481d5910201f86702f5 858 Gene3D G3DSA:3.40.50.620 4 222 3.3E-157 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS10350 907df57c7109f481d5910201f86702f5 858 Gene3D G3DSA:3.40.50.620 425 572 3.3E-157 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS10350 907df57c7109f481d5910201f86702f5 858 Gene3D G3DSA:3.40.50.620 617 646 3.3E-157 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS14480 f95dbb31c5e531d7226e268b154aa208 559 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 354 557 2.1E-44 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS14480 f95dbb31c5e531d7226e268b154aa208 559 Pfam PF00672 HAMP domain 209 278 4.9E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS14480 f95dbb31c5e531d7226e268b154aa208 559 SUPERFAMILY SSF58104 250 559 1.44E-73 T 11-11-2016 vm_RS14480 f95dbb31c5e531d7226e268b154aa208 559 Gene3D G3DSA:1.10.287.950 315 529 4.0E-55 T 11-11-2016 vm_RS14480 f95dbb31c5e531d7226e268b154aa208 559 SMART SM01049 46 135 1.6E-33 T 11-11-2016 IPR033480 Single Cache domain 2 vm_RS14480 f95dbb31c5e531d7226e268b154aa208 559 SMART SM00304 228 282 2.2E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS14480 f95dbb31c5e531d7226e268b154aa208 559 SMART SM00283 301 558 1.2E-62 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS14480 f95dbb31c5e531d7226e268b154aa208 559 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 424 453 3.6E-5 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS14480 f95dbb31c5e531d7226e268b154aa208 559 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 325 354 3.6E-5 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS14480 f95dbb31c5e531d7226e268b154aa208 559 Gene3D G3DSA:3.30.450.20 41 187 2.7E-48 T 11-11-2016 vm_RS14480 f95dbb31c5e531d7226e268b154aa208 559 Pfam PF17200 Single Cache domain 2 49 194 4.2E-40 T 11-11-2016 IPR033480 Single Cache domain 2 vm_RS11185 5147ab0a2729bab3a7a33e701940ed11 537 Pfam PF02384 N-6 DNA Methylase 159 496 1.1E-110 T 11-11-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 vm_RS11185 5147ab0a2729bab3a7a33e701940ed11 537 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 206 220 7.1E-21 T 11-11-2016 vm_RS11185 5147ab0a2729bab3a7a33e701940ed11 537 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 183 199 7.1E-21 T 11-11-2016 vm_RS11185 5147ab0a2729bab3a7a33e701940ed11 537 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 316 340 7.1E-21 T 11-11-2016 vm_RS11185 5147ab0a2729bab3a7a33e701940ed11 537 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 280 292 7.1E-21 T 11-11-2016 vm_RS11185 5147ab0a2729bab3a7a33e701940ed11 537 SUPERFAMILY SSF53335 11 536 4.96E-133 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS11185 5147ab0a2729bab3a7a33e701940ed11 537 Pfam PF12161 HsdM N-terminal domain 12 140 1.1E-20 T 11-11-2016 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain vm_RS11185 5147ab0a2729bab3a7a33e701940ed11 537 Gene3D G3DSA:3.40.50.150 161 373 1.1E-33 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 SMART SM00487 602 792 3.3E-33 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 SUPERFAMILY SSF52540 784 992 1.01E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 SUPERFAMILY SSF143517 1000 1149 6.02E-43 T 11-11-2016 vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 Gene3D G3DSA:3.40.50.300 790 965 6.0E-36 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 SMART SM00982 1010 1110 7.8E-47 T 11-11-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 148 1084 0.0 T 11-11-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 SUPERFAMILY SSF52540 15 345 2.48E-98 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 SMART SM01058 481 578 1.0E-49 T 11-11-2016 IPR003711 CarD-like/TRCF domain vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 SUPERFAMILY SSF52540 351 466 8.5E-28 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 SUPERFAMILY SSF52540 525 785 6.0E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 Gene3D G3DSA:3.40.50.300 589 788 2.7E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 Gene3D G3DSA:3.30.2060.10 133 209 2.7E-15 T 11-11-2016 vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 SMART SM00490 828 912 4.1E-19 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 Pfam PF00270 DEAD/DEAH box helicase 607 767 2.8E-20 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 Pfam PF02559 CarD-like/TRCF domain 482 577 3.5E-25 T 11-11-2016 IPR003711 CarD-like/TRCF domain vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 SUPERFAMILY SSF141259 472 550 1.31E-24 T 11-11-2016 IPR003711 CarD-like/TRCF domain vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 Pfam PF03461 TRCF domain 1012 1102 5.8E-28 T 11-11-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 Pfam PF00271 Helicase conserved C-terminal domain 809 911 9.6E-17 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS05625 bb5fe6d31556df80b10976995646d594 1156 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 28 1109 28.902 T 11-11-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 vm_RS00085 92b9650a690eea7e8798b54af373a5c9 510 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 48 61 - T 11-11-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 vm_RS00085 92b9650a690eea7e8798b54af373a5c9 510 SUPERFAMILY SSF55021 332 418 3.2E-27 T 11-11-2016 vm_RS00085 92b9650a690eea7e8798b54af373a5c9 510 Gene3D G3DSA:3.40.1020.10 336 508 5.5E-54 T 11-11-2016 vm_RS00085 92b9650a690eea7e8798b54af373a5c9 510 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 10 508 8.3E-251 T 11-11-2016 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 vm_RS00085 92b9650a690eea7e8798b54af373a5c9 510 Gene3D G3DSA:3.40.50.1100 141 318 3.6E-45 T 11-11-2016 vm_RS00085 92b9650a690eea7e8798b54af373a5c9 510 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 25 311 4.6E-83 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS00085 92b9650a690eea7e8798b54af373a5c9 510 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 420 508 1.4E-24 T 11-11-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 vm_RS00085 92b9650a690eea7e8798b54af373a5c9 510 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 324 414 1.0E-23 T 11-11-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19 vm_RS00085 92b9650a690eea7e8798b54af373a5c9 510 SUPERFAMILY SSF53686 10 360 1.7E-106 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS00085 92b9650a690eea7e8798b54af373a5c9 510 SUPERFAMILY SSF55021 415 508 2.04E-26 T 11-11-2016 vm_RS00085 92b9650a690eea7e8798b54af373a5c9 510 Gene3D G3DSA:3.40.50.1100 56 140 8.5E-38 T 11-11-2016 vm_RS07710 d2d855b664528e12c9aa8f227f694769 683 Pfam PF05954 Phage late control gene D protein (GPD) 41 335 2.1E-77 T 11-11-2016 vm_RS07710 d2d855b664528e12c9aa8f227f694769 683 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 20 508 2.2E-129 T 11-11-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein vm_RS07710 d2d855b664528e12c9aa8f227f694769 683 Gene3D G3DSA:2.40.50.230 375 456 3.1E-40 T 11-11-2016 IPR006531 Gp5 N-terminal vm_RS07710 d2d855b664528e12c9aa8f227f694769 683 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 10 526 2.2E-187 T 11-11-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset vm_RS07710 d2d855b664528e12c9aa8f227f694769 683 SUPERFAMILY SSF69349 447 628 1.49E-49 T 11-11-2016 vm_RS07710 d2d855b664528e12c9aa8f227f694769 683 Gene3D G3DSA:3.55.50.10 104 194 1.7E-33 T 11-11-2016 vm_RS07710 d2d855b664528e12c9aa8f227f694769 683 SUPERFAMILY SSF69279 7 190 6.23E-51 T 11-11-2016 vm_RS07710 d2d855b664528e12c9aa8f227f694769 683 SUPERFAMILY SSF69279 197 370 7.99E-47 T 11-11-2016 vm_RS07710 d2d855b664528e12c9aa8f227f694769 683 SUPERFAMILY SSF69255 369 456 4.97E-33 T 11-11-2016 vm_RS14820 0b16c74b798956ee3b1f782b1f9b6c1a 453 SUPERFAMILY SSF53448 1 249 2.71E-63 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS14820 0b16c74b798956ee3b1f782b1f9b6c1a 453 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 392 426 2.7E-9 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS14820 0b16c74b798956ee3b1f782b1f9b6c1a 453 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 263 295 2.7E-6 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS14820 0b16c74b798956ee3b1f782b1f9b6c1a 453 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 314 347 4.9E-5 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS14820 0b16c74b798956ee3b1f782b1f9b6c1a 453 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 452 1.8E-209 T 11-11-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 vm_RS14820 0b16c74b798956ee3b1f782b1f9b6c1a 453 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 42.872 T 11-11-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587 vm_RS14820 0b16c74b798956ee3b1f782b1f9b6c1a 453 Gene3D G3DSA:2.160.10.10 243 321 2.7E-20 T 11-11-2016 vm_RS14820 0b16c74b798956ee3b1f782b1f9b6c1a 453 Gene3D G3DSA:3.90.550.10 1 242 1.2E-70 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS14820 0b16c74b798956ee3b1f782b1f9b6c1a 453 SUPERFAMILY SSF51161 252 434 1.38E-52 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS14820 0b16c74b798956ee3b1f782b1f9b6c1a 453 Gene3D G3DSA:2.160.10.10 322 452 1.6E-34 T 11-11-2016 vm_RS14820 0b16c74b798956ee3b1f782b1f9b6c1a 453 Pfam PF12804 MobA-like NTP transferase domain 6 127 2.7E-22 T 11-11-2016 IPR025877 MobA-like NTP transferase vm_RS15670 e901e23620628dadedfcf2e364b582a5 329 Pfam PF01609 Transposase DDE domain 164 270 3.3E-5 T 11-11-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 vm_RS15670 e901e23620628dadedfcf2e364b582a5 329 SUPERFAMILY SSF53098 2 327 1.21E-84 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS15670 e901e23620628dadedfcf2e364b582a5 329 Gene3D G3DSA:1.10.740.10 258 329 1.5E-22 T 11-11-2016 IPR014737 Transposase, Tn5-like, C-terminal vm_RS15670 e901e23620628dadedfcf2e364b582a5 329 Gene3D G3DSA:3.90.350.10 1 256 2.3E-86 T 11-11-2016 IPR014736 Transposase, Tn5-like, core vm_RS02745 cf8db308132862c4cd61b1c6436f861c 403 SUPERFAMILY SSF81301 1 119 1.96E-30 T 11-11-2016 vm_RS02745 cf8db308132862c4cd61b1c6436f861c 403 SUPERFAMILY SSF81891 120 360 2.22E-54 T 11-11-2016 vm_RS02745 cf8db308132862c4cd61b1c6436f861c 403 Pfam PF01743 Poly A polymerase head domain 3 122 2.7E-17 T 11-11-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 vm_RS02745 cf8db308132862c4cd61b1c6436f861c 403 Pfam PF01966 HD domain 229 326 3.3E-7 T 11-11-2016 IPR006674 HD domain vm_RS02745 cf8db308132862c4cd61b1c6436f861c 403 Hamap MF_01261 Multifunctional CCA protein [cca]. 1 403 52.416 T 11-11-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 vm_RS02745 cf8db308132862c4cd61b1c6436f861c 403 Hamap MF_01262 CCA-adding enzyme [cca]. 1 401 42.836 T 11-11-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 vm_RS02745 cf8db308132862c4cd61b1c6436f861c 403 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 212 8.6E-14 T 11-11-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 vm_RS02745 cf8db308132862c4cd61b1c6436f861c 403 Gene3D G3DSA:3.30.460.10 1 121 1.6E-30 T 11-11-2016 vm_RS02745 cf8db308132862c4cd61b1c6436f861c 403 PIRSF PIRSF000813 1 403 5.9E-201 T 11-11-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 vm_RS02745 cf8db308132862c4cd61b1c6436f861c 403 Gene3D G3DSA:1.10.3090.10 122 359 1.7E-54 T 11-11-2016 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 SUPERFAMILY SSF88946 57 165 5.89E-46 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 Gene3D G3DSA:1.10.10.10 168 217 2.0E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 119 132 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 9 329 39.787 T 11-11-2016 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 Pfam PF04545 Sigma-70, region 4 263 316 7.1E-18 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 Pfam PF00140 Sigma-70 factor, region 1.2 57 90 2.7E-13 T 11-11-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 SUPERFAMILY SSF88659 168 241 1.96E-15 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 91 318 5.6E-37 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 Gene3D G3DSA:1.10.601.10 26 164 3.1E-59 T 11-11-2016 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 50 329 5.7E-139 T 11-11-2016 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 PRINTS PR00046 Major sigma-70 factor signature 288 303 1.5E-27 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 PRINTS PR00046 Major sigma-70 factor signature 303 314 1.5E-27 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 PRINTS PR00046 Major sigma-70 factor signature 143 151 1.5E-27 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 PRINTS PR00046 Major sigma-70 factor signature 267 279 1.5E-27 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 PRINTS PR00046 Major sigma-70 factor signature 119 132 1.5E-27 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 Pfam PF04542 Sigma-70 region 2 95 164 6.6E-20 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 SUPERFAMILY SSF88659 225 324 1.44E-25 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 Pfam PF04539 Sigma-70 region 3 175 248 2.6E-22 T 11-11-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 288 314 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12520 cae1f48cbbe0998e70cfe2e648842279 336 Gene3D G3DSA:1.10.10.10 257 323 1.3E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS15475 8b8f96a38785af43d2e6dd89fbfeae26 103 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 1 100 2.5E-19 T 11-11-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 vm_RS15475 8b8f96a38785af43d2e6dd89fbfeae26 103 TIGRFAM TIGR00494 crcB: protein CrcB 1 101 2.3E-23 T 11-11-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 vm_RS15475 8b8f96a38785af43d2e6dd89fbfeae26 103 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 1 103 15.392 T 11-11-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 vm_RS10215 24b45462e1bf2b07c039a421a6dc226e 279 SMART SM00862 30 107 1.1E-18 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS10215 24b45462e1bf2b07c039a421a6dc226e 279 Pfam PF00486 Transcriptional regulatory protein, C terminal 33 107 8.4E-21 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS10215 24b45462e1bf2b07c039a421a6dc226e 279 Gene3D G3DSA:1.10.10.10 12 109 4.2E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS10215 24b45462e1bf2b07c039a421a6dc226e 279 SUPERFAMILY SSF46894 23 107 8.79E-19 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS10790 9d4daec76c144dba99565d9ca9d76bde 526 Gene3D G3DSA:3.40.190.10 20 150 2.7E-24 T 11-11-2016 vm_RS10790 9d4daec76c144dba99565d9ca9d76bde 526 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 320 348 - T 11-11-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 vm_RS10790 9d4daec76c144dba99565d9ca9d76bde 526 SUPERFAMILY SSF53955 257 408 2.31E-38 T 11-11-2016 IPR023346 Lysozyme-like domain vm_RS10790 9d4daec76c144dba99565d9ca9d76bde 526 SUPERFAMILY SSF53955 443 461 2.31E-38 T 11-11-2016 IPR023346 Lysozyme-like domain vm_RS10790 9d4daec76c144dba99565d9ca9d76bde 526 SUPERFAMILY SSF53850 44 278 8.83E-36 T 11-11-2016 vm_RS10790 9d4daec76c144dba99565d9ca9d76bde 526 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 9 494 48.864 T 11-11-2016 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 vm_RS10790 9d4daec76c144dba99565d9ca9d76bde 526 Pfam PF01464 Transglycosylase SLT domain 310 411 3.8E-21 T 11-11-2016 IPR008258 Transglycosylase SLT domain 1 vm_RS10790 9d4daec76c144dba99565d9ca9d76bde 526 Gene3D G3DSA:1.10.530.10 297 467 2.6E-39 T 11-11-2016 vm_RS10790 9d4daec76c144dba99565d9ca9d76bde 526 SMART SM00062 43 279 4.9E-30 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS10790 9d4daec76c144dba99565d9ca9d76bde 526 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 44 278 4.2E-32 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS11240 69f523ca6334de48ca10bfec420dc9e4 98 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 10 80 2.0E-32 T 11-11-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 vm_RS11240 69f523ca6334de48ca10bfec420dc9e4 98 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 5 86 3.1E-31 T 11-11-2016 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein vm_RS11240 69f523ca6334de48ca10bfec420dc9e4 98 TIGRFAM TIGR01608 citD: citrate lyase acyl carrier protein 1 94 1.0E-34 T 11-11-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 vm_RS11240 69f523ca6334de48ca10bfec420dc9e4 98 PIRSF PIRSF002736 1 97 4.1E-41 T 11-11-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 vm_RS11240 69f523ca6334de48ca10bfec420dc9e4 98 Hamap MF_00805 Citrate lyase acyl carrier protein [citD]. 1 97 27.709 T 11-11-2016 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 vm_RS12350 52d9c4850b00b8b6d1bcd790e77d8b4d 247 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 234 2.2E-107 T 11-11-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 vm_RS12350 52d9c4850b00b8b6d1bcd790e77d8b4d 247 PIRSF PIRSF000386 1 246 7.1E-101 T 11-11-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 vm_RS12350 52d9c4850b00b8b6d1bcd790e77d8b4d 247 SUPERFAMILY SSF75217 1 243 3.92E-101 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases vm_RS12350 52d9c4850b00b8b6d1bcd790e77d8b4d 247 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 247 116.444 T 11-11-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 vm_RS12350 52d9c4850b00b8b6d1bcd790e77d8b4d 247 Gene3D G3DSA:3.40.1280.10 1 160 1.2E-67 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal vm_RS12350 52d9c4850b00b8b6d1bcd790e77d8b4d 247 Gene3D G3DSA:1.10.1270.20 163 244 1.1E-34 T 11-11-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 vm_RS12350 52d9c4850b00b8b6d1bcd790e77d8b4d 247 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 221 3.5E-69 T 11-11-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 vm_RS06590 cbc5ce1c6b17291bc4d05c5934c8aa75 484 SUPERFAMILY SSF56024 69 313 8.11E-50 T 11-11-2016 vm_RS06590 cbc5ce1c6b17291bc4d05c5934c8aa75 484 Hamap MF_00190 Cardiolipin synthase A [clsA]. 2 484 50.665 T 11-11-2016 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 vm_RS06590 cbc5ce1c6b17291bc4d05c5934c8aa75 484 Pfam PF13396 Phospholipase_D-nuclease N-terminal 22 59 2.8E-7 T 11-11-2016 IPR027379 Cardiolipin synthase N-terminal vm_RS06590 cbc5ce1c6b17291bc4d05c5934c8aa75 484 SMART SM00155 219 246 3.7E-6 T 11-11-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 vm_RS06590 cbc5ce1c6b17291bc4d05c5934c8aa75 484 SMART SM00155 397 424 1.8E-5 T 11-11-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 vm_RS06590 cbc5ce1c6b17291bc4d05c5934c8aa75 484 SUPERFAMILY SSF56024 273 471 3.59E-46 T 11-11-2016 vm_RS06590 cbc5ce1c6b17291bc4d05c5934c8aa75 484 Gene3D G3DSA:3.30.870.10 320 457 3.4E-33 T 11-11-2016 vm_RS06590 cbc5ce1c6b17291bc4d05c5934c8aa75 484 Gene3D G3DSA:3.30.870.10 112 317 2.3E-40 T 11-11-2016 vm_RS06590 cbc5ce1c6b17291bc4d05c5934c8aa75 484 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 8 484 8.0E-153 T 11-11-2016 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 vm_RS06590 cbc5ce1c6b17291bc4d05c5934c8aa75 484 Pfam PF13091 PLD-like domain 135 268 2.2E-16 T 11-11-2016 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 vm_RS06590 cbc5ce1c6b17291bc4d05c5934c8aa75 484 Pfam PF13091 PLD-like domain 327 445 5.2E-24 T 11-11-2016 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 vm_RS10100 12c19cc7d4de680a2bf47acb94e975d9 461 Gene3D G3DSA:1.10.246.40 2 65 4.5E-26 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS10100 12c19cc7d4de680a2bf47acb94e975d9 461 Pfam PF01609 Transposase DDE domain 294 360 2.5E-5 T 11-11-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 vm_RS10100 12c19cc7d4de680a2bf47acb94e975d9 461 Gene3D G3DSA:1.10.740.10 348 458 9.5E-46 T 11-11-2016 IPR014737 Transposase, Tn5-like, C-terminal vm_RS10100 12c19cc7d4de680a2bf47acb94e975d9 461 Gene3D G3DSA:3.90.350.10 68 346 1.0E-92 T 11-11-2016 IPR014736 Transposase, Tn5-like, core vm_RS10100 12c19cc7d4de680a2bf47acb94e975d9 461 Pfam PF14706 Transposase DNA-binding 9 66 1.8E-20 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS10100 12c19cc7d4de680a2bf47acb94e975d9 461 SUPERFAMILY SSF53098 4 460 8.34E-128 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS10100 12c19cc7d4de680a2bf47acb94e975d9 461 Pfam PF02281 Transposase Tn5 dimerisation domain 361 454 1.2E-16 T 11-11-2016 IPR003201 Transposase Tn5, dimerisation vm_RS08265 12c19cc7d4de680a2bf47acb94e975d9 461 Gene3D G3DSA:1.10.246.40 2 65 4.5E-26 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS08265 12c19cc7d4de680a2bf47acb94e975d9 461 Pfam PF01609 Transposase DDE domain 294 360 2.5E-5 T 11-11-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 vm_RS08265 12c19cc7d4de680a2bf47acb94e975d9 461 Gene3D G3DSA:1.10.740.10 348 458 9.5E-46 T 11-11-2016 IPR014737 Transposase, Tn5-like, C-terminal vm_RS08265 12c19cc7d4de680a2bf47acb94e975d9 461 Gene3D G3DSA:3.90.350.10 68 346 1.0E-92 T 11-11-2016 IPR014736 Transposase, Tn5-like, core vm_RS08265 12c19cc7d4de680a2bf47acb94e975d9 461 Pfam PF14706 Transposase DNA-binding 9 66 1.8E-20 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS08265 12c19cc7d4de680a2bf47acb94e975d9 461 SUPERFAMILY SSF53098 4 460 8.34E-128 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS08265 12c19cc7d4de680a2bf47acb94e975d9 461 Pfam PF02281 Transposase Tn5 dimerisation domain 361 454 1.2E-16 T 11-11-2016 IPR003201 Transposase Tn5, dimerisation vm_RS08145 7c9018c391f3c1a2b67a3081c7ae3577 298 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 3 296 50.171 T 11-11-2016 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 vm_RS08145 7c9018c391f3c1a2b67a3081c7ae3577 298 ProSitePatterns PS00161 Isocitrate lyase signature. 119 124 - T 11-11-2016 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 vm_RS08145 7c9018c391f3c1a2b67a3081c7ae3577 298 Gene3D G3DSA:3.20.20.60 5 292 2.2E-95 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS08145 7c9018c391f3c1a2b67a3081c7ae3577 298 Pfam PF13714 Phosphoenolpyruvate phosphomutase 15 259 1.5E-44 T 11-11-2016 vm_RS08145 7c9018c391f3c1a2b67a3081c7ae3577 298 SUPERFAMILY SSF51621 5 294 1.3E-97 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS08145 7c9018c391f3c1a2b67a3081c7ae3577 298 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 6 295 2.0E-127 T 11-11-2016 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 SUPERFAMILY SSF56731 122 432 1.4E-110 T 11-11-2016 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 Pfam PF01807 CHC2 zinc finger 6 100 4.1E-41 T 11-11-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 Gene3D G3DSA:3.90.980.10 122 247 9.7E-48 T 11-11-2016 IPR013264 DNA primase, catalytic core, N-terminal vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 Gene3D G3DSA:3.90.580.10 2 101 6.1E-43 T 11-11-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 Pfam PF08278 DNA primase DnaG DnaB-binding 457 580 2.9E-33 T 11-11-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 PIRSF PIRSF002811 2 586 6.9E-143 T 11-11-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 Hamap MF_00974 DNA primase [dnaG]. 4 582 29.119 T 11-11-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 Pfam PF08275 DNA primase catalytic core, N-terminal domain 133 257 9.0E-43 T 11-11-2016 IPR013264 DNA primase, catalytic core, N-terminal vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 SMART SM00493 266 337 1.7E-19 T 11-11-2016 IPR006171 Toprim domain vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 SMART SM00400 36 90 2.7E-35 T 11-11-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 Gene3D G3DSA:1.20.50.20 375 433 8.9E-19 T 11-11-2016 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 Gene3D G3DSA:1.10.860.10 442 582 1.4E-53 T 11-11-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 Pfam PF10410 DnaB-helicase binding domain of primase 376 431 2.0E-9 T 11-11-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 SUPERFAMILY SSF57783 4 97 3.06E-37 T 11-11-2016 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 TIGRFAM TIGR01391 dnaG: DNA primase 5 425 1.1E-145 T 11-11-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 SMART SM00766 456 581 4.4E-50 T 11-11-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 Pfam PF13155 Toprim-like 270 356 3.5E-14 T 11-11-2016 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 Gene3D G3DSA:3.40.1360.10 248 373 8.0E-45 T 11-11-2016 vm_RS12605 e55ea0072b1ae3db731d4cea43b34c23 587 SUPERFAMILY SSF117023 453 583 9.15E-43 T 11-11-2016 vm_RS11730 7f5bb1ceb687f289e47885f96a5f84f2 307 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 192 209 - T 11-11-2016 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 vm_RS11730 7f5bb1ceb687f289e47885f96a5f84f2 307 SUPERFAMILY SSF53697 12 255 2.45E-74 T 11-11-2016 vm_RS11730 7f5bb1ceb687f289e47885f96a5f84f2 307 Pfam PF13580 SIS domain 52 172 6.5E-12 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 vm_RS11730 7f5bb1ceb687f289e47885f96a5f84f2 307 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 13 303 2.0E-130 T 11-11-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 vm_RS11730 7f5bb1ceb687f289e47885f96a5f84f2 307 Gene3D G3DSA:3.40.50.10490 11 256 6.1E-91 T 11-11-2016 vm_RS11730 7f5bb1ceb687f289e47885f96a5f84f2 307 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 9 302 43.802 T 11-11-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 vm_RS13690 e3dc4a5f878cd8aa7db895e5106725d0 154 Gene3D G3DSA:1.10.10.10 11 82 3.1E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS13690 e3dc4a5f878cd8aa7db895e5106725d0 154 SUPERFAMILY SSF46785 12 144 1.59E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS13690 e3dc4a5f878cd8aa7db895e5106725d0 154 Pfam PF01475 Ferric uptake regulator family 20 138 4.5E-19 T 11-11-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 vm_RS00065 a5f6d34bf07e2871f975dacc34ad9b82 82 Pfam PF01206 Sulfurtransferase TusA 10 79 7.3E-23 T 11-11-2016 IPR001455 TusA-like domain vm_RS00065 a5f6d34bf07e2871f975dacc34ad9b82 82 Hamap MF_00413 Sulfurtransferase TusA [tusA]. 3 81 28.5 T 11-11-2016 IPR022931 Sulphurtransferase TusA GO:0016783 vm_RS00065 a5f6d34bf07e2871f975dacc34ad9b82 82 SUPERFAMILY SSF64307 8 80 6.02E-25 T 11-11-2016 IPR001455 TusA-like domain vm_RS00065 a5f6d34bf07e2871f975dacc34ad9b82 82 Gene3D G3DSA:3.30.110.40 8 80 1.1E-28 T 11-11-2016 IPR001455 TusA-like domain vm_RS00065 a5f6d34bf07e2871f975dacc34ad9b82 82 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 12 36 - T 11-11-2016 IPR001455 TusA-like domain vm_RS01585 47428735425ca66e96c5a68fb51c7cd4 183 PIRSF PIRSF039093 1 175 4.7E-87 T 11-11-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 vm_RS01585 47428735425ca66e96c5a68fb51c7cd4 183 SUPERFAMILY SSF56235 2 172 2.04E-57 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS01585 47428735425ca66e96c5a68fb51c7cd4 183 Pfam PF00227 Proteasome subunit 2 170 2.0E-23 T 11-11-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5687128|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-983168 vm_RS01585 47428735425ca66e96c5a68fb51c7cd4 183 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 42.08 T 11-11-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 vm_RS01585 47428735425ca66e96c5a68fb51c7cd4 183 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 172 8.5E-87 T 11-11-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 vm_RS01585 47428735425ca66e96c5a68fb51c7cd4 183 Gene3D G3DSA:3.60.20.10 2 173 4.7E-86 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 ProSitePatterns PS00099 Thiolases active site. 368 381 - T 11-11-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 PIRSF PIRSF000429 1 387 4.4E-132 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 385 1.1E-142 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 SUPERFAMILY SSF53901 263 386 1.17E-43 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 SUPERFAMILY SSF53901 1 258 7.33E-79 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 11-11-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 ProSitePatterns PS00737 Thiolases signature 2. 333 349 - T 11-11-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 Pfam PF02803 Thiolase, C-terminal domain 262 386 1.2E-49 T 11-11-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 1 387 60.11 T 11-11-2016 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 Pfam PF00108 Thiolase, N-terminal domain 4 254 8.7E-83 T 11-11-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 Gene3D G3DSA:3.40.47.10 143 183 1.6E-59 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 Gene3D G3DSA:3.40.47.10 268 386 1.6E-59 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 Gene3D G3DSA:3.40.47.10 184 267 2.9E-64 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 Gene3D G3DSA:3.40.47.10 4 126 2.9E-64 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS14805 20f7017b287ff95bb4f037b3fff87c02 387 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 4 387 3.5E-236 T 11-11-2016 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 vm_RS04240 0cfecbc8a1e634c3d720b018f8e883b8 376 SUPERFAMILY SSF64518 1 375 7.59E-99 T 11-11-2016 vm_RS04240 0cfecbc8a1e634c3d720b018f8e883b8 376 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 5.0E-44 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS04240 0cfecbc8a1e634c3d720b018f8e883b8 376 Gene3D G3DSA:1.20.1330.10 54 171 1.3E-61 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS04240 0cfecbc8a1e634c3d720b018f8e883b8 376 Gene3D G3DSA:1.20.1330.10 278 332 1.3E-61 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS04240 0cfecbc8a1e634c3d720b018f8e883b8 376 Pfam PF07196 Flagellin hook IN motif 193 247 3.7E-12 T 11-11-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 vm_RS04240 0cfecbc8a1e634c3d720b018f8e883b8 376 PRINTS PR00207 Flagellin signature 37 54 5.4E-27 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS04240 0cfecbc8a1e634c3d720b018f8e883b8 376 PRINTS PR00207 Flagellin signature 76 95 5.4E-27 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS04240 0cfecbc8a1e634c3d720b018f8e883b8 376 PRINTS PR00207 Flagellin signature 111 134 5.4E-27 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS04240 0cfecbc8a1e634c3d720b018f8e883b8 376 Pfam PF00700 Bacterial flagellin C-terminal helical region 291 375 4.2E-26 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS04340 c5fec6122c9b09d92db39e6420926710 89 PIRSF PIRSF004669 1 89 1.5E-29 T 11-11-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 vm_RS04340 c5fec6122c9b09d92db39e6420926710 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 87 7.5E-34 T 11-11-2016 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 vm_RS04340 c5fec6122c9b09d92db39e6420926710 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 1.1E-27 T 11-11-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 vm_RS04340 c5fec6122c9b09d92db39e6420926710 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 3.0E-16 T 11-11-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 vm_RS04340 c5fec6122c9b09d92db39e6420926710 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 3.0E-16 T 11-11-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 vm_RS04340 c5fec6122c9b09d92db39e6420926710 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 3.0E-16 T 11-11-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 vm_RS03365 293ffd221341969ff8c690bad7ae9c28 367 Pfam PF06725 3D domain 272 348 3.1E-20 T 11-11-2016 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 vm_RS03365 293ffd221341969ff8c690bad7ae9c28 367 Gene3D G3DSA:2.40.40.10 161 351 7.5E-42 T 11-11-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain vm_RS03365 293ffd221341969ff8c690bad7ae9c28 367 Gene3D G3DSA:2.40.40.10 73 157 3.3E-9 T 11-11-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain vm_RS03365 293ffd221341969ff8c690bad7ae9c28 367 SUPERFAMILY SSF50685 21 350 3.35E-102 T 11-11-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain vm_RS03365 293ffd221341969ff8c690bad7ae9c28 367 Pfam PF03562 MltA specific insert domain 90 252 5.9E-37 T 11-11-2016 IPR005300 Lytic transglycosylase MltA GO:0004553 vm_RS03365 293ffd221341969ff8c690bad7ae9c28 367 SMART SM00925 119 252 1.5E-67 T 11-11-2016 IPR005300 Lytic transglycosylase MltA GO:0004553 vm_RS04410 7afce5d6d10ce77de7af61939b9800a0 337 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 232 246 - T 11-11-2016 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS04410 7afce5d6d10ce77de7af61939b9800a0 337 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 120 1.0E-32 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 vm_RS04410 7afce5d6d10ce77de7af61939b9800a0 337 Gene3D G3DSA:3.30.360.10 144 315 3.9E-80 T 11-11-2016 vm_RS04410 7afce5d6d10ce77de7af61939b9800a0 337 Gene3D G3DSA:3.40.50.720 1 143 1.0E-64 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04410 7afce5d6d10ce77de7af61939b9800a0 337 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 141 319 5.3E-63 T 11-11-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 vm_RS04410 7afce5d6d10ce77de7af61939b9800a0 337 SUPERFAMILY SSF55347 131 320 1.7E-78 T 11-11-2016 vm_RS04410 7afce5d6d10ce77de7af61939b9800a0 337 SMART SM00859 6 121 1.0E-42 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 vm_RS04410 7afce5d6d10ce77de7af61939b9800a0 337 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 4 333 36.373 T 11-11-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS04410 7afce5d6d10ce77de7af61939b9800a0 337 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 6 334 5.5E-130 T 11-11-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS04410 7afce5d6d10ce77de7af61939b9800a0 337 PIRSF PIRSF000148 4 337 3.0E-134 T 11-11-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS04410 7afce5d6d10ce77de7af61939b9800a0 337 SUPERFAMILY SSF51735 5 159 1.08E-51 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14810 bb35cf1a7c96ef32c9aae99766791f37 301 SUPERFAMILY SSF53850 89 288 5.16E-23 T 11-11-2016 vm_RS14810 bb35cf1a7c96ef32c9aae99766791f37 301 Pfam PF03466 LysR substrate binding domain 89 288 1.2E-20 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS14810 bb35cf1a7c96ef32c9aae99766791f37 301 SUPERFAMILY SSF46785 5 86 1.09E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS14810 bb35cf1a7c96ef32c9aae99766791f37 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 1.6E-17 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS14810 bb35cf1a7c96ef32c9aae99766791f37 301 Gene3D G3DSA:3.40.190.10 206 255 2.1E-8 T 11-11-2016 vm_RS14810 bb35cf1a7c96ef32c9aae99766791f37 301 Gene3D G3DSA:3.40.190.10 102 201 5.4E-7 T 11-11-2016 vm_RS14810 bb35cf1a7c96ef32c9aae99766791f37 301 Gene3D G3DSA:1.10.10.10 6 86 4.6E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS08310 6dafa2327b0362cdd911849adbd1fd10 458 PRINTS PR00095 Anthranilate synthase component I signature 390 404 2.7E-18 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS08310 6dafa2327b0362cdd911849adbd1fd10 458 PRINTS PR00095 Anthranilate synthase component I signature 296 309 2.7E-18 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS08310 6dafa2327b0362cdd911849adbd1fd10 458 PRINTS PR00095 Anthranilate synthase component I signature 310 323 2.7E-18 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS08310 6dafa2327b0362cdd911849adbd1fd10 458 PRINTS PR00095 Anthranilate synthase component I signature 405 419 2.7E-18 T 11-11-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS08310 6dafa2327b0362cdd911849adbd1fd10 458 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 110 450 5.6E-123 T 11-11-2016 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543 vm_RS08310 6dafa2327b0362cdd911849adbd1fd10 458 Pfam PF00425 chorismate binding enzyme 196 448 2.3E-95 T 11-11-2016 IPR015890 Chorismate-utilising enzyme, C-terminal vm_RS08310 6dafa2327b0362cdd911849adbd1fd10 458 SUPERFAMILY SSF56322 8 457 2.62E-144 T 11-11-2016 IPR005801 ADC synthase GO:0009058 vm_RS08310 6dafa2327b0362cdd911849adbd1fd10 458 Gene3D G3DSA:3.60.120.10 6 457 1.3E-152 T 11-11-2016 IPR005801 ADC synthase GO:0009058 vm_RS08310 6dafa2327b0362cdd911849adbd1fd10 458 Pfam PF04715 Anthranilate synthase component I, N terminal region 24 156 3.5E-28 T 11-11-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 Gene3D G3DSA:3.40.50.2300 851 967 6.6E-27 T 11-11-2016 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 Gene3D G3DSA:3.30.450.20 472 611 6.3E-22 T 11-11-2016 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SUPERFAMILY SSF55785 477 589 1.92E-16 T 11-11-2016 IPR000014 PAS domain vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SUPERFAMILY SSF55874 660 830 1.17E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SUPERFAMILY SSF55781 289 451 3.73E-7 T 11-11-2016 IPR029016 GAF domain-like vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SUPERFAMILY SSF52172 991 1138 5.12E-39 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 Gene3D G3DSA:3.30.565.10 679 829 2.0E-44 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SMART SM00448 852 965 3.7E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SMART SM00448 992 1105 1.6E-35 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 PRINTS PR00344 Bacterial sensor protein C-terminal signature 818 831 7.4E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 PRINTS PR00344 Bacterial sensor protein C-terminal signature 759 773 7.4E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 PRINTS PR00344 Bacterial sensor protein C-terminal signature 777 787 7.4E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 PRINTS PR00344 Bacterial sensor protein C-terminal signature 794 812 7.4E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 Pfam PF08448 PAS fold 478 588 1.1E-10 T 11-11-2016 IPR013656 PAS fold-4 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 Gene3D G3DSA:1.20.120.160 1155 1254 2.9E-21 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 Pfam PF00072 Response regulator receiver domain 854 965 1.6E-19 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 Pfam PF00072 Response regulator receiver domain 995 1105 6.0E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SUPERFAMILY SSF52172 851 971 6.55E-27 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SMART SM00388 606 671 2.5E-25 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SUPERFAMILY SSF47384 590 672 9.02E-23 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 Pfam PF00512 His Kinase A (phospho-acceptor) domain 606 671 1.9E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 475 593 6.3E-15 T 11-11-2016 IPR000014 PAS domain vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 Gene3D G3DSA:1.10.287.130 612 667 1.3E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SMART SM00091 472 538 8.0E-9 T 11-11-2016 IPR000014 PAS domain vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 718 830 2.6E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 Pfam PF01627 Hpt domain 1163 1242 7.8E-15 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SUPERFAMILY SSF47226 1140 1282 1.57E-20 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 Gene3D G3DSA:3.40.50.2300 991 1119 4.6E-44 T 11-11-2016 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SMART SM00073 1154 1250 9.9E-9 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS08080 b27ec6de2494cb83543c54ecfb63d5e5 1325 SMART SM00387 718 834 8.3E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09670 aa30d63801219ca43c07281d111d973c 135 Pfam PF00717 Peptidase S24-like 47 107 7.8E-9 T 11-11-2016 IPR019759 Peptidase S24/S26A/S26B vm_RS09670 aa30d63801219ca43c07281d111d973c 135 Gene3D G3DSA:2.10.109.10 14 126 3.9E-33 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain vm_RS09670 aa30d63801219ca43c07281d111d973c 135 SUPERFAMILY SSF51306 3 124 8.37E-24 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 Gene3D G3DSA:3.30.450.20 24 126 7.0E-21 T 11-11-2016 vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 Gene3D G3DSA:3.30.450.20 146 242 1.1E-19 T 11-11-2016 vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 SMART SM00283 220 424 1.2E-21 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 SUPERFAMILY SSF58104 222 424 4.97E-53 T 11-11-2016 vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 SMART SM00086 206 248 0.074 T 11-11-2016 IPR001610 PAC motif vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 SMART SM00086 86 128 7.2E-5 T 11-11-2016 IPR001610 PAC motif vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 Pfam PF08448 PAS fold 146 249 5.8E-10 T 11-11-2016 IPR013656 PAS fold-4 vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 Pfam PF08447 PAS fold 35 122 8.4E-12 T 11-11-2016 IPR013655 PAS fold-3 GO:0005515 vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 282 423 2.7E-39 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 Gene3D G3DSA:1.10.287.950 243 423 2.9E-46 T 11-11-2016 vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 SUPERFAMILY SSF55785 23 129 8.03E-23 T 11-11-2016 IPR000014 PAS domain vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 145 249 7.6E-13 T 11-11-2016 IPR000014 PAS domain vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 23 132 2.8E-16 T 11-11-2016 IPR000014 PAS domain vm_RS07860 3044e8bb53d4f15345914734a04babfd 425 SUPERFAMILY SSF55785 146 248 4.36E-21 T 11-11-2016 IPR000014 PAS domain vm_RS05395 0f2681e1b25eabf13be5300dc8fcd9f8 366 Pfam PF00534 Glycosyl transferases group 1 187 335 1.0E-34 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 vm_RS05395 0f2681e1b25eabf13be5300dc8fcd9f8 366 Gene3D G3DSA:3.40.50.2000 169 334 8.7E-33 T 11-11-2016 vm_RS05395 0f2681e1b25eabf13be5300dc8fcd9f8 366 Pfam PF13439 Glycosyltransferase Family 4 21 179 2.0E-14 T 11-11-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 vm_RS05395 0f2681e1b25eabf13be5300dc8fcd9f8 366 SUPERFAMILY SSF53756 11 359 1.33E-67 T 11-11-2016 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 SUPERFAMILY SSF56719 395 561 5.75E-88 T 11-11-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 SUPERFAMILY SSF56719 731 796 5.75E-88 T 11-11-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 Pfam PF01751 Toprim domain 420 532 1.0E-18 T 11-11-2016 IPR006171 Toprim domain vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 173 3.4E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 SMART SM00387 31 175 2.2E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 SUPERFAMILY SSF54211 221 393 3.41E-59 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR00418 DNA topoisomerase II family signature 269 282 3.6E-71 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR00418 DNA topoisomerase II family signature 737 753 3.6E-71 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR00418 DNA topoisomerase II family signature 70 83 3.6E-71 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR00418 DNA topoisomerase II family signature 35 50 3.6E-71 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR00418 DNA topoisomerase II family signature 113 127 3.6E-71 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR00418 DNA topoisomerase II family signature 488 504 3.6E-71 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR00418 DNA topoisomerase II family signature 506 523 3.6E-71 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR00418 DNA topoisomerase II family signature 526 538 3.6E-71 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR00418 DNA topoisomerase II family signature 421 435 3.6E-71 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 Gene3D G3DSA:3.40.50.670 719 787 4.1E-102 T 11-11-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 Gene3D G3DSA:3.40.50.670 405 551 4.1E-102 T 11-11-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR01159 DNA gyrase subunit B signature 195 208 2.3E-87 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR01159 DNA gyrase subunit B signature 313 329 2.3E-87 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR01159 DNA gyrase subunit B signature 758 770 2.3E-87 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR01159 DNA gyrase subunit B signature 5 15 2.3E-87 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR01159 DNA gyrase subunit B signature 180 195 2.3E-87 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR01159 DNA gyrase subunit B signature 220 242 2.3E-87 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR01159 DNA gyrase subunit B signature 243 261 2.3E-87 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR01159 DNA gyrase subunit B signature 471 480 2.3E-87 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR01159 DNA gyrase subunit B signature 361 375 2.3E-87 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR01159 DNA gyrase subunit B signature 375 395 2.3E-87 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 PRINTS PR01159 DNA gyrase subunit B signature 774 790 2.3E-87 T 11-11-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 SMART SM00433 35 798 2.5E-274 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 2 805 108.816 T 11-11-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 Pfam PF00204 DNA gyrase B 221 391 3.7E-61 T 11-11-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 ProSitePatterns PS00177 DNA topoisomerase II signature. 423 431 - T 11-11-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 5 805 0.0 T 11-11-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 Gene3D G3DSA:3.30.565.10 15 214 4.4E-94 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 733 794 7.2E-31 T 11-11-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 SUPERFAMILY SSF55874 4 213 1.7E-76 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS00020 72d36ecaeef708deb757a7190ac357c1 805 Gene3D G3DSA:3.30.230.10 220 393 3.0E-77 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS08185 234b9d8764c28a6a22791974729d7fb3 502 SMART SM00382 34 221 3.8E-7 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS08185 234b9d8764c28a6a22791974729d7fb3 502 SMART SM00382 284 479 2.0 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS08185 234b9d8764c28a6a22791974729d7fb3 502 SUPERFAMILY SSF52540 249 489 1.84E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08185 234b9d8764c28a6a22791974729d7fb3 502 Gene3D G3DSA:3.40.50.300 7 230 4.7E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08185 234b9d8764c28a6a22791974729d7fb3 502 Gene3D G3DSA:3.40.50.300 258 494 4.6E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08185 234b9d8764c28a6a22791974729d7fb3 502 SUPERFAMILY SSF52540 8 229 1.71E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08185 234b9d8764c28a6a22791974729d7fb3 502 Pfam PF00005 ABC transporter 25 174 9.8E-27 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS08185 234b9d8764c28a6a22791974729d7fb3 502 Pfam PF00005 ABC transporter 276 430 7.3E-18 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS08185 234b9d8764c28a6a22791974729d7fb3 502 ProSitePatterns PS00211 ABC transporters family signature. 403 417 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 SUPERFAMILY SSF63829 130 222 2.81E-5 T 11-11-2016 vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 SUPERFAMILY SSF63829 34 85 2.81E-5 T 11-11-2016 vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 SUPERFAMILY SSF63829 191 327 3.92E-7 T 11-11-2016 vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 SUPERFAMILY SSF63829 426 492 3.92E-7 T 11-11-2016 vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 Gene3D G3DSA:2.120.10.30 391 459 2.0E-6 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 Gene3D G3DSA:2.120.10.30 40 75 6.3E-6 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 Gene3D G3DSA:2.120.10.30 179 246 6.3E-6 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 SMART SM00267 798 968 3.3E-34 T 11-11-2016 IPR000160 GGDEF domain vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 SUPERFAMILY SSF63829 395 578 5.01E-11 T 11-11-2016 vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 Gene3D G3DSA:3.30.70.270 812 966 8.4E-44 T 11-11-2016 vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 Pfam PF07495 Y_Y_Y domain 685 747 1.4E-18 T 11-11-2016 IPR011123 Two component regulator three Y vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 SUPERFAMILY SSF55073 814 966 1.8E-39 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 Pfam PF00990 Diguanylate cyclase, GGDEF domain 811 964 1.1E-34 T 11-11-2016 IPR000160 GGDEF domain vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 Pfam PF07494 Two component regulator propeller 46 68 2.3E-4 T 11-11-2016 IPR011110 Two component regulator propeller vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 Pfam PF07494 Two component regulator propeller 420 443 2.5E-6 T 11-11-2016 IPR011110 Two component regulator propeller vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 Pfam PF07494 Two component regulator propeller 293 315 0.0043 T 11-11-2016 IPR011110 Two component regulator propeller vm_RS08070 4e6f408ba0b0f55da74f4a9d81b37561 978 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 806 967 6.3E-38 T 11-11-2016 IPR000160 GGDEF domain vm_RS13200 2310ee756ddec1e89f4542e9a935561f 267 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 267 48.328 T 11-11-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 vm_RS13200 2310ee756ddec1e89f4542e9a935561f 267 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 2 266 1.3E-116 T 11-11-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 vm_RS13200 2310ee756ddec1e89f4542e9a935561f 267 Pfam PF00149 Calcineurin-like phosphoesterase 5 131 7.5E-12 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 vm_RS13200 2310ee756ddec1e89f4542e9a935561f 267 PIRSF PIRSF000903 1 267 3.2E-121 T 11-11-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 vm_RS13200 2310ee756ddec1e89f4542e9a935561f 267 SUPERFAMILY SSF56300 4 252 1.74E-56 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS13200 2310ee756ddec1e89f4542e9a935561f 267 Gene3D G3DSA:3.60.21.10 4 130 3.7E-56 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS13200 2310ee756ddec1e89f4542e9a935561f 267 Gene3D G3DSA:3.60.21.10 167 262 3.7E-56 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 2.7E-220 T 11-11-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 SMART SM00357 52 118 1.2E-17 T 11-11-2016 IPR011129 Cold shock protein GO:0003676 vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 Gene3D G3DSA:3.40.50.300 132 418 4.4E-107 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 SUPERFAMILY SSF52540 90 371 1.75E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 SUPERFAMILY SSF50249 48 125 4.97E-29 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 SMART SM00959 5 47 1.3E-18 T 11-11-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 Gene3D G3DSA:2.40.50.140 49 117 2.8E-36 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 Gene3D G3DSA:1.10.720.10 1 47 2.8E-22 T 11-11-2016 vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 7.8E-18 T 11-11-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 2.8E-23 T 11-11-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 4.9E-32 T 11-11-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 SMART SM00382 170 355 1.0E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 251.988 T 11-11-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 vm_RS14105 ab9aeab9fc42127464560d19068780d3 419 SUPERFAMILY SSF68912 1 46 4.71E-12 T 11-11-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 vm_RS12105 9151ac10db53892e5bdfcdb309ccff05 341 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 5 39 3.6E-6 T 11-11-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain vm_RS12105 9151ac10db53892e5bdfcdb309ccff05 341 Gene3D G3DSA:1.10.3720.10 93 296 5.2E-19 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12105 9151ac10db53892e5bdfcdb309ccff05 341 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 300 2.0E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12105 9151ac10db53892e5bdfcdb309ccff05 341 SUPERFAMILY SSF161098 96 278 1.57E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS07105 afc93966a3ac25e2cb008db8ab581e59 323 Gene3D G3DSA:1.10.620.20 6 284 3.4E-87 T 11-11-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: R-HSA-499943 vm_RS07105 afc93966a3ac25e2cb008db8ab581e59 323 PIRSF PIRSF000355 3 320 8.1E-85 T 11-11-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07105 afc93966a3ac25e2cb008db8ab581e59 323 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 100 116 - T 11-11-2016 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07105 afc93966a3ac25e2cb008db8ab581e59 323 SUPERFAMILY SSF47240 6 323 1.38E-100 T 11-11-2016 IPR009078 Ferritin-like superfamily vm_RS07105 afc93966a3ac25e2cb008db8ab581e59 323 Pfam PF00268 Ribonucleotide reductase, small chain 12 284 6.3E-83 T 11-11-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07105 afc93966a3ac25e2cb008db8ab581e59 323 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 10 323 3.8E-144 T 11-11-2016 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 vm_RS05330 33bf243937d9c68f58306dec8f8d14fc 619 Gene3D G3DSA:3.10.50.40 263 385 5.2E-40 T 11-11-2016 vm_RS05330 33bf243937d9c68f58306dec8f8d14fc 619 SUPERFAMILY SSF109998 203 243 7.85E-39 T 11-11-2016 IPR027304 Trigger factor/SurA domain vm_RS05330 33bf243937d9c68f58306dec8f8d14fc 619 SUPERFAMILY SSF109998 39 169 7.85E-39 T 11-11-2016 IPR027304 Trigger factor/SurA domain vm_RS05330 33bf243937d9c68f58306dec8f8d14fc 619 Pfam PF13624 SurA N-terminal domain 1 166 1.7E-51 T 11-11-2016 vm_RS05330 33bf243937d9c68f58306dec8f8d14fc 619 Pfam PF13616 PPIC-type PPIASE domain 262 362 3.2E-24 T 11-11-2016 vm_RS05330 33bf243937d9c68f58306dec8f8d14fc 619 SUPERFAMILY SSF54534 224 361 2.16E-29 T 11-11-2016 vm_RS09600 5d17c1a04e0664769793100611871088 652 SUPERFAMILY SSF81345 339 652 1.31E-65 T 11-11-2016 IPR029022 ABC transporter, BtuC-like vm_RS09600 5d17c1a04e0664769793100611871088 652 Pfam PF01032 FecCD transport family 14 323 3.9E-73 T 11-11-2016 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 vm_RS09600 5d17c1a04e0664769793100611871088 652 Pfam PF01032 FecCD transport family 358 652 8.6E-69 T 11-11-2016 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 vm_RS09600 5d17c1a04e0664769793100611871088 652 Gene3D G3DSA:1.10.3470.10 340 652 2.1E-73 T 11-11-2016 IPR029022 ABC transporter, BtuC-like vm_RS09600 5d17c1a04e0664769793100611871088 652 SUPERFAMILY SSF81345 7 323 2.35E-63 T 11-11-2016 IPR029022 ABC transporter, BtuC-like vm_RS09600 5d17c1a04e0664769793100611871088 652 Gene3D G3DSA:1.10.3470.10 8 325 6.0E-77 T 11-11-2016 IPR029022 ABC transporter, BtuC-like vm_RS02895 eddf77cafad7d36d4cda0febf3574775 579 Pfam PF01368 DHH family 71 206 9.6E-11 T 11-11-2016 IPR001667 DDH domain vm_RS02895 eddf77cafad7d36d4cda0febf3574775 579 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 21 575 3.2E-157 T 11-11-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 vm_RS02895 eddf77cafad7d36d4cda0febf3574775 579 SUPERFAMILY SSF64182 45 463 4.84E-118 T 11-11-2016 vm_RS02895 eddf77cafad7d36d4cda0febf3574775 579 Pfam PF02272 DHHA1 domain 380 448 3.0E-15 T 11-11-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 vm_RS11405 ffaaec1a47140a605454205af3afe421 64 SUPERFAMILY SSF140319 1 62 2.22E-28 T 11-11-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 vm_RS11405 ffaaec1a47140a605454205af3afe421 64 Gene3D G3DSA:1.10.10.600 1 64 1.2E-34 T 11-11-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 vm_RS11405 ffaaec1a47140a605454205af3afe421 64 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 2 64 7.2E-35 T 11-11-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 vm_RS11405 ffaaec1a47140a605454205af3afe421 64 PIRSF PIRSF039003 1 64 5.2E-34 T 11-11-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 vm_RS11405 ffaaec1a47140a605454205af3afe421 64 Pfam PF04384 Iron-sulphur cluster assembly 1 64 1.3E-33 T 11-11-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 647 1.1E-226 T 11-11-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 SUPERFAMILY SSF47323 658 940 4.49E-73 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 Pfam PF06827 Zinc finger found in FPG and IleRS 910 937 1.6E-7 T 11-11-2016 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 853 2.9E-293 T 11-11-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 Pfam PF08264 Anticodon-binding domain of tRNA 691 853 2.1E-25 T 11-11-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 SUPERFAMILY SSF52374 408 653 5.03E-137 T 11-11-2016 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 SUPERFAMILY SSF52374 4 202 5.03E-137 T 11-11-2016 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 940 21.488 T 11-11-2016 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 Gene3D G3DSA:3.90.740.10 207 394 5.3E-55 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 532 545 4.5E-32 T 11-11-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 241 264 4.5E-32 T 11-11-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 406 421 4.5E-32 T 11-11-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 4.5E-32 T 11-11-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 567 576 4.5E-32 T 11-11-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 Gene3D G3DSA:1.10.730.10 647 839 3.4E-39 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS11765 e4b158b62e10df832648215cca4770a2 949 Gene3D G3DSA:3.40.50.620 411 643 2.7E-137 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS11765 e4b158b62e10df832648215cca4770a2 949 Gene3D G3DSA:3.40.50.620 14 200 2.7E-137 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS11765 e4b158b62e10df832648215cca4770a2 949 SUPERFAMILY SSF50677 205 408 1.05E-53 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 vm_RS11795 94433e6ceccc72023affc8ee43fec308 296 Gene3D G3DSA:1.10.10.10 3 81 2.2E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11795 94433e6ceccc72023affc8ee43fec308 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 5.2E-16 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11795 94433e6ceccc72023affc8ee43fec308 296 SUPERFAMILY SSF46785 2 85 3.38E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11795 94433e6ceccc72023affc8ee43fec308 296 Pfam PF03466 LysR substrate binding domain 97 288 4.1E-10 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS11795 94433e6ceccc72023affc8ee43fec308 296 Gene3D G3DSA:3.40.190.10 121 227 3.8E-6 T 11-11-2016 vm_RS11795 94433e6ceccc72023affc8ee43fec308 296 SUPERFAMILY SSF53850 90 288 1.76E-21 T 11-11-2016 vm_RS13015 f00468a69e4f87fb942d5008d64f1d73 243 Pfam PF04452 RNA methyltransferase 19 236 3.3E-72 T 11-11-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS13015 f00468a69e4f87fb942d5008d64f1d73 243 Gene3D G3DSA:3.40.1280.10 75 242 5.5E-60 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal vm_RS13015 f00468a69e4f87fb942d5008d64f1d73 243 SUPERFAMILY SSF88697 2 70 1.54E-16 T 11-11-2016 IPR015947 PUA-like domain vm_RS13015 f00468a69e4f87fb942d5008d64f1d73 243 SUPERFAMILY SSF75217 75 242 7.41E-52 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases vm_RS13015 f00468a69e4f87fb942d5008d64f1d73 243 Gene3D G3DSA:2.40.240.20 1 71 1.5E-25 T 11-11-2016 vm_RS13015 f00468a69e4f87fb942d5008d64f1d73 243 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 2 242 6.6E-84 T 11-11-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS13015 f00468a69e4f87fb942d5008d64f1d73 243 PIRSF PIRSF015601 2 242 1.8E-54 T 11-11-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS09155 2b0c4443148a9a1562846f5ae13d3010 741 SUPERFAMILY SSF53659 5 740 0.0 T 11-11-2016 vm_RS09155 2b0c4443148a9a1562846f5ae13d3010 741 PIRSF PIRSF009407 1 741 0.0 T 11-11-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 vm_RS09155 2b0c4443148a9a1562846f5ae13d3010 741 Gene3D G3DSA:3.40.718.10 341 364 8.8E-35 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 vm_RS09155 2b0c4443148a9a1562846f5ae13d3010 741 Gene3D G3DSA:3.40.718.10 540 646 8.8E-35 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 vm_RS09155 2b0c4443148a9a1562846f5ae13d3010 741 Gene3D G3DSA:3.40.718.10 188 289 8.8E-35 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 vm_RS09155 2b0c4443148a9a1562846f5ae13d3010 741 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 1 740 0.0 T 11-11-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 vm_RS09155 2b0c4443148a9a1562846f5ae13d3010 741 Pfam PF03971 Monomeric isocitrate dehydrogenase 7 740 0.0 T 11-11-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 vm_RS12980 72f6450456df2e612f549c7a6258d75a 652 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 635 652 - T 11-11-2016 IPR010917 TonB-dependent receptor, conserved site vm_RS12980 72f6450456df2e612f549c7a6258d75a 652 Gene3D G3DSA:2.170.130.10 23 159 9.5E-42 T 11-11-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 vm_RS12980 72f6450456df2e612f549c7a6258d75a 652 Gene3D G3DSA:2.40.170.20 160 652 2.7E-102 T 11-11-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 vm_RS12980 72f6450456df2e612f549c7a6258d75a 652 Pfam PF00593 TonB dependent receptor 397 650 8.9E-40 T 11-11-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 vm_RS12980 72f6450456df2e612f549c7a6258d75a 652 SUPERFAMILY SSF56935 33 652 2.56E-125 T 11-11-2016 vm_RS12980 72f6450456df2e612f549c7a6258d75a 652 Pfam PF07715 TonB-dependent Receptor Plug Domain 47 156 1.4E-28 T 11-11-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 vm_RS12980 72f6450456df2e612f549c7a6258d75a 652 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 40 - T 11-11-2016 IPR010916 TonB box, conserved site vm_RS08855 91023996fe2b72dd925112453ff73d7b 546 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 122 136 2.9E-13 T 11-11-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 vm_RS08855 91023996fe2b72dd925112453ff73d7b 546 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 220 232 2.9E-13 T 11-11-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 vm_RS08855 91023996fe2b72dd925112453ff73d7b 546 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 64 79 2.9E-13 T 11-11-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 vm_RS08855 91023996fe2b72dd925112453ff73d7b 546 Gene3D G3DSA:2.40.10.10 33 69 9.0E-14 T 11-11-2016 vm_RS08855 91023996fe2b72dd925112453ff73d7b 546 Gene3D G3DSA:2.40.10.10 130 274 4.2E-37 T 11-11-2016 vm_RS08855 91023996fe2b72dd925112453ff73d7b 546 Pfam PF00089 Trypsin 33 269 7.0E-50 T 11-11-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 vm_RS08855 91023996fe2b72dd925112453ff73d7b 546 SMART SM00020 32 269 2.6E-71 T 11-11-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 vm_RS08855 91023996fe2b72dd925112453ff73d7b 546 SUPERFAMILY SSF50494 6 274 1.36E-67 T 11-11-2016 IPR009003 Peptidase S1, PA clan vm_RS08855 91023996fe2b72dd925112453ff73d7b 546 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 74 79 - T 11-11-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 vm_RS08855 91023996fe2b72dd925112453ff73d7b 546 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 221 232 - T 11-11-2016 IPR033116 Serine proteases, trypsin family, serine active site vm_RS08855 91023996fe2b72dd925112453ff73d7b 546 Gene3D G3DSA:2.40.10.10 70 129 3.7E-20 T 11-11-2016 vm_RS08855 91023996fe2b72dd925112453ff73d7b 546 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 524 544 3.8E-4 T 11-11-2016 IPR020008 GlyGly-CTERM domain vm_RS07880 c09cc043ded9cc740e478dcc6b46029b 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 73 3.9E-16 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS07880 c09cc043ded9cc740e478dcc6b46029b 311 Gene3D G3DSA:1.10.10.10 12 97 1.1E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS07880 c09cc043ded9cc740e478dcc6b46029b 311 SUPERFAMILY SSF53850 100 303 3.98E-37 T 11-11-2016 vm_RS07880 c09cc043ded9cc740e478dcc6b46029b 311 SUPERFAMILY SSF46785 10 119 2.47E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS07880 c09cc043ded9cc740e478dcc6b46029b 311 Gene3D G3DSA:3.40.190.10 187 268 7.7E-15 T 11-11-2016 vm_RS07880 c09cc043ded9cc740e478dcc6b46029b 311 Gene3D G3DSA:3.40.190.10 103 186 1.6E-15 T 11-11-2016 vm_RS07880 c09cc043ded9cc740e478dcc6b46029b 311 Pfam PF03466 LysR substrate binding domain 100 299 1.1E-38 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 Gene3D G3DSA:1.10.150.20 721 827 5.6E-36 T 11-11-2016 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 SMART SM00474 339 526 6.2E-40 T 11-11-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 Pfam PF01612 3'-5' exonuclease 339 525 9.4E-39 T 11-11-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 PRINTS PR00868 DNA-polymerase family A (pol I) signature 664 686 2.5E-78 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 PRINTS PR00868 DNA-polymerase family A (pol I) signature 739 752 2.5E-78 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 PRINTS PR00868 DNA-polymerase family A (pol I) signature 687 702 2.5E-78 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 PRINTS PR00868 DNA-polymerase family A (pol I) signature 800 811 2.5E-78 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 PRINTS PR00868 DNA-polymerase family A (pol I) signature 854 870 2.5E-78 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 PRINTS PR00868 DNA-polymerase family A (pol I) signature 763 788 2.5E-78 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 PRINTS PR00868 DNA-polymerase family A (pol I) signature 822 833 2.5E-78 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 PRINTS PR00868 DNA-polymerase family A (pol I) signature 709 732 2.5E-78 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 PRINTS PR00868 DNA-polymerase family A (pol I) signature 885 898 2.5E-78 T 11-11-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 SUPERFAMILY SSF88723 7 170 4.91E-57 T 11-11-2016 IPR029060 PIN domain-like vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 Gene3D G3DSA:3.30.420.10 338 551 4.8E-85 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 ProSitePatterns PS00447 DNA polymerase family A signature. 763 782 - T 11-11-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 SUPERFAMILY SSF47807 171 290 9.12E-32 T 11-11-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 TIGRFAM TIGR00593 pola: DNA polymerase I 9 938 1.1E-284 T 11-11-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 SMART SM00279 173 208 7.2E-14 T 11-11-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 SUPERFAMILY SSF56672 531 938 9.23E-160 T 11-11-2016 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 SMART SM00475 7 267 5.7E-126 T 11-11-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 Gene3D G3DSA:3.30.70.370 673 720 1.7E-65 T 11-11-2016 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 Gene3D G3DSA:3.30.70.370 828 938 1.7E-65 T 11-11-2016 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 Gene3D G3DSA:1.10.150.20 187 253 3.3E-27 T 11-11-2016 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 Gene3D G3DSA:1.20.1060.10 552 672 3.5E-37 T 11-11-2016 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 SUPERFAMILY SSF53098 342 527 3.8E-54 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 170 3.8E-54 T 11-11-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 171 271 3.4E-30 T 11-11-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 Pfam PF00476 DNA polymerase family A 561 935 9.5E-157 T 11-11-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 Gene3D G3DSA:3.40.50.1010 8 186 2.6E-74 T 11-11-2016 IPR029060 PIN domain-like vm_RS00500 538041207c245afcbbddcb2ffa21a93f 938 SMART SM00482 695 902 3.5E-117 T 11-11-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS09630 36955e3ba7e15c7573034031ebb37ebe 346 Gene3D G3DSA:3.30.420.10 159 319 9.1E-24 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS09630 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF00665 Integrase core domain 161 283 1.3E-20 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 vm_RS09630 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF13551 Winged helix-turn helix 11 74 6.3E-20 T 11-11-2016 vm_RS09630 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF53098 160 333 3.32E-38 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS09630 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF46689 18 113 1.34E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS13385 36955e3ba7e15c7573034031ebb37ebe 346 Gene3D G3DSA:3.30.420.10 159 319 9.1E-24 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS13385 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF00665 Integrase core domain 161 283 1.3E-20 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 vm_RS13385 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF13551 Winged helix-turn helix 11 74 6.3E-20 T 11-11-2016 vm_RS13385 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF53098 160 333 3.32E-38 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS13385 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF46689 18 113 1.34E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS06495 36955e3ba7e15c7573034031ebb37ebe 346 Gene3D G3DSA:3.30.420.10 159 319 9.1E-24 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS06495 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF00665 Integrase core domain 161 283 1.3E-20 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 vm_RS06495 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF13551 Winged helix-turn helix 11 74 6.3E-20 T 11-11-2016 vm_RS06495 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF53098 160 333 3.32E-38 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS06495 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF46689 18 113 1.34E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS13355 36955e3ba7e15c7573034031ebb37ebe 346 Gene3D G3DSA:3.30.420.10 159 319 9.1E-24 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS13355 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF00665 Integrase core domain 161 283 1.3E-20 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 vm_RS13355 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF13551 Winged helix-turn helix 11 74 6.3E-20 T 11-11-2016 vm_RS13355 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF53098 160 333 3.32E-38 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS13355 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF46689 18 113 1.34E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS03160 36955e3ba7e15c7573034031ebb37ebe 346 Gene3D G3DSA:3.30.420.10 159 319 9.1E-24 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS03160 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF00665 Integrase core domain 161 283 1.3E-20 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 vm_RS03160 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF13551 Winged helix-turn helix 11 74 6.3E-20 T 11-11-2016 vm_RS03160 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF53098 160 333 3.32E-38 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS03160 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF46689 18 113 1.34E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS06005 36955e3ba7e15c7573034031ebb37ebe 346 Gene3D G3DSA:3.30.420.10 159 319 9.1E-24 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS06005 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF00665 Integrase core domain 161 283 1.3E-20 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 vm_RS06005 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF13551 Winged helix-turn helix 11 74 6.3E-20 T 11-11-2016 vm_RS06005 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF53098 160 333 3.32E-38 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS06005 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF46689 18 113 1.34E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS11170 36955e3ba7e15c7573034031ebb37ebe 346 Gene3D G3DSA:3.30.420.10 159 319 9.1E-24 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS11170 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF00665 Integrase core domain 161 283 1.3E-20 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 vm_RS11170 36955e3ba7e15c7573034031ebb37ebe 346 Pfam PF13551 Winged helix-turn helix 11 74 6.3E-20 T 11-11-2016 vm_RS11170 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF53098 160 333 3.32E-38 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS11170 36955e3ba7e15c7573034031ebb37ebe 346 SUPERFAMILY SSF46689 18 113 1.34E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS10085 67633b8f60512e38ba349a80670c9cdc 230 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 6 208 7.9E-90 T 11-11-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 vm_RS10085 67633b8f60512e38ba349a80670c9cdc 230 PIRSF PIRSF006102 1 220 4.2E-77 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 vm_RS10085 67633b8f60512e38ba349a80670c9cdc 230 Hamap MF_00478 Electron transport complex subunit RsxE [rsxE]. 1 210 28.115 T 11-11-2016 IPR010968 Electron transport complex, RsxE GO:0016020|GO:0022900 vm_RS10085 67633b8f60512e38ba349a80670c9cdc 230 Pfam PF02508 Rnf-Nqr subunit, membrane protein 7 200 4.8E-65 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 vm_RS01880 2f3409c57841c268b070b954338865f8 69 PIRSF PIRSF006169 1 68 2.0E-35 T 11-11-2016 IPR010648 Uncharacterised protein family UPF0270 vm_RS01880 2f3409c57841c268b070b954338865f8 69 Gene3D G3DSA:1.10.10.610 1 65 4.7E-36 T 11-11-2016 IPR010648 Uncharacterised protein family UPF0270 vm_RS01880 2f3409c57841c268b070b954338865f8 69 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 65 8.2E-35 T 11-11-2016 IPR010648 Uncharacterised protein family UPF0270 vm_RS01880 2f3409c57841c268b070b954338865f8 69 SUPERFAMILY SSF118001 1 65 1.23E-28 T 11-11-2016 IPR010648 Uncharacterised protein family UPF0270 vm_RS01880 2f3409c57841c268b070b954338865f8 69 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 55 3.0E-24 T 11-11-2016 IPR010648 Uncharacterised protein family UPF0270 vm_RS13990 25c29602bc00172f857e4fc0e04c92a4 142 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 2.5E-22 T 11-11-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 vm_RS13990 25c29602bc00172f857e4fc0e04c92a4 142 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 11-11-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS13990 25c29602bc00172f857e4fc0e04c92a4 142 SUPERFAMILY SSF46906 68 141 3.4E-24 T 11-11-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 vm_RS13990 25c29602bc00172f857e4fc0e04c92a4 142 Gene3D G3DSA:1.10.10.250 73 141 3.1E-28 T 11-11-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 vm_RS13990 25c29602bc00172f857e4fc0e04c92a4 142 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 74 1.0E-15 T 11-11-2016 vm_RS13990 25c29602bc00172f857e4fc0e04c92a4 142 SUPERFAMILY SSF54747 3 73 1.11E-29 T 11-11-2016 IPR020784 Ribosomal protein L11, N-terminal vm_RS13990 25c29602bc00172f857e4fc0e04c92a4 142 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 3.3E-29 T 11-11-2016 IPR020784 Ribosomal protein L11, N-terminal vm_RS13990 25c29602bc00172f857e4fc0e04c92a4 142 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.507 T 11-11-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 vm_RS13990 25c29602bc00172f857e4fc0e04c92a4 142 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 1.7E-63 T 11-11-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13990 25c29602bc00172f857e4fc0e04c92a4 142 Gene3D G3DSA:3.30.1550.10 2 72 1.5E-37 T 11-11-2016 IPR020784 Ribosomal protein L11, N-terminal vm_RS13990 25c29602bc00172f857e4fc0e04c92a4 142 SMART SM00649 9 141 6.6E-81 T 11-11-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 vm_RS10910 94b2ef1bcaa6d21ab69738aba57d3ea6 314 Gene3D G3DSA:1.10.260.40 20 71 7.8E-5 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS10910 94b2ef1bcaa6d21ab69738aba57d3ea6 314 Pfam PF09077 Mu B transposition protein, C terminal 235 310 3.7E-22 T 11-11-2016 IPR009084 B transposition protein, C-terminal GO:0003677|GO:0006313 vm_RS10910 94b2ef1bcaa6d21ab69738aba57d3ea6 314 SUPERFAMILY SSF52540 99 258 2.31E-10 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10910 94b2ef1bcaa6d21ab69738aba57d3ea6 314 Pfam PF13401 AAA domain 104 220 2.3E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS10910 94b2ef1bcaa6d21ab69738aba57d3ea6 314 Gene3D G3DSA:3.40.50.300 99 215 1.9E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10910 94b2ef1bcaa6d21ab69738aba57d3ea6 314 SUPERFAMILY SSF47681 234 313 2.88E-24 T 11-11-2016 IPR009084 B transposition protein, C-terminal GO:0003677|GO:0006313 vm_RS10910 94b2ef1bcaa6d21ab69738aba57d3ea6 314 Gene3D G3DSA:1.10.1180.10 234 313 4.3E-28 T 11-11-2016 IPR009084 B transposition protein, C-terminal GO:0003677|GO:0006313 vm_RS01200 94b2ef1bcaa6d21ab69738aba57d3ea6 314 Gene3D G3DSA:1.10.260.40 20 71 7.8E-5 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS01200 94b2ef1bcaa6d21ab69738aba57d3ea6 314 Pfam PF09077 Mu B transposition protein, C terminal 235 310 3.7E-22 T 11-11-2016 IPR009084 B transposition protein, C-terminal GO:0003677|GO:0006313 vm_RS01200 94b2ef1bcaa6d21ab69738aba57d3ea6 314 SUPERFAMILY SSF52540 99 258 2.31E-10 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01200 94b2ef1bcaa6d21ab69738aba57d3ea6 314 Pfam PF13401 AAA domain 104 220 2.3E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS01200 94b2ef1bcaa6d21ab69738aba57d3ea6 314 Gene3D G3DSA:3.40.50.300 99 215 1.9E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01200 94b2ef1bcaa6d21ab69738aba57d3ea6 314 SUPERFAMILY SSF47681 234 313 2.88E-24 T 11-11-2016 IPR009084 B transposition protein, C-terminal GO:0003677|GO:0006313 vm_RS01200 94b2ef1bcaa6d21ab69738aba57d3ea6 314 Gene3D G3DSA:1.10.1180.10 234 313 4.3E-28 T 11-11-2016 IPR009084 B transposition protein, C-terminal GO:0003677|GO:0006313 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 PIRSF PIRSF016599 5 489 1.4E-219 T 11-11-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 Pfam PF01546 Peptidase family M20/M25/M40 77 472 1.3E-20 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 TIGRFAM TIGR01893 aa-his-dipept: Xaa-His dipeptidase 14 486 6.7E-183 T 11-11-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 Gene3D G3DSA:3.40.630.10 401 486 1.9E-106 T 11-11-2016 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 Gene3D G3DSA:3.40.630.10 7 185 1.9E-106 T 11-11-2016 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 SUPERFAMILY SSF53187 401 486 3.55E-62 T 11-11-2016 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 SUPERFAMILY SSF53187 15 186 3.55E-62 T 11-11-2016 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 PRINTS PR00934 X-His dipeptidase (M25) signature 367 385 2.1E-89 T 11-11-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 PRINTS PR00934 X-His dipeptidase (M25) signature 163 181 2.1E-89 T 11-11-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 PRINTS PR00934 X-His dipeptidase (M25) signature 84 103 2.1E-89 T 11-11-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 PRINTS PR00934 X-His dipeptidase (M25) signature 210 227 2.1E-89 T 11-11-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 PRINTS PR00934 X-His dipeptidase (M25) signature 454 476 2.1E-89 T 11-11-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 PRINTS PR00934 X-His dipeptidase (M25) signature 255 274 2.1E-89 T 11-11-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 PRINTS PR00934 X-His dipeptidase (M25) signature 105 123 2.1E-89 T 11-11-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 PRINTS PR00934 X-His dipeptidase (M25) signature 432 448 2.1E-89 T 11-11-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 PRINTS PR00934 X-His dipeptidase (M25) signature 139 156 2.1E-89 T 11-11-2016 IPR001160 Peptidase M20C, Xaa-His dipeptidase GO:0006508 vm_RS03515 ab6db2cb184b975e99e99ecd344a9286 490 Pfam PF07687 Peptidase dimerisation domain 212 295 4.7E-7 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain vm_RS15075 4721d189ef55dd3aa574b39164565390 248 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 46 59 - T 11-11-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 vm_RS15075 4721d189ef55dd3aa574b39164565390 248 SMART SM00062 24 245 6.4E-73 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS15075 4721d189ef55dd3aa574b39164565390 248 Gene3D G3DSA:3.40.190.10 101 200 5.8E-29 T 11-11-2016 vm_RS15075 4721d189ef55dd3aa574b39164565390 248 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 25 243 6.3E-57 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS15075 4721d189ef55dd3aa574b39164565390 248 SUPERFAMILY SSF53850 1 246 3.16E-58 T 11-11-2016 vm_RS15075 4721d189ef55dd3aa574b39164565390 248 Gene3D G3DSA:3.40.190.10 23 100 3.3E-35 T 11-11-2016 vm_RS15075 4721d189ef55dd3aa574b39164565390 248 Gene3D G3DSA:3.40.190.10 204 247 3.3E-35 T 11-11-2016 vm_RS15075 4721d189ef55dd3aa574b39164565390 248 SMART SM00079 24 244 0.0054 T 11-11-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 vm_RS14355 5b76148bef21506439db7bdc71ceedbc 424 SUPERFAMILY SSF51735 7 191 7.81E-44 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14355 5b76148bef21506439db7bdc71ceedbc 424 SUPERFAMILY SSF52413 303 415 1.28E-24 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 vm_RS14355 5b76148bef21506439db7bdc71ceedbc 424 SMART SM00984 317 417 1.1E-27 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 vm_RS14355 5b76148bef21506439db7bdc71ceedbc 424 PIRSF PIRSF000124 6 420 1.5E-50 T 11-11-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 vm_RS14355 5b76148bef21506439db7bdc71ceedbc 424 Gene3D G3DSA:3.40.50.720 4 222 4.7E-53 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14355 5b76148bef21506439db7bdc71ceedbc 424 PIRSF PIRSF500136 1 423 6.4E-147 T 11-11-2016 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 vm_RS14355 5b76148bef21506439db7bdc71ceedbc 424 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 7 180 3.6E-34 T 11-11-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 vm_RS14355 5b76148bef21506439db7bdc71ceedbc 424 Gene3D G3DSA:3.40.50.720 232 416 2.3E-40 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14355 5b76148bef21506439db7bdc71ceedbc 424 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 202 290 1.4E-24 T 11-11-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 vm_RS14355 5b76148bef21506439db7bdc71ceedbc 424 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 317 415 2.1E-19 T 11-11-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 vm_RS14355 5b76148bef21506439db7bdc71ceedbc 424 SUPERFAMILY SSF48179 201 292 5.61E-24 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 vm_RS14355 5b76148bef21506439db7bdc71ceedbc 424 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 7 410 4.9E-116 T 11-11-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 vm_RS04485 c96650a952fefb63f5c846a69a1e843b 130 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 11 35 - T 11-11-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04485 c96650a952fefb63f5c846a69a1e843b 130 Gene3D G3DSA:1.20.1300.10 6 130 2.0E-40 T 11-11-2016 vm_RS04485 c96650a952fefb63f5c846a69a1e843b 130 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 8 124 4.9E-29 T 11-11-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04485 c96650a952fefb63f5c846a69a1e843b 130 PIRSF PIRSF000178 2 130 1.2E-31 T 11-11-2016 vm_RS04485 c96650a952fefb63f5c846a69a1e843b 130 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 86 99 - T 11-11-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04485 c96650a952fefb63f5c846a69a1e843b 130 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 9 127 2.3E-39 T 11-11-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04485 c96650a952fefb63f5c846a69a1e843b 130 SUPERFAMILY SSF81343 8 130 1.55E-33 T 11-11-2016 vm_RS10615 8d6266eeab99dafea02249e76981fa43 225 SUPERFAMILY SSF161098 15 210 6.67E-49 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS10615 8d6266eeab99dafea02249e76981fa43 225 Gene3D G3DSA:1.10.3720.10 13 224 1.8E-45 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS10615 8d6266eeab99dafea02249e76981fa43 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 223 8.2E-24 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS10235 7f46992705d0982875f12f807b63b9d5 304 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 295 7.9E-102 T 11-11-2016 IPR010099 Epimerase family protein SDR39U1 vm_RS10235 7f46992705d0982875f12f807b63b9d5 304 Gene3D G3DSA:3.90.25.10 202 276 6.1E-10 T 11-11-2016 vm_RS10235 7f46992705d0982875f12f807b63b9d5 304 SUPERFAMILY SSF51735 1 293 2.8E-45 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS10235 7f46992705d0982875f12f807b63b9d5 304 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 226 3.0E-21 T 11-11-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 vm_RS10235 7f46992705d0982875f12f807b63b9d5 304 Pfam PF08338 Domain of unknown function (DUF1731) 253 299 1.4E-14 T 11-11-2016 IPR013549 Domain of unknown function DUF1731 vm_RS10235 7f46992705d0982875f12f807b63b9d5 304 Gene3D G3DSA:3.40.50.720 1 201 2.7E-22 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 Gene3D G3DSA:3.40.120.10 252 368 9.3E-30 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 255 5.6E-19 T 11-11-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 4 445 46.967 T 11-11-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 259 367 8.5E-30 T 11-11-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 8 443 5.8E-206 T 11-11-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 Gene3D G3DSA:3.30.310.50 370 443 1.5E-15 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 97 106 - T 11-11-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 SUPERFAMILY SSF53738 4 182 4.71E-48 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 SUPERFAMILY SSF53738 157 257 5.49E-29 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 SUPERFAMILY SSF53738 259 366 2.28E-28 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 5 136 7.7E-45 T 11-11-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 235 250 6.7E-13 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 96 110 6.7E-13 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 175 194 6.7E-13 T 11-11-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 442 1.8E-13 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 SUPERFAMILY SSF55957 358 445 4.97E-22 T 11-11-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 Gene3D G3DSA:3.40.120.10 177 251 2.8E-25 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS12000 a4ddde2e7232ef0e7855ef5ab0619ff5 446 Gene3D G3DSA:3.40.120.10 5 152 2.5E-47 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS11930 8bf29306d33004e750ea943a98e73f4a 135 Gene3D G3DSA:1.10.10.10 8 134 5.1E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11930 8bf29306d33004e750ea943a98e73f4a 135 SUPERFAMILY SSF46785 11 133 9.82E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11930 8bf29306d33004e750ea943a98e73f4a 135 Pfam PF01047 MarR family 30 87 6.0E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS11930 8bf29306d33004e750ea943a98e73f4a 135 SMART SM00347 22 123 2.6E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS11930 8bf29306d33004e750ea943a98e73f4a 135 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 5.9E-10 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS11930 8bf29306d33004e750ea943a98e73f4a 135 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 133 5.9E-10 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS11930 8bf29306d33004e750ea943a98e73f4a 135 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 79 5.9E-10 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS11930 8bf29306d33004e750ea943a98e73f4a 135 PRINTS PR00598 Bacterial regulatory protein MarR family signature 47 63 5.9E-10 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS04600 2031584ad5383cb7f2bd7a7d2fa55baa 295 PIRSF PIRSF003092 7 288 6.1E-86 T 11-11-2016 IPR025501 ATP binding protein MinD vm_RS04600 2031584ad5383cb7f2bd7a7d2fa55baa 295 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 25 211 7.2E-25 T 11-11-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain vm_RS04600 2031584ad5383cb7f2bd7a7d2fa55baa 295 SUPERFAMILY SSF52540 22 282 1.17E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04600 2031584ad5383cb7f2bd7a7d2fa55baa 295 Gene3D G3DSA:3.40.50.300 21 261 1.6E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09220 533a75e3b7cbf701c8f8d5ca9a395ccd 371 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 11 368 40.34 T 11-11-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 vm_RS09220 533a75e3b7cbf701c8f8d5ca9a395ccd 371 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 11 367 2.2E-151 T 11-11-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 Reactome: R-HSA-6787450 vm_RS09220 533a75e3b7cbf701c8f8d5ca9a395ccd 371 Gene3D G3DSA:3.40.50.620 6 218 3.8E-99 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS09220 533a75e3b7cbf701c8f8d5ca9a395ccd 371 Gene3D G3DSA:2.30.30.280 220 287 9.7E-33 T 11-11-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 Reactome: R-HSA-6787450 vm_RS09220 533a75e3b7cbf701c8f8d5ca9a395ccd 371 SUPERFAMILY SSF52402 9 251 2.21E-58 T 11-11-2016 vm_RS09220 533a75e3b7cbf701c8f8d5ca9a395ccd 371 Pfam PF03054 tRNA methyl transferase 11 367 4.3E-142 T 11-11-2016 vm_RS09220 533a75e3b7cbf701c8f8d5ca9a395ccd 371 Gene3D G3DSA:2.40.30.10 289 370 4.8E-32 T 11-11-2016 vm_RS13375 8dff21dc7a61458ac407e3ead2f63204 613 SUPERFAMILY SSF56349 259 427 7.36E-7 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS13375 8dff21dc7a61458ac407e3ead2f63204 613 Gene3D G3DSA:1.10.443.10 260 428 2.4E-7 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS03560 aa1801b4c80c072b85f41a41e3a8b2a8 217 Pfam PF00677 Lumazine binding domain 3 87 3.7E-20 T 11-11-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS03560 aa1801b4c80c072b85f41a41e3a8b2a8 217 Pfam PF00677 Lumazine binding domain 100 184 6.3E-21 T 11-11-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS03560 aa1801b4c80c072b85f41a41e3a8b2a8 217 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 201 2.8E-66 T 11-11-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS03560 aa1801b4c80c072b85f41a41e3a8b2a8 217 SUPERFAMILY SSF63380 93 196 8.25E-33 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 vm_RS03560 aa1801b4c80c072b85f41a41e3a8b2a8 217 SUPERFAMILY SSF63380 1 89 6.8E-25 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 vm_RS03560 aa1801b4c80c072b85f41a41e3a8b2a8 217 PIRSF PIRSF000498 1 211 1.4E-80 T 11-11-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS03560 aa1801b4c80c072b85f41a41e3a8b2a8 217 Gene3D G3DSA:2.40.30.20 105 195 9.7E-32 T 11-11-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 vm_RS03560 aa1801b4c80c072b85f41a41e3a8b2a8 217 Gene3D G3DSA:2.40.30.20 5 104 5.5E-31 T 11-11-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219|Reactome: R-HSA-1268020|Reactome: R-HSA-163210 vm_RS10140 fbe7a47fac4e2a45c9ec156be1533dcc 421 Gene3D G3DSA:3.90.190.20 289 418 8.0E-44 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS10140 fbe7a47fac4e2a45c9ec156be1533dcc 421 TIGRFAM TIGR01499 folC: bifunctional protein FolC 32 415 3.0E-109 T 11-11-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 vm_RS10140 fbe7a47fac4e2a45c9ec156be1533dcc 421 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 52 75 - T 11-11-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 vm_RS10140 fbe7a47fac4e2a45c9ec156be1533dcc 421 Pfam PF08245 Mur ligase middle domain 54 196 6.6E-8 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS10140 fbe7a47fac4e2a45c9ec156be1533dcc 421 SUPERFAMILY SSF53623 15 286 5.76E-88 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS10140 fbe7a47fac4e2a45c9ec156be1533dcc 421 Pfam PF02875 Mur ligase family, glutamate ligase domain 288 345 1.0E-8 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS10140 fbe7a47fac4e2a45c9ec156be1533dcc 421 PIRSF PIRSF001563 7 420 2.7E-108 T 11-11-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 vm_RS10140 fbe7a47fac4e2a45c9ec156be1533dcc 421 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 144 159 - T 11-11-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 vm_RS10140 fbe7a47fac4e2a45c9ec156be1533dcc 421 Gene3D G3DSA:3.40.1190.10 13 287 6.9E-89 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS10140 fbe7a47fac4e2a45c9ec156be1533dcc 421 SUPERFAMILY SSF53244 289 418 7.33E-32 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS12225 07907410f77b8002c9bec154c8369dab 293 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 23 67 5.2E-10 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 vm_RS12225 07907410f77b8002c9bec154c8369dab 293 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 281 7.5E-107 T 11-11-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 vm_RS12225 07907410f77b8002c9bec154c8369dab 293 Gene3D G3DSA:3.40.50.620 1 175 1.8E-79 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS12225 07907410f77b8002c9bec154c8369dab 293 Pfam PF02569 Pantoate-beta-alanine ligase 2 278 3.3E-100 T 11-11-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 vm_RS12225 07907410f77b8002c9bec154c8369dab 293 SUPERFAMILY SSF52374 1 281 1.39E-107 T 11-11-2016 vm_RS12225 07907410f77b8002c9bec154c8369dab 293 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 39.843 T 11-11-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 vm_RS12225 07907410f77b8002c9bec154c8369dab 293 Gene3D G3DSA:3.30.1300.10 177 288 3.9E-27 T 11-11-2016 vm_RS09470 fefeb15bf9dbc212f6aa401ed794f371 181 SUPERFAMILY SSF49777 24 179 1.1E-49 T 11-11-2016 IPR008914 Phosphatidylethanolamine-binding protein vm_RS09470 fefeb15bf9dbc212f6aa401ed794f371 181 Gene3D G3DSA:3.90.280.10 25 179 1.1E-53 T 11-11-2016 IPR008914 Phosphatidylethanolamine-binding protein vm_RS09470 fefeb15bf9dbc212f6aa401ed794f371 181 Pfam PF01161 Phosphatidylethanolamine-binding protein 47 178 2.8E-36 T 11-11-2016 IPR008914 Phosphatidylethanolamine-binding protein vm_RS09470 fefeb15bf9dbc212f6aa401ed794f371 181 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 43 178 1.2E-37 T 11-11-2016 IPR005247 YbhB/YbcL vm_RS02820 1bed2cf5050f5c00116d05ba9bf3839a 195 Gene3D G3DSA:3.40.50.1820 6 191 3.2E-19 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS02820 1bed2cf5050f5c00116d05ba9bf3839a 195 Pfam PF05728 Uncharacterised protein family (UPF0227) 8 193 4.7E-77 T 11-11-2016 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA vm_RS02820 1bed2cf5050f5c00116d05ba9bf3839a 195 SUPERFAMILY SSF53474 7 193 1.74E-18 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS11905 a9860ecde3c04b4fdca3dc739f6cc25a 175 Gene3D G3DSA:3.30.1050.10 59 136 3.7E-11 T 11-11-2016 IPR003033 SCP2 sterol-binding domain vm_RS11905 a9860ecde3c04b4fdca3dc739f6cc25a 175 Pfam PF02036 SCP-2 sterol transfer family 45 134 1.4E-18 T 11-11-2016 IPR003033 SCP2 sterol-binding domain vm_RS11905 a9860ecde3c04b4fdca3dc739f6cc25a 175 SUPERFAMILY SSF55718 42 139 2.59E-20 T 11-11-2016 IPR003033 SCP2 sterol-binding domain vm_RS11905 a9860ecde3c04b4fdca3dc739f6cc25a 175 PIRSF PIRSF025550 1 174 5.6E-85 T 11-11-2016 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT vm_RS06380 86d30b0b9b2fa333b5e85db2060bd6ef 147 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 7.5E-15 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS06380 86d30b0b9b2fa333b5e85db2060bd6ef 147 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 7.5E-15 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS06380 86d30b0b9b2fa333b5e85db2060bd6ef 147 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 7.5E-15 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS06380 86d30b0b9b2fa333b5e85db2060bd6ef 147 Gene3D G3DSA:3.30.70.920 54 138 2.2E-22 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain vm_RS06380 86d30b0b9b2fa333b5e85db2060bd6ef 147 Gene3D G3DSA:1.10.10.10 2 53 7.3E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS06380 86d30b0b9b2fa333b5e85db2060bd6ef 147 SUPERFAMILY SSF46785 1 59 8.65E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS06380 86d30b0b9b2fa333b5e85db2060bd6ef 147 SUPERFAMILY SSF54909 63 146 3.89E-14 T 11-11-2016 IPR011008 Dimeric alpha-beta barrel vm_RS06380 86d30b0b9b2fa333b5e85db2060bd6ef 147 SMART SM00344 1 110 4.4E-31 T 11-11-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 vm_RS06380 86d30b0b9b2fa333b5e85db2060bd6ef 147 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 48 1.8E-16 T 11-11-2016 vm_RS06380 86d30b0b9b2fa333b5e85db2060bd6ef 147 Pfam PF01037 Lrp/AsnC ligand binding domain 68 140 1.5E-14 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 3 577 5.5E-198 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 Gene3D G3DSA:1.10.730.10 455 577 4.0E-38 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 122 133 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 Pfam PF00750 tRNA synthetases class I (R) 98 447 3.0E-161 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 Pfam PF05746 DALR anticodon binding domain 461 577 6.1E-36 T 11-11-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 SUPERFAMILY SSF47323 455 577 7.85E-36 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 SMART SM01016 5 87 1.4E-27 T 11-11-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 Gene3D G3DSA:3.40.50.620 110 454 3.5E-115 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 SUPERFAMILY SSF52374 111 454 5.32E-97 T 11-11-2016 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 114 129 3.6E-25 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 129 145 3.6E-25 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 153 166 3.6E-25 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 PRINTS PR01038 Arginyl-tRNA synthetase signature 304 325 3.6E-25 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 Hamap MF_00123 Arginine--tRNA ligase [argS]. 5 577 28.147 T 11-11-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 SUPERFAMILY SSF55190 2 99 5.1E-21 T 11-11-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 Gene3D G3DSA:3.30.1360.70 2 105 2.4E-33 T 11-11-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 SMART SM00836 461 577 1.7E-40 T 11-11-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 vm_RS04570 9c06e0a53c83a738363efa90e2483894 577 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 7 87 2.6E-19 T 11-11-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 vm_RS12885 e2dd7885ce56272b9e973ef57795d8a3 285 SUPERFAMILY SSF56672 27 276 2.67E-32 T 11-11-2016 vm_RS12885 e2dd7885ce56272b9e973ef57795d8a3 285 SMART SM00482 69 245 8.2E-9 T 11-11-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS12885 e2dd7885ce56272b9e973ef57795d8a3 285 Gene3D G3DSA:3.30.70.370 187 268 9.0E-8 T 11-11-2016 vm_RS12885 e2dd7885ce56272b9e973ef57795d8a3 285 Gene3D G3DSA:3.30.70.370 45 92 9.0E-8 T 11-11-2016 vm_RS12885 e2dd7885ce56272b9e973ef57795d8a3 285 Pfam PF00476 DNA polymerase family A 45 277 4.7E-21 T 11-11-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS12885 e2dd7885ce56272b9e973ef57795d8a3 285 Gene3D G3DSA:1.10.150.20 93 186 2.6E-10 T 11-11-2016 vm_RS00495 fbe514050a869114b43190d68bd8c597 144 SUPERFAMILY SSF55729 8 126 1.2E-18 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS00495 fbe514050a869114b43190d68bd8c597 144 Gene3D G3DSA:3.40.630.30 8 127 2.3E-19 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS00495 fbe514050a869114b43190d68bd8c597 144 Pfam PF00583 Acetyltransferase (GNAT) family 44 106 7.0E-7 T 11-11-2016 IPR000182 GNAT domain GO:0008080 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 Gene3D G3DSA:1.20.1640.10 284 499 2.6E-49 T 11-11-2016 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 Gene3D G3DSA:3.30.70.1430 41 135 6.3E-24 T 11-11-2016 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 SUPERFAMILY SSF82714 707 788 7.72E-6 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 SUPERFAMILY SSF82693 41 132 4.19E-22 T 11-11-2016 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 Gene3D G3DSA:3.30.2090.10 707 787 1.8E-6 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 SUPERFAMILY SSF82714 184 264 1.44E-11 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 8.1E-28 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 8.1E-28 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 PRINTS PR00702 Acriflavin resistance protein family signature 11 35 8.1E-28 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 PRINTS PR00702 Acriflavin resistance protein family signature 39 57 8.1E-28 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 8.1E-28 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 8.1E-28 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 SUPERFAMILY SSF82866 788 1025 5.89E-49 T 11-11-2016 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 Pfam PF00873 AcrB/AcrD/AcrF family 6 1021 2.5E-170 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 Gene3D G3DSA:3.30.2090.10 185 264 2.9E-10 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 Gene3D G3DSA:1.10.3850.10 795 1022 4.4E-56 T 11-11-2016 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 SUPERFAMILY SSF82866 289 491 8.76E-39 T 11-11-2016 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 SUPERFAMILY SSF82693 148 181 6.45E-13 T 11-11-2016 vm_RS12050 106ba80b1c53fd110b06661ebe1e711b 1036 SUPERFAMILY SSF82693 267 325 6.45E-13 T 11-11-2016 vm_RS09605 0e81c59689b22b796d4dc2bf8aa9f5b0 598 Pfam PF06276 Ferric iron reductase FhuF-like transporter 413 574 1.3E-28 T 11-11-2016 IPR022770 Ferric iron reductase FhuF domain vm_RS09605 0e81c59689b22b796d4dc2bf8aa9f5b0 598 Pfam PF04183 IucA / IucC family 148 383 2.5E-56 T 11-11-2016 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 vm_RS10650 a671bf5ffd4d4745b618003e4517d7cc 452 Gene3D G3DSA:3.40.50.450 123 450 1.8E-125 T 11-11-2016 vm_RS10650 a671bf5ffd4d4745b618003e4517d7cc 452 Pfam PF14793 Domain of unknown function (DUF4478) 4 109 4.2E-51 T 11-11-2016 IPR027820 Domain of unknown function DUF4478 vm_RS10650 a671bf5ffd4d4745b618003e4517d7cc 452 Pfam PF03641 Possible lysine decarboxylase 187 326 1.7E-37 T 11-11-2016 IPR031100 LOG family vm_RS10650 a671bf5ffd4d4745b618003e4517d7cc 452 Gene3D G3DSA:3.30.1850.10 1 113 4.7E-57 T 11-11-2016 IPR027820 Domain of unknown function DUF4478 vm_RS10650 a671bf5ffd4d4745b618003e4517d7cc 452 Pfam PF11892 Domain of unknown function (DUF3412) 330 451 2.2E-57 T 11-11-2016 IPR021826 Protein of unknown function DUF3412 vm_RS10650 a671bf5ffd4d4745b618003e4517d7cc 452 SUPERFAMILY SSF102405 119 326 2.14E-41 T 11-11-2016 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 Gene3D G3DSA:3.30.420.40 1 159 1.5E-49 T 11-11-2016 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 5.8E-52 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 263 272 5.8E-52 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 5.8E-52 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 5.8E-52 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 5.8E-52 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 5.8E-52 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 SUPERFAMILY SSF53067 101 309 2.78E-44 T 11-11-2016 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 5 306 2.1E-126 T 11-11-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 ProSitePatterns PS01016 Glycoprotease family signature. 96 116 - T 11-11-2016 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618|Reactome: R-HSA-6782315 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 331 64.033 T 11-11-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 Pfam PF00814 Glycoprotease family 24 307 7.0E-105 T 11-11-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 SUPERFAMILY SSF53067 3 123 3.32E-31 T 11-11-2016 vm_RS12590 ec0849d15e5fb3eeae3beda96a90ca41 339 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 313 2.3E-136 T 11-11-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 vm_RS00870 30b92a1f791a6983edc4a09048312075 291 Hamap MF_00117 33 kDa chaperonin [hslO]. 3 283 32.678 T 11-11-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 vm_RS00870 30b92a1f791a6983edc4a09048312075 291 SUPERFAMILY SSF118352 223 281 2.88E-18 T 11-11-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 vm_RS00870 30b92a1f791a6983edc4a09048312075 291 SUPERFAMILY SSF64397 3 231 7.98E-76 T 11-11-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 vm_RS00870 30b92a1f791a6983edc4a09048312075 291 Gene3D G3DSA:3.55.30.10 2 175 4.9E-64 T 11-11-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 vm_RS00870 30b92a1f791a6983edc4a09048312075 291 Gene3D G3DSA:3.90.1280.10 225 281 2.1E-22 T 11-11-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 vm_RS00870 30b92a1f791a6983edc4a09048312075 291 PIRSF PIRSF005261 1 283 3.1E-69 T 11-11-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 vm_RS00870 30b92a1f791a6983edc4a09048312075 291 Pfam PF01430 Hsp33 protein 6 272 1.5E-80 T 11-11-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 vm_RS00870 30b92a1f791a6983edc4a09048312075 291 Gene3D G3DSA:1.10.287.480 176 224 3.0E-25 T 11-11-2016 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain vm_RS05410 946d0616da4571dc9321e73baa6b28c5 242 SUPERFAMILY SSF51161 108 234 7.07E-30 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS05410 946d0616da4571dc9321e73baa6b28c5 242 Gene3D G3DSA:2.160.10.10 94 235 5.3E-35 T 11-11-2016 vm_RS05410 946d0616da4571dc9321e73baa6b28c5 242 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 184 216 1.3E-6 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS05410 946d0616da4571dc9321e73baa6b28c5 242 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 190 218 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 Pfam PF01170 Putative RNA methylase family UPF0020 162 374 7.5E-61 T 11-11-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 PIRSF PIRSF037618 1 707 1.7E-298 T 11-11-2016 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 SUPERFAMILY SSF53335 399 705 1.72E-69 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 SUPERFAMILY SSF53335 258 371 4.84E-39 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 SUPERFAMILY SSF53335 139 217 4.84E-39 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 Gene3D G3DSA:3.40.50.150 436 705 2.0E-77 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 SMART SM00981 56 154 1.0E-11 T 11-11-2016 IPR004114 THUMP domain GO:0003723 vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 4 706 31.397 T 11-11-2016 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 ProSitePatterns PS01261 Uncharacterized protein family UPF0020 signature. 195 206 - T 11-11-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 Gene3D G3DSA:3.40.50.150 255 334 1.1E-26 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 Gene3D G3DSA:3.40.50.150 149 214 1.1E-26 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 Pfam PF02926 THUMP domain 31 153 3.0E-6 T 11-11-2016 IPR004114 THUMP domain GO:0003723 vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 305 311 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 vm_RS07490 3bca1c642830bd0f66261cb79c50d2b0 707 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 434 662 2.7E-27 T 11-11-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 vm_RS13095 acc28d1ff426e61fdb0e517157a88394 306 Pfam PF04960 Glutaminase 22 306 2.7E-114 T 11-11-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 vm_RS13095 acc28d1ff426e61fdb0e517157a88394 306 Gene3D G3DSA:3.40.710.10 2 306 1.9E-126 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS13095 acc28d1ff426e61fdb0e517157a88394 306 SUPERFAMILY SSF56601 4 306 2.49E-115 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS13095 acc28d1ff426e61fdb0e517157a88394 306 TIGRFAM TIGR03814 Gln_ase: glutaminase A 8 306 1.5E-131 T 11-11-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 vm_RS13095 acc28d1ff426e61fdb0e517157a88394 306 Hamap MF_00313 Glutaminase [glsA]. 4 306 47.304 T 11-11-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: R-HSA-210500|Reactome: R-HSA-5628897|Reactome: R-HSA-70614 vm_RS04855 1cb4de5595c2a7e288c0650e32642df4 307 PIRSF PIRSF000446 1 307 3.6E-135 T 11-11-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 vm_RS04855 1cb4de5595c2a7e288c0650e32642df4 307 SUPERFAMILY SSF55048 128 197 1.96E-17 T 11-11-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 vm_RS04855 1cb4de5595c2a7e288c0650e32642df4 307 SUPERFAMILY SSF52151 190 305 3.14E-82 T 11-11-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 vm_RS04855 1cb4de5595c2a7e288c0650e32642df4 307 SUPERFAMILY SSF52151 4 122 3.14E-82 T 11-11-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 vm_RS04855 1cb4de5595c2a7e288c0650e32642df4 307 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 3 291 1.5E-127 T 11-11-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 vm_RS04855 1cb4de5595c2a7e288c0650e32642df4 307 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 7 306 1.1E-46 T 11-11-2016 IPR020801 Polyketide synthase, acyl transferase domain vm_RS04855 1cb4de5595c2a7e288c0650e32642df4 307 Gene3D G3DSA:3.30.70.250 125 196 9.0E-32 T 11-11-2016 vm_RS04855 1cb4de5595c2a7e288c0650e32642df4 307 Pfam PF00698 Acyl transferase domain 7 296 5.9E-38 T 11-11-2016 IPR014043 Acyl transferase vm_RS04855 1cb4de5595c2a7e288c0650e32642df4 307 Gene3D G3DSA:3.40.366.10 197 299 1.0E-74 T 11-11-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 vm_RS04855 1cb4de5595c2a7e288c0650e32642df4 307 Gene3D G3DSA:3.40.366.10 2 122 1.0E-74 T 11-11-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 vm_RS05945 2f69e4bdf1b79dd128470bb403f750bf 621 Gene3D G3DSA:3.40.930.10 2 146 7.1E-45 T 11-11-2016 IPR002178 PTS EIIA type-2 domain vm_RS05945 2f69e4bdf1b79dd128470bb403f750bf 621 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 528 618 1.4E-14 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 vm_RS05945 2f69e4bdf1b79dd128470bb403f750bf 621 Pfam PF02378 Phosphotransferase system, EIIC 188 446 1.2E-12 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 vm_RS05945 2f69e4bdf1b79dd128470bb403f750bf 621 Gene3D G3DSA:3.40.50.2300 522 618 4.2E-34 T 11-11-2016 vm_RS05945 2f69e4bdf1b79dd128470bb403f750bf 621 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 528 610 2.2E-27 T 11-11-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 vm_RS05945 2f69e4bdf1b79dd128470bb403f750bf 621 SUPERFAMILY SSF55804 2 146 3.27E-36 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 vm_RS05945 2f69e4bdf1b79dd128470bb403f750bf 621 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 6 146 1.3E-32 T 11-11-2016 IPR002178 PTS EIIA type-2 domain vm_RS05945 2f69e4bdf1b79dd128470bb403f750bf 621 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 176 497 3.6E-78 T 11-11-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 vm_RS05945 2f69e4bdf1b79dd128470bb403f750bf 621 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 7 133 2.2E-36 T 11-11-2016 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 vm_RS05945 2f69e4bdf1b79dd128470bb403f750bf 621 SUPERFAMILY SSF52794 525 618 9.24E-28 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 vm_RS12250 e5e3899e59b7609a9ff0c56bd03a6757 177 Gene3D G3DSA:3.40.50.2020 2 173 7.4E-79 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS12250 e5e3899e59b7609a9ff0c56bd03a6757 177 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 7 172 3.9E-75 T 11-11-2016 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 vm_RS12250 e5e3899e59b7609a9ff0c56bd03a6757 177 Pfam PF00156 Phosphoribosyl transferase domain 12 159 5.4E-28 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 vm_RS12250 e5e3899e59b7609a9ff0c56bd03a6757 177 SUPERFAMILY SSF53271 3 174 2.23E-55 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 SMART SM01130 1 290 6.8E-135 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 Gene3D G3DSA:3.20.20.70 1 289 9.5E-113 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 288 64.094 T 11-11-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 1.0E-33 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 1.0E-33 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 103 119 1.0E-33 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 PRINTS PR00146 Dihydrodipicolinate synthase signature 71 89 1.0E-33 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 SUPERFAMILY SSF51569 2 288 9.0E-97 T 11-11-2016 vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 11-11-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 11-11-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 PIRSF PIRSF001365 1 290 1.7E-88 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 4 288 6.9E-116 T 11-11-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS04180 be35e90da6da17bdaffbd1f7dfca197d 292 Pfam PF00701 Dihydrodipicolinate synthetase family 2 288 1.4E-107 T 11-11-2016 IPR002220 DapA-like GO:0008152|GO:0016829 vm_RS02225 4db9610bd45c54d5fdee5468cbe1eb48 451 SUPERFAMILY SSF53623 96 306 2.75E-53 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02225 4db9610bd45c54d5fdee5468cbe1eb48 451 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 449 59.012 T 11-11-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 vm_RS02225 4db9610bd45c54d5fdee5468cbe1eb48 451 SUPERFAMILY SSF53244 311 448 1.13E-36 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02225 4db9610bd45c54d5fdee5468cbe1eb48 451 Gene3D G3DSA:3.40.1190.10 92 312 1.4E-87 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02225 4db9610bd45c54d5fdee5468cbe1eb48 451 Gene3D G3DSA:3.40.50.720 1 90 2.7E-41 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS02225 4db9610bd45c54d5fdee5468cbe1eb48 451 Pfam PF02875 Mur ligase family, glutamate ligase domain 311 361 3.5E-10 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02225 4db9610bd45c54d5fdee5468cbe1eb48 451 SUPERFAMILY SSF51984 1 89 5.89E-24 T 11-11-2016 vm_RS02225 4db9610bd45c54d5fdee5468cbe1eb48 451 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 3.2E-273 T 11-11-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 vm_RS02225 4db9610bd45c54d5fdee5468cbe1eb48 451 Pfam PF01225 Mur ligase family, catalytic domain 2 101 1.8E-20 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 vm_RS02225 4db9610bd45c54d5fdee5468cbe1eb48 451 Pfam PF08245 Mur ligase middle domain 108 291 2.9E-23 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02225 4db9610bd45c54d5fdee5468cbe1eb48 451 Gene3D G3DSA:3.90.190.20 313 449 9.0E-36 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 Pfam PF00183 Hsp90 protein 227 632 3.0E-129 T 11-11-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 188 4.0E-15 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 Gene3D G3DSA:3.30.565.10 10 245 5.2E-83 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 SUPERFAMILY SSF110942 520 632 3.92E-34 T 11-11-2016 vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 SUPERFAMILY SSF55874 10 218 2.36E-65 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 PIRSF PIRSF002583 1 635 1.3E-217 T 11-11-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 Hamap MF_00505 Chaperone protein HtpG [htpG]. 7 632 32.476 T 11-11-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 SMART SM00387 32 189 2.1E-9 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 PRINTS PR00775 90kDa heat shock protein signature 98 115 1.4E-63 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 PRINTS PR00775 90kDa heat shock protein signature 195 213 1.4E-63 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 PRINTS PR00775 90kDa heat shock protein signature 125 147 1.4E-63 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 PRINTS PR00775 90kDa heat shock protein signature 31 53 1.4E-63 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 PRINTS PR00775 90kDa heat shock protein signature 177 194 1.4E-63 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 PRINTS PR00775 90kDa heat shock protein signature 10 30 1.4E-63 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 PRINTS PR00775 90kDa heat shock protein signature 80 97 1.4E-63 T 11-11-2016 IPR020575 Heat shock protein Hsp90, N-terminal vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 30 39 - T 11-11-2016 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 vm_RS10210 cb1f488e11df7a1638d7019a345ee4f7 635 SUPERFAMILY SSF54211 238 493 9.86E-100 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS10680 9c065c5f7b7b5eca759f00abbb303e9c 319 Pfam PF00691 OmpA family 195 293 4.2E-18 T 11-11-2016 IPR006665 OmpA-like domain vm_RS10680 9c065c5f7b7b5eca759f00abbb303e9c 319 SUPERFAMILY SSF103088 183 299 5.1E-30 T 11-11-2016 IPR006665 OmpA-like domain vm_RS10680 9c065c5f7b7b5eca759f00abbb303e9c 319 Gene3D G3DSA:3.30.1330.60 171 299 4.0E-32 T 11-11-2016 IPR006665 OmpA-like domain vm_RS10680 9c065c5f7b7b5eca759f00abbb303e9c 319 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 8 57 9.6E-18 T 11-11-2016 IPR025713 Motility protein B, N-terminal domain vm_RS01690 15fc2e1454324c9bbcfaac44cc1da1d7 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 98 120 4.3E-39 T 11-11-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 vm_RS01690 15fc2e1454324c9bbcfaac44cc1da1d7 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 14 31 4.3E-39 T 11-11-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 vm_RS01690 15fc2e1454324c9bbcfaac44cc1da1d7 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 74 94 4.3E-39 T 11-11-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 vm_RS01690 15fc2e1454324c9bbcfaac44cc1da1d7 156 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 124 142 4.3E-39 T 11-11-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 vm_RS01690 15fc2e1454324c9bbcfaac44cc1da1d7 156 Pfam PF02556 Preprotein translocase subunit SecB 6 145 1.7E-55 T 11-11-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 vm_RS01690 15fc2e1454324c9bbcfaac44cc1da1d7 156 SUPERFAMILY SSF54611 4 142 2.03E-51 T 11-11-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 vm_RS01690 15fc2e1454324c9bbcfaac44cc1da1d7 156 Gene3D G3DSA:3.10.420.10 5 151 1.6E-60 T 11-11-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 vm_RS01690 15fc2e1454324c9bbcfaac44cc1da1d7 156 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 9 146 9.9E-59 T 11-11-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 vm_RS01690 15fc2e1454324c9bbcfaac44cc1da1d7 156 Hamap MF_00821 Protein-export protein SecB [secB]. 1 146 32.416 T 11-11-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 vm_RS07115 a67b7a46b24dae377ac999b96073a416 425 Pfam PF02687 FtsX-like permease family 294 418 1.7E-16 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 vm_RS07115 a67b7a46b24dae377ac999b96073a416 425 Pfam PF12704 MacB-like periplasmic core domain 20 239 3.2E-23 T 11-11-2016 IPR025857 MacB-like periplasmic core domain vm_RS00115 70e1d3c5f30a7757be19d3f8e4a229b0 313 Pfam PF01553 Acyltransferase 92 245 3.5E-15 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 vm_RS00115 70e1d3c5f30a7757be19d3f8e4a229b0 313 SMART SM00563 104 246 1.9E-24 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 vm_RS00115 70e1d3c5f30a7757be19d3f8e4a229b0 313 SUPERFAMILY SSF69593 32 248 1.57E-28 T 11-11-2016 vm_RS13105 b4fcf50dfcec64d9d26de0b4da441ecb 353 ProSitePatterns PS01155 Endonuclease III family signature. 100 129 - T 11-11-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 vm_RS13105 b4fcf50dfcec64d9d26de0b4da441ecb 353 SMART SM00478 37 188 6.0E-48 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 vm_RS13105 b4fcf50dfcec64d9d26de0b4da441ecb 353 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 167 6.1E-21 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 vm_RS13105 b4fcf50dfcec64d9d26de0b4da441ecb 353 Gene3D G3DSA:1.10.1670.10 121 222 2.7E-39 T 11-11-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 vm_RS13105 b4fcf50dfcec64d9d26de0b4da441ecb 353 Gene3D G3DSA:3.90.79.10 227 345 1.8E-22 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS13105 b4fcf50dfcec64d9d26de0b4da441ecb 353 SUPERFAMILY SSF55811 218 344 8.45E-27 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS13105 b4fcf50dfcec64d9d26de0b4da441ecb 353 Pfam PF14815 NUDIX domain 231 343 6.5E-23 T 11-11-2016 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 vm_RS13105 b4fcf50dfcec64d9d26de0b4da441ecb 353 SUPERFAMILY SSF48150 3 223 9.89E-77 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 vm_RS13105 b4fcf50dfcec64d9d26de0b4da441ecb 353 Gene3D G3DSA:1.10.340.30 20 120 1.5E-45 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 vm_RS13105 b4fcf50dfcec64d9d26de0b4da441ecb 353 SMART SM00525 189 209 1.8E-4 T 11-11-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 vm_RS13105 b4fcf50dfcec64d9d26de0b4da441ecb 353 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 4 266 3.5E-132 T 11-11-2016 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 vm_RS13105 b4fcf50dfcec64d9d26de0b4da441ecb 353 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 190 206 - T 11-11-2016 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 vm_RS10145 24657e3a84213c066e76d2d8ddbdeca2 308 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 163 181 1.6E-38 T 11-11-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS10145 24657e3a84213c066e76d2d8ddbdeca2 308 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 129 143 1.6E-38 T 11-11-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS10145 24657e3a84213c066e76d2d8ddbdeca2 308 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 200 217 1.6E-38 T 11-11-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS10145 24657e3a84213c066e76d2d8ddbdeca2 308 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 251 260 1.6E-38 T 11-11-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS10145 24657e3a84213c066e76d2d8ddbdeca2 308 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 229 240 1.6E-38 T 11-11-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS10145 24657e3a84213c066e76d2d8ddbdeca2 308 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 1 281 37.211 T 11-11-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS10145 24657e3a84213c066e76d2d8ddbdeca2 308 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 1 283 4.3E-138 T 11-11-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS10145 24657e3a84213c066e76d2d8ddbdeca2 308 Gene3D G3DSA:3.90.226.10 19 278 1.7E-71 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS10145 24657e3a84213c066e76d2d8ddbdeca2 308 SUPERFAMILY SSF52096 25 280 6.53E-85 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS10145 24657e3a84213c066e76d2d8ddbdeca2 308 Pfam PF01039 Carboxyl transferase domain 102 240 1.2E-12 T 11-11-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS09985 b32071af9dbf7c1f90f6daf8adf77183 298 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 9 283 2.2E-105 T 11-11-2016 IPR010119 Gluconeogenesis factor vm_RS09985 b32071af9dbf7c1f90f6daf8adf77183 298 Gene3D G3DSA:3.40.50.10680 79 294 1.8E-54 T 11-11-2016 vm_RS09985 b32071af9dbf7c1f90f6daf8adf77183 298 SUPERFAMILY SSF142338 6 290 5.36E-84 T 11-11-2016 vm_RS09985 b32071af9dbf7c1f90f6daf8adf77183 298 Hamap MF_00973 Gluconeogenesis factor. 5 296 31.195 T 11-11-2016 IPR010119 Gluconeogenesis factor vm_RS09985 b32071af9dbf7c1f90f6daf8adf77183 298 Pfam PF01933 Uncharacterised protein family UPF0052 9 283 9.5E-75 T 11-11-2016 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 vm_RS01000 f8cfde2a96fdf0a1e7c07812010f3023 418 Pfam PF13438 Domain of unknown function (DUF4113) 367 416 5.2E-23 T 11-11-2016 IPR025188 Domain of unknown function DUF4113 vm_RS01000 f8cfde2a96fdf0a1e7c07812010f3023 418 Pfam PF11798 IMS family HHH motif 172 200 9.9E-6 T 11-11-2016 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 vm_RS01000 f8cfde2a96fdf0a1e7c07812010f3023 418 Pfam PF00817 impB/mucB/samB family 5 151 1.9E-30 T 11-11-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 vm_RS01000 f8cfde2a96fdf0a1e7c07812010f3023 418 SUPERFAMILY SSF56672 1 235 2.76E-65 T 11-11-2016 vm_RS01000 f8cfde2a96fdf0a1e7c07812010f3023 418 Gene3D G3DSA:3.30.70.270 67 156 1.6E-17 T 11-11-2016 vm_RS01000 f8cfde2a96fdf0a1e7c07812010f3023 418 Gene3D G3DSA:1.10.150.20 171 235 8.9E-18 T 11-11-2016 vm_RS09055 1add7ea08953fd5dd391a98f9ef4b8b8 364 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 8 363 5.8E-162 T 11-11-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 vm_RS09055 1add7ea08953fd5dd391a98f9ef4b8b8 364 Gene3D G3DSA:3.90.1150.10 262 362 9.2E-44 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS09055 1add7ea08953fd5dd391a98f9ef4b8b8 364 Gene3D G3DSA:3.40.640.10 21 261 1.7E-101 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS09055 1add7ea08953fd5dd391a98f9ef4b8b8 364 SUPERFAMILY SSF53383 7 360 1.32E-112 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS09055 1add7ea08953fd5dd391a98f9ef4b8b8 364 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 6 363 51.787 T 11-11-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 vm_RS09055 1add7ea08953fd5dd391a98f9ef4b8b8 364 PIRSF PIRSF000525 2 364 6.3E-153 T 11-11-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|Reactome: R-HSA-977347 vm_RS09055 1add7ea08953fd5dd391a98f9ef4b8b8 364 Pfam PF00266 Aminotransferase class-V 8 352 5.5E-62 T 11-11-2016 IPR000192 Aminotransferase class V domain vm_RS11480 aa6343d0f98e1b915be154300a0a264f 352 Pfam PF02547 Queuosine biosynthesis protein 3 345 2.3E-133 T 11-11-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 vm_RS11480 aa6343d0f98e1b915be154300a0a264f 352 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 345 3.1E-159 T 11-11-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 vm_RS11480 aa6343d0f98e1b915be154300a0a264f 352 Gene3D G3DSA:2.40.10.240 64 142 1.7E-17 T 11-11-2016 vm_RS11480 aa6343d0f98e1b915be154300a0a264f 352 Gene3D G3DSA:3.40.1780.10 179 345 3.1E-101 T 11-11-2016 vm_RS11480 aa6343d0f98e1b915be154300a0a264f 352 Gene3D G3DSA:3.40.1780.10 1 62 3.1E-101 T 11-11-2016 vm_RS11480 aa6343d0f98e1b915be154300a0a264f 352 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 346 47.258 T 11-11-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 vm_RS11480 aa6343d0f98e1b915be154300a0a264f 352 SUPERFAMILY SSF111337 1 345 1.26E-139 T 11-11-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 vm_RS05840 44ef971f24427b03d2603c06cc915403 334 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 255 332 9.0E-39 T 11-11-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 vm_RS05840 44ef971f24427b03d2603c06cc915403 334 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 28 331 5.6E-148 T 11-11-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 vm_RS05840 44ef971f24427b03d2603c06cc915403 334 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 15 240 4.5E-118 T 11-11-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 vm_RS05840 44ef971f24427b03d2603c06cc915403 334 Gene3D G3DSA:1.10.10.10 262 333 2.9E-35 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05840 44ef971f24427b03d2603c06cc915403 334 SUPERFAMILY SSF46785 262 333 1.6E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05840 44ef971f24427b03d2603c06cc915403 334 SUPERFAMILY SSF52540 25 256 2.21E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05840 44ef971f24427b03d2603c06cc915403 334 Gene3D G3DSA:1.10.8.60 188 260 1.3E-33 T 11-11-2016 vm_RS05840 44ef971f24427b03d2603c06cc915403 334 Gene3D G3DSA:3.40.50.300 25 182 2.8E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05840 44ef971f24427b03d2603c06cc915403 334 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 334 183.173 T 11-11-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 vm_RS05840 44ef971f24427b03d2603c06cc915403 334 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 258 331 3.0E-33 T 11-11-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 vm_RS05840 44ef971f24427b03d2603c06cc915403 334 SMART SM00382 56 187 1.5E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS05570 7d7ef6299666d1f469a914d0615358ac 383 Gene3D G3DSA:3.40.50.10770 1 140 3.7E-63 T 11-11-2016 vm_RS05570 7d7ef6299666d1f469a914d0615358ac 383 Gene3D G3DSA:3.40.1350.10 241 382 2.8E-59 T 11-11-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 vm_RS05570 7d7ef6299666d1f469a914d0615358ac 383 Pfam PF09002 Domain of unknown function (DUF1887) 1 379 2.4E-162 T 11-11-2016 IPR015093 Protein of unknown function DUF1887 vm_RS05570 7d7ef6299666d1f469a914d0615358ac 383 Gene3D G3DSA:1.10.10.680 162 240 2.1E-51 T 11-11-2016 vm_RS05570 7d7ef6299666d1f469a914d0615358ac 383 SUPERFAMILY SSF52980 1 382 1.03E-119 T 11-11-2016 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 vm_RS11825 2d38a31883db4dee35c39777cecbf5a5 172 Gene3D G3DSA:3.90.79.10 5 151 5.2E-32 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS11825 2d38a31883db4dee35c39777cecbf5a5 172 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 vm_RS11825 2d38a31883db4dee35c39777cecbf5a5 172 PRINTS PR00502 NUDIX hydrolase family signature 47 62 7.1E-8 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 vm_RS11825 2d38a31883db4dee35c39777cecbf5a5 172 PRINTS PR00502 NUDIX hydrolase family signature 33 47 7.1E-8 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 vm_RS11825 2d38a31883db4dee35c39777cecbf5a5 172 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.359 T 11-11-2016 IPR022927 RNA pyrophosphohydrolase RppH vm_RS11825 2d38a31883db4dee35c39777cecbf5a5 172 Pfam PF00293 NUDIX domain 7 145 6.9E-27 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 vm_RS11825 2d38a31883db4dee35c39777cecbf5a5 172 SUPERFAMILY SSF55811 6 152 7.72E-32 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS02095 825c5e0fc9fbdeebf46227e4b154e399 206 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 117 203 1.1E-25 T 11-11-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 vm_RS02095 825c5e0fc9fbdeebf46227e4b154e399 206 Gene3D G3DSA:3.10.50.40 93 205 1.0E-42 T 11-11-2016 vm_RS02095 825c5e0fc9fbdeebf46227e4b154e399 206 SUPERFAMILY SSF54534 7 205 7.27E-55 T 11-11-2016 vm_RS02095 825c5e0fc9fbdeebf46227e4b154e399 206 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 2 108 3.7E-24 T 11-11-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 vm_RS02095 825c5e0fc9fbdeebf46227e4b154e399 206 Gene3D G3DSA:1.10.287.460 2 92 7.2E-25 T 11-11-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 Gene3D G3DSA:2.40.50.100 1 92 1.0E-21 T 11-11-2016 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 Gene3D G3DSA:2.40.50.100 203 295 1.4E-21 T 11-11-2016 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 226 255 - T 11-11-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 Gene3D G3DSA:3.30.559.10 387 628 8.3E-84 T 11-11-2016 IPR023213 Chloramphenicol acetyltransferase-like domain Reactome: R-HSA-389661 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 SUPERFAMILY SSF51230 103 194 2.22E-22 T 11-11-2016 IPR011053 Single hybrid motif vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 Pfam PF00364 Biotin-requiring enzyme 104 174 8.0E-21 T 11-11-2016 IPR000089 Biotin/lipoyl attachment vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 Pfam PF00364 Biotin-requiring enzyme 4 73 5.2E-20 T 11-11-2016 IPR000089 Biotin/lipoyl attachment vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 Pfam PF00364 Biotin-requiring enzyme 204 274 1.0E-20 T 11-11-2016 IPR000089 Biotin/lipoyl attachment vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 Gene3D G3DSA:2.40.50.100 105 179 3.3E-21 T 11-11-2016 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 SUPERFAMILY SSF52777 386 627 6.23E-83 T 11-11-2016 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 11-11-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 SUPERFAMILY SSF51230 202 295 3.14E-23 T 11-11-2016 IPR011053 Single hybrid motif vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 126 155 - T 11-11-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 189 628 6.7E-206 T 11-11-2016 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 397 627 3.5E-81 T 11-11-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 Gene3D G3DSA:4.10.320.10 316 361 1.5E-20 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 SUPERFAMILY SSF47005 314 359 1.44E-12 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 SUPERFAMILY SSF51230 1 92 5.5E-23 T 11-11-2016 IPR011053 Single hybrid motif vm_RS02920 7ff18c9219a47d65b39127f077ecc683 628 Pfam PF02817 e3 binding domain 321 355 6.2E-15 T 11-11-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 Reactome: R-HSA-389661 vm_RS09885 7c91ff46910e8c14d731acf9bc462731 187 Pfam PF08281 Sigma-70, region 4 119 171 9.8E-11 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS09885 7c91ff46910e8c14d731acf9bc462731 187 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 175 2.0E-20 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS09885 7c91ff46910e8c14d731acf9bc462731 187 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 51 82 - T 11-11-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS09885 7c91ff46910e8c14d731acf9bc462731 187 Gene3D G3DSA:1.10.1740.10 23 116 7.9E-21 T 11-11-2016 vm_RS09885 7c91ff46910e8c14d731acf9bc462731 187 SUPERFAMILY SSF88659 116 176 2.99E-12 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS09885 7c91ff46910e8c14d731acf9bc462731 187 Gene3D G3DSA:1.10.10.10 117 176 9.9E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09885 7c91ff46910e8c14d731acf9bc462731 187 SUPERFAMILY SSF88946 23 104 3.92E-19 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS09885 7c91ff46910e8c14d731acf9bc462731 187 Pfam PF04542 Sigma-70 region 2 29 95 1.3E-15 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS14390 052b2b20330b352f2af894aed99d19dd 345 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 340 3.9E-147 T 11-11-2016 IPR011910 Lipopolysaccharide heptosyltransferase II GO:0009103|GO:0016757 vm_RS14390 052b2b20330b352f2af894aed99d19dd 345 Gene3D G3DSA:3.40.50.2000 168 342 1.4E-56 T 11-11-2016 vm_RS14390 052b2b20330b352f2af894aed99d19dd 345 SUPERFAMILY SSF53756 1 343 9.89E-102 T 11-11-2016 vm_RS14390 052b2b20330b352f2af894aed99d19dd 345 Gene3D G3DSA:3.40.50.2000 1 140 5.8E-55 T 11-11-2016 vm_RS14390 052b2b20330b352f2af894aed99d19dd 345 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 70 321 2.6E-68 T 11-11-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 vm_RS13855 e1103ec28d01489e0a1a52dde7896a0d 369 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 10 343 1.6E-152 T 11-11-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 vm_RS13855 e1103ec28d01489e0a1a52dde7896a0d 369 Pfam PF13484 4Fe-4S double cluster binding domain 189 252 5.0E-20 T 11-11-2016 vm_RS13855 e1103ec28d01489e0a1a52dde7896a0d 369 Pfam PF08331 Domain of unknown function (DUF1730) 58 136 1.3E-23 T 11-11-2016 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700 vm_RS13855 e1103ec28d01489e0a1a52dde7896a0d 369 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 189 200 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS13855 e1103ec28d01489e0a1a52dde7896a0d 369 SUPERFAMILY SSF54862 165 281 2.13E-19 T 11-11-2016 vm_RS13855 e1103ec28d01489e0a1a52dde7896a0d 369 Gene3D G3DSA:3.30.70.20 186 256 2.5E-8 T 11-11-2016 vm_RS13855 e1103ec28d01489e0a1a52dde7896a0d 369 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 3 311 51.356 T 11-11-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700 vm_RS04765 063948f97a11047c5bb91856d0180cf6 71 SUPERFAMILY SSF158651 1 70 1.26E-28 T 11-11-2016 vm_RS04765 063948f97a11047c5bb91856d0180cf6 71 PIRSF PIRSF006188 1 71 5.1E-37 T 11-11-2016 IPR009857 Uncharacterised protein family UPF0352 vm_RS04765 063948f97a11047c5bb91856d0180cf6 71 ProDom PD027794 UPF0352 YEJL NTHI1007 CPS_2611 VF1649 VV1166 HD1515 VP2129 YPO1261/Y2923/YP0880 ECA2748 1 69 1.0E-32 T 11-11-2016 IPR009857 Uncharacterised protein family UPF0352 vm_RS04765 063948f97a11047c5bb91856d0180cf6 71 Pfam PF07208 Protein of unknown function (DUF1414) 26 69 4.6E-21 T 11-11-2016 IPR009857 Uncharacterised protein family UPF0352 vm_RS04765 063948f97a11047c5bb91856d0180cf6 71 Hamap MF_00816 UPF0352 protein YejL [yejL]. 1 71 23.21 T 11-11-2016 IPR009857 Uncharacterised protein family UPF0352 vm_RS04765 063948f97a11047c5bb91856d0180cf6 71 Gene3D G3DSA:1.10.3390.10 1 70 2.6E-33 T 11-11-2016 IPR023202 YejL-like domain vm_RS04695 11348616b0780a10db8716d04c4b0489 248 Pfam PF04333 MlaA lipoprotein 31 223 1.1E-63 T 11-11-2016 IPR007428 MlaA lipoprotein GO:0016020 vm_RS04695 11348616b0780a10db8716d04c4b0489 248 PRINTS PR01805 VacJ lipoprotein signature 102 119 1.4E-28 T 11-11-2016 IPR007428 MlaA lipoprotein GO:0016020 vm_RS04695 11348616b0780a10db8716d04c4b0489 248 PRINTS PR01805 VacJ lipoprotein signature 51 67 1.4E-28 T 11-11-2016 IPR007428 MlaA lipoprotein GO:0016020 vm_RS04695 11348616b0780a10db8716d04c4b0489 248 PRINTS PR01805 VacJ lipoprotein signature 139 156 1.4E-28 T 11-11-2016 IPR007428 MlaA lipoprotein GO:0016020 vm_RS04695 11348616b0780a10db8716d04c4b0489 248 PRINTS PR01805 VacJ lipoprotein signature 33 46 1.4E-28 T 11-11-2016 IPR007428 MlaA lipoprotein GO:0016020 vm_RS14825 ec44c642affa0bad021ec655b588dc3b 140 SUPERFAMILY SSF51344 5 87 7.06E-24 T 11-11-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS14825 ec44c642affa0bad021ec655b588dc3b 140 Gene3D G3DSA:2.60.15.10 5 92 2.5E-29 T 11-11-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS14825 ec44c642affa0bad021ec655b588dc3b 140 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 11 91 2.0E-40 T 11-11-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS14825 ec44c642affa0bad021ec655b588dc3b 140 SUPERFAMILY SSF46604 89 138 3.66E-14 T 11-11-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210 vm_RS14825 ec44c642affa0bad021ec655b588dc3b 140 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 5 134 4.0E-42 T 11-11-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS14825 ec44c642affa0bad021ec655b588dc3b 140 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 85 5.2E-28 T 11-11-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS14825 ec44c642affa0bad021ec655b588dc3b 140 Gene3D G3DSA:1.20.5.440 93 135 1.9E-22 T 11-11-2016 vm_RS14825 ec44c642affa0bad021ec655b588dc3b 140 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 134 1.1E-11 T 11-11-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Reactome: R-HSA-163210 vm_RS14825 ec44c642affa0bad021ec655b588dc3b 140 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 4 132 20.433 T 11-11-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 SMART SM00433 34 622 4.7E-216 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 3 623 0.0 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 2 626 46.948 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 SUPERFAMILY SSF55874 5 215 1.33E-66 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 Gene3D G3DSA:3.30.230.10 216 390 9.9E-48 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 135 149 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 338 361 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 448 469 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 26 39 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 362 387 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 238 261 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 311 326 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 149 164 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 503 519 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 294 310 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 537 559 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 174 191 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 192 213 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR01098 Topoisomerase IV subunit B signature 469 481 5.8E-129 T 11-11-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 ProSitePatterns PS00177 DNA topoisomerase II signature. 416 424 - T 11-11-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 Gene3D G3DSA:3.30.565.10 15 213 6.2E-77 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 SUPERFAMILY SSF56719 388 619 2.22E-80 T 11-11-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 Pfam PF01751 Toprim domain 413 522 5.9E-13 T 11-11-2016 IPR006171 Toprim domain vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 28 171 2.1E-18 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 556 618 1.1E-27 T 11-11-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 Gene3D G3DSA:3.40.50.670 398 609 1.4E-80 T 11-11-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR00418 DNA topoisomerase II family signature 109 123 8.5E-59 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR00418 DNA topoisomerase II family signature 497 514 8.5E-59 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR00418 DNA topoisomerase II family signature 560 576 8.5E-59 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR00418 DNA topoisomerase II family signature 479 495 8.5E-59 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR00418 DNA topoisomerase II family signature 31 46 8.5E-59 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR00418 DNA topoisomerase II family signature 517 529 8.5E-59 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR00418 DNA topoisomerase II family signature 266 279 8.5E-59 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR00418 DNA topoisomerase II family signature 414 428 8.5E-59 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 PRINTS PR00418 DNA topoisomerase II family signature 66 79 8.5E-59 T 11-11-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 SMART SM00387 27 173 4.1E-19 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 SUPERFAMILY SSF54211 217 382 1.37E-46 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS02825 6078da91d3df4939513fbb721a95cf86 626 Pfam PF00204 DNA gyrase B 218 384 1.6E-42 T 11-11-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS10230 4349a7b2092a5a29ee4377cf13fed1c6 182 Gene3D G3DSA:3.60.21.10 1 172 9.6E-45 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS10230 4349a7b2092a5a29ee4377cf13fed1c6 182 SUPERFAMILY SSF56300 1 163 4.88E-37 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS10230 4349a7b2092a5a29ee4377cf13fed1c6 182 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 1 162 1.5E-26 T 11-11-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 vm_RS10230 4349a7b2092a5a29ee4377cf13fed1c6 182 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 1 169 4.6E-33 T 11-11-2016 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 vm_RS08965 392332db366276a06b7f523fa563c0ce 290 SMART SM00481 3 70 9.9E-17 T 11-11-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 vm_RS08965 392332db366276a06b7f523fa563c0ce 290 SUPERFAMILY SSF89550 165 275 2.49E-52 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 vm_RS08965 392332db366276a06b7f523fa563c0ce 290 SUPERFAMILY SSF89550 1 83 2.49E-52 T 11-11-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 vm_RS08965 392332db366276a06b7f523fa563c0ce 290 Pfam PF02811 PHP domain 4 173 3.3E-7 T 11-11-2016 IPR004013 PHP domain GO:0003824 vm_RS08965 392332db366276a06b7f523fa563c0ce 290 Gene3D G3DSA:3.20.20.140 157 261 3.0E-44 T 11-11-2016 vm_RS08965 392332db366276a06b7f523fa563c0ce 290 Gene3D G3DSA:3.20.20.140 1 88 3.0E-44 T 11-11-2016 vm_RS07395 8eac52dea9f1e15ddfe9a8825dee1fe0 258 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 6 236 56.169 T 11-11-2016 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 vm_RS07395 8eac52dea9f1e15ddfe9a8825dee1fe0 258 SUPERFAMILY SSF52467 6 234 4.04E-72 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS07395 8eac52dea9f1e15ddfe9a8825dee1fe0 258 Gene3D G3DSA:3.40.50.1220 6 21 1.2E-39 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS07395 8eac52dea9f1e15ddfe9a8825dee1fe0 258 Gene3D G3DSA:3.40.50.1220 165 231 1.2E-39 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS07395 8eac52dea9f1e15ddfe9a8825dee1fe0 258 Gene3D G3DSA:3.40.50.1220 71 113 1.2E-39 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS07395 8eac52dea9f1e15ddfe9a8825dee1fe0 258 Pfam PF02146 Sir2 family 13 186 6.1E-50 T 11-11-2016 IPR003000 Sirtuin family GO:0070403 vm_RS07395 8eac52dea9f1e15ddfe9a8825dee1fe0 258 Gene3D G3DSA:3.30.1600.10 114 158 7.3E-28 T 11-11-2016 IPR026591 Sirtuin family, catalytic core small domain vm_RS07395 8eac52dea9f1e15ddfe9a8825dee1fe0 258 Gene3D G3DSA:3.30.1600.10 22 61 7.3E-28 T 11-11-2016 IPR026591 Sirtuin family, catalytic core small domain vm_RS08690 11cf406c573f97546c8cb544c8c38110 474 Pfam PF00929 Exonuclease 11 191 2.0E-22 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS08690 11cf406c573f97546c8cb544c8c38110 474 Pfam PF08411 Exonuclease C-terminal 210 470 1.1E-104 T 11-11-2016 IPR013620 Exonuclease C-terminal GO:0006281|GO:0008852 vm_RS08690 11cf406c573f97546c8cb544c8c38110 474 SUPERFAMILY SSF53098 7 472 1.1E-134 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS08690 11cf406c573f97546c8cb544c8c38110 474 Gene3D G3DSA:3.30.420.10 2 197 1.2E-82 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS08690 11cf406c573f97546c8cb544c8c38110 474 SMART SM00479 8 201 0.0092 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS08690 11cf406c573f97546c8cb544c8c38110 474 PIRSF PIRSF000977 1 474 5.1E-199 T 11-11-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 SUPERFAMILY SSF57783 706 749 7.31E-7 T 11-11-2016 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Pfam PF01131 DNA topoisomerase 165 572 6.1E-129 T 11-11-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 SUPERFAMILY SSF57783 815 871 4.76E-22 T 11-11-2016 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Gene3D G3DSA:2.70.20.10 221 341 7.2E-33 T 11-11-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Gene3D G3DSA:2.70.20.10 346 480 1.5E-34 T 11-11-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 317 331 - T 11-11-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 SUPERFAMILY SSF56712 3 616 2.88E-200 T 11-11-2016 IPR023405 DNA topoisomerase, type IA, core domain vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Pfam PF01751 Toprim domain 5 150 7.2E-32 T 11-11-2016 IPR006171 Toprim domain vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Pfam PF08272 Topoisomerase I zinc-ribbon-like 763 799 1.5E-10 T 11-11-2016 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Pfam PF08272 Topoisomerase I zinc-ribbon-like 830 870 4.0E-19 T 11-11-2016 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 729 54.916 T 11-11-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 SMART SM00437 280 534 2.8E-122 T 11-11-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 SMART SM00493 3 140 2.6E-30 T 11-11-2016 IPR006171 Toprim domain vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Gene3D G3DSA:1.10.460.10 481 585 1.4E-59 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Gene3D G3DSA:1.10.460.10 172 219 1.4E-59 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 SUPERFAMILY SSF57783 750 813 2.55E-19 T 11-11-2016 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 641 1.3E-250 T 11-11-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Gene3D G3DSA:3.30.65.10 594 630 2.1E-10 T 11-11-2016 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Gene3D G3DSA:3.30.65.10 750 812 1.6E-25 T 11-11-2016 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Gene3D G3DSA:3.30.65.10 711 749 1.5E-11 T 11-11-2016 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 SMART SM00436 141 229 1.9E-48 T 11-11-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Gene3D G3DSA:3.40.50.140 1 171 2.9E-57 T 11-11-2016 IPR006171 Toprim domain vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 322 331 7.2E-36 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 114 127 7.2E-36 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 199 217 7.2E-36 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 398 414 7.2E-36 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 497 511 7.2E-36 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 605 629 1.3E-4 T 11-11-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 715 751 6.3E-11 T 11-11-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 vm_RS06300 6df591860b7b48e8b9b15187171c87be 876 Gene3D G3DSA:2.20.25.10 814 871 2.1E-28 T 11-11-2016 vm_RS07480 6ab53f72eff942865671cbb71b7c85cd 336 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 292 312 - T 11-11-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 vm_RS07480 6ab53f72eff942865671cbb71b7c85cd 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 2 336 51.023 T 11-11-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS07480 6ab53f72eff942865671cbb71b7c85cd 336 SUPERFAMILY SSF51395 1 336 4.4E-106 T 11-11-2016 vm_RS07480 6ab53f72eff942865671cbb71b7c85cd 336 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 3 336 3.8E-148 T 11-11-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS07480 6ab53f72eff942865671cbb71b7c85cd 336 Gene3D G3DSA:3.20.20.70 1 336 2.2E-127 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS07480 6ab53f72eff942865671cbb71b7c85cd 336 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 80 99 - T 11-11-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 vm_RS07480 6ab53f72eff942865671cbb71b7c85cd 336 PIRSF PIRSF000164 10 336 1.1E-102 T 11-11-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 vm_RS07480 6ab53f72eff942865671cbb71b7c85cd 336 Pfam PF01180 Dihydroorotate dehydrogenase 47 336 1.8E-90 T 11-11-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 vm_RS00920 862f72438b1c4e2480118352ec9d10ce 336 Pfam PF03934 Type II secretion system (T2SS), protein K 30 317 6.1E-87 T 11-11-2016 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 vm_RS00920 862f72438b1c4e2480118352ec9d10ce 336 PIRSF PIRSF002786 1 328 7.2E-62 T 11-11-2016 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 vm_RS00920 862f72438b1c4e2480118352ec9d10ce 336 Gene3D G3DSA:1.10.40.60 216 285 1.3E-26 T 11-11-2016 vm_RS00920 862f72438b1c4e2480118352ec9d10ce 336 SUPERFAMILY SSF158544 101 213 5.49E-28 T 11-11-2016 vm_RS00920 862f72438b1c4e2480118352ec9d10ce 336 Gene3D G3DSA:3.30.1300.30 26 103 1.1E-31 T 11-11-2016 vm_RS00920 862f72438b1c4e2480118352ec9d10ce 336 SUPERFAMILY SSF158544 215 284 9.94E-19 T 11-11-2016 vm_RS00920 862f72438b1c4e2480118352ec9d10ce 336 SUPERFAMILY SSF54523 36 100 1.26E-37 T 11-11-2016 vm_RS00920 862f72438b1c4e2480118352ec9d10ce 336 SUPERFAMILY SSF54523 285 325 1.26E-37 T 11-11-2016 vm_RS00920 862f72438b1c4e2480118352ec9d10ce 336 Gene3D G3DSA:1.10.40.60 104 214 1.8E-34 T 11-11-2016 vm_RS03450 9115b0872a6e2b8ec2c33fc463199e56 257 SMART SM00900 144 242 9.8E-33 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 vm_RS03450 9115b0872a6e2b8ec2c33fc463199e56 257 Hamap MF_00427 Na(+)-translocating NADH-quinone reductase subunit C [nqrC]. 6 254 36.489 T 11-11-2016 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0055114 vm_RS03450 9115b0872a6e2b8ec2c33fc463199e56 257 TIGRFAM TIGR01938 nqrC: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit 5 250 8.7E-96 T 11-11-2016 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0055114 vm_RS03450 9115b0872a6e2b8ec2c33fc463199e56 257 Pfam PF04205 FMN-binding domain 144 239 5.0E-15 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 vm_RS03450 9115b0872a6e2b8ec2c33fc463199e56 257 PIRSF PIRSF009437 1 257 2.9E-109 T 11-11-2016 IPR010204 Na(+)-translocating NADH-quinone reductase subunit C GO:0006814|GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0055114 vm_RS02050 77c65c7ea5f4a577d9f13264ec012c6b 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 11-11-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02050 77c65c7ea5f4a577d9f13264ec012c6b 144 SUPERFAMILY SSF52080 4 143 4.58E-46 T 11-11-2016 IPR021131 Ribosomal protein L18e/L15P vm_RS02050 77c65c7ea5f4a577d9f13264ec012c6b 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 3 143 2.4E-49 T 11-11-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02050 77c65c7ea5f4a577d9f13264ec012c6b 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 19.001 T 11-11-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 vm_RS02050 77c65c7ea5f4a577d9f13264ec012c6b 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 2.0E-31 T 11-11-2016 IPR021131 Ribosomal protein L18e/L15P vm_RS02050 77c65c7ea5f4a577d9f13264ec012c6b 144 Gene3D G3DSA:3.100.10.10 32 143 2.1E-26 T 11-11-2016 vm_RS02410 9327ae97c3e9057d07f066b424f91cc9 320 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 289 1.7E-55 T 11-11-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 vm_RS02410 9327ae97c3e9057d07f066b424f91cc9 320 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 225 241 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site vm_RS02410 9327ae97c3e9057d07f066b424f91cc9 320 Gene3D G3DSA:3.40.50.720 113 290 7.0E-61 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS02410 9327ae97c3e9057d07f066b424f91cc9 320 SUPERFAMILY SSF52283 27 122 1.89E-29 T 11-11-2016 vm_RS02410 9327ae97c3e9057d07f066b424f91cc9 320 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 196 218 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site vm_RS02410 9327ae97c3e9057d07f066b424f91cc9 320 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 32 320 1.0E-22 T 11-11-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 vm_RS02410 9327ae97c3e9057d07f066b424f91cc9 320 Gene3D G3DSA:3.40.50.720 27 112 3.1E-26 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS02410 9327ae97c3e9057d07f066b424f91cc9 320 SUPERFAMILY SSF51735 103 290 7.54E-53 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS07315 7288f7a8a9706beb9f9f708897f64248 271 Gene3D G3DSA:3.40.190.10 188 270 2.1E-28 T 11-11-2016 vm_RS07315 7288f7a8a9706beb9f9f708897f64248 271 Pfam PF12849 PBP superfamily domain 25 246 5.4E-32 T 11-11-2016 IPR024370 PBP domain vm_RS07315 7288f7a8a9706beb9f9f708897f64248 271 SUPERFAMILY SSF53850 27 256 5.94E-34 T 11-11-2016 vm_RS07315 7288f7a8a9706beb9f9f708897f64248 271 Gene3D G3DSA:3.40.190.10 16 153 2.2E-47 T 11-11-2016 vm_RS03040 9731909152efff8d06628a6786be3ddd 286 Gene3D G3DSA:3.40.190.10 91 207 5.5E-7 T 11-11-2016 vm_RS03040 9731909152efff8d06628a6786be3ddd 286 Gene3D G3DSA:1.10.10.10 3 79 3.3E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS03040 9731909152efff8d06628a6786be3ddd 286 SUPERFAMILY SSF53850 90 280 2.17E-22 T 11-11-2016 vm_RS03040 9731909152efff8d06628a6786be3ddd 286 SUPERFAMILY SSF46785 4 85 7.56E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS03040 9731909152efff8d06628a6786be3ddd 286 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.1E-13 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS03040 9731909152efff8d06628a6786be3ddd 286 Pfam PF03466 LysR substrate binding domain 90 276 7.0E-21 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS03575 71bc45c301cc3884ffba2bd6bd0b0e25 156 Gene3D G3DSA:1.10.940.10 6 154 1.6E-42 T 11-11-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 vm_RS03575 71bc45c301cc3884ffba2bd6bd0b0e25 156 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 8 153 22.982 T 11-11-2016 IPR011605 NusB antitermination factor GO:0006353 vm_RS03575 71bc45c301cc3884ffba2bd6bd0b0e25 156 SUPERFAMILY SSF48013 7 153 1.31E-38 T 11-11-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 vm_RS03575 71bc45c301cc3884ffba2bd6bd0b0e25 156 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 10 150 4.9E-42 T 11-11-2016 IPR011605 NusB antitermination factor GO:0006353 vm_RS03575 71bc45c301cc3884ffba2bd6bd0b0e25 156 Pfam PF01029 NusB family 11 149 1.8E-35 T 11-11-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 vm_RS03335 714883596376739bca18e00d2579294a 1208 Gene3D G3DSA:3.40.50.300 352 450 5.5E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03335 714883596376739bca18e00d2579294a 1208 Gene3D G3DSA:3.40.50.300 16 87 5.5E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03335 714883596376739bca18e00d2579294a 1208 Gene3D G3DSA:3.40.50.300 125 155 5.5E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03335 714883596376739bca18e00d2579294a 1208 Gene3D G3DSA:3.40.50.300 733 887 1.0E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03335 714883596376739bca18e00d2579294a 1208 Gene3D G3DSA:3.40.50.300 451 581 1.0E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03335 714883596376739bca18e00d2579294a 1208 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 12 1189 0.0 T 11-11-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 vm_RS03335 714883596376739bca18e00d2579294a 1208 Pfam PF13361 UvrD-like helicase C-terminal domain 707 813 3.8E-12 T 11-11-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 vm_RS03335 714883596376739bca18e00d2579294a 1208 Pfam PF12705 PD-(D/E)XK nuclease superfamily 966 1174 1.3E-6 T 11-11-2016 vm_RS03335 714883596376739bca18e00d2579294a 1208 Gene3D G3DSA:1.10.486.10 584 732 8.7E-49 T 11-11-2016 vm_RS03335 714883596376739bca18e00d2579294a 1208 Gene3D G3DSA:3.90.320.10 895 1193 7.4E-101 T 11-11-2016 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 vm_RS03335 714883596376739bca18e00d2579294a 1208 SUPERFAMILY SSF52980 904 1190 3.65E-84 T 11-11-2016 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 vm_RS03335 714883596376739bca18e00d2579294a 1208 SUPERFAMILY SSF52540 123 207 2.84E-107 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03335 714883596376739bca18e00d2579294a 1208 SUPERFAMILY SSF52540 326 825 2.84E-107 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03335 714883596376739bca18e00d2579294a 1208 SUPERFAMILY SSF52540 16 85 2.84E-107 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03335 714883596376739bca18e00d2579294a 1208 Pfam PF00580 UvrD/REP helicase N-terminal domain 19 437 2.4E-58 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 vm_RS03335 714883596376739bca18e00d2579294a 1208 Gene3D G3DSA:1.10.3170.10 160 350 7.9E-54 T 11-11-2016 vm_RS03335 714883596376739bca18e00d2579294a 1208 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 10 1190 22.868 T 11-11-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 SUPERFAMILY SSF53706 42 660 6.28E-167 T 11-11-2016 vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 TIGRFAM TIGR02164 torA: trimethylamine-N-oxide reductase TorA 1 820 0.0 T 11-11-2016 IPR011887 Trimethylamine-N-oxide reductase TorA GO:0030151|GO:0042597|GO:0050626 vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 Gene3D G3DSA:3.40.228.10 186 394 1.7E-55 T 11-11-2016 vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 Gene3D G3DSA:3.90.55.10 505 608 1.8E-33 T 11-11-2016 vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 Gene3D G3DSA:2.40.40.20 649 812 5.3E-55 T 11-11-2016 vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 SUPERFAMILY SSF50692 669 816 8.14E-43 T 11-11-2016 IPR009010 Aspartate decarboxylase-like domain vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 Gene3D G3DSA:3.40.50.740 395 504 2.2E-50 T 11-11-2016 vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 Gene3D G3DSA:3.40.50.740 81 181 2.2E-50 T 11-11-2016 vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 503 520 - T 11-11-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 Pfam PF00384 Molybdopterin oxidoreductase 87 560 6.7E-79 T 11-11-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 Pfam PF01568 Molydopterin dinucleotide binding domain 676 796 8.1E-24 T 11-11-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 30 3.4E-4 T 11-11-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal vm_RS06490 0b19757616cffa4affb06a3214d77be3 820 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 716 743 - T 11-11-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 vm_RS01875 67897b72736613d23a247967d6cbc228 289 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 7 214 9.9E-70 T 11-11-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 vm_RS01875 67897b72736613d23a247967d6cbc228 289 PRINTS PR00478 Phosphoribulokinase family signature 12 29 1.2E-26 T 11-11-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 vm_RS01875 67897b72736613d23a247967d6cbc228 289 PRINTS PR00478 Phosphoribulokinase family signature 126 144 1.2E-26 T 11-11-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 vm_RS01875 67897b72736613d23a247967d6cbc228 289 PRINTS PR00478 Phosphoribulokinase family signature 164 181 1.2E-26 T 11-11-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 vm_RS01875 67897b72736613d23a247967d6cbc228 289 PRINTS PR00478 Phosphoribulokinase family signature 182 205 1.2E-26 T 11-11-2016 IPR006082 Phosphoribulokinase GO:0005524|GO:0005975|GO:0008974 KEGG: 00710+2.7.1.19|MetaCyc: PWY-5723 vm_RS01875 67897b72736613d23a247967d6cbc228 289 Gene3D G3DSA:3.40.50.300 1 288 3.8E-127 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01875 67897b72736613d23a247967d6cbc228 289 SUPERFAMILY SSF52540 4 286 4.11E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03760 92d57f97334d156c32ec0c47bf70140d 346 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 8 345 47.357 T 11-11-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 vm_RS03760 92d57f97334d156c32ec0c47bf70140d 346 SUPERFAMILY SSF55326 8 171 1.79E-54 T 11-11-2016 vm_RS03760 92d57f97334d156c32ec0c47bf70140d 346 Pfam PF00586 AIR synthase related protein, N-terminal domain 57 165 5.1E-16 T 11-11-2016 IPR016188 PurM-like, N-terminal domain vm_RS03760 92d57f97334d156c32ec0c47bf70140d 346 Gene3D G3DSA:3.90.650.10 172 344 2.5E-67 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain vm_RS03760 92d57f97334d156c32ec0c47bf70140d 346 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 8 334 1.3E-149 T 11-11-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 vm_RS03760 92d57f97334d156c32ec0c47bf70140d 346 SUPERFAMILY SSF56042 172 342 5.08E-62 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain vm_RS03760 92d57f97334d156c32ec0c47bf70140d 346 Gene3D G3DSA:3.30.1330.10 23 171 6.4E-65 T 11-11-2016 IPR016188 PurM-like, N-terminal domain vm_RS03760 92d57f97334d156c32ec0c47bf70140d 346 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 343 2.6E-39 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain vm_RS10160 af98974aa202a57edcc35d768718a39c 556 SUPERFAMILY SSF52374 11 337 5.35E-105 T 11-11-2016 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 Gene3D G3DSA:2.40.240.10 462 548 7.8E-33 T 11-11-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 28 552 3.2E-297 T 11-11-2016 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 60 73 6.0E-10 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 31 43 6.0E-10 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 45 56 6.0E-10 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 220 6.0E-10 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 Gene3D G3DSA:2.40.240.10 348 461 4.5E-50 T 11-11-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 Gene3D G3DSA:3.90.800.10 101 209 3.8E-49 T 11-11-2016 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 SUPERFAMILY SSF50715 340 549 1.88E-78 T 11-11-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 34 45 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 Gene3D G3DSA:1.10.1160.10 263 338 2.5E-39 T 11-11-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 340 529 2.4E-61 T 11-11-2016 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 28 337 2.3E-127 T 11-11-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 1 550 54.537 T 11-11-2016 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 vm_RS10160 af98974aa202a57edcc35d768718a39c 556 Gene3D G3DSA:3.40.50.620 27 96 1.3E-43 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS10160 af98974aa202a57edcc35d768718a39c 556 Gene3D G3DSA:3.40.50.620 212 262 1.3E-43 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS00010 e09f05e3f7fd7712e71b57b339e9151d 366 SUPERFAMILY SSF55979 245 366 1.28E-36 T 11-11-2016 vm_RS00010 e09f05e3f7fd7712e71b57b339e9151d 366 SMART SM00480 17 362 1.8E-140 T 11-11-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00010 e09f05e3f7fd7712e71b57b339e9151d 366 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 245 365 1.2E-38 T 11-11-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00010 e09f05e3f7fd7712e71b57b339e9151d 366 Gene3D G3DSA:3.10.150.10 1 121 5.1E-32 T 11-11-2016 vm_RS00010 e09f05e3f7fd7712e71b57b339e9151d 366 SUPERFAMILY SSF55979 1 118 1.11E-28 T 11-11-2016 vm_RS00010 e09f05e3f7fd7712e71b57b339e9151d 366 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 366 8.1E-108 T 11-11-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00010 e09f05e3f7fd7712e71b57b339e9151d 366 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 243 6.4E-34 T 11-11-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00010 e09f05e3f7fd7712e71b57b339e9151d 366 PIRSF PIRSF000804 1 366 7.9E-118 T 11-11-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00010 e09f05e3f7fd7712e71b57b339e9151d 366 Gene3D G3DSA:3.10.150.10 249 366 1.0E-38 T 11-11-2016 vm_RS00010 e09f05e3f7fd7712e71b57b339e9151d 366 Gene3D G3DSA:3.10.150.10 122 248 3.6E-36 T 11-11-2016 vm_RS00010 e09f05e3f7fd7712e71b57b339e9151d 366 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 1.5E-37 T 11-11-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS00010 e09f05e3f7fd7712e71b57b339e9151d 366 SUPERFAMILY SSF55979 126 244 1.66E-27 T 11-11-2016 vm_RS01530 544301ed8a8449584ca1c590d17e9486 335 PIRSF PIRSF004532 1 331 3.6E-136 T 11-11-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 vm_RS01530 544301ed8a8449584ca1c590d17e9486 335 SUPERFAMILY SSF56655 1 324 6.71E-109 T 11-11-2016 vm_RS01530 544301ed8a8449584ca1c590d17e9486 335 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 3 321 6.8E-131 T 11-11-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 vm_RS01530 544301ed8a8449584ca1c590d17e9486 335 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 1 329 2.4E-171 T 11-11-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 vm_RS01530 544301ed8a8449584ca1c590d17e9486 335 Gene3D G3DSA:3.30.540.10 1 170 9.5E-66 T 11-11-2016 vm_RS01530 544301ed8a8449584ca1c590d17e9486 335 Gene3D G3DSA:3.30.540.10 171 328 1.7E-47 T 11-11-2016 vm_RS02760 55d64164563263d4c82c7d48fcdca5d0 202 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 23 201 1.1E-51 T 11-11-2016 IPR016476 SH3 domain protein vm_RS02760 55d64164563263d4c82c7d48fcdca5d0 202 Gene3D G3DSA:1.20.5.170 93 180 7.3E-5 T 11-11-2016 vm_RS02760 55d64164563263d4c82c7d48fcdca5d0 202 SMART SM00287 19 85 6.5E-10 T 11-11-2016 IPR003646 SH3-like domain, bacterial-type vm_RS02760 55d64164563263d4c82c7d48fcdca5d0 202 Pfam PF08239 Bacterial SH3 domain 31 81 2.1E-9 T 11-11-2016 IPR003646 SH3-like domain, bacterial-type vm_RS02760 55d64164563263d4c82c7d48fcdca5d0 202 PIRSF PIRSF006158 1 202 2.2E-68 T 11-11-2016 IPR016476 SH3 domain protein vm_RS03355 2c30e019f6db6eaa7e6361a8aa965b14 456 Gene3D G3DSA:3.40.1160.10 34 305 2.7E-68 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS03355 2c30e019f6db6eaa7e6361a8aa965b14 456 Pfam PF00696 Amino acid kinase family 36 279 7.3E-26 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS03355 2c30e019f6db6eaa7e6361a8aa965b14 456 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 456 219.195 T 11-11-2016 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 vm_RS03355 2c30e019f6db6eaa7e6361a8aa965b14 456 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 19 456 2.1E-227 T 11-11-2016 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 vm_RS03355 2c30e019f6db6eaa7e6361a8aa965b14 456 SUPERFAMILY SSF55729 311 433 5.49E-17 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS03355 2c30e019f6db6eaa7e6361a8aa965b14 456 Gene3D G3DSA:3.40.630.30 309 453 1.5E-41 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS03355 2c30e019f6db6eaa7e6361a8aa965b14 456 PIRSF PIRSF000423 9 456 1.5E-205 T 11-11-2016 IPR010167 Amino-acid N-acetyltransferase GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154 vm_RS03355 2c30e019f6db6eaa7e6361a8aa965b14 456 SUPERFAMILY SSF53633 15 305 8.8E-67 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS02815 96ed18c2450a946f11073dadc4e47384 272 Gene3D G3DSA:3.60.21.10 10 251 1.3E-42 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS02815 96ed18c2450a946f11073dadc4e47384 272 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 203 258 4.0E-27 T 11-11-2016 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 vm_RS02815 96ed18c2450a946f11073dadc4e47384 272 SUPERFAMILY SSF56300 12 270 1.46E-56 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS02815 96ed18c2450a946f11073dadc4e47384 272 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 12 258 41.253 T 11-11-2016 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 vm_RS02815 96ed18c2450a946f11073dadc4e47384 272 Pfam PF00149 Calcineurin-like phosphoesterase 13 204 4.7E-15 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 vm_RS02350 844bb0e6169e622dc73976e7dbea6b56 109 Pfam PF13466 STAS domain 16 92 1.3E-15 T 11-11-2016 IPR002645 STAS domain vm_RS02350 844bb0e6169e622dc73976e7dbea6b56 109 SUPERFAMILY SSF52091 1 97 2.35E-17 T 11-11-2016 IPR002645 STAS domain vm_RS02350 844bb0e6169e622dc73976e7dbea6b56 109 Gene3D G3DSA:3.30.750.24 14 96 5.3E-14 T 11-11-2016 IPR002645 STAS domain vm_RS07440 30cdd30bb6cbefda1e318e9a13924575 598 Gene3D G3DSA:3.40.50.300 360 594 7.5E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07440 30cdd30bb6cbefda1e318e9a13924575 598 Pfam PF00005 ABC transporter 376 524 3.0E-32 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS07440 30cdd30bb6cbefda1e318e9a13924575 598 ProSitePatterns PS00211 ABC transporters family signature. 496 510 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS07440 30cdd30bb6cbefda1e318e9a13924575 598 SMART SM00382 385 568 3.2E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS07440 30cdd30bb6cbefda1e318e9a13924575 598 Pfam PF00664 ABC transporter transmembrane region 28 312 3.2E-31 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 vm_RS07440 30cdd30bb6cbefda1e318e9a13924575 598 SUPERFAMILY SSF90123 12 345 1.83E-56 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 vm_RS07440 30cdd30bb6cbefda1e318e9a13924575 598 Gene3D G3DSA:1.20.1560.10 12 341 3.7E-54 T 11-11-2016 vm_RS07440 30cdd30bb6cbefda1e318e9a13924575 598 SUPERFAMILY SSF52540 355 592 4.14E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04810 c5c3422a2f68be5de5af7b7f6b434a18 519 Pfam PF00916 Sulfate permease family 13 374 6.0E-56 T 11-11-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 vm_RS04810 c5c3422a2f68be5de5af7b7f6b434a18 519 Pfam PF01740 STAS domain 416 509 8.2E-7 T 11-11-2016 IPR002645 STAS domain vm_RS04810 c5c3422a2f68be5de5af7b7f6b434a18 519 SUPERFAMILY SSF52091 415 497 8.04E-11 T 11-11-2016 IPR002645 STAS domain vm_RS04810 c5c3422a2f68be5de5af7b7f6b434a18 519 Gene3D G3DSA:3.30.750.24 416 504 3.1E-8 T 11-11-2016 IPR002645 STAS domain vm_RS00220 187cf913feb1a416fb694d30b4c1e27f 305 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 4 282 56.265 T 11-11-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS00220 187cf913feb1a416fb694d30b4c1e27f 305 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 171 195 - T 11-11-2016 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS00220 187cf913feb1a416fb694d30b4c1e27f 305 PIRSF PIRSF000166 1 305 7.8E-127 T 11-11-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS00220 187cf913feb1a416fb694d30b4c1e27f 305 Pfam PF01218 Coproporphyrinogen III oxidase 10 305 9.0E-131 T 11-11-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS00220 187cf913feb1a416fb694d30b4c1e27f 305 PRINTS PR00073 Coprogen oxidase signature 32 48 9.7E-70 T 11-11-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS00220 187cf913feb1a416fb694d30b4c1e27f 305 PRINTS PR00073 Coprogen oxidase signature 239 266 9.7E-70 T 11-11-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS00220 187cf913feb1a416fb694d30b4c1e27f 305 PRINTS PR00073 Coprogen oxidase signature 167 196 9.7E-70 T 11-11-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS00220 187cf913feb1a416fb694d30b4c1e27f 305 PRINTS PR00073 Coprogen oxidase signature 95 119 9.7E-70 T 11-11-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS00220 187cf913feb1a416fb694d30b4c1e27f 305 PRINTS PR00073 Coprogen oxidase signature 130 152 9.7E-70 T 11-11-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS00220 187cf913feb1a416fb694d30b4c1e27f 305 PRINTS PR00073 Coprogen oxidase signature 267 293 9.7E-70 T 11-11-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS00220 187cf913feb1a416fb694d30b4c1e27f 305 Gene3D G3DSA:3.40.1500.10 4 305 7.2E-136 T 11-11-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS00220 187cf913feb1a416fb694d30b4c1e27f 305 SUPERFAMILY SSF102886 6 305 1.22E-136 T 11-11-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS13080 5ba39bf03a49dc147c58a478a2e9ee32 200 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 3 193 1.6E-64 T 11-11-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206|Reactome: R-HSA-15869 vm_RS13080 5ba39bf03a49dc147c58a478a2e9ee32 200 Gene3D G3DSA:3.90.950.10 1 196 2.8E-84 T 11-11-2016 IPR029001 Inosine triphosphate pyrophosphatase-like vm_RS13080 5ba39bf03a49dc147c58a478a2e9ee32 200 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 2 196 52.542 T 11-11-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 vm_RS13080 5ba39bf03a49dc147c58a478a2e9ee32 200 SUPERFAMILY SSF52972 1 195 5.76E-77 T 11-11-2016 IPR029001 Inosine triphosphate pyrophosphatase-like vm_RS13080 5ba39bf03a49dc147c58a478a2e9ee32 200 Pfam PF01725 Ham1 family 4 192 7.1E-57 T 11-11-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206|Reactome: R-HSA-15869 vm_RS01485 a68bce3cc19afc94f7072c3b1a614f5b 483 Pfam PF00206 Lyase 23 355 1.2E-104 T 11-11-2016 IPR022761 Fumarate lyase, N-terminal vm_RS01485 a68bce3cc19afc94f7072c3b1a614f5b 483 Pfam PF10415 Fumarase C C-terminus 421 474 3.5E-18 T 11-11-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 vm_RS01485 a68bce3cc19afc94f7072c3b1a614f5b 483 ProSitePatterns PS00163 Fumarate lyases signature. 330 339 - T 11-11-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 vm_RS01485 a68bce3cc19afc94f7072c3b1a614f5b 483 Gene3D G3DSA:1.20.200.10 153 415 2.9E-87 T 11-11-2016 vm_RS01485 a68bce3cc19afc94f7072c3b1a614f5b 483 SUPERFAMILY SSF48557 14 468 4.57E-145 T 11-11-2016 IPR008948 L-Aspartase-like GO:0003824 vm_RS01485 a68bce3cc19afc94f7072c3b1a614f5b 483 PRINTS PR00149 Fumarate lyase superfamily signature 284 311 5.2E-25 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS01485 a68bce3cc19afc94f7072c3b1a614f5b 483 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 5.2E-25 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS01485 a68bce3cc19afc94f7072c3b1a614f5b 483 PRINTS PR00149 Fumarate lyase superfamily signature 330 346 5.2E-25 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS01485 a68bce3cc19afc94f7072c3b1a614f5b 483 PRINTS PR00149 Fumarate lyase superfamily signature 193 211 5.2E-25 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS01485 a68bce3cc19afc94f7072c3b1a614f5b 483 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 16 482 1.5E-254 T 11-11-2016 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 vm_RS01485 a68bce3cc19afc94f7072c3b1a614f5b 483 Gene3D G3DSA:1.10.40.30 421 472 5.3E-20 T 11-11-2016 vm_RS01485 a68bce3cc19afc94f7072c3b1a614f5b 483 Gene3D G3DSA:1.10.275.10 15 152 4.7E-55 T 11-11-2016 IPR024083 Fumarase/histidase, N-terminal vm_RS04285 855ca16a7a8dcdba4b6a10033014ab59 579 PRINTS PR01009 Flagellar M-ring protein signature 224 242 7.3E-24 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 vm_RS04285 855ca16a7a8dcdba4b6a10033014ab59 579 PRINTS PR01009 Flagellar M-ring protein signature 181 195 7.3E-24 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 vm_RS04285 855ca16a7a8dcdba4b6a10033014ab59 579 PRINTS PR01009 Flagellar M-ring protein signature 294 312 7.3E-24 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 vm_RS04285 855ca16a7a8dcdba4b6a10033014ab59 579 PRINTS PR01009 Flagellar M-ring protein signature 149 167 7.3E-24 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 vm_RS04285 855ca16a7a8dcdba4b6a10033014ab59 579 PRINTS PR01009 Flagellar M-ring protein signature 374 398 7.3E-24 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 vm_RS04285 855ca16a7a8dcdba4b6a10033014ab59 579 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 52 578 4.8E-76 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 vm_RS04285 855ca16a7a8dcdba4b6a10033014ab59 579 Pfam PF08345 Flagellar M-ring protein C-terminal 281 451 2.4E-40 T 11-11-2016 IPR013556 Flagellar M-ring C-terminal vm_RS04285 855ca16a7a8dcdba4b6a10033014ab59 579 Pfam PF01514 Secretory protein of YscJ/FliF family 62 248 1.4E-55 T 11-11-2016 IPR006182 Secretory protein YscJ/FliF vm_RS04285 855ca16a7a8dcdba4b6a10033014ab59 579 PIRSF PIRSF004862 29 579 1.2E-158 T 11-11-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 vm_RS00860 414e1a90997f82fcc88c9336276fe7fe 628 Pfam PF05170 AsmA family 1 569 2.9E-159 T 11-11-2016 IPR007844 AsmA vm_RS09525 e083b470032878e685c1ba9ba01c80f3 262 Gene3D G3DSA:3.40.50.1360 77 215 6.7E-14 T 11-11-2016 vm_RS09525 e083b470032878e685c1ba9ba01c80f3 262 Pfam PF08220 DeoR-like helix-turn-helix domain 6 59 1.4E-12 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS09525 e083b470032878e685c1ba9ba01c80f3 262 Gene3D G3DSA:1.10.10.10 1 48 3.5E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09525 e083b470032878e685c1ba9ba01c80f3 262 Pfam PF00455 DeoR C terminal sensor domain 75 232 9.4E-51 T 11-11-2016 IPR014036 DeoR C-terminal sensor domain vm_RS09525 e083b470032878e685c1ba9ba01c80f3 262 SUPERFAMILY SSF46785 5 70 5.65E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09525 e083b470032878e685c1ba9ba01c80f3 262 SUPERFAMILY SSF100950 74 234 5.69E-33 T 11-11-2016 vm_RS09525 e083b470032878e685c1ba9ba01c80f3 262 SMART SM00420 6 58 3.2E-9 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS09525 e083b470032878e685c1ba9ba01c80f3 262 SMART SM01134 73 233 5.0E-67 T 11-11-2016 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 SMART SM00382 347 491 1.1E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 SUPERFAMILY SSF88697 10 200 1.12E-48 T 11-11-2016 IPR015947 PUA-like domain vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 10 196 2.1E-40 T 11-11-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 SUPERFAMILY SSF52540 313 586 7.9E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 702 721 2.2E-56 T 11-11-2016 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 672 691 2.2E-56 T 11-11-2016 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 725 743 2.2E-56 T 11-11-2016 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 594 610 2.2E-56 T 11-11-2016 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 355 374 2.2E-56 T 11-11-2016 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 351 488 1.4E-17 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 Hamap MF_01973 Lon protease [lon]. 11 771 72.269 T 11-11-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 SUPERFAMILY SSF54211 594 769 3.34E-60 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 Gene3D G3DSA:3.30.230.10 589 770 2.9E-78 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 SMART SM00464 10 201 3.0E-76 T 11-11-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 Gene3D G3DSA:3.40.50.300 309 498 1.7E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 PIRSF PIRSF001174 1 774 0.0 T 11-11-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 569 771 6.5E-100 T 11-11-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 Gene3D G3DSA:1.10.8.60 499 583 4.5E-33 T 11-11-2016 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 TIGRFAM TIGR00763 lon: endopeptidase La 12 770 0.0 T 11-11-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 vm_RS05320 a33a5766157e6fe408ce4c21addfa3ce 789 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 675 683 - T 11-11-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 vm_RS10200 5d17b428e5341ebddf099bd0a7824322 322 ProSitePatterns PS00534 Ferrochelatase signature. 189 207 - T 11-11-2016 IPR019772 Ferrochelatase, active site GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 vm_RS10200 5d17b428e5341ebddf099bd0a7824322 322 Gene3D G3DSA:3.40.50.1400 5 201 3.8E-68 T 11-11-2016 vm_RS10200 5d17b428e5341ebddf099bd0a7824322 322 Hamap MF_00323 Ferrochelatase [hemH]. 5 320 37.602 T 11-11-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 vm_RS10200 5d17b428e5341ebddf099bd0a7824322 322 Pfam PF00762 Ferrochelatase 7 317 5.2E-108 T 11-11-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 vm_RS10200 5d17b428e5341ebddf099bd0a7824322 322 TIGRFAM TIGR00109 hemH: ferrochelatase 4 318 3.6E-106 T 11-11-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|Reactome: R-HSA-189451 vm_RS10200 5d17b428e5341ebddf099bd0a7824322 322 Gene3D G3DSA:3.40.50.1400 202 317 7.0E-31 T 11-11-2016 vm_RS10200 5d17b428e5341ebddf099bd0a7824322 322 SUPERFAMILY SSF53800 5 319 3.4E-101 T 11-11-2016 vm_RS13570 88053a7c4b883afaa8e2d5f9690be6a1 451 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 6 449 4.0E-122 T 11-11-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS13570 88053a7c4b883afaa8e2d5f9690be6a1 451 SUPERFAMILY SSF55021 298 394 3.27E-19 T 11-11-2016 vm_RS13570 88053a7c4b883afaa8e2d5f9690be6a1 451 Gene3D G3DSA:3.40.1160.10 107 295 1.1E-60 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS13570 88053a7c4b883afaa8e2d5f9690be6a1 451 Gene3D G3DSA:3.40.1160.10 6 53 1.1E-60 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS13570 88053a7c4b883afaa8e2d5f9690be6a1 451 SUPERFAMILY SSF53633 6 293 3.8E-77 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS13570 88053a7c4b883afaa8e2d5f9690be6a1 451 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 6 449 3.6E-122 T 11-11-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS13570 88053a7c4b883afaa8e2d5f9690be6a1 451 PIRSF PIRSF000726 2 451 2.1E-126 T 11-11-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS13570 88053a7c4b883afaa8e2d5f9690be6a1 451 Pfam PF00696 Amino acid kinase family 6 278 5.3E-48 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS13570 88053a7c4b883afaa8e2d5f9690be6a1 451 ProSitePatterns PS00324 Aspartokinase signature. 6 14 - T 11-11-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS13570 88053a7c4b883afaa8e2d5f9690be6a1 451 SUPERFAMILY SSF55021 377 449 1.03E-14 T 11-11-2016 vm_RS13780 91eeac56a9d1576ac73ddfc37c0889fe 118 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 3 118 1.5E-47 T 11-11-2016 IPR017462 Sulphur relay, TusC/DsrF vm_RS13780 91eeac56a9d1576ac73ddfc37c0889fe 118 SUPERFAMILY SSF75169 2 118 9.03E-38 T 11-11-2016 IPR027396 DsrEFH-like vm_RS13780 91eeac56a9d1576ac73ddfc37c0889fe 118 Pfam PF02635 DsrE/DsrF-like family 3 118 7.2E-28 T 11-11-2016 IPR003787 Sulphur relay, DsrE/F-like protein vm_RS13780 91eeac56a9d1576ac73ddfc37c0889fe 118 Gene3D G3DSA:3.40.1260.10 2 118 4.6E-47 T 11-11-2016 IPR027396 DsrEFH-like vm_RS11525 4074e510e7f79c1f5c78710905d064c6 236 SUPERFAMILY SSF109755 10 225 1.15E-70 T 11-11-2016 vm_RS11525 4074e510e7f79c1f5c78710905d064c6 236 PIRSF PIRSF003107 4 223 4.2E-70 T 11-11-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 vm_RS11525 4074e510e7f79c1f5c78710905d064c6 236 Gene3D G3DSA:1.20.58.220 6 111 5.5E-38 T 11-11-2016 vm_RS11525 4074e510e7f79c1f5c78710905d064c6 236 Gene3D G3DSA:1.20.58.220 124 225 6.2E-30 T 11-11-2016 vm_RS11525 4074e510e7f79c1f5c78710905d064c6 236 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 10 219 1.3E-78 T 11-11-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 vm_RS11525 4074e510e7f79c1f5c78710905d064c6 236 Pfam PF01895 PhoU domain 128 210 1.9E-16 T 11-11-2016 IPR026022 PhoU domain vm_RS11525 4074e510e7f79c1f5c78710905d064c6 236 Pfam PF01895 PhoU domain 23 109 9.5E-23 T 11-11-2016 IPR026022 PhoU domain vm_RS14265 ed346d8249d09789edd75021348991ee 352 SUPERFAMILY SSF54631 180 315 1.71E-25 T 11-11-2016 vm_RS14265 ed346d8249d09789edd75021348991ee 352 Pfam PF01595 Domain of unknown function DUF21 9 176 1.7E-27 T 11-11-2016 IPR002550 Domain of unknown function DUF21 vm_RS14265 ed346d8249d09789edd75021348991ee 352 Gene3D G3DSA:3.10.580.10 180 315 2.0E-15 T 11-11-2016 vm_RS14265 ed346d8249d09789edd75021348991ee 352 Pfam PF00571 CBS domain 260 313 8.3E-6 T 11-11-2016 IPR000644 CBS domain vm_RS11285 933e9c8b2499ac8cb918506a54c2a14f 528 SMART SM00052 251 495 1.8E-100 T 11-11-2016 IPR001633 EAL domain vm_RS11285 933e9c8b2499ac8cb918506a54c2a14f 528 SUPERFAMILY SSF141868 258 500 2.48E-77 T 11-11-2016 IPR001633 EAL domain vm_RS11285 933e9c8b2499ac8cb918506a54c2a14f 528 Gene3D G3DSA:3.20.20.450 257 498 7.5E-83 T 11-11-2016 IPR001633 EAL domain vm_RS11285 933e9c8b2499ac8cb918506a54c2a14f 528 Pfam PF00563 EAL domain 258 490 2.8E-66 T 11-11-2016 IPR001633 EAL domain vm_RS11285 933e9c8b2499ac8cb918506a54c2a14f 528 Pfam PF12792 CSS motif domain associated with EAL 52 224 9.7E-17 T 11-11-2016 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain vm_RS05245 c65e518aeb928e9fd28a1977120efd57 310 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 266 292 - T 11-11-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981 vm_RS05245 c65e518aeb928e9fd28a1977120efd57 310 Pfam PF01148 Cytidylyltransferase family 42 307 1.5E-68 T 11-11-2016 vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 660 682 - T 11-11-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 11-11-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 3 460 3.9E-129 T 11-11-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 Gene3D G3DSA:3.30.360.10 636 791 5.1E-56 T 11-11-2016 vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 SUPERFAMILY SSF55347 614 797 2.62E-50 T 11-11-2016 vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 SUPERFAMILY SSF51735 463 636 5.51E-38 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 SUPERFAMILY SSF53633 1 298 1.85E-76 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 Gene3D G3DSA:3.40.50.720 466 635 7.3E-64 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 Pfam PF13840 ACT domain 393 456 1.5E-6 T 11-11-2016 IPR027795 GATS-like ACT domain vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 PIRSF PIRSF000727 1 817 0.0 T 11-11-2016 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+2.7.2.4+1.1.1.3|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4+1.1.1.3|KEGG: 00300+2.7.2.4+1.1.1.3|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 Pfam PF00696 Amino acid kinase family 2 284 1.6E-51 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 SUPERFAMILY SSF55021 303 381 7.85E-20 T 11-11-2016 vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 Gene3D G3DSA:3.40.1160.10 1 49 6.1E-68 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 Gene3D G3DSA:3.40.1160.10 111 299 6.1E-68 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 SUPERFAMILY SSF55021 383 476 8.5E-21 T 11-11-2016 vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 472 606 1.1E-26 T 11-11-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 Pfam PF00742 Homoserine dehydrogenase 614 810 6.3E-49 T 11-11-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 vm_RS03125 44b94f202c6a2d6b048e7880d1e12549 819 Pfam PF01842 ACT domain 324 380 2.2E-8 T 11-11-2016 IPR002912 ACT domain GO:0008152|GO:0016597 vm_RS13435 47898c2a9344835db810c2f712e3a60e 166 SUPERFAMILY SSF52972 2 165 5.17E-52 T 11-11-2016 IPR029001 Inosine triphosphate pyrophosphatase-like vm_RS13435 47898c2a9344835db810c2f712e3a60e 166 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 163 1.3E-45 T 11-11-2016 IPR003697 Maf-like protein GO:0005737 vm_RS13435 47898c2a9344835db810c2f712e3a60e 166 PIRSF PIRSF006305 1 166 6.0E-45 T 11-11-2016 IPR003697 Maf-like protein GO:0005737 vm_RS13435 47898c2a9344835db810c2f712e3a60e 166 Pfam PF02545 Maf-like protein 2 165 9.2E-50 T 11-11-2016 IPR003697 Maf-like protein GO:0005737 vm_RS13435 47898c2a9344835db810c2f712e3a60e 166 Gene3D G3DSA:3.90.950.10 1 166 2.2E-59 T 11-11-2016 IPR029001 Inosine triphosphate pyrophosphatase-like vm_RS13435 47898c2a9344835db810c2f712e3a60e 166 Hamap MF_00528 Septum formation protein Maf [maf]. 1 166 20.891 T 11-11-2016 IPR003697 Maf-like protein GO:0005737 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 Hamap MF_01201 Alanine racemase. 1 357 35.595 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 SMART SM01005 233 357 4.0E-64 T 11-11-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 PRINTS PR00992 Alanine racemase signature 249 264 1.4E-71 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 PRINTS PR00992 Alanine racemase signature 26 42 1.4E-71 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 PRINTS PR00992 Alanine racemase signature 287 304 1.4E-71 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 PRINTS PR00992 Alanine racemase signature 339 352 1.4E-71 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 PRINTS PR00992 Alanine racemase signature 60 78 1.4E-71 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 PRINTS PR00992 Alanine racemase signature 192 219 1.4E-71 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 PRINTS PR00992 Alanine racemase signature 155 166 1.4E-71 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 PRINTS PR00992 Alanine racemase signature 120 132 1.4E-71 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 PRINTS PR00992 Alanine racemase signature 266 281 1.4E-71 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 31 41 - T 11-11-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 Pfam PF00842 Alanine racemase, C-terminal domain 233 356 7.7E-40 T 11-11-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 Gene3D G3DSA:3.20.20.10 10 212 3.2E-74 T 11-11-2016 IPR029066 PLP-binding barrel vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 Pfam PF01168 Alanine racemase, N-terminal domain 8 219 5.8E-72 T 11-11-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 Gene3D G3DSA:2.40.37.10 213 357 1.9E-55 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 SUPERFAMILY SSF51419 8 234 3.4E-71 T 11-11-2016 IPR029066 PLP-binding barrel vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 TIGRFAM TIGR00492 alr: alanine racemase 3 356 2.3E-130 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13710 6c4fa7d3d647cd518579b5b50bf8c7f5 361 SUPERFAMILY SSF50621 227 357 2.48E-46 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 vm_RS07990 859700299678f86e89a5ac12a3f1fe5d 339 SUPERFAMILY SSF53850 43 263 8.02E-33 T 11-11-2016 vm_RS07990 859700299678f86e89a5ac12a3f1fe5d 339 Gene3D G3DSA:3.40.190.10 123 205 3.8E-10 T 11-11-2016 vm_RS07990 859700299678f86e89a5ac12a3f1fe5d 339 Pfam PF09084 NMT1/THI5 like 53 262 1.5E-23 T 11-11-2016 IPR015168 SsuA/THI5-like vm_RS14410 fa46ccc322e10740a360ba722f0a1683 126 TIGRFAM TIGR01681 HAD-SF-IIIC: HAD phosphatase, family IIIC 4 108 1.9E-9 T 11-11-2016 IPR010033 HAD-superfamily phosphatase, subfamily IIIC vm_RS14410 fa46ccc322e10740a360ba722f0a1683 126 Pfam PF08282 haloacid dehalogenase-like hydrolase 4 69 5.9E-6 T 11-11-2016 IPR023214 HAD-like domain vm_RS14410 fa46ccc322e10740a360ba722f0a1683 126 SUPERFAMILY SSF56784 1 108 1.54E-26 T 11-11-2016 IPR023214 HAD-like domain vm_RS14410 fa46ccc322e10740a360ba722f0a1683 126 Gene3D G3DSA:3.40.50.1000 1 123 1.3E-44 T 11-11-2016 IPR023214 HAD-like domain vm_RS14410 fa46ccc322e10740a360ba722f0a1683 126 TIGRFAM TIGR01689 EcbF-BcbF: capsule biosynthesis phosphatase 1 126 1.0E-68 T 11-11-2016 IPR010039 Capsule biosynthesis phosphatase vm_RS11830 83f404bc23f7758bc9ad07b06554c1fa 221 SUPERFAMILY SSF52980 3 220 3.54E-82 T 11-11-2016 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 vm_RS11830 83f404bc23f7758bc9ad07b06554c1fa 221 Gene3D G3DSA:3.40.600.10 4 220 7.5E-82 T 11-11-2016 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 vm_RS11830 83f404bc23f7758bc9ad07b06554c1fa 221 TIGRFAM TIGR02248 mutH_TIGR: DNA mismatch repair endonuclease MutH 5 219 1.7E-101 T 11-11-2016 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 vm_RS11830 83f404bc23f7758bc9ad07b06554c1fa 221 SMART SM00927 53 151 5.2E-65 T 11-11-2016 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 vm_RS11830 83f404bc23f7758bc9ad07b06554c1fa 221 Hamap MF_00759 DNA mismatch repair protein MutH [mutH]. 1 221 149.713 T 11-11-2016 IPR004230 DNA mismatch repair protein MutH GO:0003677|GO:0004519|GO:0006304 vm_RS11830 83f404bc23f7758bc9ad07b06554c1fa 221 Pfam PF02976 DNA mismatch repair enzyme MutH 53 151 1.4E-33 T 11-11-2016 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II GO:0003677|GO:0004519 vm_RS02010 72999f063f8685aa14f3587c96a7027c 105 ProSitePatterns PS01108 Ribosomal protein L24 signature. 8 25 - T 11-11-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS02010 72999f063f8685aa14f3587c96a7027c 105 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 39 102 3.4E-23 T 11-11-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02010 72999f063f8685aa14f3587c96a7027c 105 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 3 97 19.983 T 11-11-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02010 72999f063f8685aa14f3587c96a7027c 105 Gene3D G3DSA:2.30.30.30 3 92 3.1E-22 T 11-11-2016 IPR014722 Ribosomal protein L2 domain 2 vm_RS02010 72999f063f8685aa14f3587c96a7027c 105 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 3 103 8.1E-40 T 11-11-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02010 72999f063f8685aa14f3587c96a7027c 105 SUPERFAMILY SSF50104 4 102 1.02E-33 T 11-11-2016 IPR008991 Translation protein SH3-like domain vm_RS02010 72999f063f8685aa14f3587c96a7027c 105 SMART SM00739 4 31 5.3E-4 T 11-11-2016 IPR005824 KOW vm_RS02010 72999f063f8685aa14f3587c96a7027c 105 Pfam PF00467 KOW motif 9 37 7.7E-6 T 11-11-2016 IPR005824 KOW vm_RS11275 9dc178e46c01c59231409ee366dcbbd3 227 Pfam PF00072 Response regulator receiver domain 7 117 3.3E-21 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS11275 9dc178e46c01c59231409ee366dcbbd3 227 Pfam PF12431 Transcriptional regulator 134 162 8.6E-11 T 11-11-2016 IPR028141 Transcriptional regulator vm_RS11275 9dc178e46c01c59231409ee366dcbbd3 227 SMART SM00448 5 118 8.3E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS11275 9dc178e46c01c59231409ee366dcbbd3 227 SUPERFAMILY SSF52172 5 146 1.85E-30 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS11275 9dc178e46c01c59231409ee366dcbbd3 227 Gene3D G3DSA:3.40.50.2300 4 128 1.8E-26 T 11-11-2016 vm_RS11275 9dc178e46c01c59231409ee366dcbbd3 227 PIRSF PIRSF006171 3 227 4.8E-80 T 11-11-2016 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 vm_RS12160 9914ec35a00e9a345a2ee43ffc9e67e0 409 SUPERFAMILY SSF111352 12 383 8.24E-105 T 11-11-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 vm_RS12160 9914ec35a00e9a345a2ee43ffc9e67e0 409 ProSitePatterns PS01219 Ammonium transporters signature. 163 188 - T 11-11-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 vm_RS12160 9914ec35a00e9a345a2ee43ffc9e67e0 409 TIGRFAM TIGR03644 marine_trans_1: probable ammonium transporter, marine subtype 12 405 2.2E-204 T 11-11-2016 IPR019879 Ammonium transporter, marine subtype vm_RS12160 9914ec35a00e9a345a2ee43ffc9e67e0 409 Gene3D G3DSA:1.10.3430.10 27 398 5.5E-108 T 11-11-2016 IPR029020 Ammonium/urea transporter vm_RS12160 9914ec35a00e9a345a2ee43ffc9e67e0 409 Pfam PF00909 Ammonium Transporter Family 18 402 6.5E-101 T 11-11-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 vm_RS01500 9c8985c2d3234ac34047425f549e78ce 205 Gene3D G3DSA:1.10.287.990 20 85 3.0E-21 T 11-11-2016 vm_RS01500 9c8985c2d3234ac34047425f549e78ce 205 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 85 3.1E-25 T 11-11-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS01500 9c8985c2d3234ac34047425f549e78ce 205 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 92 195 4.1E-40 T 11-11-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS01500 9c8985c2d3234ac34047425f549e78ce 205 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 163 170 - T 11-11-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS01500 9c8985c2d3234ac34047425f549e78ce 205 PIRSF PIRSF000349 1 205 1.3E-79 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS01500 9c8985c2d3234ac34047425f549e78ce 205 SUPERFAMILY SSF46609 1 86 2.09E-29 T 11-11-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS01500 9c8985c2d3234ac34047425f549e78ce 205 SUPERFAMILY SSF54719 87 201 5.11E-44 T 11-11-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS01500 9c8985c2d3234ac34047425f549e78ce 205 PRINTS PR01703 Manganese superoxide dismutase signature 121 129 1.5E-21 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS01500 9c8985c2d3234ac34047425f549e78ce 205 PRINTS PR01703 Manganese superoxide dismutase signature 68 81 1.5E-21 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS01500 9c8985c2d3234ac34047425f549e78ce 205 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.5E-21 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS01500 9c8985c2d3234ac34047425f549e78ce 205 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.5E-21 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS01500 9c8985c2d3234ac34047425f549e78ce 205 PRINTS PR01703 Manganese superoxide dismutase signature 161 173 1.5E-21 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS12375 c1ad0b3b751ffbaa6887ebba8c3656a5 424 SMART SM01091 342 420 1.1E-22 T 11-11-2016 IPR005170 Transporter-associated domain vm_RS12375 c1ad0b3b751ffbaa6887ebba8c3656a5 424 SUPERFAMILY SSF54631 192 329 2.02E-23 T 11-11-2016 vm_RS12375 c1ad0b3b751ffbaa6887ebba8c3656a5 424 Pfam PF03471 Transporter associated domain 344 418 7.3E-17 T 11-11-2016 IPR005170 Transporter-associated domain vm_RS12375 c1ad0b3b751ffbaa6887ebba8c3656a5 424 SUPERFAMILY SSF56176 340 419 8.45E-20 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 vm_RS12375 c1ad0b3b751ffbaa6887ebba8c3656a5 424 Pfam PF00571 CBS domain 278 326 6.0E-4 T 11-11-2016 IPR000644 CBS domain vm_RS12375 c1ad0b3b751ffbaa6887ebba8c3656a5 424 Gene3D G3DSA:3.30.465.10 340 418 1.5E-22 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 vm_RS12375 c1ad0b3b751ffbaa6887ebba8c3656a5 424 Pfam PF01595 Domain of unknown function DUF21 13 181 1.8E-49 T 11-11-2016 IPR002550 Domain of unknown function DUF21 vm_RS12375 c1ad0b3b751ffbaa6887ebba8c3656a5 424 Gene3D G3DSA:3.10.580.10 192 330 7.6E-12 T 11-11-2016 vm_RS09295 7dc9b60b37f2c712f50a3ba4dd7342b1 350 Pfam PF04055 Radical SAM superfamily 50 200 4.6E-15 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS09295 7dc9b60b37f2c712f50a3ba4dd7342b1 350 PIRSF PIRSF001619 1 318 3.0E-137 T 11-11-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 vm_RS09295 7dc9b60b37f2c712f50a3ba4dd7342b1 350 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 220 310 6.4E-20 T 11-11-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 vm_RS09295 7dc9b60b37f2c712f50a3ba4dd7342b1 350 SMART SM00876 220 312 2.3E-46 T 11-11-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 vm_RS09295 7dc9b60b37f2c712f50a3ba4dd7342b1 350 SMART SM00729 43 255 3.6E-38 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 vm_RS09295 7dc9b60b37f2c712f50a3ba4dd7342b1 350 SUPERFAMILY SSF102114 5 310 2.75E-92 T 11-11-2016 vm_RS09295 7dc9b60b37f2c712f50a3ba4dd7342b1 350 TIGRFAM TIGR00433 bioB: biotin synthase 15 310 1.7E-125 T 11-11-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 vm_RS09295 7dc9b60b37f2c712f50a3ba4dd7342b1 350 Hamap MF_01694 Biotin synthase [bioB]. 5 313 41.864 T 11-11-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380 vm_RS09295 7dc9b60b37f2c712f50a3ba4dd7342b1 350 Gene3D G3DSA:3.20.20.70 5 312 6.3E-104 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 Gene3D G3DSA:1.10.10.60 384 438 5.4E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 Gene3D G3DSA:3.40.50.300 144 311 1.8E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 SUPERFAMILY SSF52540 146 378 3.39E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 Pfam PF02954 Bacterial regulatory protein, Fis family 396 435 8.6E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 SUPERFAMILY SSF52172 26 190 2.15E-6 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 SUPERFAMILY SSF46689 350 438 1.59E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 Gene3D G3DSA:1.10.8.60 312 383 5.7E-23 T 11-11-2016 vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 SMART SM00382 166 303 4.3E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 352 361 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 402 419 5.6E-5 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 419 439 5.6E-5 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS11850 e55a183995f70b2e6f5222fe9dfae3d5 444 Pfam PF00158 Sigma-54 interaction domain 146 305 9.1E-40 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 vm_RS10385 cd94b5d999fca3bdfe52cf2091aa95c4 263 Pfam PF05036 Sporulation related domain 188 256 4.7E-8 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 vm_RS10385 cd94b5d999fca3bdfe52cf2091aa95c4 263 Pfam PF03330 Lytic transglycolase 78 168 3.1E-29 T 11-11-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain vm_RS10385 cd94b5d999fca3bdfe52cf2091aa95c4 263 SUPERFAMILY SSF50685 81 169 2.13E-11 T 11-11-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain vm_RS10385 cd94b5d999fca3bdfe52cf2091aa95c4 263 Gene3D G3DSA:3.30.70.1070 182 257 1.1E-8 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 vm_RS10385 cd94b5d999fca3bdfe52cf2091aa95c4 263 SUPERFAMILY SSF110997 187 256 9.29E-12 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 vm_RS10385 cd94b5d999fca3bdfe52cf2091aa95c4 263 Gene3D G3DSA:2.40.40.10 118 170 3.4E-6 T 11-11-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain vm_RS10385 cd94b5d999fca3bdfe52cf2091aa95c4 263 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 81 248 1.0E-47 T 11-11-2016 IPR012997 Rare lipoprotein A vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 SUPERFAMILY SSF51735 1 151 6.47E-36 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 Pfam PF02254 TrkA-N domain 235 350 1.4E-24 T 11-11-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 Pfam PF02254 TrkA-N domain 3 115 4.9E-29 T 11-11-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 SUPERFAMILY SSF116726 136 223 1.26E-9 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 SUPERFAMILY SSF51735 232 376 1.72E-32 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 Gene3D G3DSA:3.30.70.1450 390 436 6.3E-4 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 SUPERFAMILY SSF116726 381 437 6.02E-7 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 3.9E-34 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 3.9E-34 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 3.9E-34 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 3.9E-34 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 3.9E-34 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 Gene3D G3DSA:3.40.50.720 1 152 4.4E-49 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 Gene3D G3DSA:3.40.50.720 233 376 1.0E-37 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 Pfam PF02080 TrkA-C domain 156 225 4.6E-11 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS00165 b55b9ba0c29555f7774a0b89571e2e1e 458 Pfam PF02080 TrkA-C domain 390 449 3.9E-9 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 Gene3D G3DSA:3.30.2060.10 159 231 1.7E-12 T 11-11-2016 vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 671 42.897 T 11-11-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 SUPERFAMILY SSF52540 3 416 1.84E-136 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 Gene3D G3DSA:3.40.50.300 420 581 1.0E-38 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 Gene3D G3DSA:4.10.860.10 632 673 2.2E-18 T 11-11-2016 IPR001943 UVR domain GO:0005515 vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 Pfam PF04851 Type III restriction enzyme, res subunit 16 128 1.3E-8 T 11-11-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 SMART SM00487 9 426 4.4E-25 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 SUPERFAMILY SSF52540 460 586 2.13E-35 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 SUPERFAMILY SSF52540 37 82 2.13E-35 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 SUPERFAMILY SSF46600 626 672 5.36E-11 T 11-11-2016 IPR001943 UVR domain GO:0005515 vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 Pfam PF12344 Ultra-violet resistance protein B 553 594 7.0E-21 T 11-11-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 669 0.0 T 11-11-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 Pfam PF02151 UvrB/uvrC motif 636 671 5.5E-8 T 11-11-2016 IPR001943 UVR domain GO:0005515 vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 Gene3D G3DSA:3.40.50.300 279 339 4.1E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 Gene3D G3DSA:3.40.50.300 5 89 4.1E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 Gene3D G3DSA:3.40.50.300 389 409 4.1E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 Pfam PF00271 Helicase conserved C-terminal domain 443 546 1.5E-17 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS10000 6d46a208bf51f3dc6b6c92749e396c96 676 SMART SM00490 461 547 8.7E-19 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS10165 88f2c21cc09eebd4b58873c86d77892f 524 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 451 468 - T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 vm_RS10165 88f2c21cc09eebd4b58873c86d77892f 524 Pfam PF02378 Phosphotransferase system, EIIC 11 353 1.1E-62 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 vm_RS10165 88f2c21cc09eebd4b58873c86d77892f 524 TIGRFAM TIGR01998 PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component 3 509 4.6E-215 T 11-11-2016 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component GO:0008982|GO:0009401|GO:0015572|GO:0016021|GO:0019866 vm_RS10165 88f2c21cc09eebd4b58873c86d77892f 524 Gene3D G3DSA:3.30.1360.60 436 512 2.3E-25 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS10165 88f2c21cc09eebd4b58873c86d77892f 524 SUPERFAMILY SSF55604 438 511 1.44E-19 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS10165 88f2c21cc09eebd4b58873c86d77892f 524 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 411 498 2.0E-21 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS10165 88f2c21cc09eebd4b58873c86d77892f 524 Pfam PF00367 phosphotransferase system, EIIB 440 473 3.1E-13 T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 vm_RS03635 edd72d4f4299727f50f0256eaed6d18d 402 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 4 132 7.0E-47 T 11-11-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 vm_RS03635 edd72d4f4299727f50f0256eaed6d18d 402 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 396 1.9E-162 T 11-11-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 vm_RS03635 edd72d4f4299727f50f0256eaed6d18d 402 PIRSF PIRSF006205 1 402 7.0E-152 T 11-11-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 vm_RS03635 edd72d4f4299727f50f0256eaed6d18d 402 Pfam PF13288 DXP reductoisomerase C-terminal domain 271 391 4.5E-38 T 11-11-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 vm_RS03635 edd72d4f4299727f50f0256eaed6d18d 402 Gene3D G3DSA:1.10.1740.10 313 399 2.4E-27 T 11-11-2016 vm_RS03635 edd72d4f4299727f50f0256eaed6d18d 402 Gene3D G3DSA:3.40.50.720 1 150 1.1E-53 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03635 edd72d4f4299727f50f0256eaed6d18d 402 SUPERFAMILY SSF51735 2 150 5.87E-48 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03635 edd72d4f4299727f50f0256eaed6d18d 402 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 239 4.8E-36 T 11-11-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 vm_RS03635 edd72d4f4299727f50f0256eaed6d18d 402 SUPERFAMILY SSF55347 126 274 5.89E-62 T 11-11-2016 vm_RS03635 edd72d4f4299727f50f0256eaed6d18d 402 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 4 396 46.15 T 11-11-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 vm_RS03635 edd72d4f4299727f50f0256eaed6d18d 402 SUPERFAMILY SSF69055 302 399 1.28E-28 T 11-11-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560 vm_RS05090 8713bf09dfe77087ab780c95cd1a838a 435 SUPERFAMILY SSF56322 30 425 3.4E-95 T 11-11-2016 IPR005801 ADC synthase GO:0009058 vm_RS05090 8713bf09dfe77087ab780c95cd1a838a 435 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 85 424 2.1E-103 T 11-11-2016 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 vm_RS05090 8713bf09dfe77087ab780c95cd1a838a 435 Pfam PF00425 chorismate binding enzyme 166 417 4.4E-69 T 11-11-2016 IPR015890 Chorismate-utilising enzyme, C-terminal vm_RS05090 8713bf09dfe77087ab780c95cd1a838a 435 Gene3D G3DSA:3.60.120.10 15 425 4.8E-84 T 11-11-2016 IPR005801 ADC synthase GO:0009058 vm_RS05090 8713bf09dfe77087ab780c95cd1a838a 435 Hamap MF_01935 Isochorismate synthase MenF [menF]. 4 427 38.424 T 11-11-2016 vm_RS11920 3e8a1f2fec78f33a814231ef7983aad7 292 Pfam PF01136 Peptidase family U32 82 237 3.2E-13 T 11-11-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 vm_RS05860 66d3c281e45f401caf883ef97b80b479 101 TIGRFAM TIGR02112 cyd_oper_ybgE: cyd operon protein YbgE 8 100 1.3E-37 T 11-11-2016 IPR011846 Cyd operon protein YbgE vm_RS05860 66d3c281e45f401caf883ef97b80b479 101 Pfam PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) 21 96 2.5E-29 T 11-11-2016 IPR011846 Cyd operon protein YbgE vm_RS08290 24977623c0470fe81fb5ca172a2177d0 338 Pfam PF05128 Domain of unknown function (DUF697) 174 332 4.3E-49 T 11-11-2016 IPR021147 Protein of unknown function DUF697 vm_RS08290 24977623c0470fe81fb5ca172a2177d0 338 TIGRFAM TIGR01620 hyp_HI0043: TIGR01620 family protein 61 332 8.3E-72 T 11-11-2016 IPR006507 Uncharacterised protein family UPF0283 vm_RS00720 9aa4c2db15a092879cd91b6add484e30 369 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 11 368 7.1E-183 T 11-11-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 vm_RS00720 9aa4c2db15a092879cd91b6add484e30 369 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 350 360 - T 11-11-2016 IPR030391 RNA methyltransferase TrmA, conserved site vm_RS00720 9aa4c2db15a092879cd91b6add484e30 369 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 11 368 7.6E-184 T 11-11-2016 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 vm_RS00720 9aa4c2db15a092879cd91b6add484e30 369 Gene3D G3DSA:3.40.50.150 155 367 1.5E-44 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS00720 9aa4c2db15a092879cd91b6add484e30 369 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 4 368 44.067 T 11-11-2016 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 vm_RS00720 9aa4c2db15a092879cd91b6add484e30 369 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 301 330 - T 11-11-2016 IPR030390 RNA methyltransferase TrmA, active site vm_RS00720 9aa4c2db15a092879cd91b6add484e30 369 SUPERFAMILY SSF53335 11 367 9.01E-55 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS12400 a2531901c3eb87be841de97a0cb3b1f7 316 SUPERFAMILY SSF50129 4 154 7.61E-36 T 11-11-2016 IPR011032 GroES-like vm_RS12400 a2531901c3eb87be841de97a0cb3b1f7 316 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 92 7.1E-7 T 11-11-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 vm_RS12400 a2531901c3eb87be841de97a0cb3b1f7 316 Gene3D G3DSA:3.90.180.10 2 153 1.7E-43 T 11-11-2016 IPR011032 GroES-like vm_RS12400 a2531901c3eb87be841de97a0cb3b1f7 316 Pfam PF13602 Zinc-binding dehydrogenase 191 312 3.2E-19 T 11-11-2016 vm_RS12400 a2531901c3eb87be841de97a0cb3b1f7 316 SUPERFAMILY SSF51735 122 257 9.17E-30 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS12400 a2531901c3eb87be841de97a0cb3b1f7 316 Gene3D G3DSA:3.40.50.720 154 238 3.8E-19 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS12400 a2531901c3eb87be841de97a0cb3b1f7 316 SMART SM00829 12 312 1.3E-14 T 11-11-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 vm_RS13305 2b4d62cda3bff0db3d43d867be191ab7 421 SUPERFAMILY SSF51419 48 281 5.23E-29 T 11-11-2016 IPR029066 PLP-binding barrel vm_RS13305 2b4d62cda3bff0db3d43d867be191ab7 421 SMART SM01119 311 408 5.7E-27 T 11-11-2016 IPR026956 D-serine dehydratase-like domain vm_RS13305 2b4d62cda3bff0db3d43d867be191ab7 421 Gene3D G3DSA:3.20.20.10 52 206 4.5E-11 T 11-11-2016 IPR029066 PLP-binding barrel vm_RS13305 2b4d62cda3bff0db3d43d867be191ab7 421 Pfam PF01168 Alanine racemase, N-terminal domain 48 256 7.0E-16 T 11-11-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13305 2b4d62cda3bff0db3d43d867be191ab7 421 Pfam PF14031 Putative serine dehydratase domain 311 406 2.5E-13 T 11-11-2016 IPR026956 D-serine dehydratase-like domain vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 498 515 - T 11-11-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 266 279 - T 11-11-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 SUPERFAMILY SSF53697 6 548 7.23E-225 T 11-11-2016 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 Pfam PF00342 Phosphoglucose isomerase 53 542 1.7E-253 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 Gene3D G3DSA:3.40.50.10490 100 291 1.4E-89 T 11-11-2016 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 Gene3D G3DSA:1.10.1390.10 508 549 1.2E-22 T 11-11-2016 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 Gene3D G3DSA:3.40.50.10490 294 507 1.8E-149 T 11-11-2016 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 Gene3D G3DSA:3.40.50.10490 9 99 1.8E-149 T 11-11-2016 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 151 170 8.5E-57 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 339 360 8.5E-57 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 262 280 8.5E-57 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 498 511 8.5E-57 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 466 484 8.5E-57 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 PRINTS PR00662 Glucose-6-phosphate isomerase signature 484 498 8.5E-57 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS13700 7d0639e70b27c44dfc85da40241d1168 550 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 47 525 42.678 T 11-11-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS08350 7e70c72605b323006962d5753826b38d 205 SUPERFAMILY SSF51161 27 184 1.52E-42 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS08350 7e70c72605b323006962d5753826b38d 205 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 135 163 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 vm_RS08350 7e70c72605b323006962d5753826b38d 205 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 127 161 5.6E-10 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS08350 7e70c72605b323006962d5753826b38d 205 Gene3D G3DSA:2.160.10.10 18 183 4.3E-46 T 11-11-2016 vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 ProSitePatterns PS01275 Elongation factor P signature. 153 172 - T 11-11-2016 IPR013852 Translation elongation factor P/YeiP, conserved site vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 70 124 3.8E-14 T 11-11-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 SUPERFAMILY SSF50249 67 129 3.13E-12 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 Hamap MF_00646 Elongation factor P-like protein [yeiP]. 2 188 46.893 T 11-11-2016 IPR011897 Translation elongation factor P-like, YeiP vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 Gene3D G3DSA:2.40.50.140 67 129 6.3E-15 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 Pfam PF09285 Elongation factor P, C-terminal 132 187 4.0E-19 T 11-11-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 SUPERFAMILY SSF50249 132 188 4.63E-15 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 PIRSF PIRSF005901 1 188 1.3E-60 T 11-11-2016 IPR020599 Translation elongation factor P/YeiP vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 3 61 3.5E-15 T 11-11-2016 IPR013185 Translation elongation factor, KOW-like vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 SMART SM00841 132 187 4.0E-26 T 11-11-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 TIGRFAM TIGR02178 yeiP: elongation factor P-like protein YeiP 3 188 4.6E-103 T 11-11-2016 IPR011897 Translation elongation factor P-like, YeiP vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 SUPERFAMILY SSF50104 1 65 2.11E-10 T 11-11-2016 IPR008991 Translation protein SH3-like domain vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 Gene3D G3DSA:2.30.30.30 1 65 1.7E-12 T 11-11-2016 IPR014722 Ribosomal protein L2 domain 2 vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 SMART SM01185 69 124 1.1E-15 T 11-11-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 vm_RS08810 729a4df02465cd035dc8b9ee19eed603 188 Gene3D G3DSA:2.40.50.140 131 188 4.0E-22 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 423 9.6E-187 T 11-11-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 Gene3D G3DSA:3.90.600.10 330 423 5.9E-36 T 11-11-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 Gene3D G3DSA:3.30.1490.20 121 190 6.5E-33 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 103 296 1.5E-82 T 11-11-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 SMART SM01209 103 296 3.1E-140 T 11-11-2016 vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 332 421 8.2E-30 T 11-11-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 SMART SM01210 330 423 4.8E-56 T 11-11-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 SUPERFAMILY SSF52440 1 103 1.38E-37 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 43.936 T 11-11-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 290 297 - T 11-11-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 SUPERFAMILY SSF56059 104 323 1.22E-68 T 11-11-2016 vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 SUPERFAMILY SSF51246 329 424 7.32E-34 T 11-11-2016 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 Gene3D G3DSA:3.40.50.20 2 95 4.6E-39 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 102 5.5E-36 T 11-11-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 vm_RS14250 0e2cafbd2d53b9be96f0f9ad53490ec6 429 Gene3D G3DSA:3.30.470.20 191 328 3.5E-65 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS11500 a4be4922c04c1c81a1f40f4aed495bed 545 Pfam PF01274 Malate synthase 23 544 6.5E-195 T 11-11-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 vm_RS11500 a4be4922c04c1c81a1f40f4aed495bed 545 ProSitePatterns PS00510 Malate synthase signature. 278 293 - T 11-11-2016 IPR019830 Malate synthase, conserved site GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 vm_RS11500 a4be4922c04c1c81a1f40f4aed495bed 545 PIRSF PIRSF001363 13 545 1.6E-251 T 11-11-2016 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 vm_RS11500 a4be4922c04c1c81a1f40f4aed495bed 545 Gene3D G3DSA:3.20.20.360 84 426 4.4E-115 T 11-11-2016 vm_RS11500 a4be4922c04c1c81a1f40f4aed495bed 545 SUPERFAMILY SSF51645 19 544 1.83E-186 T 11-11-2016 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 vm_RS11500 a4be4922c04c1c81a1f40f4aed495bed 545 Gene3D G3DSA:1.20.1220.12 427 538 3.3E-36 T 11-11-2016 vm_RS11500 a4be4922c04c1c81a1f40f4aed495bed 545 TIGRFAM TIGR01344 malate_syn_A: malate synthase A 35 544 2.0E-271 T 11-11-2016 IPR006252 Malate synthase A GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295 vm_RS02905 614b66525b71dfa72089350215356429 634 SUPERFAMILY SSF55816 339 548 3.92E-25 T 11-11-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS02905 614b66525b71dfa72089350215356429 634 Pfam PF00149 Calcineurin-like phosphoesterase 29 247 5.7E-14 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 vm_RS02905 614b66525b71dfa72089350215356429 634 Pfam PF02872 5'-nucleotidase, C-terminal domain 342 492 9.6E-22 T 11-11-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS02905 614b66525b71dfa72089350215356429 634 PRINTS PR01607 Apyrase family signature 230 253 3.9E-13 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS02905 614b66525b71dfa72089350215356429 634 PRINTS PR01607 Apyrase family signature 257 277 3.9E-13 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS02905 614b66525b71dfa72089350215356429 634 PRINTS PR01607 Apyrase family signature 203 220 3.9E-13 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS02905 614b66525b71dfa72089350215356429 634 PRINTS PR01607 Apyrase family signature 26 44 3.9E-13 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS02905 614b66525b71dfa72089350215356429 634 Gene3D G3DSA:3.60.21.10 17 326 9.8E-84 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS02905 614b66525b71dfa72089350215356429 634 ProSitePatterns PS00786 5'-nucleotidase signature 2. 107 118 - T 11-11-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS02905 614b66525b71dfa72089350215356429 634 Gene3D G3DSA:3.90.780.10 341 549 3.8E-22 T 11-11-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS02905 614b66525b71dfa72089350215356429 634 SUPERFAMILY SSF56300 19 327 7.93E-77 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS12170 51cca746ed368ca6c2d640317ea53139 123 Hamap MF_01053 UPF0231 protein YacL [yacL]. 1 122 30.658 T 11-11-2016 IPR008249 Uncharacterised protein family UPF0231 vm_RS12170 51cca746ed368ca6c2d640317ea53139 123 ProDom PD020773 UPF0231 YACL UNCHARACTERISED UCP006287 VC0605 UNCHARACTERIZED 3'REGION VV2750 BCR OXIDASE 1 120 3.0E-54 T 11-11-2016 IPR008249 Uncharacterised protein family UPF0231 vm_RS12170 51cca746ed368ca6c2d640317ea53139 123 Pfam PF06062 Uncharacterised protein family (UPF0231) 1 120 7.4E-42 T 11-11-2016 IPR008249 Uncharacterised protein family UPF0231 vm_RS12170 51cca746ed368ca6c2d640317ea53139 123 PIRSF PIRSF006287 1 123 1.7E-48 T 11-11-2016 IPR008249 Uncharacterised protein family UPF0231 vm_RS06965 23815d5e5cf3a56d1a5d6b2ceeb4d061 352 Gene3D G3DSA:3.30.70.270 180 338 5.0E-47 T 11-11-2016 vm_RS06965 23815d5e5cf3a56d1a5d6b2ceeb4d061 352 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 177 334 1.7E-40 T 11-11-2016 IPR000160 GGDEF domain vm_RS06965 23815d5e5cf3a56d1a5d6b2ceeb4d061 352 SMART SM00267 167 335 3.7E-55 T 11-11-2016 IPR000160 GGDEF domain vm_RS06965 23815d5e5cf3a56d1a5d6b2ceeb4d061 352 Pfam PF00990 Diguanylate cyclase, GGDEF domain 178 331 3.3E-37 T 11-11-2016 IPR000160 GGDEF domain vm_RS06965 23815d5e5cf3a56d1a5d6b2ceeb4d061 352 SUPERFAMILY SSF55073 183 336 6.43E-41 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS12215 60b2f8c1402f344847801774bac9d4e2 167 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 134 2.9E-38 T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS12215 60b2f8c1402f344847801774bac9d4e2 167 SUPERFAMILY SSF55083 1 159 2.09E-55 T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS12215 60b2f8c1402f344847801774bac9d4e2 167 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 89 100 - T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS12215 60b2f8c1402f344847801774bac9d4e2 167 Gene3D G3DSA:3.30.70.560 4 153 9.8E-59 T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS12215 60b2f8c1402f344847801774bac9d4e2 167 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 134 9.0E-47 T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS06210 017554b93eadfd56ed3b4a201cb09cad 410 SUPERFAMILY SSF53187 324 405 1.02E-62 T 11-11-2016 vm_RS06210 017554b93eadfd56ed3b4a201cb09cad 410 SUPERFAMILY SSF53187 2 212 1.02E-62 T 11-11-2016 vm_RS06210 017554b93eadfd56ed3b4a201cb09cad 410 TIGRFAM TIGR01882 peptidase-T: peptidase T 2 409 1.9E-108 T 11-11-2016 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 vm_RS06210 017554b93eadfd56ed3b4a201cb09cad 410 Gene3D G3DSA:3.30.70.360 212 320 1.1E-34 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain vm_RS06210 017554b93eadfd56ed3b4a201cb09cad 410 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 139 178 - T 11-11-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 vm_RS06210 017554b93eadfd56ed3b4a201cb09cad 410 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 75 84 - T 11-11-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 vm_RS06210 017554b93eadfd56ed3b4a201cb09cad 410 PIRSF PIRSF037215 1 410 4.0E-145 T 11-11-2016 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 vm_RS06210 017554b93eadfd56ed3b4a201cb09cad 410 SUPERFAMILY SSF55031 211 316 1.27E-30 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain vm_RS06210 017554b93eadfd56ed3b4a201cb09cad 410 Pfam PF01546 Peptidase family M20/M25/M40 140 404 1.4E-13 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 vm_RS06210 017554b93eadfd56ed3b4a201cb09cad 410 Gene3D G3DSA:3.40.630.10 324 408 5.9E-93 T 11-11-2016 vm_RS06210 017554b93eadfd56ed3b4a201cb09cad 410 Gene3D G3DSA:3.40.630.10 1 211 5.9E-93 T 11-11-2016 vm_RS01815 90f4b1436b7127e968e5054878fb2041 226 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 7 220 7.7E-62 T 11-11-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 vm_RS01815 90f4b1436b7127e968e5054878fb2041 226 Gene3D G3DSA:3.40.50.1000 83 222 5.4E-44 T 11-11-2016 IPR023214 HAD-like domain vm_RS01815 90f4b1436b7127e968e5054878fb2041 226 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 86 190 6.6E-14 T 11-11-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 vm_RS01815 90f4b1436b7127e968e5054878fb2041 226 Gene3D G3DSA:1.10.150.240 19 82 2.6E-23 T 11-11-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 vm_RS01815 90f4b1436b7127e968e5054878fb2041 226 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 70 192 3.5E-11 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 vm_RS01815 90f4b1436b7127e968e5054878fb2041 226 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 4 223 35.77 T 11-11-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181 vm_RS01815 90f4b1436b7127e968e5054878fb2041 226 SUPERFAMILY SSF56784 3 222 4.6E-60 T 11-11-2016 IPR023214 HAD-like domain vm_RS01815 90f4b1436b7127e968e5054878fb2041 226 Pfam PF13419 Haloacid dehalogenase-like hydrolase 7 191 3.6E-38 T 11-11-2016 IPR023214 HAD-like domain vm_RS01815 90f4b1436b7127e968e5054878fb2041 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 5.3E-9 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 vm_RS01815 90f4b1436b7127e968e5054878fb2041 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 5.3E-9 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 vm_RS01815 90f4b1436b7127e968e5054878fb2041 226 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 5.3E-9 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 vm_RS01815 90f4b1436b7127e968e5054878fb2041 226 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 108 187 2.0E-9 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 vm_RS01510 1f6dec325341b003dac8b43f86cdd157 228 Pfam PF00072 Response regulator receiver domain 4 112 4.4E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS01510 1f6dec325341b003dac8b43f86cdd157 228 Gene3D G3DSA:3.40.50.2300 2 119 1.5E-38 T 11-11-2016 vm_RS01510 1f6dec325341b003dac8b43f86cdd157 228 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 224 5.7E-19 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS01510 1f6dec325341b003dac8b43f86cdd157 228 Gene3D G3DSA:1.10.10.10 125 227 2.6E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS01510 1f6dec325341b003dac8b43f86cdd157 228 SUPERFAMILY SSF52172 1 121 2.28E-38 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS01510 1f6dec325341b003dac8b43f86cdd157 228 SUPERFAMILY SSF46894 126 225 4.82E-23 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS01510 1f6dec325341b003dac8b43f86cdd157 228 SMART SM00862 148 224 3.6E-18 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS01510 1f6dec325341b003dac8b43f86cdd157 228 SMART SM00448 2 111 3.7E-43 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS07515 0a9abee4bd462994cd6a7f0325aef53a 172 Gene3D G3DSA:3.10.129.10 2 169 3.6E-59 T 11-11-2016 IPR029069 HotDog domain vm_RS07515 0a9abee4bd462994cd6a7f0325aef53a 172 SUPERFAMILY SSF54637 4 169 4.92E-56 T 11-11-2016 IPR029069 HotDog domain vm_RS07515 0a9abee4bd462994cd6a7f0325aef53a 172 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 2 172 51.377 T 11-11-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 vm_RS07515 0a9abee4bd462994cd6a7f0325aef53a 172 Pfam PF07977 FabA-like domain 29 158 2.4E-54 T 11-11-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 vm_RS07515 0a9abee4bd462994cd6a7f0325aef53a 172 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 4 172 2.1E-91 T 11-11-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 vm_RS00680 730d8bd0b421d830a4763d7e8ac5affe 390 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 114 386 1.0E-115 T 11-11-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 vm_RS00680 730d8bd0b421d830a4763d7e8ac5affe 390 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 360 373 - T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS00680 730d8bd0b421d830a4763d7e8ac5affe 390 SMART SM00963 91 171 6.0E-26 T 11-11-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS00680 730d8bd0b421d830a4763d7e8ac5affe 390 Gene3D G3DSA:1.20.120.140 78 167 1.9E-33 T 11-11-2016 vm_RS00680 730d8bd0b421d830a4763d7e8ac5affe 390 Pfam PF02881 SRP54-type protein, helical bundle domain 106 167 4.3E-13 T 11-11-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS00680 730d8bd0b421d830a4763d7e8ac5affe 390 SUPERFAMILY SSF47364 86 165 1.44E-21 T 11-11-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS00680 730d8bd0b421d830a4763d7e8ac5affe 390 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 114 387 64.507 T 11-11-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 vm_RS00680 730d8bd0b421d830a4763d7e8ac5affe 390 Gene3D G3DSA:3.40.50.300 182 387 9.0E-83 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00680 730d8bd0b421d830a4763d7e8ac5affe 390 SMART SM00382 185 365 1.2E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS00680 730d8bd0b421d830a4763d7e8ac5affe 390 SMART SM00962 186 387 7.7E-124 T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS00680 730d8bd0b421d830a4763d7e8ac5affe 390 Pfam PF00448 SRP54-type protein, GTPase domain 187 386 3.4E-78 T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS00680 730d8bd0b421d830a4763d7e8ac5affe 390 SUPERFAMILY SSF52540 183 387 7.26E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05290 52348fce13b46de08654c6001549910f 446 SUPERFAMILY SSF52172 2 188 6.55E-37 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS05290 52348fce13b46de08654c6001549910f 446 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 vm_RS05290 52348fce13b46de08654c6001549910f 446 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site vm_RS05290 52348fce13b46de08654c6001549910f 446 Gene3D G3DSA:3.40.50.300 143 316 2.7E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05290 52348fce13b46de08654c6001549910f 446 Pfam PF00158 Sigma-54 interaction domain 144 310 1.0E-69 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 vm_RS05290 52348fce13b46de08654c6001549910f 446 Gene3D G3DSA:1.10.10.60 368 440 7.0E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS05290 52348fce13b46de08654c6001549910f 446 SUPERFAMILY SSF46689 357 439 6.09E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS05290 52348fce13b46de08654c6001549910f 446 Gene3D G3DSA:3.40.50.2300 3 127 2.7E-30 T 11-11-2016 vm_RS05290 52348fce13b46de08654c6001549910f 446 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 vm_RS05290 52348fce13b46de08654c6001549910f 446 Pfam PF02954 Bacterial regulatory protein, Fis family 397 437 1.0E-9 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS05290 52348fce13b46de08654c6001549910f 446 SMART SM00382 164 308 4.4E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS05290 52348fce13b46de08654c6001549910f 446 Gene3D G3DSA:1.10.8.60 317 367 1.0E-21 T 11-11-2016 vm_RS05290 52348fce13b46de08654c6001549910f 446 SMART SM00448 2 114 1.8E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS05290 52348fce13b46de08654c6001549910f 446 SUPERFAMILY SSF52540 144 374 2.17E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05290 52348fce13b46de08654c6001549910f 446 Pfam PF00072 Response regulator receiver domain 4 114 1.7E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 SUPERFAMILY SSF54106 476 520 4.58E-9 T 11-11-2016 IPR018392 LysM domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 Gene3D G3DSA:3.10.350.10 530 574 3.4E-16 T 11-11-2016 IPR018392 LysM domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 SUPERFAMILY SSF54106 530 573 1.96E-10 T 11-11-2016 IPR018392 LysM domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 Gene3D G3DSA:3.40.630.40 320 396 1.9E-55 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 Gene3D G3DSA:3.40.630.40 171 268 1.9E-55 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 Pfam PF01476 LysM domain 478 519 3.3E-10 T 11-11-2016 IPR018392 LysM domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 Pfam PF01476 LysM domain 531 573 3.5E-12 T 11-11-2016 IPR018392 LysM domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 Pfam PF01476 LysM domain 414 456 2.9E-10 T 11-11-2016 IPR018392 LysM domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 173 392 4.5E-48 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 Pfam PF11741 AMIN domain 33 134 1.5E-16 T 11-11-2016 IPR021731 AMIN domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 SMART SM00257 477 520 4.2E-14 T 11-11-2016 IPR018392 LysM domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 SMART SM00257 530 573 2.7E-12 T 11-11-2016 IPR018392 LysM domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 SMART SM00257 413 456 3.4E-13 T 11-11-2016 IPR018392 LysM domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 SUPERFAMILY SSF53187 319 395 1.57E-50 T 11-11-2016 vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 SUPERFAMILY SSF53187 171 267 1.57E-50 T 11-11-2016 vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 SUPERFAMILY SSF54106 413 456 4.71E-10 T 11-11-2016 IPR018392 LysM domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 Gene3D G3DSA:3.10.350.10 411 457 3.8E-15 T 11-11-2016 IPR018392 LysM domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 Gene3D G3DSA:3.10.350.10 475 520 1.8E-14 T 11-11-2016 IPR018392 LysM domain vm_RS13845 3ada82617c9c1e02ca1a644043a83998 575 SMART SM00646 233 392 1.1E-65 T 11-11-2016 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 vm_RS14860 37d4892352d757266d71033179e1635e 270 PRINTS PR00123 ATP synthase A subunit signature 200 222 5.0E-13 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 vm_RS14860 37d4892352d757266d71033179e1635e 270 PRINTS PR00123 ATP synthase A subunit signature 101 117 5.0E-13 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 vm_RS14860 37d4892352d757266d71033179e1635e 270 PRINTS PR00123 ATP synthase A subunit signature 248 263 5.0E-13 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 vm_RS14860 37d4892352d757266d71033179e1635e 270 SUPERFAMILY SSF81336 93 262 1.15E-49 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 vm_RS14860 37d4892352d757266d71033179e1635e 270 ProSitePatterns PS00449 ATP synthase a subunit signature. 203 212 - T 11-11-2016 IPR023011 ATPase, F0 complex, subunit A, active site Reactome: R-HSA-163210 vm_RS14860 37d4892352d757266d71033179e1635e 270 Gene3D G3DSA:1.20.120.220 94 267 3.6E-60 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 vm_RS14860 37d4892352d757266d71033179e1635e 270 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 35 263 9.1E-45 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 vm_RS14860 37d4892352d757266d71033179e1635e 270 Hamap MF_01393 ATP synthase subunit a [atpB]. 14 268 15.353 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 vm_RS14860 37d4892352d757266d71033179e1635e 270 Pfam PF00119 ATP synthase A chain 44 262 4.2E-58 T 11-11-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 Reactome: R-HSA-163210 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 Gene3D G3DSA:3.20.20.20 365 637 1.3E-114 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 SUPERFAMILY SSF56507 904 1225 6.8E-129 T 11-11-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 Gene3D G3DSA:1.10.1240.10 653 737 4.6E-39 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 SMART SM01018 658 741 1.4E-43 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 SUPERFAMILY SSF52242 744 895 3.14E-45 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 Gene3D G3DSA:3.20.20.330 5 364 1.5E-126 T 11-11-2016 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 SUPERFAMILY SSF51717 357 631 5.36E-87 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 SUPERFAMILY SSF82282 8 400 1.7E-118 T 11-11-2016 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 SUPERFAMILY SSF47644 654 740 2.62E-29 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 TIGRFAM TIGR02082 metH: methionine synthase 13 1194 0.0 T 11-11-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 Gene3D G3DSA:3.40.50.280 746 896 5.2E-65 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 Pfam PF02607 B12 binding domain 660 734 6.9E-26 T 11-11-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 Pfam PF00809 Pterin binding enzyme 361 599 1.7E-59 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 940 1210 1.6E-121 T 11-11-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 Pfam PF02574 Homocysteine S-methyltransferase 18 326 1.5E-91 T 11-11-2016 IPR003726 Homocysteine-binding domain Reactome: R-HSA-1614635 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 Gene3D G3DSA:3.10.196.10 959 1225 7.1E-109 T 11-11-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 Pfam PF02310 B12 binding domain 749 843 5.8E-19 T 11-11-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 vm_RS13575 2d2a208b014570b8a171ce58c84db59a 1226 PIRSF PIRSF000381 3 1197 0.0 T 11-11-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS10185 b2160a0d5fcb630fc77b27b2874cc5f1 554 Pfam PF13537 Glutamine amidotransferase domain 48 166 2.3E-40 T 11-11-2016 IPR017932 Glutamine amidotransferase type 2 domain vm_RS10185 b2160a0d5fcb630fc77b27b2874cc5f1 554 SUPERFAMILY SSF52402 210 479 1.9E-72 T 11-11-2016 vm_RS10185 b2160a0d5fcb630fc77b27b2874cc5f1 554 Gene3D G3DSA:3.40.50.620 196 510 2.0E-113 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS10185 b2160a0d5fcb630fc77b27b2874cc5f1 554 SUPERFAMILY SSF56235 1 196 2.66E-57 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS10185 b2160a0d5fcb630fc77b27b2874cc5f1 554 Pfam PF00733 Asparagine synthase 367 511 9.0E-40 T 11-11-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 vm_RS10185 b2160a0d5fcb630fc77b27b2874cc5f1 554 Pfam PF00733 Asparagine synthase 211 366 2.8E-54 T 11-11-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 vm_RS10185 b2160a0d5fcb630fc77b27b2874cc5f1 554 Gene3D G3DSA:3.60.20.10 2 188 1.0E-66 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS10185 b2160a0d5fcb630fc77b27b2874cc5f1 554 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 372 1.7E-115 T 11-11-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|Reactome: R-HSA-380994|Reactome: R-HSA-70614 vm_RS04120 22e00029d01ef86393d8c64294bc07a5 623 Pfam PF02743 Cache domain 38 254 1.9E-33 T 11-11-2016 IPR033479 Double Cache domain 1 vm_RS04120 22e00029d01ef86393d8c64294bc07a5 623 SUPERFAMILY SSF58104 314 621 9.68E-74 T 11-11-2016 vm_RS04120 22e00029d01ef86393d8c64294bc07a5 623 Pfam PF00672 HAMP domain 273 342 4.9E-13 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS04120 22e00029d01ef86393d8c64294bc07a5 623 Gene3D G3DSA:3.30.450.20 139 270 1.0E-32 T 11-11-2016 vm_RS04120 22e00029d01ef86393d8c64294bc07a5 623 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 427 621 5.8E-47 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS04120 22e00029d01ef86393d8c64294bc07a5 623 SMART SM00304 292 346 2.0E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS04120 22e00029d01ef86393d8c64294bc07a5 623 SUPERFAMILY SSF103190 53 184 5.89E-17 T 11-11-2016 IPR029151 Periplasmic sensor domain-like vm_RS04120 22e00029d01ef86393d8c64294bc07a5 623 Gene3D G3DSA:1.10.287.950 375 593 2.4E-56 T 11-11-2016 vm_RS04120 22e00029d01ef86393d8c64294bc07a5 623 SMART SM00283 361 622 3.0E-75 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS13030 e77fd8dd06e127dc511bdaf6cca18a63 140 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 6 136 1.6E-48 T 11-11-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 vm_RS13030 e77fd8dd06e127dc511bdaf6cca18a63 140 SMART SM00732 3 104 3.7E-35 T 11-11-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 vm_RS13030 e77fd8dd06e127dc511bdaf6cca18a63 140 Gene3D G3DSA:3.30.420.140 3 138 6.7E-41 T 11-11-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 vm_RS13030 e77fd8dd06e127dc511bdaf6cca18a63 140 SUPERFAMILY SSF53098 3 137 4.4E-37 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS13030 e77fd8dd06e127dc511bdaf6cca18a63 140 Pfam PF03652 Holliday junction resolvase 4 136 1.1E-35 T 11-11-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 vm_RS13030 e77fd8dd06e127dc511bdaf6cca18a63 140 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 3 139 24.321 T 11-11-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 vm_RS01900 221f63142e5ddcb44d909c4790140980 196 Hamap MF_01415 Glutathione-regulated potassium-efflux system ancillary protein KefG [kefG]. 8 190 48.002 T 11-11-2016 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG GO:0006813 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 vm_RS01900 221f63142e5ddcb44d909c4790140980 196 Pfam PF02525 Flavodoxin-like fold 13 180 1.4E-45 T 11-11-2016 IPR003680 Flavodoxin-like fold vm_RS01900 221f63142e5ddcb44d909c4790140980 196 Gene3D G3DSA:3.40.50.360 13 188 2.6E-51 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS01900 221f63142e5ddcb44d909c4790140980 196 SUPERFAMILY SSF52218 13 186 1.52E-50 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS03660 0611d86181f8284ecc7eea5087b8bbe9 152 Pfam PF07977 FabA-like domain 19 143 3.3E-41 T 11-11-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 vm_RS03660 0611d86181f8284ecc7eea5087b8bbe9 152 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 10 151 36.67 T 11-11-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 vm_RS03660 0611d86181f8284ecc7eea5087b8bbe9 152 SUPERFAMILY SSF54637 9 148 2.28E-49 T 11-11-2016 IPR029069 HotDog domain vm_RS03660 0611d86181f8284ecc7eea5087b8bbe9 152 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 10 148 1.2E-58 T 11-11-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 vm_RS03660 0611d86181f8284ecc7eea5087b8bbe9 152 Gene3D G3DSA:3.10.129.10 4 149 1.5E-57 T 11-11-2016 IPR029069 HotDog domain vm_RS09110 3bb9b066c0a66104b9f09a5c6c6f5741 284 Gene3D G3DSA:3.40.50.10490 96 271 1.1E-37 T 11-11-2016 vm_RS09110 3bb9b066c0a66104b9f09a5c6c6f5741 284 SUPERFAMILY SSF46689 1 80 1.58E-21 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS09110 3bb9b066c0a66104b9f09a5c6c6f5741 284 SUPERFAMILY SSF53697 93 277 1.01E-39 T 11-11-2016 vm_RS09110 3bb9b066c0a66104b9f09a5c6c6f5741 284 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 76 1.0E-28 T 11-11-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 vm_RS09110 3bb9b066c0a66104b9f09a5c6c6f5741 284 Gene3D G3DSA:1.10.10.10 1 80 2.5E-31 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09110 3bb9b066c0a66104b9f09a5c6c6f5741 284 Pfam PF01380 SIS domain 124 252 2.3E-25 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 vm_RS07630 2ee4e0dc66ee3d98f0231244333ae71a 286 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 84 283 3.7E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS07630 2ee4e0dc66ee3d98f0231244333ae71a 286 SUPERFAMILY SSF161098 10 275 1.96E-54 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS07630 2ee4e0dc66ee3d98f0231244333ae71a 286 Gene3D G3DSA:1.10.3720.10 5 272 1.1E-49 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS04985 fa7e69b96f898cf8338c7e2dd281d817 134 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 11 131 1.5E-54 T 11-11-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 vm_RS04985 fa7e69b96f898cf8338c7e2dd281d817 134 SUPERFAMILY SSF51316 10 133 5.13E-57 T 11-11-2016 IPR011057 Mss4-like vm_RS04985 fa7e69b96f898cf8338c7e2dd281d817 134 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 11 134 36.524 T 11-11-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 vm_RS04985 fa7e69b96f898cf8338c7e2dd281d817 134 Pfam PF01641 SelR domain 15 132 6.5E-54 T 11-11-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 vm_RS04985 fa7e69b96f898cf8338c7e2dd281d817 134 Gene3D G3DSA:2.170.150.20 10 133 4.1E-59 T 11-11-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 vm_RS09395 a0bd857197cafb4276a2ed9f496e1c56 543 Gene3D G3DSA:3.40.190.10 158 310 2.0E-54 T 11-11-2016 vm_RS09395 a0bd857197cafb4276a2ed9f496e1c56 543 Gene3D G3DSA:3.10.105.10 311 511 5.9E-71 T 11-11-2016 vm_RS09395 a0bd857197cafb4276a2ed9f496e1c56 543 PIRSF PIRSF002741 1 543 7.3E-126 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 vm_RS09395 a0bd857197cafb4276a2ed9f496e1c56 543 SUPERFAMILY SSF53850 40 530 4.34E-154 T 11-11-2016 vm_RS09395 a0bd857197cafb4276a2ed9f496e1c56 543 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 87 109 - T 11-11-2016 IPR023765 Solute-binding protein family 5, conserved site vm_RS09395 a0bd857197cafb4276a2ed9f496e1c56 543 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 83 463 1.0E-96 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain vm_RS02970 7c520c03f6d5835e8854f1c5787be845 396 Pfam PF01098 Cell cycle protein 26 381 8.4E-116 T 11-11-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 vm_RS02970 7c520c03f6d5835e8854f1c5787be845 396 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 24 380 6.2E-130 T 11-11-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 vm_RS02970 7c520c03f6d5835e8854f1c5787be845 396 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 339 363 - T 11-11-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 vm_RS02970 7c520c03f6d5835e8854f1c5787be845 396 Hamap MF_00913 Putative lipid II flippase FtsW [ftsW]. 22 389 41.221 T 11-11-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 Pfam PF02272 DHHA1 domain 786 853 1.3E-15 T 11-11-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 SUPERFAMILY SSF55681 3 254 9.19E-109 T 11-11-2016 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 SUPERFAMILY SSF55186 551 712 1.83E-53 T 11-11-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 Gene3D G3DSA:3.30.930.10 3 251 5.0E-123 T 11-11-2016 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 SUPERFAMILY SSF50447 454 551 1.45E-18 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS12470 9de61e03813f5067bd8e944f46542044 860 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 860 197.33 T 11-11-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 652 695 3.1E-18 T 11-11-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 SMART SM00863 652 695 1.1E-21 T 11-11-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 7 839 0.0 T 11-11-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 Pfam PF01411 tRNA synthetases class II (A) 7 555 4.9E-223 T 11-11-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 SUPERFAMILY SSF101353 255 460 3.92E-59 T 11-11-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 PRINTS PR00980 Alanyl-tRNA synthetase signature 281 297 4.8E-31 T 11-11-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 PRINTS PR00980 Alanyl-tRNA synthetase signature 76 87 4.8E-31 T 11-11-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 PRINTS PR00980 Alanyl-tRNA synthetase signature 208 219 4.8E-31 T 11-11-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 PRINTS PR00980 Alanyl-tRNA synthetase signature 235 248 4.8E-31 T 11-11-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 vm_RS12470 9de61e03813f5067bd8e944f46542044 860 PRINTS PR00980 Alanyl-tRNA synthetase signature 305 318 4.8E-31 T 11-11-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 vm_RS10015 32f0a79618640f545261b18d037b19fa 505 Pfam PF00884 Sulfatase 34 359 1.8E-67 T 11-11-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 vm_RS10015 32f0a79618640f545261b18d037b19fa 505 Pfam PF14707 C-terminal region of aryl-sulfatase 398 497 1.7E-7 T 11-11-2016 vm_RS10015 32f0a79618640f545261b18d037b19fa 505 SUPERFAMILY SSF53649 30 498 1.74E-126 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 vm_RS10015 32f0a79618640f545261b18d037b19fa 505 Gene3D G3DSA:3.40.720.10 32 413 1.3E-101 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 vm_RS10015 32f0a79618640f545261b18d037b19fa 505 Gene3D G3DSA:3.30.1120.10 414 486 1.1E-12 T 11-11-2016 vm_RS08085 a303c7c63d5b00c0b91be693c33abd8d 379 SMART SM00448 9 121 1.5E-33 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS08085 a303c7c63d5b00c0b91be693c33abd8d 379 SMART SM00471 170 321 4.8E-9 T 11-11-2016 IPR003607 HD/PDEase domain vm_RS08085 a303c7c63d5b00c0b91be693c33abd8d 379 Pfam PF13487 HD domain 233 303 2.5E-20 T 11-11-2016 vm_RS08085 a303c7c63d5b00c0b91be693c33abd8d 379 SUPERFAMILY SSF52172 8 155 1.71E-37 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS08085 a303c7c63d5b00c0b91be693c33abd8d 379 Gene3D G3DSA:3.40.50.2300 3 129 1.2E-39 T 11-11-2016 vm_RS08085 a303c7c63d5b00c0b91be693c33abd8d 379 SUPERFAMILY SSF109604 149 348 3.77E-33 T 11-11-2016 vm_RS08085 a303c7c63d5b00c0b91be693c33abd8d 379 Pfam PF00072 Response regulator receiver domain 11 121 6.4E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS08085 a303c7c63d5b00c0b91be693c33abd8d 379 Gene3D G3DSA:1.10.3210.10 170 354 1.4E-17 T 11-11-2016 IPR006674 HD domain vm_RS03910 738e174fd89efa7037a51ff996bae2b5 312 PRINTS PR01002 Flagellar protein FlgJ signature 31 54 4.6E-30 T 11-11-2016 vm_RS03910 738e174fd89efa7037a51ff996bae2b5 312 PRINTS PR01002 Flagellar protein FlgJ signature 224 245 4.6E-30 T 11-11-2016 vm_RS03910 738e174fd89efa7037a51ff996bae2b5 312 PRINTS PR01002 Flagellar protein FlgJ signature 246 267 4.6E-30 T 11-11-2016 vm_RS03910 738e174fd89efa7037a51ff996bae2b5 312 PRINTS PR01002 Flagellar protein FlgJ signature 79 101 4.6E-30 T 11-11-2016 vm_RS03910 738e174fd89efa7037a51ff996bae2b5 312 PRINTS PR01002 Flagellar protein FlgJ signature 183 201 4.6E-30 T 11-11-2016 vm_RS03910 738e174fd89efa7037a51ff996bae2b5 312 PRINTS PR01002 Flagellar protein FlgJ signature 159 182 4.6E-30 T 11-11-2016 vm_RS03910 738e174fd89efa7037a51ff996bae2b5 312 PRINTS PR01002 Flagellar protein FlgJ signature 289 307 4.6E-30 T 11-11-2016 vm_RS03910 738e174fd89efa7037a51ff996bae2b5 312 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 11 306 1.7E-103 T 11-11-2016 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 vm_RS03910 738e174fd89efa7037a51ff996bae2b5 312 Gene3D G3DSA:1.10.530.10 139 204 2.2E-5 T 11-11-2016 vm_RS03910 738e174fd89efa7037a51ff996bae2b5 312 SMART SM00047 149 310 1.1E-70 T 11-11-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 vm_RS03910 738e174fd89efa7037a51ff996bae2b5 312 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 170 306 3.6E-19 T 11-11-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 vm_RS03910 738e174fd89efa7037a51ff996bae2b5 312 Pfam PF10135 Rod binding protein 53 102 7.8E-16 T 11-11-2016 IPR019301 Flagellar protein FlgJ, N-terminal vm_RS08985 73762a796876c3c3be40afba7304c729 332 Gene3D G3DSA:3.40.1030.10 71 329 4.6E-100 T 11-11-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS08985 73762a796876c3c3be40afba7304c729 332 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 5 330 1.3E-126 T 11-11-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 vm_RS08985 73762a796876c3c3be40afba7304c729 332 Pfam PF02885 Glycosyl transferase family, helical bundle domain 3 63 3.1E-17 T 11-11-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS08985 73762a796876c3c3be40afba7304c729 332 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 3 331 39.161 T 11-11-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18 vm_RS08985 73762a796876c3c3be40afba7304c729 332 Gene3D G3DSA:1.20.970.10 2 68 8.3E-29 T 11-11-2016 vm_RS08985 73762a796876c3c3be40afba7304c729 332 Pfam PF00591 Glycosyl transferase family, a/b domain 72 322 2.2E-101 T 11-11-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS08985 73762a796876c3c3be40afba7304c729 332 SUPERFAMILY SSF52418 70 329 4.06E-92 T 11-11-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS08985 73762a796876c3c3be40afba7304c729 332 SUPERFAMILY SSF47648 1 67 4.71E-20 T 11-11-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS01080 a0fd1b8ad3ee99a85aea0961b9bd1d53 156 Gene3D G3DSA:3.10.50.30 76 155 1.2E-26 T 11-11-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 vm_RS01080 a0fd1b8ad3ee99a85aea0961b9bd1d53 156 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 154 27.243 T 11-11-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 vm_RS01080 a0fd1b8ad3ee99a85aea0961b9bd1d53 156 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 119 135 - T 11-11-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 vm_RS01080 a0fd1b8ad3ee99a85aea0961b9bd1d53 156 SUPERFAMILY SSF54534 80 155 9.29E-20 T 11-11-2016 vm_RS01080 a0fd1b8ad3ee99a85aea0961b9bd1d53 156 PIRSF PIRSF006092 1 156 6.0E-43 T 11-11-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 vm_RS01080 a0fd1b8ad3ee99a85aea0961b9bd1d53 156 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 3.1E-23 T 11-11-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 vm_RS01080 a0fd1b8ad3ee99a85aea0961b9bd1d53 156 Gene3D G3DSA:1.10.287.180 2 75 1.1E-22 T 11-11-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 vm_RS01080 a0fd1b8ad3ee99a85aea0961b9bd1d53 156 SUPERFAMILY SSF46557 3 77 7.98E-25 T 11-11-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 vm_RS01080 a0fd1b8ad3ee99a85aea0961b9bd1d53 156 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 156 50.562 T 11-11-2016 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 vm_RS01080 a0fd1b8ad3ee99a85aea0961b9bd1d53 156 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 11-11-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 vm_RS01080 a0fd1b8ad3ee99a85aea0961b9bd1d53 156 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 2 155 6.9E-74 T 11-11-2016 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 vm_RS01080 a0fd1b8ad3ee99a85aea0961b9bd1d53 156 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 154 6.4E-23 T 11-11-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 vm_RS01560 1d5c0cc64fb2a992744293c4a85688a3 425 Pfam PF00390 Malic enzyme, N-terminal domain 35 160 9.2E-27 T 11-11-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 vm_RS01560 1d5c0cc64fb2a992744293c4a85688a3 425 PIRSF PIRSF000106 53 425 1.1E-71 T 11-11-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 vm_RS01560 1d5c0cc64fb2a992744293c4a85688a3 425 Pfam PF03949 Malic enzyme, NAD binding domain 175 366 5.0E-25 T 11-11-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 vm_RS01560 1d5c0cc64fb2a992744293c4a85688a3 425 SMART SM00919 173 409 1.3E-135 T 11-11-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 vm_RS01560 1d5c0cc64fb2a992744293c4a85688a3 425 Gene3D G3DSA:3.40.50.720 171 423 2.5E-84 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS01560 1d5c0cc64fb2a992744293c4a85688a3 425 SMART SM01274 28 161 9.5E-72 T 11-11-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 vm_RS01560 1d5c0cc64fb2a992744293c4a85688a3 425 Gene3D G3DSA:3.40.50.10380 18 170 3.3E-49 T 11-11-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 vm_RS01560 1d5c0cc64fb2a992744293c4a85688a3 425 SUPERFAMILY SSF51735 173 421 2.1E-79 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS01560 1d5c0cc64fb2a992744293c4a85688a3 425 ProSitePatterns PS00331 Malic enzymes signature. 169 185 - T 11-11-2016 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 vm_RS01560 1d5c0cc64fb2a992744293c4a85688a3 425 SUPERFAMILY SSF53223 20 171 3.81E-51 T 11-11-2016 vm_RS10675 1481fc15897e3d21e006a295ac67bad7 483 Gene3D G3DSA:3.40.50.620 173 333 1.5E-34 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS10675 1481fc15897e3d21e006a295ac67bad7 483 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 483 220.127 T 11-11-2016 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 vm_RS10675 1481fc15897e3d21e006a295ac67bad7 483 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 382 483 6.6E-40 T 11-11-2016 IPR026340 Thiazole biosynthesis domain GO:0052837 vm_RS10675 1481fc15897e3d21e006a295ac67bad7 483 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 175 369 1.1E-72 T 11-11-2016 IPR020536 Thil, AANH domain GO:0004810 vm_RS10675 1481fc15897e3d21e006a295ac67bad7 483 Pfam PF02926 THUMP domain 54 157 5.2E-22 T 11-11-2016 IPR004114 THUMP domain GO:0003723 vm_RS10675 1481fc15897e3d21e006a295ac67bad7 483 SUPERFAMILY SSF52821 399 482 1.17E-12 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS10675 1481fc15897e3d21e006a295ac67bad7 483 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 375 1.8E-110 T 11-11-2016 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 vm_RS10675 1481fc15897e3d21e006a295ac67bad7 483 SUPERFAMILY SSF143437 1 173 5.41E-46 T 11-11-2016 vm_RS10675 1481fc15897e3d21e006a295ac67bad7 483 SMART SM00981 75 165 9.5E-22 T 11-11-2016 IPR004114 THUMP domain GO:0003723 vm_RS10675 1481fc15897e3d21e006a295ac67bad7 483 Gene3D G3DSA:3.40.250.10 400 481 2.7E-11 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS10675 1481fc15897e3d21e006a295ac67bad7 483 SUPERFAMILY SSF52402 174 372 3.75E-43 T 11-11-2016 vm_RS06530 4a600219c8a22dbbc6b71f31af79347b 262 SUPERFAMILY SSF52540 4 252 8.34E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06530 4a600219c8a22dbbc6b71f31af79347b 262 Gene3D G3DSA:3.40.50.300 2 252 2.2E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06530 4a600219c8a22dbbc6b71f31af79347b 262 Pfam PF00005 ABC transporter 30 178 2.2E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS06530 4a600219c8a22dbbc6b71f31af79347b 262 SMART SM00382 38 227 2.6E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS04035 07f79c310ae77068b3c2d41e60e2c73e 205 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 4 203 27.535 T 11-11-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 vm_RS04035 07f79c310ae77068b3c2d41e60e2c73e 205 Pfam PF03550 Outer membrane lipoprotein LolB 44 201 1.3E-45 T 11-11-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 vm_RS04035 07f79c310ae77068b3c2d41e60e2c73e 205 SUPERFAMILY SSF89392 20 202 1.92E-50 T 11-11-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX vm_RS04035 07f79c310ae77068b3c2d41e60e2c73e 205 Gene3D G3DSA:2.50.20.10 15 203 3.3E-62 T 11-11-2016 vm_RS04035 07f79c310ae77068b3c2d41e60e2c73e 205 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 7 202 7.3E-42 T 11-11-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 317 495 2.8E-57 T 11-11-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 SUPERFAMILY SSF48179 496 604 8.5E-28 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 Gene3D G3DSA:1.10.1040.10 633 718 6.6E-21 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 497 593 2.9E-26 T 11-11-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 628 712 1.9E-5 T 11-11-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 716 53.359 T 11-11-2016 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 Gene3D G3DSA:3.90.226.10 235 296 1.9E-58 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 Gene3D G3DSA:3.90.226.10 4 201 1.9E-58 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 Gene3D G3DSA:1.10.1040.10 499 593 5.7E-22 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 SUPERFAMILY SSF51735 314 496 9.75E-54 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 SUPERFAMILY SSF52096 2 305 1.08E-66 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 208 4.5E-40 T 11-11-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 715 0.0 T 11-11-2016 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 494 518 - T 11-11-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726 vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 SUPERFAMILY SSF48179 624 715 5.1E-25 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 vm_RS14800 601ebc3155c54c84b3d5ead7c4a875ea 723 Gene3D G3DSA:3.40.50.720 312 498 6.3E-57 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS11655 888e26f59a6ab8bdefefb49a8981bb88 108 Gene3D G3DSA:3.30.160.100 2 92 6.1E-29 T 11-11-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 vm_RS11655 888e26f59a6ab8bdefefb49a8981bb88 108 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 100 5.1E-30 T 11-11-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 vm_RS11655 888e26f59a6ab8bdefefb49a8981bb88 108 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 92 7.0E-21 T 11-11-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 vm_RS11655 888e26f59a6ab8bdefefb49a8981bb88 108 SUPERFAMILY SSF69754 1 103 3.53E-29 T 11-11-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 vm_RS03465 0c8c13d468c4676d576e1da19ea6c13c 408 TIGRFAM TIGR01941 nqrF: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit 4 408 9.1E-228 T 11-11-2016 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 vm_RS03465 0c8c13d468c4676d576e1da19ea6c13c 408 Pfam PF00970 Oxidoreductase FAD-binding domain 205 267 9.6E-9 T 11-11-2016 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 vm_RS03465 0c8c13d468c4676d576e1da19ea6c13c 408 PIRSF PIRSF000044 1 408 1.3E-218 T 11-11-2016 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 vm_RS03465 0c8c13d468c4676d576e1da19ea6c13c 408 SUPERFAMILY SSF63380 106 273 8.42E-35 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 vm_RS03465 0c8c13d468c4676d576e1da19ea6c13c 408 Gene3D G3DSA:3.40.50.80 270 407 2.0E-40 T 11-11-2016 vm_RS03465 0c8c13d468c4676d576e1da19ea6c13c 408 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 41 116 1.9E-10 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 vm_RS03465 0c8c13d468c4676d576e1da19ea6c13c 408 Gene3D G3DSA:2.40.30.10 125 265 1.4E-60 T 11-11-2016 vm_RS03465 0c8c13d468c4676d576e1da19ea6c13c 408 Gene3D G3DSA:3.10.20.30 35 124 2.4E-20 T 11-11-2016 IPR012675 Beta-grasp domain vm_RS03465 0c8c13d468c4676d576e1da19ea6c13c 408 SUPERFAMILY SSF54292 38 125 4.57E-21 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 vm_RS03465 0c8c13d468c4676d576e1da19ea6c13c 408 Pfam PF00175 Oxidoreductase NAD-binding domain 278 386 2.9E-17 T 11-11-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 vm_RS03465 0c8c13d468c4676d576e1da19ea6c13c 408 Hamap MF_00430 Na(+)-translocating NADH-quinone reductase subunit F [nqrF]. 2 408 62.427 T 11-11-2016 IPR010205 Na(+)-translocating NADH-quinone reductase subunit F GO:0006814|GO:0016021|GO:0016655|GO:0051537|GO:0055114 vm_RS03465 0c8c13d468c4676d576e1da19ea6c13c 408 SUPERFAMILY SSF52343 259 403 1.03E-35 T 11-11-2016 vm_RS18630 1bd892ec60636779b8702f6429248feb 140 SUPERFAMILY SSF56235 1 123 2.66E-7 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS18630 1bd892ec60636779b8702f6429248feb 140 Pfam PF13230 Glutamine amidotransferases class-II 1 126 7.0E-41 T 11-11-2016 IPR026869 Putative glutamine amidotransferase type 2 vm_RS18630 1bd892ec60636779b8702f6429248feb 140 Gene3D G3DSA:3.60.20.10 1 122 1.5E-20 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS13945 b431fbd3d0615ba489daef97d344d70c 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 52 4.0E-13 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS13945 b431fbd3d0615ba489daef97d344d70c 211 Gene3D G3DSA:1.10.357.10 2 164 8.1E-28 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 vm_RS13945 b431fbd3d0615ba489daef97d344d70c 211 Pfam PF13972 Bacterial transcriptional repressor 57 199 1.5E-41 T 11-11-2016 IPR025722 Bacterial transcriptional repressor TetR vm_RS13945 b431fbd3d0615ba489daef97d344d70c 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 8.2E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS13945 b431fbd3d0615ba489daef97d344d70c 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 8.2E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS13945 b431fbd3d0615ba489daef97d344d70c 211 SUPERFAMILY SSF46689 3 72 3.3E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS02780 8a758a94a0c17ace32c005d8d44eba2b 267 PRINTS PR00169 Potassium channel signature 123 146 1.7E-7 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 vm_RS02780 8a758a94a0c17ace32c005d8d44eba2b 267 PRINTS PR00169 Potassium channel signature 183 209 1.7E-7 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 vm_RS02780 8a758a94a0c17ace32c005d8d44eba2b 267 PRINTS PR00169 Potassium channel signature 154 176 1.7E-7 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 vm_RS02780 8a758a94a0c17ace32c005d8d44eba2b 267 Gene3D G3DSA:1.20.5.110 175 215 1.3E-15 T 11-11-2016 vm_RS02780 8a758a94a0c17ace32c005d8d44eba2b 267 SUPERFAMILY SSF81324 7 210 7.59E-49 T 11-11-2016 vm_RS02780 8a758a94a0c17ace32c005d8d44eba2b 267 Gene3D G3DSA:1.10.287.70 127 173 2.1E-16 T 11-11-2016 vm_RS02780 8a758a94a0c17ace32c005d8d44eba2b 267 Pfam PF00520 Ion transport protein 19 207 4.7E-17 T 11-11-2016 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 vm_RS02780 8a758a94a0c17ace32c005d8d44eba2b 267 Gene3D G3DSA:1.20.120.350 10 126 2.7E-16 T 11-11-2016 IPR027359 Voltage-dependent channel, four helix bundle domain vm_RS03240 5c9a074065080f2a8e13f973065e30cc 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.8E-6 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS03240 5c9a074065080f2a8e13f973065e30cc 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.8E-6 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS03240 5c9a074065080f2a8e13f973065e30cc 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.8E-6 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS03240 5c9a074065080f2a8e13f973065e30cc 309 Gene3D G3DSA:3.40.190.10 95 179 6.6E-28 T 11-11-2016 vm_RS03240 5c9a074065080f2a8e13f973065e30cc 309 SUPERFAMILY SSF46785 4 87 7.18E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS03240 5c9a074065080f2a8e13f973065e30cc 309 SUPERFAMILY SSF53850 95 294 3.98E-31 T 11-11-2016 vm_RS03240 5c9a074065080f2a8e13f973065e30cc 309 Gene3D G3DSA:1.10.10.10 5 83 5.0E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS03240 5c9a074065080f2a8e13f973065e30cc 309 Gene3D G3DSA:3.40.190.10 180 258 3.0E-11 T 11-11-2016 vm_RS03240 5c9a074065080f2a8e13f973065e30cc 309 Pfam PF03466 LysR substrate binding domain 93 289 2.6E-25 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS03240 5c9a074065080f2a8e13f973065e30cc 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 2.1E-19 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 Gene3D G3DSA:2.60.260.20 258 335 1.4E-22 T 11-11-2016 vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 11-11-2016 IPR018253 DnaJ domain, conserved site vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 SUPERFAMILY SSF46565 1 110 1.7E-35 T 11-11-2016 IPR001623 DnaJ domain vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 Pfam PF00684 DnaJ central domain 149 209 6.6E-15 T 11-11-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 351 1.9E-139 T 11-11-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 SUPERFAMILY SSF49493 261 346 3.53E-22 T 11-11-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 SMART SM00271 4 62 8.0E-31 T 11-11-2016 IPR001623 DnaJ domain vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 PRINTS PR00625 DnaJ domain signature 7 25 6.6E-32 T 11-11-2016 IPR001623 DnaJ domain vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 PRINTS PR00625 DnaJ domain signature 25 40 6.6E-32 T 11-11-2016 IPR001623 DnaJ domain vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 PRINTS PR00625 DnaJ domain signature 42 62 6.6E-32 T 11-11-2016 IPR001623 DnaJ domain vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 PRINTS PR00625 DnaJ domain signature 62 81 6.6E-32 T 11-11-2016 IPR001623 DnaJ domain vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 375 42.601 T 11-11-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 Pfam PF01556 DnaJ C terminal domain 123 335 3.9E-45 T 11-11-2016 IPR002939 Chaperone DnaJ, C-terminal vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 Gene3D G3DSA:1.10.287.110 1 105 1.9E-36 T 11-11-2016 IPR001623 DnaJ domain vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 SUPERFAMILY SSF49493 116 140 7.98E-20 T 11-11-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 SUPERFAMILY SSF49493 188 262 7.98E-20 T 11-11-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 Pfam PF00226 DnaJ domain 5 67 3.8E-27 T 11-11-2016 IPR001623 DnaJ domain vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 SUPERFAMILY SSF57938 136 212 2.22E-22 T 11-11-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 Gene3D G3DSA:2.60.260.20 213 256 2.5E-21 T 11-11-2016 vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 Gene3D G3DSA:2.60.260.20 110 142 2.5E-21 T 11-11-2016 vm_RS10840 96d4483e930f0d65ec630df3fa03338b 381 Gene3D G3DSA:2.10.230.10 143 212 3.0E-24 T 11-11-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 vm_RS08520 ff9d7c977d84e458d3d35ecd163af7ec 405 Pfam PF07690 Major Facilitator Superfamily 11 238 9.9E-16 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 vm_RS08520 ff9d7c977d84e458d3d35ecd163af7ec 405 Gene3D G3DSA:1.20.1250.20 3 192 4.7E-20 T 11-11-2016 vm_RS08520 ff9d7c977d84e458d3d35ecd163af7ec 405 Gene3D G3DSA:1.20.1250.20 208 392 9.9E-23 T 11-11-2016 vm_RS08520 ff9d7c977d84e458d3d35ecd163af7ec 405 SUPERFAMILY SSF103473 5 391 1.7E-43 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS03375 f36a304a97973a214b232e6da7208731 143 SUPERFAMILY SSF82649 3 141 2.3E-47 T 11-11-2016 vm_RS03375 f36a304a97973a214b232e6da7208731 143 Gene3D G3DSA:3.90.1010.10 3 142 1.9E-51 T 11-11-2016 vm_RS03375 f36a304a97973a214b232e6da7208731 143 TIGRFAM TIGR03391 FeS_syn_CsdE: cysteine desulfurase, sulfur acceptor subunit CsdE 6 140 4.1E-43 T 11-11-2016 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE vm_RS03375 f36a304a97973a214b232e6da7208731 143 Pfam PF02657 Fe-S metabolism associated domain 20 139 3.1E-44 T 11-11-2016 IPR003808 Fe-S metabolism associated domain, SufE-like vm_RS14510 c4bb2da3259cb7b7fe25cb9ab3d03663 238 Gene3D G3DSA:3.30.230.70 5 234 5.8E-36 T 11-11-2016 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 vm_RS14510 c4bb2da3259cb7b7fe25cb9ab3d03663 238 Pfam PF03725 3' exoribonuclease family, domain 2 159 224 2.6E-11 T 11-11-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 vm_RS14510 c4bb2da3259cb7b7fe25cb9ab3d03663 238 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 2 236 7.3E-112 T 11-11-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 vm_RS14510 c4bb2da3259cb7b7fe25cb9ab3d03663 238 ProSitePatterns PS01277 Ribonuclease PH signature. 116 128 - T 11-11-2016 IPR018336 Ribonuclease PH, conserved site vm_RS14510 c4bb2da3259cb7b7fe25cb9ab3d03663 238 SUPERFAMILY SSF54211 1 181 8.1E-46 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS14510 c4bb2da3259cb7b7fe25cb9ab3d03663 238 Hamap MF_00564 Ribonuclease PH [rph]. 1 237 48.323 T 11-11-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 vm_RS14510 c4bb2da3259cb7b7fe25cb9ab3d03663 238 Pfam PF01138 3' exoribonuclease family, domain 1 10 140 4.8E-25 T 11-11-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 vm_RS14510 c4bb2da3259cb7b7fe25cb9ab3d03663 238 SUPERFAMILY SSF55666 153 234 1.07E-25 T 11-11-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 vm_RS09210 571d1d6ce753f2c1ae0a8fb5a1c8bdb2 135 SUPERFAMILY SSF81273 2 58 9.22E-17 T 11-11-2016 vm_RS09210 571d1d6ce753f2c1ae0a8fb5a1c8bdb2 135 Gene3D G3DSA:4.10.430.10 92 135 2.5E-25 T 11-11-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 vm_RS09210 571d1d6ce753f2c1ae0a8fb5a1c8bdb2 135 SMART SM00528 88 135 9.4E-25 T 11-11-2016 IPR027444 Histone-like protein H-NS, C-terminal domain GO:0003677 vm_RS09210 571d1d6ce753f2c1ae0a8fb5a1c8bdb2 135 SUPERFAMILY SSF81273 93 134 8.63E-12 T 11-11-2016 vm_RS09210 571d1d6ce753f2c1ae0a8fb5a1c8bdb2 135 PIRSF PIRSF002096 1 135 5.4E-55 T 11-11-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 vm_RS09210 571d1d6ce753f2c1ae0a8fb5a1c8bdb2 135 Gene3D G3DSA:1.10.287.1050 1 58 1.5E-18 T 11-11-2016 IPR027454 Histone-like protein H-NS family, oligomerisation domain GO:0046983 vm_RS09210 571d1d6ce753f2c1ae0a8fb5a1c8bdb2 135 Pfam PF00816 H-NS histone family 36 129 6.8E-19 T 11-11-2016 IPR001801 Histone-like protein H-NS GO:0003677|GO:0005622|GO:0006355 vm_RS05355 7c1a97ecb913724e7b3644d835826b4e 92 SUPERFAMILY SSF47729 1 91 3.39E-30 T 11-11-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 vm_RS05355 7c1a97ecb913724e7b3644d835826b4e 92 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 11-11-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 vm_RS05355 7c1a97ecb913724e7b3644d835826b4e 92 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 91 4.4E-48 T 11-11-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 vm_RS05355 7c1a97ecb913724e7b3644d835826b4e 92 SMART SM00411 1 91 5.9E-44 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS05355 7c1a97ecb913724e7b3644d835826b4e 92 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 92 30.229 T 11-11-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 vm_RS05355 7c1a97ecb913724e7b3644d835826b4e 92 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.7E-18 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS05355 7c1a97ecb913724e7b3644d835826b4e 92 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.7E-18 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS05355 7c1a97ecb913724e7b3644d835826b4e 92 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.7E-18 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS05355 7c1a97ecb913724e7b3644d835826b4e 92 Pfam PF00216 Bacterial DNA-binding protein 1 91 4.3E-31 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS05355 7c1a97ecb913724e7b3644d835826b4e 92 Gene3D G3DSA:4.10.520.10 1 91 1.1E-34 T 11-11-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 vm_RS13905 36eb6465c7f7ebd318a3e1dfbbb460ae 181 SMART SM00479 7 180 3.0E-20 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS13905 36eb6465c7f7ebd318a3e1dfbbb460ae 181 SUPERFAMILY SSF53098 3 180 2.8E-49 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS13905 36eb6465c7f7ebd318a3e1dfbbb460ae 181 Pfam PF00929 Exonuclease 9 170 8.0E-36 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS13905 36eb6465c7f7ebd318a3e1dfbbb460ae 181 Gene3D G3DSA:3.30.420.10 4 180 3.8E-76 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS13905 36eb6465c7f7ebd318a3e1dfbbb460ae 181 Hamap MF_00045 Oligoribonuclease [orn]. 3 181 43.01 T 11-11-2016 IPR022894 Oligoribonuclease GO:0016788 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 Pfam PF00009 Elongation factor Tu GTP binding domain 7 278 7.5E-60 T 11-11-2016 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 PRINTS PR00315 GTP-binding elongation factor signature 9 22 1.2E-13 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 PRINTS PR00315 GTP-binding elongation factor signature 75 85 1.2E-13 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 PRINTS PR00315 GTP-binding elongation factor signature 55 63 1.2E-13 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 PRINTS PR00315 GTP-binding elongation factor signature 127 136 1.2E-13 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 Pfam PF00679 Elongation factor G C-terminus 597 683 1.1E-28 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 48 63 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 Pfam PF14492 Elongation Factor G, domain II 401 474 7.6E-29 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 Gene3D G3DSA:2.40.30.10 304 401 2.5E-35 T 11-11-2016 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 SUPERFAMILY SSF54211 476 596 7.08E-40 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 Gene3D G3DSA:3.40.50.300 3 283 2.4E-95 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 Pfam PF03764 Elongation factor G, domain IV 476 594 3.5E-44 T 11-11-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 Hamap MF_00054_B Elongation factor G [fusA]. 3 688 100.99 T 11-11-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 SMART SM00889 477 595 2.9E-60 T 11-11-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 175 4.1E-25 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 SUPERFAMILY SSF54980 600 689 2.23E-29 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 Gene3D G3DSA:3.30.70.870 402 477 1.9E-31 T 11-11-2016 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 SUPERFAMILY SSF52540 4 278 3.91E-99 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 TIGRFAM TIGR00484 EF-G: translation elongation factor G 3 689 9.3E-296 T 11-11-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 SUPERFAMILY SSF50447 261 399 2.43E-32 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 Pfam PF03144 Elongation factor Tu domain 2 321 388 4.0E-17 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 Gene3D G3DSA:3.30.230.10 481 596 8.9E-45 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 Gene3D G3DSA:3.30.70.240 597 682 4.5E-32 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 SUPERFAMILY SSF54980 401 478 1.8E-20 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS03235 0ecf3258f92dbba9f3ea5849bd0637ef 695 SMART SM00838 597 684 8.6E-47 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS04140 fb9b7876322586d679f1a43576019bf6 397 Gene3D G3DSA:3.40.50.1820 151 275 2.4E-5 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS04140 fb9b7876322586d679f1a43576019bf6 397 Gene3D G3DSA:3.40.50.2300 1 106 2.9E-6 T 11-11-2016 vm_RS04140 fb9b7876322586d679f1a43576019bf6 397 SUPERFAMILY SSF52172 1 112 2.05E-5 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS00130 7bad95ce52e52cb65e4e2aa8a2582e57 474 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 359 471 1.9E-29 T 11-11-2016 IPR032879 FixG, C-terminal immunoglobulin-like domain vm_RS00130 7bad95ce52e52cb65e4e2aa8a2582e57 474 Gene3D G3DSA:1.10.1060.10 226 283 3.6E-7 T 11-11-2016 vm_RS00130 7bad95ce52e52cb65e4e2aa8a2582e57 474 Gene3D G3DSA:3.30.70.20 284 319 5.6E-6 T 11-11-2016 vm_RS00130 7bad95ce52e52cb65e4e2aa8a2582e57 474 Gene3D G3DSA:2.60.40.10 357 472 2.6E-36 T 11-11-2016 IPR013783 Immunoglobulin-like fold vm_RS00130 7bad95ce52e52cb65e4e2aa8a2582e57 474 Pfam PF13746 4Fe-4S dicluster domain 223 327 3.7E-41 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain vm_RS00130 7bad95ce52e52cb65e4e2aa8a2582e57 474 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 275 286 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS00130 7bad95ce52e52cb65e4e2aa8a2582e57 474 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 44 472 1.8E-175 T 11-11-2016 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021 vm_RS00130 7bad95ce52e52cb65e4e2aa8a2582e57 474 SUPERFAMILY SSF54862 176 350 1.93E-31 T 11-11-2016 vm_RS00130 7bad95ce52e52cb65e4e2aa8a2582e57 474 SUPERFAMILY SSF54862 108 130 1.93E-31 T 11-11-2016 vm_RS00130 7bad95ce52e52cb65e4e2aa8a2582e57 474 Pfam PF12801 4Fe-4S binding domain 98 137 1.0E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain vm_RS04040 3278923afa4f85b45fa2f7b3512d15a7 419 Gene3D G3DSA:3.40.50.720 182 356 3.9E-41 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04040 3278923afa4f85b45fa2f7b3512d15a7 419 SUPERFAMILY SSF51735 161 313 5.11E-37 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04040 3278923afa4f85b45fa2f7b3512d15a7 419 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 97 120 - T 11-11-2016 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 vm_RS04040 3278923afa4f85b45fa2f7b3512d15a7 419 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 416 30.647 T 11-11-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 vm_RS04040 3278923afa4f85b45fa2f7b3512d15a7 419 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 415 1.6E-145 T 11-11-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 vm_RS04040 3278923afa4f85b45fa2f7b3512d15a7 419 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 154 5.4E-52 T 11-11-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 vm_RS04040 3278923afa4f85b45fa2f7b3512d15a7 419 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 170 304 4.3E-50 T 11-11-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase vm_RS04040 3278923afa4f85b45fa2f7b3512d15a7 419 PIRSF PIRSF000445 1 419 2.3E-157 T 11-11-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 vm_RS04040 3278923afa4f85b45fa2f7b3512d15a7 419 SUPERFAMILY SSF69742 1 156 2.22E-48 T 11-11-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 vm_RS04040 3278923afa4f85b45fa2f7b3512d15a7 419 SUPERFAMILY SSF69075 315 416 2.22E-27 T 11-11-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 vm_RS04040 3278923afa4f85b45fa2f7b3512d15a7 419 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 318 413 1.9E-22 T 11-11-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188 vm_RS12125 33ddde8ff70bad84b377ccf65af87b2d 290 Gene3D G3DSA:3.30.420.40 1 77 9.0E-5 T 11-11-2016 vm_RS12125 33ddde8ff70bad84b377ccf65af87b2d 290 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 5 282 2.0E-49 T 11-11-2016 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 vm_RS12125 33ddde8ff70bad84b377ccf65af87b2d 290 SUPERFAMILY SSF53067 113 282 1.76E-43 T 11-11-2016 vm_RS12125 33ddde8ff70bad84b377ccf65af87b2d 290 SUPERFAMILY SSF53067 1 111 7.18E-26 T 11-11-2016 vm_RS01840 16774e6d338e634badc721f3772c1923 423 Gene3D G3DSA:3.50.50.60 2 104 9.1E-33 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS01840 16774e6d338e634badc721f3772c1923 423 Gene3D G3DSA:3.50.50.60 264 342 9.1E-33 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS01840 16774e6d338e634badc721f3772c1923 423 SUPERFAMILY SSF51905 129 243 3.02E-5 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS01840 16774e6d338e634badc721f3772c1923 423 Gene3D G3DSA:3.50.50.60 105 246 6.7E-4 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS01840 16774e6d338e634badc721f3772c1923 423 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 303 2.8E-18 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS01840 16774e6d338e634badc721f3772c1923 423 SUPERFAMILY SSF51905 257 309 7.6E-26 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS01840 16774e6d338e634badc721f3772c1923 423 SUPERFAMILY SSF51905 3 109 7.6E-26 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02030 474b1e0adc858e495236133b6640a690 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 5.0E-74 T 11-11-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 vm_RS02030 474b1e0adc858e495236133b6640a690 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 11-11-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS02030 474b1e0adc858e495236133b6640a690 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.175 T 11-11-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 vm_RS02030 474b1e0adc858e495236133b6640a690 177 Gene3D G3DSA:3.90.930.12 2 82 1.1E-29 T 11-11-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02030 474b1e0adc858e495236133b6640a690 177 SUPERFAMILY SSF56053 83 177 9.16E-36 T 11-11-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02030 474b1e0adc858e495236133b6640a690 177 Gene3D G3DSA:3.90.930.12 83 177 9.0E-40 T 11-11-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02030 474b1e0adc858e495236133b6640a690 177 PIRSF PIRSF002162 1 177 9.5E-44 T 11-11-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02030 474b1e0adc858e495236133b6640a690 177 Pfam PF00347 Ribosomal protein L6 11 82 3.7E-21 T 11-11-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02030 474b1e0adc858e495236133b6640a690 177 Pfam PF00347 Ribosomal protein L6 91 164 1.9E-18 T 11-11-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02030 474b1e0adc858e495236133b6640a690 177 SUPERFAMILY SSF56053 1 82 7.85E-25 T 11-11-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02030 474b1e0adc858e495236133b6640a690 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 2.0E-33 T 11-11-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 vm_RS02030 474b1e0adc858e495236133b6640a690 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 2.0E-33 T 11-11-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 vm_RS02030 474b1e0adc858e495236133b6640a690 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 2.0E-33 T 11-11-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 SUPERFAMILY SSF52210 123 286 1.14E-56 T 11-11-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 Gene3D G3DSA:3.40.50.261 119 287 2.5E-78 T 11-11-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 Pfam PF00549 CoA-ligase 151 270 2.8E-21 T 11-11-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 Pfam PF02629 CoA binding domain 6 99 2.3E-31 T 11-11-2016 IPR003781 CoA-binding GO:0048037 vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 SUPERFAMILY SSF51735 1 122 2.89E-43 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 1.4E-40 T 11-11-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 1.4E-40 T 11-11-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 1.4E-40 T 11-11-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 1.4E-40 T 11-11-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 PIRSF PIRSF001553 1 289 3.1E-134 T 11-11-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 287 1.8E-145 T 11-11-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 11-11-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 Gene3D G3DSA:3.40.50.720 2 118 2.3E-56 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 11-11-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 vm_RS04520 34aa025251a1814f6e3bdb72e7354ea6 290 SMART SM00881 4 100 3.0E-36 T 11-11-2016 IPR003781 CoA-binding GO:0048037 vm_RS07875 deb455e0fd03c57617f0123c728783ec 467 Pfam PF07690 Major Facilitator Superfamily 21 400 5.3E-50 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 vm_RS07875 deb455e0fd03c57617f0123c728783ec 467 PRINTS PR01036 Tetracycline resistance protein TetB signature 109 129 1.4E-7 T 11-11-2016 vm_RS07875 deb455e0fd03c57617f0123c728783ec 467 PRINTS PR01036 Tetracycline resistance protein TetB signature 139 163 1.4E-7 T 11-11-2016 vm_RS07875 deb455e0fd03c57617f0123c728783ec 467 PRINTS PR01036 Tetracycline resistance protein TetB signature 298 322 1.4E-7 T 11-11-2016 vm_RS07875 deb455e0fd03c57617f0123c728783ec 467 PRINTS PR01036 Tetracycline resistance protein TetB signature 391 410 1.4E-7 T 11-11-2016 vm_RS07875 deb455e0fd03c57617f0123c728783ec 467 Gene3D G3DSA:1.20.1250.20 20 197 2.7E-27 T 11-11-2016 vm_RS07875 deb455e0fd03c57617f0123c728783ec 467 SUPERFAMILY SSF103473 245 462 1.12E-60 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS07875 deb455e0fd03c57617f0123c728783ec 467 SUPERFAMILY SSF103473 13 202 1.12E-60 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS07875 deb455e0fd03c57617f0123c728783ec 467 Gene3D G3DSA:1.20.1250.20 259 463 6.3E-18 T 11-11-2016 vm_RS10435 e75cc3616cad51dda88f2c95b4b79684 737 Pfam PF13807 G-rich domain on putative tyrosine kinase 397 468 4.2E-10 T 11-11-2016 IPR032807 Tyrosine kinase, G-rich domain vm_RS10435 e75cc3616cad51dda88f2c95b4b79684 737 Pfam PF02706 Chain length determinant protein 12 196 6.9E-20 T 11-11-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 vm_RS10435 e75cc3616cad51dda88f2c95b4b79684 737 Pfam PF13614 AAA domain 548 684 5.1E-13 T 11-11-2016 IPR025669 AAA domain vm_RS10435 e75cc3616cad51dda88f2c95b4b79684 737 Gene3D G3DSA:3.40.50.300 538 728 1.3E-35 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10435 e75cc3616cad51dda88f2c95b4b79684 737 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 520 723 3.7E-46 T 11-11-2016 IPR005702 Exopolysaccharide synthesis protein GO:0045226 vm_RS10435 e75cc3616cad51dda88f2c95b4b79684 737 SUPERFAMILY SSF52540 538 717 6.49E-37 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10340 4b5551c230d5e42a5ef44eff670ca094 505 Pfam PF00795 Carbon-nitrogen hydrolase 221 469 1.3E-42 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 vm_RS10340 4b5551c230d5e42a5ef44eff670ca094 505 Gene3D G3DSA:3.60.110.10 213 482 2.7E-23 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 vm_RS10340 4b5551c230d5e42a5ef44eff670ca094 505 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 8 490 23.781 T 11-11-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 vm_RS10340 4b5551c230d5e42a5ef44eff670ca094 505 SUPERFAMILY SSF56317 216 485 3.01E-40 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 vm_RS10340 4b5551c230d5e42a5ef44eff670ca094 505 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 61 453 4.5E-98 T 11-11-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 SUPERFAMILY SSF52317 9 200 5.66E-57 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 205 517 1.2E-155 T 11-11-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 7.3E-7 T 11-11-2016 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 7.3E-7 T 11-11-2016 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 7.3E-7 T 11-11-2016 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 Pfam PF00958 GMP synthase C terminal domain 425 516 1.1E-43 T 11-11-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 Gene3D G3DSA:3.40.50.880 4 214 1.6E-63 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 517 56.399 T 11-11-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 1.3E-7 T 11-11-2016 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.3E-7 T 11-11-2016 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.3E-7 T 11-11-2016 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 Pfam PF02540 NAD synthase 211 285 1.1E-7 T 11-11-2016 IPR022310 NAD/GMP synthase vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 PRINTS PR00097 Anthranilate synthase component II signature 54 63 3.8E-6 T 11-11-2016 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 PRINTS PR00097 Anthranilate synthase component II signature 81 92 3.8E-6 T 11-11-2016 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 PRINTS PR00097 Anthranilate synthase component II signature 169 182 3.8E-6 T 11-11-2016 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 Gene3D G3DSA:3.40.50.620 215 391 9.9E-58 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 197 1.2E-83 T 11-11-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 SUPERFAMILY SSF54810 397 517 5.62E-51 T 11-11-2016 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 Pfam PF00117 Glutamine amidotransferase class-I 12 191 1.0E-41 T 11-11-2016 IPR017926 Glutamine amidotransferase vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 SUPERFAMILY SSF52402 189 412 5.07E-58 T 11-11-2016 vm_RS11335 8770420f8b31ede4bd9a5fab59e2e854 517 Gene3D G3DSA:3.30.300.10 393 517 2.8E-53 T 11-11-2016 vm_RS19645 e4917a4742f2a651ee69811d8d53f8a0 163 Gene3D G3DSA:3.20.20.70 1 163 1.2E-48 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS19645 e4917a4742f2a651ee69811d8d53f8a0 163 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 1 163 6.3E-37 T 11-11-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 vm_RS19645 e4917a4742f2a651ee69811d8d53f8a0 163 SUPERFAMILY SSF51395 1 163 1.78E-48 T 11-11-2016 vm_RS09660 05fa7cd3bada96f0d4bd4091f51ed34e 1269 Pfam PF13289 SIR2-like domain 133 270 7.2E-12 T 11-11-2016 vm_RS09660 05fa7cd3bada96f0d4bd4091f51ed34e 1269 SUPERFAMILY SSF52467 76 239 4.14E-6 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS09660 05fa7cd3bada96f0d4bd4091f51ed34e 1269 SUPERFAMILY SSF52467 18 43 4.14E-6 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS09660 05fa7cd3bada96f0d4bd4091f51ed34e 1269 Gene3D G3DSA:3.40.50.1220 117 258 6.6E-6 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS09660 05fa7cd3bada96f0d4bd4091f51ed34e 1269 Gene3D G3DSA:3.40.50.1220 18 41 6.6E-6 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 Gene3D G3DSA:1.10.10.10 464 515 1.3E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 Gene3D G3DSA:1.10.601.10 112 460 2.9E-132 T 11-11-2016 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 Pfam PF04546 Sigma-70, non-essential region 139 360 1.9E-65 T 11-11-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 387 623 2.7E-120 T 11-11-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 584 610 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 SUPERFAMILY SSF88946 115 458 2.49E-97 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 Pfam PF04545 Sigma-70, region 4 559 612 1.5E-19 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 Pfam PF04542 Sigma-70 region 2 391 460 1.8E-21 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 SUPERFAMILY SSF88659 521 623 1.31E-25 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 SUPERFAMILY SSF88659 464 537 2.25E-20 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 1.5E-12 T 11-11-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 387 612 1.2E-37 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 Pfam PF03979 Sigma-70 factor, region 1.1 4 80 6.9E-29 T 11-11-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 415 428 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 Pfam PF04539 Sigma-70 region 3 470 545 1.3E-28 T 11-11-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 Gene3D G3DSA:1.10.10.10 556 624 7.0E-33 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 4 624 45.811 T 11-11-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 PRINTS PR00046 Major sigma-70 factor signature 599 610 3.3E-31 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 PRINTS PR00046 Major sigma-70 factor signature 415 428 3.3E-31 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 PRINTS PR00046 Major sigma-70 factor signature 439 447 3.3E-31 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 PRINTS PR00046 Major sigma-70 factor signature 584 599 3.3E-31 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12610 f50826e6df25c5100d8fa77d20167b8f 625 PRINTS PR00046 Major sigma-70 factor signature 563 575 3.3E-31 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 SUPERFAMILY SSF50494 37 263 2.85E-65 T 11-11-2016 IPR009003 Peptidase S1, PA clan vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 Gene3D G3DSA:2.30.42.10 388 454 3.4E-16 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 Gene3D G3DSA:2.40.10.10 37 155 7.7E-34 T 11-11-2016 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 PRINTS PR00834 HtrA/DegQ protease family signature 102 114 1.7E-57 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 PRINTS PR00834 HtrA/DegQ protease family signature 221 238 1.7E-57 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 PRINTS PR00834 HtrA/DegQ protease family signature 307 319 1.7E-57 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 PRINTS PR00834 HtrA/DegQ protease family signature 123 143 1.7E-57 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 PRINTS PR00834 HtrA/DegQ protease family signature 164 188 1.7E-57 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 PRINTS PR00834 HtrA/DegQ protease family signature 199 216 1.7E-57 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 SMART SM00228 267 349 3.4E-16 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 SMART SM00228 374 447 1.0E-7 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 SUPERFAMILY SSF50156 383 454 3.29E-14 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 SUPERFAMILY SSF50156 225 350 2.76E-26 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 39 453 1.1E-165 T 11-11-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 Gene3D G3DSA:2.40.10.10 156 269 1.3E-44 T 11-11-2016 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 Gene3D G3DSA:2.30.42.10 270 364 4.1E-31 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 Pfam PF13180 PDZ domain 269 358 4.7E-18 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 Pfam PF13365 Trypsin-like peptidase domain 92 228 1.8E-31 T 11-11-2016 vm_RS12335 9c9526c687524b6e7e774af60e8fd65d 455 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 372 443 2.1E-10 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS08355 c6b045005132beb7c85c785dc036091f 483 SUPERFAMILY SSF109604 270 468 1.1E-33 T 11-11-2016 vm_RS08355 c6b045005132beb7c85c785dc036091f 483 SMART SM00471 289 439 2.0E-9 T 11-11-2016 IPR003607 HD/PDEase domain vm_RS08355 c6b045005132beb7c85c785dc036091f 483 SMART SM00304 217 269 0.0018 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08355 c6b045005132beb7c85c785dc036091f 483 Gene3D G3DSA:1.10.3210.10 288 473 1.0E-21 T 11-11-2016 IPR006674 HD domain vm_RS08355 c6b045005132beb7c85c785dc036091f 483 SUPERFAMILY SSF158472 224 267 1.96E-5 T 11-11-2016 vm_RS08355 c6b045005132beb7c85c785dc036091f 483 Pfam PF01966 HD domain 295 429 1.5E-17 T 11-11-2016 IPR006674 HD domain vm_RS06675 814e688e41e7456f165fd49d798286da 583 Pfam PF00072 Response regulator receiver domain 1 115 4.5E-19 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06675 814e688e41e7456f165fd49d798286da 583 SMART SM00421 523 580 5.3E-22 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS06675 814e688e41e7456f165fd49d798286da 583 ProSitePatterns PS00622 LuxR-type HTH domain signature. 540 567 - T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS06675 814e688e41e7456f165fd49d798286da 583 Pfam PF00196 Bacterial regulatory proteins, luxR family 525 579 1.1E-19 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS06675 814e688e41e7456f165fd49d798286da 583 Gene3D G3DSA:1.10.10.10 518 580 9.7E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS06675 814e688e41e7456f165fd49d798286da 583 SMART SM00448 1 115 1.0E-12 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06675 814e688e41e7456f165fd49d798286da 583 SMART SM00052 131 372 9.0E-69 T 11-11-2016 IPR001633 EAL domain vm_RS06675 814e688e41e7456f165fd49d798286da 583 Gene3D G3DSA:3.40.50.2300 1 125 4.1E-25 T 11-11-2016 vm_RS06675 814e688e41e7456f165fd49d798286da 583 SUPERFAMILY SSF141868 138 380 1.57E-73 T 11-11-2016 IPR001633 EAL domain vm_RS06675 814e688e41e7456f165fd49d798286da 583 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 556 568 7.0E-11 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS06675 814e688e41e7456f165fd49d798286da 583 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 526 540 7.0E-11 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS06675 814e688e41e7456f165fd49d798286da 583 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 540 556 7.0E-11 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS06675 814e688e41e7456f165fd49d798286da 583 SUPERFAMILY SSF46894 515 580 5.78E-18 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS06675 814e688e41e7456f165fd49d798286da 583 Gene3D G3DSA:3.40.50.2300 392 453 4.2E-4 T 11-11-2016 vm_RS06675 814e688e41e7456f165fd49d798286da 583 Gene3D G3DSA:3.20.20.450 137 379 8.9E-73 T 11-11-2016 IPR001633 EAL domain vm_RS06675 814e688e41e7456f165fd49d798286da 583 Pfam PF00563 EAL domain 137 367 5.4E-68 T 11-11-2016 IPR001633 EAL domain vm_RS06675 814e688e41e7456f165fd49d798286da 583 SUPERFAMILY SSF52172 1 127 7.4E-26 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS08445 a848c9d599cf726dd68b4030fb0ba1a5 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 423 3.5E-100 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit vm_RS08445 a848c9d599cf726dd68b4030fb0ba1a5 427 PIRSF PIRSF006066 1 426 1.4E-73 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 vm_RS08445 a848c9d599cf726dd68b4030fb0ba1a5 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 1.4E-106 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 vm_RS05795 1a8ae8f835cfcb33b56fca654da1e7d9 691 Pfam PF13307 Helicase C-terminal domain 526 684 9.7E-38 T 11-11-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 vm_RS05795 1a8ae8f835cfcb33b56fca654da1e7d9 691 Gene3D G3DSA:3.40.50.300 503 667 4.5E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05795 1a8ae8f835cfcb33b56fca654da1e7d9 691 SMART SM00491 535 671 1.1E-29 T 11-11-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 vm_RS05795 1a8ae8f835cfcb33b56fca654da1e7d9 691 Pfam PF06733 DEAD_2 195 263 8.6E-6 T 11-11-2016 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 vm_RS05795 1a8ae8f835cfcb33b56fca654da1e7d9 691 SUPERFAMILY SSF52540 645 666 1.16E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05795 1a8ae8f835cfcb33b56fca654da1e7d9 691 SUPERFAMILY SSF52540 511 610 1.16E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05795 1a8ae8f835cfcb33b56fca654da1e7d9 691 Gene3D G3DSA:3.40.50.300 212 253 4.2E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05795 1a8ae8f835cfcb33b56fca654da1e7d9 691 Gene3D G3DSA:3.40.50.300 47 131 4.2E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05795 1a8ae8f835cfcb33b56fca654da1e7d9 691 SUPERFAMILY SSF52540 207 263 7.66E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05795 1a8ae8f835cfcb33b56fca654da1e7d9 691 SUPERFAMILY SSF52540 630 666 7.66E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05795 1a8ae8f835cfcb33b56fca654da1e7d9 691 SUPERFAMILY SSF52540 16 123 7.66E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 Hamap MF_00696 Fatty acid metabolism regulator protein [fadR]. 1 279 139.369 T 11-11-2016 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 Pfam PF07840 FadR C-terminal domain 72 274 3.0E-68 T 11-11-2016 IPR028374 FadR, C-terminal domain GO:0000062|GO:0019217 vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 TIGRFAM TIGR02812 fadR_gamma: fatty acid metabolism transcriptional regulator FadR 2 276 3.9E-118 T 11-11-2016 IPR014178 Fatty acid response transcription factor FadR GO:0000062|GO:0003677|GO:0003700|GO:0019217 vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 SMART SM00345 12 71 1.6E-22 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 SUPERFAMILY SSF46785 12 74 7.76E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 Gene3D G3DSA:1.10.10.10 12 74 5.2E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 3.5E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 3.5E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 SUPERFAMILY SSF48008 178 270 3.4E-56 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 SUPERFAMILY SSF48008 79 137 3.4E-56 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 Gene3D G3DSA:1.20.120.530 178 278 4.9E-67 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 Gene3D G3DSA:1.20.120.530 80 137 4.9E-67 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal vm_RS05565 ea2e2d25e54116e2845abdab87cff615 279 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 71 3.0E-20 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS11410 f2b68c475f8e7119da7374507ce36953 112 Gene3D G3DSA:3.10.20.30 4 108 6.0E-35 T 11-11-2016 IPR012675 Beta-grasp domain vm_RS11410 f2b68c475f8e7119da7374507ce36953 112 PRINTS PR00355 Adrenodoxin signature 42 52 5.7E-10 T 11-11-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 vm_RS11410 f2b68c475f8e7119da7374507ce36953 112 PRINTS PR00355 Adrenodoxin signature 83 91 5.7E-10 T 11-11-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 vm_RS11410 f2b68c475f8e7119da7374507ce36953 112 PRINTS PR00355 Adrenodoxin signature 60 74 5.7E-10 T 11-11-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 vm_RS11410 f2b68c475f8e7119da7374507ce36953 112 SUPERFAMILY SSF54292 4 107 1.28E-33 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 vm_RS11410 f2b68c475f8e7119da7374507ce36953 112 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 91 3.4E-15 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 vm_RS11410 f2b68c475f8e7119da7374507ce36953 112 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 42 52 - T 11-11-2016 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 Reactome: R-HSA-1362409|Reactome: R-HSA-196108|Reactome: R-HSA-211976|Reactome: R-HSA-2395516|Reactome: R-HSA-5579026 vm_RS11410 f2b68c475f8e7119da7374507ce36953 112 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 110 5.2E-62 T 11-11-2016 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 Gene3D G3DSA:3.40.50.450 2 215 8.7E-75 T 11-11-2016 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 SUPERFAMILY SSF53784 3 315 2.88E-113 T 11-11-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 Pfam PF00365 Phosphofructokinase 4 276 5.0E-109 T 11-11-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 7 26 2.6E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 139 157 2.6E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 213 225 2.6E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 121 138 2.6E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 240 262 2.6E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 32 45 2.6E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 177 194 2.6E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 159 175 2.6E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 2.6E-83 T 11-11-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 ProSitePatterns PS00433 Phosphofructokinase signature. 244 262 - T 11-11-2016 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 PIRSF PIRSF000532 1 320 2.4E-129 T 11-11-2016 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 4 301 1.3E-130 T 11-11-2016 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 vm_RS01525 f43801afaf4242b5d0e84515b74c624b 320 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 2 320 47.496 T 11-11-2016 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 vm_RS00045 857ca8c4f0ee7e3030fc9781ca3fddcc 688 Pfam PF05746 DALR anticodon binding domain 580 677 7.7E-10 T 11-11-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 vm_RS00045 857ca8c4f0ee7e3030fc9781ca3fddcc 688 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 5 549 3.0E-204 T 11-11-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00045 857ca8c4f0ee7e3030fc9781ca3fddcc 688 Gene3D G3DSA:1.10.730.10 582 676 9.0E-6 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS00045 857ca8c4f0ee7e3030fc9781ca3fddcc 688 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 2 686 25.872 T 11-11-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00045 857ca8c4f0ee7e3030fc9781ca3fddcc 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 49 61 5.8E-36 T 11-11-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00045 857ca8c4f0ee7e3030fc9781ca3fddcc 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 317 333 5.8E-36 T 11-11-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00045 857ca8c4f0ee7e3030fc9781ca3fddcc 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 245 260 5.8E-36 T 11-11-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00045 857ca8c4f0ee7e3030fc9781ca3fddcc 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 393 412 5.8E-36 T 11-11-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00045 857ca8c4f0ee7e3030fc9781ca3fddcc 688 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 6 19 5.8E-36 T 11-11-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00045 857ca8c4f0ee7e3030fc9781ca3fddcc 688 SUPERFAMILY SSF109604 348 488 2.93E-12 T 11-11-2016 vm_RS00045 857ca8c4f0ee7e3030fc9781ca3fddcc 688 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 3 687 8.3E-294 T 11-11-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS01785 18e016adb0209050d8c95fdd959d0c52 571 PRINTS PR00811 Bacterial general secretion pathway protein D signature 442 452 4.5E-20 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS01785 18e016adb0209050d8c95fdd959d0c52 571 PRINTS PR00811 Bacterial general secretion pathway protein D signature 557 571 4.5E-20 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS01785 18e016adb0209050d8c95fdd959d0c52 571 PRINTS PR00811 Bacterial general secretion pathway protein D signature 320 330 4.5E-20 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS01785 18e016adb0209050d8c95fdd959d0c52 571 PRINTS PR00811 Bacterial general secretion pathway protein D signature 407 431 4.5E-20 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS01785 18e016adb0209050d8c95fdd959d0c52 571 PRINTS PR00811 Bacterial general secretion pathway protein D signature 534 552 4.5E-20 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS01785 18e016adb0209050d8c95fdd959d0c52 571 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 515 548 - T 11-11-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 vm_RS01785 18e016adb0209050d8c95fdd959d0c52 571 Pfam PF00263 Bacterial type II and III secretion system protein 411 569 6.1E-46 T 11-11-2016 IPR004846 Type II/III secretion system GO:0009306 vm_RS01785 18e016adb0209050d8c95fdd959d0c52 571 TIGRFAM TIGR02515 IV_pilus_PilQ: type IV pilus secretin PilQ 156 569 7.6E-161 T 11-11-2016 IPR013355 Type IV pilus secretin PilQ GO:0009297|GO:0009306 vm_RS01785 18e016adb0209050d8c95fdd959d0c52 571 SMART SM00965 181 229 1.6E-9 T 11-11-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 vm_RS01785 18e016adb0209050d8c95fdd959d0c52 571 Pfam PF07660 Secretin and TonB N terminus short domain 181 229 3.2E-7 T 11-11-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 vm_RS01785 18e016adb0209050d8c95fdd959d0c52 571 Pfam PF03958 Bacterial type II/III secretion system short domain 255 320 3.5E-12 T 11-11-2016 IPR005644 NolW-like vm_RS11430 bdc0803d80de41cd33254c1bfd1d638c 127 Gene3D G3DSA:3.90.1010.10 2 126 1.4E-56 T 11-11-2016 vm_RS11430 bdc0803d80de41cd33254c1bfd1d638c 127 SUPERFAMILY SSF82649 1 125 2.49E-48 T 11-11-2016 vm_RS11430 bdc0803d80de41cd33254c1bfd1d638c 127 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 1.4E-69 T 11-11-2016 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 vm_RS11430 bdc0803d80de41cd33254c1bfd1d638c 127 Pfam PF01592 NifU-like N terminal domain 2 125 4.9E-57 T 11-11-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 vm_RS11670 b46ec7cd7b45e27c5ebc5876863f1e44 791 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 338 506 1.1E-32 T 11-11-2016 IPR000160 GGDEF domain vm_RS11670 b46ec7cd7b45e27c5ebc5876863f1e44 791 Pfam PF00672 HAMP domain 264 329 6.1E-7 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS11670 b46ec7cd7b45e27c5ebc5876863f1e44 791 Gene3D G3DSA:3.20.20.450 521 767 3.9E-70 T 11-11-2016 IPR001633 EAL domain vm_RS11670 b46ec7cd7b45e27c5ebc5876863f1e44 791 SMART SM00267 328 507 3.2E-44 T 11-11-2016 IPR000160 GGDEF domain vm_RS11670 b46ec7cd7b45e27c5ebc5876863f1e44 791 Pfam PF00563 EAL domain 523 755 2.0E-61 T 11-11-2016 IPR001633 EAL domain vm_RS11670 b46ec7cd7b45e27c5ebc5876863f1e44 791 Pfam PF00990 Diguanylate cyclase, GGDEF domain 340 503 9.9E-38 T 11-11-2016 IPR000160 GGDEF domain vm_RS11670 b46ec7cd7b45e27c5ebc5876863f1e44 791 SMART SM00052 517 760 2.9E-74 T 11-11-2016 IPR001633 EAL domain vm_RS11670 b46ec7cd7b45e27c5ebc5876863f1e44 791 SUPERFAMILY SSF55073 344 508 6.67E-38 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS11670 b46ec7cd7b45e27c5ebc5876863f1e44 791 Gene3D G3DSA:3.30.70.270 342 513 3.6E-43 T 11-11-2016 vm_RS11670 b46ec7cd7b45e27c5ebc5876863f1e44 791 SUPERFAMILY SSF141868 522 769 8.37E-68 T 11-11-2016 IPR001633 EAL domain vm_RS06190 2f527fea25061ab54de5b0119e4c3e54 270 SUPERFAMILY SSF51445 10 145 2.22E-29 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS06190 2f527fea25061ab54de5b0119e4c3e54 270 Pfam PF02929 Beta galactosidase small chain 184 263 5.6E-5 T 11-11-2016 IPR004199 Beta galactosidase small chain/ domain 5 GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 vm_RS06190 2f527fea25061ab54de5b0119e4c3e54 270 SUPERFAMILY SSF74650 209 265 1.15E-6 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 vm_RS06190 2f527fea25061ab54de5b0119e4c3e54 270 Pfam PF02836 Glycosyl hydrolases family 2, TIM barrel domain 26 149 1.4E-28 T 11-11-2016 IPR006103 Glycoside hydrolase family 2, catalytic domain GO:0004553|GO:0005975 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 vm_RS06190 2f527fea25061ab54de5b0119e4c3e54 270 Gene3D G3DSA:2.60.40.320 159 212 4.9E-10 T 11-11-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 vm_RS06190 2f527fea25061ab54de5b0119e4c3e54 270 Gene3D G3DSA:2.70.98.10 213 265 4.1E-8 T 11-11-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 vm_RS06190 2f527fea25061ab54de5b0119e4c3e54 270 Gene3D G3DSA:3.20.20.80 23 143 1.4E-33 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS06190 2f527fea25061ab54de5b0119e4c3e54 270 SUPERFAMILY SSF49303 160 216 2.3E-9 T 11-11-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 Gene3D G3DSA:1.10.8.60 318 417 2.6E-37 T 11-11-2016 vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 319 396 2.2E-15 T 11-11-2016 IPR019489 Clp ATPase, C-terminal vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 12 414 5.7E-210 T 11-11-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 Gene3D G3DSA:3.40.50.300 296 312 1.3E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 Gene3D G3DSA:3.40.50.300 66 255 1.3E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 SUPERFAMILY SSF52540 65 404 2.23E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 417 53.21 T 11-11-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 SUPERFAMILY SSF57716 14 49 5.84E-12 T 11-11-2016 vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 SMART SM00994 13 52 1.0E-24 T 11-11-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 Pfam PF07724 AAA domain (Cdc48 subfamily) 114 312 5.9E-49 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 SMART SM00382 113 266 1.6E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 SMART SM01086 319 414 9.0E-33 T 11-11-2016 IPR019489 Clp ATPase, C-terminal vm_RS05315 6f648ed5e9924e034df3960c76dbbf57 426 Pfam PF06689 ClpX C4-type zinc finger 14 51 3.0E-21 T 11-11-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 vm_RS06470 8067ee633c2c3f273157f5c864d07227 280 Gene3D G3DSA:1.20.1080.10 30 279 3.2E-88 T 11-11-2016 IPR023271 Aquaporin-like Reactome: R-HSA-432047 vm_RS06470 8067ee633c2c3f273157f5c864d07227 280 ProSitePatterns PS01006 Formate and nitrite transporters signature 2. 167 177 - T 11-11-2016 IPR024002 Formate/nitrite transporter, conserved site vm_RS06470 8067ee633c2c3f273157f5c864d07227 280 TIGRFAM TIGR00790 fnt: formate/nitrite transporter 25 279 1.2E-80 T 11-11-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 vm_RS06470 8067ee633c2c3f273157f5c864d07227 280 TIGRFAM TIGR04060 formate_focA: formate transporter FocA 13 278 1.0E-111 T 11-11-2016 IPR023999 Formate transporter FocA, putative GO:0015499|GO:0015724|GO:0016021 vm_RS06470 8067ee633c2c3f273157f5c864d07227 280 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 82 91 - T 11-11-2016 IPR024002 Formate/nitrite transporter, conserved site vm_RS06470 8067ee633c2c3f273157f5c864d07227 280 Pfam PF01226 Formate/nitrite transporter 14 275 1.0E-76 T 11-11-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 vm_RS13765 ea3ab3d59116ac343651547bf9509594 156 Gene3D G3DSA:1.10.455.10 8 156 4.7E-69 T 11-11-2016 IPR023798 Ribosomal protein S7 domain vm_RS13765 ea3ab3d59116ac343651547bf9509594 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 4.1E-66 T 11-11-2016 IPR023798 Ribosomal protein S7 domain vm_RS13765 ea3ab3d59116ac343651547bf9509594 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 1.6E-71 T 11-11-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 vm_RS13765 ea3ab3d59116ac343651547bf9509594 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 11-11-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS13765 ea3ab3d59116ac343651547bf9509594 156 SUPERFAMILY SSF47973 6 149 1.7E-60 T 11-11-2016 IPR023798 Ribosomal protein S7 domain vm_RS13765 ea3ab3d59116ac343651547bf9509594 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 35.981 T 11-11-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 vm_RS13765 ea3ab3d59116ac343651547bf9509594 156 PIRSF PIRSF002122 3 156 1.0E-63 T 11-11-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 vm_RS05645 2b87f24b1187dd693a3b2f22bc2c5474 414 Pfam PF02687 FtsX-like permease family 274 407 8.1E-20 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 vm_RS05645 2b87f24b1187dd693a3b2f22bc2c5474 414 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 413 1.8E-155 T 11-11-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 vm_RS05645 2b87f24b1187dd693a3b2f22bc2c5474 414 TIGRFAM TIGR02213 lolE_release: lipoprotein releasing system, transmembrane protein LolE 4 414 3.1E-207 T 11-11-2016 IPR011926 Lipoprotein-releasing system transmembrane protein LolC/E, gammaproteobacteria type GO:0006810|GO:0009276|GO:0016021 vm_RS05645 2b87f24b1187dd693a3b2f22bc2c5474 414 Pfam PF12704 MacB-like periplasmic core domain 30 241 3.5E-13 T 11-11-2016 IPR025857 MacB-like periplasmic core domain vm_RS09010 a7147cf118d10f3d91c2e6877ca3a675 153 SMART SM01321 11 129 7.8E-40 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS09010 a7147cf118d10f3d91c2e6877ca3a675 153 Pfam PF01797 Transposase IS200 like 12 129 5.3E-37 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS09010 a7147cf118d10f3d91c2e6877ca3a675 153 SUPERFAMILY SSF143422 1 129 4.71E-47 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS09010 a7147cf118d10f3d91c2e6877ca3a675 153 Gene3D G3DSA:3.30.70.1290 3 132 6.8E-56 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS09150 a7147cf118d10f3d91c2e6877ca3a675 153 SMART SM01321 11 129 7.8E-40 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS09150 a7147cf118d10f3d91c2e6877ca3a675 153 Pfam PF01797 Transposase IS200 like 12 129 5.3E-37 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS09150 a7147cf118d10f3d91c2e6877ca3a675 153 SUPERFAMILY SSF143422 1 129 4.71E-47 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS09150 a7147cf118d10f3d91c2e6877ca3a675 153 Gene3D G3DSA:3.30.70.1290 3 132 6.8E-56 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS05340 a7147cf118d10f3d91c2e6877ca3a675 153 SMART SM01321 11 129 7.8E-40 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS05340 a7147cf118d10f3d91c2e6877ca3a675 153 Pfam PF01797 Transposase IS200 like 12 129 5.3E-37 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS05340 a7147cf118d10f3d91c2e6877ca3a675 153 SUPERFAMILY SSF143422 1 129 4.71E-47 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS05340 a7147cf118d10f3d91c2e6877ca3a675 153 Gene3D G3DSA:3.30.70.1290 3 132 6.8E-56 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS14940 0af5257ed1d3d178d48ab609da7df923 548 Gene3D G3DSA:3.40.50.300 233 343 1.3E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14940 0af5257ed1d3d178d48ab609da7df923 548 Gene3D G3DSA:3.40.50.300 466 529 1.3E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14940 0af5257ed1d3d178d48ab609da7df923 548 Pfam PF13361 UvrD-like helicase C-terminal domain 226 374 3.2E-10 T 11-11-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 vm_RS14940 0af5257ed1d3d178d48ab609da7df923 548 Pfam PF13361 UvrD-like helicase C-terminal domain 442 522 5.1E-13 T 11-11-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 vm_RS14940 0af5257ed1d3d178d48ab609da7df923 548 SUPERFAMILY SSF52540 13 376 4.26E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14940 0af5257ed1d3d178d48ab609da7df923 548 SUPERFAMILY SSF52540 418 525 4.26E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14940 0af5257ed1d3d178d48ab609da7df923 548 Gene3D G3DSA:3.40.50.300 21 232 1.7E-36 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14940 0af5257ed1d3d178d48ab609da7df923 548 Pfam PF00580 UvrD/REP helicase N-terminal domain 119 219 8.9E-18 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 vm_RS14940 0af5257ed1d3d178d48ab609da7df923 548 Pfam PF00580 UvrD/REP helicase N-terminal domain 26 107 5.4E-11 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 vm_RS13170 9f53d4729ea9a898abc0db5f1cba9dc0 284 PRINTS PR00625 DnaJ domain signature 238 253 2.5E-12 T 11-11-2016 IPR001623 DnaJ domain vm_RS13170 9f53d4729ea9a898abc0db5f1cba9dc0 284 PRINTS PR00625 DnaJ domain signature 220 238 2.5E-12 T 11-11-2016 IPR001623 DnaJ domain vm_RS13170 9f53d4729ea9a898abc0db5f1cba9dc0 284 PRINTS PR00625 DnaJ domain signature 262 282 2.5E-12 T 11-11-2016 IPR001623 DnaJ domain vm_RS13170 9f53d4729ea9a898abc0db5f1cba9dc0 284 Pfam PF00226 DnaJ domain 218 280 8.6E-15 T 11-11-2016 IPR001623 DnaJ domain vm_RS13170 9f53d4729ea9a898abc0db5f1cba9dc0 284 SMART SM00271 217 282 4.6E-22 T 11-11-2016 IPR001623 DnaJ domain vm_RS13170 9f53d4729ea9a898abc0db5f1cba9dc0 284 Gene3D G3DSA:1.10.287.110 222 280 1.1E-17 T 11-11-2016 IPR001623 DnaJ domain vm_RS13170 9f53d4729ea9a898abc0db5f1cba9dc0 284 SUPERFAMILY SSF158682 48 181 3.4E-23 T 11-11-2016 IPR029024 TerB-like vm_RS13170 9f53d4729ea9a898abc0db5f1cba9dc0 284 Pfam PF05099 Tellurite resistance protein TerB 44 177 2.7E-19 T 11-11-2016 IPR007791 Co-chaperone DjlA, N-terminal vm_RS13170 9f53d4729ea9a898abc0db5f1cba9dc0 284 Hamap MF_01153 Co-chaperone protein DjlA [djlA]. 3 283 40.171 T 11-11-2016 IPR023749 Co-chaperone DjlA GO:0051087 vm_RS13170 9f53d4729ea9a898abc0db5f1cba9dc0 284 SUPERFAMILY SSF46565 138 280 3.35E-34 T 11-11-2016 IPR001623 DnaJ domain vm_RS13170 9f53d4729ea9a898abc0db5f1cba9dc0 284 Gene3D G3DSA:1.10.3680.10 20 221 1.7E-40 T 11-11-2016 IPR029024 TerB-like vm_RS08135 29477f717508105334e82d2aec87f31a 868 Pfam PF00694 Aconitase C-terminal domain 665 796 5.9E-31 T 11-11-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 Pfam PF00330 Aconitase family (aconitate hydratase) 74 542 1.5E-149 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 SUPERFAMILY SSF53732 27 600 3.79E-187 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 Gene3D G3DSA:3.40.1060.10 242 359 2.2E-34 T 11-11-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 SUPERFAMILY SSF52016 607 865 5.1E-67 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel vm_RS08135 29477f717508105334e82d2aec87f31a 868 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 2 867 0.0 T 11-11-2016 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 vm_RS08135 29477f717508105334e82d2aec87f31a 868 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 34 864 4.1E-291 T 11-11-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 vm_RS08135 29477f717508105334e82d2aec87f31a 868 Gene3D G3DSA:3.30.499.10 26 240 3.4E-60 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 Gene3D G3DSA:3.30.499.10 360 554 2.4E-56 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 Gene3D G3DSA:3.20.19.10 614 865 3.2E-63 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel vm_RS08135 29477f717508105334e82d2aec87f31a 868 PRINTS PR00415 Aconitase family signature 195 208 1.0E-25 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 PRINTS PR00415 Aconitase family signature 209 224 1.0E-25 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 PRINTS PR00415 Aconitase family signature 411 422 1.0E-25 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 PRINTS PR00415 Aconitase family signature 142 155 1.0E-25 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 PRINTS PR00415 Aconitase family signature 166 174 1.0E-25 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 PRINTS PR00415 Aconitase family signature 271 284 1.0E-25 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 PRINTS PR00415 Aconitase family signature 285 298 1.0E-25 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 PRINTS PR00415 Aconitase family signature 473 486 1.0E-25 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS08135 29477f717508105334e82d2aec87f31a 868 PRINTS PR00415 Aconitase family signature 364 378 1.0E-25 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS14575 9641159f222575184a023c8cdba60297 611 SMART SM00487 25 221 5.1E-29 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS14575 9641159f222575184a023c8cdba60297 611 Gene3D G3DSA:1.10.10.10 348 517 1.7E-63 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS14575 9641159f222575184a023c8cdba60297 611 SMART SM00341 533 609 8.2E-23 T 11-11-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 vm_RS14575 9641159f222575184a023c8cdba60297 611 Pfam PF00271 Helicase conserved C-terminal domain 230 334 1.3E-19 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS14575 9641159f222575184a023c8cdba60297 611 SMART SM00956 414 517 1.4E-50 T 11-11-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 vm_RS14575 9641159f222575184a023c8cdba60297 611 SUPERFAMILY SSF47819 534 608 1.02E-25 T 11-11-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 vm_RS14575 9641159f222575184a023c8cdba60297 611 SUPERFAMILY SSF52540 17 202 1.05E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14575 9641159f222575184a023c8cdba60297 611 SMART SM00490 253 334 2.2E-29 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS14575 9641159f222575184a023c8cdba60297 611 SUPERFAMILY SSF52540 211 457 1.48E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14575 9641159f222575184a023c8cdba60297 611 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 19 466 5.9E-191 T 11-11-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 vm_RS14575 9641159f222575184a023c8cdba60297 611 Gene3D G3DSA:3.40.50.300 210 347 7.9E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14575 9641159f222575184a023c8cdba60297 611 Gene3D G3DSA:1.10.150.80 534 605 8.3E-23 T 11-11-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 vm_RS14575 9641159f222575184a023c8cdba60297 611 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 18 606 9.6E-258 T 11-11-2016 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 vm_RS14575 9641159f222575184a023c8cdba60297 611 Pfam PF00270 DEAD/DEAH box helicase 33 188 9.1E-19 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 vm_RS14575 9641159f222575184a023c8cdba60297 611 Pfam PF00570 HRDC domain 537 603 8.4E-23 T 11-11-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 vm_RS14575 9641159f222575184a023c8cdba60297 611 Pfam PF09382 RQC domain 409 517 3.6E-38 T 11-11-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 Reactome: R-HSA-3108214|Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473 vm_RS14575 9641159f222575184a023c8cdba60297 611 Gene3D G3DSA:3.40.50.300 17 207 9.1E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14575 9641159f222575184a023c8cdba60297 611 Pfam PF16124 RecQ zinc-binding 346 407 1.0E-17 T 11-11-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain vm_RS06760 0b3a9b180a9a1b40f579f2fceb6a11b7 219 SUPERFAMILY SSF52172 1 118 5.83E-36 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS06760 0b3a9b180a9a1b40f579f2fceb6a11b7 219 Gene3D G3DSA:3.40.50.2300 1 120 5.5E-33 T 11-11-2016 vm_RS06760 0b3a9b180a9a1b40f579f2fceb6a11b7 219 SMART SM00448 1 112 3.0E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06760 0b3a9b180a9a1b40f579f2fceb6a11b7 219 Pfam PF00072 Response regulator receiver domain 3 113 2.1E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06760 0b3a9b180a9a1b40f579f2fceb6a11b7 219 SMART SM00862 145 216 3.2E-23 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS06760 0b3a9b180a9a1b40f579f2fceb6a11b7 219 SUPERFAMILY SSF46894 119 217 7.37E-27 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS06760 0b3a9b180a9a1b40f579f2fceb6a11b7 219 Gene3D G3DSA:1.10.10.10 122 218 8.1E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS06760 0b3a9b180a9a1b40f579f2fceb6a11b7 219 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 2.0E-22 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS01180 2509d765bb7451ca40e8929d15f3e601 88 Pfam PF13937 Domain of unknown function (DUF4212) 9 85 2.3E-34 T 11-11-2016 IPR019886 Sodium symporter small subunit, predicted vm_RS01180 2509d765bb7451ca40e8929d15f3e601 88 TIGRFAM TIGR03647 Na_symport_sm: putative solute:sodium symporter small subunit 11 87 4.7E-35 T 11-11-2016 IPR019886 Sodium symporter small subunit, predicted vm_RS09590 91cb83aff4f8fad0a4090a6ec1395caf 255 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS09590 91cb83aff4f8fad0a4090a6ec1395caf 255 SMART SM00382 26 223 2.2E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS09590 91cb83aff4f8fad0a4090a6ec1395caf 255 SUPERFAMILY SSF52540 4 233 1.89E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09590 91cb83aff4f8fad0a4090a6ec1395caf 255 Gene3D G3DSA:3.40.50.300 6 231 3.7E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09590 91cb83aff4f8fad0a4090a6ec1395caf 255 Pfam PF00005 ABC transporter 18 166 2.0E-32 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS00490 5aacd19b43fac71ed4372902c14452a1 347 Pfam PF00490 Delta-aminolevulinic acid dehydratase 12 332 2.4E-142 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00490 5aacd19b43fac71ed4372902c14452a1 347 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 198 217 1.2E-57 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00490 5aacd19b43fac71ed4372902c14452a1 347 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 129 143 1.2E-57 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00490 5aacd19b43fac71ed4372902c14452a1 347 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 307 326 1.2E-57 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00490 5aacd19b43fac71ed4372902c14452a1 347 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 252 268 1.2E-57 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00490 5aacd19b43fac71ed4372902c14452a1 347 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 277 292 1.2E-57 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00490 5aacd19b43fac71ed4372902c14452a1 347 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 160 179 1.2E-57 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00490 5aacd19b43fac71ed4372902c14452a1 347 SUPERFAMILY SSF51569 7 335 1.76E-145 T 11-11-2016 vm_RS00490 5aacd19b43fac71ed4372902c14452a1 347 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 252 264 - T 11-11-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00490 5aacd19b43fac71ed4372902c14452a1 347 SMART SM01004 9 333 2.8E-246 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00490 5aacd19b43fac71ed4372902c14452a1 347 PIRSF PIRSF001415 2 336 2.5E-152 T 11-11-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00490 5aacd19b43fac71ed4372902c14452a1 347 Gene3D G3DSA:3.20.20.70 7 336 1.7E-154 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 7 520 2.1E-213 T 11-11-2016 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 Pfam PF02910 Fumarate reductase flavoprotein C-term 441 522 9.5E-15 T 11-11-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 Gene3D G3DSA:3.50.50.60 349 411 1.3E-103 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 Gene3D G3DSA:3.50.50.60 3 243 1.3E-103 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 370 377 2.7E-7 T 11-11-2016 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 10 32 2.7E-7 T 11-11-2016 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 SUPERFAMILY SSF51905 356 447 9.58E-77 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 SUPERFAMILY SSF51905 4 255 9.58E-77 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 Pfam PF00890 FAD binding domain 10 392 3.9E-104 T 11-11-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 8.9E-9 T 11-11-2016 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 11 30 8.9E-9 T 11-11-2016 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 SUPERFAMILY SSF46977 426 523 3.79E-31 T 11-11-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 Gene3D G3DSA:1.20.58.100 420 522 1.1E-33 T 11-11-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 Gene3D G3DSA:3.90.700.10 244 348 1.8E-38 T 11-11-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS02615 405a00f1806d5a4ac38e92b9af87bf29 535 SUPERFAMILY SSF56425 238 353 5.38E-42 T 11-11-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 Pfam PF00512 His Kinase A (phospho-acceptor) domain 460 525 3.4E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 SMART SM00091 873 938 0.0027 T 11-11-2016 IPR000014 PAS domain vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 Pfam PF00072 Response regulator receiver domain 725 835 5.1E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 SUPERFAMILY SSF47384 446 527 1.96E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 SUPERFAMILY SSF52172 717 846 2.56E-41 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 SUPERFAMILY SSF55785 861 933 4.95E-7 T 11-11-2016 IPR000014 PAS domain vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 SUPERFAMILY SSF158472 378 428 7.98E-11 T 11-11-2016 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 SMART SM00387 573 684 2.2E-38 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 Gene3D G3DSA:1.10.287.130 452 512 7.9E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 Pfam PF13188 PAS domain 879 914 6.6E-4 T 11-11-2016 IPR000014 PAS domain vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 Gene3D G3DSA:3.30.450.20 233 353 4.0E-4 T 11-11-2016 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 SMART SM00388 459 527 4.6E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 Gene3D G3DSA:3.30.565.10 513 687 2.4E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 SUPERFAMILY SSF55874 516 688 2.62E-46 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 Gene3D G3DSA:3.30.450.20 868 927 7.5E-8 T 11-11-2016 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 SMART SM00448 722 835 1.3E-45 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 Gene3D G3DSA:3.40.50.2300 721 843 2.5E-42 T 11-11-2016 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 SMART SM00304 377 430 4.8E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 Pfam PF00672 HAMP domain 358 427 1.9E-15 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 574 683 7.1E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 PRINTS PR00344 Bacterial sensor protein C-terminal signature 627 637 1.3E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 PRINTS PR00344 Bacterial sensor protein C-terminal signature 609 623 1.3E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 PRINTS PR00344 Bacterial sensor protein C-terminal signature 668 681 1.3E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS12090 375fd65db487b97604da9e12aa4a25e9 1129 PRINTS PR00344 Bacterial sensor protein C-terminal signature 644 662 1.3E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS03525 ee9a5413689872a531e22f4b14002cb2 154 SUPERFAMILY SSF53271 5 147 4.26E-30 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS03525 ee9a5413689872a531e22f4b14002cb2 154 Gene3D G3DSA:3.40.50.2020 1 147 1.6E-42 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS03525 ee9a5413689872a531e22f4b14002cb2 154 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 1 153 40.038 T 11-11-2016 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 vm_RS03525 ee9a5413689872a531e22f4b14002cb2 154 Pfam PF00156 Phosphoribosyl transferase domain 27 142 1.1E-15 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 vm_RS02045 fa2b6ea283a1d2ae93ee95c140b5adcb 58 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 22.06 T 11-11-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 vm_RS02045 fa2b6ea283a1d2ae93ee95c140b5adcb 58 SUPERFAMILY SSF55129 1 58 1.83E-23 T 11-11-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain vm_RS02045 fa2b6ea283a1d2ae93ee95c140b5adcb 58 Gene3D G3DSA:3.30.1390.20 1 58 4.5E-33 T 11-11-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain vm_RS02045 fa2b6ea283a1d2ae93ee95c140b5adcb 58 ProSitePatterns PS00634 Ribosomal protein L30 signature. 22 54 - T 11-11-2016 IPR018038 Ribosomal protein L30, conserved site vm_RS02045 fa2b6ea283a1d2ae93ee95c140b5adcb 58 Pfam PF00327 Ribosomal protein L30p/L7e 4 54 2.5E-21 T 11-11-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain vm_RS02045 fa2b6ea283a1d2ae93ee95c140b5adcb 58 PIRSF PIRSF002211 1 58 1.0E-28 T 11-11-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 vm_RS02045 fa2b6ea283a1d2ae93ee95c140b5adcb 58 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 58 9.1E-27 T 11-11-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 vm_RS12385 4608a8a67d7c6af6b93712f320257427 524 SUPERFAMILY SSF55931 9 513 2.94E-203 T 11-11-2016 vm_RS12385 4608a8a67d7c6af6b93712f320257427 524 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 524 225.182 T 11-11-2016 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 vm_RS12385 4608a8a67d7c6af6b93712f320257427 524 Pfam PF04262 Glutamate-cysteine ligase 14 378 1.6E-168 T 11-11-2016 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 vm_RS12385 4608a8a67d7c6af6b93712f320257427 524 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 8 515 2.5E-216 T 11-11-2016 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 vm_RS09485 00c8ecf6e0304412969fb47e03e217f6 284 Gene3D G3DSA:3.20.20.70 1 284 8.2E-113 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS09485 00c8ecf6e0304412969fb47e03e217f6 284 Pfam PF01116 Fructose-bisphosphate aldolase class-II 6 283 4.4E-100 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 vm_RS09485 00c8ecf6e0304412969fb47e03e217f6 284 TIGRFAM TIGR01858 tag_bisphos_ald: class II aldolase, tagatose bisphosphate family 3 283 7.7E-151 T 11-11-2016 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY GO:0005975|GO:0008270|GO:0009025 KEGG: 00052+4.1.2.40|MetaCyc: PWY-7077|MetaCyc: PWY-7395 vm_RS09485 00c8ecf6e0304412969fb47e03e217f6 284 SUPERFAMILY SSF51569 3 283 3.22E-101 T 11-11-2016 vm_RS09485 00c8ecf6e0304412969fb47e03e217f6 284 PIRSF PIRSF001359 1 284 4.4E-111 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 vm_RS09485 00c8ecf6e0304412969fb47e03e217f6 284 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 131 142 - T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 vm_RS09485 00c8ecf6e0304412969fb47e03e217f6 284 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 283 1.1E-102 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 vm_RS02660 4ff7f930e2db1874eb61f51eee8961d6 324 Gene3D G3DSA:3.30.300.20 216 317 1.2E-38 T 11-11-2016 IPR015946 K homology domain-like, alpha/beta vm_RS02660 4ff7f930e2db1874eb61f51eee8961d6 324 Hamap MF_00367 GTPase Era [era]. 28 320 35.492 T 11-11-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 vm_RS02660 4ff7f930e2db1874eb61f51eee8961d6 324 TIGRFAM TIGR00436 era: GTP-binding protein Era 31 303 4.8E-110 T 11-11-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 vm_RS02660 4ff7f930e2db1874eb61f51eee8961d6 324 SUPERFAMILY SSF52540 33 228 5.47E-46 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02660 4ff7f930e2db1874eb61f51eee8961d6 324 Gene3D G3DSA:3.40.50.300 27 215 1.7E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02660 4ff7f930e2db1874eb61f51eee8961d6 324 SUPERFAMILY SSF54814 204 320 1.47E-40 T 11-11-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 vm_RS02660 4ff7f930e2db1874eb61f51eee8961d6 324 Pfam PF01926 50S ribosome-binding GTPase 33 147 2.3E-23 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS02660 4ff7f930e2db1874eb61f51eee8961d6 324 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 30 190 3.8E-38 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS02660 4ff7f930e2db1874eb61f51eee8961d6 324 Pfam PF07650 KH domain 231 308 9.0E-20 T 11-11-2016 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS05545 ccd3fac7cf123c12c8a80f296145e2bf 164 SMART SM00344 12 121 2.3E-54 T 11-11-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 vm_RS05545 ccd3fac7cf123c12c8a80f296145e2bf 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 6.2E-23 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS05545 ccd3fac7cf123c12c8a80f296145e2bf 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 6.2E-23 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS05545 ccd3fac7cf123c12c8a80f296145e2bf 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 6.2E-23 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS05545 ccd3fac7cf123c12c8a80f296145e2bf 164 Gene3D G3DSA:3.30.70.920 65 161 7.8E-33 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain vm_RS05545 ccd3fac7cf123c12c8a80f296145e2bf 164 Gene3D G3DSA:1.10.10.10 13 64 1.1E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05545 ccd3fac7cf123c12c8a80f296145e2bf 164 SUPERFAMILY SSF54909 74 158 7.24E-22 T 11-11-2016 IPR011008 Dimeric alpha-beta barrel vm_RS05545 ccd3fac7cf123c12c8a80f296145e2bf 164 Pfam PF01037 Lrp/AsnC ligand binding domain 78 152 1.4E-23 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain vm_RS05545 ccd3fac7cf123c12c8a80f296145e2bf 164 SUPERFAMILY SSF46785 12 70 3.07E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05545 ccd3fac7cf123c12c8a80f296145e2bf 164 Pfam PF13412 Winged helix-turn-helix DNA-binding 12 59 2.1E-21 T 11-11-2016 vm_RS05545 ccd3fac7cf123c12c8a80f296145e2bf 164 ProSitePatterns PS00519 AsnC-type HTH domain signature. 30 56 - T 11-11-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site vm_RS12550 cfe1cdade8c1d1218d1e3fb7c59938b9 232 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 101 108 - T 11-11-2016 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 vm_RS12550 cfe1cdade8c1d1218d1e3fb7c59938b9 232 SUPERFAMILY SSF53448 3 226 1.15E-62 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS12550 cfe1cdade8c1d1218d1e3fb7c59938b9 232 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 3 228 31.34 T 11-11-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 vm_RS12550 cfe1cdade8c1d1218d1e3fb7c59938b9 232 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 225 4.8E-73 T 11-11-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 vm_RS12550 cfe1cdade8c1d1218d1e3fb7c59938b9 232 Gene3D G3DSA:3.90.550.10 1 230 8.8E-76 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS12550 cfe1cdade8c1d1218d1e3fb7c59938b9 232 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 4 226 9.7E-79 T 11-11-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 Pfam PF08461 Ribonuclease R winged-helix domain 26 88 2.2E-12 T 11-11-2016 IPR013668 Ribonuclease R winged-helix domain vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 TIGRFAM TIGR02063 RNase_R: ribonuclease R 23 734 9.2E-273 T 11-11-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 Pfam PF08206 Ribonuclease B OB domain 91 151 1.4E-20 T 11-11-2016 IPR013223 Ribonuclease B, N-terminal OB domain vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 71 733 3.8E-254 T 11-11-2016 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 Pfam PF00575 S1 RNA binding domain 650 731 5.2E-14 T 11-11-2016 IPR003029 S1 domain GO:0003676 vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 Pfam PF00773 RNB domain 267 594 5.3E-106 T 11-11-2016 vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 SMART SM00955 267 595 2.2E-186 T 11-11-2016 vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 Gene3D G3DSA:2.40.50.140 652 736 1.5E-22 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 SMART SM00357 90 152 7.3E-12 T 11-11-2016 IPR011129 Cold shock protein GO:0003676 vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 SMART SM00316 650 733 9.9E-15 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 SUPERFAMILY SSF50249 145 244 3.3E-16 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 Hamap MF_01895 Ribonuclease R [rnr]. 42 733 60.007 T 11-11-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 SUPERFAMILY SSF50249 651 744 4.7E-23 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 SUPERFAMILY SSF50249 71 154 9.36E-16 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 ProSitePatterns PS01175 Ribonuclease II family signature. 562 586 - T 11-11-2016 IPR022966 Ribonuclease II/R, conserved site vm_RS01940 b2b216e437925faa1adeabdd1f70c2e5 821 SUPERFAMILY SSF50249 227 650 9.71E-144 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS02845 8cbefbfad3f8316b7b2f22d6df2ce111 202 Gene3D G3DSA:3.40.50.300 1 198 1.3E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02845 8cbefbfad3f8316b7b2f22d6df2ce111 202 Pfam PF01121 Dephospho-CoA kinase 4 180 4.5E-71 T 11-11-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 vm_RS02845 8cbefbfad3f8316b7b2f22d6df2ce111 202 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 187 8.2E-65 T 11-11-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 vm_RS02845 8cbefbfad3f8316b7b2f22d6df2ce111 202 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 2 197 27.353 T 11-11-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24 vm_RS02845 8cbefbfad3f8316b7b2f22d6df2ce111 202 SUPERFAMILY SSF52540 1 192 6.26E-41 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02070 a7cce014599a851da5a362b0f6ba5fe0 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 32.753 T 11-11-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 vm_RS02070 a7cce014599a851da5a362b0f6ba5fe0 129 SUPERFAMILY SSF53137 14 129 6.54E-48 T 11-11-2016 vm_RS02070 a7cce014599a851da5a362b0f6ba5fe0 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 4.2E-55 T 11-11-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS02070 a7cce014599a851da5a362b0f6ba5fe0 129 Pfam PF00411 Ribosomal protein S11 19 128 1.5E-52 T 11-11-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 vm_RS02070 a7cce014599a851da5a362b0f6ba5fe0 129 PIRSF PIRSF002131 1 129 1.8E-52 T 11-11-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 vm_RS02070 a7cce014599a851da5a362b0f6ba5fe0 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 11-11-2016 IPR018102 Ribosomal S11, conserved site vm_RS02070 a7cce014599a851da5a362b0f6ba5fe0 129 Gene3D G3DSA:3.30.420.80 7 129 1.6E-53 T 11-11-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 vm_RS09190 236bf614a30793eb04451fc03ef8180d 346 SUPERFAMILY SSF53383 11 344 1.51E-74 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS09190 236bf614a30793eb04451fc03ef8180d 346 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 6 343 5.4E-121 T 11-11-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 vm_RS09190 236bf614a30793eb04451fc03ef8180d 346 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 206 215 - T 11-11-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 vm_RS09190 236bf614a30793eb04451fc03ef8180d 346 Gene3D G3DSA:3.40.640.10 40 249 1.8E-73 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS09190 236bf614a30793eb04451fc03ef8180d 346 Pfam PF00155 Aminotransferase class I and II 42 339 4.5E-56 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 vm_RS09190 236bf614a30793eb04451fc03ef8180d 346 Gene3D G3DSA:3.90.1150.10 250 344 3.5E-12 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS09190 236bf614a30793eb04451fc03ef8180d 346 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 345 53.447 T 11-11-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9 vm_RS08880 38caff17eea2451a5de4fd52601d9a47 222 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 181 200 4.5E-5 T 11-11-2016 vm_RS08880 38caff17eea2451a5de4fd52601d9a47 222 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 163 180 4.5E-5 T 11-11-2016 vm_RS08880 38caff17eea2451a5de4fd52601d9a47 222 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 201 221 4.5E-5 T 11-11-2016 vm_RS08880 38caff17eea2451a5de4fd52601d9a47 222 Pfam PF13488 Glycine zipper 38 86 2.3E-12 T 11-11-2016 vm_RS08880 38caff17eea2451a5de4fd52601d9a47 222 Gene3D G3DSA:3.30.1330.60 106 220 1.4E-35 T 11-11-2016 IPR006665 OmpA-like domain vm_RS08880 38caff17eea2451a5de4fd52601d9a47 222 PRINTS PR01021 OMPA domain signature 148 163 6.7E-8 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS08880 38caff17eea2451a5de4fd52601d9a47 222 PRINTS PR01021 OMPA domain signature 163 179 6.7E-8 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS08880 38caff17eea2451a5de4fd52601d9a47 222 Pfam PF00691 OmpA family 118 212 1.3E-19 T 11-11-2016 IPR006665 OmpA-like domain vm_RS08880 38caff17eea2451a5de4fd52601d9a47 222 SUPERFAMILY SSF103088 106 221 1.31E-35 T 11-11-2016 IPR006665 OmpA-like domain vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 Gene3D G3DSA:3.30.2090.10 181 263 3.9E-19 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 3.0E-74 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 3.0E-74 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 3.0E-74 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 3.0E-74 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.0E-74 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.0E-74 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 3.0E-74 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 3.0E-74 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 3.0E-74 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 Gene3D G3DSA:1.10.3850.10 792 1006 1.9E-58 T 11-11-2016 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 SUPERFAMILY SSF82866 782 1008 1.11E-47 T 11-11-2016 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 SUPERFAMILY SSF82866 290 489 4.19E-47 T 11-11-2016 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 SUPERFAMILY SSF82693 136 181 5.58E-21 T 11-11-2016 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 SUPERFAMILY SSF82693 267 323 5.58E-21 T 11-11-2016 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 Gene3D G3DSA:3.30.2090.10 700 787 1.5E-20 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 SUPERFAMILY SSF82693 553 650 6.28E-20 T 11-11-2016 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 SUPERFAMILY SSF82714 701 783 2.49E-18 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 SUPERFAMILY SSF82714 182 263 1.57E-16 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 SUPERFAMILY SSF82693 41 130 8.72E-25 T 11-11-2016 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 Gene3D G3DSA:3.30.70.1430 555 650 1.7E-14 T 11-11-2016 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 Gene3D G3DSA:3.30.70.1430 41 141 3.9E-29 T 11-11-2016 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 Gene3D G3DSA:1.20.1640.10 284 497 4.0E-55 T 11-11-2016 vm_RS14700 65d2c10debb5e1c34e0130e78e2876c8 1036 Pfam PF00873 AcrB/AcrD/AcrF family 4 1003 6.3E-276 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS10595 0e923a59e0dd73da0449c5c456537ae9 474 TIGRFAM TIGR01992 PTS-IIBC-Tre: PTS system, trehalose-specific IIBC component 6 461 1.0E-204 T 11-11-2016 IPR011296 Phosphotransferase system, trehalose-specific IIBC component GO:0015574|GO:0015771|GO:0016021 vm_RS10595 0e923a59e0dd73da0449c5c456537ae9 474 SUPERFAMILY SSF55604 10 82 6.93E-20 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS10595 0e923a59e0dd73da0449c5c456537ae9 474 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 vm_RS10595 0e923a59e0dd73da0449c5c456537ae9 474 Gene3D G3DSA:3.30.1360.60 6 83 5.7E-24 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS10595 0e923a59e0dd73da0449c5c456537ae9 474 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 30 111 1.9E-13 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS10595 0e923a59e0dd73da0449c5c456537ae9 474 Pfam PF02378 Phosphotransferase system, EIIC 112 402 1.6E-33 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 vm_RS10595 0e923a59e0dd73da0449c5c456537ae9 474 Pfam PF00367 phosphotransferase system, EIIB 11 43 1.0E-12 T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 SUPERFAMILY SSF53671 4 306 6.02E-101 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 8 305 4.7E-115 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 1.0E-25 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 260 269 1.0E-25 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 1.0E-25 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 1.0E-25 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 7 307 38.435 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 Gene3D G3DSA:3.40.50.1370 7 144 2.0E-49 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 Gene3D G3DSA:3.40.50.1370 145 292 1.5E-55 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 2.7E-41 T 11-11-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 134 151 4.5E-36 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 226 235 4.5E-36 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 4.5E-36 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 79 88 4.5E-36 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 4.5E-36 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 264 269 4.5E-36 T 11-11-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS02380 df509a7d3aa04088afa508595d3887c9 309 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 303 5.4E-33 T 11-11-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 vm_RS11565 eac7956e0dec48961869aa1607f0ba72 229 Pfam PF00072 Response regulator receiver domain 5 116 4.8E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS11565 eac7956e0dec48961869aa1607f0ba72 229 SMART SM00862 150 225 2.0E-28 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS11565 eac7956e0dec48961869aa1607f0ba72 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 1 226 2.2E-113 T 11-11-2016 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 vm_RS11565 eac7956e0dec48961869aa1607f0ba72 229 Gene3D G3DSA:1.10.10.10 129 227 3.3E-37 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11565 eac7956e0dec48961869aa1607f0ba72 229 Gene3D G3DSA:3.40.50.2300 2 124 5.0E-42 T 11-11-2016 vm_RS11565 eac7956e0dec48961869aa1607f0ba72 229 SMART SM00448 3 116 3.0E-45 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS11565 eac7956e0dec48961869aa1607f0ba72 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 1.1E-28 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS11565 eac7956e0dec48961869aa1607f0ba72 229 SUPERFAMILY SSF52172 3 184 1.42E-43 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS03810 290733d5018da219212ed136c3bb0daa 474 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 3 308 3.3E-115 T 11-11-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 Gene3D G3DSA:1.10.1160.10 236 316 2.5E-35 T 11-11-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 462 1.8E-192 T 11-11-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 182 192 3.3E-27 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 3.3E-27 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 3.3E-27 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 3.3E-27 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 PRINTS PR00987 Glutamyl-tRNA synthetase signature 198 206 3.3E-27 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 Gene3D G3DSA:3.40.50.620 2 67 1.3E-52 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS03810 290733d5018da219212ed136c3bb0daa 474 Gene3D G3DSA:3.40.50.620 184 233 1.3E-52 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS03810 290733d5018da219212ed136c3bb0daa 474 SUPERFAMILY SSF48163 302 464 9.02E-47 T 11-11-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 9 20 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 SUPERFAMILY SSF52374 3 301 2.23E-108 T 11-11-2016 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 Gene3D G3DSA:3.90.800.10 68 183 1.2E-37 T 11-11-2016 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 3 464 33.735 T 11-11-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 vm_RS03810 290733d5018da219212ed136c3bb0daa 474 Gene3D G3DSA:1.10.10.350 366 464 2.1E-31 T 11-11-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 vm_RS06250 14f118ca0a176856787a9085b94df648 297 Gene3D G3DSA:3.40.50.1100 125 294 2.5E-15 T 11-11-2016 vm_RS06250 14f118ca0a176856787a9085b94df648 297 Gene3D G3DSA:3.40.50.1100 33 124 8.2E-6 T 11-11-2016 vm_RS06250 14f118ca0a176856787a9085b94df648 297 SUPERFAMILY SSF53686 7 294 6.54E-53 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS00100 3045386b1cda53116f5335417a1cd561 94 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 2 70 7.0E-4 T 11-11-2016 vm_RS00100 3045386b1cda53116f5335417a1cd561 94 Pfam PF13710 ACT domain 12 73 4.3E-21 T 11-11-2016 vm_RS00100 3045386b1cda53116f5335417a1cd561 94 SUPERFAMILY SSF55021 3 75 6.41E-10 T 11-11-2016 vm_RS00100 3045386b1cda53116f5335417a1cd561 94 Gene3D G3DSA:3.30.70.260 1 74 2.1E-12 T 11-11-2016 vm_RS03390 e2de4137704c3f78df601627fba6f93a 296 Gene3D G3DSA:1.10.1040.10 174 291 3.3E-48 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 vm_RS03390 e2de4137704c3f78df601627fba6f93a 296 Gene3D G3DSA:3.40.50.720 1 173 2.3E-44 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03390 e2de4137704c3f78df601627fba6f93a 296 SUPERFAMILY SSF51735 1 165 7.01E-52 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03390 e2de4137704c3f78df601627fba6f93a 296 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 142 1.7E-29 T 11-11-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 vm_RS03390 e2de4137704c3f78df601627fba6f93a 296 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 168 290 2.3E-39 T 11-11-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 vm_RS03390 e2de4137704c3f78df601627fba6f93a 296 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 292 1.1E-90 T 11-11-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 vm_RS03390 e2de4137704c3f78df601627fba6f93a 296 SUPERFAMILY SSF48179 168 290 8.84E-39 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 vm_RS14175 625a4c7a478dc14e265e5a58a7fbdecf 322 Gene3D G3DSA:3.20.20.70 7 244 4.4E-83 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS14175 625a4c7a478dc14e265e5a58a7fbdecf 322 SUPERFAMILY SSF51395 10 319 2.93E-90 T 11-11-2016 vm_RS14175 625a4c7a478dc14e265e5a58a7fbdecf 322 PIRSF PIRSF006621 1 321 1.6E-103 T 11-11-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 vm_RS14175 625a4c7a478dc14e265e5a58a7fbdecf 322 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 1 321 49.513 T 11-11-2016 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 vm_RS14175 625a4c7a478dc14e265e5a58a7fbdecf 322 Gene3D G3DSA:1.10.1200.80 254 320 7.5E-20 T 11-11-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 vm_RS14175 625a4c7a478dc14e265e5a58a7fbdecf 322 Pfam PF01207 Dihydrouridine synthase (Dus) 13 315 4.6E-112 T 11-11-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 vm_RS14175 625a4c7a478dc14e265e5a58a7fbdecf 322 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 3 320 9.3E-134 T 11-11-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 vm_RS14175 625a4c7a478dc14e265e5a58a7fbdecf 322 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 94 112 - T 11-11-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 vm_RS10610 598b246af0bd841971d563a1ed3c61e5 344 SUPERFAMILY SSF52540 1 239 1.27E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10610 598b246af0bd841971d563a1ed3c61e5 344 Gene3D G3DSA:3.40.50.300 1 236 8.0E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10610 598b246af0bd841971d563a1ed3c61e5 344 Gene3D G3DSA:3.30.70.260 237 343 2.4E-32 T 11-11-2016 vm_RS10610 598b246af0bd841971d563a1ed3c61e5 344 SMART SM00382 30 235 1.4E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS10610 598b246af0bd841971d563a1ed3c61e5 344 Pfam PF09383 NIL domain 268 339 2.7E-21 T 11-11-2016 IPR018449 NIL domain vm_RS10610 598b246af0bd841971d563a1ed3c61e5 344 Pfam PF00005 ABC transporter 21 169 6.3E-35 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS10610 598b246af0bd841971d563a1ed3c61e5 344 TIGRFAM TIGR02314 ABC_MetN: D-methionine ABC transporter, ATP-binding protein 1 343 5.2E-207 T 11-11-2016 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria GO:0005524|GO:0009276|GO:0048473|GO:0048474 vm_RS10610 598b246af0bd841971d563a1ed3c61e5 344 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS10610 598b246af0bd841971d563a1ed3c61e5 344 SMART SM00930 265 340 3.3E-29 T 11-11-2016 IPR018449 NIL domain vm_RS10610 598b246af0bd841971d563a1ed3c61e5 344 SUPERFAMILY SSF55021 248 343 7.9E-26 T 11-11-2016 vm_RS12935 3d65f4bce74b1329d1e93cffe50a1b99 256 SMART SM00420 9 61 2.1E-14 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS12935 3d65f4bce74b1329d1e93cffe50a1b99 256 SMART SM01134 73 234 2.6E-56 T 11-11-2016 vm_RS12935 3d65f4bce74b1329d1e93cffe50a1b99 256 Pfam PF00455 DeoR C terminal sensor domain 78 233 1.7E-44 T 11-11-2016 IPR014036 DeoR C-terminal sensor domain vm_RS12935 3d65f4bce74b1329d1e93cffe50a1b99 256 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 11-11-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 vm_RS12935 3d65f4bce74b1329d1e93cffe50a1b99 256 SUPERFAMILY SSF46785 9 70 5.2E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12935 3d65f4bce74b1329d1e93cffe50a1b99 256 Gene3D G3DSA:1.10.10.10 5 51 3.4E-7 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12935 3d65f4bce74b1329d1e93cffe50a1b99 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 8.6E-5 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS12935 3d65f4bce74b1329d1e93cffe50a1b99 256 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 8.6E-5 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS12935 3d65f4bce74b1329d1e93cffe50a1b99 256 Gene3D G3DSA:3.40.50.1360 78 218 2.0E-15 T 11-11-2016 vm_RS12935 3d65f4bce74b1329d1e93cffe50a1b99 256 Pfam PF08220 DeoR-like helix-turn-helix domain 9 61 1.0E-15 T 11-11-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 vm_RS12935 3d65f4bce74b1329d1e93cffe50a1b99 256 SUPERFAMILY SSF100950 79 234 4.69E-31 T 11-11-2016 vm_RS07850 3a4f9bd2aa8110370f778ad4cfd25cfb 272 Gene3D G3DSA:1.10.10.60 169 217 7.7E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS07850 3a4f9bd2aa8110370f778ad4cfd25cfb 272 SMART SM00342 180 264 1.5E-18 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS07850 3a4f9bd2aa8110370f778ad4cfd25cfb 272 Gene3D G3DSA:1.10.10.60 218 264 2.1E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS07850 3a4f9bd2aa8110370f778ad4cfd25cfb 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 233 248 4.1E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS07850 3a4f9bd2aa8110370f778ad4cfd25cfb 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 248 264 4.1E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS07850 3a4f9bd2aa8110370f778ad4cfd25cfb 272 SUPERFAMILY SSF46689 217 264 2.69E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS07850 3a4f9bd2aa8110370f778ad4cfd25cfb 272 Pfam PF12833 Helix-turn-helix domain 187 264 2.0E-19 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS03420 fe0b9b936a6ae41a13cf4ec128f05380 182 PIRSF PIRSF001467 8 180 7.9E-23 T 11-11-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 vm_RS03420 fe0b9b936a6ae41a13cf4ec128f05380 182 SUPERFAMILY SSF50891 19 180 7.01E-52 T 11-11-2016 IPR029000 Cyclophilin-like domain vm_RS03420 fe0b9b936a6ae41a13cf4ec128f05380 182 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 36 51 1.4E-10 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 vm_RS03420 fe0b9b936a6ae41a13cf4ec128f05380 182 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 151 1.4E-10 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 vm_RS03420 fe0b9b936a6ae41a13cf4ec128f05380 182 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 62 74 1.4E-10 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 vm_RS03420 fe0b9b936a6ae41a13cf4ec128f05380 182 Gene3D G3DSA:2.40.100.10 21 181 9.9E-49 T 11-11-2016 IPR029000 Cyclophilin-like domain vm_RS03420 fe0b9b936a6ae41a13cf4ec128f05380 182 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 23 179 1.1E-41 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 vm_RS03420 fe0b9b936a6ae41a13cf4ec128f05380 182 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 57 74 - T 11-11-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 vm_RS00865 b149ecb44106931de1d1cb645b98f9a3 542 PIRSF PIRSF006294 4 541 2.4E-225 T 11-11-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 vm_RS00865 b149ecb44106931de1d1cb645b98f9a3 542 Pfam PF01293 Phosphoenolpyruvate carboxykinase 24 491 7.2E-210 T 11-11-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 vm_RS00865 b149ecb44106931de1d1cb645b98f9a3 542 Hamap MF_00453 Phosphoenolpyruvate carboxykinase [ATP] [pckA]. 18 539 54.691 T 11-11-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 vm_RS00865 b149ecb44106931de1d1cb645b98f9a3 542 SUPERFAMILY SSF53795 230 541 4.03E-127 T 11-11-2016 vm_RS00865 b149ecb44106931de1d1cb645b98f9a3 542 Gene3D G3DSA:3.40.449.10 24 228 7.2E-86 T 11-11-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 vm_RS00865 b149ecb44106931de1d1cb645b98f9a3 542 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 266 281 - T 11-11-2016 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 vm_RS00865 b149ecb44106931de1d1cb645b98f9a3 542 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 11 541 1.0E-277 T 11-11-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 vm_RS00865 b149ecb44106931de1d1cb645b98f9a3 542 Gene3D G3DSA:3.90.228.20 229 291 6.2E-121 T 11-11-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 vm_RS00865 b149ecb44106931de1d1cb645b98f9a3 542 Gene3D G3DSA:3.90.228.20 352 540 6.2E-121 T 11-11-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 vm_RS00865 b149ecb44106931de1d1cb645b98f9a3 542 SUPERFAMILY SSF68923 11 228 3.31E-87 T 11-11-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 vm_RS10690 3be86ac69d9915d7f214453d697f3524 80 Gene3D G3DSA:1.10.287.1040 5 76 2.6E-26 T 11-11-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 vm_RS10690 3be86ac69d9915d7f214453d697f3524 80 SUPERFAMILY SSF116842 2 73 1.07E-20 T 11-11-2016 vm_RS10690 3be86ac69d9915d7f214453d697f3524 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 10 65 1.0E-20 T 11-11-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 vm_RS10690 3be86ac69d9915d7f214453d697f3524 80 PIRSF PIRSF006488 1 77 1.4E-21 T 11-11-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 vm_RS10690 3be86ac69d9915d7f214453d697f3524 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 10 70 15.62 T 11-11-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 vm_RS10690 3be86ac69d9915d7f214453d697f3524 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 50 4.0E-14 T 11-11-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 vm_RS10690 3be86ac69d9915d7f214453d697f3524 80 Pfam PF02609 Exonuclease VII small subunit 11 61 4.2E-18 T 11-11-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 vm_RS10365 482ae196b392373dc255bc1ad2d62ab4 105 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 2 105 23.557 T 11-11-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS vm_RS10365 482ae196b392373dc255bc1ad2d62ab4 105 SUPERFAMILY SSF81301 5 105 1.21E-34 T 11-11-2016 vm_RS10365 482ae196b392373dc255bc1ad2d62ab4 105 Pfam PF02410 Ribosomal silencing factor during starvation 14 104 3.4E-26 T 11-11-2016 vm_RS10365 482ae196b392373dc255bc1ad2d62ab4 105 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 9 104 4.7E-36 T 11-11-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS vm_RS10365 482ae196b392373dc255bc1ad2d62ab4 105 Gene3D G3DSA:3.30.460.10 6 105 2.3E-35 T 11-11-2016 vm_RS14360 acd41f1dbf497df8139581e51d000653 347 Gene3D G3DSA:3.40.50.720 4 140 2.2E-41 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14360 acd41f1dbf497df8139581e51d000653 347 Gene3D G3DSA:3.30.360.10 141 343 1.9E-43 T 11-11-2016 vm_RS14360 acd41f1dbf497df8139581e51d000653 347 SUPERFAMILY SSF55347 135 287 3.92E-35 T 11-11-2016 vm_RS14360 acd41f1dbf497df8139581e51d000653 347 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 139 252 7.9E-15 T 11-11-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 vm_RS14360 acd41f1dbf497df8139581e51d000653 347 SUPERFAMILY SSF51735 4 162 4.67E-45 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14360 acd41f1dbf497df8139581e51d000653 347 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 8 125 2.8E-27 T 11-11-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 Gene3D G3DSA:3.90.640.10 239 309 1.5E-5 T 11-11-2016 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 SUPERFAMILY SSF100920 384 536 3.66E-52 T 11-11-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 Gene3D G3DSA:3.30.420.40 201 238 8.5E-31 T 11-11-2016 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 Gene3D G3DSA:3.30.420.40 313 355 8.5E-31 T 11-11-2016 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 Pfam PF00012 Hsp70 protein 22 600 8.5E-191 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 Gene3D G3DSA:3.30.420.40 128 200 1.5E-52 T 11-11-2016 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 Gene3D G3DSA:3.30.420.40 20 87 1.5E-52 T 11-11-2016 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 SUPERFAMILY SSF53067 200 376 3.21E-49 T 11-11-2016 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 615 5.0E-264 T 11-11-2016 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 PRINTS PR00301 70kDa heat shock protein signature 328 344 9.5E-53 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 PRINTS PR00301 70kDa heat shock protein signature 20 33 9.5E-53 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 PRINTS PR00301 70kDa heat shock protein signature 465 481 9.5E-53 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 PRINTS PR00301 70kDa heat shock protein signature 211 221 9.5E-53 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 PRINTS PR00301 70kDa heat shock protein signature 152 172 9.5E-53 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 PRINTS PR00301 70kDa heat shock protein signature 384 403 9.5E-53 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 PRINTS PR00301 70kDa heat shock protein signature 359 379 9.5E-53 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 11-11-2016 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 SUPERFAMILY SSF100934 503 615 7.65E-35 T 11-11-2016 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 SUPERFAMILY SSF53067 19 196 4.92E-49 T 11-11-2016 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 616 45.667 T 11-11-2016 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 11-11-2016 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 Gene3D G3DSA:1.20.1270.10 528 615 4.2E-30 T 11-11-2016 IPR029048 Heat shock protein 70kD, C-terminal domain Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 Gene3D G3DSA:2.60.34.10 386 527 3.7E-55 T 11-11-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain Reactome: R-HSA-3371453 vm_RS11415 ecb725f226931d5e750ec2cd91d2e0d4 616 Gene3D G3DSA:3.30.30.30 88 127 2.9E-8 T 11-11-2016 vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 Gene3D G3DSA:3.30.300.20 387 463 3.7E-23 T 11-11-2016 IPR015946 K homology domain-like, alpha/beta vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 381 460 7.5E-26 T 11-11-2016 IPR032859 GTPase Der, C-terminal KH-domain-like vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 SUPERFAMILY SSF52540 203 467 2.64E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 SUPERFAMILY SSF52540 137 167 2.64E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 Gene3D G3DSA:3.40.50.300 3 170 4.2E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 Gene3D G3DSA:3.40.50.300 202 386 1.3E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 SUPERFAMILY SSF52540 4 167 3.97E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 5.5E-10 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 5.5E-10 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 156 3.6E-21 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 205 370 6.2E-25 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 PIRSF PIRSF006485 1 469 4.6E-182 T 11-11-2016 IPR016484 GTP-binding protein EngA GO:0005525 vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 461 1.8E-181 T 11-11-2016 IPR016484 GTP-binding protein EngA GO:0005525 vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 Pfam PF01926 50S ribosome-binding GTPase 208 325 1.2E-24 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 Pfam PF01926 50S ribosome-binding GTPase 5 119 6.8E-28 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS11360 0dfff5b3fead06a142502681fb5b4ba3 494 Hamap MF_00195 GTPase Der [der]. 2 464 39.14 T 11-11-2016 IPR016484 GTP-binding protein EngA GO:0005525 vm_RS05925 89841da8beff526b2d67b33683ae924e 632 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 166 254 2.8E-14 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 vm_RS05925 89841da8beff526b2d67b33683ae924e 632 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 5 131 6.2E-44 T 11-11-2016 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 vm_RS05925 89841da8beff526b2d67b33683ae924e 632 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 275 617 3.8E-86 T 11-11-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 vm_RS05925 89841da8beff526b2d67b33683ae924e 632 SUPERFAMILY SSF52794 163 258 3.66E-33 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 vm_RS05925 89841da8beff526b2d67b33683ae924e 632 Gene3D G3DSA:3.40.50.2300 158 259 9.8E-39 T 11-11-2016 vm_RS05925 89841da8beff526b2d67b33683ae924e 632 Gene3D G3DSA:3.40.930.10 1 148 8.3E-49 T 11-11-2016 IPR002178 PTS EIIA type-2 domain vm_RS05925 89841da8beff526b2d67b33683ae924e 632 Pfam PF02378 Phosphotransferase system, EIIC 289 564 3.9E-15 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 vm_RS05925 89841da8beff526b2d67b33683ae924e 632 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 164 246 1.3E-29 T 11-11-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 vm_RS05925 89841da8beff526b2d67b33683ae924e 632 SUPERFAMILY SSF55804 1 146 2.22E-40 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 vm_RS05925 89841da8beff526b2d67b33683ae924e 632 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 147 6.6E-37 T 11-11-2016 IPR002178 PTS EIIA type-2 domain vm_RS11340 df5ebd966adf8f08fd11963697173532 487 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 454 5.8E-194 T 11-11-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-73817 vm_RS11340 df5ebd966adf8f08fd11963697173532 487 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 473 9.8E-161 T 11-11-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 vm_RS11340 df5ebd966adf8f08fd11963697173532 487 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 486 82.563 T 11-11-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-73817 vm_RS11340 df5ebd966adf8f08fd11963697173532 487 Gene3D G3DSA:3.20.20.70 2 485 3.5E-194 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS11340 df5ebd966adf8f08fd11963697173532 487 Pfam PF00571 CBS domain 95 140 2.3E-10 T 11-11-2016 IPR000644 CBS domain vm_RS11340 df5ebd966adf8f08fd11963697173532 487 Pfam PF00571 CBS domain 149 201 3.0E-4 T 11-11-2016 IPR000644 CBS domain vm_RS11340 df5ebd966adf8f08fd11963697173532 487 SMART SM01240 7 473 0.0 T 11-11-2016 vm_RS11340 df5ebd966adf8f08fd11963697173532 487 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 295 307 - T 11-11-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 vm_RS11340 df5ebd966adf8f08fd11963697173532 487 SUPERFAMILY SSF54631 95 203 3.54E-25 T 11-11-2016 vm_RS11340 df5ebd966adf8f08fd11963697173532 487 SMART SM00116 158 206 6.2E-6 T 11-11-2016 IPR000644 CBS domain vm_RS11340 df5ebd966adf8f08fd11963697173532 487 SMART SM00116 96 144 2.2E-10 T 11-11-2016 IPR000644 CBS domain vm_RS11340 df5ebd966adf8f08fd11963697173532 487 SUPERFAMILY SSF51412 217 477 2.49E-122 T 11-11-2016 vm_RS11340 df5ebd966adf8f08fd11963697173532 487 SUPERFAMILY SSF51412 1 90 2.49E-122 T 11-11-2016 vm_RS11340 df5ebd966adf8f08fd11963697173532 487 PIRSF PIRSF000130 1 487 3.9E-198 T 11-11-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-73817 vm_RS10400 28e7fe22fade9e12a0abc28f4eb27b84 217 Hamap MF_00013 Octanoyltransferase [lipB]. 4 205 38.132 T 11-11-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 vm_RS10400 28e7fe22fade9e12a0abc28f4eb27b84 217 Gene3D G3DSA:3.90.1550.10 2 201 9.1E-73 T 11-11-2016 vm_RS10400 28e7fe22fade9e12a0abc28f4eb27b84 217 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 74 127 4.0E-23 T 11-11-2016 vm_RS10400 28e7fe22fade9e12a0abc28f4eb27b84 217 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 70 85 - T 11-11-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 vm_RS10400 28e7fe22fade9e12a0abc28f4eb27b84 217 SUPERFAMILY SSF55681 3 204 1.82E-70 T 11-11-2016 vm_RS10400 28e7fe22fade9e12a0abc28f4eb27b84 217 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 26 202 6.0E-71 T 11-11-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 vm_RS10400 28e7fe22fade9e12a0abc28f4eb27b84 217 Pfam PF03099 Biotin/lipoate A/B protein ligase family 58 158 5.6E-8 T 11-11-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 vm_RS10400 28e7fe22fade9e12a0abc28f4eb27b84 217 PIRSF PIRSF016262 1 216 8.5E-62 T 11-11-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 vm_RS04030 4b198c36fe9da37dee5a7da5c6076e08 290 Pfam PF08544 GHMP kinases C terminal 197 259 5.7E-7 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain vm_RS04030 4b198c36fe9da37dee5a7da5c6076e08 290 PIRSF PIRSF010376 4 280 1.8E-85 T 11-11-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 vm_RS04030 4b198c36fe9da37dee5a7da5c6076e08 290 Pfam PF00288 GHMP kinases N terminal domain 88 145 1.4E-8 T 11-11-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 vm_RS04030 4b198c36fe9da37dee5a7da5c6076e08 290 SUPERFAMILY SSF54211 6 157 1.75E-42 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS04030 4b198c36fe9da37dee5a7da5c6076e08 290 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 5 279 5.9E-92 T 11-11-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 vm_RS04030 4b198c36fe9da37dee5a7da5c6076e08 290 Gene3D G3DSA:3.30.70.890 163 279 1.2E-41 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain vm_RS04030 4b198c36fe9da37dee5a7da5c6076e08 290 Gene3D G3DSA:3.30.230.10 8 160 9.0E-51 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS04030 4b198c36fe9da37dee5a7da5c6076e08 290 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 6 272 31.378 T 11-11-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 vm_RS04030 4b198c36fe9da37dee5a7da5c6076e08 290 SUPERFAMILY SSF55060 162 278 1.77E-36 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain vm_RS14950 ca355ce27b839a444f77ec1f100aa01b 290 Gene3D G3DSA:1.10.150.130 7 73 1.4E-4 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal vm_RS14950 ca355ce27b839a444f77ec1f100aa01b 290 Gene3D G3DSA:1.10.443.10 107 228 1.0E-8 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS14950 ca355ce27b839a444f77ec1f100aa01b 290 SUPERFAMILY SSF56349 6 224 1.88E-16 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS14950 ca355ce27b839a444f77ec1f100aa01b 290 Pfam PF12835 Integrase 97 224 2.1E-17 T 11-11-2016 IPR024456 Integrase catalytic domain, putative vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 SUPERFAMILY SSF50447 165 288 4.32E-30 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 Pfam PF03144 Elongation factor Tu domain 2 205 275 4.7E-9 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 Gene3D G3DSA:3.40.50.300 2 192 7.8E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 TIGRFAM TIGR01393 lepA: elongation factor 4 2 594 5.4E-301 T 11-11-2016 IPR006297 Elongation factor 4 GO:0005525 vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 PRINTS PR00315 GTP-binding elongation factor signature 6 19 3.8E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 PRINTS PR00315 GTP-binding elongation factor signature 90 101 3.8E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 PRINTS PR00315 GTP-binding elongation factor signature 126 135 3.8E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 PRINTS PR00315 GTP-binding elongation factor signature 74 84 3.8E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 PRINTS PR00315 GTP-binding elongation factor signature 49 57 3.8E-14 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 Hamap MF_00071 Elongation factor 4 [lepA]. 1 597 305.74 T 11-11-2016 IPR006297 Elongation factor 4 GO:0005525 vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 Gene3D G3DSA:3.30.70.240 401 489 3.7E-20 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 SUPERFAMILY SSF54980 292 370 1.37E-18 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 SUPERFAMILY SSF54980 399 493 6.71E-24 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 176 5.6E-17 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 Gene3D G3DSA:2.40.30.10 193 289 3.0E-24 T 11-11-2016 vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 Pfam PF00009 Elongation factor Tu GTP binding domain 2 181 1.5E-52 T 11-11-2016 vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 Gene3D G3DSA:3.30.70.870 291 369 1.0E-25 T 11-11-2016 vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 Pfam PF00679 Elongation factor G C-terminus 399 478 3.4E-19 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 Pfam PF06421 GTP-binding protein LepA C-terminus 487 592 6.3E-49 T 11-11-2016 IPR013842 GTP-binding protein LepA, C-terminal vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 42 57 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site vm_RS02645 7eb2cdebaa97e96f266602502247949c 597 SUPERFAMILY SSF52540 2 205 9.93E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11180 82f6b57b475743730e19ebf92edde325 473 Pfam PF01420 Type I restriction modification DNA specificity domain 258 408 1.3E-20 T 11-11-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 vm_RS11180 82f6b57b475743730e19ebf92edde325 473 Pfam PF01420 Type I restriction modification DNA specificity domain 7 187 3.8E-16 T 11-11-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 vm_RS11180 82f6b57b475743730e19ebf92edde325 473 SUPERFAMILY SSF116734 244 456 3.6E-41 T 11-11-2016 vm_RS11180 82f6b57b475743730e19ebf92edde325 473 SUPERFAMILY SSF116734 9 202 2.62E-32 T 11-11-2016 vm_RS04730 23bebed8f7b3487ad6eff856fb4a859f 315 SUPERFAMILY SSF46689 263 310 1.16E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS04730 23bebed8f7b3487ad6eff856fb4a859f 315 SMART SM00342 228 310 3.0E-17 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS04730 23bebed8f7b3487ad6eff856fb4a859f 315 Gene3D G3DSA:1.10.10.60 263 309 2.6E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS04730 23bebed8f7b3487ad6eff856fb4a859f 315 Pfam PF12833 Helix-turn-helix domain 235 309 1.6E-17 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS04730 23bebed8f7b3487ad6eff856fb4a859f 315 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 264 306 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 vm_RS02075 ab77033cbdc796a3f942db1bad36f8f8 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 2.1E-30 T 11-11-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 vm_RS02075 ab77033cbdc796a3f942db1bad36f8f8 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 6.9E-85 T 11-11-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 vm_RS02075 ab77033cbdc796a3f942db1bad36f8f8 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 36.328 T 11-11-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 vm_RS02075 ab77033cbdc796a3f942db1bad36f8f8 206 Pfam PF01479 S4 domain 97 143 4.7E-18 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS02075 ab77033cbdc796a3f942db1bad36f8f8 206 SUPERFAMILY SSF55174 3 206 2.62E-72 T 11-11-2016 vm_RS02075 ab77033cbdc796a3f942db1bad36f8f8 206 SMART SM00363 96 160 1.3E-19 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS02075 ab77033cbdc796a3f942db1bad36f8f8 206 SMART SM01390 3 95 6.9E-50 T 11-11-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 vm_RS02075 ab77033cbdc796a3f942db1bad36f8f8 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 11-11-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02075 ab77033cbdc796a3f942db1bad36f8f8 206 Gene3D G3DSA:3.10.290.10 102 190 1.4E-31 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS02075 ab77033cbdc796a3f942db1bad36f8f8 206 Gene3D G3DSA:1.10.1050.10 1 101 5.7E-41 T 11-11-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 vm_RS12200 83982ae041fa238bbcd984870fc1be71 148 PRINTS PR00618 DksA/TraR zinc finger signature 123 135 9.7E-5 T 11-11-2016 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria vm_RS12200 83982ae041fa238bbcd984870fc1be71 148 PRINTS PR00618 DksA/TraR zinc finger signature 111 122 9.7E-5 T 11-11-2016 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria vm_RS12200 83982ae041fa238bbcd984870fc1be71 148 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 111 135 - T 11-11-2016 IPR020458 Zinc finger, DksA/TraR C4-type conserved site vm_RS12200 83982ae041fa238bbcd984870fc1be71 148 SUPERFAMILY SSF109635 7 106 1.83E-36 T 11-11-2016 vm_RS12200 83982ae041fa238bbcd984870fc1be71 148 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 29 137 7.4E-51 T 11-11-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 vm_RS12200 83982ae041fa238bbcd984870fc1be71 148 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 107 140 3.9E-10 T 11-11-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 vm_RS12200 83982ae041fa238bbcd984870fc1be71 148 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 25 147 29.719 T 11-11-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 vm_RS12200 83982ae041fa238bbcd984870fc1be71 148 SUPERFAMILY SSF57716 108 146 5.7E-10 T 11-11-2016 vm_RS14525 a377143423b71ebd20be9dec555599aa 481 Pfam PF02378 Phosphotransferase system, EIIC 127 408 6.8E-30 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 vm_RS14525 a377143423b71ebd20be9dec555599aa 481 Gene3D G3DSA:3.30.1360.60 6 83 2.5E-22 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS14525 a377143423b71ebd20be9dec555599aa 481 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 vm_RS14525 a377143423b71ebd20be9dec555599aa 481 Pfam PF00367 phosphotransferase system, EIIB 11 43 2.2E-10 T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 vm_RS14525 a377143423b71ebd20be9dec555599aa 481 SUPERFAMILY SSF55604 9 80 1.44E-17 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS05950 d24ed64f26e3d35d5a63fc0329ff48b2 461 SUPERFAMILY SSF53383 93 453 3.2E-75 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS05950 d24ed64f26e3d35d5a63fc0329ff48b2 461 Gene3D G3DSA:1.10.10.10 1 67 9.4E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05950 d24ed64f26e3d35d5a63fc0329ff48b2 461 SMART SM00345 7 66 2.6E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS05950 d24ed64f26e3d35d5a63fc0329ff48b2 461 SUPERFAMILY SSF46785 1 70 3.02E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05950 d24ed64f26e3d35d5a63fc0329ff48b2 461 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 9.8E-11 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS05950 d24ed64f26e3d35d5a63fc0329ff48b2 461 Pfam PF00155 Aminotransferase class I and II 125 446 2.1E-34 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 vm_RS05950 d24ed64f26e3d35d5a63fc0329ff48b2 461 Gene3D G3DSA:3.40.640.10 129 349 9.8E-57 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS08040 e153da2192df330716b651ad592164d3 251 PIRSF PIRSF039085 7 250 4.7E-112 T 11-11-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 vm_RS08040 e153da2192df330716b651ad592164d3 251 SMART SM00382 35 222 2.5E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS08040 e153da2192df330716b651ad592164d3 251 Pfam PF00005 ABC transporter 26 174 5.7E-39 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS08040 e153da2192df330716b651ad592164d3 251 Gene3D G3DSA:3.40.50.300 10 246 2.7E-85 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08040 e153da2192df330716b651ad592164d3 251 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS08040 e153da2192df330716b651ad592164d3 251 SUPERFAMILY SSF52540 10 244 5.07E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04445 970be101de064d22db5b1dc52c667ac2 175 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 11-11-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 vm_RS04445 970be101de064d22db5b1dc52c667ac2 175 SUPERFAMILY SSF52218 4 171 4.19E-53 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS04445 970be101de064d22db5b1dc52c667ac2 175 Gene3D G3DSA:3.40.50.360 1 169 3.3E-64 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS04445 970be101de064d22db5b1dc52c667ac2 175 Pfam PF00258 Flavodoxin 6 160 1.2E-32 T 11-11-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 vm_RS04445 970be101de064d22db5b1dc52c667ac2 175 PIRSF PIRSF038996 1 172 1.4E-68 T 11-11-2016 IPR010086 Flavodoxin, long chain GO:0010181 vm_RS04445 970be101de064d22db5b1dc52c667ac2 175 TIGRFAM TIGR01752 flav_long: flavodoxin 4 168 3.7E-73 T 11-11-2016 IPR010086 Flavodoxin, long chain GO:0010181 vm_RS02550 bf3b1f1436a6ca9e15a412b23efe64b3 164 Pfam PF10369 Small subunit of acetolactate synthase 84 158 1.3E-25 T 11-11-2016 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 vm_RS02550 bf3b1f1436a6ca9e15a412b23efe64b3 164 Pfam PF13710 ACT domain 11 73 2.8E-17 T 11-11-2016 vm_RS02550 bf3b1f1436a6ca9e15a412b23efe64b3 164 SUPERFAMILY SSF55021 79 162 5.15E-27 T 11-11-2016 vm_RS02550 bf3b1f1436a6ca9e15a412b23efe64b3 164 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 159 5.0E-62 T 11-11-2016 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 vm_RS02550 bf3b1f1436a6ca9e15a412b23efe64b3 164 Gene3D G3DSA:3.30.70.1150 83 162 1.5E-28 T 11-11-2016 vm_RS02550 bf3b1f1436a6ca9e15a412b23efe64b3 164 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 75 2.0E-37 T 11-11-2016 vm_RS02550 bf3b1f1436a6ca9e15a412b23efe64b3 164 SUPERFAMILY SSF55021 1 75 3.31E-22 T 11-11-2016 vm_RS02550 bf3b1f1436a6ca9e15a412b23efe64b3 164 Gene3D G3DSA:3.30.70.260 1 78 1.1E-34 T 11-11-2016 vm_RS13825 1668f6179008325de418a1e926d74cd7 429 Pfam PF01926 50S ribosome-binding GTPase 200 318 1.5E-20 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS13825 1668f6179008325de418a1e926d74cd7 429 SUPERFAMILY SSF54980 365 428 1.73E-16 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS13825 1668f6179008325de418a1e926d74cd7 429 Pfam PF13167 GTP-binding GTPase N-terminal 25 112 4.4E-31 T 11-11-2016 IPR025121 GTPase HflX, N-terminal vm_RS13825 1668f6179008325de418a1e926d74cd7 429 PIRSF PIRSF006809 3 422 3.3E-150 T 11-11-2016 IPR016496 GTPase HflX GO:0005525 vm_RS13825 1668f6179008325de418a1e926d74cd7 429 Pfam PF16360 GTP-binding GTPase Middle Region 114 192 1.9E-28 T 11-11-2016 IPR032305 GTP-binding protein, middle domain vm_RS13825 1668f6179008325de418a1e926d74cd7 429 Gene3D G3DSA:3.40.50.300 197 362 5.0E-36 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13825 1668f6179008325de418a1e926d74cd7 429 SUPERFAMILY SSF52540 197 370 8.99E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13825 1668f6179008325de418a1e926d74cd7 429 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 10 361 5.2E-156 T 11-11-2016 IPR016496 GTPase HflX GO:0005525 vm_RS13825 1668f6179008325de418a1e926d74cd7 429 Hamap MF_00900 GTPase HflX [hflX]. 27 390 45.464 T 11-11-2016 IPR016496 GTPase HflX GO:0005525 vm_RS13825 1668f6179008325de418a1e926d74cd7 429 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 267 285 4.6E-10 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS13825 1668f6179008325de418a1e926d74cd7 429 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 200 220 4.6E-10 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS13825 1668f6179008325de418a1e926d74cd7 429 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 221 239 4.6E-10 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS01860 c47c07865ff80695a6a90968e9fdbe11 485 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 1 485 55.661 T 11-11-2016 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 vm_RS01860 c47c07865ff80695a6a90968e9fdbe11 485 Gene3D G3DSA:3.40.309.10 257 442 1.1E-42 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 vm_RS01860 c47c07865ff80695a6a90968e9fdbe11 485 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 3 484 2.1E-225 T 11-11-2016 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71 vm_RS01860 c47c07865ff80695a6a90968e9fdbe11 485 SUPERFAMILY SSF53720 2 449 3.67E-121 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 vm_RS01860 c47c07865ff80695a6a90968e9fdbe11 485 Pfam PF00171 Aldehyde dehydrogenase family 9 453 3.2E-117 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 vm_RS01860 c47c07865ff80695a6a90968e9fdbe11 485 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 271 282 - T 11-11-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 vm_RS01860 c47c07865ff80695a6a90968e9fdbe11 485 Gene3D G3DSA:3.40.605.10 3 256 1.2E-73 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 vm_RS01860 c47c07865ff80695a6a90968e9fdbe11 485 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 242 249 - T 11-11-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 SMART SM00278 556 575 0.25 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 SMART SM00278 588 607 13.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 Pfam PF01541 GIY-YIG catalytic domain 18 93 2.4E-12 T 11-11-2016 IPR000305 GIY-YIG nuclease superfamily vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 Gene3D G3DSA:3.40.1440.10 16 97 9.9E-13 T 11-11-2016 IPR027299 GIY-YIG domain vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 387 542 2.5E-44 T 11-11-2016 IPR001162 UvrC family homology region vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 SUPERFAMILY SSF82771 16 100 8.63E-24 T 11-11-2016 IPR000305 GIY-YIG nuclease superfamily vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 607 28.28 T 11-11-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 Gene3D G3DSA:1.10.150.20 555 609 6.4E-24 T 11-11-2016 vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 SUPERFAMILY SSF46600 190 243 8.89E-12 T 11-11-2016 IPR001943 UVR domain GO:0005515 vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 Pfam PF14520 Helix-hairpin-helix domain 557 609 1.4E-10 T 11-11-2016 vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 Gene3D G3DSA:4.10.860.10 183 243 3.9E-16 T 11-11-2016 IPR001943 UVR domain GO:0005515 vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 11 589 3.3E-211 T 11-11-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 SUPERFAMILY SSF47781 521 609 6.99E-20 T 11-11-2016 IPR010994 RuvA domain 2-like vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 Pfam PF02151 UvrB/uvrC motif 208 238 4.9E-8 T 11-11-2016 IPR001943 UVR domain GO:0005515 vm_RS08785 2fc2c11f0b14ebea20e91827acb76744 610 SMART SM00465 17 98 1.1E-22 T 11-11-2016 IPR000305 GIY-YIG nuclease superfamily vm_RS05600 3cb6a04aa252514a1a09caa3ec37cb45 288 Pfam PF01633 Choline/ethanolamine kinase 65 211 6.3E-9 T 11-11-2016 vm_RS05600 3cb6a04aa252514a1a09caa3ec37cb45 288 SUPERFAMILY SSF56112 31 269 9.33E-31 T 11-11-2016 IPR011009 Protein kinase-like domain vm_RS05600 3cb6a04aa252514a1a09caa3ec37cb45 288 Gene3D G3DSA:3.90.1200.10 82 264 3.1E-9 T 11-11-2016 vm_RS09145 3cf829aa514be96cc8edda94bd1da7e5 73 SUPERFAMILY SSF50249 1 67 3.21E-23 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS09145 3cf829aa514be96cc8edda94bd1da7e5 73 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 68 1.2E-43 T 11-11-2016 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355|GO:0006950 vm_RS09145 3cf829aa514be96cc8edda94bd1da7e5 73 PIRSF PIRSF002599 1 72 2.2E-22 T 11-11-2016 IPR012156 Cold shock, CspA GO:0003676 vm_RS09145 3cf829aa514be96cc8edda94bd1da7e5 73 PRINTS PR00050 Cold shock protein signature 4 19 1.2E-14 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 vm_RS09145 3cf829aa514be96cc8edda94bd1da7e5 73 PRINTS PR00050 Cold shock protein signature 25 34 1.2E-14 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 vm_RS09145 3cf829aa514be96cc8edda94bd1da7e5 73 PRINTS PR00050 Cold shock protein signature 40 58 1.2E-14 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 vm_RS09145 3cf829aa514be96cc8edda94bd1da7e5 73 SMART SM00357 3 67 4.2E-26 T 11-11-2016 IPR011129 Cold shock protein GO:0003676 vm_RS09145 3cf829aa514be96cc8edda94bd1da7e5 73 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 1.4E-27 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 vm_RS09145 3cf829aa514be96cc8edda94bd1da7e5 73 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 11-11-2016 IPR019844 Cold-shock conserved site vm_RS09145 3cf829aa514be96cc8edda94bd1da7e5 73 Gene3D G3DSA:2.40.50.140 1 65 1.3E-29 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS07300 b0c79c24451276c89b074648520e4683 203 Gene3D G3DSA:3.90.550.10 12 200 2.9E-57 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS07300 b0c79c24451276c89b074648520e4683 203 SUPERFAMILY SSF53448 18 195 5.23E-35 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS07300 b0c79c24451276c89b074648520e4683 203 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 13 198 30.044 T 11-11-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 vm_RS07300 b0c79c24451276c89b074648520e4683 203 Pfam PF12804 MobA-like NTP transferase domain 18 166 1.7E-35 T 11-11-2016 IPR025877 MobA-like NTP transferase vm_RS07300 b0c79c24451276c89b074648520e4683 203 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 16 196 5.4E-71 T 11-11-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 vm_RS12665 86b36bb6122a1b28e3f27bb4da478539 322 Pfam PF13280 WYL domain 156 309 1.9E-17 T 11-11-2016 IPR026881 WYL domain vm_RS14475 044e5a20d3cf7dbeea19711e63fcbaef 224 Pfam PF04002 RadC-like JAB domain 104 222 2.1E-45 T 11-11-2016 IPR025657 RadC-like JAB domain vm_RS14475 044e5a20d3cf7dbeea19711e63fcbaef 224 SUPERFAMILY SSF102712 133 190 3.92E-5 T 11-11-2016 vm_RS14475 044e5a20d3cf7dbeea19711e63fcbaef 224 Gene3D G3DSA:1.10.150.20 47 78 9.3E-4 T 11-11-2016 vm_RS14475 044e5a20d3cf7dbeea19711e63fcbaef 224 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 11-11-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site vm_RS14475 044e5a20d3cf7dbeea19711e63fcbaef 224 SUPERFAMILY SSF47781 17 91 2.67E-11 T 11-11-2016 IPR010994 RuvA domain 2-like vm_RS14475 044e5a20d3cf7dbeea19711e63fcbaef 224 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 2.2E-77 T 11-11-2016 IPR001405 RadC protein vm_RS14475 044e5a20d3cf7dbeea19711e63fcbaef 224 Gene3D G3DSA:3.40.140.10 101 224 8.0E-52 T 11-11-2016 vm_RS01925 8a2aabb994fc039a0d212637d8893e8f 432 SUPERFAMILY SSF52540 3 430 5.52E-184 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01925 8a2aabb994fc039a0d212637d8893e8f 432 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 11-11-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 vm_RS01925 8a2aabb994fc039a0d212637d8893e8f 432 SMART SM00788 4 425 0.0 T 11-11-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 vm_RS01925 8a2aabb994fc039a0d212637d8893e8f 432 Gene3D G3DSA:3.40.440.10 4 94 7.2E-72 T 11-11-2016 vm_RS01925 8a2aabb994fc039a0d212637d8893e8f 432 Gene3D G3DSA:3.40.440.10 196 266 7.2E-72 T 11-11-2016 vm_RS01925 8a2aabb994fc039a0d212637d8893e8f 432 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 11-11-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 vm_RS01925 8a2aabb994fc039a0d212637d8893e8f 432 Pfam PF00709 Adenylosuccinate synthetase 5 424 1.4E-180 T 11-11-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 vm_RS01925 8a2aabb994fc039a0d212637d8893e8f 432 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 432 221.876 T 11-11-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 vm_RS01925 8a2aabb994fc039a0d212637d8893e8f 432 Gene3D G3DSA:1.10.300.10 103 195 1.1E-38 T 11-11-2016 vm_RS01925 8a2aabb994fc039a0d212637d8893e8f 432 Gene3D G3DSA:3.90.170.10 267 425 1.6E-68 T 11-11-2016 vm_RS01925 8a2aabb994fc039a0d212637d8893e8f 432 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 425 8.0E-196 T 11-11-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 SMART SM01081 34 195 9.5E-90 T 11-11-2016 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 332 764 4.6E-108 T 11-11-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 355 376 2.1E-47 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 526 539 2.1E-47 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 728 744 2.1E-47 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 746 763 2.1E-47 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 292 312 2.1E-47 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 499 517 2.1E-47 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 326 343 2.1E-47 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 PRINTS PR00738 Glycosyl hydrolase family 20 signature 432 449 2.1E-47 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 Gene3D G3DSA:3.30.379.10 206 329 1.8E-27 T 11-11-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 Pfam PF03174 Chitobiase/beta-hexosaminidase C-terminal domain 804 879 8.0E-30 T 11-11-2016 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 Gene3D G3DSA:2.60.40.290 26 167 7.5E-61 T 11-11-2016 IPR012291 Cellulose-binding family II/chitobiase, carbohydrate-binding domain GO:0004553|GO:0030247 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 211 329 2.8E-17 T 11-11-2016 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 SUPERFAMILY SSF51445 332 773 1.14E-141 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 Gene3D G3DSA:2.60.40.320 833 881 2.6E-29 T 11-11-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 SUPERFAMILY SSF81296 780 881 6.72E-39 T 11-11-2016 IPR014756 Immunoglobulin E-set vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 SUPERFAMILY SSF55545 209 331 9.29E-25 T 11-11-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 SUPERFAMILY SSF49384 26 198 3.35E-66 T 11-11-2016 IPR008965 Carbohydrate-binding domain GO:0030246 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 Gene3D G3DSA:3.20.20.80 330 832 5.6E-157 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS03795 6a7465415018ed45783b80c9ebe5900f 883 Pfam PF03173 Putative carbohydrate binding domain 35 193 3.0E-62 T 11-11-2016 IPR004866 Chitobiase/beta-hexosaminidases, N-terminal domain KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 vm_RS02000 adcc2cc976f296b1387788d5351e0cbc 84 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 3 81 26.339 T 11-11-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS02000 adcc2cc976f296b1387788d5351e0cbc 84 Pfam PF00366 Ribosomal protein S17 10 77 1.1E-34 T 11-11-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS02000 adcc2cc976f296b1387788d5351e0cbc 84 PRINTS PR00973 Ribosomal protein S17 family signature 24 47 1.1E-14 T 11-11-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS02000 adcc2cc976f296b1387788d5351e0cbc 84 PRINTS PR00973 Ribosomal protein S17 family signature 56 66 1.1E-14 T 11-11-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS02000 adcc2cc976f296b1387788d5351e0cbc 84 PRINTS PR00973 Ribosomal protein S17 family signature 66 73 1.1E-14 T 11-11-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS02000 adcc2cc976f296b1387788d5351e0cbc 84 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 1 76 5.0E-39 T 11-11-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS02000 adcc2cc976f296b1387788d5351e0cbc 84 Gene3D G3DSA:2.40.50.140 6 82 6.5E-37 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS02000 adcc2cc976f296b1387788d5351e0cbc 84 ProSitePatterns PS00056 Ribosomal protein S17 signature. 56 68 - T 11-11-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02000 adcc2cc976f296b1387788d5351e0cbc 84 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 6 76 2.7E-38 T 11-11-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS02000 adcc2cc976f296b1387788d5351e0cbc 84 SUPERFAMILY SSF50249 6 83 2.83E-34 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS00440 3741973808b902416324d40521bcd78f 209 Gene3D G3DSA:2.10.109.10 83 205 4.8E-45 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain vm_RS00440 3741973808b902416324d40521bcd78f 209 Pfam PF00717 Peptidase S24-like 121 187 9.1E-16 T 11-11-2016 IPR019759 Peptidase S24/S26A/S26B vm_RS00440 3741973808b902416324d40521bcd78f 209 TIGRFAM TIGR00498 lexA: repressor LexA 1 206 3.1E-81 T 11-11-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 vm_RS00440 3741973808b902416324d40521bcd78f 209 Hamap MF_00015 LexA repressor [lexA]. 3 206 32.109 T 11-11-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 vm_RS00440 3741973808b902416324d40521bcd78f 209 SUPERFAMILY SSF46785 3 69 1.09E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS00440 3741973808b902416324d40521bcd78f 209 SUPERFAMILY SSF51306 82 205 1.48E-36 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C vm_RS00440 3741973808b902416324d40521bcd78f 209 Gene3D G3DSA:1.10.10.10 1 69 2.2E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS00440 3741973808b902416324d40521bcd78f 209 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 129 140 3.2E-12 T 11-11-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 vm_RS00440 3741973808b902416324d40521bcd78f 209 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 118 128 3.2E-12 T 11-11-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 vm_RS00440 3741973808b902416324d40521bcd78f 209 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 157 169 3.2E-12 T 11-11-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 vm_RS00440 3741973808b902416324d40521bcd78f 209 Pfam PF01726 LexA DNA binding domain 1 65 1.5E-29 T 11-11-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 vm_RS10605 48961fee555d530a49e3475fb42e1420 186 Pfam PF13242 HAD-hyrolase-like 107 176 1.6E-12 T 11-11-2016 vm_RS10605 48961fee555d530a49e3475fb42e1420 186 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 5 154 6.0E-37 T 11-11-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 vm_RS10605 48961fee555d530a49e3475fb42e1420 186 SUPERFAMILY SSF56784 4 182 2.58E-50 T 11-11-2016 IPR023214 HAD-like domain vm_RS10605 48961fee555d530a49e3475fb42e1420 186 Gene3D G3DSA:3.40.50.1000 3 181 1.3E-61 T 11-11-2016 IPR023214 HAD-like domain vm_RS10605 48961fee555d530a49e3475fb42e1420 186 PIRSF PIRSF004682 1 185 5.4E-64 T 11-11-2016 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 vm_RS10605 48961fee555d530a49e3475fb42e1420 186 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 4 152 1.5E-39 T 11-11-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 vm_RS10605 48961fee555d530a49e3475fb42e1420 186 TIGRFAM TIGR00213 GmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase 4 178 5.5E-80 T 11-11-2016 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 vm_RS01850 5c2a4b175d45548d83758a6ebd4ee7af 403 Gene3D G3DSA:3.40.640.10 59 288 5.0E-90 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS01850 5c2a4b175d45548d83758a6ebd4ee7af 403 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 16 399 5.1E-148 T 11-11-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 vm_RS01850 5c2a4b175d45548d83758a6ebd4ee7af 403 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 7 402 1.7E-208 T 11-11-2016 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 vm_RS01850 5c2a4b175d45548d83758a6ebd4ee7af 403 Gene3D G3DSA:3.90.1150.10 289 401 2.2E-34 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS01850 5c2a4b175d45548d83758a6ebd4ee7af 403 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 13 400 45.076 T 11-11-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 vm_RS01850 5c2a4b175d45548d83758a6ebd4ee7af 403 Pfam PF00202 Aminotransferase class-III 22 399 5.9E-125 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 vm_RS01850 5c2a4b175d45548d83758a6ebd4ee7af 403 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 222 259 - T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 vm_RS01850 5c2a4b175d45548d83758a6ebd4ee7af 403 SUPERFAMILY SSF53383 16 399 5.71E-127 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS07165 5d67d8b46c24e059de2082099f386d5b 156 SUPERFAMILY SSF51197 1 153 4.39E-39 T 11-11-2016 vm_RS07165 5d67d8b46c24e059de2082099f386d5b 156 Gene3D G3DSA:2.60.120.370 1 153 4.0E-43 T 11-11-2016 IPR004375 YhcH/YjgK/YiaL family vm_RS07165 5d67d8b46c24e059de2082099f386d5b 156 Pfam PF04074 Domain of unknown function (DUF386) 1 150 9.5E-38 T 11-11-2016 IPR004375 YhcH/YjgK/YiaL family vm_RS07165 5d67d8b46c24e059de2082099f386d5b 156 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 1 152 4.2E-39 T 11-11-2016 IPR004375 YhcH/YjgK/YiaL family vm_RS14165 109564e42646afa73ac073717b97f8d4 447 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 286 293 - T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 vm_RS14165 109564e42646afa73ac073717b97f8d4 447 Gene3D G3DSA:3.40.50.20 1 129 3.8E-50 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS14165 109564e42646afa73ac073717b97f8d4 447 SMART SM00878 336 441 1.0E-63 T 11-11-2016 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS14165 109564e42646afa73ac073717b97f8d4 447 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 115 322 5.2E-86 T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 vm_RS14165 109564e42646afa73ac073717b97f8d4 447 Gene3D G3DSA:3.30.470.20 204 444 6.5E-102 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS14165 109564e42646afa73ac073717b97f8d4 447 SUPERFAMILY SSF51246 331 444 2.62E-42 T 11-11-2016 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS14165 109564e42646afa73ac073717b97f8d4 447 Pfam PF00289 Biotin carboxylase, N-terminal domain 1 110 5.3E-44 T 11-11-2016 IPR005481 Biotin carboxylase-like, N-terminal domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS14165 109564e42646afa73ac073717b97f8d4 447 SUPERFAMILY SSF52440 1 113 3.67E-46 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS14165 109564e42646afa73ac073717b97f8d4 447 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 1 445 4.1E-244 T 11-11-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 vm_RS14165 109564e42646afa73ac073717b97f8d4 447 Pfam PF02785 Biotin carboxylase C-terminal domain 336 441 2.3E-37 T 11-11-2016 IPR005482 Biotin carboxylase, C-terminal Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS14165 109564e42646afa73ac073717b97f8d4 447 SUPERFAMILY SSF56059 83 346 2.53E-70 T 11-11-2016 vm_RS14165 109564e42646afa73ac073717b97f8d4 447 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 154 168 - T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 vm_RS14165 109564e42646afa73ac073717b97f8d4 447 Gene3D G3DSA:3.30.1490.20 130 203 3.6E-30 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS06610 bb93b078cd577fab2d83dccf954e2161 215 SUPERFAMILY SSF52540 4 201 2.93E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06610 bb93b078cd577fab2d83dccf954e2161 215 SMART SM00382 28 212 4.9E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS06610 bb93b078cd577fab2d83dccf954e2161 215 Gene3D G3DSA:3.40.50.300 3 201 5.7E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06610 bb93b078cd577fab2d83dccf954e2161 215 Pfam PF00005 ABC transporter 20 163 1.2E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS09410 59ade0e8b4f81b4ce4aa2fa6f3f6a255 447 Pfam PF13487 HD domain 283 331 8.8E-13 T 11-11-2016 vm_RS09410 59ade0e8b4f81b4ce4aa2fa6f3f6a255 447 SUPERFAMILY SSF52172 10 165 1.17E-32 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS09410 59ade0e8b4f81b4ce4aa2fa6f3f6a255 447 Gene3D G3DSA:3.40.50.2300 11 141 1.3E-33 T 11-11-2016 vm_RS09410 59ade0e8b4f81b4ce4aa2fa6f3f6a255 447 SMART SM00448 11 122 2.8E-21 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09410 59ade0e8b4f81b4ce4aa2fa6f3f6a255 447 Pfam PF00072 Response regulator receiver domain 13 121 4.6E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09410 59ade0e8b4f81b4ce4aa2fa6f3f6a255 447 SUPERFAMILY SSF109604 210 379 2.39E-13 T 11-11-2016 vm_RS07210 23647c23a05174b70c6139f6b4b015fd 458 PIRSF PIRSF037714 1 454 1.9E-161 T 11-11-2016 IPR017270 Putative MotA/TolQ/ExbB family protein vm_RS07210 23647c23a05174b70c6139f6b4b015fd 458 Pfam PF01618 MotA/TolQ/ExbB proton channel family 311 430 4.2E-30 T 11-11-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 vm_RS05815 0730e7aef2c695199e63066b6c2b1f33 243 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 230 5.3E-113 T 11-11-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 vm_RS05815 0730e7aef2c695199e63066b6c2b1f33 243 Pfam PF00149 Calcineurin-like phosphoesterase 1 199 2.0E-10 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 vm_RS05815 0730e7aef2c695199e63066b6c2b1f33 243 Gene3D G3DSA:3.60.21.10 1 125 3.4E-23 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS05815 0730e7aef2c695199e63066b6c2b1f33 243 Gene3D G3DSA:3.60.21.10 173 206 3.4E-23 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS05815 0730e7aef2c695199e63066b6c2b1f33 243 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 243 119.29 T 11-11-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54 vm_RS05815 0730e7aef2c695199e63066b6c2b1f33 243 SUPERFAMILY SSF56300 1 220 5.38E-32 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 Gene3D G3DSA:3.30.450.20 105 140 2.8E-5 T 11-11-2016 vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 SMART SM00387 484 592 2.9E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 SUPERFAMILY SSF55874 435 590 4.19E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 SUPERFAMILY SSF103190 48 187 1.92E-30 T 11-11-2016 IPR029151 Periplasmic sensor domain-like vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 PRINTS PR00344 Bacterial sensor protein C-terminal signature 523 537 8.2E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 570 8.2E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 PRINTS PR00344 Bacterial sensor protein C-terminal signature 576 589 8.2E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 PRINTS PR00344 Bacterial sensor protein C-terminal signature 541 551 8.2E-14 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 Gene3D G3DSA:3.30.565.10 442 590 1.1E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 PIRSF PIRSF036431 1 595 2.6E-190 T 11-11-2016 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 SMART SM00388 373 441 5.5E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 Pfam PF00512 His Kinase A (phospho-acceptor) domain 374 438 1.1E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 SUPERFAMILY SSF47384 359 439 5.89E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 Gene3D G3DSA:1.10.287.130 373 437 5.6E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05295 fa5a75cf6db1615ed1b664983f4ea464 597 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 590 2.6E-19 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS13420 7f78d04274e43625c99f205feeb4dd2a 275 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 149 169 - T 11-11-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site vm_RS13420 7f78d04274e43625c99f205feeb4dd2a 275 SUPERFAMILY SSF56317 3 263 3.01E-78 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 vm_RS13420 7f78d04274e43625c99f205feeb4dd2a 275 Gene3D G3DSA:3.60.110.10 3 266 6.8E-82 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 vm_RS13420 7f78d04274e43625c99f205feeb4dd2a 275 Pfam PF00795 Carbon-nitrogen hydrolase 3 254 2.3E-51 T 11-11-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 68 95 1.9E-42 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 144 164 1.9E-42 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 210 234 1.9E-42 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 18 35 1.9E-42 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 250 267 1.9E-42 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 185 209 1.9E-42 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 192 329 1.4E-51 T 11-11-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 200 221 - T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 Gene3D G3DSA:1.10.1040.10 196 338 5.2E-58 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 PIRSF PIRSF000114 10 344 1.2E-96 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 16 171 1.0E-47 T 11-11-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 SUPERFAMILY SSF48179 191 343 7.82E-56 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 Gene3D G3DSA:3.40.50.720 9 195 2.8E-54 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 14 334 37.146 T 11-11-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|Reactome: R-HSA-1483166|Reactome: R-HSA-75109 vm_RS01695 0139ba0a110411c5f6dfd1dfc0eb6c14 344 SUPERFAMILY SSF51735 15 190 3.68E-49 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS01985 b39826a12b2d2d5e099b65d09d7233e6 233 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.055 T 11-11-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 vm_RS01985 b39826a12b2d2d5e099b65d09d7233e6 233 SUPERFAMILY SSF54814 2 106 1.15E-36 T 11-11-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 vm_RS01985 b39826a12b2d2d5e099b65d09d7233e6 233 SMART SM00322 60 125 1.8E-7 T 11-11-2016 IPR004087 K Homology domain GO:0003676 vm_RS01985 b39826a12b2d2d5e099b65d09d7233e6 233 SUPERFAMILY SSF54821 108 206 8.76E-41 T 11-11-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01985 b39826a12b2d2d5e099b65d09d7233e6 233 Gene3D G3DSA:3.30.300.20 18 107 1.8E-32 T 11-11-2016 IPR015946 K homology domain-like, alpha/beta vm_RS01985 b39826a12b2d2d5e099b65d09d7233e6 233 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 5.8E-99 T 11-11-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 vm_RS01985 b39826a12b2d2d5e099b65d09d7233e6 233 Gene3D G3DSA:3.30.1140.32 108 207 1.9E-47 T 11-11-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01985 b39826a12b2d2d5e099b65d09d7233e6 233 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 11-11-2016 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01985 b39826a12b2d2d5e099b65d09d7233e6 233 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 4.3E-42 T 11-11-2016 vm_RS01985 b39826a12b2d2d5e099b65d09d7233e6 233 Pfam PF07650 KH domain 38 111 1.2E-18 T 11-11-2016 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS08505 2c5f76726e6eb377163446d8f2e1378c 461 Gene3D G3DSA:1.10.740.10 348 458 2.8E-45 T 11-11-2016 IPR014737 Transposase, Tn5-like, C-terminal vm_RS08505 2c5f76726e6eb377163446d8f2e1378c 461 Gene3D G3DSA:1.10.246.40 2 65 3.7E-26 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS08505 2c5f76726e6eb377163446d8f2e1378c 461 SUPERFAMILY SSF53098 4 460 2.65E-127 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS08505 2c5f76726e6eb377163446d8f2e1378c 461 Pfam PF02281 Transposase Tn5 dimerisation domain 361 454 2.4E-16 T 11-11-2016 IPR003201 Transposase Tn5, dimerisation vm_RS08505 2c5f76726e6eb377163446d8f2e1378c 461 Pfam PF14706 Transposase DNA-binding 9 66 1.2E-20 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS08505 2c5f76726e6eb377163446d8f2e1378c 461 Pfam PF01609 Transposase DDE domain 294 360 1.6E-5 T 11-11-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 vm_RS08505 2c5f76726e6eb377163446d8f2e1378c 461 Gene3D G3DSA:3.90.350.10 68 346 3.2E-92 T 11-11-2016 IPR014736 Transposase, Tn5-like, core vm_RS04640 962dca4b59a16dfda004ce441408db61 164 SMART SM00260 16 153 2.2E-49 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS04640 962dca4b59a16dfda004ce441408db61 164 Pfam PF01584 CheW-like domain 20 156 1.2E-39 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS04640 962dca4b59a16dfda004ce441408db61 164 SUPERFAMILY SSF50341 14 158 2.35E-41 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS04640 962dca4b59a16dfda004ce441408db61 164 Gene3D G3DSA:2.40.50.180 59 94 4.9E-9 T 11-11-2016 vm_RS04640 962dca4b59a16dfda004ce441408db61 164 Gene3D G3DSA:2.30.30.40 95 146 6.0E-9 T 11-11-2016 vm_RS08250 f0f9d47d473834be8e0a37b2a96808e2 543 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 165 5.5E-18 T 11-11-2016 IPR024478 4HB MCP domain vm_RS08250 f0f9d47d473834be8e0a37b2a96808e2 543 Gene3D G3DSA:1.10.287.950 294 512 5.6E-54 T 11-11-2016 vm_RS08250 f0f9d47d473834be8e0a37b2a96808e2 543 Pfam PF00672 HAMP domain 193 262 3.9E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08250 f0f9d47d473834be8e0a37b2a96808e2 543 SMART SM00283 280 541 2.3E-72 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS08250 f0f9d47d473834be8e0a37b2a96808e2 543 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 335 540 5.3E-48 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS08250 f0f9d47d473834be8e0a37b2a96808e2 543 SMART SM00304 211 265 3.4E-5 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08250 f0f9d47d473834be8e0a37b2a96808e2 543 SUPERFAMILY SSF58104 235 542 1.57E-73 T 11-11-2016 vm_RS11885 bafa9a2a1438f76481c8ec24be465b20 685 Gene3D G3DSA:3.20.20.450 415 665 4.1E-95 T 11-11-2016 IPR001633 EAL domain vm_RS11885 bafa9a2a1438f76481c8ec24be465b20 685 SUPERFAMILY SSF141868 418 672 1.31E-88 T 11-11-2016 IPR001633 EAL domain vm_RS11885 bafa9a2a1438f76481c8ec24be465b20 685 SMART SM00052 412 660 1.6E-104 T 11-11-2016 IPR001633 EAL domain vm_RS11885 bafa9a2a1438f76481c8ec24be465b20 685 Gene3D G3DSA:3.30.70.270 243 410 2.2E-53 T 11-11-2016 vm_RS11885 bafa9a2a1438f76481c8ec24be465b20 685 Pfam PF00990 Diguanylate cyclase, GGDEF domain 242 398 7.6E-44 T 11-11-2016 IPR000160 GGDEF domain vm_RS11885 bafa9a2a1438f76481c8ec24be465b20 685 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 238 400 7.2E-38 T 11-11-2016 IPR000160 GGDEF domain vm_RS11885 bafa9a2a1438f76481c8ec24be465b20 685 SMART SM00267 231 402 2.6E-58 T 11-11-2016 IPR000160 GGDEF domain vm_RS11885 bafa9a2a1438f76481c8ec24be465b20 685 SUPERFAMILY SSF55073 247 404 1.96E-47 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS11885 bafa9a2a1438f76481c8ec24be465b20 685 Pfam PF00563 EAL domain 420 655 2.8E-74 T 11-11-2016 IPR001633 EAL domain vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 ProSitePatterns PS00801 Transketolase signature 1. 36 55 - T 11-11-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 Gene3D G3DSA:3.40.50.920 496 624 4.4E-36 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 SUPERFAMILY SSF52518 317 503 1.07E-56 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 SMART SM00861 319 483 3.3E-63 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 14 282 4.1E-119 T 11-11-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 Pfam PF02779 Transketolase, pyrimidine binding domain 319 479 1.7E-37 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 SUPERFAMILY SSF52518 8 199 5.75E-78 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 SUPERFAMILY SSF52518 243 381 5.75E-78 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 Gene3D G3DSA:3.40.50.970 242 333 2.9E-75 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 Gene3D G3DSA:3.40.50.970 26 201 2.9E-75 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 12 624 2.6E-299 T 11-11-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 ProSitePatterns PS00802 Transketolase signature 2. 425 441 - T 11-11-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 Pfam PF02780 Transketolase, C-terminal domain 506 616 2.2E-27 T 11-11-2016 IPR033248 Transketolase, C-terminal domain vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 Gene3D G3DSA:3.40.50.970 334 495 3.1E-35 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 10 625 45.729 T 11-11-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 vm_RS10700 570d4d4abe58dbaeb59a58bf9460392e 626 SUPERFAMILY SSF52922 492 624 5.89E-30 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 vm_RS04345 9dcc0cbd54a2b4071d21e81a6f967424 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 181 203 7.0E-16 T 11-11-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 vm_RS04345 9dcc0cbd54a2b4071d21e81a6f967424 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 21 42 7.0E-16 T 11-11-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 vm_RS04345 9dcc0cbd54a2b4071d21e81a6f967424 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 203 222 7.0E-16 T 11-11-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 vm_RS04345 9dcc0cbd54a2b4071d21e81a6f967424 260 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 7.0E-16 T 11-11-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 vm_RS04345 9dcc0cbd54a2b4071d21e81a6f967424 260 Pfam PF01311 Bacterial export proteins, family 1 13 246 7.6E-57 T 11-11-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 vm_RS04345 9dcc0cbd54a2b4071d21e81a6f967424 260 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 12 256 3.4E-79 T 11-11-2016 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 Gene3D G3DSA:3.40.50.80 99 239 1.6E-33 T 11-11-2016 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 214 222 4.5E-5 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 161 172 4.5E-5 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 119 138 4.5E-5 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 59 66 4.5E-5 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 300 308 - T 11-11-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 SUPERFAMILY SSF54292 237 349 1.04E-25 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 Pfam PF00970 Oxidoreductase FAD-binding domain 16 107 6.4E-16 T 11-11-2016 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 SUPERFAMILY SSF63380 11 108 4.09E-25 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 274 342 4.8E-14 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 Pfam PF00175 Oxidoreductase NAD-binding domain 120 228 3.1E-13 T 11-11-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 Gene3D G3DSA:3.10.20.30 240 348 3.3E-28 T 11-11-2016 IPR012675 Beta-grasp domain vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 SUPERFAMILY SSF52343 114 247 3.4E-33 T 11-11-2016 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 PRINTS PR00410 Phenol hydroxylase reductase family signature 119 138 4.5E-5 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 PRINTS PR00410 Phenol hydroxylase reductase family signature 40 52 4.5E-5 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 PRINTS PR00410 Phenol hydroxylase reductase family signature 214 222 4.5E-5 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 vm_RS13405 3906141e3cbedfb6be1c7dcab0d30745 351 Gene3D G3DSA:2.40.30.10 10 98 1.6E-26 T 11-11-2016 vm_RS09900 e25220e4aa592f8474c2a28728b38b8a 423 Gene3D G3DSA:2.40.160.60 26 423 2.0E-123 T 11-11-2016 vm_RS09900 e25220e4aa592f8474c2a28728b38b8a 423 SUPERFAMILY SSF56935 26 423 2.01E-98 T 11-11-2016 vm_RS09900 e25220e4aa592f8474c2a28728b38b8a 423 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 17 423 5.5E-138 T 11-11-2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 SUPERFAMILY SSF52540 574 804 5.97E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 Gene3D G3DSA:3.40.1170.10 7 128 1.2E-51 T 11-11-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 PIRSF PIRSF037677 7 833 2.9E-159 T 11-11-2016 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 15 860 0.0 T 11-11-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 SUPERFAMILY SSF48334 275 571 6.8E-93 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 Gene3D G3DSA:3.30.420.110 135 263 3.7E-41 T 11-11-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 15 854 25.314 T 11-11-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 Pfam PF05190 MutS family domain IV 435 525 2.7E-29 T 11-11-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 Gene3D G3DSA:1.10.1420.10 272 475 1.2E-57 T 11-11-2016 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 SUPERFAMILY SSF53150 122 274 9.42E-41 T 11-11-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 Pfam PF05192 MutS domain III 277 566 1.1E-40 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 Pfam PF05188 MutS domain II 136 261 2.1E-32 T 11-11-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 SMART SM00534 614 801 2.9E-121 T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 Pfam PF01624 MutS domain I 16 127 1.2E-41 T 11-11-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 Pfam PF00488 MutS domain V 617 804 4.2E-86 T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 SUPERFAMILY SSF55271 8 123 5.75E-43 T 11-11-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 695 711 - T 11-11-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 SMART SM00533 291 598 3.2E-111 T 11-11-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 vm_RS12515 3b1792704f089f4e7c976374d7b405c4 862 Gene3D G3DSA:3.40.50.300 574 804 5.9E-83 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09435 8d1a0ad869264f99e12162d307e28160 121 SUPERFAMILY SSF52172 4 118 5.98E-27 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS09435 8d1a0ad869264f99e12162d307e28160 121 Pfam PF00072 Response regulator receiver domain 7 115 1.9E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09435 8d1a0ad869264f99e12162d307e28160 121 SMART SM00448 3 115 1.5E-18 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09435 8d1a0ad869264f99e12162d307e28160 121 Gene3D G3DSA:3.40.50.2300 3 118 2.8E-26 T 11-11-2016 vm_RS12390 2004ec229501d59033be71787fb28a1d 951 SUPERFAMILY SSF63411 49 258 1.83E-53 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS12390 2004ec229501d59033be71787fb28a1d 951 SUPERFAMILY SSF63411 520 721 2.39E-41 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS12390 2004ec229501d59033be71787fb28a1d 951 Pfam PF00675 Insulinase (Peptidase family M16) 539 645 8.7E-10 T 11-11-2016 IPR011765 Peptidase M16, N-terminal vm_RS12390 2004ec229501d59033be71787fb28a1d 951 Pfam PF00675 Insulinase (Peptidase family M16) 62 178 1.8E-17 T 11-11-2016 IPR011765 Peptidase M16, N-terminal vm_RS12390 2004ec229501d59033be71787fb28a1d 951 Gene3D G3DSA:3.30.830.10 747 929 1.8E-24 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 vm_RS12390 2004ec229501d59033be71787fb28a1d 951 SUPERFAMILY SSF63411 280 466 7.81E-30 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS12390 2004ec229501d59033be71787fb28a1d 951 Gene3D G3DSA:3.30.830.10 262 462 1.7E-18 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 vm_RS12390 2004ec229501d59033be71787fb28a1d 951 Pfam PF05193 Peptidase M16 inactive domain 685 856 3.6E-25 T 11-11-2016 IPR007863 Peptidase M16, C-terminal vm_RS12390 2004ec229501d59033be71787fb28a1d 951 Pfam PF05193 Peptidase M16 inactive domain 219 392 4.8E-30 T 11-11-2016 IPR007863 Peptidase M16, C-terminal vm_RS12390 2004ec229501d59033be71787fb28a1d 951 Gene3D G3DSA:3.30.830.10 521 733 3.4E-43 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 vm_RS12390 2004ec229501d59033be71787fb28a1d 951 Gene3D G3DSA:3.30.830.10 50 261 2.0E-57 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 vm_RS12390 2004ec229501d59033be71787fb28a1d 951 SUPERFAMILY SSF63411 737 941 2.39E-39 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS00345 12970abd9ede2df48924e2868534c110 261 Pfam PF04445 Putative SAM-dependent methyltransferase 19 254 1.2E-107 T 11-11-2016 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 vm_RS00345 12970abd9ede2df48924e2868534c110 261 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 3 256 39.135 T 11-11-2016 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 vm_RS00345 12970abd9ede2df48924e2868534c110 261 SUPERFAMILY SSF53335 4 255 3.5E-76 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS00345 12970abd9ede2df48924e2868534c110 261 Gene3D G3DSA:3.40.1630.10 3 56 6.1E-27 T 11-11-2016 vm_RS00345 12970abd9ede2df48924e2868534c110 261 Gene3D G3DSA:3.40.50.150 57 258 8.4E-80 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS02950 3621160871e227d1337d9fdc394e7b1e 495 Pfam PF01225 Mur ligase family, catalytic domain 27 105 3.6E-12 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 vm_RS02950 3621160871e227d1337d9fdc394e7b1e 495 Gene3D G3DSA:3.40.1190.10 112 342 1.8E-76 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02950 3621160871e227d1337d9fdc394e7b1e 495 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 5 491 33.881 T 11-11-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 vm_RS02950 3621160871e227d1337d9fdc394e7b1e 495 SUPERFAMILY SSF53623 111 338 6.67E-73 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02950 3621160871e227d1337d9fdc394e7b1e 495 SUPERFAMILY SSF53244 340 491 5.8E-48 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02950 3621160871e227d1337d9fdc394e7b1e 495 Pfam PF02875 Mur ligase family, glutamate ligase domain 341 424 2.8E-24 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02950 3621160871e227d1337d9fdc394e7b1e 495 Pfam PF08245 Mur ligase middle domain 117 318 1.4E-50 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02950 3621160871e227d1337d9fdc394e7b1e 495 Gene3D G3DSA:3.90.190.20 343 485 1.3E-53 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02950 3621160871e227d1337d9fdc394e7b1e 495 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 26 491 3.8E-179 T 11-11-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 vm_RS02950 3621160871e227d1337d9fdc394e7b1e 495 Gene3D G3DSA:3.40.1390.10 9 108 7.6E-29 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 vm_RS02950 3621160871e227d1337d9fdc394e7b1e 495 SUPERFAMILY SSF63418 8 108 6.28E-22 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 vm_RS10270 28108b7282156731bb8185f3eb0bdd3b 334 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 156 167 2.8E-7 T 11-11-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 vm_RS10270 28108b7282156731bb8185f3eb0bdd3b 334 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 99 109 2.8E-7 T 11-11-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 vm_RS10270 28108b7282156731bb8185f3eb0bdd3b 334 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 58 69 2.8E-7 T 11-11-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 vm_RS10270 28108b7282156731bb8185f3eb0bdd3b 334 PRINTS PR00182 E.coli/Neisseria porin superfamily signature 326 334 2.8E-7 T 11-11-2016 IPR001702 Porin, Gram-negative type GO:0006810|GO:0015288|GO:0016020 vm_RS10270 28108b7282156731bb8185f3eb0bdd3b 334 SUPERFAMILY SSF56935 36 334 1.43E-38 T 11-11-2016 vm_RS10270 28108b7282156731bb8185f3eb0bdd3b 334 PRINTS PR00184 Neisseria sp. porin signature 60 85 2.3E-12 T 11-11-2016 IPR002299 Porin, Neisseria sp. type GO:0006810|GO:0015288|GO:0016020 vm_RS10270 28108b7282156731bb8185f3eb0bdd3b 334 PRINTS PR00184 Neisseria sp. porin signature 206 223 2.3E-12 T 11-11-2016 IPR002299 Porin, Neisseria sp. type GO:0006810|GO:0015288|GO:0016020 vm_RS10270 28108b7282156731bb8185f3eb0bdd3b 334 PRINTS PR00184 Neisseria sp. porin signature 97 116 2.3E-12 T 11-11-2016 IPR002299 Porin, Neisseria sp. type GO:0006810|GO:0015288|GO:0016020 vm_RS10270 28108b7282156731bb8185f3eb0bdd3b 334 PRINTS PR00184 Neisseria sp. porin signature 323 334 2.3E-12 T 11-11-2016 IPR002299 Porin, Neisseria sp. type GO:0006810|GO:0015288|GO:0016020 vm_RS10270 28108b7282156731bb8185f3eb0bdd3b 334 PRINTS PR00184 Neisseria sp. porin signature 155 172 2.3E-12 T 11-11-2016 IPR002299 Porin, Neisseria sp. type GO:0006810|GO:0015288|GO:0016020 vm_RS10270 28108b7282156731bb8185f3eb0bdd3b 334 Pfam PF13609 Gram-negative porin 12 290 1.6E-31 T 11-11-2016 vm_RS10270 28108b7282156731bb8185f3eb0bdd3b 334 Gene3D G3DSA:2.40.160.10 37 334 1.5E-36 T 11-11-2016 IPR023614 Porin domain vm_RS13035 86154b55650a4f88475a82f0211c3051 426 SMART SM00363 358 422 5.6E-4 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 51 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 Pfam PF00579 tRNA synthetases class I (W and Y) 33 328 1.7E-81 T 11-11-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 4 421 43.416 T 11-11-2016 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 221 233 1.5E-30 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 167 182 1.5E-30 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 188 210 1.5E-30 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 45 67 1.5E-30 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 Gene3D G3DSA:3.10.290.10 322 421 5.3E-25 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 SUPERFAMILY SSF52374 5 328 9.38E-97 T 11-11-2016 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 Pfam PF01479 S4 domain 360 393 2.3E-9 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 Gene3D G3DSA:1.10.240.10 238 321 4.1E-39 T 11-11-2016 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 Gene3D G3DSA:3.40.50.620 3 237 3.3E-96 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS13035 86154b55650a4f88475a82f0211c3051 426 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 3 420 1.9E-121 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 vm_RS13035 86154b55650a4f88475a82f0211c3051 426 SUPERFAMILY SSF55174 326 420 8.9E-16 T 11-11-2016 vm_RS11490 546f56d60c587c9e20e7a0e61af3b2b8 647 SMART SM00283 385 646 9.6E-68 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS11490 546f56d60c587c9e20e7a0e61af3b2b8 647 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 449 643 1.7E-46 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS11490 546f56d60c587c9e20e7a0e61af3b2b8 647 SUPERFAMILY SSF58104 360 647 1.44E-66 T 11-11-2016 vm_RS11490 546f56d60c587c9e20e7a0e61af3b2b8 647 SMART SM01358 33 287 1.2E-46 T 11-11-2016 IPR032255 Helical bimodular sensor domain vm_RS11490 546f56d60c587c9e20e7a0e61af3b2b8 647 Pfam PF12729 Four helix bundle sensory module for signal transduction 1 153 3.8E-9 T 11-11-2016 IPR024478 4HB MCP domain vm_RS11490 546f56d60c587c9e20e7a0e61af3b2b8 647 Gene3D G3DSA:1.10.287.950 402 617 4.0E-53 T 11-11-2016 vm_RS11025 3fdc8967df0fda5e5255729abe71f45c 99 ProDom PD283729 GP25 PHAGE SO2675 MEMBRANE MU-LIKE TRANSMEMBRANE HI1498 ECS4966 8 93 1.0E-24 T 11-11-2016 IPR020269 Bacteriophage Mu, Gp25 vm_RS11025 3fdc8967df0fda5e5255729abe71f45c 99 Pfam PF10805 Protein of unknown function (DUF2730) 3 96 1.4E-26 T 11-11-2016 IPR020269 Bacteriophage Mu, Gp25 vm_RS00900 1afad7d880f0ec340c4d534655e80735 146 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS00900 1afad7d880f0ec340c4d534655e80735 146 SUPERFAMILY SSF54523 35 141 5.76E-38 T 11-11-2016 vm_RS00900 1afad7d880f0ec340c4d534655e80735 146 Gene3D G3DSA:3.30.700.10 10 75 9.2E-9 T 11-11-2016 vm_RS00900 1afad7d880f0ec340c4d534655e80735 146 Pfam PF08334 Type II secretion system (T2SS), protein G 32 140 6.4E-43 T 11-11-2016 IPR013545 Type II secretion system protein G vm_RS00900 1afad7d880f0ec340c4d534655e80735 146 PRINTS PR00813 Bacterial general secretion pathway protein G signature 9 34 2.9E-22 T 11-11-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 vm_RS00900 1afad7d880f0ec340c4d534655e80735 146 PRINTS PR00813 Bacterial general secretion pathway protein G signature 45 63 2.9E-22 T 11-11-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 vm_RS00900 1afad7d880f0ec340c4d534655e80735 146 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 7 30 6.9E-9 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS00900 1afad7d880f0ec340c4d534655e80735 146 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 9 141 5.6E-58 T 11-11-2016 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 vm_RS00900 1afad7d880f0ec340c4d534655e80735 146 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 4 27 4.4E-9 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS09285 42bc76bed42189de824ed168fdb3471b 267 Gene3D G3DSA:3.40.50.150 43 266 7.1E-44 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS09285 42bc76bed42189de824ed168fdb3471b 267 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 13 267 32.394 T 11-11-2016 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519 vm_RS09285 42bc76bed42189de824ed168fdb3471b 267 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 21 266 8.6E-65 T 11-11-2016 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519 vm_RS09285 42bc76bed42189de824ed168fdb3471b 267 SUPERFAMILY SSF53335 19 219 2.74E-46 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS09285 42bc76bed42189de824ed168fdb3471b 267 Pfam PF08241 Methyltransferase domain 57 149 9.7E-27 T 11-11-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 Pfam PF04997 RNA polymerase Rpb1, domain 1 15 342 1.3E-88 T 11-11-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 644 1.0E-27 T 11-11-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 Pfam PF00623 RNA polymerase Rpb1, domain 2 389 485 1.9E-27 T 11-11-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 395 4.4E-8 T 11-11-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 SMART SM00663 235 514 1.1E-184 T 11-11-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1366 0.0 T 11-11-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 4.8E-19 T 11-11-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 Gene3D G3DSA:2.40.40.20 417 489 2.5E-37 T 11-11-2016 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 Gene3D G3DSA:2.40.40.20 349 376 2.5E-37 T 11-11-2016 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 Gene3D G3DSA:2.40.50.100 1156 1209 6.6E-8 T 11-11-2016 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 SUPERFAMILY SSF64484 1133 1362 0.0 T 11-11-2016 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 SUPERFAMILY SSF64484 16 944 0.0 T 11-11-2016 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 Hamap MF_01323 DNA-directed RNA polymerase subunit gamma [rpoC1]. 13 588 32.558 T 11-11-2016 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 15 1375 10.461 T 11-11-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13965 c37ada8073620a2336c939f22cda3a86 1401 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1314 3.0E-76 T 11-11-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS11505 79c810496c4f71680b6b071df6dad91b 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 7.8E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11505 79c810496c4f71680b6b071df6dad91b 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 7.8E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11505 79c810496c4f71680b6b071df6dad91b 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 7.8E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11505 79c810496c4f71680b6b071df6dad91b 301 SUPERFAMILY SSF53850 96 300 1.09E-35 T 11-11-2016 vm_RS11505 79c810496c4f71680b6b071df6dad91b 301 Gene3D G3DSA:3.40.190.10 96 198 2.0E-25 T 11-11-2016 vm_RS11505 79c810496c4f71680b6b071df6dad91b 301 Pfam PF03466 LysR substrate binding domain 96 299 2.1E-38 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS11505 79c810496c4f71680b6b071df6dad91b 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 68 4.2E-14 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11505 79c810496c4f71680b6b071df6dad91b 301 SUPERFAMILY SSF46785 4 117 2.61E-15 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11505 79c810496c4f71680b6b071df6dad91b 301 Gene3D G3DSA:1.10.10.10 6 84 6.0E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11505 79c810496c4f71680b6b071df6dad91b 301 Gene3D G3DSA:3.40.190.10 199 269 7.2E-14 T 11-11-2016 vm_RS07330 65914108fccc8fe9d37c767bebf933a8 530 SMART SM00382 26 238 1.1E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS07330 65914108fccc8fe9d37c767bebf933a8 530 SMART SM00382 343 511 1.6E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS07330 65914108fccc8fe9d37c767bebf933a8 530 Pfam PF12848 ABC transporter 224 309 7.3E-21 T 11-11-2016 IPR032781 ABC-transporter extension domain vm_RS07330 65914108fccc8fe9d37c767bebf933a8 530 Pfam PF00005 ABC transporter 18 184 7.1E-21 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS07330 65914108fccc8fe9d37c767bebf933a8 530 Pfam PF00005 ABC transporter 336 466 2.3E-21 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS07330 65914108fccc8fe9d37c767bebf933a8 530 SUPERFAMILY SSF52540 333 517 3.09E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07330 65914108fccc8fe9d37c767bebf933a8 530 SUPERFAMILY SSF52540 7 237 8.89E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07330 65914108fccc8fe9d37c767bebf933a8 530 Gene3D G3DSA:3.40.50.300 319 527 6.9E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07330 65914108fccc8fe9d37c767bebf933a8 530 Gene3D G3DSA:3.40.50.300 2 270 2.1E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 Gene3D G3DSA:3.40.50.300 4 176 8.0E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 294 311 1.2E-5 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 311 331 1.2E-5 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 SUPERFAMILY SSF46689 219 328 2.33E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 Gene3D G3DSA:1.10.8.60 177 228 2.8E-22 T 11-11-2016 vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 SUPERFAMILY SSF52540 5 237 3.74E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 SMART SM00382 25 177 5.0E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 91 106 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 Pfam PF00158 Sigma-54 interaction domain 5 168 2.0E-58 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 Pfam PF02954 Bacterial regulatory protein, Fis family 294 328 1.2E-6 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 TIGRFAM TIGR02974 phageshock_pspF: psp operon transcriptional activator 5 328 1.4E-164 T 11-11-2016 IPR014317 Transcription activator PspF vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 219 228 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site vm_RS06555 09a3e11796a032393b2afd0cbd819eac 341 Gene3D G3DSA:1.10.10.60 229 317 7.6E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS14260 dafe1ab200b7a2bb812c49c45c681c5b 90 SMART SM00411 1 90 2.7E-44 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS14260 dafe1ab200b7a2bb812c49c45c681c5b 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-11-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 vm_RS14260 dafe1ab200b7a2bb812c49c45c681c5b 90 SUPERFAMILY SSF47729 1 90 2.65E-33 T 11-11-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 vm_RS14260 dafe1ab200b7a2bb812c49c45c681c5b 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 3.2E-34 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS14260 dafe1ab200b7a2bb812c49c45c681c5b 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 4.2E-20 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS14260 dafe1ab200b7a2bb812c49c45c681c5b 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 4.2E-20 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS14260 dafe1ab200b7a2bb812c49c45c681c5b 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 4.2E-20 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS14260 dafe1ab200b7a2bb812c49c45c681c5b 90 Gene3D G3DSA:4.10.520.10 1 90 1.0E-37 T 11-11-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 vm_RS08885 e618e25f82b5e3f0ea0ad4dc8c139bf5 337 SUPERFAMILY SSF81901 25 175 5.49E-21 T 11-11-2016 vm_RS08885 e618e25f82b5e3f0ea0ad4dc8c139bf5 337 Pfam PF08238 Sel1 repeat 70 101 0.026 T 11-11-2016 IPR006597 Sel1-like repeat vm_RS08885 e618e25f82b5e3f0ea0ad4dc8c139bf5 337 Pfam PF08238 Sel1 repeat 34 69 1.1E-10 T 11-11-2016 IPR006597 Sel1-like repeat vm_RS08885 e618e25f82b5e3f0ea0ad4dc8c139bf5 337 SUPERFAMILY SSF46565 276 331 1.31E-12 T 11-11-2016 IPR001623 DnaJ domain vm_RS08885 e618e25f82b5e3f0ea0ad4dc8c139bf5 337 SMART SM00671 70 105 0.24 T 11-11-2016 IPR006597 Sel1-like repeat vm_RS08885 e618e25f82b5e3f0ea0ad4dc8c139bf5 337 SMART SM00671 34 69 1.9E-9 T 11-11-2016 IPR006597 Sel1-like repeat vm_RS08885 e618e25f82b5e3f0ea0ad4dc8c139bf5 337 Gene3D G3DSA:1.10.287.110 276 332 1.1E-11 T 11-11-2016 IPR001623 DnaJ domain vm_RS08885 e618e25f82b5e3f0ea0ad4dc8c139bf5 337 Gene3D G3DSA:1.25.40.10 26 143 5.7E-22 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS03645 7e308a26bb93f9a282e93359a5765322 803 Pfam PF01103 Surface antigen 448 803 3.2E-88 T 11-11-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020 vm_RS03645 7e308a26bb93f9a282e93359a5765322 803 PIRSF PIRSF006076 1 803 1.9E-243 T 11-11-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 vm_RS03645 7e308a26bb93f9a282e93359a5765322 803 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 2 803 25.652 T 11-11-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 vm_RS03645 7e308a26bb93f9a282e93359a5765322 803 Pfam PF07244 Surface antigen variable number repeat 347 420 2.3E-15 T 11-11-2016 IPR010827 Surface antigen variable number GO:0019867 vm_RS03645 7e308a26bb93f9a282e93359a5765322 803 Pfam PF07244 Surface antigen variable number repeat 92 172 2.7E-11 T 11-11-2016 IPR010827 Surface antigen variable number GO:0019867 vm_RS03645 7e308a26bb93f9a282e93359a5765322 803 Pfam PF07244 Surface antigen variable number repeat 266 344 6.8E-10 T 11-11-2016 IPR010827 Surface antigen variable number GO:0019867 vm_RS03645 7e308a26bb93f9a282e93359a5765322 803 Pfam PF07244 Surface antigen variable number repeat 176 263 1.1E-16 T 11-11-2016 IPR010827 Surface antigen variable number GO:0019867 vm_RS03645 7e308a26bb93f9a282e93359a5765322 803 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 24 803 1.6E-278 T 11-11-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 vm_RS08645 22e349455a8f89d450519352ad1e949b 251 Hamap MF_01005 Vitamin B12 import ATP-binding protein BtuD [btuD]. 1 251 44.18 T 11-11-2016 IPR023693 ABC transporter, vitamin B12, BtuD GO:0005524|GO:0015889|GO:0016887 vm_RS08645 22e349455a8f89d450519352ad1e949b 251 Pfam PF00005 ABC transporter 16 164 3.1E-20 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS08645 22e349455a8f89d450519352ad1e949b 251 Gene3D G3DSA:3.40.50.300 16 231 7.3E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08645 22e349455a8f89d450519352ad1e949b 251 SMART SM00382 22 213 5.0E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS08645 22e349455a8f89d450519352ad1e949b 251 SUPERFAMILY SSF52540 16 230 5.79E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05970 2f1fefd3bfc4e7a9ab30b7ce18ec8300 901 Gene3D G3DSA:1.20.1050.60 393 472 2.1E-21 T 11-11-2016 vm_RS05970 2f1fefd3bfc4e7a9ab30b7ce18ec8300 901 Gene3D G3DSA:2.70.98.10 38 241 3.5E-74 T 11-11-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 vm_RS05970 2f1fefd3bfc4e7a9ab30b7ce18ec8300 901 Gene3D G3DSA:2.70.98.10 274 368 3.5E-74 T 11-11-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 vm_RS05970 2f1fefd3bfc4e7a9ab30b7ce18ec8300 901 SUPERFAMILY SSF48208 757 873 2.04E-24 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 vm_RS05970 2f1fefd3bfc4e7a9ab30b7ce18ec8300 901 SUPERFAMILY SSF48208 543 699 2.04E-24 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 vm_RS05970 2f1fefd3bfc4e7a9ab30b7ce18ec8300 901 SUPERFAMILY SSF48208 316 499 2.04E-24 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 vm_RS05970 2f1fefd3bfc4e7a9ab30b7ce18ec8300 901 Pfam PF07971 Glycosyl hydrolase family 92 286 891 2.1E-132 T 11-11-2016 IPR012939 Glycosyl hydrolase family 92 vm_RS05970 2f1fefd3bfc4e7a9ab30b7ce18ec8300 901 Gene3D G3DSA:3.30.2080.10 757 898 3.7E-58 T 11-11-2016 vm_RS05970 2f1fefd3bfc4e7a9ab30b7ce18ec8300 901 Gene3D G3DSA:1.20.1610.10 529 627 5.7E-55 T 11-11-2016 vm_RS05970 2f1fefd3bfc4e7a9ab30b7ce18ec8300 901 Gene3D G3DSA:1.20.1610.10 668 756 5.7E-55 T 11-11-2016 vm_RS05970 2f1fefd3bfc4e7a9ab30b7ce18ec8300 901 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 5 596 2.1E-89 T 11-11-2016 IPR005887 Alpha-1,2-mannosidase, putative vm_RS11265 b7fe71e58a4e36fc054ae23066ad118a 433 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 19 426 7.7E-179 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 vm_RS11265 b7fe71e58a4e36fc054ae23066ad118a 433 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 20 430 5.5E-158 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 vm_RS11265 b7fe71e58a4e36fc054ae23066ad118a 433 PIRSF PIRSF015658 1 432 9.4E-174 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 vm_RS10260 8d7a78f783d0d37a85c90a08fe192e37 136 Pfam PF13411 MerR HTH family regulatory protein 1 67 2.2E-17 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 vm_RS10260 8d7a78f783d0d37a85c90a08fe192e37 136 SUPERFAMILY SSF46955 1 126 2.2E-35 T 11-11-2016 IPR009061 Putative DNA-binding domain vm_RS10260 8d7a78f783d0d37a85c90a08fe192e37 136 Gene3D G3DSA:1.10.1660.10 56 131 1.6E-26 T 11-11-2016 vm_RS10260 8d7a78f783d0d37a85c90a08fe192e37 136 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 vm_RS10260 8d7a78f783d0d37a85c90a08fe192e37 136 Gene3D G3DSA:1.10.1660.10 1 55 9.5E-23 T 11-11-2016 vm_RS10260 8d7a78f783d0d37a85c90a08fe192e37 136 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 127 2.5E-59 T 11-11-2016 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 vm_RS10260 8d7a78f783d0d37a85c90a08fe192e37 136 SMART SM00422 1 70 2.2E-26 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 vm_RS05935 801eef5b8906509c0eaf676a0ba9e437 259 SUPERFAMILY SSF55804 127 250 7.72E-19 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 vm_RS05935 801eef5b8906509c0eaf676a0ba9e437 259 SUPERFAMILY SSF55594 9 89 1.05E-10 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS05935 801eef5b8906509c0eaf676a0ba9e437 259 Gene3D G3DSA:3.40.930.10 129 253 6.4E-20 T 11-11-2016 IPR002178 PTS EIIA type-2 domain vm_RS05935 801eef5b8906509c0eaf676a0ba9e437 259 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 129 252 3.8E-21 T 11-11-2016 IPR002178 PTS EIIA type-2 domain vm_RS05935 801eef5b8906509c0eaf676a0ba9e437 259 Gene3D G3DSA:3.30.1340.10 12 87 3.0E-6 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS05935 801eef5b8906509c0eaf676a0ba9e437 259 PIRSF PIRSF029195 1 259 1.8E-171 T 11-11-2016 IPR016910 Uncharacterised conserved protein UCP029195, PTS-EIIA 2 vm_RS12135 34347ca3c3c21897b0ffb941e285813f 801 Gene3D G3DSA:2.70.98.40 1 325 1.2E-101 T 11-11-2016 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 vm_RS12135 34347ca3c3c21897b0ffb941e285813f 801 Pfam PF06165 Glycosyltransferase family 36 21 267 2.6E-84 T 11-11-2016 IPR010383 Glycosyl hydrolase 94 vm_RS12135 34347ca3c3c21897b0ffb941e285813f 801 SUPERFAMILY SSF74650 1 269 1.69E-79 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 vm_RS12135 34347ca3c3c21897b0ffb941e285813f 801 SMART SM01068 1 63 2.7E-18 T 11-11-2016 IPR009342 Putative carbohydrate binding domain vm_RS12135 34347ca3c3c21897b0ffb941e285813f 801 SUPERFAMILY SSF48208 273 800 1.36E-110 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 vm_RS12135 34347ca3c3c21897b0ffb941e285813f 801 Pfam PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain 296 727 1.1E-211 T 11-11-2016 IPR033432 Glycosyl hydrolase 36, catalytic domain vm_RS12135 34347ca3c3c21897b0ffb941e285813f 801 Gene3D G3DSA:2.60.420.10 723 785 8.0E-9 T 11-11-2016 vm_RS12135 34347ca3c3c21897b0ffb941e285813f 801 Gene3D G3DSA:1.50.10.10 511 609 5.1E-4 T 11-11-2016 IPR012341 Six-hairpin glycosidase GO:0003824 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 Gene3D G3DSA:1.10.287.130 780 849 8.6E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 Gene3D G3DSA:3.30.450.20 626 741 2.7E-14 T 11-11-2016 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 SUPERFAMILY SSF47384 773 854 8.44E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 SUPERFAMILY SSF55874 842 1004 1.57E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 SUPERFAMILY SSF52172 1027 1144 7.97E-20 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 SMART SM00448 1028 1141 1.4E-17 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 Gene3D G3DSA:3.40.50.2300 1025 1144 5.9E-18 T 11-11-2016 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 PRINTS PR00344 Bacterial sensor protein C-terminal signature 990 1003 3.6E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 PRINTS PR00344 Bacterial sensor protein C-terminal signature 933 947 3.6E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 PRINTS PR00344 Bacterial sensor protein C-terminal signature 966 984 3.6E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 PRINTS PR00344 Bacterial sensor protein C-terminal signature 951 961 3.6E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 Pfam PF00072 Response regulator receiver domain 1030 1141 2.4E-12 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 SMART SM00387 897 1006 1.4E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 898 1004 1.1E-18 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 SUPERFAMILY SSF55785 626 741 2.72E-9 T 11-11-2016 IPR000014 PAS domain vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 Pfam PF12860 PAS fold 634 748 2.4E-44 T 11-11-2016 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 SMART SM00388 788 853 1.3E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 Gene3D G3DSA:3.30.565.10 854 1010 7.8E-39 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS14125 983f035d1f06795f9ee20f014e162c6d 1145 Pfam PF00512 His Kinase A (phospho-acceptor) domain 788 853 3.3E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS12165 f0a5f4d07edca635e279700d6e82da6e 112 SMART SM00938 4 105 1.3E-69 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS12165 f0a5f4d07edca635e279700d6e82da6e 112 PIRSF PIRSF039144 1 112 2.0E-56 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS12165 f0a5f4d07edca635e279700d6e82da6e 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-11-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 vm_RS12165 f0a5f4d07edca635e279700d6e82da6e 112 SUPERFAMILY SSF54913 1 112 5.4E-46 T 11-11-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta vm_RS12165 f0a5f4d07edca635e279700d6e82da6e 112 Gene3D G3DSA:3.30.70.120 1 112 1.7E-51 T 11-11-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal vm_RS12165 f0a5f4d07edca635e279700d6e82da6e 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 11-11-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 vm_RS12165 f0a5f4d07edca635e279700d6e82da6e 112 PRINTS PR00340 P-II protein signature 52 75 7.1E-42 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS12165 f0a5f4d07edca635e279700d6e82da6e 112 PRINTS PR00340 P-II protein signature 23 41 7.1E-42 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS12165 f0a5f4d07edca635e279700d6e82da6e 112 PRINTS PR00340 P-II protein signature 83 103 7.1E-42 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS12165 f0a5f4d07edca635e279700d6e82da6e 112 PRINTS PR00340 P-II protein signature 2 17 7.1E-42 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS12165 f0a5f4d07edca635e279700d6e82da6e 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 3.0E-44 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS08840 c89386c7e4dbe6a8affebff088498b64 565 SUPERFAMILY SSF111326 11 557 6.41E-261 T 11-11-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 vm_RS08840 c89386c7e4dbe6a8affebff088498b64 565 Gene3D G3DSA:3.40.1770.10 362 557 8.1E-164 T 11-11-2016 vm_RS08840 c89386c7e4dbe6a8affebff088498b64 565 Gene3D G3DSA:3.40.1770.10 14 146 8.1E-164 T 11-11-2016 vm_RS08840 c89386c7e4dbe6a8affebff088498b64 565 Pfam PF01175 Urocanase 17 549 1.9E-260 T 11-11-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 vm_RS08840 c89386c7e4dbe6a8affebff088498b64 565 ProSitePatterns PS01233 Urocanase signature. 444 459 - T 11-11-2016 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 vm_RS08840 c89386c7e4dbe6a8affebff088498b64 565 PIRSF PIRSF001423 1 563 8.4E-296 T 11-11-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 vm_RS08840 c89386c7e4dbe6a8affebff088498b64 565 TIGRFAM TIGR01228 hutU: urocanate hydratase 15 556 8.0E-294 T 11-11-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 vm_RS08840 c89386c7e4dbe6a8affebff088498b64 565 Gene3D G3DSA:3.40.50.10730 147 351 5.4E-91 T 11-11-2016 vm_RS08840 c89386c7e4dbe6a8affebff088498b64 565 Hamap MF_00577 Urocanate hydratase [hutU]. 2 558 49.645 T 11-11-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 Pfam PF11975 Family 4 glycosyl hydrolase C-terminal domain 197 411 8.6E-49 T 11-11-2016 IPR022616 Glycosyl hydrolase, family 4, C-terminal GO:0004553 vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 ProSitePatterns PS01324 Glycosyl hydrolases family 4 signature. 142 172 - T 11-11-2016 IPR019802 Glycoside hydrolase, family 4, conserved site GO:0004553|GO:0005975 vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 167 178 3.6E-48 T 11-11-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 113 133 3.6E-48 T 11-11-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 142 159 3.6E-48 T 11-11-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 193 205 3.6E-48 T 11-11-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 78 94 3.6E-48 T 11-11-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 99 112 3.6E-48 T 11-11-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 PRINTS PR00732 Glycosyl hydrolase family 4 signature 7 22 3.6E-48 T 11-11-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 Gene3D G3DSA:3.40.50.720 5 170 2.0E-68 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 Pfam PF02056 Family 4 glycosyl hydrolase 7 186 3.0E-62 T 11-11-2016 IPR001088 Glycoside hydrolase, family 4 GO:0004553|GO:0005975 vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 SUPERFAMILY SSF51735 5 170 6.09E-55 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 SUPERFAMILY SSF56327 173 436 7.2E-90 T 11-11-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 vm_RS08400 d5a9abdb78f76ac9198df5d4b61d4ce1 440 Gene3D G3DSA:3.90.110.10 171 435 1.3E-97 T 11-11-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 vm_RS05785 3a69c4a565914ddc19a299b986e5688e 182 Pfam PF07445 Primosomal replication protein priC 6 179 2.2E-50 T 11-11-2016 IPR010890 Primosomal replication PriB/PriC vm_RS11690 606e0f51ee6f2dfc334f7acc45527e7f 555 Pfam PF12848 ABC transporter 230 306 3.5E-13 T 11-11-2016 IPR032781 ABC-transporter extension domain vm_RS11690 606e0f51ee6f2dfc334f7acc45527e7f 555 SUPERFAMILY SSF52540 9 243 4.59E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11690 606e0f51ee6f2dfc334f7acc45527e7f 555 SUPERFAMILY SSF52540 302 527 1.14E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11690 606e0f51ee6f2dfc334f7acc45527e7f 555 Pfam PF00005 ABC transporter 340 473 1.6E-25 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS11690 606e0f51ee6f2dfc334f7acc45527e7f 555 Pfam PF00005 ABC transporter 22 191 3.8E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS11690 606e0f51ee6f2dfc334f7acc45527e7f 555 SMART SM00382 348 522 4.2E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS11690 606e0f51ee6f2dfc334f7acc45527e7f 555 SMART SM00382 31 236 1.7E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS11690 606e0f51ee6f2dfc334f7acc45527e7f 555 Gene3D G3DSA:3.40.50.300 322 535 2.6E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11690 606e0f51ee6f2dfc334f7acc45527e7f 555 Gene3D G3DSA:3.40.50.300 8 279 6.9E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11690 606e0f51ee6f2dfc334f7acc45527e7f 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS11690 606e0f51ee6f2dfc334f7acc45527e7f 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 3 553 1.2E-293 T 11-11-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD vm_RS10620 3862659830007445b3fad3edd2fb7f58 269 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 15 269 1.3E-125 T 11-11-2016 IPR004872 Lipoprotein NlpA family vm_RS10620 3862659830007445b3fad3edd2fb7f58 269 Pfam PF03180 NLPA lipoprotein 33 269 4.3E-98 T 11-11-2016 IPR004872 Lipoprotein NlpA family vm_RS10620 3862659830007445b3fad3edd2fb7f58 269 SUPERFAMILY SSF53850 32 269 1.2E-79 T 11-11-2016 vm_RS10620 3862659830007445b3fad3edd2fb7f58 269 Gene3D G3DSA:3.40.190.10 30 162 1.3E-57 T 11-11-2016 vm_RS10620 3862659830007445b3fad3edd2fb7f58 269 PIRSF PIRSF002854 1 269 7.6E-100 T 11-11-2016 IPR004872 Lipoprotein NlpA family vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 Gene3D G3DSA:1.10.940.10 1 144 2.3E-43 T 11-11-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 Gene3D G3DSA:3.40.50.150 229 424 3.4E-61 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 Gene3D G3DSA:1.10.287.730 145 169 1.1E-15 T 11-11-2016 vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 SUPERFAMILY SSF48013 1 146 2.75E-35 T 11-11-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 4 425 3.4E-154 T 11-11-2016 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 SUPERFAMILY SSF53335 138 424 6.69E-80 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 Pfam PF01029 NusB family 1 123 9.5E-24 T 11-11-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 Gene3D G3DSA:3.30.70.1170 170 227 1.2E-27 T 11-11-2016 vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 Pfam PF01189 16S rRNA methyltransferase RsmB/F 237 422 3.0E-69 T 11-11-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 364 380 3.9E-31 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 219 233 3.9E-31 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 407 424 3.9E-31 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 314 326 3.9E-31 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 248 258 3.9E-31 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS00170 7b5a0729e35c3c5a1115e4d3f0e00029 426 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 313 324 - T 11-11-2016 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 631 5.9E-221 T 11-11-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 Gene3D G3DSA:3.90.740.10 194 360 1.7E-49 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 886 946 3.6E-18 T 11-11-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 SUPERFAMILY SSF47323 642 900 8.78E-68 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 SUPERFAMILY SSF46589 886 950 8.89E-18 T 11-11-2016 IPR010978 tRNA-binding arm GO:0000166 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 951 16.046 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 Pfam PF08264 Anticodon-binding domain of tRNA 675 827 9.2E-40 T 11-11-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 Gene3D G3DSA:1.10.287.380 880 940 1.5E-5 T 11-11-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 Gene3D G3DSA:1.10.730.10 631 817 1.2E-60 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 Gene3D G3DSA:3.40.50.620 3 193 5.3E-142 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 Gene3D G3DSA:3.40.50.620 609 630 5.3E-142 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 Gene3D G3DSA:3.40.50.620 364 571 5.3E-142 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 SUPERFAMILY SSF52374 364 571 2.92E-137 T 11-11-2016 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 SUPERFAMILY SSF52374 1 192 2.92E-137 T 11-11-2016 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 SUPERFAMILY SSF52374 609 641 2.92E-137 T 11-11-2016 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 933 0.0 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 SUPERFAMILY SSF50677 190 365 8.11E-60 T 11-11-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 PRINTS PR00986 Valyl-tRNA synthetase signature 369 382 2.0E-35 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 PRINTS PR00986 Valyl-tRNA synthetase signature 236 253 2.0E-35 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 PRINTS PR00986 Valyl-tRNA synthetase signature 500 518 2.0E-35 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 PRINTS PR00986 Valyl-tRNA synthetase signature 35 46 2.0E-35 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 vm_RS02425 7d07cfdb995229f184257583a1b06bad 953 PRINTS PR00986 Valyl-tRNA synthetase signature 469 490 2.0E-35 T 11-11-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 SUPERFAMILY SSF47384 194 274 4.9E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 SMART SM00448 452 564 4.6E-38 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 Pfam PF00512 His Kinase A (phospho-acceptor) domain 209 273 1.1E-17 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 320 430 5.9E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 SMART SM00388 209 273 8.1E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 428 7.5E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 370 7.5E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 409 7.5E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 384 7.5E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 Gene3D G3DSA:3.40.50.2300 449 570 2.9E-42 T 11-11-2016 vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 Pfam PF00072 Response regulator receiver domain 454 564 1.2E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 Gene3D G3DSA:1.10.287.130 203 269 1.2E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 Gene3D G3DSA:3.30.565.10 281 429 2.1E-45 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 SUPERFAMILY SSF52172 450 569 6.97E-38 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 SMART SM00387 320 431 1.7E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS07540 4a5c94f01ed6e4206543ca6517e143fe 573 SUPERFAMILY SSF55874 262 429 3.41E-47 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS03715 b5a4366515e896b0cbd94a2552ecf6f5 252 PIRSF PIRSF005457 1 252 2.8E-97 T 11-11-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 vm_RS03715 b5a4366515e896b0cbd94a2552ecf6f5 252 SMART SM00849 12 166 3.6E-32 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS03715 b5a4366515e896b0cbd94a2552ecf6f5 252 Pfam PF00753 Metallo-beta-lactamase superfamily 14 166 7.3E-21 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS03715 b5a4366515e896b0cbd94a2552ecf6f5 252 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 167 252 1.5E-26 T 11-11-2016 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 vm_RS03715 b5a4366515e896b0cbd94a2552ecf6f5 252 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 2 252 45.152 T 11-11-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 vm_RS03715 b5a4366515e896b0cbd94a2552ecf6f5 252 Gene3D G3DSA:3.60.15.10 4 252 3.9E-87 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS03715 b5a4366515e896b0cbd94a2552ecf6f5 252 SUPERFAMILY SSF56281 2 252 3.14E-70 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS03715 b5a4366515e896b0cbd94a2552ecf6f5 252 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 252 8.2E-104 T 11-11-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386 vm_RS04800 bc318f27bfc52fda1b8ed25764ed7548 895 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 631 659 - T 11-11-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 vm_RS04800 bc318f27bfc52fda1b8ed25764ed7548 895 Gene3D G3DSA:3.40.605.10 2 225 1.9E-24 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 vm_RS04800 bc318f27bfc52fda1b8ed25764ed7548 895 SUPERFAMILY SSF53720 6 454 3.01E-84 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 vm_RS04800 bc318f27bfc52fda1b8ed25764ed7548 895 Pfam PF00465 Iron-containing alcohol dehydrogenase 458 849 2.6E-113 T 11-11-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 vm_RS04800 bc318f27bfc52fda1b8ed25764ed7548 895 SUPERFAMILY SSF56796 452 863 1.09E-115 T 11-11-2016 vm_RS04800 bc318f27bfc52fda1b8ed25764ed7548 895 Gene3D G3DSA:3.40.309.10 226 273 7.8E-27 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 vm_RS04800 bc318f27bfc52fda1b8ed25764ed7548 895 Gene3D G3DSA:3.40.309.10 309 405 7.8E-27 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 vm_RS04800 bc318f27bfc52fda1b8ed25764ed7548 895 PIRSF PIRSF000111 1 865 0.0 T 11-11-2016 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase GO:0004022|GO:0006066|GO:0008774|GO:0015976|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00071+1.1.1.1|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00592+1.1.1.1|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00625+1.1.1.1|KEGG: 00626+1.1.1.1|KEGG: 00650+1.2.1.10|KEGG: 00830+1.1.1.1|KEGG: 00980+1.1.1.1|KEGG: 00982+1.1.1.1|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-7013|MetaCyc: PWY-7085|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7180|MetaCyc: PWY-7396 vm_RS04800 bc318f27bfc52fda1b8ed25764ed7548 895 Pfam PF00171 Aldehyde dehydrogenase family 5 402 4.3E-25 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 vm_RS04800 bc318f27bfc52fda1b8ed25764ed7548 895 Gene3D G3DSA:3.40.50.1970 451 642 1.6E-60 T 11-11-2016 vm_RS04800 bc318f27bfc52fda1b8ed25764ed7548 895 Gene3D G3DSA:1.20.1090.10 643 863 9.9E-69 T 11-11-2016 vm_RS04800 bc318f27bfc52fda1b8ed25764ed7548 895 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 719 739 - T 11-11-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 vm_RS02810 504157bb80e1d477ac603c51cb33a277 148 Pfam PF06853 Protein of unknown function (DUF1249) 27 139 1.8E-40 T 11-11-2016 IPR009659 Protein of unknown function DUF1249 vm_RS00945 b1e1fcaa842fc9a505aa5d09834cb835 182 SUPERFAMILY SSF55811 4 177 2.84E-40 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS00945 b1e1fcaa842fc9a505aa5d09834cb835 182 PRINTS PR00502 NUDIX hydrolase family signature 89 104 4.7E-5 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 vm_RS00945 b1e1fcaa842fc9a505aa5d09834cb835 182 PRINTS PR00502 NUDIX hydrolase family signature 75 89 4.7E-5 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 vm_RS00945 b1e1fcaa842fc9a505aa5d09834cb835 182 Gene3D G3DSA:3.90.79.10 8 181 9.4E-45 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS00945 b1e1fcaa842fc9a505aa5d09834cb835 182 ProSitePatterns PS00893 Nudix box signature. 80 101 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 vm_RS00945 b1e1fcaa842fc9a505aa5d09834cb835 182 Pfam PF00293 NUDIX domain 47 155 7.0E-16 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 vm_RS06900 a724cee3e4f5ec6bf26cb25c1cd81c26 313 SUPERFAMILY SSF52317 17 297 1.59E-102 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS06900 a724cee3e4f5ec6bf26cb25c1cd81c26 313 Hamap MF_00295 Homoserine O-succinyltransferase [metA]. 1 301 53.092 T 11-11-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 vm_RS06900 a724cee3e4f5ec6bf26cb25c1cd81c26 313 Pfam PF04204 Homoserine O-succinyltransferase 2 299 1.3E-134 T 11-11-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 vm_RS06900 a724cee3e4f5ec6bf26cb25c1cd81c26 313 ProDom PD037892 HOMOSERINE O-SUCCINYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIOSYNTHESIS TRANSSUCCINYLASE HTS METHIONINE O- AMINO-ACID 36 289 1.0E-136 T 11-11-2016 vm_RS06900 a724cee3e4f5ec6bf26cb25c1cd81c26 313 PIRSF PIRSF000450 1 309 5.4E-149 T 11-11-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 vm_RS06900 a724cee3e4f5ec6bf26cb25c1cd81c26 313 Gene3D G3DSA:3.40.50.880 34 301 4.9E-122 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS06900 a724cee3e4f5ec6bf26cb25c1cd81c26 313 TIGRFAM TIGR01001 metA: homoserine O-succinyltransferase 1 302 2.4E-169 T 11-11-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46 vm_RS09170 a71896c51924e0d2492765af7170cc26 257 Gene3D G3DSA:3.20.20.70 4 256 2.3E-88 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS09170 a71896c51924e0d2492765af7170cc26 257 Pfam PF00977 Histidine biosynthesis protein 5 239 6.5E-78 T 11-11-2016 IPR006062 Histidine biosynthesis GO:0000105 vm_RS09170 a71896c51924e0d2492765af7170cc26 257 SUPERFAMILY SSF51366 1 256 6.59E-74 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 vm_RS09170 a71896c51924e0d2492765af7170cc26 257 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 256 44.614 T 11-11-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 vm_RS09170 a71896c51924e0d2492765af7170cc26 257 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 256 7.0E-115 T 11-11-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 vm_RS12530 b9d5f6f76b19ea688e43fb302b3688d6 208 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 1 208 39.094 T 11-11-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 vm_RS12530 b9d5f6f76b19ea688e43fb302b3688d6 208 Gene3D G3DSA:3.40.50.150 13 204 2.9E-62 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS12530 b9d5f6f76b19ea688e43fb302b3688d6 208 SUPERFAMILY SSF53335 14 204 1.37E-44 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS12530 b9d5f6f76b19ea688e43fb302b3688d6 208 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 7 204 4.2E-69 T 11-11-2016 vm_RS12530 b9d5f6f76b19ea688e43fb302b3688d6 208 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 130 145 - T 11-11-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 vm_RS12530 b9d5f6f76b19ea688e43fb302b3688d6 208 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 5 206 1.9E-78 T 11-11-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 vm_RS07465 ab5ae0f5a6b43f03f2b0660c28e8601a 868 Pfam PF11940 Domain of unknown function (DUF3458) 458 824 6.3E-136 T 11-11-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal vm_RS07465 ab5ae0f5a6b43f03f2b0660c28e8601a 868 Gene3D G3DSA:1.10.390.10 307 450 2.1E-32 T 11-11-2016 vm_RS07465 ab5ae0f5a6b43f03f2b0660c28e8601a 868 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 12 866 0.0 T 11-11-2016 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 vm_RS07465 ab5ae0f5a6b43f03f2b0660c28e8601a 868 SUPERFAMILY SSF55486 203 449 1.41E-74 T 11-11-2016 vm_RS07465 ab5ae0f5a6b43f03f2b0660c28e8601a 868 SUPERFAMILY SSF63737 3 192 1.44E-46 T 11-11-2016 vm_RS07465 ab5ae0f5a6b43f03f2b0660c28e8601a 868 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 125 140 3.6E-9 T 11-11-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 vm_RS07465 ab5ae0f5a6b43f03f2b0660c28e8601a 868 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 312 324 3.6E-9 T 11-11-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 vm_RS07465 ab5ae0f5a6b43f03f2b0660c28e8601a 868 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 293 308 3.6E-9 T 11-11-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 vm_RS07465 ab5ae0f5a6b43f03f2b0660c28e8601a 868 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 175 190 3.6E-9 T 11-11-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 vm_RS07465 ab5ae0f5a6b43f03f2b0660c28e8601a 868 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 257 267 3.6E-9 T 11-11-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 vm_RS07465 ab5ae0f5a6b43f03f2b0660c28e8601a 868 Pfam PF01433 Peptidase family M1 42 383 6.5E-68 T 11-11-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 vm_RS07465 ab5ae0f5a6b43f03f2b0660c28e8601a 868 Gene3D G3DSA:1.25.50.10 545 867 1.2E-120 T 11-11-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal vm_RS10175 d009b1c3b92169ae86c0f874e6640710 404 Gene3D G3DSA:3.30.420.40 83 221 3.7E-34 T 11-11-2016 vm_RS10175 d009b1c3b92169ae86c0f874e6640710 404 SUPERFAMILY SSF46785 11 75 6.42E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS10175 d009b1c3b92169ae86c0f874e6640710 404 SUPERFAMILY SSF53067 85 391 8.1E-54 T 11-11-2016 vm_RS10175 d009b1c3b92169ae86c0f874e6640710 404 Pfam PF00480 ROK family 86 390 9.9E-74 T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 vm_RS10175 d009b1c3b92169ae86c0f874e6640710 404 Gene3D G3DSA:1.10.10.10 11 78 4.3E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS10175 d009b1c3b92169ae86c0f874e6640710 404 ProSitePatterns PS01125 ROK family signature. 217 244 - T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 vm_RS10175 d009b1c3b92169ae86c0f874e6640710 404 Gene3D G3DSA:3.30.420.40 222 374 6.0E-47 T 11-11-2016 vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 Gene3D G3DSA:1.10.10.60 425 468 3.1E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 SUPERFAMILY SSF46689 342 385 1.16E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 SUPERFAMILY SSF46689 419 469 1.16E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 Gene3D G3DSA:1.10.8.60 302 371 9.5E-26 T 11-11-2016 vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 Gene3D G3DSA:3.40.50.2300 3 120 2.9E-35 T 11-11-2016 vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 342 351 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 SUPERFAMILY SSF52540 138 370 4.09E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 Pfam PF02954 Bacterial regulatory protein, Fis family 429 468 6.1E-13 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 Pfam PF00072 Response regulator receiver domain 6 115 7.0E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 Pfam PF00158 Sigma-54 interaction domain 135 295 1.7E-65 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 SUPERFAMILY SSF52172 3 173 1.99E-39 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 215 230 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 SMART SM00448 4 115 2.4E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 SMART SM00382 149 296 3.2E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS04275 20c71cc4afda3f8c04dc421c8575e251 478 Gene3D G3DSA:3.40.50.300 128 299 6.2E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 Hamap MF_00242 Arginine deiminase [arcA]. 1 407 43.78 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 Gene3D G3DSA:3.75.10.10 1 67 2.6E-123 T 11-11-2016 vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 Gene3D G3DSA:3.75.10.10 149 407 2.6E-123 T 11-11-2016 vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 PRINTS PR01466 Bacterial arginine deiminase signature 363 377 3.3E-44 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 PRINTS PR01466 Bacterial arginine deiminase signature 343 360 3.3E-44 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 PRINTS PR01466 Bacterial arginine deiminase signature 2 22 3.3E-44 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 PRINTS PR01466 Bacterial arginine deiminase signature 177 192 3.3E-44 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 PRINTS PR01466 Bacterial arginine deiminase signature 386 404 3.3E-44 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 PRINTS PR01466 Bacterial arginine deiminase signature 149 167 3.3E-44 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 TIGRFAM TIGR01078 arcA: arginine deiminase 4 407 1.8E-174 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 Pfam PF02274 Amidinotransferase 19 404 1.0E-95 T 11-11-2016 vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 SUPERFAMILY SSF55909 4 407 1.16E-124 T 11-11-2016 vm_RS13400 4b4679505dcf0ce5b0cbf1d41a1c2704 407 PIRSF PIRSF006356 1 407 2.7E-152 T 11-11-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 vm_RS06280 cb5d8696ad9534f60e3429801751014a 243 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 37 205 4.6E-67 T 11-11-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 vm_RS06280 cb5d8696ad9534f60e3429801751014a 243 SUPERFAMILY SSF55729 5 232 1.48E-85 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS06280 cb5d8696ad9534f60e3429801751014a 243 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 34 214 2.8E-83 T 11-11-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 vm_RS06280 cb5d8696ad9534f60e3429801751014a 243 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 243 87.177 T 11-11-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 vm_RS11975 20fe04bbf7776bbf7efbeaabf9afdc54 151 Gene3D G3DSA:2.30.30.180 88 148 1.5E-12 T 11-11-2016 IPR028998 Ribosome maturation factor RimP, C-terminal vm_RS11975 20fe04bbf7776bbf7efbeaabf9afdc54 151 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 151 23.835 T 11-11-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 vm_RS11975 20fe04bbf7776bbf7efbeaabf9afdc54 151 SUPERFAMILY SSF75420 2 82 2.35E-25 T 11-11-2016 IPR028989 Ribosome maturation factor RimP, N-terminal vm_RS11975 20fe04bbf7776bbf7efbeaabf9afdc54 151 Gene3D G3DSA:3.30.300.70 2 80 1.6E-32 T 11-11-2016 IPR028989 Ribosome maturation factor RimP, N-terminal vm_RS11975 20fe04bbf7776bbf7efbeaabf9afdc54 151 Pfam PF02576 Putative ribosome maturation factor RimP 12 147 1.0E-47 T 11-11-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 vm_RS11975 20fe04bbf7776bbf7efbeaabf9afdc54 151 SUPERFAMILY SSF74942 84 151 8.76E-17 T 11-11-2016 IPR028998 Ribosome maturation factor RimP, C-terminal vm_RS05055 09e293d122e10bda4fce2937742deba5 373 Pfam PF01612 3'-5' exonuclease 3 170 2.3E-36 T 11-11-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 vm_RS05055 09e293d122e10bda4fce2937742deba5 373 SUPERFAMILY SSF53098 2 209 8.43E-65 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS05055 09e293d122e10bda4fce2937742deba5 373 Gene3D G3DSA:3.30.420.10 2 177 5.0E-15 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS05055 09e293d122e10bda4fce2937742deba5 373 TIGRFAM TIGR01388 rnd: ribonuclease D 5 372 2.6E-162 T 11-11-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 vm_RS05055 09e293d122e10bda4fce2937742deba5 373 SUPERFAMILY SSF47819 193 300 5.76E-21 T 11-11-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 vm_RS05055 09e293d122e10bda4fce2937742deba5 373 SMART SM00474 3 171 7.5E-38 T 11-11-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 vm_RS05055 09e293d122e10bda4fce2937742deba5 373 Pfam PF00570 HRDC domain 213 279 1.5E-7 T 11-11-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 vm_RS05055 09e293d122e10bda4fce2937742deba5 373 Hamap MF_01899 Ribonuclease D [rnd]. 3 372 43.531 T 11-11-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 vm_RS05055 09e293d122e10bda4fce2937742deba5 373 SUPERFAMILY SSF47819 296 371 5.23E-21 T 11-11-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 vm_RS03150 42d1620c7de64ae8ec99a5465929c2c5 226 SMART SM00986 49 210 2.2E-39 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 vm_RS03150 42d1620c7de64ae8ec99a5465929c2c5 226 SMART SM00987 49 210 2.2E-39 T 11-11-2016 vm_RS03150 42d1620c7de64ae8ec99a5465929c2c5 226 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 57 66 - T 11-11-2016 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 vm_RS03150 42d1620c7de64ae8ec99a5465929c2c5 226 SUPERFAMILY SSF52141 6 221 5.67E-97 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 vm_RS03150 42d1620c7de64ae8ec99a5465929c2c5 226 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 6 214 2.2E-88 T 11-11-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 vm_RS03150 42d1620c7de64ae8ec99a5465929c2c5 226 Gene3D G3DSA:3.40.470.10 6 221 3.4E-102 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 vm_RS03150 42d1620c7de64ae8ec99a5465929c2c5 226 Pfam PF03167 Uracil DNA glycosylase superfamily 55 209 2.4E-25 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 vm_RS03150 42d1620c7de64ae8ec99a5465929c2c5 226 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 4 221 40.373 T 11-11-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 vm_RS14370 92497609ad4f4404f4576eaf656ae428 314 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 1 314 55.651 T 11-11-2016 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 vm_RS14370 92497609ad4f4404f4576eaf656ae428 314 Pfam PF01370 NAD dependent epimerase/dehydratase family 2 241 3.1E-46 T 11-11-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 vm_RS14370 92497609ad4f4404f4576eaf656ae428 314 Gene3D G3DSA:3.40.50.720 2 176 8.7E-18 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14370 92497609ad4f4404f4576eaf656ae428 314 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 2 313 7.7E-125 T 11-11-2016 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20 vm_RS14370 92497609ad4f4404f4576eaf656ae428 314 Gene3D G3DSA:3.90.25.10 177 294 2.9E-37 T 11-11-2016 vm_RS14370 92497609ad4f4404f4576eaf656ae428 314 SUPERFAMILY SSF51735 1 308 1.01E-57 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS09965 5521ef5313619f49fcf98b0855c523e3 81 Pfam PF02597 ThiS family 4 81 4.3E-24 T 11-11-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 vm_RS09965 5521ef5313619f49fcf98b0855c523e3 81 SUPERFAMILY SSF54285 1 81 2.62E-23 T 11-11-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp vm_RS09965 5521ef5313619f49fcf98b0855c523e3 81 Gene3D G3DSA:3.10.20.30 1 81 5.0E-27 T 11-11-2016 IPR012675 Beta-grasp domain vm_RS09965 5521ef5313619f49fcf98b0855c523e3 81 TIGRFAM TIGR01682 moaD: molybdopterin converting factor, subunit 1 2 81 1.2E-22 T 11-11-2016 IPR010034 Molybdopterin converting factor, subunit 1 GO:0006777 Reactome: R-HSA-947581 vm_RS01700 94e769eb3c10296e4dee979bd5d6a271 273 SMART SM00971 9 113 1.2E-60 T 11-11-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 vm_RS01700 94e769eb3c10296e4dee979bd5d6a271 273 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 82 242 9.9E-76 T 11-11-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 vm_RS01700 94e769eb3c10296e4dee979bd5d6a271 273 Pfam PF06426 Serine acetyltransferase, N-terminal 9 112 1.4E-38 T 11-11-2016 IPR010493 Serine acetyltransferase, N-terminal GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 vm_RS01700 94e769eb3c10296e4dee979bd5d6a271 273 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 193 226 1.6E-9 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS01700 94e769eb3c10296e4dee979bd5d6a271 273 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 202 230 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 vm_RS01700 94e769eb3c10296e4dee979bd5d6a271 273 Gene3D G3DSA:1.10.3130.10 7 142 1.2E-47 T 11-11-2016 vm_RS01700 94e769eb3c10296e4dee979bd5d6a271 273 SUPERFAMILY SSF51161 6 260 9.56E-65 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS01700 94e769eb3c10296e4dee979bd5d6a271 273 Gene3D G3DSA:2.160.10.10 143 251 1.4E-32 T 11-11-2016 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 Gene3D G3DSA:3.30.70.1430 40 140 9.0E-30 T 11-11-2016 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 Gene3D G3DSA:1.10.3850.10 796 1008 3.2E-63 T 11-11-2016 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 1.3E-279 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 SUPERFAMILY SSF82714 704 787 1.44E-16 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 SUPERFAMILY SSF82693 139 181 7.59E-19 T 11-11-2016 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 SUPERFAMILY SSF82693 268 324 7.59E-19 T 11-11-2016 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 SUPERFAMILY SSF82866 792 1009 7.72E-48 T 11-11-2016 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 Gene3D G3DSA:3.30.70.1430 556 653 2.0E-15 T 11-11-2016 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 SUPERFAMILY SSF82866 290 490 6.8E-46 T 11-11-2016 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 Gene3D G3DSA:3.30.2090.10 183 268 2.0E-15 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 SUPERFAMILY SSF82714 183 266 1.23E-13 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 Gene3D G3DSA:3.30.2090.10 703 788 1.7E-18 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 SUPERFAMILY SSF82693 40 134 1.1E-25 T 11-11-2016 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 SUPERFAMILY SSF82693 554 657 1.36E-16 T 11-11-2016 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 Gene3D G3DSA:1.20.1640.10 286 498 1.0E-57 T 11-11-2016 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 PRINTS PR00702 Acriflavin resistance protein family signature 541 558 1.2E-70 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 1.2E-70 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 1.2E-70 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 PRINTS PR00702 Acriflavin resistance protein family signature 611 625 1.2E-70 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 1.2E-70 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 1.2E-70 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.2E-70 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 1.2E-70 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS10540 d237a349e4af32730d4d90e2750fd4fb 1036 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.2E-70 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS02330 72f1f42ed04e5caaf00a67bf23f4c823 267 SUPERFAMILY SSF52540 6 240 3.15E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02330 72f1f42ed04e5caaf00a67bf23f4c823 267 Gene3D G3DSA:3.40.50.300 3 236 3.7E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02330 72f1f42ed04e5caaf00a67bf23f4c823 267 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS02330 72f1f42ed04e5caaf00a67bf23f4c823 267 SMART SM00382 31 227 2.9E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS02330 72f1f42ed04e5caaf00a67bf23f4c823 267 Pfam PF00005 ABC transporter 23 170 4.2E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS02870 045feb2b60a9200d1b43861115955e10 296 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 28 294 1.2E-92 T 11-11-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|Reactome: R-HSA-196807 vm_RS02870 045feb2b60a9200d1b43861115955e10 296 Gene3D G3DSA:3.90.1170.20 16 149 1.7E-50 T 11-11-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 vm_RS02870 045feb2b60a9200d1b43861115955e10 296 SUPERFAMILY SSF51690 130 294 3.57E-60 T 11-11-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 vm_RS02870 045feb2b60a9200d1b43861115955e10 296 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 130 293 1.2E-58 T 11-11-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 vm_RS02870 045feb2b60a9200d1b43861115955e10 296 PIRSF PIRSF006250 16 296 1.5E-98 T 11-11-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Reactome: R-HSA-196807 vm_RS02870 045feb2b60a9200d1b43861115955e10 296 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 41 127 1.0E-25 T 11-11-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 vm_RS02870 045feb2b60a9200d1b43861115955e10 296 Gene3D G3DSA:3.20.20.70 150 283 3.2E-59 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS02870 045feb2b60a9200d1b43861115955e10 296 SUPERFAMILY SSF54675 13 128 5.89E-32 T 11-11-2016 vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 SMART SM01211 1041 1296 5.6E-159 T 11-11-2016 vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 SUPERFAMILY SSF55326 619 816 2.2E-69 T 11-11-2016 vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1297 21.413 T 11-11-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 Gene3D G3DSA:3.30.1330.10 211 421 5.4E-39 T 11-11-2016 IPR016188 PurM-like, N-terminal domain vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 Gene3D G3DSA:3.30.1330.10 646 810 1.5E-16 T 11-11-2016 IPR016188 PurM-like, N-terminal domain vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 SUPERFAMILY SSF109736 155 220 1.7E-21 T 11-11-2016 vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 Pfam PF02769 AIR synthase related protein, C-terminal domain 834 965 5.2E-14 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 Pfam PF02769 AIR synthase related protein, C-terminal domain 432 589 5.4E-28 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1295 0.0 T 11-11-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 SUPERFAMILY SSF56042 432 615 9.72E-54 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 SUPERFAMILY SSF52317 1037 1296 2.67E-99 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 SUPERFAMILY SSF82697 1 151 3.03E-52 T 11-11-2016 vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 SUPERFAMILY SSF55326 221 428 3.24E-64 T 11-11-2016 vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1041 1295 1.5E-108 T 11-11-2016 vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 SUPERFAMILY SSF56042 825 1035 1.48E-53 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain vm_RS10780 c1358a6539c900796a5bf8f21812c3d2 1297 Gene3D G3DSA:3.40.50.880 1042 1266 4.8E-14 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS09290 a0a017bd0fba188fcdb1f89262966869 384 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 22 377 1.0E-141 T 11-11-2016 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 vm_RS09290 a0a017bd0fba188fcdb1f89262966869 384 Gene3D G3DSA:3.90.1150.10 269 380 9.8E-24 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS09290 a0a017bd0fba188fcdb1f89262966869 384 Pfam PF00155 Aminotransferase class I and II 43 374 4.7E-53 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 vm_RS09290 a0a017bd0fba188fcdb1f89262966869 384 Gene3D G3DSA:3.40.640.10 60 268 1.3E-79 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS09290 a0a017bd0fba188fcdb1f89262966869 384 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 232 241 - T 11-11-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 vm_RS09290 a0a017bd0fba188fcdb1f89262966869 384 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 5 380 46.889 T 11-11-2016 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147 vm_RS09290 a0a017bd0fba188fcdb1f89262966869 384 SUPERFAMILY SSF53383 5 379 8.29E-96 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS03220 4a2c07bc6423865e497a152dd8a26ee4 326 Pfam PF00702 haloacid dehalogenase-like hydrolase 107 279 2.9E-15 T 11-11-2016 vm_RS03220 4a2c07bc6423865e497a152dd8a26ee4 326 Gene3D G3DSA:3.40.50.1000 169 297 3.2E-36 T 11-11-2016 IPR023214 HAD-like domain vm_RS03220 4a2c07bc6423865e497a152dd8a26ee4 326 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 107 277 1.9E-25 T 11-11-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 vm_RS03220 4a2c07bc6423865e497a152dd8a26ee4 326 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 101 310 4.8E-85 T 11-11-2016 vm_RS03220 4a2c07bc6423865e497a152dd8a26ee4 326 SUPERFAMILY SSF56784 104 310 7.57E-48 T 11-11-2016 IPR023214 HAD-like domain vm_RS03220 4a2c07bc6423865e497a152dd8a26ee4 326 Gene3D G3DSA:1.10.150.210 117 168 2.7E-27 T 11-11-2016 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|Reactome: R-HSA-977347 vm_RS09765 bd33441d4c1e6b642627044841034abb 207 Pfam PF08722 TnsA endonuclease N terminal 44 120 3.0E-9 T 11-11-2016 IPR014833 TnsA endonuclease, N-terminal vm_RS11875 744e67b50887487f8f3bf288495533db 416 Hamap MF_00967 ATP-dependent RNA helicase SrmB [srmB]. 3 416 51.034 T 11-11-2016 IPR028621 ATP-dependent RNA helicase SrmB GO:0000027|GO:0004004 vm_RS11875 744e67b50887487f8f3bf288495533db 416 SMART SM00487 22 222 2.0E-56 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS11875 744e67b50887487f8f3bf288495533db 416 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 11-11-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site vm_RS11875 744e67b50887487f8f3bf288495533db 416 Gene3D G3DSA:3.40.50.300 214 371 5.0E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11875 744e67b50887487f8f3bf288495533db 416 SUPERFAMILY SSF52540 34 352 5.12E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11875 744e67b50887487f8f3bf288495533db 416 Gene3D G3DSA:3.40.50.300 2 213 6.7E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11875 744e67b50887487f8f3bf288495533db 416 Pfam PF00271 Helicase conserved C-terminal domain 234 341 3.4E-31 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS11875 744e67b50887487f8f3bf288495533db 416 SMART SM00490 260 341 2.4E-32 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS11875 744e67b50887487f8f3bf288495533db 416 Pfam PF00270 DEAD/DEAH box helicase 27 195 1.7E-45 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 Gene3D G3DSA:3.40.50.740 118 225 1.1E-67 T 11-11-2016 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 Gene3D G3DSA:3.40.50.740 447 581 1.1E-67 T 11-11-2016 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 Gene3D G3DSA:2.40.40.20 641 674 5.9E-56 T 11-11-2016 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 Gene3D G3DSA:2.40.40.20 812 951 5.9E-56 T 11-11-2016 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 Gene3D G3DSA:2.40.40.20 768 779 5.9E-56 T 11-11-2016 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 SMART SM00926 61 115 3.9E-16 T 11-11-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 Pfam PF00384 Molybdopterin oxidoreductase 118 568 1.8E-52 T 11-11-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 SUPERFAMILY SSF53706 59 646 2.22E-200 T 11-11-2016 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 Pfam PF01568 Molydopterin dinucleotide binding domain 818 944 1.1E-20 T 11-11-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 66 83 - T 11-11-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 62 112 1.8E-11 T 11-11-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 Gene3D G3DSA:2.20.25.90 58 115 5.2E-18 T 11-11-2016 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 SUPERFAMILY SSF50692 752 782 7.05E-39 T 11-11-2016 IPR009010 Aspartate decarboxylase-like domain vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 SUPERFAMILY SSF50692 813 951 7.05E-39 T 11-11-2016 IPR009010 Aspartate decarboxylase-like domain vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 Gene3D G3DSA:3.40.228.10 343 384 1.0E-29 T 11-11-2016 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 Gene3D G3DSA:3.40.228.10 226 296 1.0E-29 T 11-11-2016 vm_RS07370 ad99ce1cf64a5f93d12765ccec573921 951 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 19 47 1.1E-4 T 11-11-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal vm_RS07730 aaa5d7148a04bb10764fb01e0b44e0d5 294 Pfam PF12833 Helix-turn-helix domain 209 286 1.9E-17 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS07730 aaa5d7148a04bb10764fb01e0b44e0d5 294 Gene3D G3DSA:2.60.120.280 40 173 7.8E-10 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 vm_RS07730 aaa5d7148a04bb10764fb01e0b44e0d5 294 SMART SM00342 203 286 9.2E-23 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS07730 aaa5d7148a04bb10764fb01e0b44e0d5 294 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 270 286 1.5E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS07730 aaa5d7148a04bb10764fb01e0b44e0d5 294 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 270 1.5E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS07730 aaa5d7148a04bb10764fb01e0b44e0d5 294 TIGRFAM TIGR02297 HpaA: 4-hydroxyphenylacetate catabolism regulatory protein HpaA 6 287 9.8E-137 T 11-11-2016 IPR011983 4-hydroxyphenylacetate catabolism regulatory protein HpaA vm_RS07730 aaa5d7148a04bb10764fb01e0b44e0d5 294 SUPERFAMILY SSF46689 241 286 3.23E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS07730 aaa5d7148a04bb10764fb01e0b44e0d5 294 Pfam PF02311 AraC-like ligand binding domain 38 161 2.1E-10 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 vm_RS07730 aaa5d7148a04bb10764fb01e0b44e0d5 294 SUPERFAMILY SSF51215 37 171 4.58E-12 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 vm_RS07730 aaa5d7148a04bb10764fb01e0b44e0d5 294 Gene3D G3DSA:1.10.10.60 241 288 5.9E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS05690 97a402abd888e8ab0f0e27ae8e2db57c 236 Pfam PF00072 Response regulator receiver domain 7 116 2.5E-33 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS05690 97a402abd888e8ab0f0e27ae8e2db57c 236 Gene3D G3DSA:1.10.10.10 133 229 1.4E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05690 97a402abd888e8ab0f0e27ae8e2db57c 236 SUPERFAMILY SSF46894 133 229 2.04E-18 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS05690 97a402abd888e8ab0f0e27ae8e2db57c 236 SMART SM00448 5 115 5.1E-48 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS05690 97a402abd888e8ab0f0e27ae8e2db57c 236 SMART SM00862 153 228 5.7E-16 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS05690 97a402abd888e8ab0f0e27ae8e2db57c 236 SUPERFAMILY SSF52172 2 130 5.83E-45 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS05690 97a402abd888e8ab0f0e27ae8e2db57c 236 Gene3D G3DSA:3.40.50.2300 4 127 5.0E-45 T 11-11-2016 vm_RS05690 97a402abd888e8ab0f0e27ae8e2db57c 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 158 228 3.5E-18 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS13335 8834b0a1959fc32dc3dd6a3a73301c2f 69 Gene3D G3DSA:1.10.260.40 3 68 1.8E-20 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS13335 8834b0a1959fc32dc3dd6a3a73301c2f 69 Pfam PF01381 Helix-turn-helix 13 67 2.8E-15 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 vm_RS13335 8834b0a1959fc32dc3dd6a3a73301c2f 69 SMART SM00530 12 67 2.1E-13 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 vm_RS13335 8834b0a1959fc32dc3dd6a3a73301c2f 69 SUPERFAMILY SSF47413 7 68 2.43E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS14205 37bf9f7f730afdb7567305ac99c52d38 201 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 3 200 1.1E-85 T 11-11-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 vm_RS14205 37bf9f7f730afdb7567305ac99c52d38 201 SUPERFAMILY SSF51569 2 199 8.42E-66 T 11-11-2016 vm_RS14205 37bf9f7f730afdb7567305ac99c52d38 201 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 35 44 - T 11-11-2016 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 vm_RS14205 37bf9f7f730afdb7567305ac99c52d38 201 Gene3D G3DSA:3.20.20.70 1 200 2.8E-75 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS14205 37bf9f7f730afdb7567305ac99c52d38 201 Pfam PF01081 KDPG and KHG aldolase 3 196 2.2E-74 T 11-11-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 vm_RS14205 37bf9f7f730afdb7567305ac99c52d38 201 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 123 136 - T 11-11-2016 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 vm_RS06270 9ed62787db13bb6c97e96b12b7f70869 72 Gene3D G3DSA:2.40.50.140 1 71 4.6E-39 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS06270 9ed62787db13bb6c97e96b12b7f70869 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.238 T 11-11-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 vm_RS06270 9ed62787db13bb6c97e96b12b7f70869 72 SUPERFAMILY SSF50249 1 70 1.0E-28 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS06270 9ed62787db13bb6c97e96b12b7f70869 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 1.7E-27 T 11-11-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 vm_RS06270 9ed62787db13bb6c97e96b12b7f70869 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 1.9E-38 T 11-11-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 vm_RS06270 9ed62787db13bb6c97e96b12b7f70869 72 SMART SM00316 4 72 3.7E-6 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 SUPERFAMILY SSF53955 116 268 1.69E-42 T 11-11-2016 IPR023346 Lysozyme-like domain vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 Gene3D G3DSA:3.10.350.10 346 392 8.1E-16 T 11-11-2016 IPR018392 LysM domain vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 Gene3D G3DSA:3.10.350.10 421 467 4.1E-17 T 11-11-2016 IPR018392 LysM domain vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 Gene3D G3DSA:3.10.350.10 477 523 1.1E-17 T 11-11-2016 IPR018392 LysM domain vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 SUPERFAMILY SSF54106 421 466 6.28E-11 T 11-11-2016 IPR018392 LysM domain vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 SMART SM00257 479 523 4.6E-13 T 11-11-2016 IPR018392 LysM domain vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 SMART SM00257 422 466 4.0E-13 T 11-11-2016 IPR018392 LysM domain vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 SMART SM00257 348 391 5.8E-13 T 11-11-2016 IPR018392 LysM domain vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 Pfam PF01464 Transglycosylase SLT domain 127 231 4.6E-24 T 11-11-2016 IPR008258 Transglycosylase SLT domain 1 vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 SUPERFAMILY SSF54106 347 391 9.94E-11 T 11-11-2016 IPR018392 LysM domain vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 138 166 - T 11-11-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 Pfam PF01476 LysM domain 423 465 1.6E-11 T 11-11-2016 IPR018392 LysM domain vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 Pfam PF01476 LysM domain 349 391 2.6E-11 T 11-11-2016 IPR018392 LysM domain vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 Pfam PF01476 LysM domain 480 521 1.6E-11 T 11-11-2016 IPR018392 LysM domain vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 Gene3D G3DSA:1.10.530.10 114 276 8.2E-47 T 11-11-2016 vm_RS03710 4eb610a13793c91523be4b9a25ad3e61 531 SUPERFAMILY SSF54106 477 524 1.18E-10 T 11-11-2016 IPR018392 LysM domain vm_RS14245 f04e0e4ee1d8fc6dab1bd521d83b4369 530 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 9 530 2.5E-259 T 11-11-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 vm_RS14245 f04e0e4ee1d8fc6dab1bd521d83b4369 530 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 7 530 45.315 T 11-11-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 vm_RS14245 f04e0e4ee1d8fc6dab1bd521d83b4369 530 PIRSF PIRSF000414 1 530 6.0E-228 T 11-11-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 vm_RS14245 f04e0e4ee1d8fc6dab1bd521d83b4369 530 SUPERFAMILY SSF52335 7 196 9.03E-72 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain vm_RS14245 f04e0e4ee1d8fc6dab1bd521d83b4369 530 SMART SM00851 19 132 2.2E-61 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain vm_RS14245 f04e0e4ee1d8fc6dab1bd521d83b4369 530 Pfam PF01808 AICARFT/IMPCHase bienzyme 137 461 1.5E-117 T 11-11-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 vm_RS14245 f04e0e4ee1d8fc6dab1bd521d83b4369 530 Gene3D G3DSA:3.40.140.20 254 372 3.0E-49 T 11-11-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 vm_RS14245 f04e0e4ee1d8fc6dab1bd521d83b4369 530 Gene3D G3DSA:3.40.140.20 378 520 2.2E-60 T 11-11-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 vm_RS14245 f04e0e4ee1d8fc6dab1bd521d83b4369 530 Pfam PF02142 MGS-like domain 19 132 2.6E-30 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain vm_RS14245 f04e0e4ee1d8fc6dab1bd521d83b4369 530 SMART SM00798 137 462 4.6E-214 T 11-11-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 vm_RS14245 f04e0e4ee1d8fc6dab1bd521d83b4369 530 Gene3D G3DSA:3.40.50.1380 5 190 4.6E-87 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain vm_RS14245 f04e0e4ee1d8fc6dab1bd521d83b4369 530 SUPERFAMILY SSF53927 222 530 4.81E-129 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 vm_RS01820 9b8060945bc7754b466bc48ed0995db6 338 SUPERFAMILY SSF52374 5 334 1.45E-91 T 11-11-2016 vm_RS01820 9b8060945bc7754b466bc48ed0995db6 338 Gene3D G3DSA:1.10.240.10 209 328 8.2E-19 T 11-11-2016 vm_RS01820 9b8060945bc7754b466bc48ed0995db6 338 Gene3D G3DSA:3.40.50.620 4 208 5.9E-85 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS01820 9b8060945bc7754b466bc48ed0995db6 338 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 3 334 1.9E-107 T 11-11-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 vm_RS01820 9b8060945bc7754b466bc48ed0995db6 338 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 3 335 40.393 T 11-11-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 vm_RS01820 9b8060945bc7754b466bc48ed0995db6 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 5.1E-26 T 11-11-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 vm_RS01820 9b8060945bc7754b466bc48ed0995db6 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 198 208 5.1E-26 T 11-11-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 vm_RS01820 9b8060945bc7754b466bc48ed0995db6 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 142 163 5.1E-26 T 11-11-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 vm_RS01820 9b8060945bc7754b466bc48ed0995db6 338 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 16 32 5.1E-26 T 11-11-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 vm_RS01820 9b8060945bc7754b466bc48ed0995db6 338 Pfam PF00579 tRNA synthetases class I (W and Y) 3 289 3.5E-77 T 11-11-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 ProSitePatterns PS01126 Elongation factor Ts signature 1. 11 26 - T 11-11-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 Gene3D G3DSA:3.30.479.20 56 92 1.2E-26 T 11-11-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 Gene3D G3DSA:3.30.479.20 225 263 1.2E-26 T 11-11-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 Gene3D G3DSA:3.30.479.20 164 179 1.2E-26 T 11-11-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 Gene3D G3DSA:1.10.286.20 180 224 1.2E-19 T 11-11-2016 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 SUPERFAMILY SSF46934 3 53 1.53E-18 T 11-11-2016 IPR009060 UBA-like GO:0005515 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 279 2.8E-102 T 11-11-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 SUPERFAMILY SSF54713 55 137 6.21E-19 T 11-11-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 Pfam PF00889 Elongation factor TS 70 260 9.8E-60 T 11-11-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 Gene3D G3DSA:1.10.8.10 1 54 1.0E-27 T 11-11-2016 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 Hamap MF_00050 Elongation factor Ts [tsf]. 1 279 75.239 T 11-11-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 SUPERFAMILY SSF54713 141 277 3.79E-44 T 11-11-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS03610 66725f9d0d076eebaeb79ade6a321844 280 ProSitePatterns PS01127 Elongation factor Ts signature 2. 74 84 - T 11-11-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS08485 5968f362dab13fbd3c8a95362ef54f51 358 PIRSF PIRSF028101 1 358 5.5E-160 T 11-11-2016 IPR008311 Uncharacterised conserved protein UCP028101 vm_RS08485 5968f362dab13fbd3c8a95362ef54f51 358 Gene3D G3DSA:2.130.10.10 56 184 2.2E-6 T 11-11-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 vm_RS08485 5968f362dab13fbd3c8a95362ef54f51 358 SUPERFAMILY SSF50969 56 323 2.82E-11 T 11-11-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like vm_RS08485 5968f362dab13fbd3c8a95362ef54f51 358 Pfam PF07433 Protein of unknown function (DUF1513) 64 356 2.4E-113 T 11-11-2016 IPR008311 Uncharacterised conserved protein UCP028101 vm_RS01550 257b3c923c6d600c5a2c46c13880322a 388 SUPERFAMILY SSF53383 9 383 9.54E-113 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS01550 257b3c923c6d600c5a2c46c13880322a 388 TIGRFAM TIGR02080 O_succ_thio_ly: O-succinylhomoserine (thiol)-lyase 4 383 1.5E-208 T 11-11-2016 IPR011821 O-succinylhomoserine (thiol)-lyase KEGG: 00270+2.5.1.48|KEGG: 00450+2.5.1.48|KEGG: 00920+2.5.1.48 vm_RS01550 257b3c923c6d600c5a2c46c13880322a 388 Gene3D G3DSA:3.40.640.10 5 247 8.7E-83 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS01550 257b3c923c6d600c5a2c46c13880322a 388 Gene3D G3DSA:3.90.1150.10 250 384 2.6E-50 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS01550 257b3c923c6d600c5a2c46c13880322a 388 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 382 1.3E-133 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 vm_RS01550 257b3c923c6d600c5a2c46c13880322a 388 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 191 205 - T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 vm_RS01550 257b3c923c6d600c5a2c46c13880322a 388 PIRSF PIRSF001434 1 384 5.8E-128 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 vm_RS06995 b6feaa0971aec97bf2831fed378fcbbe 354 Gene3D G3DSA:2.70.98.10 15 351 6.1E-115 T 11-11-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 vm_RS06995 b6feaa0971aec97bf2831fed378fcbbe 354 SUPERFAMILY SSF74650 7 348 2.2E-106 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 vm_RS06995 b6feaa0971aec97bf2831fed378fcbbe 354 Pfam PF01263 Aldose 1-epimerase 21 347 2.5E-91 T 11-11-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 vm_RS06995 b6feaa0971aec97bf2831fed378fcbbe 354 TIGRFAM TIGR02636 galM_Leloir: galactose mutarotase 16 348 1.9E-138 T 11-11-2016 IPR013458 Aldose 1-epimerase, bacterial GO:0004034|GO:0006012 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 vm_RS06995 b6feaa0971aec97bf2831fed378fcbbe 354 PIRSF PIRSF005096 2 351 8.7E-115 T 11-11-2016 IPR015443 Aldose 1-epimerase GO:0016853|GO:0019318 KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 vm_RS06995 b6feaa0971aec97bf2831fed378fcbbe 354 ProSitePatterns PS00545 Aldose 1-epimerase putative active site. 174 183 - T 11-11-2016 IPR018052 Aldose 1-epimerase, conserved site KEGG: 00010+5.1.3.3|KEGG: 00052+5.1.3.3|MetaCyc: PWY-6317 vm_RS08090 1a3f3724a5d6c8a9656475ddc8048249 214 Gene3D G3DSA:3.40.30.10 3 97 5.3E-27 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS08090 1a3f3724a5d6c8a9656475ddc8048249 214 Gene3D G3DSA:1.20.1050.10 98 213 4.1E-49 T 11-11-2016 IPR010987 Glutathione S-transferase, C-terminal-like vm_RS08090 1a3f3724a5d6c8a9656475ddc8048249 214 Pfam PF14497 Glutathione S-transferase, C-terminal domain 128 201 3.9E-5 T 11-11-2016 IPR004046 Glutathione S-transferase, C-terminal vm_RS08090 1a3f3724a5d6c8a9656475ddc8048249 214 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 4 213 3.8E-90 T 11-11-2016 IPR005955 Maleylacetoacetate isomerase GO:0003824|GO:0005737|GO:0009072 Reactome: R-HSA-156590|Reactome: R-HSA-71182 vm_RS08090 1a3f3724a5d6c8a9656475ddc8048249 214 SUPERFAMILY SSF52833 2 88 2.38E-22 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS08090 1a3f3724a5d6c8a9656475ddc8048249 214 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 83 2.0E-14 T 11-11-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 vm_RS08090 1a3f3724a5d6c8a9656475ddc8048249 214 SUPERFAMILY SSF47616 84 212 2.27E-30 T 11-11-2016 IPR010987 Glutathione S-transferase, C-terminal-like vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 Pfam PF02872 5'-nucleotidase, C-terminal domain 366 512 4.4E-34 T 11-11-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 PRINTS PR01607 Apyrase family signature 211 228 2.2E-53 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 PRINTS PR01607 Apyrase family signature 242 265 2.2E-53 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 PRINTS PR01607 Apyrase family signature 420 443 2.2E-53 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 PRINTS PR01607 Apyrase family signature 287 307 2.2E-53 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 PRINTS PR01607 Apyrase family signature 487 506 2.2E-53 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 PRINTS PR01607 Apyrase family signature 36 54 2.2E-53 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 ProSitePatterns PS00786 5'-nucleotidase signature 2. 113 124 - T 11-11-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 Gene3D G3DSA:3.90.780.10 367 541 5.4E-52 T 11-11-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 ProSitePatterns PS00785 5'-nucleotidase signature 1. 38 50 - T 11-11-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 Gene3D G3DSA:3.60.21.10 32 364 4.4E-104 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 SUPERFAMILY SSF55816 366 542 1.83E-51 T 11-11-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 SUPERFAMILY SSF56300 31 364 1.94E-101 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS04070 6be44423311e5e59661426b79fb8bf31 553 Pfam PF00149 Calcineurin-like phosphoesterase 38 259 7.8E-21 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 vm_RS06325 e9840220295dcd697dc1b8fcef8f73fa 229 Pfam PF09335 SNARE associated Golgi protein 65 181 1.8E-23 T 11-11-2016 IPR032816 SNARE associated Golgi protein vm_RS03020 6a8d579e805b546c13fc37bb3abc3b59 269 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 2 125 1.1E-41 T 11-11-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS03020 6a8d579e805b546c13fc37bb3abc3b59 269 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 128 264 2.1E-43 T 11-11-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS03020 6a8d579e805b546c13fc37bb3abc3b59 269 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 1 265 4.1E-101 T 11-11-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS03020 6a8d579e805b546c13fc37bb3abc3b59 269 PIRSF PIRSF000161 1 268 1.1E-90 T 11-11-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS03020 6a8d579e805b546c13fc37bb3abc3b59 269 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 150 167 - T 11-11-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS03020 6a8d579e805b546c13fc37bb3abc3b59 269 SUPERFAMILY SSF55347 127 236 2.4E-37 T 11-11-2016 vm_RS03020 6a8d579e805b546c13fc37bb3abc3b59 269 Gene3D G3DSA:3.40.50.720 1 163 1.9E-60 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03020 6a8d579e805b546c13fc37bb3abc3b59 269 SUPERFAMILY SSF51735 236 268 1.01E-52 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03020 6a8d579e805b546c13fc37bb3abc3b59 269 SUPERFAMILY SSF51735 1 126 1.01E-52 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03020 6a8d579e805b546c13fc37bb3abc3b59 269 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 265 35.81 T 11-11-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 SMART SM00091 98 166 6.0E-5 T 11-11-2016 IPR000014 PAS domain vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 SMART SM00388 205 272 3.6E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 Pfam PF00989 PAS fold 99 153 3.4E-7 T 11-11-2016 IPR013767 PAS fold GO:0006355 vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 Gene3D G3DSA:3.30.565.10 259 427 2.2E-41 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 Gene3D G3DSA:3.30.450.20 98 196 8.9E-11 T 11-11-2016 vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 Pfam PF00512 His Kinase A (phospho-acceptor) domain 205 271 2.9E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 SUPERFAMILY SSF55785 86 197 1.13E-10 T 11-11-2016 IPR000014 PAS domain vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 SUPERFAMILY SSF55874 261 427 2.23E-40 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 SMART SM00387 317 429 1.7E-33 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 Pfam PF11808 Domain of unknown function (DUF3329) 7 91 1.2E-31 T 11-11-2016 IPR021766 Protein of unknown function DUF3329 GO:0004673 vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 318 427 3.4E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 94 424 3.9E-136 T 11-11-2016 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 SUPERFAMILY SSF47384 192 272 1.16E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 Gene3D G3DSA:1.10.287.130 197 258 1.1E-19 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 368 2.0E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 382 2.0E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 407 2.0E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS11560 9e95082d5cd609e11f7aa42a723b0e82 433 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 426 2.0E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS01920 2e50cf32ec8c7fc432c97337948ceb6e 326 Pfam PF01112 Asparaginase 6 323 1.0E-109 T 11-11-2016 IPR000246 Peptidase T2, asparaginase 2 GO:0016787 vm_RS01920 2e50cf32ec8c7fc432c97337948ceb6e 326 SUPERFAMILY SSF56235 5 156 2.54E-97 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS01920 2e50cf32ec8c7fc432c97337948ceb6e 326 SUPERFAMILY SSF56235 188 322 2.54E-97 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS03620 024a21383ee21364df56505e2195a868 185 SUPERFAMILY SSF55194 2 184 9.55E-73 T 11-11-2016 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 vm_RS03620 024a21383ee21364df56505e2195a868 185 Pfam PF01765 Ribosome recycling factor 20 183 3.2E-63 T 11-11-2016 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 vm_RS03620 024a21383ee21364df56505e2195a868 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.702 T 11-11-2016 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 vm_RS03620 024a21383ee21364df56505e2195a868 185 Gene3D G3DSA:1.10.132.20 67 185 1.9E-45 T 11-11-2016 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 vm_RS03620 024a21383ee21364df56505e2195a868 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 2.6E-76 T 11-11-2016 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 vm_RS13735 97ae9931e7fb18702b1a9afca5f81386 100 Hamap MF_00720 Primosomal replication protein n [priB]. 1 100 27.223 T 11-11-2016 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 vm_RS13735 97ae9931e7fb18702b1a9afca5f81386 100 PIRSF PIRSF003135 1 100 3.6E-45 T 11-11-2016 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 vm_RS13735 97ae9931e7fb18702b1a9afca5f81386 100 SUPERFAMILY SSF50249 1 99 2.43E-26 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS13735 97ae9931e7fb18702b1a9afca5f81386 100 TIGRFAM TIGR04418 PriB_gamma: primosomal replication protein PriB 3 100 1.3E-32 T 11-11-2016 IPR023646 Primosomal replication protein PriB GO:0003697|GO:0006260|GO:0030894 vm_RS13735 97ae9931e7fb18702b1a9afca5f81386 100 Pfam PF00436 Single-strand binding protein family 3 88 1.4E-10 T 11-11-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 vm_RS13735 97ae9931e7fb18702b1a9afca5f81386 100 Gene3D G3DSA:2.40.50.140 1 99 4.4E-35 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS03860 e7dfc48e5aba5881bae0aa00bc69fe04 308 Pfam PF01584 CheW-like domain 21 155 4.8E-34 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS03860 e7dfc48e5aba5881bae0aa00bc69fe04 308 SMART SM00260 17 153 4.3E-24 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS03860 e7dfc48e5aba5881bae0aa00bc69fe04 308 Pfam PF00072 Response regulator receiver domain 184 302 4.8E-19 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS03860 e7dfc48e5aba5881bae0aa00bc69fe04 308 SMART SM00448 182 302 5.7E-21 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS03860 e7dfc48e5aba5881bae0aa00bc69fe04 308 SUPERFAMILY SSF50341 16 157 2.09E-35 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS03860 e7dfc48e5aba5881bae0aa00bc69fe04 308 SUPERFAMILY SSF52172 183 306 1.57E-26 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS03860 e7dfc48e5aba5881bae0aa00bc69fe04 308 Gene3D G3DSA:3.40.50.2300 182 306 4.8E-28 T 11-11-2016 vm_RS03860 e7dfc48e5aba5881bae0aa00bc69fe04 308 Gene3D G3DSA:2.30.30.40 86 144 9.9E-5 T 11-11-2016 vm_RS03860 e7dfc48e5aba5881bae0aa00bc69fe04 308 PIRSF PIRSF002867 1 308 5.2E-103 T 11-11-2016 IPR024181 Chemotaxis response regulator CheV vm_RS03545 52fe0dccca42f433ab77679daa43b6eb 416 PIRSF PIRSF000151 1 416 6.4E-165 T 11-11-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 vm_RS03545 52fe0dccca42f433ab77679daa43b6eb 416 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 322 343 - T 11-11-2016 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 vm_RS03545 52fe0dccca42f433ab77679daa43b6eb 416 Pfam PF00171 Aldehyde dehydrogenase family 8 279 2.7E-14 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 vm_RS03545 52fe0dccca42f433ab77679daa43b6eb 416 Gene3D G3DSA:3.40.309.10 224 373 3.0E-34 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 vm_RS03545 52fe0dccca42f433ab77679daa43b6eb 416 Gene3D G3DSA:3.40.605.10 374 412 1.3E-99 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 vm_RS03545 52fe0dccca42f433ab77679daa43b6eb 416 Gene3D G3DSA:3.40.605.10 5 221 1.3E-99 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 vm_RS03545 52fe0dccca42f433ab77679daa43b6eb 416 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 10 405 3.0E-166 T 11-11-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 vm_RS03545 52fe0dccca42f433ab77679daa43b6eb 416 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 2 415 38.985 T 11-11-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 vm_RS03545 52fe0dccca42f433ab77679daa43b6eb 416 SUPERFAMILY SSF53720 4 408 4.97E-111 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 vm_RS02865 f09fc6a2c3297c9e8f23d949676e5c3c 149 Pfam PF13633 Prokaryotic N-terminal methylation site 9 33 1.1E-11 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS02865 f09fc6a2c3297c9e8f23d949676e5c3c 149 PRINTS PR00813 Bacterial general secretion pathway protein G signature 47 65 2.4E-10 T 11-11-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 vm_RS02865 f09fc6a2c3297c9e8f23d949676e5c3c 149 PRINTS PR00813 Bacterial general secretion pathway protein G signature 11 36 2.4E-10 T 11-11-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 vm_RS02865 f09fc6a2c3297c9e8f23d949676e5c3c 149 Gene3D G3DSA:3.30.700.10 12 143 4.2E-30 T 11-11-2016 vm_RS02865 f09fc6a2c3297c9e8f23d949676e5c3c 149 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS02865 f09fc6a2c3297c9e8f23d949676e5c3c 149 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 32 2.4E-10 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS02865 f09fc6a2c3297c9e8f23d949676e5c3c 149 SUPERFAMILY SSF54523 12 143 1.67E-22 T 11-11-2016 vm_RS02865 f09fc6a2c3297c9e8f23d949676e5c3c 149 Pfam PF00114 Pilin (bacterial filament) 40 144 1.6E-14 T 11-11-2016 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 vm_RS04935 977db9617961a4e86b29bcf67525a998 314 Pfam PF00072 Response regulator receiver domain 186 303 9.5E-15 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS04935 977db9617961a4e86b29bcf67525a998 314 Gene3D G3DSA:2.30.30.40 98 135 1.8E-4 T 11-11-2016 vm_RS04935 977db9617961a4e86b29bcf67525a998 314 SMART SM00260 17 158 3.4E-28 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS04935 977db9617961a4e86b29bcf67525a998 314 SMART SM00448 184 305 1.1E-10 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS04935 977db9617961a4e86b29bcf67525a998 314 Gene3D G3DSA:2.40.50.180 61 97 5.8E-6 T 11-11-2016 vm_RS04935 977db9617961a4e86b29bcf67525a998 314 Pfam PF01584 CheW-like domain 21 160 3.2E-36 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS04935 977db9617961a4e86b29bcf67525a998 314 Gene3D G3DSA:3.40.50.2300 181 310 2.9E-24 T 11-11-2016 vm_RS04935 977db9617961a4e86b29bcf67525a998 314 PIRSF PIRSF002867 1 312 1.7E-106 T 11-11-2016 IPR024181 Chemotaxis response regulator CheV vm_RS04935 977db9617961a4e86b29bcf67525a998 314 SUPERFAMILY SSF50341 16 163 4.45E-34 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS04935 977db9617961a4e86b29bcf67525a998 314 SUPERFAMILY SSF52172 179 310 1.71E-22 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS08025 44f349c872ef5f4c5ea8dd0a55cd87b5 342 SMART SM00062 38 267 3.4E-55 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS08025 44f349c872ef5f4c5ea8dd0a55cd87b5 342 Gene3D G3DSA:3.40.190.10 129 207 2.6E-14 T 11-11-2016 vm_RS08025 44f349c872ef5f4c5ea8dd0a55cd87b5 342 Gene3D G3DSA:3.40.190.10 37 128 1.4E-16 T 11-11-2016 vm_RS08025 44f349c872ef5f4c5ea8dd0a55cd87b5 342 Gene3D G3DSA:3.40.190.10 227 257 1.4E-16 T 11-11-2016 vm_RS08025 44f349c872ef5f4c5ea8dd0a55cd87b5 342 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 257 1.4E-29 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS08025 44f349c872ef5f4c5ea8dd0a55cd87b5 342 SUPERFAMILY SSF53850 29 261 1.79E-49 T 11-11-2016 vm_RS15055 5a83cfdaefe5067bce4145adfab5fb53 118 SUPERFAMILY SSF54211 4 114 3.03E-30 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS15055 5a83cfdaefe5067bce4145adfab5fb53 118 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 16 105 3.0E-46 T 11-11-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 vm_RS15055 5a83cfdaefe5067bce4145adfab5fb53 118 Pfam PF00825 Ribonuclease P 6 112 7.6E-32 T 11-11-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 vm_RS15055 5a83cfdaefe5067bce4145adfab5fb53 118 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 6 115 17.004 T 11-11-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 vm_RS15055 5a83cfdaefe5067bce4145adfab5fb53 118 Gene3D G3DSA:3.30.230.10 4 113 1.1E-32 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS15055 5a83cfdaefe5067bce4145adfab5fb53 118 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 6 113 1.3E-26 T 11-11-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 vm_RS06350 342f2cc28d89c1129dc009790bb2b769 461 Gene3D G3DSA:3.90.350.10 68 346 1.3E-92 T 11-11-2016 IPR014736 Transposase, Tn5-like, core vm_RS06350 342f2cc28d89c1129dc009790bb2b769 461 Gene3D G3DSA:1.10.740.10 348 458 7.5E-45 T 11-11-2016 IPR014737 Transposase, Tn5-like, C-terminal vm_RS06350 342f2cc28d89c1129dc009790bb2b769 461 Pfam PF02281 Transposase Tn5 dimerisation domain 360 454 5.5E-16 T 11-11-2016 IPR003201 Transposase Tn5, dimerisation vm_RS06350 342f2cc28d89c1129dc009790bb2b769 461 Pfam PF14706 Transposase DNA-binding 9 66 1.2E-20 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS06350 342f2cc28d89c1129dc009790bb2b769 461 Gene3D G3DSA:1.10.246.40 2 65 3.7E-26 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS06350 342f2cc28d89c1129dc009790bb2b769 461 SUPERFAMILY SSF53098 4 460 5.01E-127 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS00505 342f2cc28d89c1129dc009790bb2b769 461 Gene3D G3DSA:3.90.350.10 68 346 1.3E-92 T 11-11-2016 IPR014736 Transposase, Tn5-like, core vm_RS00505 342f2cc28d89c1129dc009790bb2b769 461 Gene3D G3DSA:1.10.740.10 348 458 7.5E-45 T 11-11-2016 IPR014737 Transposase, Tn5-like, C-terminal vm_RS00505 342f2cc28d89c1129dc009790bb2b769 461 Pfam PF02281 Transposase Tn5 dimerisation domain 360 454 5.5E-16 T 11-11-2016 IPR003201 Transposase Tn5, dimerisation vm_RS00505 342f2cc28d89c1129dc009790bb2b769 461 Pfam PF14706 Transposase DNA-binding 9 66 1.2E-20 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS00505 342f2cc28d89c1129dc009790bb2b769 461 Gene3D G3DSA:1.10.246.40 2 65 3.7E-26 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS00505 342f2cc28d89c1129dc009790bb2b769 461 SUPERFAMILY SSF53098 4 460 5.01E-127 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS12485 0a28ea1efebb0217d4f67b83b97849cf 168 Gene3D G3DSA:3.90.950.20 4 159 9.6E-55 T 11-11-2016 IPR008136 CinA, C-terminal vm_RS12485 0a28ea1efebb0217d4f67b83b97849cf 168 Pfam PF02464 Competence-damaged protein 6 158 2.1E-55 T 11-11-2016 IPR008136 CinA, C-terminal vm_RS12485 0a28ea1efebb0217d4f67b83b97849cf 168 SUPERFAMILY SSF142433 4 159 7.19E-54 T 11-11-2016 IPR008136 CinA, C-terminal vm_RS12485 0a28ea1efebb0217d4f67b83b97849cf 168 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 14 158 1.8E-49 T 11-11-2016 IPR008136 CinA, C-terminal vm_RS13175 951a2134eaa587ecc1d82a7fc6a8c9ea 780 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 9 752 20.961 T 11-11-2016 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 vm_RS13175 951a2134eaa587ecc1d82a7fc6a8c9ea 780 Pfam PF04453 Organic solvent tolerance protein 297 681 3.1E-114 T 11-11-2016 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 vm_RS13175 951a2134eaa587ecc1d82a7fc6a8c9ea 780 Gene3D G3DSA:2.60.450.10 50 204 1.6E-24 T 11-11-2016 vm_RS13175 951a2134eaa587ecc1d82a7fc6a8c9ea 780 Pfam PF03968 OstA-like protein 57 189 4.7E-19 T 11-11-2016 IPR005653 Organic solvent tolerance-like, N-terminal vm_RS01800 766873922fa128d0cf3d4da4585a4484 489 Pfam PF13401 AAA domain 29 152 8.8E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS01800 766873922fa128d0cf3d4da4585a4484 489 Gene3D G3DSA:3.40.50.300 26 155 7.2E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01800 766873922fa128d0cf3d4da4585a4484 489 Pfam PF05036 Sporulation related domain 402 475 1.3E-7 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 vm_RS01800 766873922fa128d0cf3d4da4585a4484 489 SUPERFAMILY SSF52540 27 188 4.22E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 Gene3D G3DSA:3.30.870.10 500 684 1.3E-70 T 11-11-2016 vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 7 677 2.7E-265 T 11-11-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 PIRSF PIRSF015589 1 697 8.0E-254 T 11-11-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 SUPERFAMILY SSF56024 315 493 1.48E-54 T 11-11-2016 vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 Gene3D G3DSA:3.30.1840.10 107 300 2.3E-52 T 11-11-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 Gene3D G3DSA:3.30.870.10 315 499 8.1E-72 T 11-11-2016 vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 Pfam PF13089 Polyphosphate kinase N-terminal domain 7 109 1.2E-31 T 11-11-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 SUPERFAMILY SSF140356 4 104 7.85E-34 T 11-11-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 Hamap MF_00347 Polyphosphate kinase [ppk]. 4 681 32.354 T 11-11-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 SUPERFAMILY SSF143724 107 313 1.96E-63 T 11-11-2016 vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 Pfam PF02503 Polyphosphate kinase middle domain 119 320 4.9E-46 T 11-11-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 SUPERFAMILY SSF56024 500 684 3.59E-68 T 11-11-2016 vm_RS11545 71113d97afe7d4af17188a70b48b1b9a 701 Pfam PF13090 Polyphosphate kinase C-terminal domain 331 676 1.5E-144 T 11-11-2016 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 ProSitePatterns PS00163 Fumarate lyases signature. 312 321 - T 11-11-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 Pfam PF10415 Fumarase C C-terminus 403 455 3.4E-18 T 11-11-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 PRINTS PR00145 Argininosuccinate lyase family signature 170 190 2.3E-6 T 11-11-2016 vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 PRINTS PR00145 Argininosuccinate lyase family signature 312 328 2.3E-6 T 11-11-2016 vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 PRINTS PR00145 Argininosuccinate lyase family signature 128 150 2.3E-6 T 11-11-2016 vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 Pfam PF00206 Lyase 13 337 4.0E-96 T 11-11-2016 IPR022761 Fumarate lyase, N-terminal vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 Hamap MF_00743 Fumarate hydratase class II [fumC]. 5 457 74.499 T 11-11-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 SUPERFAMILY SSF48557 5 455 1.26E-138 T 11-11-2016 IPR008948 L-Aspartase-like GO:0003824 vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 Gene3D G3DSA:1.20.200.10 134 413 3.9E-87 T 11-11-2016 vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 Gene3D G3DSA:1.10.275.10 4 133 3.9E-53 T 11-11-2016 IPR024083 Fumarase/histidase, N-terminal vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 PRINTS PR00149 Fumarate lyase superfamily signature 129 147 1.2E-31 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 PRINTS PR00149 Fumarate lyase superfamily signature 266 293 1.2E-31 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 PRINTS PR00149 Fumarate lyase superfamily signature 175 193 1.2E-31 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 PRINTS PR00149 Fumarate lyase superfamily signature 312 328 1.2E-31 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS07050 41bca783d7f65620d7476f5cfcd43554 461 Gene3D G3DSA:1.10.40.30 414 460 6.4E-20 T 11-11-2016 vm_RS13430 1044e7fa5ec230d78e6f5ad21770f710 489 SMART SM00316 37 122 5.6E-10 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS13430 1044e7fa5ec230d78e6f5ad21770f710 489 Pfam PF10150 Ribonuclease E/G family 124 393 1.1E-103 T 11-11-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 vm_RS13430 1044e7fa5ec230d78e6f5ad21770f710 489 SUPERFAMILY SSF50249 39 128 1.44E-19 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS13430 1044e7fa5ec230d78e6f5ad21770f710 489 Pfam PF00575 S1 RNA binding domain 38 109 5.6E-6 T 11-11-2016 IPR003029 S1 domain GO:0003676 vm_RS13430 1044e7fa5ec230d78e6f5ad21770f710 489 Gene3D G3DSA:2.40.50.140 30 128 3.3E-34 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS13430 1044e7fa5ec230d78e6f5ad21770f710 489 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 426 8.3E-173 T 11-11-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 vm_RS04350 cdc7c2f9184ddd053cffd398fbbc61de 376 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 7 353 8.4E-137 T 11-11-2016 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 vm_RS04350 cdc7c2f9184ddd053cffd398fbbc61de 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 10 32 2.0E-39 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 vm_RS04350 cdc7c2f9184ddd053cffd398fbbc61de 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 228 245 2.0E-39 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 vm_RS04350 cdc7c2f9184ddd053cffd398fbbc61de 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 272 287 2.0E-39 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 vm_RS04350 cdc7c2f9184ddd053cffd398fbbc61de 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 208 226 2.0E-39 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 vm_RS04350 cdc7c2f9184ddd053cffd398fbbc61de 376 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 302 323 2.0E-39 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 vm_RS04350 cdc7c2f9184ddd053cffd398fbbc61de 376 Gene3D G3DSA:3.40.1690.10 218 357 6.8E-61 T 11-11-2016 IPR029025 Type III secretion system substrate exporter, C-terminal vm_RS04350 cdc7c2f9184ddd053cffd398fbbc61de 376 SUPERFAMILY SSF160544 250 355 2.88E-38 T 11-11-2016 IPR029025 Type III secretion system substrate exporter, C-terminal vm_RS04350 cdc7c2f9184ddd053cffd398fbbc61de 376 Pfam PF01312 FlhB HrpN YscU SpaS Family 7 347 6.6E-120 T 11-11-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 vm_RS17160 31310e922152966781561447a86c596f 246 Gene3D G3DSA:1.10.3720.10 4 225 3.7E-37 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS17160 31310e922152966781561447a86c596f 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 226 2.3E-10 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS17160 31310e922152966781561447a86c596f 246 SUPERFAMILY SSF161098 4 223 8.63E-43 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS14090 2678d999fe6e901d1aa04f5c664832ba 89 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 11-11-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 vm_RS14090 2678d999fe6e901d1aa04f5c664832ba 89 Gene3D G3DSA:3.10.20.30 3 86 3.9E-26 T 11-11-2016 IPR012675 Beta-grasp domain vm_RS14090 2678d999fe6e901d1aa04f5c664832ba 89 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 80 1.2E-15 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 vm_RS14090 2678d999fe6e901d1aa04f5c664832ba 89 SUPERFAMILY SSF54292 1 87 1.23E-26 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 vm_RS06885 337de03bdf16887f3796b5e4e4c99da5 364 Gene3D G3DSA:3.40.50.150 144 241 6.7E-7 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS06885 337de03bdf16887f3796b5e4e4c99da5 364 SUPERFAMILY SSF53335 87 353 2.17E-30 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS06885 337de03bdf16887f3796b5e4e4c99da5 364 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 48 355 54.873 T 11-11-2016 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 vm_RS06885 337de03bdf16887f3796b5e4e4c99da5 364 Pfam PF05971 Protein of unknown function (DUF890) 46 353 2.3E-147 T 11-11-2016 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 vm_RS06885 337de03bdf16887f3796b5e4e4c99da5 364 PIRSF PIRSF029038 37 364 2.2E-154 T 11-11-2016 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 vm_RS02035 e2fa128cc17694ea2a1ebda4dc76d4e2 117 SUPERFAMILY SSF53137 3 115 7.41E-51 T 11-11-2016 vm_RS02035 e2fa128cc17694ea2a1ebda4dc76d4e2 117 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 2 117 25.505 T 11-11-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS02035 e2fa128cc17694ea2a1ebda4dc76d4e2 117 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 1 117 9.8E-43 T 11-11-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02035 e2fa128cc17694ea2a1ebda4dc76d4e2 117 Gene3D G3DSA:3.30.420.100 24 117 5.3E-35 T 11-11-2016 vm_RS02035 e2fa128cc17694ea2a1ebda4dc76d4e2 117 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 3 117 1.3E-43 T 11-11-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS04850 8aab2c3950d799a52aa72e57a22268d7 316 SUPERFAMILY SSF53901 3 315 4.95E-71 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS04850 8aab2c3950d799a52aa72e57a22268d7 316 Gene3D G3DSA:3.40.47.10 161 315 2.8E-50 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS04850 8aab2c3950d799a52aa72e57a22268d7 316 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 106 183 2.7E-30 T 11-11-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 vm_RS04850 8aab2c3950d799a52aa72e57a22268d7 316 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 227 315 3.9E-34 T 11-11-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 vm_RS04850 8aab2c3950d799a52aa72e57a22268d7 316 Gene3D G3DSA:3.40.47.10 1 160 1.5E-67 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS04850 8aab2c3950d799a52aa72e57a22268d7 316 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 1 316 2.7E-145 T 11-11-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 vm_RS04850 8aab2c3950d799a52aa72e57a22268d7 316 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 1 316 72.37 T 11-11-2016 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 Pfam PF02910 Fumarate reductase flavoprotein C-term 460 588 2.0E-37 T 11-11-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 9 588 1.2E-240 T 11-11-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 7 588 7.7E-275 T 11-11-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 Gene3D G3DSA:1.20.58.100 446 555 5.7E-37 T 11-11-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 Gene3D G3DSA:4.10.80.40 556 588 4.5E-20 T 11-11-2016 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 Gene3D G3DSA:3.50.50.60 351 424 1.0E-116 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 Gene3D G3DSA:3.50.50.60 6 242 1.0E-116 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 SUPERFAMILY SSF56425 236 356 2.99E-42 T 11-11-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 11-11-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 SUPERFAMILY SSF51905 6 259 9.18E-72 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 SUPERFAMILY SSF51905 359 438 9.18E-72 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 SUPERFAMILY SSF46977 451 588 6.15E-47 T 11-11-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 Pfam PF00890 FAD binding domain 9 405 1.3E-118 T 11-11-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 PIRSF PIRSF000171 1 579 2.2E-47 T 11-11-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04495 c51004c0eaa13d94245b3c0733fefdd3 588 Gene3D G3DSA:3.90.700.10 243 349 7.0E-41 T 11-11-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS11650 b59010d4445b5312643e3670c228fa05 241 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 9 239 4.9E-80 T 11-11-2016 IPR017689 Outer membrane protein assembly factor BamD vm_RS11650 b59010d4445b5312643e3670c228fa05 241 Pfam PF13525 Outer membrane lipoprotein 26 234 2.1E-80 T 11-11-2016 vm_RS11650 b59010d4445b5312643e3670c228fa05 241 Gene3D G3DSA:1.25.40.10 31 170 8.6E-7 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS11650 b59010d4445b5312643e3670c228fa05 241 SUPERFAMILY SSF48452 25 119 8.86E-9 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS11650 b59010d4445b5312643e3670c228fa05 241 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 1 240 37.845 T 11-11-2016 IPR017689 Outer membrane protein assembly factor BamD vm_RS14035 481764250e58d332f7f4b64ccd676cc7 320 Gene3D G3DSA:2.30.30.100 271 319 7.3E-22 T 11-11-2016 vm_RS14035 481764250e58d332f7f4b64ccd676cc7 320 SUPERFAMILY SSF50037 271 317 2.2E-10 T 11-11-2016 IPR008988 Transcriptional repressor, C-terminal vm_RS14035 481764250e58d332f7f4b64ccd676cc7 320 Pfam PF03099 Biotin/lipoate A/B protein ligase family 85 207 3.9E-20 T 11-11-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 vm_RS14035 481764250e58d332f7f4b64ccd676cc7 320 Gene3D G3DSA:3.30.930.10 69 268 7.2E-62 T 11-11-2016 vm_RS14035 481764250e58d332f7f4b64ccd676cc7 320 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 7 317 33.824 T 11-11-2016 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 vm_RS14035 481764250e58d332f7f4b64ccd676cc7 320 SUPERFAMILY SSF55681 68 268 1.56E-61 T 11-11-2016 vm_RS14035 481764250e58d332f7f4b64ccd676cc7 320 TIGRFAM TIGR00122 birA_repr_reg: biotin operon repressor 8 75 2.0E-20 T 11-11-2016 IPR004409 Biotin operon repressor, helix-turn-helix domain GO:0006355 KEGG: 00780+6.3.4.15 vm_RS14035 481764250e58d332f7f4b64ccd676cc7 320 Pfam PF08279 HTH domain 8 59 6.9E-11 T 11-11-2016 IPR013196 Helix-turn-helix, type 11 vm_RS14035 481764250e58d332f7f4b64ccd676cc7 320 SUPERFAMILY SSF46785 6 60 7.49E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS14035 481764250e58d332f7f4b64ccd676cc7 320 Gene3D G3DSA:1.10.10.10 1 63 1.0E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS14035 481764250e58d332f7f4b64ccd676cc7 320 Pfam PF02237 Biotin protein ligase C terminal domain 271 317 3.1E-12 T 11-11-2016 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS14035 481764250e58d332f7f4b64ccd676cc7 320 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 80 317 8.2E-68 T 11-11-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS14155 d92ddcddc8a8ae8cc9135b4d898e37cb 149 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 6 145 6.2E-67 T 11-11-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 vm_RS14155 d92ddcddc8a8ae8cc9135b4d898e37cb 149 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 149 75.817 T 11-11-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 vm_RS14155 d92ddcddc8a8ae8cc9135b4d898e37cb 149 Gene3D G3DSA:3.40.50.9100 4 147 8.9E-70 T 11-11-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 vm_RS14155 d92ddcddc8a8ae8cc9135b4d898e37cb 149 PIRSF PIRSF001399 3 149 7.7E-61 T 11-11-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 vm_RS14155 d92ddcddc8a8ae8cc9135b4d898e37cb 149 ProSitePatterns PS01029 Dehydroquinase class II signature. 10 27 - T 11-11-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 vm_RS14155 d92ddcddc8a8ae8cc9135b4d898e37cb 149 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 21 143 2.0E-64 T 11-11-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 vm_RS14155 d92ddcddc8a8ae8cc9135b4d898e37cb 149 SUPERFAMILY SSF52304 4 145 7.98E-63 T 11-11-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 vm_RS14155 d92ddcddc8a8ae8cc9135b4d898e37cb 149 Pfam PF01220 Dehydroquinase class II 6 142 4.1E-61 T 11-11-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 vm_RS05975 25a0370dc05d39bcb57c0ecea7c1f73d 803 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 11 790 2.6E-151 T 11-11-2016 IPR005887 Alpha-1,2-mannosidase, putative vm_RS05975 25a0370dc05d39bcb57c0ecea7c1f73d 803 Gene3D G3DSA:1.20.1610.10 493 654 4.3E-43 T 11-11-2016 vm_RS05975 25a0370dc05d39bcb57c0ecea7c1f73d 803 Gene3D G3DSA:3.30.2080.10 655 795 8.1E-55 T 11-11-2016 vm_RS05975 25a0370dc05d39bcb57c0ecea7c1f73d 803 Gene3D G3DSA:1.20.1050.60 389 478 7.9E-25 T 11-11-2016 vm_RS05975 25a0370dc05d39bcb57c0ecea7c1f73d 803 SUPERFAMILY SSF48208 303 772 4.65E-20 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 vm_RS05975 25a0370dc05d39bcb57c0ecea7c1f73d 803 Pfam PF07971 Glycosyl hydrolase family 92 281 789 3.4E-132 T 11-11-2016 IPR012939 Glycosyl hydrolase family 92 vm_RS05975 25a0370dc05d39bcb57c0ecea7c1f73d 803 Gene3D G3DSA:2.70.98.10 38 363 8.0E-90 T 11-11-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 vm_RS14095 646724769d64b99767b2270f78c65761 613 SUPERFAMILY SSF143968 486 611 3.66E-30 T 11-11-2016 vm_RS14095 646724769d64b99767b2270f78c65761 613 Gene3D G3DSA:1.20.5.570 586 613 4.9E-16 T 11-11-2016 vm_RS14095 646724769d64b99767b2270f78c65761 613 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 485 569 1.9E-17 T 11-11-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 vm_RS14095 646724769d64b99767b2270f78c65761 613 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 11 431 3.6E-162 T 11-11-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 vm_RS14095 646724769d64b99767b2270f78c65761 613 Gene3D G3DSA:3.40.1670.10 487 585 2.2E-28 T 11-11-2016 vm_RS14095 646724769d64b99767b2270f78c65761 613 Gene3D G3DSA:3.40.1670.10 337 454 9.0E-49 T 11-11-2016 vm_RS14095 646724769d64b99767b2270f78c65761 613 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 455 1.4E-163 T 11-11-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978 vm_RS14095 646724769d64b99767b2270f78c65761 613 SUPERFAMILY SSF50475 3 322 3.88E-123 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 vm_RS14095 646724769d64b99767b2270f78c65761 613 SUPERFAMILY SSF143968 323 460 3.66E-51 T 11-11-2016 vm_RS01070 37ae2406b6734082a064e6a8074b42d3 461 SMART SM00487 1 179 1.2E-4 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS01070 37ae2406b6734082a064e6a8074b42d3 461 Gene3D G3DSA:3.40.50.300 5 163 1.9E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01070 37ae2406b6734082a064e6a8074b42d3 461 SUPERFAMILY SSF52540 18 160 1.8E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01070 37ae2406b6734082a064e6a8074b42d3 461 SUPERFAMILY SSF52540 223 359 1.8E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01070 37ae2406b6734082a064e6a8074b42d3 461 Pfam PF04851 Type III restriction enzyme, res subunit 5 157 9.3E-10 T 11-11-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 vm_RS01070 37ae2406b6734082a064e6a8074b42d3 461 Gene3D G3DSA:3.40.50.300 239 376 1.2E-6 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02830 aed7372c2ef2307fb47d08574256d488 761 Gene3D G3DSA:2.120.10.90 498 734 4.1E-29 T 11-11-2016 vm_RS02830 aed7372c2ef2307fb47d08574256d488 761 SMART SM00434 13 463 5.5E-231 T 11-11-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02830 aed7372c2ef2307fb47d08574256d488 761 SUPERFAMILY SSF101904 499 743 2.49E-52 T 11-11-2016 vm_RS02830 aed7372c2ef2307fb47d08574256d488 761 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 600 640 8.4E-4 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 vm_RS02830 aed7372c2ef2307fb47d08574256d488 761 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 647 691 9.4E-8 T 11-11-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 vm_RS02830 aed7372c2ef2307fb47d08574256d488 761 SUPERFAMILY SSF56719 33 485 7.98E-154 T 11-11-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 vm_RS02830 aed7372c2ef2307fb47d08574256d488 761 Gene3D G3DSA:3.90.199.10 32 239 4.7E-105 T 11-11-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 vm_RS02830 aed7372c2ef2307fb47d08574256d488 761 Gene3D G3DSA:3.90.199.10 335 399 4.7E-105 T 11-11-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 vm_RS02830 aed7372c2ef2307fb47d08574256d488 761 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 34 470 1.0E-134 T 11-11-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS02830 aed7372c2ef2307fb47d08574256d488 761 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 6 745 33.72 T 11-11-2016 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 vm_RS02830 aed7372c2ef2307fb47d08574256d488 761 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 10 744 0.0 T 11-11-2016 vm_RS02830 aed7372c2ef2307fb47d08574256d488 761 Gene3D G3DSA:3.30.1360.40 240 333 6.4E-25 T 11-11-2016 IPR024946 Arginine repressor C-terminal-like domain vm_RS02955 e1d16cf0076e38db16473817f5d2877b 453 Pfam PF08245 Mur ligase middle domain 105 293 2.0E-46 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02955 e1d16cf0076e38db16473817f5d2877b 453 SUPERFAMILY SSF53623 100 311 1.57E-54 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02955 e1d16cf0076e38db16473817f5d2877b 453 Pfam PF01225 Mur ligase family, catalytic domain 24 90 1.1E-7 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 vm_RS02955 e1d16cf0076e38db16473817f5d2877b 453 SUPERFAMILY SSF53244 314 448 1.03E-32 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02955 e1d16cf0076e38db16473817f5d2877b 453 Gene3D G3DSA:3.90.190.20 314 451 4.1E-38 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02955 e1d16cf0076e38db16473817f5d2877b 453 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 29 448 8.6E-146 T 11-11-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS02955 e1d16cf0076e38db16473817f5d2877b 453 SUPERFAMILY SSF63418 1 95 1.7E-24 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 vm_RS02955 e1d16cf0076e38db16473817f5d2877b 453 Gene3D G3DSA:3.40.1190.10 82 311 1.3E-72 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02955 e1d16cf0076e38db16473817f5d2877b 453 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 449 32.969 T 11-11-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS02955 e1d16cf0076e38db16473817f5d2877b 453 Pfam PF02875 Mur ligase family, glutamate ligase domain 314 393 2.1E-11 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02955 e1d16cf0076e38db16473817f5d2877b 453 Gene3D G3DSA:3.40.1390.10 1 80 1.8E-23 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 vm_RS04515 d5077cfc29b3ef315dab45a0bbb4140c 388 Pfam PF00549 CoA-ligase 262 382 2.0E-24 T 11-11-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 vm_RS04515 d5077cfc29b3ef315dab45a0bbb4140c 388 SUPERFAMILY SSF56059 1 238 1.6E-78 T 11-11-2016 vm_RS04515 d5077cfc29b3ef315dab45a0bbb4140c 388 Gene3D G3DSA:3.30.470.20 96 239 4.3E-57 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS04515 d5077cfc29b3ef315dab45a0bbb4140c 388 SUPERFAMILY SSF52210 240 385 2.49E-53 T 11-11-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 vm_RS04515 d5077cfc29b3ef315dab45a0bbb4140c 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 11-11-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 vm_RS04515 d5077cfc29b3ef315dab45a0bbb4140c 388 Gene3D G3DSA:3.30.1490.20 22 95 3.1E-31 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS04515 d5077cfc29b3ef315dab45a0bbb4140c 388 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 42.515 T 11-11-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 vm_RS04515 d5077cfc29b3ef315dab45a0bbb4140c 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 3.1E-172 T 11-11-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 vm_RS04515 d5077cfc29b3ef315dab45a0bbb4140c 388 Gene3D G3DSA:3.40.50.261 241 383 1.7E-66 T 11-11-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 vm_RS04515 d5077cfc29b3ef315dab45a0bbb4140c 388 Pfam PF08442 ATP-grasp domain 2 203 5.5E-79 T 11-11-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 vm_RS04515 d5077cfc29b3ef315dab45a0bbb4140c 388 PIRSF PIRSF001554 1 388 2.4E-154 T 11-11-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 vm_RS05100 44c6ab92928c9096051154e900b25fff 263 Pfam PF12697 Alpha/beta hydrolase family 18 252 2.1E-18 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 vm_RS05100 44c6ab92928c9096051154e900b25fff 263 SUPERFAMILY SSF53474 10 260 6.51E-45 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS05100 44c6ab92928c9096051154e900b25fff 263 Gene3D G3DSA:3.40.50.1820 13 261 1.7E-65 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS05100 44c6ab92928c9096051154e900b25fff 263 TIGRFAM TIGR03695 menH_SHCHC: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 15 259 2.9E-84 T 11-11-2016 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 vm_RS05100 44c6ab92928c9096051154e900b25fff 263 Hamap MF_01660 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [menH]. 8 259 34.129 T 11-11-2016 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase GO:0009234|GO:0070205 KEGG: 00130+4.2.99.20|MetaCyc: PWY-5837 vm_RS01720 1725de16f9181bb070ea94bef10fdb71 333 SMART SM00859 3 146 3.3E-46 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 vm_RS01720 1725de16f9181bb070ea94bef10fdb71 333 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 145 6.2E-32 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 vm_RS01720 1725de16f9181bb070ea94bef10fdb71 333 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 164 310 5.1E-13 T 11-11-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 vm_RS01720 1725de16f9181bb070ea94bef10fdb71 333 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 332 5.6E-119 T 11-11-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 vm_RS01720 1725de16f9181bb070ea94bef10fdb71 333 SUPERFAMILY SSF51735 1 170 2.61E-41 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS01720 1725de16f9181bb070ea94bef10fdb71 333 Gene3D G3DSA:3.40.50.720 1 162 7.5E-56 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS01720 1725de16f9181bb070ea94bef10fdb71 333 Gene3D G3DSA:3.30.360.10 163 307 1.9E-48 T 11-11-2016 vm_RS01720 1725de16f9181bb070ea94bef10fdb71 333 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 149 165 - T 11-11-2016 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 vm_RS01720 1725de16f9181bb070ea94bef10fdb71 333 SUPERFAMILY SSF55347 154 307 1.96E-48 T 11-11-2016 vm_RS01720 1725de16f9181bb070ea94bef10fdb71 333 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 333 36.76 T 11-11-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 vm_RS03875 53cd75e211507ec800cf54ac5424a078 138 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 11-11-2016 IPR019776 Flagellar basal body rod protein, conserved site vm_RS03875 53cd75e211507ec800cf54ac5424a078 138 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 92 136 4.3E-12 T 11-11-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain vm_RS03875 53cd75e211507ec800cf54ac5424a078 138 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 4 138 7.3E-52 T 11-11-2016 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 vm_RS03875 53cd75e211507ec800cf54ac5424a078 138 Pfam PF00460 Flagella basal body rod protein 7 32 2.5E-7 T 11-11-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 vm_RS02245 0c251d68deae7971afb3294059ad93a0 531 Gene3D G3DSA:1.10.3720.10 38 259 1.9E-35 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS02245 0c251d68deae7971afb3294059ad93a0 531 Gene3D G3DSA:1.10.3720.10 283 524 7.3E-29 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS02245 0c251d68deae7971afb3294059ad93a0 531 SUPERFAMILY SSF161098 277 522 2.06E-32 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS02245 0c251d68deae7971afb3294059ad93a0 531 TIGRFAM TIGR01253 thiP: thiamine/thiamine pyrophosphate ABC transporter, permease protein 11 517 4.6E-165 T 11-11-2016 IPR005947 Thiamine ABC transporter, permease protein GO:0005215|GO:0015888|GO:0016021 vm_RS02245 0c251d68deae7971afb3294059ad93a0 531 SUPERFAMILY SSF161098 11 256 2.24E-41 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS02245 0c251d68deae7971afb3294059ad93a0 531 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 360 516 1.3E-7 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS02245 0c251d68deae7971afb3294059ad93a0 531 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 64 259 1.5E-9 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS00890 03df2c4f79a688107f41f1a6cd4e31d3 503 SMART SM00382 256 379 5.8E-5 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS00890 03df2c4f79a688107f41f1a6cd4e31d3 503 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 323 337 - T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 vm_RS00890 03df2c4f79a688107f41f1a6cd4e31d3 503 Gene3D G3DSA:3.30.450.90 95 228 2.3E-55 T 11-11-2016 vm_RS00890 03df2c4f79a688107f41f1a6cd4e31d3 503 SUPERFAMILY SSF160246 15 81 1.7E-15 T 11-11-2016 vm_RS00890 03df2c4f79a688107f41f1a6cd4e31d3 503 Gene3D G3DSA:3.40.50.300 231 501 9.8E-102 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00890 03df2c4f79a688107f41f1a6cd4e31d3 503 SUPERFAMILY SSF52540 110 500 9.81E-107 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00890 03df2c4f79a688107f41f1a6cd4e31d3 503 Pfam PF00437 Type II/IV secretion system protein 130 395 4.8E-87 T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 vm_RS00890 03df2c4f79a688107f41f1a6cd4e31d3 503 TIGRFAM TIGR02533 type_II_gspE: type II secretion system protein E 14 500 2.4E-235 T 11-11-2016 IPR013369 Type II secretion system GspE GO:0005524|GO:0008565|GO:0015627|GO:0015628 vm_RS06390 f8e6be227f38c8f0059fe578e8031fa9 789 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 23 686 47.617 T 11-11-2016 IPR022946 Uncharacterised protein family UPF0313 vm_RS06390 f8e6be227f38c8f0059fe578e8031fa9 789 SMART SM00729 367 617 4.1E-4 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 vm_RS06390 f8e6be227f38c8f0059fe578e8031fa9 789 SUPERFAMILY SSF102114 369 431 1.31E-9 T 11-11-2016 vm_RS06390 f8e6be227f38c8f0059fe578e8031fa9 789 SUPERFAMILY SSF102114 461 605 1.31E-9 T 11-11-2016 vm_RS06390 f8e6be227f38c8f0059fe578e8031fa9 789 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 24 636 1.5E-258 T 11-11-2016 IPR022946 Uncharacterised protein family UPF0313 vm_RS06390 f8e6be227f38c8f0059fe578e8031fa9 789 Pfam PF08497 Radical SAM N-terminal 24 370 1.7E-141 T 11-11-2016 IPR013704 Uncharacterised protein family UPF0313, N-terminal vm_RS06390 f8e6be227f38c8f0059fe578e8031fa9 789 Gene3D G3DSA:3.80.30.20 365 606 2.7E-46 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe vm_RS06390 f8e6be227f38c8f0059fe578e8031fa9 789 Pfam PF04055 Radical SAM superfamily 371 576 5.3E-21 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS06390 f8e6be227f38c8f0059fe578e8031fa9 789 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 371 391 - T 11-11-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 vm_RS06390 f8e6be227f38c8f0059fe578e8031fa9 789 Pfam PF11842 Domain of unknown function (DUF3362) 585 725 2.5E-40 T 11-11-2016 IPR024560 Uncharacterised protein family UPF0313, C-terminal vm_RS13050 867f3f37f6bc068623e7a852ab325956 345 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 vm_RS13050 867f3f37f6bc068623e7a852ab325956 345 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 333 4.6E-151 T 11-11-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 vm_RS13050 867f3f37f6bc068623e7a852ab325956 345 SUPERFAMILY SSF52540 5 335 5.98E-76 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13050 867f3f37f6bc068623e7a852ab325956 345 Gene3D G3DSA:3.40.50.300 100 338 5.3E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13050 867f3f37f6bc068623e7a852ab325956 345 Pfam PF00437 Type II/IV secretion system protein 12 270 1.2E-45 T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 vm_RS08050 945495d42324d9774b6a5cea6a9287c5 109 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 2 109 2.2E-49 T 11-11-2016 IPR007453 Sulphur transfer protein DsrC/TusE vm_RS08050 945495d42324d9774b6a5cea6a9287c5 109 Gene3D G3DSA:1.10.10.370 40 109 2.4E-36 T 11-11-2016 vm_RS08050 945495d42324d9774b6a5cea6a9287c5 109 SUPERFAMILY SSF69721 2 109 2.88E-41 T 11-11-2016 IPR025526 DsrC-like domain vm_RS08050 945495d42324d9774b6a5cea6a9287c5 109 PIRSF PIRSF006223 2 109 9.7E-42 T 11-11-2016 IPR007453 Sulphur transfer protein DsrC/TusE vm_RS08050 945495d42324d9774b6a5cea6a9287c5 109 Pfam PF04358 DsrC like protein 4 109 2.3E-44 T 11-11-2016 IPR007453 Sulphur transfer protein DsrC/TusE vm_RS08050 945495d42324d9774b6a5cea6a9287c5 109 Gene3D G3DSA:3.30.1420.10 1 39 2.7E-14 T 11-11-2016 vm_RS08805 daed1644694887074bd12906edb0fb1c 255 SUPERFAMILY SSF81301 36 104 5.09E-8 T 11-11-2016 vm_RS08805 daed1644694887074bd12906edb0fb1c 255 Pfam PF01909 Nucleotidyltransferase domain 37 81 7.5E-5 T 11-11-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 vm_RS08805 daed1644694887074bd12906edb0fb1c 255 Gene3D G3DSA:3.30.460.10 35 124 3.2E-11 T 11-11-2016 vm_RS12340 d787957b30e01585f033c925519fcfba 353 Pfam PF13365 Trypsin-like peptidase domain 81 215 1.6E-32 T 11-11-2016 vm_RS12340 d787957b30e01585f033c925519fcfba 353 Gene3D G3DSA:2.30.42.10 258 351 5.6E-22 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS12340 d787957b30e01585f033c925519fcfba 353 SMART SM00228 256 338 5.5E-7 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS12340 d787957b30e01585f033c925519fcfba 353 PRINTS PR00834 HtrA/DegQ protease family signature 296 308 1.7E-45 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 vm_RS12340 d787957b30e01585f033c925519fcfba 353 PRINTS PR00834 HtrA/DegQ protease family signature 90 102 1.7E-45 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 vm_RS12340 d787957b30e01585f033c925519fcfba 353 PRINTS PR00834 HtrA/DegQ protease family signature 111 131 1.7E-45 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 vm_RS12340 d787957b30e01585f033c925519fcfba 353 PRINTS PR00834 HtrA/DegQ protease family signature 186 203 1.7E-45 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 vm_RS12340 d787957b30e01585f033c925519fcfba 353 PRINTS PR00834 HtrA/DegQ protease family signature 151 175 1.7E-45 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 vm_RS12340 d787957b30e01585f033c925519fcfba 353 PRINTS PR00834 HtrA/DegQ protease family signature 208 225 1.7E-45 T 11-11-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 vm_RS12340 d787957b30e01585f033c925519fcfba 353 SUPERFAMILY SSF50156 239 346 6.49E-19 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS12340 d787957b30e01585f033c925519fcfba 353 Pfam PF13180 PDZ domain 256 346 1.8E-14 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS12340 d787957b30e01585f033c925519fcfba 353 TIGRFAM TIGR02038 protease_degS: periplasmic serine peptidase DegS 2 351 2.7E-180 T 11-11-2016 IPR011783 Peptidase S1C, DegS GO:0004252|GO:0006508 vm_RS12340 d787957b30e01585f033c925519fcfba 353 SUPERFAMILY SSF50494 44 253 6.59E-61 T 11-11-2016 IPR009003 Peptidase S1, PA clan vm_RS12340 d787957b30e01585f033c925519fcfba 353 Gene3D G3DSA:2.40.10.10 147 257 1.5E-38 T 11-11-2016 vm_RS12340 d787957b30e01585f033c925519fcfba 353 Gene3D G3DSA:2.40.10.10 36 140 2.0E-33 T 11-11-2016 vm_RS00360 4fa7251900fec079e5acabcc930479db 141 Gene3D G3DSA:3.40.50.620 3 139 2.6E-30 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS00360 4fa7251900fec079e5acabcc930479db 141 PIRSF PIRSF006276 1 141 1.2E-52 T 11-11-2016 IPR006015 Universal stress protein A vm_RS00360 4fa7251900fec079e5acabcc930479db 141 Pfam PF00582 Universal stress protein family 3 138 2.0E-21 T 11-11-2016 IPR006016 UspA GO:0006950 vm_RS00360 4fa7251900fec079e5acabcc930479db 141 SUPERFAMILY SSF52402 3 139 2.01E-32 T 11-11-2016 vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 PRINTS PR00958 Homoserine kinase signature 181 198 1.6E-31 T 11-11-2016 vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 PRINTS PR00958 Homoserine kinase signature 260 275 1.6E-31 T 11-11-2016 vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 PRINTS PR00958 Homoserine kinase signature 143 156 1.6E-31 T 11-11-2016 vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 PRINTS PR00958 Homoserine kinase signature 103 118 1.6E-31 T 11-11-2016 vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 PRINTS PR00958 Homoserine kinase signature 10 25 1.6E-31 T 11-11-2016 vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 SUPERFAMILY SSF54211 3 191 5.54E-33 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 96 107 - T 11-11-2016 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 TIGRFAM TIGR00191 thrB: homoserine kinase 3 314 7.6E-108 T 11-11-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 SUPERFAMILY SSF55060 178 294 3.96E-31 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 PIRSF PIRSF000676 1 316 4.9E-80 T 11-11-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 Gene3D G3DSA:3.30.70.890 174 304 3.8E-40 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 Pfam PF00288 GHMP kinases N terminal domain 90 156 5.2E-13 T 11-11-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 Hamap MF_00384 Homoserine kinase [thrB]. 3 313 29.838 T 11-11-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 Pfam PF08544 GHMP kinases C terminal 223 291 7.4E-8 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain vm_RS03130 4b312cf73fe92dd08b7f97fb6e891bef 318 Gene3D G3DSA:3.30.230.10 2 165 1.2E-45 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS06130 5b37f6e957cf1473bf4b97d488ae8560 250 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 7 226 1.0E-72 T 11-11-2016 IPR017592 Pilus assembly, Flp-type CpaB vm_RS06130 5b37f6e957cf1473bf4b97d488ae8560 250 SMART SM00858 44 106 8.3E-6 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 vm_RS06130 5b37f6e957cf1473bf4b97d488ae8560 250 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 113 215 5.4E-29 T 11-11-2016 IPR031571 Flp pilus assembly protein RcpC/CpaB domain vm_RS06130 5b37f6e957cf1473bf4b97d488ae8560 250 Pfam PF08666 SAF domain 45 105 1.1E-7 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 vm_RS08865 5825787d7bb257368d41385d93430aab 1011 Gene3D G3DSA:1.10.1060.10 511 614 3.6E-14 T 11-11-2016 vm_RS08865 5825787d7bb257368d41385d93430aab 1011 Gene3D G3DSA:1.10.1060.10 649 690 3.6E-14 T 11-11-2016 vm_RS08865 5825787d7bb257368d41385d93430aab 1011 Gene3D G3DSA:3.30.465.10 110 277 5.6E-42 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 vm_RS08865 5825787d7bb257368d41385d93430aab 1011 Pfam PF13183 4Fe-4S dicluster domain 570 681 3.9E-12 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain vm_RS08865 5825787d7bb257368d41385d93430aab 1011 SUPERFAMILY SSF56176 20 192 2.4E-52 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 vm_RS08865 5825787d7bb257368d41385d93430aab 1011 SUPERFAMILY SSF56176 235 277 2.4E-52 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 vm_RS08865 5825787d7bb257368d41385d93430aab 1011 SUPERFAMILY SSF46548 647 685 6.28E-7 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 vm_RS08865 5825787d7bb257368d41385d93430aab 1011 SUPERFAMILY SSF46548 571 617 6.28E-7 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 vm_RS08865 5825787d7bb257368d41385d93430aab 1011 Pfam PF02913 FAD linked oxidases, C-terminal domain 276 534 1.8E-64 T 11-11-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 vm_RS08865 5825787d7bb257368d41385d93430aab 1011 Gene3D G3DSA:3.30.43.10 3 109 7.8E-27 T 11-11-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 vm_RS08865 5825787d7bb257368d41385d93430aab 1011 SUPERFAMILY SSF55103 252 538 5.23E-52 T 11-11-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 vm_RS08865 5825787d7bb257368d41385d93430aab 1011 Pfam PF01565 FAD binding domain 52 191 1.1E-36 T 11-11-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 vm_RS08865 5825787d7bb257368d41385d93430aab 1011 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 667 678 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 SUPERFAMILY SSF46977 444 581 4.32E-43 T 11-11-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 TIGRFAM TIGR01176 fum_red_Fp: fumarate reductase (quinol), flavoprotein subunit 3 582 0.0 T 11-11-2016 IPR005884 Fumarate reductase, flavoprotein subunit GO:0009061|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.4|KEGG: 00620+1.3.5.4|KEGG: 00650+1.3.5.4|KEGG: 00720+1.3.5.4|MetaCyc: PWY-5392|MetaCyc: PWY-5913|MetaCyc: PWY-7384 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.8E-9 T 11-11-2016 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 360 382 5.8E-9 T 11-11-2016 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 Pfam PF02910 Fumarate reductase flavoprotein C-term 453 581 1.5E-37 T 11-11-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 SUPERFAMILY SSF51905 3 250 8.9E-72 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 SUPERFAMILY SSF51905 361 427 8.9E-72 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 Gene3D G3DSA:4.10.80.40 543 577 1.4E-16 T 11-11-2016 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 8.4E-5 T 11-11-2016 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 375 382 8.4E-5 T 11-11-2016 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 Gene3D G3DSA:1.20.58.100 426 537 6.3E-37 T 11-11-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 PIRSF PIRSF000171 1 571 3.3E-44 T 11-11-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 43 52 - T 11-11-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 Gene3D G3DSA:3.50.50.60 353 417 4.1E-106 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 Gene3D G3DSA:3.50.50.60 4 233 4.1E-106 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 Gene3D G3DSA:3.90.700.10 234 351 4.8E-35 T 11-11-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 Pfam PF00890 FAD binding domain 7 397 1.2E-112 T 11-11-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 SUPERFAMILY SSF56425 227 358 3.74E-41 T 11-11-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS01675 d58d8a3aeb139dc14adb04324f94be84 602 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 7 581 7.3E-236 T 11-11-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04360 946e9f8ad1c7827de165a51b386ed6a6 310 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 6 300 53.5 T 11-11-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 vm_RS04360 946e9f8ad1c7827de165a51b386ed6a6 310 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 15 299 5.7E-97 T 11-11-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 vm_RS04360 946e9f8ad1c7827de165a51b386ed6a6 310 Gene3D G3DSA:3.40.50.150 108 289 2.4E-53 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS04360 946e9f8ad1c7827de165a51b386ed6a6 310 PIRSF PIRSF037167 2 307 6.8E-149 T 11-11-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 vm_RS04360 946e9f8ad1c7827de165a51b386ed6a6 310 Pfam PF05175 Methyltransferase small domain 134 217 2.9E-18 T 11-11-2016 IPR007848 Methyltransferase small domain GO:0008168 vm_RS04360 946e9f8ad1c7827de165a51b386ed6a6 310 SUPERFAMILY SSF53335 16 293 7.32E-50 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS04360 946e9f8ad1c7827de165a51b386ed6a6 310 Gene3D G3DSA:1.10.8.10 16 106 1.8E-6 T 11-11-2016 vm_RS04360 946e9f8ad1c7827de165a51b386ed6a6 310 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 13 295 3.3E-137 T 11-11-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 vm_RS04360 946e9f8ad1c7827de165a51b386ed6a6 310 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 204 210 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 vm_RS03850 66cb26ffc3e3426f23a54c68e10db96c 107 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 4 102 2.3E-24 T 11-11-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 vm_RS03850 66cb26ffc3e3426f23a54c68e10db96c 107 SUPERFAMILY SSF101498 3 101 2.62E-20 T 11-11-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 vm_RS03850 66cb26ffc3e3426f23a54c68e10db96c 107 Pfam PF04316 Anti-sigma-28 factor, FlgM 45 98 1.5E-17 T 11-11-2016 IPR031316 Anti-sigma-28 factor FlgM, C-terminal vm_RS11570 91744bffa0be1f7278ffc752feca8833 304 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 301 38.084 T 11-11-2016 IPR007476 Putative exonuclease, RdgC GO:0006310 vm_RS11570 91744bffa0be1f7278ffc752feca8833 304 Pfam PF04381 Putative exonuclease, RdgC 1 298 1.7E-123 T 11-11-2016 IPR007476 Putative exonuclease, RdgC GO:0006310 vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 Pfam PF00512 His Kinase A (phospho-acceptor) domain 229 280 4.4E-10 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 SUPERFAMILY SSF47384 220 281 3.73E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 326 433 3.2E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 Pfam PF00672 HAMP domain 157 221 2.1E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 SMART SM00304 173 225 2.7E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 380 390 5.9E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 362 376 5.9E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 413 5.9E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 SMART SM00387 325 435 6.5E-30 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 Gene3D G3DSA:1.10.287.130 217 280 7.5E-19 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 Gene3D G3DSA:3.30.565.10 289 436 9.8E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 SUPERFAMILY SSF55874 289 434 3.67E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS01140 57a84d3298d7d1a513551f5af54fab43 438 SMART SM00388 226 286 2.4E-10 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS07150 0f4e96c5819443c54bc132715f884d38 478 Gene3D G3DSA:3.20.20.80 5 476 1.6E-155 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS07150 0f4e96c5819443c54bc132715f884d38 478 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 10 24 - T 11-11-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site vm_RS07150 0f4e96c5819443c54bc132715f884d38 478 Pfam PF00232 Glycosyl hydrolase family 1 4 475 7.2E-138 T 11-11-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 vm_RS07150 0f4e96c5819443c54bc132715f884d38 478 SUPERFAMILY SSF51445 2 471 5.88E-166 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS07150 0f4e96c5819443c54bc132715f884d38 478 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 372 380 - T 11-11-2016 IPR018120 Glycoside hydrolase family 1, active site vm_RS07150 0f4e96c5819443c54bc132715f884d38 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 440 452 1.5E-15 T 11-11-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 vm_RS07150 0f4e96c5819443c54bc132715f884d38 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 372 380 1.5E-15 T 11-11-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 vm_RS07150 0f4e96c5819443c54bc132715f884d38 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 415 432 1.5E-15 T 11-11-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 vm_RS07150 0f4e96c5819443c54bc132715f884d38 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 306 320 1.5E-15 T 11-11-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 vm_RS07150 0f4e96c5819443c54bc132715f884d38 478 PRINTS PR00131 Glycosyl hydrolase family 1 signature 393 404 1.5E-15 T 11-11-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 vm_RS08660 837a916ec6b23b9bc10d7b44540d370a 202 SMART SM00855 3 151 1.2E-8 T 11-11-2016 IPR013078 Histidine phosphatase superfamily, clade-1 vm_RS08660 837a916ec6b23b9bc10d7b44540d370a 202 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 190 2.0E-30 T 11-11-2016 IPR013078 Histidine phosphatase superfamily, clade-1 vm_RS08660 837a916ec6b23b9bc10d7b44540d370a 202 SUPERFAMILY SSF53254 1 195 3.21E-33 T 11-11-2016 IPR029033 Histidine phosphatase superfamily vm_RS08660 837a916ec6b23b9bc10d7b44540d370a 202 Gene3D G3DSA:3.40.50.1240 1 190 5.1E-32 T 11-11-2016 IPR029033 Histidine phosphatase superfamily vm_RS01470 590a1a422ee154636303b986ea5acf89 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 203 8.3E-20 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS01470 590a1a422ee154636303b986ea5acf89 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 3.6E-11 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS01470 590a1a422ee154636303b986ea5acf89 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 3.6E-11 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS01470 590a1a422ee154636303b986ea5acf89 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 3.6E-11 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS01470 590a1a422ee154636303b986ea5acf89 209 SMART SM00421 147 204 6.2E-23 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS01470 590a1a422ee154636303b986ea5acf89 209 Gene3D G3DSA:3.40.50.2300 4 130 4.8E-28 T 11-11-2016 vm_RS01470 590a1a422ee154636303b986ea5acf89 209 Pfam PF00072 Response regulator receiver domain 7 120 4.0E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS01470 590a1a422ee154636303b986ea5acf89 209 Gene3D G3DSA:1.10.10.10 144 206 1.4E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS01470 590a1a422ee154636303b986ea5acf89 209 SUPERFAMILY SSF52172 4 130 4.41E-25 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS01470 590a1a422ee154636303b986ea5acf89 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS01470 590a1a422ee154636303b986ea5acf89 209 SMART SM00448 5 119 7.1E-20 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS01470 590a1a422ee154636303b986ea5acf89 209 SUPERFAMILY SSF46894 140 206 7.48E-20 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS07155 1129ff517477899911853a4b9abc2062 335 Pfam PF13377 Periplasmic binding protein-like domain 170 330 6.8E-36 T 11-11-2016 vm_RS07155 1129ff517477899911853a4b9abc2062 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 8.9E-21 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS07155 1129ff517477899911853a4b9abc2062 335 Gene3D G3DSA:3.40.50.2300 168 330 1.6E-51 T 11-11-2016 vm_RS07155 1129ff517477899911853a4b9abc2062 335 SUPERFAMILY SSF53822 61 331 9.3E-74 T 11-11-2016 IPR028082 Periplasmic binding protein-like I vm_RS07155 1129ff517477899911853a4b9abc2062 335 Gene3D G3DSA:3.40.50.2300 58 167 3.6E-41 T 11-11-2016 vm_RS07155 1129ff517477899911853a4b9abc2062 335 SUPERFAMILY SSF47413 1 60 5.34E-18 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS07155 1129ff517477899911853a4b9abc2062 335 SMART SM00354 1 71 4.1E-35 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS07155 1129ff517477899911853a4b9abc2062 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 8.2E-6 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS07155 1129ff517477899911853a4b9abc2062 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 8.2E-6 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS07155 1129ff517477899911853a4b9abc2062 335 Gene3D G3DSA:1.10.260.40 2 57 2.7E-26 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS11425 63637309e2c84f2ad4ec526a85ebff1b 107 SUPERFAMILY SSF89360 1 96 6.67E-33 T 11-11-2016 IPR000361 FeS cluster biogenesis vm_RS11425 63637309e2c84f2ad4ec526a85ebff1b 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 8.1E-25 T 11-11-2016 IPR000361 FeS cluster biogenesis vm_RS11425 63637309e2c84f2ad4ec526a85ebff1b 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 4.2E-57 T 11-11-2016 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0016226|GO:0051536 vm_RS11425 63637309e2c84f2ad4ec526a85ebff1b 107 Gene3D G3DSA:2.60.300.12 2 97 5.9E-35 T 11-11-2016 IPR000361 FeS cluster biogenesis vm_RS11425 63637309e2c84f2ad4ec526a85ebff1b 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 2.3E-37 T 11-11-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 vm_RS11425 63637309e2c84f2ad4ec526a85ebff1b 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 11-11-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site vm_RS07735 47b4352dd04fa271ebbd4bc40ebd1941 483 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 29 474 1.1E-214 T 11-11-2016 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 vm_RS07735 47b4352dd04fa271ebbd4bc40ebd1941 483 Pfam PF00171 Aldehyde dehydrogenase family 19 475 7.1E-175 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 vm_RS07735 47b4352dd04fa271ebbd4bc40ebd1941 483 Gene3D G3DSA:3.40.605.10 10 266 2.3E-103 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 vm_RS07735 47b4352dd04fa271ebbd4bc40ebd1941 483 SUPERFAMILY SSF53720 6 478 1.31E-175 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 vm_RS07735 47b4352dd04fa271ebbd4bc40ebd1941 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 253 260 - T 11-11-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 vm_RS07735 47b4352dd04fa271ebbd4bc40ebd1941 483 Gene3D G3DSA:3.40.309.10 267 451 1.9E-72 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 vm_RS07735 47b4352dd04fa271ebbd4bc40ebd1941 483 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 281 292 - T 11-11-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 vm_RS08395 5d4e088ac8f0ba8478dc26caaa5e32e2 252 SUPERFAMILY SSF88713 1 243 5.34E-70 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 vm_RS08395 5d4e088ac8f0ba8478dc26caaa5e32e2 252 Gene3D G3DSA:3.20.20.370 1 242 9.1E-76 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 vm_RS08395 5d4e088ac8f0ba8478dc26caaa5e32e2 252 Pfam PF04794 YdjC-like protein 2 231 4.1E-54 T 11-11-2016 IPR006879 Chitooligosaccharide deacetylase ChbG-like vm_RS08395 5d4e088ac8f0ba8478dc26caaa5e32e2 252 Hamap MF_01246 Chitooligosaccharide deacetylase [chbG]. 1 240 38.828 T 11-11-2016 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria GO:0000272|GO:0016811 vm_RS14150 2a0d68e9ffc470c59ef2dc73f5d786b4 649 Gene3D G3DSA:3.30.300.30 518 638 6.2E-28 T 11-11-2016 vm_RS14150 2a0d68e9ffc470c59ef2dc73f5d786b4 649 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 6.8E-23 T 11-11-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 vm_RS14150 2a0d68e9ffc470c59ef2dc73f5d786b4 649 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 52.785 T 11-11-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: R-HSA-71384 vm_RS14150 2a0d68e9ffc470c59ef2dc73f5d786b4 649 SUPERFAMILY SSF56801 8 644 1.83E-185 T 11-11-2016 vm_RS14150 2a0d68e9ffc470c59ef2dc73f5d786b4 649 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 11-11-2016 IPR020845 AMP-binding, conserved site vm_RS14150 2a0d68e9ffc470c59ef2dc73f5d786b4 649 Pfam PF00501 AMP-binding enzyme 84 522 1.1E-92 T 11-11-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 vm_RS14150 2a0d68e9ffc470c59ef2dc73f5d786b4 649 Gene3D G3DSA:3.40.50.980 80 266 2.4E-46 T 11-11-2016 vm_RS14150 2a0d68e9ffc470c59ef2dc73f5d786b4 649 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 643 0.0 T 11-11-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: R-HSA-71384 vm_RS14150 2a0d68e9ffc470c59ef2dc73f5d786b4 649 Gene3D G3DSA:3.40.50.980 267 424 2.3E-25 T 11-11-2016 vm_RS14150 2a0d68e9ffc470c59ef2dc73f5d786b4 649 Gene3D G3DSA:2.30.38.10 439 515 8.9E-9 T 11-11-2016 vm_RS14150 2a0d68e9ffc470c59ef2dc73f5d786b4 649 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 1.6E-24 T 11-11-2016 IPR025110 AMP-binding enzyme C-terminal domain vm_RS01495 6bd973c4541cd64d0edffcb599c2b5c1 158 Pfam PF00588 SpoU rRNA Methylase family 3 145 1.3E-34 T 11-11-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 vm_RS01495 6bd973c4541cd64d0edffcb599c2b5c1 158 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 156 2.5E-58 T 11-11-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 vm_RS01495 6bd973c4541cd64d0edffcb599c2b5c1 158 SUPERFAMILY SSF75217 2 156 9.81E-44 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases vm_RS01495 6bd973c4541cd64d0edffcb599c2b5c1 158 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 155 32.869 T 11-11-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 vm_RS01495 6bd973c4541cd64d0edffcb599c2b5c1 158 Gene3D G3DSA:3.40.1280.10 1 157 2.3E-65 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal vm_RS01495 6bd973c4541cd64d0edffcb599c2b5c1 158 PIRSF PIRSF029256 1 158 1.3E-66 T 11-11-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 vm_RS01915 fe9636a6751392685c318ab8ab55c27d 200 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 3 136 2.7E-11 T 11-11-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 vm_RS01915 fe9636a6751392685c318ab8ab55c27d 200 Gene3D G3DSA:3.10.50.40 2 80 1.1E-18 T 11-11-2016 vm_RS01915 fe9636a6751392685c318ab8ab55c27d 200 Gene3D G3DSA:3.10.50.40 126 140 1.1E-18 T 11-11-2016 vm_RS01915 fe9636a6751392685c318ab8ab55c27d 200 SUPERFAMILY SSF54534 2 140 1.91E-35 T 11-11-2016 vm_RS08055 7726a6add32723dc7c6edceefdc9a2cf 91 Gene3D G3DSA:3.30.70.100 7 90 2.9E-27 T 11-11-2016 vm_RS08055 7726a6add32723dc7c6edceefdc9a2cf 91 SUPERFAMILY SSF54975 3 90 1.26E-25 T 11-11-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 vm_RS08055 7726a6add32723dc7c6edceefdc9a2cf 91 ProSitePatterns PS00151 Acylphosphatase signature 2. 34 50 - T 11-11-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 vm_RS08055 7726a6add32723dc7c6edceefdc9a2cf 91 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 11-11-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 vm_RS08055 7726a6add32723dc7c6edceefdc9a2cf 91 Pfam PF00708 Acylphosphatase 5 90 7.4E-23 T 11-11-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 Pfam PF01238 Phosphomannose isomerase type I 17 378 2.2E-86 T 11-11-2016 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 16 397 1.6E-90 T 11-11-2016 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 Gene3D G3DSA:2.60.120.10 22 154 1.3E-66 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 Gene3D G3DSA:2.60.120.10 254 289 1.3E-66 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 PIRSF PIRSF001480 14 406 2.7E-103 T 11-11-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 Gene3D G3DSA:1.10.441.10 155 247 6.4E-32 T 11-11-2016 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 Gene3D G3DSA:1.10.441.10 290 315 6.4E-32 T 11-11-2016 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 SUPERFAMILY SSF51182 15 390 1.69E-100 T 11-11-2016 IPR011051 RmlC-like cupin domain vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 140 148 - T 11-11-2016 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 PRINTS PR00714 Phosphomannose isomerase type I signature 47 62 1.9E-69 T 11-11-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 PRINTS PR00714 Phosphomannose isomerase type I signature 140 163 1.9E-69 T 11-11-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 PRINTS PR00714 Phosphomannose isomerase type I signature 236 251 1.9E-69 T 11-11-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 PRINTS PR00714 Phosphomannose isomerase type I signature 271 290 1.9E-69 T 11-11-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 PRINTS PR00714 Phosphomannose isomerase type I signature 95 116 1.9E-69 T 11-11-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 PRINTS PR00714 Phosphomannose isomerase type I signature 290 309 1.9E-69 T 11-11-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 PRINTS PR00714 Phosphomannose isomerase type I signature 252 271 1.9E-69 T 11-11-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 PRINTS PR00714 Phosphomannose isomerase type I signature 19 37 1.9E-69 T 11-11-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS05920 040cca28ed00ae3f36d1dba3615c4c74 406 ProSitePatterns PS00966 Phosphomannose isomerase type I signature 2. 271 296 - T 11-11-2016 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|Reactome: R-HSA-4043916|Reactome: R-HSA-446205 vm_RS10310 3f09f9a3eb3d7f2ad321799343d60668 169 Gene3D G3DSA:2.70.70.10 17 166 2.5E-59 T 11-11-2016 vm_RS10310 3f09f9a3eb3d7f2ad321799343d60668 169 SUPERFAMILY SSF51261 17 166 7.85E-55 T 11-11-2016 IPR011055 Duplicated hybrid motif vm_RS10310 3f09f9a3eb3d7f2ad321799343d60668 169 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 22 146 1.0E-48 T 11-11-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 vm_RS10310 3f09f9a3eb3d7f2ad321799343d60668 169 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 85 97 - T 11-11-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 vm_RS10310 3f09f9a3eb3d7f2ad321799343d60668 169 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 23 143 7.7E-50 T 11-11-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 vm_RS04700 b2fe5e3177b2f0b5c38fd8304f5c1d14 223 SUPERFAMILY SSF51735 1 187 1.25E-27 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04700 b2fe5e3177b2f0b5c38fd8304f5c1d14 223 Pfam PF00106 short chain dehydrogenase 7 188 2.0E-20 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04700 b2fe5e3177b2f0b5c38fd8304f5c1d14 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.4E-6 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04700 b2fe5e3177b2f0b5c38fd8304f5c1d14 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 6.4E-6 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04700 b2fe5e3177b2f0b5c38fd8304f5c1d14 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 6.4E-6 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04700 b2fe5e3177b2f0b5c38fd8304f5c1d14 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 6.4E-6 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04700 b2fe5e3177b2f0b5c38fd8304f5c1d14 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.4E-6 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04700 b2fe5e3177b2f0b5c38fd8304f5c1d14 223 Gene3D G3DSA:3.40.50.720 2 187 5.0E-29 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS09415 4af2206b567aaa2936eeeb47e9283d85 536 Gene3D G3DSA:3.20.20.450 283 528 1.4E-63 T 11-11-2016 IPR001633 EAL domain vm_RS09415 4af2206b567aaa2936eeeb47e9283d85 536 SMART SM00448 5 117 1.9E-16 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09415 4af2206b567aaa2936eeeb47e9283d85 536 Pfam PF00072 Response regulator receiver domain 7 117 1.5E-18 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09415 4af2206b567aaa2936eeeb47e9283d85 536 SUPERFAMILY SSF52172 6 134 8.68E-28 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS09415 4af2206b567aaa2936eeeb47e9283d85 536 Pfam PF00563 EAL domain 283 514 9.6E-58 T 11-11-2016 IPR001633 EAL domain vm_RS09415 4af2206b567aaa2936eeeb47e9283d85 536 SMART SM00052 273 520 1.9E-46 T 11-11-2016 IPR001633 EAL domain vm_RS09415 4af2206b567aaa2936eeeb47e9283d85 536 Gene3D G3DSA:3.40.50.2300 6 129 8.1E-29 T 11-11-2016 vm_RS09415 4af2206b567aaa2936eeeb47e9283d85 536 SUPERFAMILY SSF141868 283 527 2.09E-61 T 11-11-2016 IPR001633 EAL domain vm_RS08430 71cf10a64522a0a86bbd7c86f2f78f26 158 Pfam PF01047 MarR family 31 89 5.4E-16 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS08430 71cf10a64522a0a86bbd7c86f2f78f26 158 SMART SM00347 24 124 1.9E-24 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS08430 71cf10a64522a0a86bbd7c86f2f78f26 158 Gene3D G3DSA:1.10.10.10 2 139 4.4E-39 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS08430 71cf10a64522a0a86bbd7c86f2f78f26 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 1.3E-6 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS08430 71cf10a64522a0a86bbd7c86f2f78f26 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 1.3E-6 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS08430 71cf10a64522a0a86bbd7c86f2f78f26 158 SUPERFAMILY SSF46785 5 141 7.36E-33 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS04585 3382ed182eb5b458c76ed905938ff56f 155 SMART SM00855 2 117 1.2E-7 T 11-11-2016 IPR013078 Histidine phosphatase superfamily, clade-1 vm_RS04585 3382ed182eb5b458c76ed905938ff56f 155 SUPERFAMILY SSF53254 1 142 3.21E-23 T 11-11-2016 IPR029033 Histidine phosphatase superfamily vm_RS04585 3382ed182eb5b458c76ed905938ff56f 155 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 79 2.9E-10 T 11-11-2016 IPR013078 Histidine phosphatase superfamily, clade-1 vm_RS04585 3382ed182eb5b458c76ed905938ff56f 155 Gene3D G3DSA:3.40.50.1240 1 149 2.1E-39 T 11-11-2016 IPR029033 Histidine phosphatase superfamily vm_RS04585 3382ed182eb5b458c76ed905938ff56f 155 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 1 155 1.3E-37 T 11-11-2016 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0008969 vm_RS13025 3d3c07e1ba00d40adfcc064363bccf03 187 Gene3D G3DSA:3.30.70.1300 42 130 3.4E-30 T 11-11-2016 vm_RS13025 3d3c07e1ba00d40adfcc064363bccf03 187 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 1 187 39.249 T 11-11-2016 IPR003774 Protein of unknown function UPF0301 vm_RS13025 3d3c07e1ba00d40adfcc064363bccf03 187 Pfam PF02622 Uncharacterized ACR, COG1678 12 174 1.2E-51 T 11-11-2016 IPR003774 Protein of unknown function UPF0301 vm_RS13025 3d3c07e1ba00d40adfcc064363bccf03 187 SUPERFAMILY SSF143456 1 187 1.96E-67 T 11-11-2016 vm_RS13025 3d3c07e1ba00d40adfcc064363bccf03 187 Gene3D G3DSA:3.40.1740.10 2 40 7.9E-38 T 11-11-2016 vm_RS13025 3d3c07e1ba00d40adfcc064363bccf03 187 Gene3D G3DSA:3.40.1740.10 131 178 7.9E-38 T 11-11-2016 vm_RS03750 3cafeffb3ff6be2091ab3b676a8d8f12 281 SUPERFAMILY SSF56235 2 253 2.74E-51 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS03750 3cafeffb3ff6be2091ab3b676a8d8f12 281 Gene3D G3DSA:3.60.20.10 1 252 1.5E-69 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS03750 3cafeffb3ff6be2091ab3b676a8d8f12 281 Pfam PF13230 Glutamine amidotransferases class-II 1 256 3.5E-113 T 11-11-2016 IPR026869 Putative glutamine amidotransferase type 2 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 Gene3D G3DSA:3.50.50.60 120 234 4.2E-33 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 300 3.1E-49 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 SUPERFAMILY SSF51905 2 313 3.89E-53 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 5.5E-76 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 5.5E-76 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 5.5E-76 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 5.5E-76 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 5.5E-76 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 5.5E-76 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 5.5E-76 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 5.5E-76 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 238 259 5.5E-76 T 11-11-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 11-11-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 Gene3D G3DSA:3.50.50.60 5 119 2.3E-34 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 1.4E-38 T 11-11-2016 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 1.4E-38 T 11-11-2016 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.4E-38 T 11-11-2016 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 1.4E-38 T 11-11-2016 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 236 252 1.4E-38 T 11-11-2016 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 Gene3D G3DSA:3.50.50.60 235 314 9.7E-9 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS08940 dc4c9c1b9e6d1cde06f1ef701d578778 318 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 313 3.7E-124 T 11-11-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 vm_RS01935 2cba70a64c7ad2b44d68736803f4f9bd 609 PIRSF PIRSF004950 1 609 2.4E-225 T 11-11-2016 IPR012159 Inner membrane protein YejM vm_RS01935 2cba70a64c7ad2b44d68736803f4f9bd 609 Pfam PF00884 Sulfatase 249 524 3.1E-31 T 11-11-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 vm_RS01935 2cba70a64c7ad2b44d68736803f4f9bd 609 SUPERFAMILY SSF53649 245 575 4.71E-60 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 vm_RS01935 2cba70a64c7ad2b44d68736803f4f9bd 609 Pfam PF11893 Domain of unknown function (DUF3413) 4 241 4.9E-63 T 11-11-2016 IPR024588 Inner membrane protein YejM, N-terminal vm_RS01935 2cba70a64c7ad2b44d68736803f4f9bd 609 Gene3D G3DSA:3.40.720.10 249 543 1.5E-41 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 vm_RS09920 c25f0ba632d8e9a582e879b8df91b8e8 213 SUPERFAMILY SSF52540 6 204 6.99E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09920 c25f0ba632d8e9a582e879b8df91b8e8 213 Hamap MF_00551 Uridine kinase [udk]. 4 212 39.611 T 11-11-2016 IPR026008 Uridine kinase GO:0004849|GO:0005524|GO:0016773 KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 vm_RS09920 c25f0ba632d8e9a582e879b8df91b8e8 213 Gene3D G3DSA:3.40.50.300 3 204 4.6E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09920 c25f0ba632d8e9a582e879b8df91b8e8 213 TIGRFAM TIGR00235 udk: uridine kinase 3 211 7.1E-91 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 vm_RS09920 c25f0ba632d8e9a582e879b8df91b8e8 213 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 9 198 3.2E-42 T 11-11-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 vm_RS09920 c25f0ba632d8e9a582e879b8df91b8e8 213 PRINTS PR00988 Uridine kinase signature 178 191 4.4E-37 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 vm_RS09920 c25f0ba632d8e9a582e879b8df91b8e8 213 PRINTS PR00988 Uridine kinase signature 41 52 4.4E-37 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 vm_RS09920 c25f0ba632d8e9a582e879b8df91b8e8 213 PRINTS PR00988 Uridine kinase signature 156 167 4.4E-37 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 vm_RS09920 c25f0ba632d8e9a582e879b8df91b8e8 213 PRINTS PR00988 Uridine kinase signature 142 152 4.4E-37 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 vm_RS09920 c25f0ba632d8e9a582e879b8df91b8e8 213 PRINTS PR00988 Uridine kinase signature 7 24 4.4E-37 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 vm_RS09920 c25f0ba632d8e9a582e879b8df91b8e8 213 PRINTS PR00988 Uridine kinase signature 86 101 4.4E-37 T 11-11-2016 IPR000764 Uridine kinase-like KEGG: 00240+2.7.1.48|KEGG: 00983+2.7.1.48|MetaCyc: PWY-7193 vm_RS04830 39bfff3b9ac2e9a9287425e00e427a23 193 Gene3D G3DSA:3.90.950.10 3 190 1.2E-53 T 11-11-2016 IPR029001 Inosine triphosphate pyrophosphatase-like vm_RS04830 39bfff3b9ac2e9a9287425e00e427a23 193 TIGRFAM TIGR00172 maf: septum formation protein Maf 4 185 3.6E-51 T 11-11-2016 IPR003697 Maf-like protein GO:0005737 vm_RS04830 39bfff3b9ac2e9a9287425e00e427a23 193 Hamap MF_00528 Septum formation protein Maf [maf]. 5 192 30.089 T 11-11-2016 IPR003697 Maf-like protein GO:0005737 vm_RS04830 39bfff3b9ac2e9a9287425e00e427a23 193 SUPERFAMILY SSF52972 1 186 2.29E-56 T 11-11-2016 IPR029001 Inosine triphosphate pyrophosphatase-like vm_RS04830 39bfff3b9ac2e9a9287425e00e427a23 193 PIRSF PIRSF006305 1 193 4.5E-45 T 11-11-2016 IPR003697 Maf-like protein GO:0005737 vm_RS04830 39bfff3b9ac2e9a9287425e00e427a23 193 Pfam PF02545 Maf-like protein 5 187 1.3E-44 T 11-11-2016 IPR003697 Maf-like protein GO:0005737 vm_RS14710 59695746228b490e2204e81092a76d10 494 Gene3D G3DSA:3.40.50.720 1 201 7.6E-75 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14710 59695746228b490e2204e81092a76d10 494 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 355 485 5.5E-16 T 11-11-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 vm_RS14710 59695746228b490e2204e81092a76d10 494 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 210 341 3.3E-25 T 11-11-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 vm_RS14710 59695746228b490e2204e81092a76d10 494 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 22 488 36.634 T 11-11-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 vm_RS14710 59695746228b490e2204e81092a76d10 494 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 35 367 8.2E-124 T 11-11-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 vm_RS14710 59695746228b490e2204e81092a76d10 494 SUPERFAMILY SSF48179 348 487 8.84E-41 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 vm_RS14710 59695746228b490e2204e81092a76d10 494 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 35 204 1.4E-59 T 11-11-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111 vm_RS14710 59695746228b490e2204e81092a76d10 494 SUPERFAMILY SSF51735 27 208 6.87E-58 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14710 59695746228b490e2204e81092a76d10 494 SUPERFAMILY SSF48179 210 341 6.12E-39 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 vm_RS14710 59695746228b490e2204e81092a76d10 494 Gene3D G3DSA:1.10.1040.10 360 484 6.0E-14 T 11-11-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 vm_RS13180 948eecc0c26700a8cb342a9f5dca7f8e 431 Pfam PF09312 SurA N-terminal domain 27 144 2.5E-40 T 11-11-2016 IPR015391 SurA N-terminal vm_RS13180 948eecc0c26700a8cb342a9f5dca7f8e 431 SUPERFAMILY SSF54534 281 383 9.16E-29 T 11-11-2016 vm_RS13180 948eecc0c26700a8cb342a9f5dca7f8e 431 Pfam PF00639 PPIC-type PPIASE domain 287 378 5.5E-22 T 11-11-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 vm_RS13180 948eecc0c26700a8cb342a9f5dca7f8e 431 SUPERFAMILY SSF54534 175 273 1.05E-24 T 11-11-2016 vm_RS13180 948eecc0c26700a8cb342a9f5dca7f8e 431 Pfam PF13616 PPIC-type PPIASE domain 166 272 5.7E-23 T 11-11-2016 vm_RS13180 948eecc0c26700a8cb342a9f5dca7f8e 431 Hamap MF_01183 Chaperone SurA [surA]. 11 426 31.648 T 11-11-2016 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0042710|GO:0043165|GO:0050821|GO:0051082|GO:0051085|GO:0060274 vm_RS13180 948eecc0c26700a8cb342a9f5dca7f8e 431 Gene3D G3DSA:3.10.50.40 281 404 6.6E-33 T 11-11-2016 vm_RS13180 948eecc0c26700a8cb342a9f5dca7f8e 431 Gene3D G3DSA:3.10.50.40 172 275 1.4E-27 T 11-11-2016 vm_RS13180 948eecc0c26700a8cb342a9f5dca7f8e 431 SUPERFAMILY SSF109998 27 199 2.09E-37 T 11-11-2016 IPR027304 Trigger factor/SurA domain vm_RS07955 ff152007483926a58c3019c2a2af190f 525 SMART SM01079 71 266 3.3E-29 T 11-11-2016 IPR006189 CHASE domain vm_RS07955 ff152007483926a58c3019c2a2af190f 525 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 347 504 2.1E-34 T 11-11-2016 IPR000160 GGDEF domain vm_RS07955 ff152007483926a58c3019c2a2af190f 525 Gene3D G3DSA:3.30.70.270 350 506 1.1E-41 T 11-11-2016 vm_RS07955 ff152007483926a58c3019c2a2af190f 525 SUPERFAMILY SSF55073 354 504 3.3E-37 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS07955 ff152007483926a58c3019c2a2af190f 525 SMART SM00267 338 504 3.9E-42 T 11-11-2016 IPR000160 GGDEF domain vm_RS07955 ff152007483926a58c3019c2a2af190f 525 Pfam PF00990 Diguanylate cyclase, GGDEF domain 349 500 1.8E-32 T 11-11-2016 IPR000160 GGDEF domain vm_RS07955 ff152007483926a58c3019c2a2af190f 525 Pfam PF03924 CHASE domain 76 264 2.7E-27 T 11-11-2016 IPR006189 CHASE domain vm_RS12800 ac0444a153b66a872ff9cdbf33d1caa2 169 PIRSF PIRSF028301 1 169 4.5E-57 T 11-11-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 vm_RS12800 ac0444a153b66a872ff9cdbf33d1caa2 169 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 6 162 8.7E-55 T 11-11-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 vm_RS12800 ac0444a153b66a872ff9cdbf33d1caa2 169 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 8 161 6.7E-57 T 11-11-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 vm_RS05930 82b0084a2ab767d7e873a983423f146e 279 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 245 260 2.0E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS05930 82b0084a2ab767d7e873a983423f146e 279 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 260 276 2.0E-6 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS05930 82b0084a2ab767d7e873a983423f146e 279 SUPERFAMILY SSF46689 229 278 1.3E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS05930 82b0084a2ab767d7e873a983423f146e 279 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 230 272 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 vm_RS05930 82b0084a2ab767d7e873a983423f146e 279 Gene3D G3DSA:1.10.10.60 230 278 9.6E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS05930 82b0084a2ab767d7e873a983423f146e 279 SMART SM00342 193 276 1.6E-30 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS05930 82b0084a2ab767d7e873a983423f146e 279 Gene3D G3DSA:1.10.10.60 173 229 3.9E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS05930 82b0084a2ab767d7e873a983423f146e 279 Pfam PF12833 Helix-turn-helix domain 199 277 3.7E-20 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS05930 82b0084a2ab767d7e873a983423f146e 279 SUPERFAMILY SSF46689 179 226 1.25E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS12115 e68bc495007412af4e6869feb2f53577 331 Gene3D G3DSA:3.40.50.300 10 265 2.9E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12115 e68bc495007412af4e6869feb2f53577 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 241 328 1.4E-22 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 vm_RS12115 e68bc495007412af4e6869feb2f53577 331 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS12115 e68bc495007412af4e6869feb2f53577 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 243 308 8.4E-17 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 vm_RS12115 e68bc495007412af4e6869feb2f53577 331 SMART SM00382 43 241 5.1E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS12115 e68bc495007412af4e6869feb2f53577 331 SUPERFAMILY SSF52540 10 262 1.06E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12115 e68bc495007412af4e6869feb2f53577 331 Pfam PF00005 ABC transporter 35 192 1.4E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS06620 052e77e15f6e55aecaa582cc3ba79272 382 Gene3D G3DSA:3.40.190.10 152 312 1.0E-12 T 11-11-2016 vm_RS06620 052e77e15f6e55aecaa582cc3ba79272 382 SUPERFAMILY SSF53850 31 377 3.48E-42 T 11-11-2016 vm_RS06620 052e77e15f6e55aecaa582cc3ba79272 382 PIRSF PIRSF029172 1 380 6.5E-177 T 11-11-2016 IPR027020 Protein ynjB vm_RS06620 052e77e15f6e55aecaa582cc3ba79272 382 Pfam PF13416 Bacterial extracellular solute-binding protein 57 347 1.2E-25 T 11-11-2016 vm_RS06620 052e77e15f6e55aecaa582cc3ba79272 382 Gene3D G3DSA:3.40.190.10 313 351 1.6E-19 T 11-11-2016 vm_RS06620 052e77e15f6e55aecaa582cc3ba79272 382 Gene3D G3DSA:3.40.190.10 30 150 1.6E-19 T 11-11-2016 vm_RS04930 9e16993612bf2623c5a2223db69c0359 405 Gene3D G3DSA:3.30.420.40 223 375 6.1E-53 T 11-11-2016 vm_RS04930 9e16993612bf2623c5a2223db69c0359 405 Pfam PF00480 ROK family 88 390 6.2E-69 T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 vm_RS04930 9e16993612bf2623c5a2223db69c0359 405 SUPERFAMILY SSF46785 10 77 1.22E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS04930 9e16993612bf2623c5a2223db69c0359 405 Gene3D G3DSA:3.30.420.40 86 222 8.3E-34 T 11-11-2016 vm_RS04930 9e16993612bf2623c5a2223db69c0359 405 ProSitePatterns PS01125 ROK family signature. 218 245 - T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 vm_RS04930 9e16993612bf2623c5a2223db69c0359 405 Gene3D G3DSA:1.10.10.10 11 80 5.4E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS04930 9e16993612bf2623c5a2223db69c0359 405 SUPERFAMILY SSF53067 86 393 1.68E-55 T 11-11-2016 vm_RS12070 cfba476fa766a24212efb6ee3bed57e9 432 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 vm_RS12070 cfba476fa766a24212efb6ee3bed57e9 432 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 3 424 2.2E-194 T 11-11-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 vm_RS12070 cfba476fa766a24212efb6ee3bed57e9 432 SUPERFAMILY SSF53383 1 423 1.34E-134 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS12070 cfba476fa766a24212efb6ee3bed57e9 432 Gene3D G3DSA:3.40.640.10 71 316 1.4E-83 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS12070 cfba476fa766a24212efb6ee3bed57e9 432 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 105.342 T 11-11-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188 vm_RS12070 cfba476fa766a24212efb6ee3bed57e9 432 Gene3D G3DSA:3.90.1150.10 319 424 3.6E-43 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS12070 cfba476fa766a24212efb6ee3bed57e9 432 Gene3D G3DSA:3.90.1150.10 2 69 3.6E-43 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS12070 cfba476fa766a24212efb6ee3bed57e9 432 Pfam PF00202 Aminotransferase class-III 33 396 2.3E-76 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 vm_RS02860 175b0a24967a0ee7afe68acbb473d424 562 Gene3D G3DSA:3.30.450.90 165 288 3.0E-49 T 11-11-2016 vm_RS02860 175b0a24967a0ee7afe68acbb473d424 562 SUPERFAMILY SSF160246 1 140 1.1E-31 T 11-11-2016 vm_RS02860 175b0a24967a0ee7afe68acbb473d424 562 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 38 141 6.5E-16 T 11-11-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 vm_RS02860 175b0a24967a0ee7afe68acbb473d424 562 TIGRFAM TIGR02538 type_IV_pilB: type IV-A pilus assembly ATPase PilB 5 559 7.5E-241 T 11-11-2016 IPR013374 ATPase, type IV, pilus assembly, PilB GO:0005524|GO:0008565|GO:0009297 vm_RS02860 175b0a24967a0ee7afe68acbb473d424 562 Pfam PF00437 Type II/IV secretion system protein 189 455 5.9E-85 T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 vm_RS02860 175b0a24967a0ee7afe68acbb473d424 562 Gene3D G3DSA:3.40.50.300 294 560 4.0E-100 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02860 175b0a24967a0ee7afe68acbb473d424 562 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 383 397 - T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 vm_RS02860 175b0a24967a0ee7afe68acbb473d424 562 SUPERFAMILY SSF52540 172 559 3.0E-96 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08825 83b27f92be5888c2aa0e6eafc73079e9 236 SUPERFAMILY SSF46785 3 71 5.71E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS08825 83b27f92be5888c2aa0e6eafc73079e9 236 Gene3D G3DSA:1.10.10.10 3 71 4.8E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS08825 83b27f92be5888c2aa0e6eafc73079e9 236 Gene3D G3DSA:3.40.1410.10 87 223 1.6E-47 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain vm_RS08825 83b27f92be5888c2aa0e6eafc73079e9 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 5 67 2.0E-17 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS08825 83b27f92be5888c2aa0e6eafc73079e9 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 27 41 2.9E-8 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS08825 83b27f92be5888c2aa0e6eafc73079e9 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 57 2.9E-8 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS08825 83b27f92be5888c2aa0e6eafc73079e9 236 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 3 232 1.9E-99 T 11-11-2016 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 vm_RS08825 83b27f92be5888c2aa0e6eafc73079e9 236 SMART SM00345 8 67 3.3E-17 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS08825 83b27f92be5888c2aa0e6eafc73079e9 236 Pfam PF07702 UTRA domain 90 227 7.3E-35 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 vm_RS08825 83b27f92be5888c2aa0e6eafc73079e9 236 SUPERFAMILY SSF64288 94 230 4.24E-40 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain vm_RS08825 83b27f92be5888c2aa0e6eafc73079e9 236 SMART SM00866 90 227 1.5E-33 T 11-11-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 PIRSF PIRSF000207 8 609 2.4E-266 T 11-11-2016 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 Pfam PF00175 Oxidoreductase NAD-binding domain 467 573 1.7E-18 T 11-11-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 TIGRFAM TIGR01931 cysJ: sulfite reductase [NADPH] flavoprotein, alpha-component 15 609 5.5E-256 T 11-11-2016 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 Gene3D G3DSA:2.40.30.10 394 464 6.7E-40 T 11-11-2016 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 Gene3D G3DSA:2.40.30.10 239 290 6.7E-40 T 11-11-2016 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 SUPERFAMILY SSF52343 454 609 2.36E-52 T 11-11-2016 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 Pfam PF00667 FAD binding domain 242 434 3.0E-32 T 11-11-2016 IPR003097 FAD-binding, type 1 GO:0016491|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 Gene3D G3DSA:1.20.990.10 291 393 9.4E-36 T 11-11-2016 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3 GO:0016491|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 Hamap MF_01541 Sulfite reductase [NADPH] flavoprotein alpha-component [cysJ]. 7 609 49.821 T 11-11-2016 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria GO:0000103|GO:0004783|GO:0010181|GO:0019344|GO:0050660|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 466 485 5.3E-27 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 558 566 5.3E-27 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 280 290 5.3E-27 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 491 500 5.3E-27 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 535 551 5.3E-27 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 396 403 5.3E-27 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 504 515 5.3E-27 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 Gene3D G3DSA:3.40.50.80 465 608 2.6E-61 T 11-11-2016 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 Gene3D G3DSA:3.40.50.360 70 219 3.1E-47 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 Pfam PF00258 Flavodoxin 76 205 8.8E-32 T 11-11-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 SUPERFAMILY SSF63380 239 455 8.72E-67 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 PRINTS PR00369 Flavodoxin signature 75 88 8.7E-14 T 11-11-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 PRINTS PR00369 Flavodoxin signature 155 165 8.7E-14 T 11-11-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 PRINTS PR00369 Flavodoxin signature 123 134 8.7E-14 T 11-11-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 PRINTS PR00369 Flavodoxin signature 179 198 8.7E-14 T 11-11-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 vm_RS13660 5e6b0764ab6aabbd8b3346b7a4b7cb3d 609 SUPERFAMILY SSF52218 73 218 1.08E-46 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 SMART SM00846 3 152 7.1E-71 T 11-11-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 Gene3D G3DSA:3.40.50.720 3 160 1.6E-60 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 323 1.6E-118 T 11-11-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 157 313 1.5E-59 T 11-11-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 PIRSF PIRSF000149 1 331 1.6E-116 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 150 157 - T 11-11-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 SUPERFAMILY SSF55347 152 314 2.41E-64 T 11-11-2016 vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 173 189 1.4E-28 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 229 246 1.4E-28 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 1.4E-28 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 108 121 1.4E-28 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 146 164 1.4E-28 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 SUPERFAMILY SSF51735 1 179 4.44E-53 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 152 1.4E-50 T 11-11-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS09545 7e6f0b128b3f733be930806ab1ee1c06 333 Gene3D G3DSA:3.30.360.10 161 315 1.2E-68 T 11-11-2016 vm_RS14290 add6135e04a3a55f7b312d65796232fd 438 Pfam PF10996 Beta-Casp domain 234 364 1.8E-25 T 11-11-2016 IPR022712 Beta-Casp domain vm_RS14290 add6135e04a3a55f7b312d65796232fd 438 SMART SM00849 13 208 1.2E-18 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS14290 add6135e04a3a55f7b312d65796232fd 438 SMART SM01027 234 364 5.4E-54 T 11-11-2016 IPR022712 Beta-Casp domain vm_RS14290 add6135e04a3a55f7b312d65796232fd 438 Pfam PF00753 Metallo-beta-lactamase superfamily 14 204 8.6E-13 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS14290 add6135e04a3a55f7b312d65796232fd 438 SUPERFAMILY SSF56281 1 432 1.24E-119 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS14290 add6135e04a3a55f7b312d65796232fd 438 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 378 438 3.0E-14 T 11-11-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain vm_RS14290 add6135e04a3a55f7b312d65796232fd 438 Gene3D G3DSA:3.60.15.10 3 240 1.1E-40 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS09895 8dd851cc5e5a231a87e4808f96fdf315 424 SUPERFAMILY SSF56935 26 424 6.41E-87 T 11-11-2016 vm_RS09895 8dd851cc5e5a231a87e4808f96fdf315 424 Gene3D G3DSA:2.40.160.60 25 424 2.3E-126 T 11-11-2016 vm_RS09895 8dd851cc5e5a231a87e4808f96fdf315 424 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 17 424 9.1E-120 T 11-11-2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) vm_RS00325 dfeb83da1b43764062e801ae6a08a71b 397 Pfam PF07690 Major Facilitator Superfamily 14 352 2.3E-46 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 vm_RS00325 dfeb83da1b43764062e801ae6a08a71b 397 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 6 357 2.6E-68 T 11-11-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 vm_RS00325 dfeb83da1b43764062e801ae6a08a71b 397 Gene3D G3DSA:1.20.1250.20 208 381 9.9E-12 T 11-11-2016 vm_RS00325 dfeb83da1b43764062e801ae6a08a71b 397 ProSitePatterns PS00216 Sugar transport proteins signature 1. 63 79 - T 11-11-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 vm_RS00325 dfeb83da1b43764062e801ae6a08a71b 397 Gene3D G3DSA:1.20.1250.20 8 188 1.7E-31 T 11-11-2016 vm_RS00325 dfeb83da1b43764062e801ae6a08a71b 397 SUPERFAMILY SSF103473 8 383 2.88E-58 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS04105 1795a86c0594cfa7d77e788d18dd5b42 484 Pfam PF14559 Tetratricopeptide repeat 355 416 8.9E-10 T 11-11-2016 vm_RS04105 1795a86c0594cfa7d77e788d18dd5b42 484 SUPERFAMILY SSF48452 310 455 1.49E-18 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS04105 1795a86c0594cfa7d77e788d18dd5b42 484 Pfam PF01435 Peptidase family M48 70 255 4.1E-27 T 11-11-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 vm_RS04105 1795a86c0594cfa7d77e788d18dd5b42 484 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 4 483 39.604 T 11-11-2016 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 vm_RS04105 1795a86c0594cfa7d77e788d18dd5b42 484 Gene3D G3DSA:1.25.40.10 310 455 9.9E-21 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS04105 1795a86c0594cfa7d77e788d18dd5b42 484 Gene3D G3DSA:3.30.2010.10 64 147 7.8E-19 T 11-11-2016 vm_RS04105 1795a86c0594cfa7d77e788d18dd5b42 484 SMART SM00028 307 340 0.14 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS04105 1795a86c0594cfa7d77e788d18dd5b42 484 SMART SM00028 426 459 71.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS05680 83e0f59817c152d594639d36bd6cf84f 410 Pfam PF01547 Bacterial extracellular solute-binding protein 46 284 5.3E-15 T 11-11-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 vm_RS05680 83e0f59817c152d594639d36bd6cf84f 410 SUPERFAMILY SSF53850 20 404 1.34E-43 T 11-11-2016 vm_RS05680 83e0f59817c152d594639d36bd6cf84f 410 Gene3D G3DSA:3.40.190.10 138 339 1.1E-20 T 11-11-2016 vm_RS14795 f24be07a29d1810076f1659a0c7cde7a 211 Gene3D G3DSA:3.30.230.30 6 135 5.0E-42 T 11-11-2016 IPR001498 Impact, N-terminal vm_RS14795 f24be07a29d1810076f1659a0c7cde7a 211 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 82 111 - T 11-11-2016 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site vm_RS14795 f24be07a29d1810076f1659a0c7cde7a 211 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 4 201 4.9E-67 T 11-11-2016 IPR015796 Impact family, bacterial/archaeal vm_RS14795 f24be07a29d1810076f1659a0c7cde7a 211 SUPERFAMILY SSF54211 4 134 9.86E-43 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS14795 f24be07a29d1810076f1659a0c7cde7a 211 Pfam PF09186 Domain of unknown function (DUF1949) 143 196 1.0E-11 T 11-11-2016 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal vm_RS14795 f24be07a29d1810076f1659a0c7cde7a 211 Gene3D G3DSA:3.30.70.240 139 206 1.9E-12 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS14795 f24be07a29d1810076f1659a0c7cde7a 211 SUPERFAMILY SSF54980 138 201 2.09E-9 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS14795 f24be07a29d1810076f1659a0c7cde7a 211 Pfam PF01205 Uncharacterized protein family UPF0029 20 127 3.8E-24 T 11-11-2016 IPR001498 Impact, N-terminal vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 SUPERFAMILY SSF52313 17 243 3.53E-96 T 11-11-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 PRINTS PR00395 Ribosomal protein S2 signature 98 115 8.6E-38 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 PRINTS PR00395 Ribosomal protein S2 signature 186 197 8.6E-38 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 PRINTS PR00395 Ribosomal protein S2 signature 207 221 8.6E-38 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 PRINTS PR00395 Ribosomal protein S2 signature 48 57 8.6E-38 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 PRINTS PR00395 Ribosomal protein S2 signature 169 186 8.6E-38 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 PRINTS PR00395 Ribosomal protein S2 signature 17 35 8.6E-38 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 Gene3D G3DSA:1.10.287.610 111 163 8.3E-27 T 11-11-2016 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 169 193 - T 11-11-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 Gene3D G3DSA:3.40.50.10490 169 241 5.2E-66 T 11-11-2016 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 Gene3D G3DSA:3.40.50.10490 34 110 5.2E-66 T 11-11-2016 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 15 237 9.5E-108 T 11-11-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 13 236 41.152 T 11-11-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 17 28 - T 11-11-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 vm_RS03605 52d76e19dfe22f66aefba3cdf4322892 253 Pfam PF00318 Ribosomal protein S2 20 235 1.5E-94 T 11-11-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 Gene3D G3DSA:1.10.10.60 458 512 1.2E-24 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 229 242 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 SUPERFAMILY SSF52540 205 443 3.63E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 Gene3D G3DSA:1.10.8.60 377 447 6.1E-17 T 11-11-2016 vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 464 512 7.2E-27 T 11-11-2016 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 SMART SM00382 225 368 5.4E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 Pfam PF00989 PAS fold 84 130 2.1E-5 T 11-11-2016 IPR013767 PAS fold GO:0006355 vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 417 426 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 290 305 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 SUPERFAMILY SSF55021 1 68 1.48E-6 T 11-11-2016 vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 SMART SM00091 80 146 9.2E-6 T 11-11-2016 IPR000014 PAS domain vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 SUPERFAMILY SSF46689 456 511 2.09E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 Pfam PF00158 Sigma-54 interaction domain 206 370 1.7E-57 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 Gene3D G3DSA:3.30.450.20 79 171 1.0E-10 T 11-11-2016 vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 Gene3D G3DSA:3.30.70.260 1 68 9.3E-7 T 11-11-2016 vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 Gene3D G3DSA:3.40.50.300 202 376 2.5E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08285 5bb3c9a4620f56104ea335361e9afb44 513 SUPERFAMILY SSF55785 83 161 4.19E-8 T 11-11-2016 IPR000014 PAS domain vm_RS03090 d2661e6fe0ec733f60c51adc46f53e05 312 Gene3D G3DSA:3.80.30.20 22 252 1.6E-33 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe vm_RS03090 d2661e6fe0ec733f60c51adc46f53e05 312 Pfam PF16199 Radical_SAM C-terminal domain 209 280 1.8E-18 T 11-11-2016 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 vm_RS03090 d2661e6fe0ec733f60c51adc46f53e05 312 Pfam PF04055 Radical SAM superfamily 43 201 1.6E-17 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS03090 d2661e6fe0ec733f60c51adc46f53e05 312 SUPERFAMILY SSF102114 13 268 9.16E-48 T 11-11-2016 vm_RS03090 d2661e6fe0ec733f60c51adc46f53e05 312 TIGRFAM TIGR01212 TIGR01212: radical SAM protein, TIGR01212 family 6 300 8.7E-141 T 11-11-2016 IPR005911 Protein YhcC-like GO:0051536 vm_RS03090 d2661e6fe0ec733f60c51adc46f53e05 312 SMART SM00729 23 247 1.1E-43 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 vm_RS06940 293c959aef9d5a0bf0f0348c2257e389 228 Pfam PF00072 Response regulator receiver domain 5 116 1.1E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06940 293c959aef9d5a0bf0f0348c2257e389 228 Pfam PF12431 Transcriptional regulator 133 159 6.6E-8 T 11-11-2016 IPR028141 Transcriptional regulator vm_RS06940 293c959aef9d5a0bf0f0348c2257e389 228 Gene3D G3DSA:3.40.50.2300 3 127 4.6E-29 T 11-11-2016 vm_RS06940 293c959aef9d5a0bf0f0348c2257e389 228 PIRSF PIRSF006171 1 226 2.1E-82 T 11-11-2016 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 vm_RS06940 293c959aef9d5a0bf0f0348c2257e389 228 SMART SM00448 3 116 2.5E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06940 293c959aef9d5a0bf0f0348c2257e389 228 SUPERFAMILY SSF52172 3 171 1.01E-33 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 534 546 - T 11-11-2016 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 Gene3D G3DSA:1.20.1440.90 273 386 1.5E-32 T 11-11-2016 vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 876 17.905 T 11-11-2016 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 SUPERFAMILY SSF51621 6 876 0.0 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 134 145 - T 11-11-2016 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 186 202 1.4E-66 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 245 260 1.4E-66 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 532 552 1.4E-66 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 383 403 1.4E-66 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 133 146 1.4E-66 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 574 603 1.4E-66 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 706 732 1.4E-66 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS01710 62869646bc8999cf01fdc39a91d50d7b 876 Pfam PF00311 Phosphoenolpyruvate carboxylase 129 876 4.3E-288 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS06950 147c23c7b90e9c72a954a4d7d76f860b 325 Pfam PF01584 CheW-like domain 37 162 2.2E-29 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS06950 147c23c7b90e9c72a954a4d7d76f860b 325 Pfam PF00072 Response regulator receiver domain 195 316 2.7E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06950 147c23c7b90e9c72a954a4d7d76f860b 325 Gene3D G3DSA:2.30.30.40 103 154 3.4E-11 T 11-11-2016 vm_RS06950 147c23c7b90e9c72a954a4d7d76f860b 325 SMART SM00260 14 160 9.6E-25 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS06950 147c23c7b90e9c72a954a4d7d76f860b 325 SMART SM00448 193 318 6.0E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06950 147c23c7b90e9c72a954a4d7d76f860b 325 SUPERFAMILY SSF50341 7 165 6.15E-32 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS06950 147c23c7b90e9c72a954a4d7d76f860b 325 Gene3D G3DSA:3.40.50.2300 191 313 1.6E-29 T 11-11-2016 vm_RS06950 147c23c7b90e9c72a954a4d7d76f860b 325 Gene3D G3DSA:2.40.50.180 66 102 9.7E-4 T 11-11-2016 vm_RS06950 147c23c7b90e9c72a954a4d7d76f860b 325 PIRSF PIRSF002867 1 325 9.3E-102 T 11-11-2016 IPR024181 Chemotaxis response regulator CheV vm_RS06950 147c23c7b90e9c72a954a4d7d76f860b 325 SUPERFAMILY SSF52172 193 309 1.04E-27 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS04320 ecdedbe6aac7439bcbaf5a7fef8b12ca 349 PIRSF PIRSF002888 1 328 1.1E-90 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 vm_RS04320 ecdedbe6aac7439bcbaf5a7fef8b12ca 349 PRINTS PR00955 Flagellar motor switch protein FliM signature 211 229 2.3E-18 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 vm_RS04320 ecdedbe6aac7439bcbaf5a7fef8b12ca 349 PRINTS PR00955 Flagellar motor switch protein FliM signature 113 132 2.3E-18 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 vm_RS04320 ecdedbe6aac7439bcbaf5a7fef8b12ca 349 PRINTS PR00955 Flagellar motor switch protein FliM signature 88 104 2.3E-18 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 vm_RS04320 ecdedbe6aac7439bcbaf5a7fef8b12ca 349 PRINTS PR00955 Flagellar motor switch protein FliM signature 2 15 2.3E-18 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 vm_RS04320 ecdedbe6aac7439bcbaf5a7fef8b12ca 349 SUPERFAMILY SSF101801 248 323 1.96E-13 T 11-11-2016 IPR001543 Surface presentation of antigen (SpoA) vm_RS04320 ecdedbe6aac7439bcbaf5a7fef8b12ca 349 Pfam PF02154 Flagellar motor switch protein FliM 37 229 1.8E-81 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 vm_RS04320 ecdedbe6aac7439bcbaf5a7fef8b12ca 349 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 3 319 2.6E-119 T 11-11-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 vm_RS04320 ecdedbe6aac7439bcbaf5a7fef8b12ca 349 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 250 319 1.1E-16 T 11-11-2016 IPR001543 Surface presentation of antigen (SpoA) vm_RS04320 ecdedbe6aac7439bcbaf5a7fef8b12ca 349 SUPERFAMILY SSF103039 54 230 3.92E-22 T 11-11-2016 IPR028976 CheC-like domain vm_RS04320 ecdedbe6aac7439bcbaf5a7fef8b12ca 349 SUPERFAMILY SSF103039 4 13 3.92E-22 T 11-11-2016 IPR028976 CheC-like domain vm_RS04320 ecdedbe6aac7439bcbaf5a7fef8b12ca 349 Gene3D G3DSA:2.30.330.10 243 323 6.9E-9 T 11-11-2016 vm_RS11130 cd948d1cb79d441c4d022c3ec598f2e4 358 SUPERFAMILY SSF69279 182 348 1.3E-46 T 11-11-2016 vm_RS11130 cd948d1cb79d441c4d022c3ec598f2e4 358 PIRSF PIRSF004440 1 356 1.7E-97 T 11-11-2016 IPR026276 Baseplate protein GpP vm_RS11130 cd948d1cb79d441c4d022c3ec598f2e4 358 Gene3D G3DSA:3.55.50.10 108 180 1.6E-32 T 11-11-2016 vm_RS11130 cd948d1cb79d441c4d022c3ec598f2e4 358 Pfam PF05954 Phage late control gene D protein (GPD) 27 302 5.5E-14 T 11-11-2016 vm_RS11130 cd948d1cb79d441c4d022c3ec598f2e4 358 Gene3D G3DSA:2.30.300.10 2 107 2.2E-67 T 11-11-2016 vm_RS11130 cd948d1cb79d441c4d022c3ec598f2e4 358 Gene3D G3DSA:2.30.300.10 282 354 2.2E-67 T 11-11-2016 vm_RS11130 cd948d1cb79d441c4d022c3ec598f2e4 358 Gene3D G3DSA:3.30.1920.10 204 278 2.7E-27 T 11-11-2016 IPR023399 Baseplate-like protein, two-layer sandwich domain vm_RS11130 cd948d1cb79d441c4d022c3ec598f2e4 358 SUPERFAMILY SSF69279 3 180 5.1E-57 T 11-11-2016 vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 SUPERFAMILY SSF50156 218 338 7.71E-15 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 Gene3D G3DSA:3.90.226.10 337 530 1.4E-64 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 Gene3D G3DSA:3.90.226.10 642 662 1.4E-64 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 SMART SM00228 247 324 2.0E-8 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 Gene3D G3DSA:2.30.42.10 253 336 4.1E-19 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 Gene3D G3DSA:3.30.750.44 164 252 1.3E-5 T 11-11-2016 vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 Pfam PF08180 B melanoma antigen family 9 37 3.9E-11 T 11-11-2016 IPR012530 B melanoma antigen vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 SUPERFAMILY SSF52096 351 532 1.82E-72 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 SUPERFAMILY SSF52096 166 265 1.82E-72 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 531 663 2.2E-40 T 11-11-2016 IPR020992 Tail specific protease, C-terminal vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 Pfam PF03572 Peptidase family S41 357 526 7.7E-52 T 11-11-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 SMART SM00245 327 528 4.4E-67 T 11-11-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 240 321 3.2E-13 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS07455 83cfcad2a110f6d7d1555c2ee96681c2 665 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 197 548 1.8E-112 T 11-11-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 vm_RS08695 0599ad631cfcc923f9adfca095b53a98 124 Pfam PF03788 LrgA family 20 111 1.2E-23 T 11-11-2016 IPR005538 LrgA/CidA family GO:0016021 vm_RS08695 0599ad631cfcc923f9adfca095b53a98 124 Hamap MF_01144 UPF0299 membrane protein YohJ [yohJ]. 1 120 22.316 T 11-11-2016 IPR022957 Uncharacterised protein family UPF0299 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 Gene3D G3DSA:2.70.150.10 217 364 3.7E-24 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 PRINTS PR00941 Cadmium-transporting ATPase signature 329 345 2.3E-7 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 PRINTS PR00941 Cadmium-transporting ATPase signature 90 111 2.3E-7 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 PRINTS PR00941 Cadmium-transporting ATPase signature 249 269 2.3E-7 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 PRINTS PR00941 Cadmium-transporting ATPase signature 348 362 2.3E-7 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 Pfam PF00403 Heavy-metal-associated domain 81 120 4.3E-9 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 SUPERFAMILY SSF55008 75 140 1.1E-13 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 Gene3D G3DSA:3.30.70.100 77 139 6.7E-16 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 SUPERFAMILY SSF56784 462 482 2.24E-50 T 11-11-2016 IPR023214 HAD-like domain vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 SUPERFAMILY SSF56784 521 759 2.24E-50 T 11-11-2016 IPR023214 HAD-like domain vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 Gene3D G3DSA:3.40.1110.10 478 588 2.1E-20 T 11-11-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 237 738 9.6E-78 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 ProSitePatterns PS01047 Heavy-metal-associated domain. 81 110 - T 11-11-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 ProSitePatterns PS01229 Hypothetical cof family signature 2. 659 681 - T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 586 597 1.7E-27 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 313 327 1.7E-27 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 464 478 1.7E-27 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 608 618 1.7E-27 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 682 694 1.7E-27 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 659 678 1.7E-27 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 Gene3D G3DSA:3.40.50.1000 589 727 2.6E-44 T 11-11-2016 IPR023214 HAD-like domain vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 Gene3D G3DSA:3.40.50.1000 437 477 2.6E-44 T 11-11-2016 IPR023214 HAD-like domain vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 Pfam PF00122 E1-E2 ATPase 235 455 1.2E-61 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 SUPERFAMILY SSF81653 267 363 3.53E-21 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 Pfam PF00702 haloacid dehalogenase-like hydrolase 460 672 5.4E-40 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 SUPERFAMILY SSF81665 364 458 4.45E-21 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 SUPERFAMILY SSF81665 708 747 4.45E-21 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 SUPERFAMILY SSF81665 217 268 4.45E-21 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 466 472 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 214 582 5.6E-96 T 11-11-2016 vm_RS09945 3ff928606d140fbeedda2526ff19105f 773 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 214 761 8.3E-174 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 vm_RS02150 d1dcd40dfce5acf19ee5fe02a0907e6c 299 Pfam PF10987 Protein of unknown function (DUF2806) 58 276 5.9E-85 T 11-11-2016 IPR021254 Protein of unknown function DUF2806 vm_RS02150 d1dcd40dfce5acf19ee5fe02a0907e6c 299 TIGRFAM TIGR03899 TIGR03899: TIGR03899 family protein 37 286 1.3E-109 T 11-11-2016 IPR021254 Protein of unknown function DUF2806 vm_RS04785 78acdd467c26e269b041bb9204832514 370 Gene3D G3DSA:3.30.360.10 142 350 1.6E-76 T 11-11-2016 vm_RS04785 78acdd467c26e269b041bb9204832514 370 SUPERFAMILY SSF55347 133 354 8.18E-79 T 11-11-2016 vm_RS04785 78acdd467c26e269b041bb9204832514 370 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 2 118 1.2E-22 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 vm_RS04785 78acdd467c26e269b041bb9204832514 370 SUPERFAMILY SSF51735 1 146 3.03E-51 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04785 78acdd467c26e269b041bb9204832514 370 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 261 275 - T 11-11-2016 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS04785 78acdd467c26e269b041bb9204832514 370 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 143 353 1.5E-57 T 11-11-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 vm_RS04785 78acdd467c26e269b041bb9204832514 370 Gene3D G3DSA:3.40.50.720 1 141 4.2E-61 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04785 78acdd467c26e269b041bb9204832514 370 SMART SM00859 2 121 1.2E-21 T 11-11-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 vm_RS04785 78acdd467c26e269b041bb9204832514 370 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 1 366 3.5E-190 T 11-11-2016 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS04785 78acdd467c26e269b041bb9204832514 370 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 367 32.132 T 11-11-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS04785 78acdd467c26e269b041bb9204832514 370 PIRSF PIRSF000148 1 370 7.4E-67 T 11-11-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS00640 acb4ae06a6e4d6f5833833c78687079c 156 SUPERFAMILY SSF47240 2 155 5.5E-44 T 11-11-2016 IPR009078 Ferritin-like superfamily vm_RS00640 acb4ae06a6e4d6f5833833c78687079c 156 ProSitePatterns PS00818 Dps protein family signature 1. 38 54 - T 11-11-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 vm_RS00640 acb4ae06a6e4d6f5833833c78687079c 156 PIRSF PIRSF005900 1 156 2.6E-43 T 11-11-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 vm_RS00640 acb4ae06a6e4d6f5833833c78687079c 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 62 78 7.8E-13 T 11-11-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 vm_RS00640 acb4ae06a6e4d6f5833833c78687079c 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 38 54 7.8E-13 T 11-11-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 vm_RS00640 acb4ae06a6e4d6f5833833c78687079c 156 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 133 151 7.8E-13 T 11-11-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 vm_RS00640 acb4ae06a6e4d6f5833833c78687079c 156 Pfam PF00210 Ferritin-like domain 18 155 1.3E-23 T 11-11-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 vm_RS00640 acb4ae06a6e4d6f5833833c78687079c 156 Gene3D G3DSA:1.20.1260.10 1 156 1.1E-56 T 11-11-2016 IPR012347 Ferritin-related vm_RS14280 e2bc25997a6d02c37e8f06a760f5b46c 190 Gene3D G3DSA:3.40.470.10 2 189 4.5E-45 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 vm_RS14280 e2bc25997a6d02c37e8f06a760f5b46c 190 SMART SM00987 26 182 4.0E-30 T 11-11-2016 vm_RS14280 e2bc25997a6d02c37e8f06a760f5b46c 190 SMART SM00986 26 182 4.0E-30 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 vm_RS14280 e2bc25997a6d02c37e8f06a760f5b46c 190 Pfam PF03167 Uracil DNA glycosylase superfamily 31 178 2.2E-25 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 vm_RS14280 e2bc25997a6d02c37e8f06a760f5b46c 190 SUPERFAMILY SSF52141 2 189 5.89E-57 T 11-11-2016 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 vm_RS09510 d50ddcc55c80194e360ea1a89e36ebf0 157 Gene3D G3DSA:3.40.35.10 3 157 6.9E-59 T 11-11-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 vm_RS09510 d50ddcc55c80194e360ea1a89e36ebf0 157 Pfam PF03830 PTS system sorbose subfamily IIB component 4 149 8.3E-52 T 11-11-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 vm_RS09510 d50ddcc55c80194e360ea1a89e36ebf0 157 TIGRFAM TIGR00854 pts-sorbose: PTS system, mannose/fructose/sorbose family, IIB component 3 151 8.5E-68 T 11-11-2016 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup GO:0005737|GO:0008982|GO:0009401 vm_RS09510 d50ddcc55c80194e360ea1a89e36ebf0 157 SUPERFAMILY SSF52728 3 156 4.32E-52 T 11-11-2016 IPR004720 Phosphotransferase system, sorbose subfamily IIB component GO:0005737|GO:0008982|GO:0009401 vm_RS00620 c7f3120961a2d3e5b515f33b0556f4f6 275 SUPERFAMILY SSF56784 8 274 1.49E-69 T 11-11-2016 IPR023214 HAD-like domain vm_RS00620 c7f3120961a2d3e5b515f33b0556f4f6 275 Pfam PF08282 haloacid dehalogenase-like hydrolase 13 270 3.2E-68 T 11-11-2016 IPR023214 HAD-like domain vm_RS00620 c7f3120961a2d3e5b515f33b0556f4f6 275 Gene3D G3DSA:3.40.50.1000 187 274 1.4E-56 T 11-11-2016 IPR023214 HAD-like domain vm_RS00620 c7f3120961a2d3e5b515f33b0556f4f6 275 Gene3D G3DSA:3.40.50.1000 4 80 1.4E-56 T 11-11-2016 IPR023214 HAD-like domain vm_RS00620 c7f3120961a2d3e5b515f33b0556f4f6 275 Gene3D G3DSA:3.30.1240.10 91 186 4.9E-26 T 11-11-2016 vm_RS00620 c7f3120961a2d3e5b515f33b0556f4f6 275 ProSitePatterns PS01228 Hypothetical cof family signature 1. 12 23 - T 11-11-2016 IPR000150 Cof protein GO:0016787 vm_RS00620 c7f3120961a2d3e5b515f33b0556f4f6 275 ProSitePatterns PS01229 Hypothetical cof family signature 2. 222 244 - T 11-11-2016 vm_RS00620 c7f3120961a2d3e5b515f33b0556f4f6 275 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 12 241 1.3E-32 T 11-11-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 vm_RS00620 c7f3120961a2d3e5b515f33b0556f4f6 275 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 12 270 1.9E-61 T 11-11-2016 IPR000150 Cof protein GO:0016787 vm_RS17380 71af517efc0799b43f8fcdb14675956f 331 Pfam PF00682 HMGL-like 1 261 9.0E-97 T 11-11-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 vm_RS17380 71af517efc0799b43f8fcdb14675956f 331 SUPERFAMILY SSF51569 1 279 5.86E-95 T 11-11-2016 vm_RS17380 71af517efc0799b43f8fcdb14675956f 331 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 187 200 - T 11-11-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 vm_RS17380 71af517efc0799b43f8fcdb14675956f 331 Gene3D G3DSA:3.20.20.70 1 330 3.7E-138 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS10135 86536d556dc90a2acf52aa9ca0e41fb8 195 SUPERFAMILY SSF110997 118 191 1.96E-14 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 vm_RS10135 86536d556dc90a2acf52aa9ca0e41fb8 195 Pfam PF05036 Sporulation related domain 119 182 3.7E-10 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 vm_RS10135 86536d556dc90a2acf52aa9ca0e41fb8 195 Gene3D G3DSA:3.30.70.1070 114 192 2.3E-20 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 vm_RS09420 9926cffbedd250d483caf080a48f7dd9 434 SUPERFAMILY SSF47384 178 226 2.75E-6 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS09420 9926cffbedd250d483caf080a48f7dd9 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 371 6.2E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09420 9926cffbedd250d483caf080a48f7dd9 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 425 6.2E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09420 9926cffbedd250d483caf080a48f7dd9 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 406 6.2E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09420 9926cffbedd250d483caf080a48f7dd9 434 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 385 6.2E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09420 9926cffbedd250d483caf080a48f7dd9 434 Pfam PF00512 His Kinase A (phospho-acceptor) domain 188 263 5.6E-8 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS09420 9926cffbedd250d483caf080a48f7dd9 434 SUPERFAMILY SSF55874 269 426 8.77E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09420 9926cffbedd250d483caf080a48f7dd9 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 315 426 3.1E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09420 9926cffbedd250d483caf080a48f7dd9 434 Gene3D G3DSA:3.30.565.10 274 425 2.0E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09420 9926cffbedd250d483caf080a48f7dd9 434 SMART SM00387 312 428 1.4E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05985 21cd5de19ff21470d3dd6a7a43a7f705 467 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 376 466 1.8E-17 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 vm_RS05985 21cd5de19ff21470d3dd6a7a43a7f705 467 Gene3D G3DSA:3.40.50.2300 369 466 1.8E-37 T 11-11-2016 vm_RS05985 21cd5de19ff21470d3dd6a7a43a7f705 467 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 13 342 3.0E-75 T 11-11-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 vm_RS05985 21cd5de19ff21470d3dd6a7a43a7f705 467 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 375 459 1.7E-33 T 11-11-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 vm_RS05985 21cd5de19ff21470d3dd6a7a43a7f705 467 SUPERFAMILY SSF52794 373 466 3.31E-30 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 vm_RS11330 f4c91a4d0db4e50a1972d1e9c6d2dc33 573 Gene3D G3DSA:3.30.20.10 190 247 4.3E-21 T 11-11-2016 vm_RS11330 f4c91a4d0db4e50a1972d1e9c6d2dc33 573 SUPERFAMILY SSF53955 89 350 3.37E-53 T 11-11-2016 IPR023346 Lysozyme-like domain vm_RS11330 f4c91a4d0db4e50a1972d1e9c6d2dc33 573 Gene3D G3DSA:2.10.10.20 436 481 3.1E-20 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS11330 f4c91a4d0db4e50a1972d1e9c6d2dc33 573 SMART SM00495 526 571 7.7E-5 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS11330 f4c91a4d0db4e50a1972d1e9c6d2dc33 573 SMART SM00495 438 480 3.2E-16 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS11330 f4c91a4d0db4e50a1972d1e9c6d2dc33 573 Pfam PF00182 Chitinase class I 106 325 6.5E-31 T 11-11-2016 IPR000726 Glycoside hydrolase, family 19, catalytic GO:0004568|GO:0006032|GO:0016998 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 vm_RS11330 f4c91a4d0db4e50a1972d1e9c6d2dc33 573 SUPERFAMILY SSF51055 431 481 2.75E-16 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS11330 f4c91a4d0db4e50a1972d1e9c6d2dc33 573 Gene3D G3DSA:1.10.530.10 90 153 2.4E-34 T 11-11-2016 vm_RS11330 f4c91a4d0db4e50a1972d1e9c6d2dc33 573 Gene3D G3DSA:1.10.530.10 248 338 2.4E-34 T 11-11-2016 vm_RS11330 f4c91a4d0db4e50a1972d1e9c6d2dc33 573 Pfam PF02839 Carbohydrate binding domain 439 477 6.7E-15 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS04865 c5409457fcbe82eac8fe31a9aac1b431 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 76 2.8E-37 T 11-11-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS04865 c5409457fcbe82eac8fe31a9aac1b431 78 Gene3D G3DSA:1.10.1200.10 3 76 1.9E-35 T 11-11-2016 IPR009081 Phosphopantetheine binding ACP domain vm_RS04865 c5409457fcbe82eac8fe31a9aac1b431 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.852 T 11-11-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS04865 c5409457fcbe82eac8fe31a9aac1b431 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 2.4E-16 T 11-11-2016 IPR009081 Phosphopantetheine binding ACP domain vm_RS04865 c5409457fcbe82eac8fe31a9aac1b431 78 SUPERFAMILY SSF47336 2 76 7.07E-24 T 11-11-2016 IPR009081 Phosphopantetheine binding ACP domain vm_RS04865 c5409457fcbe82eac8fe31a9aac1b431 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 11-11-2016 IPR006162 Phosphopantetheine attachment site vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 1.1E-64 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 1.1E-64 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 1.1E-64 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 135 144 1.1E-64 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 1.1E-64 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 425 445 1.1E-64 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.1E-64 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 255 269 1.1E-64 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 403 418 1.1E-64 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 SUPERFAMILY SSF55424 337 451 1.19E-34 T 11-11-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 Gene3D G3DSA:3.50.50.60 139 327 1.0E-50 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 319 1.8E-69 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 132 150 2.8E-28 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 2.8E-28 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 270 2.8E-28 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.8E-28 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 2.8E-28 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 Gene3D G3DSA:3.30.390.30 340 451 1.4E-42 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 Gene3D G3DSA:3.50.50.60 2 138 1.1E-46 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 450 7.9E-33 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 PIRSF PIRSF000350 1 445 4.5E-82 T 11-11-2016 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 TIGRFAM TIGR01421 gluta_reduc_1: glutathione-disulfide reductase 4 451 7.7E-216 T 11-11-2016 IPR006322 Glutathione reductase, eukaryote/bacterial GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081|Reactome: R-HSA-2408550|Reactome: R-HSA-3299685|Reactome: R-HSA-499943|Reactome: R-HSA-5628897 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 SUPERFAMILY SSF51905 1 361 1.68E-57 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS14620 4cf707c1726d6ec79be0c6466347ba25 451 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 11-11-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 vm_RS13055 18c438934ca88ed350663da0643f7d4a 236 SUPERFAMILY SSF51419 1 228 1.44E-81 T 11-11-2016 IPR029066 PLP-binding barrel vm_RS13055 18c438934ca88ed350663da0643f7d4a 236 PIRSF PIRSF004848 1 236 5.8E-78 T 11-11-2016 IPR011078 Uncharacterised protein family UPF0001 vm_RS13055 18c438934ca88ed350663da0643f7d4a 236 Gene3D G3DSA:3.20.20.10 2 234 4.7E-93 T 11-11-2016 IPR029066 PLP-binding barrel vm_RS13055 18c438934ca88ed350663da0643f7d4a 236 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 80 94 - T 11-11-2016 IPR011078 Uncharacterised protein family UPF0001 vm_RS13055 18c438934ca88ed350663da0643f7d4a 236 Pfam PF01168 Alanine racemase, N-terminal domain 8 230 6.3E-34 T 11-11-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS13055 18c438934ca88ed350663da0643f7d4a 236 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 230 3.7E-86 T 11-11-2016 IPR011078 Uncharacterised protein family UPF0001 vm_RS13685 9b15b06e7dfb1512bbbd46515b0e6b63 316 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 76 94 - T 11-11-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 vm_RS13685 9b15b06e7dfb1512bbbd46515b0e6b63 316 SUPERFAMILY SSF51395 1 308 2.07E-74 T 11-11-2016 vm_RS13685 9b15b06e7dfb1512bbbd46515b0e6b63 316 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 1 308 1.7E-156 T 11-11-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 vm_RS13685 9b15b06e7dfb1512bbbd46515b0e6b63 316 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 1 311 50.314 T 11-11-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 vm_RS13685 9b15b06e7dfb1512bbbd46515b0e6b63 316 Pfam PF01207 Dihydrouridine synthase (Dus) 1 305 5.8E-93 T 11-11-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 vm_RS13685 9b15b06e7dfb1512bbbd46515b0e6b63 316 PIRSF PIRSF006621 1 314 5.0E-71 T 11-11-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 vm_RS13685 9b15b06e7dfb1512bbbd46515b0e6b63 316 Gene3D G3DSA:3.20.20.70 1 235 2.9E-73 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS05145 6723eec3be14e11ca4e8d5f8c633fd9f 290 Pfam PF07466 Protein of unknown function (DUF1517) 28 128 2.5E-6 T 11-11-2016 IPR010903 Protein of unknown function DUF1517 vm_RS05145 6723eec3be14e11ca4e8d5f8c633fd9f 290 Pfam PF04280 Tim44-like domain 168 289 4.0E-14 T 11-11-2016 IPR007379 Tim44-like domain vm_RS05145 6723eec3be14e11ca4e8d5f8c633fd9f 290 SUPERFAMILY SSF54427 169 289 1.18E-15 T 11-11-2016 IPR032710 NTF2-like domain vm_RS05145 6723eec3be14e11ca4e8d5f8c633fd9f 290 SMART SM00978 159 290 6.1E-35 T 11-11-2016 IPR007379 Tim44-like domain vm_RS11960 e6d1e011e12cf299dc075eece1e9bc3e 132 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 3 115 1.3E-34 T 11-11-2016 IPR000238 Ribosome-binding factor A GO:0006364 vm_RS11960 e6d1e011e12cf299dc075eece1e9bc3e 132 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 98 1.0E-46 T 11-11-2016 IPR000238 Ribosome-binding factor A GO:0006364 vm_RS11960 e6d1e011e12cf299dc075eece1e9bc3e 132 Gene3D G3DSA:3.30.300.20 4 119 1.5E-36 T 11-11-2016 IPR015946 K homology domain-like, alpha/beta vm_RS11960 e6d1e011e12cf299dc075eece1e9bc3e 132 ProSitePatterns PS01319 Ribosome-binding factor A signature. 77 98 - T 11-11-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 vm_RS11960 e6d1e011e12cf299dc075eece1e9bc3e 132 SUPERFAMILY SSF89919 2 105 9.68E-32 T 11-11-2016 IPR023799 Ribosome-binding factor A domain vm_RS11960 e6d1e011e12cf299dc075eece1e9bc3e 132 Pfam PF02033 Ribosome-binding factor A 7 110 5.3E-30 T 11-11-2016 IPR000238 Ribosome-binding factor A GO:0006364 vm_RS11960 e6d1e011e12cf299dc075eece1e9bc3e 132 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 3 118 21.158 T 11-11-2016 IPR000238 Ribosome-binding factor A GO:0006364 vm_RS08790 7b026db8d841b92cad4b0e0f5184c738 214 Gene3D G3DSA:3.40.50.2300 2 120 2.1E-34 T 11-11-2016 vm_RS08790 7b026db8d841b92cad4b0e0f5184c738 214 SUPERFAMILY SSF52172 3 132 7.97E-34 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS08790 7b026db8d841b92cad4b0e0f5184c738 214 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS08790 7b026db8d841b92cad4b0e0f5184c738 214 SMART SM00421 146 203 5.2E-18 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS08790 7b026db8d841b92cad4b0e0f5184c738 214 SMART SM00448 2 115 1.7E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS08790 7b026db8d841b92cad4b0e0f5184c738 214 Gene3D G3DSA:1.10.10.10 121 211 2.0E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS08790 7b026db8d841b92cad4b0e0f5184c738 214 SUPERFAMILY SSF46894 135 210 3.4E-19 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS08790 7b026db8d841b92cad4b0e0f5184c738 214 Pfam PF00072 Response regulator receiver domain 4 116 5.0E-31 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS08790 7b026db8d841b92cad4b0e0f5184c738 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 203 4.0E-20 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS08790 7b026db8d841b92cad4b0e0f5184c738 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.0E-10 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS08790 7b026db8d841b92cad4b0e0f5184c738 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.0E-10 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS08790 7b026db8d841b92cad4b0e0f5184c738 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.0E-10 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 Gene3D G3DSA:3.30.230.10 5 208 2.1E-77 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 Gene3D G3DSA:3.30.70.890 209 381 4.1E-61 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 PIRSF PIRSF000530 1 384 3.4E-124 T 11-11-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 Pfam PF00288 GHMP kinases N terminal domain 115 182 1.6E-11 T 11-11-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 SUPERFAMILY SSF54211 4 203 6.53E-64 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 Pfam PF08544 GHMP kinases C terminal 280 361 2.2E-11 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 TIGRFAM TIGR00131 gal_kin: galactokinase 6 381 6.0E-148 T 11-11-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 PRINTS PR00959 Mevalonate kinase family signature 26 50 5.4E-44 T 11-11-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 PRINTS PR00959 Mevalonate kinase family signature 120 142 5.4E-44 T 11-11-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 PRINTS PR00959 Mevalonate kinase family signature 163 182 5.4E-44 T 11-11-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 PRINTS PR00959 Mevalonate kinase family signature 329 346 5.4E-44 T 11-11-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 SUPERFAMILY SSF55060 206 382 9.28E-53 T 11-11-2016 IPR013750 GHMP kinase, C-terminal domain vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 ProSitePatterns PS00106 Galactokinase signature. 28 39 - T 11-11-2016 IPR019741 Galactokinase, conserved site KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 PRINTS PR00473 Galactokinase signature 264 278 6.1E-30 T 11-11-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 PRINTS PR00473 Galactokinase signature 93 104 6.1E-30 T 11-11-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 PRINTS PR00473 Galactokinase signature 28 46 6.1E-30 T 11-11-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 PRINTS PR00473 Galactokinase signature 113 131 6.1E-30 T 11-11-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 Pfam PF10509 Galactokinase galactose-binding signature 12 59 6.9E-21 T 11-11-2016 IPR019539 Galactokinase galactose-binding domain KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 122 133 - T 11-11-2016 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 vm_RS06990 daa0f150fa13a7bd72c2415c6407184a 386 Hamap MF_00246 Galactokinase [galK]. 26 382 44.194 T 11-11-2016 IPR022963 Galactokinase, bacterial GO:0004335|GO:0006012 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527 vm_RS06515 8cc8f3a41765ff8760f15a9b92ad2b24 301 SUPERFAMILY SSF64182 1 298 7.06E-67 T 11-11-2016 vm_RS06515 8cc8f3a41765ff8760f15a9b92ad2b24 301 Pfam PF01368 DHH family 2 142 1.1E-20 T 11-11-2016 IPR001667 DDH domain vm_RS06515 8cc8f3a41765ff8760f15a9b92ad2b24 301 Gene3D G3DSA:3.90.1640.10 2 176 2.2E-54 T 11-11-2016 vm_RS06515 8cc8f3a41765ff8760f15a9b92ad2b24 301 Pfam PF02833 DHHA2 domain 180 297 1.2E-16 T 11-11-2016 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1 vm_RS06515 8cc8f3a41765ff8760f15a9b92ad2b24 301 SMART SM01131 178 300 4.4E-35 T 11-11-2016 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 428 1.3E-172 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 109 1.0E-28 T 11-11-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 433 39.98 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 PRINTS PR00981 Seryl-tRNA synthetase signature 327 340 2.0E-33 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 PRINTS PR00981 Seryl-tRNA synthetase signature 344 360 2.0E-33 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 PRINTS PR00981 Seryl-tRNA synthetase signature 275 287 2.0E-33 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 PRINTS PR00981 Seryl-tRNA synthetase signature 287 300 2.0E-33 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 PRINTS PR00981 Seryl-tRNA synthetase signature 362 378 2.0E-33 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 230 411 5.7E-34 T 11-11-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 SUPERFAMILY SSF55681 118 431 1.94E-97 T 11-11-2016 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 SUPERFAMILY SSF46589 1 114 5.75E-26 T 11-11-2016 IPR010978 tRNA-binding arm GO:0000166 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 PIRSF PIRSF001529 1 435 3.4E-190 T 11-11-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 Gene3D G3DSA:1.10.287.40 1 106 1.0E-22 T 11-11-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 vm_RS09305 8d37a7a013cd5e748a62da476398058a 435 Gene3D G3DSA:3.30.930.10 107 431 6.8E-139 T 11-11-2016 vm_RS05610 99381185e9de611d1d279d7e08200aaf 429 SUPERFAMILY SSF51905 3 219 4.75E-27 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS05610 99381185e9de611d1d279d7e08200aaf 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 111 129 2.7E-12 T 11-11-2016 vm_RS05610 99381185e9de611d1d279d7e08200aaf 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 2.7E-12 T 11-11-2016 vm_RS05610 99381185e9de611d1d279d7e08200aaf 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 167 185 2.7E-12 T 11-11-2016 vm_RS05610 99381185e9de611d1d279d7e08200aaf 429 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 2.7E-12 T 11-11-2016 vm_RS05610 99381185e9de611d1d279d7e08200aaf 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 4.0E-6 T 11-11-2016 vm_RS05610 99381185e9de611d1d279d7e08200aaf 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 167 192 4.0E-6 T 11-11-2016 vm_RS05610 99381185e9de611d1d279d7e08200aaf 429 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 4.0E-6 T 11-11-2016 vm_RS05610 99381185e9de611d1d279d7e08200aaf 429 SUPERFAMILY SSF51905 165 346 2.36E-25 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS05610 99381185e9de611d1d279d7e08200aaf 429 Gene3D G3DSA:3.50.50.60 3 179 3.8E-21 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS05610 99381185e9de611d1d279d7e08200aaf 429 Gene3D G3DSA:3.50.50.60 180 342 2.6E-27 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS05610 99381185e9de611d1d279d7e08200aaf 429 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 333 1.2E-63 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02285 b5f27cdab20304b18d090ddf81c59e76 95 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 3.4E-32 T 11-11-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 vm_RS02285 b5f27cdab20304b18d090ddf81c59e76 95 Gene3D G3DSA:3.30.160.100 1 95 1.6E-36 T 11-11-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 vm_RS02285 b5f27cdab20304b18d090ddf81c59e76 95 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 2.3E-27 T 11-11-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 vm_RS02285 b5f27cdab20304b18d090ddf81c59e76 95 SUPERFAMILY SSF69754 1 95 3.27E-34 T 11-11-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 vm_RS01125 660b9e0f7e41e899dc875a21e25f08bc 535 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 16 344 8.2E-85 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 vm_RS01125 660b9e0f7e41e899dc875a21e25f08bc 535 Gene3D G3DSA:3.20.20.300 21 347 2.3E-87 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 vm_RS01125 660b9e0f7e41e899dc875a21e25f08bc 535 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 254 271 - T 11-11-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 vm_RS01125 660b9e0f7e41e899dc875a21e25f08bc 535 SUPERFAMILY SSF51445 5 370 4.74E-80 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS08680 89bc088f1b14ae51a98bb42cae23076b 149 Pfam PF01641 SelR domain 28 143 1.1E-47 T 11-11-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 vm_RS08680 89bc088f1b14ae51a98bb42cae23076b 149 SUPERFAMILY SSF51316 23 145 9.94E-53 T 11-11-2016 IPR011057 Mss4-like vm_RS08680 89bc088f1b14ae51a98bb42cae23076b 149 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 24 143 3.3E-51 T 11-11-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 vm_RS08680 89bc088f1b14ae51a98bb42cae23076b 149 Gene3D G3DSA:2.170.150.20 20 144 4.4E-54 T 11-11-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 TIGRFAM TIGR00838 argH: argininosuccinate lyase 3 456 2.0E-202 T 11-11-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 SUPERFAMILY SSF48557 3 455 4.71E-141 T 11-11-2016 IPR008948 L-Aspartase-like GO:0003824 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 Pfam PF14698 Argininosuccinate lyase C-terminal 364 431 2.8E-24 T 11-11-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 Pfam PF00206 Lyase 6 301 7.4E-92 T 11-11-2016 IPR022761 Fumarate lyase, N-terminal vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 Gene3D G3DSA:1.10.275.10 1 107 5.2E-37 T 11-11-2016 IPR024083 Fumarase/histidase, N-terminal vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 PRINTS PR00145 Argininosuccinate lyase family signature 311 330 1.4E-67 T 11-11-2016 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 PRINTS PR00145 Argininosuccinate lyase family signature 143 163 1.4E-67 T 11-11-2016 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 PRINTS PR00145 Argininosuccinate lyase family signature 232 256 1.4E-67 T 11-11-2016 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 PRINTS PR00145 Argininosuccinate lyase family signature 194 210 1.4E-67 T 11-11-2016 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 PRINTS PR00145 Argininosuccinate lyase family signature 102 124 1.4E-67 T 11-11-2016 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 PRINTS PR00145 Argininosuccinate lyase family signature 276 292 1.4E-67 T 11-11-2016 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 Hamap MF_00006 Argininosuccinate lyase [argH]. 2 454 40.203 T 11-11-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 Gene3D G3DSA:1.20.200.10 108 374 9.3E-102 T 11-11-2016 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 PRINTS PR00149 Fumarate lyase superfamily signature 276 292 2.2E-28 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 PRINTS PR00149 Fumarate lyase superfamily signature 232 259 2.2E-28 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 PRINTS PR00149 Fumarate lyase superfamily signature 103 121 2.2E-28 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 PRINTS PR00149 Fumarate lyase superfamily signature 148 166 2.2E-28 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 Gene3D G3DSA:1.10.40.30 375 432 1.4E-30 T 11-11-2016 vm_RS01735 365531ac0ee562b6a75d412dce09a310 458 ProSitePatterns PS00163 Fumarate lyases signature. 276 285 - T 11-11-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 vm_RS14320 bf42479efb2fda147327cb04faf63e99 608 SUPERFAMILY SSF52402 288 434 8.63E-11 T 11-11-2016 vm_RS14320 bf42479efb2fda147327cb04faf63e99 608 SUPERFAMILY SSF56235 2 206 1.29E-27 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS14320 bf42479efb2fda147327cb04faf63e99 608 Pfam PF13522 Glutamine amidotransferase domain 60 184 2.3E-13 T 11-11-2016 vm_RS14320 bf42479efb2fda147327cb04faf63e99 608 Gene3D G3DSA:3.40.50.620 305 389 4.1E-5 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS14320 bf42479efb2fda147327cb04faf63e99 608 Gene3D G3DSA:3.60.20.10 2 192 7.7E-34 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS14320 bf42479efb2fda147327cb04faf63e99 608 Gene3D G3DSA:3.60.20.10 249 274 7.7E-34 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS08020 36eae3d1919d97ebbf0612a3acdaa235 310 Pfam PF10414 Sirohaem synthase dimerisation region 151 205 3.2E-11 T 11-11-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 vm_RS08020 36eae3d1919d97ebbf0612a3acdaa235 310 Pfam PF13241 Putative NAD(P)-binding 6 116 8.6E-31 T 11-11-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 vm_RS08020 36eae3d1919d97ebbf0612a3acdaa235 310 Gene3D G3DSA:3.30.160.110 114 148 1.4E-15 T 11-11-2016 vm_RS08020 36eae3d1919d97ebbf0612a3acdaa235 310 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 195 1.3E-58 T 11-11-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 vm_RS08020 36eae3d1919d97ebbf0612a3acdaa235 310 Gene3D G3DSA:3.40.1010.10 224 293 1.7E-4 T 11-11-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 vm_RS08020 36eae3d1919d97ebbf0612a3acdaa235 310 SUPERFAMILY SSF51735 1 113 4.86E-27 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS08020 36eae3d1919d97ebbf0612a3acdaa235 310 Gene3D G3DSA:1.10.8.210 150 209 7.4E-18 T 11-11-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 vm_RS08020 36eae3d1919d97ebbf0612a3acdaa235 310 SUPERFAMILY SSF53790 224 296 3.78E-5 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 vm_RS08020 36eae3d1919d97ebbf0612a3acdaa235 310 SUPERFAMILY SSF75615 115 198 6.02E-22 T 11-11-2016 vm_RS08020 36eae3d1919d97ebbf0612a3acdaa235 310 Gene3D G3DSA:3.40.50.720 1 113 1.6E-40 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 Gene3D G3DSA:3.30.230.10 5 152 2.3E-27 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 391 1.9E-90 T 11-11-2016 IPR000523 Magnesium chelatase ChlI domain vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 SUPERFAMILY SSF54211 2 169 7.21E-31 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 Gene3D G3DSA:3.40.50.300 189 386 2.5E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 SUPERFAMILY SSF52540 189 500 1.47E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 1.0E-47 T 11-11-2016 vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 493 3.9E-213 T 11-11-2016 IPR004482 Mg chelatase-related protein vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 401 493 8.0E-31 T 11-11-2016 IPR025158 Mg chelatase-related protein, C-terminal domain vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 SMART SM00382 210 390 1.6E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 289 303 3.2E-6 T 11-11-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 341 353 3.2E-6 T 11-11-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 317 330 3.2E-6 T 11-11-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 vm_RS00110 55f95659f9b5c79dd09958b6a0c84080 507 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 3.2E-6 T 11-11-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 Pfam PF00990 Diguanylate cyclase, GGDEF domain 478 629 2.6E-19 T 11-11-2016 IPR000160 GGDEF domain vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 476 633 1.3E-19 T 11-11-2016 IPR000160 GGDEF domain vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 Pfam PF13424 Tetratricopeptide repeat 175 239 7.5E-8 T 11-11-2016 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 Gene3D G3DSA:1.25.40.10 137 397 5.5E-30 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 SMART SM00028 369 402 69.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 SMART SM00028 249 282 4.1 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 SMART SM00028 329 362 0.39 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 SMART SM00028 172 205 28.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 SMART SM00028 289 322 22.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 SMART SM00028 209 242 12.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 Pfam PF13181 Tetratricopeptide repeat 331 360 0.0038 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 SUPERFAMILY SSF48452 288 398 2.83E-13 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 SUPERFAMILY SSF48452 175 324 2.18E-20 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 Gene3D G3DSA:3.30.70.270 479 633 1.5E-23 T 11-11-2016 vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 SMART SM00267 465 635 1.9E-13 T 11-11-2016 IPR000160 GGDEF domain vm_RS08000 11a4e64ef7f8385badf783a5da456296 647 SUPERFAMILY SSF55073 483 633 3.53E-22 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS11700 7a34805942511afd07398b4d4026b579 375 Pfam PF01817 Chorismate mutase type II 9 87 1.1E-20 T 11-11-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 vm_RS11700 7a34805942511afd07398b4d4026b579 375 SUPERFAMILY SSF48600 4 88 1.76E-23 T 11-11-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 vm_RS11700 7a34805942511afd07398b4d4026b579 375 TIGRFAM TIGR01799 CM_T: chorismate mutase 5 87 1.9E-41 T 11-11-2016 IPR011277 Chorismate mutase, T-protein GO:0004106|GO:0005737|GO:0006571|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 vm_RS11700 7a34805942511afd07398b4d4026b579 375 SUPERFAMILY SSF51735 91 237 1.97E-37 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS11700 7a34805942511afd07398b4d4026b579 375 Gene3D G3DSA:1.20.59.10 4 83 9.4E-23 T 11-11-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 vm_RS11700 7a34805942511afd07398b4d4026b579 375 SUPERFAMILY SSF48179 241 366 1.59E-41 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 vm_RS11700 7a34805942511afd07398b4d4026b579 375 Gene3D G3DSA:3.40.50.720 84 247 6.1E-47 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS11700 7a34805942511afd07398b4d4026b579 375 PIRSF PIRSF001499 1 374 3.0E-176 T 11-11-2016 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein GO:0004106|GO:0005737|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+5.4.99.5+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7303|MetaCyc: PWY-7626 vm_RS11700 7a34805942511afd07398b4d4026b579 375 Pfam PF02153 Prephenate dehydrogenase 134 343 7.3E-33 T 11-11-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 vm_RS11700 7a34805942511afd07398b4d4026b579 375 SMART SM00830 9 89 5.9E-29 T 11-11-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 vm_RS11700 7a34805942511afd07398b4d4026b579 375 Gene3D G3DSA:1.10.3660.10 249 373 2.6E-54 T 11-11-2016 vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 Pfam PF00285 Citrate synthase, C-terminal domain 49 411 3.1E-136 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 PIRSF PIRSF001369 38 429 1.3E-173 T 11-11-2016 IPR024176 Citrate synthase, bacterial-type vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 Gene3D G3DSA:1.10.230.10 281 373 2.0E-44 T 11-11-2016 IPR016143 Citrate synthase-like, small alpha subdomain Reactome: R-HSA-163765|Reactome: R-HSA-75105 vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 PRINTS PR00143 Citrate synthase signature 241 269 3.6E-55 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 PRINTS PR00143 Citrate synthase signature 296 316 3.6E-55 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 PRINTS PR00143 Citrate synthase signature 219 234 3.6E-55 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 PRINTS PR00143 Citrate synthase signature 359 375 3.6E-55 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 PRINTS PR00143 Citrate synthase signature 165 178 3.6E-55 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 PRINTS PR00143 Citrate synthase signature 379 393 3.6E-55 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 Gene3D G3DSA:1.10.580.10 52 280 1.0E-99 T 11-11-2016 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 SUPERFAMILY SSF48256 4 428 8.9E-171 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 11-11-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 vm_RS04480 c1e8512d878e6127be542cc2f60bf9fc 429 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 15 422 3.6E-239 T 11-11-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 vm_RS00375 7bd661eef2c88a6c42c49ce018047e17 107 Pfam PF10625 Universal stress protein B (UspB) 1 106 2.7E-50 T 11-11-2016 IPR019598 Universal stress protein B vm_RS00375 7bd661eef2c88a6c42c49ce018047e17 107 Hamap MF_01088 Universal stress protein B [uspB]. 1 107 34.736 T 11-11-2016 IPR019598 Universal stress protein B vm_RS04135 a474f9395785cd91d896128201bc16b4 152 SUPERFAMILY SSF52172 4 121 2.56E-8 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS04135 a474f9395785cd91d896128201bc16b4 152 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 35 149 2.0E-13 T 11-11-2016 vm_RS04135 a474f9395785cd91d896128201bc16b4 152 Pfam PF00072 Response regulator receiver domain 7 111 1.0E-5 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS04135 a474f9395785cd91d896128201bc16b4 152 Gene3D G3DSA:3.40.50.2300 4 106 2.6E-11 T 11-11-2016 vm_RS09520 c134505e5d422723b1c478b67291c7be 435 TIGRFAM TIGR02810 agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 6 424 7.9E-206 T 11-11-2016 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 vm_RS09520 c134505e5d422723b1c478b67291c7be 435 Gene3D G3DSA:3.20.20.70 6 295 1.0E-135 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS09520 c134505e5d422723b1c478b67291c7be 435 SUPERFAMILY SSF51569 4 424 1.26E-160 T 11-11-2016 vm_RS09520 c134505e5d422723b1c478b67291c7be 435 Pfam PF08013 Tagatose 6 phosphate kinase 4 424 4.4E-191 T 11-11-2016 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 vm_RS09520 c134505e5d422723b1c478b67291c7be 435 PIRSF PIRSF009264 1 430 1.9E-198 T 11-11-2016 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ GO:0019402 vm_RS09520 c134505e5d422723b1c478b67291c7be 435 Gene3D G3DSA:1.10.400.20 296 411 3.7E-49 T 11-11-2016 vm_RS13415 1882faaa2062c8e565d39ba9feadd34a 481 Pfam PF01523 Putative modulator of DNA gyrase 35 332 1.7E-62 T 11-11-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 vm_RS13415 1882faaa2062c8e565d39ba9feadd34a 481 SUPERFAMILY SSF111283 19 480 1.06E-129 T 11-11-2016 vm_RS13415 1882faaa2062c8e565d39ba9feadd34a 481 PIRSF PIRSF004919 15 481 7.5E-144 T 11-11-2016 IPR025502 TldD vm_RS07775 bae715a0a6ead7631ff2901ece33e14a 267 SUPERFAMILY SSF56529 2 267 1.57E-75 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 vm_RS07775 bae715a0a6ead7631ff2901ece33e14a 267 Gene3D G3DSA:3.90.850.10 1 267 3.8E-85 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 vm_RS07775 bae715a0a6ead7631ff2901ece33e14a 267 TIGRFAM TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1 267 2.7E-141 T 11-11-2016 IPR012690 2-oxo-hepta-3-ene-1,7-dioic acid hydratase GO:0019439 vm_RS10330 533ffcb307c49d09a878d35b375b52b1 154 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 39 144 1.4E-38 T 11-11-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 vm_RS10330 533ffcb307c49d09a878d35b375b52b1 154 Gene3D G3DSA:3.40.390.30 13 152 6.5E-51 T 11-11-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 vm_RS10330 533ffcb307c49d09a878d35b375b52b1 154 Pfam PF02130 Uncharacterized protein family UPF0054 20 142 3.4E-39 T 11-11-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 vm_RS10330 533ffcb307c49d09a878d35b375b52b1 154 SUPERFAMILY SSF55486 5 149 5.62E-49 T 11-11-2016 vm_RS10330 533ffcb307c49d09a878d35b375b52b1 154 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 4 147 24.576 T 11-11-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 vm_RS10330 533ffcb307c49d09a878d35b375b52b1 154 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 113 123 - T 11-11-2016 IPR020549 Endoribonuclease YbeY, conserved site vm_RS09685 d48e8efc7744afae4b7ed58cf8e637e5 134 SMART SM01022 5 99 1.2E-4 T 11-11-2016 IPR007374 ASCH domain vm_RS09685 d48e8efc7744afae4b7ed58cf8e637e5 134 Gene3D G3DSA:2.30.130.30 3 118 8.2E-15 T 11-11-2016 vm_RS09685 d48e8efc7744afae4b7ed58cf8e637e5 134 SUPERFAMILY SSF88697 1 123 4.85E-24 T 11-11-2016 IPR015947 PUA-like domain vm_RS09685 d48e8efc7744afae4b7ed58cf8e637e5 134 Pfam PF04266 ASCH domain 5 85 1.7E-5 T 11-11-2016 IPR007374 ASCH domain vm_RS05980 f8459303bfdd7ecc4bc180a9d63c4b79 909 Gene3D G3DSA:2.70.98.10 49 373 1.4E-89 T 11-11-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 vm_RS05980 f8459303bfdd7ecc4bc180a9d63c4b79 909 Gene3D G3DSA:1.20.1610.10 544 742 3.0E-41 T 11-11-2016 vm_RS05980 f8459303bfdd7ecc4bc180a9d63c4b79 909 Gene3D G3DSA:3.30.2080.10 743 887 1.4E-61 T 11-11-2016 vm_RS05980 f8459303bfdd7ecc4bc180a9d63c4b79 909 Pfam PF07971 Glycosyl hydrolase family 92 286 876 3.4E-119 T 11-11-2016 IPR012939 Glycosyl hydrolase family 92 vm_RS05980 f8459303bfdd7ecc4bc180a9d63c4b79 909 Gene3D G3DSA:1.20.1050.60 425 536 7.6E-21 T 11-11-2016 vm_RS05980 f8459303bfdd7ecc4bc180a9d63c4b79 909 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 407 879 6.9E-96 T 11-11-2016 IPR005887 Alpha-1,2-mannosidase, putative vm_RS05980 f8459303bfdd7ecc4bc180a9d63c4b79 909 SUPERFAMILY SSF48208 319 871 3.23E-9 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 vm_RS02460 40e6b6b4403b59f942803432d93fed30 417 Pfam PF01966 HD domain 170 290 3.0E-16 T 11-11-2016 IPR006674 HD domain vm_RS02460 40e6b6b4403b59f942803432d93fed30 417 Gene3D G3DSA:1.10.3210.10 166 319 4.4E-20 T 11-11-2016 IPR006674 HD domain vm_RS02460 40e6b6b4403b59f942803432d93fed30 417 TIGRFAM TIGR00277 HDIG: HDIG domain 166 259 9.9E-8 T 11-11-2016 IPR006675 HDIG domain vm_RS02460 40e6b6b4403b59f942803432d93fed30 417 Pfam PF11871 Domain of unknown function (DUF3391) 4 136 8.8E-34 T 11-11-2016 IPR021812 Protein of unknown function DUF3391 vm_RS02460 40e6b6b4403b59f942803432d93fed30 417 SMART SM00471 164 300 3.3E-9 T 11-11-2016 IPR003607 HD/PDEase domain vm_RS02460 40e6b6b4403b59f942803432d93fed30 417 SUPERFAMILY SSF109604 163 329 2.15E-26 T 11-11-2016 vm_RS08980 a069d38c811fba801dc75d3aea251711 201 Pfam PF00117 Glutamine amidotransferase class-I 6 186 3.7E-43 T 11-11-2016 IPR017926 Glutamine amidotransferase vm_RS08980 a069d38c811fba801dc75d3aea251711 201 SUPERFAMILY SSF52317 2 192 6.88E-47 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS08980 a069d38c811fba801dc75d3aea251711 201 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 4 187 2.2E-52 T 11-11-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS08980 a069d38c811fba801dc75d3aea251711 201 Gene3D G3DSA:3.40.50.880 3 190 4.5E-54 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS08980 a069d38c811fba801dc75d3aea251711 201 PRINTS PR00097 Anthranilate synthase component II signature 52 61 3.1E-34 T 11-11-2016 vm_RS08980 a069d38c811fba801dc75d3aea251711 201 PRINTS PR00097 Anthranilate synthase component II signature 79 90 3.1E-34 T 11-11-2016 vm_RS08980 a069d38c811fba801dc75d3aea251711 201 PRINTS PR00097 Anthranilate synthase component II signature 4 18 3.1E-34 T 11-11-2016 vm_RS08980 a069d38c811fba801dc75d3aea251711 201 PRINTS PR00097 Anthranilate synthase component II signature 104 112 3.1E-34 T 11-11-2016 vm_RS08980 a069d38c811fba801dc75d3aea251711 201 PRINTS PR00097 Anthranilate synthase component II signature 124 136 3.1E-34 T 11-11-2016 vm_RS08980 a069d38c811fba801dc75d3aea251711 201 PRINTS PR00097 Anthranilate synthase component II signature 166 179 3.1E-34 T 11-11-2016 vm_RS08980 a069d38c811fba801dc75d3aea251711 201 PRINTS PR00096 Glutamine amidotransferase superfamily signature 52 61 1.3E-13 T 11-11-2016 vm_RS08980 a069d38c811fba801dc75d3aea251711 201 PRINTS PR00096 Glutamine amidotransferase superfamily signature 79 90 1.3E-13 T 11-11-2016 vm_RS08980 a069d38c811fba801dc75d3aea251711 201 PRINTS PR00096 Glutamine amidotransferase superfamily signature 166 179 1.3E-13 T 11-11-2016 vm_RS08980 a069d38c811fba801dc75d3aea251711 201 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 49 63 7.1E-6 T 11-11-2016 vm_RS08980 a069d38c811fba801dc75d3aea251711 201 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 79 95 7.1E-6 T 11-11-2016 vm_RS14690 7e7b44b65a2b53e5ed3088b6b5990eec 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 1.9E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS14690 7e7b44b65a2b53e5ed3088b6b5990eec 190 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 1.9E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS14690 7e7b44b65a2b53e5ed3088b6b5990eec 190 SUPERFAMILY SSF46689 6 81 3.99E-17 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS14690 7e7b44b65a2b53e5ed3088b6b5990eec 190 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 53 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site vm_RS14690 7e7b44b65a2b53e5ed3088b6b5990eec 190 Gene3D G3DSA:1.10.357.10 6 187 1.9E-33 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 vm_RS14690 7e7b44b65a2b53e5ed3088b6b5990eec 190 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 2.3E-15 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS03530 2343cbc71efd56ffbfa55ad1dab3fdc1 415 Gene3D G3DSA:3.40.50.1820 171 411 2.0E-20 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS03530 2343cbc71efd56ffbfa55ad1dab3fdc1 415 Pfam PF06500 Alpha/beta hydrolase of unknown function (DUF1100) 5 414 1.5E-232 T 11-11-2016 IPR010520 UPF0255 family vm_RS03530 2343cbc71efd56ffbfa55ad1dab3fdc1 415 Hamap MF_01063 Esterase FrsA [frsA]. 4 415 55.848 T 11-11-2016 IPR010520 UPF0255 family vm_RS03530 2343cbc71efd56ffbfa55ad1dab3fdc1 415 SUPERFAMILY SSF53474 47 411 8.03E-45 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Pfam PF16184 Cadherin-like 268 373 6.5E-7 T 11-11-2016 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 1194 1271 3.4E-11 T 11-11-2016 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1144 1162 - T 11-11-2016 IPR018511 Hemolysin-type calcium-binding conserved site vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 SUPERFAMILY SSF51120 465 587 6.8E-8 T 11-11-2016 IPR011049 Serralysin-like metalloprotease, C-terminal vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Pfam PF08548 Peptidase M10 serralysin C terminal 1165 1231 9.3E-7 T 11-11-2016 IPR013858 Peptidase M10 serralysin, C-terminal GO:0005509|GO:0005615 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 PRINTS PR00313 NodO calcium binding signature 1148 1156 4.9E-10 T 11-11-2016 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 PRINTS PR00313 NodO calcium binding signature 1175 1184 4.9E-10 T 11-11-2016 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 PRINTS PR00313 NodO calcium binding signature 1121 1129 4.9E-10 T 11-11-2016 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 PRINTS PR00313 NodO calcium binding signature 1050 1061 4.9E-10 T 11-11-2016 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 SUPERFAMILY SSF51120 1100 1223 1.44E-27 T 11-11-2016 IPR011049 Serralysin-like metalloprotease, C-terminal vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1135 1153 - T 11-11-2016 IPR018511 Hemolysin-type calcium-binding conserved site vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1147 1164 0.044 T 11-11-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1165 1181 0.035 T 11-11-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 523 535 0.39 T 11-11-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1129 1146 1.2 T 11-11-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 537 552 2.9 T 11-11-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1053 1063 1.4 T 11-11-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 1116 1128 1.5 T 11-11-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 SUPERFAMILY SSF53300 981 1017 9.46E-16 T 11-11-2016 IPR002035 von Willebrand factor, type A vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 SUPERFAMILY SSF53300 734 884 9.46E-16 T 11-11-2016 IPR002035 von Willebrand factor, type A vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1126 1144 - T 11-11-2016 IPR018511 Hemolysin-type calcium-binding conserved site vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 533 551 - T 11-11-2016 IPR018511 Hemolysin-type calcium-binding conserved site vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Gene3D G3DSA:3.40.50.410 988 1022 3.4E-13 T 11-11-2016 IPR002035 von Willebrand factor, type A vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Gene3D G3DSA:3.40.50.410 762 889 3.4E-13 T 11-11-2016 IPR002035 von Willebrand factor, type A vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 1162 1180 - T 11-11-2016 IPR018511 Hemolysin-type calcium-binding conserved site vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Gene3D G3DSA:2.150.10.10 1044 1061 2.3E-23 T 11-11-2016 IPR011049 Serralysin-like metalloprotease, C-terminal vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Gene3D G3DSA:2.150.10.10 587 601 2.3E-23 T 11-11-2016 IPR011049 Serralysin-like metalloprotease, C-terminal vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Gene3D G3DSA:2.150.10.10 1121 1253 2.3E-23 T 11-11-2016 IPR011049 Serralysin-like metalloprotease, C-terminal vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Gene3D G3DSA:2.150.10.10 505 554 2.3E-23 T 11-11-2016 IPR011049 Serralysin-like metalloprotease, C-terminal vm_RS06850 11cc74ec5cc1ad11c768d7ba0ca0eb15 1274 Pfam PF00092 von Willebrand factor type A domain 765 885 4.6E-9 T 11-11-2016 IPR002035 von Willebrand factor, type A vm_RS11440 f27f2deb212c13c4e11e539289b80ff6 173 SUPERFAMILY SSF46785 2 131 2.12E-35 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11440 f27f2deb212c13c4e11e539289b80ff6 173 Gene3D G3DSA:1.10.10.10 1 133 7.1E-31 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11440 f27f2deb212c13c4e11e539289b80ff6 173 Hamap MF_01176 HTH-type transcriptional regulator IscR [iscR]. 1 173 49.451 T 11-11-2016 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 vm_RS11440 f27f2deb212c13c4e11e539289b80ff6 173 Pfam PF02082 Transcriptional regulator 1 83 4.7E-27 T 11-11-2016 IPR000944 Transcription regulator Rrf2-type vm_RS11440 f27f2deb212c13c4e11e539289b80ff6 173 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 11-11-2016 IPR030489 Transcription regulator Rrf2-type, conserved site vm_RS11440 f27f2deb212c13c4e11e539289b80ff6 173 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 5.5E-65 T 11-11-2016 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 vm_RS11440 f27f2deb212c13c4e11e539289b80ff6 173 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 1.4E-46 T 11-11-2016 IPR000944 Transcription regulator Rrf2-type vm_RS00120 cbca8b22e1e67b0dc0b3d50efc4fbe8e 201 ProSitePatterns PS00194 Thioredoxin family active site. 41 59 - T 11-11-2016 IPR017937 Thioredoxin, conserved site GO:0045454 vm_RS00120 cbca8b22e1e67b0dc0b3d50efc4fbe8e 201 Pfam PF01323 DSBA-like thioredoxin domain 41 187 1.1E-29 T 11-11-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 Reactome: R-HSA-156590 vm_RS00120 cbca8b22e1e67b0dc0b3d50efc4fbe8e 201 SUPERFAMILY SSF52833 20 197 8.2E-45 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS00120 cbca8b22e1e67b0dc0b3d50efc4fbe8e 201 PIRSF PIRSF001488 1 200 6.0E-76 T 11-11-2016 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL vm_RS00120 cbca8b22e1e67b0dc0b3d50efc4fbe8e 201 Gene3D G3DSA:3.40.30.10 119 198 1.3E-23 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS00120 cbca8b22e1e67b0dc0b3d50efc4fbe8e 201 Gene3D G3DSA:3.40.30.10 1 116 8.7E-40 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS12945 630662e40d351dd861199363703e33eb 231 Pfam PF04402 Protein of unknown function (DUF541) 28 227 1.0E-39 T 11-11-2016 IPR007497 Protein of unknown function DUF541 vm_RS07800 492fcb73b536a40b77b1502f5d93b202 168 TIGRFAM TIGR02296 HpaC: 4-hydroxyphenylacetate 3-monooxygenase, reductase component 7 158 7.6E-78 T 11-11-2016 IPR011982 4-hydroxyphenylacetate 3-monooxygenase, reductase component GO:0016651|GO:0042537|GO:0051287|GO:0055114 vm_RS07800 492fcb73b536a40b77b1502f5d93b202 168 SMART SM00903 11 157 4.4E-48 T 11-11-2016 IPR002563 Flavin reductase like domain GO:0010181 vm_RS07800 492fcb73b536a40b77b1502f5d93b202 168 SUPERFAMILY SSF50475 6 158 6.67E-44 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 vm_RS07800 492fcb73b536a40b77b1502f5d93b202 168 Gene3D G3DSA:2.30.110.10 3 156 7.7E-46 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 vm_RS07800 492fcb73b536a40b77b1502f5d93b202 168 Pfam PF01613 Flavin reductase like domain 11 158 4.2E-26 T 11-11-2016 IPR002563 Flavin reductase like domain GO:0010181 vm_RS04525 9fa483a0adf4548f2edc0e63f5739382 260 Pfam PF00950 ABC 3 transport family 1 255 1.5E-73 T 11-11-2016 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 vm_RS04525 9fa483a0adf4548f2edc0e63f5739382 260 Gene3D G3DSA:1.10.3470.10 53 240 2.9E-8 T 11-11-2016 IPR029022 ABC transporter, BtuC-like vm_RS04525 9fa483a0adf4548f2edc0e63f5739382 260 SUPERFAMILY SSF81345 2 257 1.7E-38 T 11-11-2016 IPR029022 ABC transporter, BtuC-like vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 5 277 8.0E-123 T 11-11-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 SUPERFAMILY SSF55021 4 55 6.66E-9 T 11-11-2016 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 PIRSF PIRSF036480 1 277 5.2E-111 T 11-11-2016 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 Gene3D G3DSA:3.30.70.260 3 68 1.6E-11 T 11-11-2016 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 Pfam PF01842 ACT domain 5 64 7.0E-8 T 11-11-2016 IPR002912 ACT domain GO:0008152|GO:0016597 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 Gene3D G3DSA:3.40.50.170 82 275 4.7E-57 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 SUPERFAMILY SSF53328 82 276 1.22E-59 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 277 45.165 T 11-11-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 229 251 6.8E-66 T 11-11-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 83 105 6.8E-66 T 11-11-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 6.8E-66 T 11-11-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 6.8E-66 T 11-11-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 251 276 6.8E-66 T 11-11-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 105 132 6.8E-66 T 11-11-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS05015 e59f291a1f3f42ca53e9c37d4425d625 277 Pfam PF00551 Formyl transferase 82 259 4.0E-49 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS06345 0e7572e5cafb57c2f15c673e5d60c74c 234 Pfam PF00072 Response regulator receiver domain 5 113 3.3E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06345 0e7572e5cafb57c2f15c673e5d60c74c 234 SMART SM00862 155 231 1.1E-19 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS06345 0e7572e5cafb57c2f15c673e5d60c74c 234 Gene3D G3DSA:3.40.50.2300 3 125 1.8E-35 T 11-11-2016 vm_RS06345 0e7572e5cafb57c2f15c673e5d60c74c 234 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 2.0E-20 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS06345 0e7572e5cafb57c2f15c673e5d60c74c 234 Gene3D G3DSA:1.10.10.10 132 232 4.6E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS06345 0e7572e5cafb57c2f15c673e5d60c74c 234 SUPERFAMILY SSF52172 3 183 5.89E-36 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS06345 0e7572e5cafb57c2f15c673e5d60c74c 234 SMART SM00448 3 113 2.2E-36 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS10070 6778ebb172fa5ea9d96e1067f12a0783 867 Pfam PF13375 RnfC Barrel sandwich hybrid domain 14 116 1.5E-34 T 11-11-2016 IPR026902 RnfC Barrel sandwich hybrid domain vm_RS10070 6778ebb172fa5ea9d96e1067f12a0783 867 SUPERFAMILY SSF46548 336 446 6.1E-21 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 vm_RS10070 6778ebb172fa5ea9d96e1067f12a0783 867 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 378 389 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS10070 6778ebb172fa5ea9d96e1067f12a0783 867 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 417 428 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS10070 6778ebb172fa5ea9d96e1067f12a0783 867 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 140 283 1.6E-48 T 11-11-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS10070 6778ebb172fa5ea9d96e1067f12a0783 867 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 13 447 1.0E-198 T 11-11-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 vm_RS10070 6778ebb172fa5ea9d96e1067f12a0783 867 Gene3D G3DSA:1.10.1060.10 367 448 7.9E-18 T 11-11-2016 vm_RS10070 6778ebb172fa5ea9d96e1067f12a0783 867 Pfam PF12838 4Fe-4S dicluster domain 377 431 2.5E-8 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain vm_RS10070 6778ebb172fa5ea9d96e1067f12a0783 867 SUPERFAMILY SSF142019 95 302 1.96E-60 T 11-11-2016 vm_RS10070 6778ebb172fa5ea9d96e1067f12a0783 867 Pfam PF10531 SLBB domain 296 345 3.6E-9 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS10070 6778ebb172fa5ea9d96e1067f12a0783 867 Hamap MF_00461 Electron transport complex subunit RsxC [rsxC]. 1 785 249.191 T 11-11-2016 IPR010208 Electron transport complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 Gene3D G3DSA:2.40.30.10 242 357 4.9E-20 T 11-11-2016 vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 SUPERFAMILY SSF50447 242 324 6.03E-24 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 82 97 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 Gene3D G3DSA:3.40.50.300 19 234 6.0E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 PRINTS PR00315 GTP-binding elongation factor signature 125 136 1.1E-12 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 PRINTS PR00315 GTP-binding elongation factor signature 162 171 1.1E-12 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 PRINTS PR00315 GTP-binding elongation factor signature 89 97 1.1E-12 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 PRINTS PR00315 GTP-binding elongation factor signature 109 119 1.1E-12 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 PRINTS PR00315 GTP-binding elongation factor signature 28 41 1.1E-12 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 SUPERFAMILY SSF52540 19 236 3.84E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 27 433 6.5E-196 T 11-11-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 33 213 1.4E-13 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 SUPERFAMILY SSF50465 333 434 1.92E-28 T 11-11-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 Pfam PF00009 Elongation factor Tu GTP binding domain 26 226 7.9E-44 T 11-11-2016 vm_RS02140 4e4063843ada24b13bbc2541990de9a0 476 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 18 474 54.052 T 11-11-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 vm_RS05135 d48c5052016a6d472dffe792dddc4517 623 Gene3D G3DSA:1.20.1250.20 21 188 2.1E-5 T 11-11-2016 vm_RS05135 d48c5052016a6d472dffe792dddc4517 623 SUPERFAMILY SSF69593 404 568 5.49E-29 T 11-11-2016 vm_RS05135 d48c5052016a6d472dffe792dddc4517 623 Gene3D G3DSA:3.40.1130.10 446 566 2.7E-16 T 11-11-2016 vm_RS05135 d48c5052016a6d472dffe792dddc4517 623 Gene3D G3DSA:1.20.1250.20 225 420 2.2E-8 T 11-11-2016 vm_RS05135 d48c5052016a6d472dffe792dddc4517 623 Pfam PF01553 Acyltransferase 440 566 5.5E-25 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 vm_RS05135 d48c5052016a6d472dffe792dddc4517 623 SMART SM00563 455 569 3.8E-36 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 vm_RS05135 d48c5052016a6d472dffe792dddc4517 623 SUPERFAMILY SSF103473 14 423 2.62E-25 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS05135 d48c5052016a6d472dffe792dddc4517 623 Pfam PF07690 Major Facilitator Superfamily 18 316 1.1E-11 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 vm_RS12505 7a7bdbb984886a09f691f3e96ed967aa 333 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 148 156 - T 11-11-2016 IPR000957 Sulphate/thiosulphate-binding, conserved site GO:0008271|GO:0008272|GO:0030288 vm_RS12505 7a7bdbb984886a09f691f3e96ed967aa 333 Pfam PF13531 Bacterial extracellular solute-binding protein 34 284 3.5E-39 T 11-11-2016 vm_RS12505 7a7bdbb984886a09f691f3e96ed967aa 333 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 21 330 1.1E-136 T 11-11-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 vm_RS12505 7a7bdbb984886a09f691f3e96ed967aa 333 Gene3D G3DSA:3.40.190.10 168 299 7.3E-25 T 11-11-2016 vm_RS12505 7a7bdbb984886a09f691f3e96ed967aa 333 Gene3D G3DSA:3.40.190.10 23 165 9.9E-44 T 11-11-2016 vm_RS12505 7a7bdbb984886a09f691f3e96ed967aa 333 SUPERFAMILY SSF53850 22 330 1.58E-72 T 11-11-2016 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Pfam PF10531 SLBB domain 102 146 0.0016 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Pfam PF10531 SLBB domain 588 630 1.0E-7 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Pfam PF10531 SLBB domain 393 443 3.6E-7 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Pfam PF10531 SLBB domain 296 349 1.4E-13 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Pfam PF10531 SLBB domain 493 536 1.5E-6 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Pfam PF10531 SLBB domain 209 250 6.4E-5 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Gene3D G3DSA:3.10.560.10 583 669 1.6E-14 T 11-11-2016 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Gene3D G3DSA:3.10.560.10 205 285 2.8E-13 T 11-11-2016 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Gene3D G3DSA:3.10.560.10 93 178 2.2E-15 T 11-11-2016 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Gene3D G3DSA:3.10.560.10 485 574 2.6E-14 T 11-11-2016 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Gene3D G3DSA:3.10.560.10 294 375 1.2E-15 T 11-11-2016 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Gene3D G3DSA:3.10.560.10 390 470 2.8E-11 T 11-11-2016 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Pfam PF02563 Polysaccharide biosynthesis/export protein 26 92 1.9E-10 T 11-11-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 vm_RS05455 3471da61bca4d3e5e3bdc60b46c2e573 698 Gene3D G3DSA:3.30.1950.10 30 88 3.5E-10 T 11-11-2016 vm_RS00675 b345a7e050847da0d3baa04a9b62f114 199 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 131 137 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 vm_RS00675 b345a7e050847da0d3baa04a9b62f114 199 SUPERFAMILY SSF53335 18 195 2.47E-56 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS00675 b345a7e050847da0d3baa04a9b62f114 199 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 15 196 3.3E-58 T 11-11-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS00675 b345a7e050847da0d3baa04a9b62f114 199 PIRSF PIRSF004553 18 198 8.2E-54 T 11-11-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS00675 b345a7e050847da0d3baa04a9b62f114 199 Gene3D G3DSA:3.40.50.150 11 198 2.5E-68 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS00675 b345a7e050847da0d3baa04a9b62f114 199 Pfam PF03602 Conserved hypothetical protein 95 19 194 1.0E-62 T 11-11-2016 vm_RS12510 91453489470bd3145ad4511974d4bfa3 295 Gene3D G3DSA:3.40.50.1100 42 142 1.1E-38 T 11-11-2016 vm_RS12510 91453489470bd3145ad4511974d4bfa3 295 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 32 50 - T 11-11-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 vm_RS12510 91453489470bd3145ad4511974d4bfa3 295 TIGRFAM TIGR01138 cysM: cysteine synthase B 6 294 2.6E-149 T 11-11-2016 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 vm_RS12510 91453489470bd3145ad4511974d4bfa3 295 Gene3D G3DSA:3.40.50.1100 148 294 1.5E-77 T 11-11-2016 vm_RS12510 91453489470bd3145ad4511974d4bfa3 295 Gene3D G3DSA:3.40.50.1100 4 41 1.5E-77 T 11-11-2016 vm_RS12510 91453489470bd3145ad4511974d4bfa3 295 SUPERFAMILY SSF53686 5 290 1.3E-87 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS12510 91453489470bd3145ad4511974d4bfa3 295 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 283 3.6E-63 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS12510 91453489470bd3145ad4511974d4bfa3 295 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 294 2.8E-124 T 11-11-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 vm_RS17790 8c79da3587f78195e85bf3eaa01ef72e 88 Gene3D G3DSA:3.90.190.20 40 88 1.0E-14 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS17790 8c79da3587f78195e85bf3eaa01ef72e 88 SUPERFAMILY SSF53244 38 88 2.53E-13 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS17790 8c79da3587f78195e85bf3eaa01ef72e 88 SUPERFAMILY SSF53623 2 35 5.19E-7 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS17790 8c79da3587f78195e85bf3eaa01ef72e 88 Pfam PF02875 Mur ligase family, glutamate ligase domain 38 88 3.2E-7 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS17790 8c79da3587f78195e85bf3eaa01ef72e 88 Gene3D G3DSA:3.40.1190.10 2 39 2.5E-9 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS11205 c33d2e9d3105213a652e0da25f7263ed 107 Gene3D G3DSA:3.30.70.20 3 103 1.3E-21 T 11-11-2016 vm_RS11205 c33d2e9d3105213a652e0da25f7263ed 107 SUPERFAMILY SSF54862 3 89 6.28E-23 T 11-11-2016 vm_RS11205 c33d2e9d3105213a652e0da25f7263ed 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 5.5E-12 T 11-11-2016 IPR000813 7Fe ferredoxin GO:0009055 vm_RS11205 c33d2e9d3105213a652e0da25f7263ed 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 5.5E-12 T 11-11-2016 IPR000813 7Fe ferredoxin GO:0009055 vm_RS11205 c33d2e9d3105213a652e0da25f7263ed 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 5.5E-12 T 11-11-2016 IPR000813 7Fe ferredoxin GO:0009055 vm_RS11205 c33d2e9d3105213a652e0da25f7263ed 107 Pfam PF11953 Domain of unknown function (DUF3470) 68 107 3.9E-18 T 11-11-2016 IPR022569 Ferredoxin, C-terminal vm_RS11205 c33d2e9d3105213a652e0da25f7263ed 107 Pfam PF13187 4Fe-4S dicluster domain 8 55 9.5E-7 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain vm_RS05195 138940bb9193b1386120d98f0400c20f 846 SUPERFAMILY SSF51445 520 832 3.51E-48 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS05195 138940bb9193b1386120d98f0400c20f 846 SMART SM00495 28 74 3.9E-10 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS05195 138940bb9193b1386120d98f0400c20f 846 SMART SM00495 276 325 2.2E-8 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS05195 138940bb9193b1386120d98f0400c20f 846 SMART SM00636 522 824 8.3E-5 T 11-11-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 vm_RS05195 138940bb9193b1386120d98f0400c20f 846 ProSitePatterns PS01095 Chitinases family 18 active site. 636 644 - T 11-11-2016 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 vm_RS05195 138940bb9193b1386120d98f0400c20f 846 Pfam PF00704 Glycosyl hydrolases family 18 523 784 9.9E-25 T 11-11-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 vm_RS05195 138940bb9193b1386120d98f0400c20f 846 Pfam PF02839 Carbohydrate binding domain 29 71 5.0E-9 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS05195 138940bb9193b1386120d98f0400c20f 846 Gene3D G3DSA:3.20.20.80 521 833 2.0E-58 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS05195 138940bb9193b1386120d98f0400c20f 846 Gene3D G3DSA:2.10.10.20 25 77 1.1E-12 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS05195 138940bb9193b1386120d98f0400c20f 846 SUPERFAMILY SSF51055 19 77 1.96E-12 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS02310 1c2cff8405ef1b205a7fc498284b784e 185 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 23 175 1.5E-62 T 11-11-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 vm_RS02310 1c2cff8405ef1b205a7fc498284b784e 185 Gene3D G3DSA:3.40.50.1000 15 175 1.9E-45 T 11-11-2016 IPR023214 HAD-like domain vm_RS02310 1c2cff8405ef1b205a7fc498284b784e 185 PIRSF PIRSF006118 10 185 3.4E-74 T 11-11-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 vm_RS02310 1c2cff8405ef1b205a7fc498284b784e 185 SUPERFAMILY SSF56784 21 178 4.8E-40 T 11-11-2016 IPR023214 HAD-like domain vm_RS02310 1c2cff8405ef1b205a7fc498284b784e 185 Pfam PF08282 haloacid dehalogenase-like hydrolase 92 155 3.2E-8 T 11-11-2016 IPR023214 HAD-like domain vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 Gene3D G3DSA:1.10.287.130 243 271 1.4E-4 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 Gene3D G3DSA:1.10.287.130 170 200 1.4E-4 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 SUPERFAMILY SSF47384 169 221 1.88E-6 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 404 1.1E-20 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 369 1.1E-20 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 383 1.1E-20 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 423 1.1E-20 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 SMART SM00387 317 426 2.4E-34 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 320 423 1.1E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 Pfam PF00512 His Kinase A (phospho-acceptor) domain 175 274 4.1E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 Gene3D G3DSA:3.30.565.10 281 424 9.3E-44 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 SMART SM00388 174 276 4.8E-4 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 Pfam PF08448 PAS fold 12 131 2.0E-5 T 11-11-2016 IPR013656 PAS fold-4 vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 SUPERFAMILY SSF55874 270 424 1.1E-43 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09425 13429beeffc3f3d299fe83960fd18d34 439 Gene3D G3DSA:3.30.450.20 3 123 1.2E-6 T 11-11-2016 vm_RS11555 b53000b76dd155a02a9abd4c2039f907 325 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 7 305 9.8E-76 T 11-11-2016 IPR011862 Phosphate binding protein GO:0006810 vm_RS11555 b53000b76dd155a02a9abd4c2039f907 325 Gene3D G3DSA:3.40.190.10 121 263 4.8E-36 T 11-11-2016 vm_RS11555 b53000b76dd155a02a9abd4c2039f907 325 SUPERFAMILY SSF53850 35 317 5.64E-67 T 11-11-2016 vm_RS11555 b53000b76dd155a02a9abd4c2039f907 325 Gene3D G3DSA:3.40.190.10 41 118 1.8E-7 T 11-11-2016 vm_RS11555 b53000b76dd155a02a9abd4c2039f907 325 Gene3D G3DSA:3.40.190.10 264 314 1.8E-7 T 11-11-2016 vm_RS11555 b53000b76dd155a02a9abd4c2039f907 325 Pfam PF12849 PBP superfamily domain 36 293 7.0E-32 T 11-11-2016 IPR024370 PBP domain vm_RS02040 90365e36d6492479be76ae081424fd93 167 Gene3D G3DSA:3.30.160.20 10 73 1.8E-30 T 11-11-2016 IPR014720 Double-stranded RNA-binding domain vm_RS02040 90365e36d6492479be76ae081424fd93 167 Pfam PF03719 Ribosomal protein S5, C-terminal domain 88 158 1.6E-29 T 11-11-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 vm_RS02040 90365e36d6492479be76ae081424fd93 167 Pfam PF00333 Ribosomal protein S5, N-terminal domain 12 75 7.0E-29 T 11-11-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 vm_RS02040 90365e36d6492479be76ae081424fd93 167 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 10 163 9.5E-69 T 11-11-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 vm_RS02040 90365e36d6492479be76ae081424fd93 167 SUPERFAMILY SSF54211 80 159 6.57E-27 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS02040 90365e36d6492479be76ae081424fd93 167 Gene3D G3DSA:3.30.230.10 78 159 1.1E-32 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS02040 90365e36d6492479be76ae081424fd93 167 SUPERFAMILY SSF54768 8 76 1.36E-23 T 11-11-2016 vm_RS02040 90365e36d6492479be76ae081424fd93 167 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 164 34.523 T 11-11-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 vm_RS02040 90365e36d6492479be76ae081424fd93 167 ProSitePatterns PS00585 Ribosomal protein S5 signature. 29 61 - T 11-11-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 Gene3D G3DSA:3.40.50.300 170 351 2.8E-41 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 Gene3D G3DSA:1.10.1780.10 1 142 4.7E-44 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 SUPERFAMILY SSF81923 1 142 3.66E-59 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 Gene3D G3DSA:1.10.8.60 354 438 8.7E-31 T 11-11-2016 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 736 0.0 T 11-11-2016 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 304 316 - T 11-11-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 1.3E-12 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 655 735 8.0E-25 T 11-11-2016 IPR019489 Clp ATPase, C-terminal vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 520 538 - T 11-11-2016 IPR028299 ClpA/B, conserved site 2 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 SUPERFAMILY SSF52540 170 425 3.43E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 213 326 5.0E-12 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 Gene3D G3DSA:1.10.8.60 666 750 2.1E-30 T 11-11-2016 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 597 611 4.6E-36 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 493 511 4.6E-36 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 535 553 4.6E-36 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 564 582 4.6E-36 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 SMART SM01086 655 744 5.5E-37 T 11-11-2016 IPR019489 Clp ATPase, C-terminal vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 Pfam PF07724 AAA domain (Cdc48 subfamily) 488 648 3.8E-47 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 Gene3D G3DSA:3.40.50.300 444 665 3.8E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 SMART SM00382 208 353 3.6E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 SMART SM00382 489 656 7.2E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS09135 a885e355011aa8ae19955cbd922c18c2 755 SUPERFAMILY SSF52540 439 743 2.28E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13950 c1980df7e7d30c83f31950a47260d11b 356 Gene3D G3DSA:3.20.20.210 2 354 5.1E-155 T 11-11-2016 vm_RS13950 c1980df7e7d30c83f31950a47260d11b 356 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS13950 c1980df7e7d30c83f31950a47260d11b 356 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 350 50.877 T 11-11-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS13950 c1980df7e7d30c83f31950a47260d11b 356 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS13950 c1980df7e7d30c83f31950a47260d11b 356 SUPERFAMILY SSF51726 1 354 9.07E-121 T 11-11-2016 vm_RS13950 c1980df7e7d30c83f31950a47260d11b 356 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 348 1.2E-140 T 11-11-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS13950 c1980df7e7d30c83f31950a47260d11b 356 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 348 6.0E-142 T 11-11-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|Reactome: R-HSA-189451 vm_RS05990 1f64094e69e4ec2f14c4718c50825aad 146 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 144 6.7E-30 T 11-11-2016 IPR002178 PTS EIIA type-2 domain vm_RS05990 1f64094e69e4ec2f14c4718c50825aad 146 SUPERFAMILY SSF55804 1 144 1.18E-28 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 vm_RS05990 1f64094e69e4ec2f14c4718c50825aad 146 Gene3D G3DSA:3.40.930.10 1 144 1.3E-36 T 11-11-2016 IPR002178 PTS EIIA type-2 domain vm_RS04060 037dcf75019a1099d28984952b8126ae 270 Pfam PF13369 Transglutaminase-like superfamily 34 184 2.2E-44 T 11-11-2016 IPR032698 Protein SirB1, N-terminal vm_RS04060 037dcf75019a1099d28984952b8126ae 270 Pfam PF13371 Tetratricopeptide repeat 187 259 1.4E-23 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS04060 037dcf75019a1099d28984952b8126ae 270 SUPERFAMILY SSF48452 190 257 3.54E-7 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS04060 037dcf75019a1099d28984952b8126ae 270 Gene3D G3DSA:1.25.40.10 183 251 3.4E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS04060 037dcf75019a1099d28984952b8126ae 270 Gene3D G3DSA:1.25.40.10 13 48 3.4E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS12285 e161c819d8b08c6b5621fd18d6c026f1 157 Gene3D G3DSA:2.30.30.220 5 110 7.7E-50 T 11-11-2016 IPR007481 Stringent starvation protein B vm_RS12285 e161c819d8b08c6b5621fd18d6c026f1 157 SUPERFAMILY SSF101738 5 112 6.41E-47 T 11-11-2016 IPR007481 Stringent starvation protein B vm_RS12285 e161c819d8b08c6b5621fd18d6c026f1 157 Pfam PF04386 Stringent starvation protein B 9 157 7.7E-40 T 11-11-2016 IPR007481 Stringent starvation protein B vm_RS12285 e161c819d8b08c6b5621fd18d6c026f1 157 PIRSF PIRSF005276 3 157 2.6E-59 T 11-11-2016 IPR007481 Stringent starvation protein B vm_RS06725 000ecfe94a953c8a5e10f3fcd43cda26 207 Gene3D G3DSA:2.160.10.10 18 203 1.8E-54 T 11-11-2016 vm_RS06725 000ecfe94a953c8a5e10f3fcd43cda26 207 SUPERFAMILY SSF51161 18 204 1.23E-44 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS06725 000ecfe94a953c8a5e10f3fcd43cda26 207 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 111 143 2.2E-9 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS06725 000ecfe94a953c8a5e10f3fcd43cda26 207 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 117 145 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 vm_RS10280 0f2ee64a6eac790ad4cde8fc9fe66e81 285 Hamap MF_00509 Cell division protein ZipA [zipA]. 2 277 22.8 T 11-11-2016 IPR011919 Cell division protein ZipA GO:0000917|GO:0007049|GO:0016021 vm_RS10280 0f2ee64a6eac790ad4cde8fc9fe66e81 285 SMART SM00771 145 275 3.0E-73 T 11-11-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 vm_RS10280 0f2ee64a6eac790ad4cde8fc9fe66e81 285 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 148 279 7.0E-72 T 11-11-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 vm_RS10280 0f2ee64a6eac790ad4cde8fc9fe66e81 285 Gene3D G3DSA:3.30.1400.10 146 281 5.5E-58 T 11-11-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 vm_RS10280 0f2ee64a6eac790ad4cde8fc9fe66e81 285 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 148 274 5.1E-46 T 11-11-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 vm_RS10280 0f2ee64a6eac790ad4cde8fc9fe66e81 285 SUPERFAMILY SSF64383 147 281 4.97E-49 T 11-11-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 vm_RS10280 0f2ee64a6eac790ad4cde8fc9fe66e81 285 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 3 275 6.1E-104 T 11-11-2016 IPR011919 Cell division protein ZipA GO:0000917|GO:0007049|GO:0016021 vm_RS01810 7158aa0de4a6db46d63b3f5565bb4873 224 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 11-11-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 vm_RS01810 7158aa0de4a6db46d63b3f5565bb4873 224 SUPERFAMILY SSF51366 4 218 1.55E-76 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 vm_RS01810 7158aa0de4a6db46d63b3f5565bb4873 224 Gene3D G3DSA:3.20.20.70 2 222 3.0E-97 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS01810 7158aa0de4a6db46d63b3f5565bb4873 224 PIRSF PIRSF001461 1 224 3.0E-106 T 11-11-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 vm_RS01810 7158aa0de4a6db46d63b3f5565bb4873 224 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 11-11-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 vm_RS01810 7158aa0de4a6db46d63b3f5565bb4873 224 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 7.4E-92 T 11-11-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 vm_RS01810 7158aa0de4a6db46d63b3f5565bb4873 224 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 5 216 4.4E-100 T 11-11-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 vm_RS08440 e5b3221583579546f14ecc24abc49604 451 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 446 7.5E-8 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08440 e5b3221583579546f14ecc24abc49604 451 SMART SM01049 42 133 7.6E-32 T 11-11-2016 IPR033480 Single Cache domain 2 vm_RS08440 e5b3221583579546f14ecc24abc49604 451 SMART SM00387 353 447 8.7E-6 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08440 e5b3221583579546f14ecc24abc49604 451 Pfam PF07730 Histidine kinase 250 315 4.6E-13 T 11-11-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 vm_RS08440 e5b3221583579546f14ecc24abc49604 451 Gene3D G3DSA:3.30.565.10 351 445 8.5E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08440 e5b3221583579546f14ecc24abc49604 451 Gene3D G3DSA:3.30.565.10 290 316 8.5E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08440 e5b3221583579546f14ecc24abc49604 451 Pfam PF17200 Single Cache domain 2 45 192 3.0E-44 T 11-11-2016 IPR033480 Single Cache domain 2 vm_RS08440 e5b3221583579546f14ecc24abc49604 451 Gene3D G3DSA:3.30.450.20 35 184 1.3E-50 T 11-11-2016 vm_RS08440 e5b3221583579546f14ecc24abc49604 451 SUPERFAMILY SSF55874 322 443 9.69E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08440 e5b3221583579546f14ecc24abc49604 451 PIRSF PIRSF037314 1 450 7.0E-188 T 11-11-2016 IPR017171 Signal transduction histidine kinase, MctS vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 SUPERFAMILY SSF47384 335 375 1.73E-6 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 SMART SM00387 528 641 6.8E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 SMART SM00100 180 304 0.0045 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 531 639 2.0E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 Gene3D G3DSA:3.30.565.10 488 640 8.8E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 SUPERFAMILY SSF55874 480 641 3.93E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 Gene3D G3DSA:2.60.120.10 202 310 2.4E-18 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 SUPERFAMILY SSF51206 202 310 1.57E-20 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 Pfam PF00027 Cyclic nucleotide-binding domain 202 288 6.7E-17 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 Pfam PF00512 His Kinase A (phospho-acceptor) domain 340 381 1.5E-6 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 Gene3D G3DSA:1.10.287.130 335 394 4.7E-5 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 Gene3D G3DSA:3.40.50.2300 6 125 1.4E-5 T 11-11-2016 vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 SUPERFAMILY SSF52172 3 125 4.26E-5 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 PRINTS PR00344 Bacterial sensor protein C-terminal signature 569 583 7.3E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 PRINTS PR00344 Bacterial sensor protein C-terminal signature 625 638 7.3E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09065 3eb283b30f7a5b589627de558f62417f 649 PRINTS PR00344 Bacterial sensor protein C-terminal signature 601 619 7.3E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS02130 f6d98d7186af7afed3a46795837fc948 288 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 39 53 - T 11-11-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 vm_RS02130 f6d98d7186af7afed3a46795837fc948 288 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 114 147 - T 11-11-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 vm_RS02130 f6d98d7186af7afed3a46795837fc948 288 Gene3D G3DSA:3.30.950.10 150 280 5.9E-50 T 11-11-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 vm_RS02130 f6d98d7186af7afed3a46795837fc948 288 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 36 245 1.8E-47 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 vm_RS02130 f6d98d7186af7afed3a46795837fc948 288 SUPERFAMILY SSF53790 30 277 9.68E-80 T 11-11-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 Reactome: R-HSA-5358493 vm_RS02130 f6d98d7186af7afed3a46795837fc948 288 Gene3D G3DSA:3.40.1010.10 33 149 1.4E-45 T 11-11-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 Reactome: R-HSA-5358493 vm_RS02130 f6d98d7186af7afed3a46795837fc948 288 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 34 267 9.3E-93 T 11-11-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377 vm_RS03305 175327270afe5c0057f942da841fe836 343 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 2 340 46.821 T 11-11-2016 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117 vm_RS03305 175327270afe5c0057f942da841fe836 343 TIGRFAM TIGR03536 DapD_gpp: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3 343 8.9E-178 T 11-11-2016 IPR019876 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, gammaproteobacteria KEGG: 00300+2.3.1.117 vm_RS03305 175327270afe5c0057f942da841fe836 343 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 253 285 4.6E-13 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS03305 175327270afe5c0057f942da841fe836 343 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 131 171 4.7E-16 T 11-11-2016 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117 vm_RS03305 175327270afe5c0057f942da841fe836 343 SUPERFAMILY SSF51161 90 323 2.77E-36 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS03305 175327270afe5c0057f942da841fe836 343 Pfam PF14790 Tetrahydrodipicolinate N-succinyltransferase N-terminal 76 129 9.1E-6 T 11-11-2016 vm_RS03305 175327270afe5c0057f942da841fe836 343 Gene3D G3DSA:2.160.10.10 173 340 2.3E-34 T 11-11-2016 vm_RS03305 175327270afe5c0057f942da841fe836 343 Gene3D G3DSA:3.30.60.70 131 171 5.7E-22 T 11-11-2016 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117 vm_RS11485 05ead5b9a9759aff585d923bd034888b 147 SMART SM00116 84 131 2.0E-6 T 11-11-2016 IPR000644 CBS domain vm_RS11485 05ead5b9a9759aff585d923bd034888b 147 SMART SM00116 11 59 2.2E-8 T 11-11-2016 IPR000644 CBS domain vm_RS11485 05ead5b9a9759aff585d923bd034888b 147 Pfam PF00571 CBS domain 4 58 1.1E-13 T 11-11-2016 IPR000644 CBS domain vm_RS11485 05ead5b9a9759aff585d923bd034888b 147 Pfam PF00571 CBS domain 79 127 4.6E-10 T 11-11-2016 IPR000644 CBS domain vm_RS11485 05ead5b9a9759aff585d923bd034888b 147 SUPERFAMILY SSF54631 1 132 1.39E-33 T 11-11-2016 vm_RS11485 05ead5b9a9759aff585d923bd034888b 147 Gene3D G3DSA:3.10.580.10 3 128 1.2E-30 T 11-11-2016 vm_RS09815 97ba087242130da9e1eb4f14c56d6ae9 247 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 vm_RS09815 97ba087242130da9e1eb4f14c56d6ae9 247 SUPERFAMILY SSF51735 10 242 5.18E-62 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS09815 97ba087242130da9e1eb4f14c56d6ae9 247 Gene3D G3DSA:3.40.50.720 9 243 5.9E-66 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS09815 97ba087242130da9e1eb4f14c56d6ae9 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 9.9E-22 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS09815 97ba087242130da9e1eb4f14c56d6ae9 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 9.9E-22 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS09815 97ba087242130da9e1eb4f14c56d6ae9 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 9.9E-22 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS09815 97ba087242130da9e1eb4f14c56d6ae9 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 9.9E-22 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS09815 97ba087242130da9e1eb4f14c56d6ae9 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 9.9E-22 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS09815 97ba087242130da9e1eb4f14c56d6ae9 247 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 9.9E-22 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS09815 97ba087242130da9e1eb4f14c56d6ae9 247 Pfam PF00106 short chain dehydrogenase 13 208 7.5E-50 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS10470 024ec482bba34de66275f0de517d8fac 390 SMART SM00710 131 153 1400.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat vm_RS10470 024ec482bba34de66275f0de517d8fac 390 SMART SM00710 99 130 4200.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat vm_RS10470 024ec482bba34de66275f0de517d8fac 390 SMART SM00710 304 349 5700.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat vm_RS10470 024ec482bba34de66275f0de517d8fac 390 SMART SM00710 164 184 5900.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat vm_RS10470 024ec482bba34de66275f0de517d8fac 390 SMART SM00710 194 224 2800.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat vm_RS10470 024ec482bba34de66275f0de517d8fac 390 SMART SM00710 272 293 450.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat vm_RS10470 024ec482bba34de66275f0de517d8fac 390 SMART SM00710 240 262 4500.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat vm_RS10470 024ec482bba34de66275f0de517d8fac 390 Gene3D G3DSA:2.160.20.10 2 89 2.4E-15 T 11-11-2016 IPR012334 Pectin lyase fold vm_RS10470 024ec482bba34de66275f0de517d8fac 390 Gene3D G3DSA:2.160.20.10 90 384 5.0E-17 T 11-11-2016 IPR012334 Pectin lyase fold vm_RS10470 024ec482bba34de66275f0de517d8fac 390 SUPERFAMILY SSF51126 2 358 3.14E-36 T 11-11-2016 IPR011050 Pectin lyase fold/virulence factor vm_RS10470 024ec482bba34de66275f0de517d8fac 390 Pfam PF13229 Right handed beta helix region 112 289 7.0E-6 T 11-11-2016 vm_RS14490 257c014c0f297752958f47adcf65cbdd 196 SUPERFAMILY SSF46689 5 78 2.24E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS14490 257c014c0f297752958f47adcf65cbdd 196 Hamap MF_01839 Nucleoid occlusion factor SlmA [slmA]. 1 196 40.901 T 11-11-2016 IPR023769 Nucleoid occlusion factor SlmA GO:0010974 vm_RS14490 257c014c0f297752958f47adcf65cbdd 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 58 3.3E-10 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS14490 257c014c0f297752958f47adcf65cbdd 196 SUPERFAMILY SSF48498 81 191 5.63E-10 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal vm_RS14490 257c014c0f297752958f47adcf65cbdd 196 Gene3D G3DSA:1.10.357.10 5 192 8.4E-40 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 vm_RS07510 8cd98b31d9d6312e9f61586c47de9d72 57 ProDom PD051650 RIBOSOME MODULATION FACTOR E FACTOR-RELATED DIMERIZATION BIOGENESIS RIBOSOMES INVOLVED 70S 1 52 3.0E-24 T 11-11-2016 IPR007040 Ribosome modulation factor vm_RS07510 8cd98b31d9d6312e9f61586c47de9d72 57 Hamap MF_00919 Ribosome modulation factor [rmf]. 1 55 30.355 T 11-11-2016 IPR007040 Ribosome modulation factor vm_RS07510 8cd98b31d9d6312e9f61586c47de9d72 57 Gene3D G3DSA:1.10.10.620 1 56 7.0E-28 T 11-11-2016 IPR023200 Ribosome modulation factor-like domain vm_RS07510 8cd98b31d9d6312e9f61586c47de9d72 57 Pfam PF04957 Ribosome modulation factor 1 54 1.5E-28 T 11-11-2016 IPR007040 Ribosome modulation factor vm_RS11315 fd51e959fdb964021605eb35f7479ae0 660 Gene3D G3DSA:3.60.15.10 113 214 3.2E-40 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS11315 fd51e959fdb964021605eb35f7479ae0 660 Gene3D G3DSA:3.60.15.10 257 380 3.2E-40 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS11315 fd51e959fdb964021605eb35f7479ae0 660 Pfam PF14863 Alkyl sulfatase dimerisation 387 525 1.3E-51 T 11-11-2016 IPR029228 Alkyl sulfatase dimerisation domain GO:0046983 vm_RS11315 fd51e959fdb964021605eb35f7479ae0 660 Pfam PF00753 Metallo-beta-lactamase superfamily 125 350 2.0E-37 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS11315 fd51e959fdb964021605eb35f7479ae0 660 Pfam PF14864 Alkyl sulfatase C-terminal 534 657 5.4E-39 T 11-11-2016 IPR029229 Alkyl sulfatase, C-terminal vm_RS11315 fd51e959fdb964021605eb35f7479ae0 660 SUPERFAMILY SSF55718 535 657 1.55E-37 T 11-11-2016 IPR003033 SCP2 sterol-binding domain vm_RS11315 fd51e959fdb964021605eb35f7479ae0 660 SMART SM00849 128 350 3.7E-22 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS11315 fd51e959fdb964021605eb35f7479ae0 660 SUPERFAMILY SSF56281 29 528 1.09E-144 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS11315 fd51e959fdb964021605eb35f7479ae0 660 Gene3D G3DSA:3.30.1050.10 550 648 3.3E-9 T 11-11-2016 IPR003033 SCP2 sterol-binding domain vm_RS06800 81fb646e147af6d39f1b8d1fe9a2a630 223 Pfam PF00005 ABC transporter 21 167 5.7E-31 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS06800 81fb646e147af6d39f1b8d1fe9a2a630 223 SUPERFAMILY SSF52540 1 218 4.56E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06800 81fb646e147af6d39f1b8d1fe9a2a630 223 SMART SM00382 30 218 4.8E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS06800 81fb646e147af6d39f1b8d1fe9a2a630 223 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS06800 81fb646e147af6d39f1b8d1fe9a2a630 223 Gene3D G3DSA:3.40.50.300 1 217 7.3E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02525 781dfae74e62d6b79df4d1cb40db3f7d 177 SMART SM00014 61 170 6.4E-13 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase vm_RS02525 781dfae74e62d6b79df4d1cb40db3f7d 177 Gene3D G3DSA:1.20.144.10 5 173 5.0E-41 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase vm_RS02525 781dfae74e62d6b79df4d1cb40db3f7d 177 SUPERFAMILY SSF48317 6 174 9.81E-38 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase vm_RS02525 781dfae74e62d6b79df4d1cb40db3f7d 177 Pfam PF01569 PAP2 superfamily 63 174 4.2E-20 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase vm_RS11680 2597e1569d053f5de51103736bce8709 99 SUPERFAMILY SSF48295 3 95 1.15E-29 T 11-11-2016 IPR010921 Trp repressor/replication initiator GO:0043565 vm_RS11680 2597e1569d053f5de51103736bce8709 99 Pfam PF01371 Trp repressor protein 9 94 3.6E-33 T 11-11-2016 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 vm_RS11680 2597e1569d053f5de51103736bce8709 99 TIGRFAM TIGR01321 TrpR: trp operon repressor 7 88 1.0E-28 T 11-11-2016 IPR013335 Trp repressor, bacterial GO:0006355 vm_RS11680 2597e1569d053f5de51103736bce8709 99 Hamap MF_00475 Trp operon repressor [trpR]. 6 99 24.301 T 11-11-2016 IPR013335 Trp repressor, bacterial GO:0006355 vm_RS11680 2597e1569d053f5de51103736bce8709 99 Gene3D G3DSA:1.10.1270.10 1 97 5.6E-40 T 11-11-2016 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 vm_RS11680 2597e1569d053f5de51103736bce8709 99 ProDom PD012582 REPRESSOR TRANSCRIPTION TRP OPERON DNA-BINDING REGULATION HOMOLOG AROH FOR TRYPTOPHAN 9 82 2.0E-33 T 11-11-2016 IPR013335 Trp repressor, bacterial GO:0006355 vm_RS11680 2597e1569d053f5de51103736bce8709 99 PIRSF PIRSF003196 1 99 7.7E-41 T 11-11-2016 IPR013335 Trp repressor, bacterial GO:0006355 vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 Hamap MF_01498 DNA repair protein RadA [radA]. 21 456 42.707 T 11-11-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 SUPERFAMILY SSF54211 256 270 3.68E-42 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 SUPERFAMILY SSF54211 304 454 3.68E-42 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 PRINTS PR01874 DNA repair protein radA signature 249 275 1.2E-93 T 11-11-2016 vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 PRINTS PR01874 DNA repair protein radA signature 10 34 1.2E-93 T 11-11-2016 vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 PRINTS PR01874 DNA repair protein radA signature 84 112 1.2E-93 T 11-11-2016 vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 PRINTS PR01874 DNA repair protein radA signature 175 199 1.2E-93 T 11-11-2016 vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 PRINTS PR01874 DNA repair protein radA signature 214 242 1.2E-93 T 11-11-2016 vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 PRINTS PR01874 DNA repair protein radA signature 125 142 1.2E-93 T 11-11-2016 vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 PRINTS PR01874 DNA repair protein radA signature 323 346 1.2E-93 T 11-11-2016 vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 Pfam PF13481 AAA domain 74 223 1.3E-13 T 11-11-2016 vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 Pfam PF13541 Subunit ChlI of Mg-chelatase 346 431 5.5E-9 T 11-11-2016 vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 Gene3D G3DSA:3.40.50.300 60 278 1.5E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 TIGRFAM TIGR00416 sms: DNA repair protein RadA 2 452 3.0E-223 T 11-11-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 SUPERFAMILY SSF52540 69 290 3.87E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 SMART SM00382 92 245 9.2E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS03230 3f83717d712e8ac92b0f3ecaad3aebd0 458 Gene3D G3DSA:3.30.230.10 285 454 5.9E-38 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 288 1.7E-110 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 Gene3D G3DSA:1.10.287.80 237 283 2.2E-30 T 11-11-2016 vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 274 287 - T 11-11-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site Reactome: R-HSA-163210 vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 Gene3D G3DSA:3.40.1380.10 64 191 2.0E-43 T 11-11-2016 vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 Pfam PF00231 ATP synthase 5 287 3.4E-91 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 288 36.552 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 SUPERFAMILY SSF52943 2 288 3.53E-95 T 11-11-2016 IPR023633 ATPase, F1 complex, gamma subunit domain Reactome: R-HSA-163210 vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 Gene3D G3DSA:1.10.287.80 19 60 2.3E-37 T 11-11-2016 vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 Gene3D G3DSA:1.10.287.80 203 236 2.3E-37 T 11-11-2016 vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 PRINTS PR00126 ATP synthase gamma subunit signature 266 287 1.3E-36 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 PRINTS PR00126 ATP synthase gamma subunit signature 235 254 1.3E-36 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 1.3E-36 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS14835 6beecfc8b070f5e9cb9f63b6e0aa8c52 288 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.3E-36 T 11-11-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 Reactome: R-HSA-163210 vm_RS05170 c2e1e57f163711241433951ca34dad18 220 Gene3D G3DSA:2.160.20.70 101 218 2.8E-39 T 11-11-2016 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 vm_RS05170 c2e1e57f163711241433951ca34dad18 220 SUPERFAMILY SSF63848 113 218 5.23E-32 T 11-11-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 vm_RS05170 c2e1e57f163711241433951ca34dad18 220 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 102 2.2E-36 T 11-11-2016 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 vm_RS05170 c2e1e57f163711241433951ca34dad18 220 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 5 218 6.1E-85 T 11-11-2016 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 vm_RS05170 c2e1e57f163711241433951ca34dad18 220 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 4 219 29.233 T 11-11-2016 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 vm_RS05170 c2e1e57f163711241433951ca34dad18 220 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 115 215 5.7E-33 T 11-11-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 vm_RS09665 2caddfc5754bd016145b3448cf1f5f73 418 Gene3D G3DSA:1.10.150.20 171 235 1.2E-17 T 11-11-2016 vm_RS09665 2caddfc5754bd016145b3448cf1f5f73 418 Pfam PF00817 impB/mucB/samB family 5 151 2.5E-30 T 11-11-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 vm_RS09665 2caddfc5754bd016145b3448cf1f5f73 418 Pfam PF11799 impB/mucB/samB family C-terminal domain 240 352 3.7E-5 T 11-11-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 vm_RS09665 2caddfc5754bd016145b3448cf1f5f73 418 SUPERFAMILY SSF56672 1 235 9.78E-65 T 11-11-2016 vm_RS09665 2caddfc5754bd016145b3448cf1f5f73 418 Pfam PF11798 IMS family HHH motif 172 200 1.1E-5 T 11-11-2016 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 vm_RS09665 2caddfc5754bd016145b3448cf1f5f73 418 Gene3D G3DSA:3.30.70.270 67 156 3.0E-17 T 11-11-2016 vm_RS09665 2caddfc5754bd016145b3448cf1f5f73 418 Pfam PF13438 Domain of unknown function (DUF4113) 367 416 4.6E-23 T 11-11-2016 IPR025188 Domain of unknown function DUF4113 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 Gene3D G3DSA:3.30.565.10 450 634 4.0E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 Gene3D G3DSA:2.40.50.180 659 723 1.8E-11 T 11-11-2016 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 SMART SM00073 6 103 1.1E-17 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 SMART SM00387 492 635 4.4E-23 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 634 1.4E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 SUPERFAMILY SSF50341 634 768 1.23E-28 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 Gene3D G3DSA:1.10.287.560 387 448 4.1E-19 T 11-11-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 SUPERFAMILY SSF47226 6 128 4.71E-30 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 SUPERFAMILY SSF55874 450 633 1.44E-38 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 SMART SM01231 387 447 7.6E-18 T 11-11-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 PRINTS PR00344 Bacterial sensor protein C-terminal signature 537 551 1.1E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 PRINTS PR00344 Bacterial sensor protein C-terminal signature 595 613 1.1E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 PRINTS PR00344 Bacterial sensor protein C-terminal signature 619 632 1.1E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 PRINTS PR00344 Bacterial sensor protein C-terminal signature 579 589 1.1E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 SMART SM00260 627 768 6.5E-33 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 Gene3D G3DSA:2.30.30.40 635 656 2.8E-21 T 11-11-2016 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 Gene3D G3DSA:2.30.30.40 724 768 2.8E-21 T 11-11-2016 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 SUPERFAMILY SSF47384 388 448 4.71E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 Gene3D G3DSA:1.20.120.160 5 142 7.4E-39 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 Pfam PF01584 CheW-like domain 641 770 2.5E-22 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 387 447 1.0E-12 T 11-11-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 vm_RS04620 521a2fc9aa596bc31fc0bf97988fd22a 777 Pfam PF01627 Hpt domain 8 100 1.7E-17 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS08625 2876cdb27ec75847cd244f84fb009fbd 170 Gene3D G3DSA:3.30.70.260 86 169 3.7E-15 T 11-11-2016 vm_RS08625 2876cdb27ec75847cd244f84fb009fbd 170 Pfam PF13740 ACT domain 4 65 6.9E-9 T 11-11-2016 vm_RS08625 2876cdb27ec75847cd244f84fb009fbd 170 SUPERFAMILY SSF55021 87 166 3.08E-9 T 11-11-2016 vm_RS08625 2876cdb27ec75847cd244f84fb009fbd 170 Gene3D G3DSA:3.30.70.260 2 67 1.2E-5 T 11-11-2016 vm_RS08625 2876cdb27ec75847cd244f84fb009fbd 170 PIRSF PIRSF028103 1 170 4.6E-50 T 11-11-2016 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 vm_RS02260 598450f891d78a305b7f624174fbd077 447 SUPERFAMILY SSF111283 13 447 2.22E-126 T 11-11-2016 vm_RS02260 598450f891d78a305b7f624174fbd077 447 Pfam PF01523 Putative modulator of DNA gyrase 32 324 4.5E-52 T 11-11-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 vm_RS05865 8f9e27326db637f352e0b2cfc907b011 135 PIRSF PIRSF003230 1 133 1.6E-47 T 11-11-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 vm_RS05865 8f9e27326db637f352e0b2cfc907b011 135 Gene3D G3DSA:3.10.129.10 2 125 2.7E-50 T 11-11-2016 IPR029069 HotDog domain vm_RS05865 8f9e27326db637f352e0b2cfc907b011 135 Pfam PF03061 Thioesterase superfamily 18 101 2.7E-19 T 11-11-2016 IPR006683 Thioesterase domain Reactome: R-HSA-75105 vm_RS05865 8f9e27326db637f352e0b2cfc907b011 135 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 4 126 2.9E-51 T 11-11-2016 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 vm_RS05865 8f9e27326db637f352e0b2cfc907b011 135 SUPERFAMILY SSF54637 2 126 6.18E-41 T 11-11-2016 IPR029069 HotDog domain vm_RS05865 8f9e27326db637f352e0b2cfc907b011 135 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 7 123 3.5E-38 T 11-11-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 vm_RS13650 8514aa0fcd34f0ae28d4563762454bc4 253 PIRSF PIRSF000857 5 251 4.1E-56 T 11-11-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 vm_RS13650 8514aa0fcd34f0ae28d4563762454bc4 253 Gene3D G3DSA:3.40.50.620 14 219 2.2E-61 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS13650 8514aa0fcd34f0ae28d4563762454bc4 253 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 51 222 5.7E-50 T 11-11-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 vm_RS13650 8514aa0fcd34f0ae28d4563762454bc4 253 TIGRFAM TIGR02057 PAPS_reductase: phosphoadenosine phosphosulfate reductase 24 245 2.1E-91 T 11-11-2016 IPR011800 Phosphoadenosine phosphosulphate reductase CysH GO:0004604|GO:0019379 KEGG: 00920+1.8.4.8 vm_RS13650 8514aa0fcd34f0ae28d4563762454bc4 253 Hamap MF_00063 Phosphoadenosine phosphosulfate reductase [cysH]. 12 246 39.794 T 11-11-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 vm_RS13650 8514aa0fcd34f0ae28d4563762454bc4 253 SUPERFAMILY SSF52402 24 211 1.22E-55 T 11-11-2016 vm_RS13650 8514aa0fcd34f0ae28d4563762454bc4 253 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 36 246 1.6E-85 T 11-11-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8 vm_RS13910 040ba11c702111f0334c838c1db975a7 353 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 74 334 1.8E-86 T 11-11-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 vm_RS13910 040ba11c702111f0334c838c1db975a7 353 Gene3D G3DSA:3.40.50.300 114 275 3.9E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13910 040ba11c702111f0334c838c1db975a7 353 Pfam PF03193 Protein of unknown function, DUF258 99 276 3.1E-56 T 11-11-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 vm_RS13910 040ba11c702111f0334c838c1db975a7 353 Gene3D G3DSA:1.10.40.50 276 344 4.0E-24 T 11-11-2016 vm_RS13910 040ba11c702111f0334c838c1db975a7 353 SUPERFAMILY SSF52540 113 338 2.68E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13910 040ba11c702111f0334c838c1db975a7 353 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 40 340 36.753 T 11-11-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 vm_RS03685 4413071d684aa6f03b4cbf785bbb06ab 319 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 319 50.595 T 11-11-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS03685 4413071d684aa6f03b4cbf785bbb06ab 319 SUPERFAMILY SSF52096 5 318 8.81E-104 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS03685 4413071d684aa6f03b4cbf785bbb06ab 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 91 102 3.6E-48 T 11-11-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS03685 4413071d684aa6f03b4cbf785bbb06ab 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 172 185 3.6E-48 T 11-11-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS03685 4413071d684aa6f03b4cbf785bbb06ab 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 200 209 3.6E-48 T 11-11-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS03685 4413071d684aa6f03b4cbf785bbb06ab 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 156 169 3.6E-48 T 11-11-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS03685 4413071d684aa6f03b4cbf785bbb06ab 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 116 134 3.6E-48 T 11-11-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS03685 4413071d684aa6f03b4cbf785bbb06ab 319 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 137 153 3.6E-48 T 11-11-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS03685 4413071d684aa6f03b4cbf785bbb06ab 319 Gene3D G3DSA:3.90.226.10 58 274 5.3E-49 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS03685 4413071d684aa6f03b4cbf785bbb06ab 319 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 151 1.8E-63 T 11-11-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS03685 4413071d684aa6f03b4cbf785bbb06ab 319 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 319 7.6E-164 T 11-11-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388 vm_RS13555 e41b8d511c922089616a5a7090b11420 940 SUPERFAMILY SSF52540 429 568 4.9E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13555 e41b8d511c922089616a5a7090b11420 940 SUPERFAMILY SSF52540 4 204 4.9E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Gene3D G3DSA:1.20.1580.10 693 819 1.4E-54 T 11-11-2016 vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Gene3D G3DSA:3.30.1490.20 200 248 2.0E-27 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Gene3D G3DSA:3.30.1490.20 130 153 2.0E-27 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS13555 e41b8d511c922089616a5a7090b11420 940 SUPERFAMILY SSF52540 621 909 4.09E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13555 e41b8d511c922089616a5a7090b11420 940 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 3 923 0.0 T 11-11-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 939 22.998 T 11-11-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 vm_RS13555 e41b8d511c922089616a5a7090b11420 940 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Gene3D G3DSA:1.10.8.280 285 405 8.0E-46 T 11-11-2016 vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Pfam PF00005 ABC transporter 622 859 4.9E-10 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Gene3D G3DSA:3.40.50.300 2 51 6.7E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Gene3D G3DSA:3.40.50.300 477 595 6.7E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Gene3D G3DSA:3.40.50.300 820 937 5.0E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Gene3D G3DSA:3.40.50.300 601 691 5.0E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Gene3D G3DSA:1.20.1580.10 91 129 4.1E-55 T 11-11-2016 vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Gene3D G3DSA:1.20.1580.10 250 283 4.1E-55 T 11-11-2016 vm_RS13555 e41b8d511c922089616a5a7090b11420 940 Gene3D G3DSA:1.20.1580.10 406 476 4.1E-55 T 11-11-2016 vm_RS13555 e41b8d511c922089616a5a7090b11420 940 ProSitePatterns PS00211 ABC transporters family signature. 829 843 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS07185 b0f42ee09361083ba5542d53f4d41dd2 280 SUPERFAMILY SSF161098 7 277 4.58E-53 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS07185 b0f42ee09361083ba5542d53f4d41dd2 280 Gene3D G3DSA:1.10.3720.10 5 269 2.6E-45 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS07185 b0f42ee09361083ba5542d53f4d41dd2 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 275 2.3E-13 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS02305 26ca9143129667c6b72990588c0fbf7a 187 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 3 185 25.211 T 11-11-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 vm_RS02305 26ca9143129667c6b72990588c0fbf7a 187 PIRSF PIRSF028513 4 185 7.3E-30 T 11-11-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 vm_RS02305 26ca9143129667c6b72990588c0fbf7a 187 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 5 182 4.5E-49 T 11-11-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 vm_RS02305 26ca9143129667c6b72990588c0fbf7a 187 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 9 183 7.9E-50 T 11-11-2016 IPR010664 Lipopolysaccharide assembly, LptC-related vm_RS02360 7bd7109cbd29e13cf449243957b2d1e2 421 SUPERFAMILY SSF55205 6 418 2.13E-143 T 11-11-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 vm_RS02360 7bd7109cbd29e13cf449243957b2d1e2 421 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 416 3.3E-185 T 11-11-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS02360 7bd7109cbd29e13cf449243957b2d1e2 421 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 417 46.153 T 11-11-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS02360 7bd7109cbd29e13cf449243957b2d1e2 421 Gene3D G3DSA:3.65.10.10 220 416 3.5E-60 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 vm_RS02360 7bd7109cbd29e13cf449243957b2d1e2 421 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 10 407 4.8E-124 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 vm_RS02360 7bd7109cbd29e13cf449243957b2d1e2 421 Gene3D G3DSA:3.65.10.10 22 219 1.2E-68 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 vm_RS03270 5753f936e3e8e6fba62dfba3072ed8ac 335 SUPERFAMILY SSF47413 1 60 9.09E-16 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS03270 5753f936e3e8e6fba62dfba3072ed8ac 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 7.8E-18 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS03270 5753f936e3e8e6fba62dfba3072ed8ac 335 Pfam PF13377 Periplasmic binding protein-like domain 169 329 1.8E-36 T 11-11-2016 vm_RS03270 5753f936e3e8e6fba62dfba3072ed8ac 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.5E-7 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS03270 5753f936e3e8e6fba62dfba3072ed8ac 335 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.5E-7 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS03270 5753f936e3e8e6fba62dfba3072ed8ac 335 Gene3D G3DSA:3.40.50.2300 167 330 6.6E-52 T 11-11-2016 vm_RS03270 5753f936e3e8e6fba62dfba3072ed8ac 335 SMART SM00354 1 71 1.0E-32 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS03270 5753f936e3e8e6fba62dfba3072ed8ac 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-11-2016 vm_RS03270 5753f936e3e8e6fba62dfba3072ed8ac 335 Gene3D G3DSA:1.10.260.40 2 57 5.1E-24 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS03270 5753f936e3e8e6fba62dfba3072ed8ac 335 Gene3D G3DSA:3.40.50.2300 58 166 1.9E-49 T 11-11-2016 vm_RS03270 5753f936e3e8e6fba62dfba3072ed8ac 335 SUPERFAMILY SSF53822 61 331 3.73E-82 T 11-11-2016 IPR028082 Periplasmic binding protein-like I vm_RS03120 f64018bd166f903742d2c48096ef25e2 142 Gene3D G3DSA:2.40.160.20 30 142 1.9E-5 T 11-11-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 vm_RS03120 f64018bd166f903742d2c48096ef25e2 142 PIRSF PIRSF028680 1 142 1.1E-59 T 11-11-2016 IPR016895 Uncharacterised conserved protein UCP028680 vm_RS03120 f64018bd166f903742d2c48096ef25e2 142 SUPERFAMILY SSF56925 29 99 9.42E-5 T 11-11-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 vm_RS03120 f64018bd166f903742d2c48096ef25e2 142 SUPERFAMILY SSF56925 126 142 9.42E-5 T 11-11-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 vm_RS00205 feb8dc034f09e22997f4652c3e5517fc 377 Gene3D G3DSA:3.40.50.20 1 82 2.2E-22 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS00205 feb8dc034f09e22997f4652c3e5517fc 377 Gene3D G3DSA:3.30.1490.20 107 171 6.4E-23 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS00205 feb8dc034f09e22997f4652c3e5517fc 377 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 2 346 36.993 T 11-11-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 vm_RS00205 feb8dc034f09e22997f4652c3e5517fc 377 SUPERFAMILY SSF51246 299 373 4.55E-19 T 11-11-2016 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS00205 feb8dc034f09e22997f4652c3e5517fc 377 Gene3D G3DSA:3.30.470.20 177 359 1.3E-61 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS00205 feb8dc034f09e22997f4652c3e5517fc 377 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 3 350 5.3E-106 T 11-11-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 vm_RS00205 feb8dc034f09e22997f4652c3e5517fc 377 Pfam PF02222 ATP-grasp domain 101 274 7.3E-51 T 11-11-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type vm_RS00205 feb8dc034f09e22997f4652c3e5517fc 377 SUPERFAMILY SSF52440 1 88 1.87E-16 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS00205 feb8dc034f09e22997f4652c3e5517fc 377 SUPERFAMILY SSF56059 92 295 6.19E-56 T 11-11-2016 vm_RS11530 e59a973d7a4db353bef87007e3049f86 273 SUPERFAMILY SSF52540 23 259 1.33E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11530 e59a973d7a4db353bef87007e3049f86 273 ProSitePatterns PS00211 ABC transporters family signature. 170 184 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS11530 e59a973d7a4db353bef87007e3049f86 273 Gene3D G3DSA:3.40.50.300 20 264 2.2E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11530 e59a973d7a4db353bef87007e3049f86 273 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 27 273 5.0E-122 T 11-11-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 vm_RS11530 e59a973d7a4db353bef87007e3049f86 273 SMART SM00382 51 254 6.2E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS11530 e59a973d7a4db353bef87007e3049f86 273 Pfam PF00005 ABC transporter 42 198 3.1E-32 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS01110 fbbfbfb4e428dbb300637f531c2a40d4 359 Gene3D G3DSA:3.40.50.2300 62 181 2.8E-22 T 11-11-2016 vm_RS01110 fbbfbfb4e428dbb300637f531c2a40d4 359 Gene3D G3DSA:3.40.50.2300 182 328 4.4E-28 T 11-11-2016 vm_RS01110 fbbfbfb4e428dbb300637f531c2a40d4 359 Pfam PF13407 Periplasmic binding protein domain 64 313 5.7E-30 T 11-11-2016 IPR025997 Periplasmic binding protein vm_RS01110 fbbfbfb4e428dbb300637f531c2a40d4 359 SUPERFAMILY SSF53822 61 337 2.23E-42 T 11-11-2016 IPR028082 Periplasmic binding protein-like I vm_RS09300 b8c5567fd3dbaaab7f6cbb236ccd2061 426 PIRSF PIRSF000521 22 421 2.3E-36 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 vm_RS09300 b8c5567fd3dbaaab7f6cbb236ccd2061 426 Gene3D G3DSA:3.90.1150.10 3 58 5.9E-55 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS09300 b8c5567fd3dbaaab7f6cbb236ccd2061 426 Gene3D G3DSA:3.90.1150.10 329 420 5.9E-55 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS09300 b8c5567fd3dbaaab7f6cbb236ccd2061 426 Gene3D G3DSA:3.40.640.10 59 326 4.9E-92 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS09300 b8c5567fd3dbaaab7f6cbb236ccd2061 426 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 10 418 5.6E-179 T 11-11-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 vm_RS09300 b8c5567fd3dbaaab7f6cbb236ccd2061 426 Pfam PF00202 Aminotransferase class-III 24 417 4.0E-130 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 vm_RS09300 b8c5567fd3dbaaab7f6cbb236ccd2061 426 SUPERFAMILY SSF53383 4 419 1.62E-133 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS09300 b8c5567fd3dbaaab7f6cbb236ccd2061 426 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 1 421 48.48 T 11-11-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62 vm_RS09300 b8c5567fd3dbaaab7f6cbb236ccd2061 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 239 276 - T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 vm_RS10245 9f28696fe9270ae56ac8fbedc8303263 284 SUPERFAMILY SSF52833 3 114 8.14E-26 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS10245 9f28696fe9270ae56ac8fbedc8303263 284 Gene3D G3DSA:3.40.30.10 4 109 2.8E-22 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS10245 9f28696fe9270ae56ac8fbedc8303263 284 Pfam PF14559 Tetratricopeptide repeat 127 190 4.9E-12 T 11-11-2016 vm_RS10245 9f28696fe9270ae56ac8fbedc8303263 284 Pfam PF00085 Thioredoxin 7 109 3.4E-14 T 11-11-2016 IPR013766 Thioredoxin domain GO:0045454 vm_RS10245 9f28696fe9270ae56ac8fbedc8303263 284 Gene3D G3DSA:1.25.40.10 197 284 3.3E-29 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS10245 9f28696fe9270ae56ac8fbedc8303263 284 Pfam PF14561 Tetratricopeptide repeat 195 284 6.3E-26 T 11-11-2016 vm_RS10245 9f28696fe9270ae56ac8fbedc8303263 284 Gene3D G3DSA:1.25.40.10 110 196 2.2E-28 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS10245 9f28696fe9270ae56ac8fbedc8303263 284 SUPERFAMILY SSF48435 90 237 4.58E-5 T 11-11-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 vm_RS09820 5cd9b9722bd254820b9e04435576d18e 145 Pfam PF03692 Putative zinc- or iron-chelating domain 23 91 8.1E-9 T 11-11-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein vm_RS09820 5cd9b9722bd254820b9e04435576d18e 145 PIRSF PIRSF006173 1 144 3.0E-64 T 11-11-2016 IPR008228 Uncharacterised conserved protein UCP006173 vm_RS09820 5cd9b9722bd254820b9e04435576d18e 145 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 1 144 42.019 T 11-11-2016 IPR008228 Uncharacterised conserved protein UCP006173 vm_RS01780 5f43cdab4d36656eadf4a07140ea7779 172 PIRSF PIRSF016481 1 172 5.4E-67 T 11-11-2016 IPR007446 Pilus assembly protein PilP vm_RS01780 5f43cdab4d36656eadf4a07140ea7779 172 Pfam PF04351 Pilus assembly protein, PilP 25 171 5.4E-44 T 11-11-2016 IPR007446 Pilus assembly protein PilP vm_RS01685 0cc079f68cf3e627d1bfac29e09bc1ca 144 SMART SM00450 40 138 5.9E-19 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS01685 0cc079f68cf3e627d1bfac29e09bc1ca 144 Pfam PF00581 Rhodanese-like domain 42 135 1.4E-16 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS01685 0cc079f68cf3e627d1bfac29e09bc1ca 144 Gene3D G3DSA:3.40.250.10 22 143 1.8E-27 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS01685 0cc079f68cf3e627d1bfac29e09bc1ca 144 SUPERFAMILY SSF52821 15 143 2.62E-29 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 Gene3D G3DSA:3.40.50.1170 4 200 2.8E-78 T 11-11-2016 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 PIRSF PIRSF500176 2 333 2.1E-108 T 11-11-2016 vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 Pfam PF00710 Asparaginase, N-terminal 5 192 5.8E-66 T 11-11-2016 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 Gene3D G3DSA:3.40.50.40 212 336 4.3E-48 T 11-11-2016 IPR027473 L-asparaginase, C-terminal domain Reactome: R-HSA-70614 vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 PIRSF PIRSF001220 1 335 2.7E-94 T 11-11-2016 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 TIGRFAM TIGR00519 asnASE_I: L-asparaginase, type I 4 336 6.3E-114 T 11-11-2016 IPR006033 L-asparaginase, type I GO:0004067|GO:0006520 Reactome: R-HSA-70614 vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 84 94 - T 11-11-2016 IPR027475 Asparaginase/glutaminase, active site 2 Reactome: R-HSA-70614 vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 PRINTS PR00139 Asparaginase/glutaminase family signature 261 279 8.4E-17 T 11-11-2016 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 PRINTS PR00139 Asparaginase/glutaminase family signature 6 17 8.4E-17 T 11-11-2016 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 PRINTS PR00139 Asparaginase/glutaminase family signature 83 101 8.4E-17 T 11-11-2016 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 SMART SM00870 5 324 9.6E-139 T 11-11-2016 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 8 16 - T 11-11-2016 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 vm_RS05000 c251c1d256f5bbfe1d16a33a756e2ce4 337 SUPERFAMILY SSF53774 3 336 1.7E-111 T 11-11-2016 IPR006034 Asparaginase/glutaminase GO:0006520 Reactome: R-HSA-70614 vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 SUPERFAMILY SSF55785 18 140 1.06E-8 T 11-11-2016 IPR000014 PAS domain vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 Gene3D G3DSA:3.30.70.270 278 440 9.4E-43 T 11-11-2016 vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 273 435 1.4E-29 T 11-11-2016 IPR000160 GGDEF domain vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 SMART SM00052 449 696 4.6E-67 T 11-11-2016 IPR001633 EAL domain vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 SMART SM00267 265 437 7.1E-43 T 11-11-2016 IPR000160 GGDEF domain vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 Pfam PF13426 PAS domain 165 264 1.9E-11 T 11-11-2016 IPR000014 PAS domain vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 SUPERFAMILY SSF55785 139 261 4.97E-19 T 11-11-2016 IPR000014 PAS domain vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 Gene3D G3DSA:3.30.450.20 19 139 9.8E-9 T 11-11-2016 vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 Gene3D G3DSA:3.30.450.20 140 262 3.3E-18 T 11-11-2016 vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 Pfam PF00990 Diguanylate cyclase, GGDEF domain 276 433 2.7E-33 T 11-11-2016 IPR000160 GGDEF domain vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 SMART SM00091 154 220 0.0037 T 11-11-2016 IPR000014 PAS domain vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 SMART SM00091 31 98 10.0 T 11-11-2016 IPR000014 PAS domain vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 SUPERFAMILY SSF141868 455 699 1.29E-70 T 11-11-2016 IPR001633 EAL domain vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 SUPERFAMILY SSF55073 281 438 7.3E-39 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 270 1.5E-13 T 11-11-2016 IPR000014 PAS domain vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 Pfam PF00563 EAL domain 457 691 1.6E-60 T 11-11-2016 IPR001633 EAL domain vm_RS00340 7b8e4141a2b8b67c9d45614f1b8bf5c9 706 Gene3D G3DSA:3.20.20.450 456 698 2.3E-71 T 11-11-2016 IPR001633 EAL domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 SUPERFAMILY SSF141868 430 677 1.15E-85 T 11-11-2016 IPR001633 EAL domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 SMART SM00091 134 201 2.8 T 11-11-2016 IPR000014 PAS domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 SMART SM00091 11 77 7.0E-5 T 11-11-2016 IPR000014 PAS domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 SUPERFAMILY SSF55073 261 415 6.04E-47 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 Gene3D G3DSA:3.30.450.20 11 111 2.7E-10 T 11-11-2016 vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 Pfam PF00563 EAL domain 430 664 1.0E-72 T 11-11-2016 IPR001633 EAL domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 254 410 1.0E-38 T 11-11-2016 IPR000160 GGDEF domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 Pfam PF08448 PAS fold 18 122 1.8E-6 T 11-11-2016 IPR013656 PAS fold-4 vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 SMART SM00052 423 669 1.8E-107 T 11-11-2016 IPR001633 EAL domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 SMART SM00267 245 413 2.5E-61 T 11-11-2016 IPR000160 GGDEF domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 Gene3D G3DSA:3.30.70.270 258 421 1.3E-53 T 11-11-2016 vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 12 123 1.1E-8 T 11-11-2016 IPR000014 PAS domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 SUPERFAMILY SSF55785 16 121 1.56E-10 T 11-11-2016 IPR000014 PAS domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 Pfam PF00990 Diguanylate cyclase, GGDEF domain 256 409 5.4E-44 T 11-11-2016 IPR000160 GGDEF domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 Pfam PF13188 PAS domain 136 182 2.1E-5 T 11-11-2016 IPR000014 PAS domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 Gene3D G3DSA:3.20.20.450 427 676 6.5E-94 T 11-11-2016 IPR001633 EAL domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 SUPERFAMILY SSF55785 118 203 1.24E-7 T 11-11-2016 IPR000014 PAS domain vm_RS11910 f13003fd700164fbcc2adbdfdae95e8f 684 Gene3D G3DSA:3.30.450.20 127 202 3.7E-7 T 11-11-2016 vm_RS13060 1ee9130553dd01444734487e784d3499 272 Gene3D G3DSA:3.40.50.720 2 160 9.3E-50 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS13060 1ee9130553dd01444734487e784d3499 272 SUPERFAMILY SSF48179 162 270 1.24E-29 T 11-11-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 vm_RS13060 1ee9130553dd01444734487e784d3499 272 PIRSF PIRSF000193 3 270 4.7E-78 T 11-11-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 vm_RS13060 1ee9130553dd01444734487e784d3499 272 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 268 1.5E-71 T 11-11-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 vm_RS13060 1ee9130553dd01444734487e784d3499 272 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 224 246 - T 11-11-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 vm_RS13060 1ee9130553dd01444734487e784d3499 272 Gene3D G3DSA:1.10.3730.10 162 268 5.0E-29 T 11-11-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 vm_RS13060 1ee9130553dd01444734487e784d3499 272 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 268 26.099 T 11-11-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344 vm_RS13060 1ee9130553dd01444734487e784d3499 272 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 268 4.6E-29 T 11-11-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 vm_RS13060 1ee9130553dd01444734487e784d3499 272 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 6 99 5.3E-26 T 11-11-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal vm_RS13060 1ee9130553dd01444734487e784d3499 272 SUPERFAMILY SSF51735 4 160 4.59E-40 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04095 ae7466b65ade1615b949d3d766c40b76 188 ProSitePatterns PS00201 Flavodoxin signature. 6 22 - T 11-11-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 vm_RS04095 ae7466b65ade1615b949d3d766c40b76 188 SUPERFAMILY SSF52218 1 185 3.12E-58 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS04095 ae7466b65ade1615b949d3d766c40b76 188 Pfam PF03358 NADPH-dependent FMN reductase 51 132 8.1E-11 T 11-11-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 vm_RS04095 ae7466b65ade1615b949d3d766c40b76 188 Gene3D G3DSA:3.40.50.360 1 186 6.9E-68 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS12155 50b94964028314ae0fca35f481e47b37 337 SUPERFAMILY SSF53850 24 332 1.04E-73 T 11-11-2016 vm_RS12155 50b94964028314ae0fca35f481e47b37 337 Gene3D G3DSA:3.40.190.10 124 267 4.5E-48 T 11-11-2016 vm_RS12155 50b94964028314ae0fca35f481e47b37 337 Gene3D G3DSA:3.40.190.10 1 119 1.7E-29 T 11-11-2016 vm_RS12155 50b94964028314ae0fca35f481e47b37 337 Gene3D G3DSA:3.40.190.10 268 311 1.7E-29 T 11-11-2016 vm_RS12155 50b94964028314ae0fca35f481e47b37 337 PIRSF PIRSF002825 1 337 5.6E-97 T 11-11-2016 IPR026045 Ferric binding protein vm_RS12155 50b94964028314ae0fca35f481e47b37 337 Pfam PF13343 Bacterial extracellular solute-binding protein 73 297 2.1E-18 T 11-11-2016 vm_RS06680 77c24778adc2e01668c003342cf54752 553 Pfam PF00072 Response regulator receiver domain 11 127 4.3E-12 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06680 77c24778adc2e01668c003342cf54752 553 SUPERFAMILY SSF52172 7 142 6.55E-20 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS06680 77c24778adc2e01668c003342cf54752 553 Gene3D G3DSA:3.40.50.2300 7 137 1.8E-20 T 11-11-2016 vm_RS06680 77c24778adc2e01668c003342cf54752 553 PIRSF PIRSF011521 2 547 2.4E-257 T 11-11-2016 IPR014460 Signal transduction response regulator, predicted, VieB vm_RS06680 77c24778adc2e01668c003342cf54752 553 Gene3D G3DSA:1.25.40.10 166 302 5.1E-15 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS06680 77c24778adc2e01668c003342cf54752 553 SMART SM00448 9 127 3.1E-14 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS06680 77c24778adc2e01668c003342cf54752 553 SUPERFAMILY SSF48452 170 294 6.7E-13 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS01520 53d90401a7e819f089f12906e33f078c 296 Pfam PF01545 Cation efflux family 15 206 5.7E-41 T 11-11-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 vm_RS01520 53d90401a7e819f089f12906e33f078c 296 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 12 287 7.5E-68 T 11-11-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 vm_RS01520 53d90401a7e819f089f12906e33f078c 296 SUPERFAMILY SSF161111 8 207 9.02E-51 T 11-11-2016 vm_RS01520 53d90401a7e819f089f12906e33f078c 296 Gene3D G3DSA:1.20.1510.10 11 206 2.3E-42 T 11-11-2016 IPR027469 Cation efflux protein transmembrane domain vm_RS01520 53d90401a7e819f089f12906e33f078c 296 SUPERFAMILY SSF160240 210 287 1.44E-23 T 11-11-2016 vm_RS01520 53d90401a7e819f089f12906e33f078c 296 Pfam PF16916 Dimerisation domain of Zinc Transporter 210 286 4.0E-26 T 11-11-2016 IPR027470 Cation efflux protein, cytoplasmic domain vm_RS01520 53d90401a7e819f089f12906e33f078c 296 Gene3D G3DSA:3.30.70.1350 207 287 1.3E-29 T 11-11-2016 IPR027470 Cation efflux protein, cytoplasmic domain vm_RS12475 91c801775706e3ea510ebfb7e7314ec3 152 Gene3D G3DSA:1.10.10.10 54 98 1.2E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12475 91c801775706e3ea510ebfb7e7314ec3 152 Pfam PF02631 RecX family 30 148 8.5E-32 T 11-11-2016 IPR003783 Regulatory protein RecX GO:0006282 vm_RS12475 91c801775706e3ea510ebfb7e7314ec3 152 Gene3D G3DSA:1.10.10.10 8 53 3.9E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12475 91c801775706e3ea510ebfb7e7314ec3 152 Gene3D G3DSA:1.10.10.10 100 148 1.2E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12475 91c801775706e3ea510ebfb7e7314ec3 152 Hamap MF_01114 Regulatory protein RecX [recX]. 2 152 14.522 T 11-11-2016 IPR003783 Regulatory protein RecX GO:0006282 vm_RS12785 3eff4b7fbcdb9d1bfaab3ece12a812fa 140 SUPERFAMILY SSF160719 61 125 2.88E-7 T 11-11-2016 vm_RS12785 3eff4b7fbcdb9d1bfaab3ece12a812fa 140 Gene3D G3DSA:3.10.450.40 60 120 4.8E-4 T 11-11-2016 vm_RS12785 3eff4b7fbcdb9d1bfaab3ece12a812fa 140 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 12 134 7.4E-17 T 11-11-2016 IPR017737 Type VI secretion system, lysozyme-related protein vm_RS12785 3eff4b7fbcdb9d1bfaab3ece12a812fa 140 Pfam PF04965 Gene 25-like lysozyme 49 112 3.5E-7 T 11-11-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD vm_RS06230 2d2df7761deaddaae6b778ffeee04889 364 Gene3D G3DSA:2.40.50.100 70 102 1.0E-18 T 11-11-2016 vm_RS06230 2d2df7761deaddaae6b778ffeee04889 364 Gene3D G3DSA:2.40.50.100 164 195 1.0E-18 T 11-11-2016 vm_RS06230 2d2df7761deaddaae6b778ffeee04889 364 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 68 270 1.3E-18 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain vm_RS06230 2d2df7761deaddaae6b778ffeee04889 364 SUPERFAMILY SSF111369 58 215 1.1E-25 T 11-11-2016 vm_RS06230 2d2df7761deaddaae6b778ffeee04889 364 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 356 3.8E-70 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 vm_RS09675 f3799e6215fc377d806f352d162de7f0 77 SUPERFAMILY SSF53098 1 74 2.81E-14 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS09675 f3799e6215fc377d806f352d162de7f0 77 Pfam PF02281 Transposase Tn5 dimerisation domain 3 69 1.2E-11 T 11-11-2016 IPR003201 Transposase Tn5, dimerisation vm_RS09675 f3799e6215fc377d806f352d162de7f0 77 Gene3D G3DSA:1.10.740.10 1 72 7.7E-25 T 11-11-2016 IPR014737 Transposase, Tn5-like, C-terminal vm_RS06290 2f3dad011cdd3066e9644a171522f9e0 426 Gene3D G3DSA:3.65.10.10 239 424 2.1E-74 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 vm_RS06290 2f3dad011cdd3066e9644a171522f9e0 426 SUPERFAMILY SSF55205 1 424 6.02E-145 T 11-11-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 vm_RS06290 2f3dad011cdd3066e9644a171522f9e0 426 ProSitePatterns PS00104 EPSP synthase signature 1. 90 104 - T 11-11-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 vm_RS06290 2f3dad011cdd3066e9644a171522f9e0 426 PIRSF PIRSF000505 2 426 4.0E-157 T 11-11-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 vm_RS06290 2f3dad011cdd3066e9644a171522f9e0 426 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 14 424 2.9E-144 T 11-11-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 vm_RS06290 2f3dad011cdd3066e9644a171522f9e0 426 ProSitePatterns PS00885 EPSP synthase signature 2. 339 357 - T 11-11-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 vm_RS06290 2f3dad011cdd3066e9644a171522f9e0 426 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 420 7.6E-156 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 vm_RS06290 2f3dad011cdd3066e9644a171522f9e0 426 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 10 426 34.432 T 11-11-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163 vm_RS06290 2f3dad011cdd3066e9644a171522f9e0 426 Gene3D G3DSA:3.65.10.10 22 238 1.3E-71 T 11-11-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 vm_RS04200 eda593265e88f705b29d80e7f16dccc1 377 Pfam PF07687 Peptidase dimerisation domain 177 284 1.2E-23 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain vm_RS04200 eda593265e88f705b29d80e7f16dccc1 377 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 4 377 51.878 T 11-11-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 vm_RS04200 eda593265e88f705b29d80e7f16dccc1 377 Gene3D G3DSA:3.30.70.360 190 291 4.7E-35 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain vm_RS04200 eda593265e88f705b29d80e7f16dccc1 377 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 7 375 9.6E-185 T 11-11-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18 vm_RS04200 eda593265e88f705b29d80e7f16dccc1 377 Gene3D G3DSA:3.40.630.10 318 376 1.4E-73 T 11-11-2016 vm_RS04200 eda593265e88f705b29d80e7f16dccc1 377 Gene3D G3DSA:3.40.630.10 4 189 1.4E-73 T 11-11-2016 vm_RS04200 eda593265e88f705b29d80e7f16dccc1 377 SUPERFAMILY SSF55031 181 290 1.14E-28 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain vm_RS04200 eda593265e88f705b29d80e7f16dccc1 377 Pfam PF01546 Peptidase family M20/M25/M40 65 373 1.4E-43 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 vm_RS04200 eda593265e88f705b29d80e7f16dccc1 377 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 99 137 - T 11-11-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 vm_RS04200 eda593265e88f705b29d80e7f16dccc1 377 SUPERFAMILY SSF53187 6 180 1.36E-65 T 11-11-2016 vm_RS04200 eda593265e88f705b29d80e7f16dccc1 377 SUPERFAMILY SSF53187 294 376 1.36E-65 T 11-11-2016 vm_RS01145 2d8ef9db9f3b212b5cfc96739af8165c 468 Pfam PF00860 Permease family 23 415 6.0E-98 T 11-11-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 vm_RS01145 2d8ef9db9f3b212b5cfc96739af8165c 468 TIGRFAM TIGR03173 pbuX: xanthine permease 28 447 4.5E-131 T 11-11-2016 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 vm_RS01145 2d8ef9db9f3b212b5cfc96739af8165c 468 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 18 445 5.5E-127 T 11-11-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 vm_RS01145 2d8ef9db9f3b212b5cfc96739af8165c 468 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 363 383 - T 11-11-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 vm_RS14565 025c2e6a4e3d64e97ad3e89637d8f0f2 191 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 29 122 4.6E-14 T 11-11-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|Reactome: R-HSA-964975 vm_RS14565 025c2e6a4e3d64e97ad3e89637d8f0f2 191 SUPERFAMILY SSF50475 30 151 1.68E-14 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 vm_RS14565 025c2e6a4e3d64e97ad3e89637d8f0f2 191 Gene3D G3DSA:2.30.110.10 25 145 3.4E-23 T 11-11-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 vm_RS14565 025c2e6a4e3d64e97ad3e89637d8f0f2 191 TIGRFAM TIGR04025 PPOX_FMN_DR2398: pyridoxamine 5'-phosphate oxidase, FMN-binding family 8 187 3.5E-62 T 11-11-2016 IPR024029 Pyridoxamine 5-phosphate oxidase, FMN-dependent vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 PRINTS PR00992 Alanine racemase signature 332 349 6.2E-33 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 PRINTS PR00992 Alanine racemase signature 164 176 6.2E-33 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 PRINTS PR00992 Alanine racemase signature 311 326 6.2E-33 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 PRINTS PR00992 Alanine racemase signature 66 82 6.2E-33 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 PRINTS PR00992 Alanine racemase signature 102 120 6.2E-33 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 PRINTS PR00992 Alanine racemase signature 243 270 6.2E-33 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 PRINTS PR00992 Alanine racemase signature 200 211 6.2E-33 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 Gene3D G3DSA:2.40.37.10 259 407 1.6E-46 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 Gene3D G3DSA:3.20.20.10 50 258 2.3E-49 T 11-11-2016 IPR029066 PLP-binding barrel vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 Pfam PF01168 Alanine racemase, N-terminal domain 47 270 3.8E-50 T 11-11-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 SUPERFAMILY SSF51419 47 281 1.83E-47 T 11-11-2016 IPR029066 PLP-binding barrel vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 71 81 - T 11-11-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 SUPERFAMILY SSF50621 271 406 6.28E-41 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 SMART SM01005 278 406 1.9E-49 T 11-11-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 Pfam PF00842 Alanine racemase, C-terminal domain 279 405 1.5E-29 T 11-11-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 TIGRFAM TIGR00492 alr: alanine racemase 43 406 3.2E-70 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS08255 0519248c92ef4bcd4b15e3ed7bb1d15a 407 Hamap MF_01201 Alanine racemase. 40 406 26.187 T 11-11-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 7 326 1.5E-58 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 Gene3D G3DSA:3.50.50.60 279 338 1.0E-57 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 Gene3D G3DSA:3.50.50.60 6 150 1.0E-57 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 Gene3D G3DSA:3.30.390.30 344 460 1.2E-33 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 SUPERFAMILY SSF51905 1 319 5.26E-54 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 346 457 3.3E-30 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 SUPERFAMILY SSF55424 345 463 1.37E-30 T 11-11-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 Gene3D G3DSA:3.50.50.60 157 278 3.0E-24 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PIRSF PIRSF000350 1 463 5.6E-70 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 2 466 64.784 T 11-11-2016 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 3.4E-27 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 291 313 3.4E-27 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 139 157 3.4E-27 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 278 3.4E-27 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 3.4E-27 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 7.1E-49 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 7.1E-49 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 263 277 7.1E-49 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 7.1E-49 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 432 452 7.1E-49 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 306 313 7.1E-49 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 407 422 7.1E-49 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 142 151 7.1E-49 T 11-11-2016 vm_RS00705 660a86f03d05337891309f5bcf127f95 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 342 363 7.1E-49 T 11-11-2016 vm_RS01705 83980c1299c9ed1499d2963789422ed2 179 Pfam PF10400 Virulence activator alpha C-term 92 175 7.3E-15 T 11-11-2016 IPR018309 Transcription regulator PadR, C-terminal vm_RS01705 83980c1299c9ed1499d2963789422ed2 179 SUPERFAMILY SSF46785 3 178 2.27E-45 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS01705 83980c1299c9ed1499d2963789422ed2 179 Gene3D G3DSA:1.10.10.10 1 87 8.6E-30 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS01705 83980c1299c9ed1499d2963789422ed2 179 Pfam PF03551 Transcriptional regulator PadR-like family 7 80 5.7E-16 T 11-11-2016 IPR005149 Transcription regulator PadR, N-terminal vm_RS11345 223cbc7fc4719e7bf683886b3c8ad8e7 464 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 26 462 31.665 T 11-11-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 vm_RS11345 223cbc7fc4719e7bf683886b3c8ad8e7 464 Pfam PF13742 OB-fold nucleic acid binding domain 29 122 2.7E-29 T 11-11-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 vm_RS11345 223cbc7fc4719e7bf683886b3c8ad8e7 464 Pfam PF02601 Exonuclease VII, large subunit 145 458 2.7E-102 T 11-11-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 vm_RS11345 223cbc7fc4719e7bf683886b3c8ad8e7 464 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 30 359 3.5E-134 T 11-11-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 SMART SM00304 187 239 5.3E-6 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 Gene3D G3DSA:3.40.50.2300 646 776 1.8E-38 T 11-11-2016 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 SUPERFAMILY SSF52172 522 634 9.39E-6 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 21 164 9.9E-52 T 11-11-2016 IPR019247 Histidine kinase BarA, N-terminal vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 Pfam PF00672 HAMP domain 168 235 7.0E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 SUPERFAMILY SSF47226 750 763 4.58E-19 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 SUPERFAMILY SSF47226 804 907 4.58E-19 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 PRINTS PR00344 Bacterial sensor protein C-terminal signature 450 460 2.0E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 485 2.0E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 504 2.0E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 PRINTS PR00344 Bacterial sensor protein C-terminal signature 432 446 2.0E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 Pfam PF01627 Hpt domain 824 907 1.4E-10 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 Pfam PF00072 Response regulator receiver domain 656 765 3.0E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 SMART SM00387 391 507 1.4E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 SUPERFAMILY SSF158472 189 236 1.44E-6 T 11-11-2016 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 SMART SM00448 654 767 2.9E-34 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 Pfam PF00512 His Kinase A (phospho-acceptor) domain 280 344 3.8E-20 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 Gene3D G3DSA:3.30.565.10 345 508 1.8E-44 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 SUPERFAMILY SSF52172 654 775 3.7E-36 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 SUPERFAMILY SSF47384 264 345 1.55E-22 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 Gene3D G3DSA:1.20.120.160 816 915 5.7E-18 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 SUPERFAMILY SSF55874 333 506 1.7E-44 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 391 506 3.5E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 SMART SM00073 814 912 7.7E-4 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 Gene3D G3DSA:1.10.287.130 271 340 2.0E-19 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS02695 0e07606b2c0662f3b17da27735c4e1fc 916 SMART SM00388 279 344 4.9E-24 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS14615 fceac5b25579fea68811e782882acc80 279 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 33 277 7.7E-119 T 11-11-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 vm_RS14615 fceac5b25579fea68811e782882acc80 279 Gene3D G3DSA:3.40.50.150 1 279 1.4E-116 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS14615 fceac5b25579fea68811e782882acc80 279 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 2 266 41.501 T 11-11-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 vm_RS14615 fceac5b25579fea68811e782882acc80 279 SUPERFAMILY SSF53335 9 275 1.15E-96 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS08945 a3cf34a3c9f67289feac3f260cd1c47b 595 ProSitePatterns PS00211 ABC transporters family signature. 484 498 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS08945 a3cf34a3c9f67289feac3f260cd1c47b 595 SMART SM00382 375 558 7.8E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS08945 a3cf34a3c9f67289feac3f260cd1c47b 595 Pfam PF00005 ABC transporter 369 512 8.7E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS08945 a3cf34a3c9f67289feac3f260cd1c47b 595 TIGRFAM TIGR02857 CydD: thiol reductant ABC exporter, CydD subunit 20 554 3.6E-179 T 11-11-2016 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD GO:0005524|GO:0016020|GO:0042883 vm_RS08945 a3cf34a3c9f67289feac3f260cd1c47b 595 Gene3D G3DSA:1.20.1560.10 12 331 1.6E-46 T 11-11-2016 vm_RS08945 a3cf34a3c9f67289feac3f260cd1c47b 595 Gene3D G3DSA:3.40.50.300 368 584 1.2E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08945 a3cf34a3c9f67289feac3f260cd1c47b 595 SUPERFAMILY SSF52540 353 580 4.08E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08945 a3cf34a3c9f67289feac3f260cd1c47b 595 SUPERFAMILY SSF90123 12 333 1.24E-54 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 vm_RS08945 a3cf34a3c9f67289feac3f260cd1c47b 595 Pfam PF00664 ABC transporter transmembrane region 25 292 5.4E-40 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 vm_RS02110 f666413797669a8b72aa704664d3238b 151 SUPERFAMILY SSF55729 1 149 1.92E-37 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS02110 f666413797669a8b72aa704664d3238b 151 Pfam PF13673 Acetyltransferase (GNAT) domain 44 148 1.2E-16 T 11-11-2016 IPR000182 GNAT domain GO:0008080 vm_RS02110 f666413797669a8b72aa704664d3238b 151 Gene3D G3DSA:3.40.630.30 2 148 2.8E-49 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS00190 4239634bc4d097a37fec37d72a3de376 371 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 76 287 9.5E-77 T 11-11-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 vm_RS00190 4239634bc4d097a37fec37d72a3de376 371 Pfam PF02481 DNA recombination-mediator protein A 78 278 6.3E-79 T 11-11-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 vm_RS00190 4239634bc4d097a37fec37d72a3de376 371 SUPERFAMILY SSF102405 81 288 5.49E-44 T 11-11-2016 vm_RS00190 4239634bc4d097a37fec37d72a3de376 371 Gene3D G3DSA:3.40.50.450 113 276 6.8E-14 T 11-11-2016 vm_RS04490 90ddd44051f562fca67b4412d4fdee1c 114 SUPERFAMILY SSF81343 4 113 6.54E-25 T 11-11-2016 vm_RS04490 90ddd44051f562fca67b4412d4fdee1c 114 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 10 99 5.8E-6 T 11-11-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04490 90ddd44051f562fca67b4412d4fdee1c 114 PIRSF PIRSF000169 1 114 1.0E-36 T 11-11-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 vm_RS04490 90ddd44051f562fca67b4412d4fdee1c 114 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 112 3.6E-33 T 11-11-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 vm_RS04490 90ddd44051f562fca67b4412d4fdee1c 114 Gene3D G3DSA:1.20.1300.10 1 113 2.5E-35 T 11-11-2016 vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 Pfam PF02838 Glycosyl hydrolase family 20, domain 2 30 162 7.6E-15 T 11-11-2016 IPR015882 Beta-hexosaminidase, bacteial type, N-terminal KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 SUPERFAMILY SSF51445 537 617 2.87E-101 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 SUPERFAMILY SSF51445 165 424 2.87E-101 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 Gene3D G3DSA:3.20.20.80 552 621 2.1E-128 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 Gene3D G3DSA:3.20.20.80 163 460 2.1E-128 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 PRINTS PR00738 Glycosyl hydrolase family 20 signature 188 209 4.0E-40 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 PRINTS PR00738 Glycosyl hydrolase family 20 signature 159 176 4.0E-40 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 PRINTS PR00738 Glycosyl hydrolase family 20 signature 124 144 4.0E-40 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 PRINTS PR00738 Glycosyl hydrolase family 20 signature 240 257 4.0E-40 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 PRINTS PR00738 Glycosyl hydrolase family 20 signature 290 308 4.0E-40 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 PRINTS PR00738 Glycosyl hydrolase family 20 signature 312 325 4.0E-40 T 11-11-2016 IPR025705 Beta-hexosaminidase GO:0004563|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 Pfam PF00728 Glycosyl hydrolase family 20, catalytic domain 165 604 2.6E-118 T 11-11-2016 IPR015883 Glycoside hydrolase family 20, catalytic domain GO:0004553|GO:0005975 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 SUPERFAMILY SSF55545 30 164 5.76E-31 T 11-11-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS13285 f1222631d45d246bee0560b2fbc81600 820 Gene3D G3DSA:3.30.379.10 26 162 3.8E-29 T 11-11-2016 IPR029018 Chitobiase/beta-hexosaminidase domain 2-like Reactome: R-HSA-1660662|Reactome: R-HSA-2022857|Reactome: R-HSA-2024101|Reactome: R-HSA-2160916 vm_RS08720 c64cd07aa264bfb96eef70716efe1b23 218 Hamap MF_00812 Thiopurine S-methyltransferase [tpm]. 2 216 34.408 T 11-11-2016 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 vm_RS08720 c64cd07aa264bfb96eef70716efe1b23 218 PIRSF PIRSF023956 1 218 1.1E-74 T 11-11-2016 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 vm_RS08720 c64cd07aa264bfb96eef70716efe1b23 218 SUPERFAMILY SSF53335 3 214 6.05E-54 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS08720 c64cd07aa264bfb96eef70716efe1b23 218 TIGRFAM TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family 5 214 1.3E-75 T 11-11-2016 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification GO:0008119|GO:0010038|GO:0032259 KEGG: 00983+2.1.1.67 vm_RS08720 c64cd07aa264bfb96eef70716efe1b23 218 Gene3D G3DSA:3.40.50.150 17 216 4.2E-55 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS08720 c64cd07aa264bfb96eef70716efe1b23 218 Pfam PF05724 Thiopurine S-methyltransferase (TPMT) 3 216 8.0E-79 T 11-11-2016 IPR008854 TPMT family GO:0008757 KEGG: 00983+2.1.1.67|Reactome: R-HSA-156581|Reactome: R-HSA-5578995 vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 146 459 7.2E-27 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 Gene3D G3DSA:1.10.1060.10 5 147 8.7E-39 T 11-11-2016 vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 478 1.9E-199 T 11-11-2016 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 Gene3D G3DSA:3.50.50.60 234 407 2.4E-39 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 37 131 1.7E-24 T 11-11-2016 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 SUPERFAMILY SSF46548 2 155 1.99E-36 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 SUPERFAMILY SSF51971 391 474 5.41E-8 T 11-11-2016 vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 Gene3D G3DSA:3.40.50.720 148 233 3.6E-39 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 Gene3D G3DSA:3.40.50.720 411 481 3.6E-39 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 SUPERFAMILY SSF51971 143 407 1.41E-65 T 11-11-2016 vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 PRINTS PR00419 Adrenodoxin reductase family signature 169 182 1.9E-23 T 11-11-2016 vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 PRINTS PR00419 Adrenodoxin reductase family signature 146 168 1.9E-23 T 11-11-2016 vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 PRINTS PR00419 Adrenodoxin reductase family signature 211 221 1.9E-23 T 11-11-2016 vm_RS03080 521ca582d0e2c38aa74122a368cdde76 489 PRINTS PR00419 Adrenodoxin reductase family signature 286 300 1.9E-23 T 11-11-2016 vm_RS08490 f1ac0adb81951fa7ad757181cbdd99fe 335 Pfam PF09375 Imelysin 36 306 5.6E-39 T 11-11-2016 vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 6.9E-17 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 6.9E-17 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 6.9E-17 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 3.1E-70 T 11-11-2016 vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 187 1.3E-5 T 11-11-2016 vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 SUPERFAMILY SSF51735 4 243 6.84E-91 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 242 1.0E-102 T 11-11-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 Gene3D G3DSA:3.40.50.720 2 243 3.6E-94 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 138 166 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 9.9E-53 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 9.9E-53 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 9.9E-53 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 9.9E-53 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 141 9.9E-53 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04860 17bc6a42020cb202898e0383e91f93bc 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 9.9E-53 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS13755 46f4a94707cc46e080af70e19675010b 394 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site vm_RS13755 46f4a94707cc46e080af70e19675010b 394 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 393 1.2E-232 T 11-11-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS13755 46f4a94707cc46e080af70e19675010b 394 Gene3D G3DSA:2.40.30.10 209 298 2.3E-34 T 11-11-2016 vm_RS13755 46f4a94707cc46e080af70e19675010b 394 SUPERFAMILY SSF50465 298 393 3.17E-35 T 11-11-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal vm_RS13755 46f4a94707cc46e080af70e19675010b 394 Pfam PF03143 Elongation factor Tu C-terminal domain 298 392 2.9E-33 T 11-11-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal vm_RS13755 46f4a94707cc46e080af70e19675010b 394 Pfam PF03144 Elongation factor Tu domain 2 225 293 3.9E-17 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 vm_RS13755 46f4a94707cc46e080af70e19675010b 394 Gene3D G3DSA:2.40.30.10 300 393 9.1E-47 T 11-11-2016 vm_RS13755 46f4a94707cc46e080af70e19675010b 394 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 394 59.603 T 11-11-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 vm_RS13755 46f4a94707cc46e080af70e19675010b 394 SUPERFAMILY SSF50447 205 301 2.75E-29 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS13755 46f4a94707cc46e080af70e19675010b 394 PRINTS PR00315 GTP-binding elongation factor signature 58 66 3.5E-24 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS13755 46f4a94707cc46e080af70e19675010b 394 PRINTS PR00315 GTP-binding elongation factor signature 94 105 3.5E-24 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS13755 46f4a94707cc46e080af70e19675010b 394 PRINTS PR00315 GTP-binding elongation factor signature 14 27 3.5E-24 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS13755 46f4a94707cc46e080af70e19675010b 394 PRINTS PR00315 GTP-binding elongation factor signature 131 140 3.5E-24 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS13755 46f4a94707cc46e080af70e19675010b 394 PRINTS PR00315 GTP-binding elongation factor signature 78 88 3.5E-24 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS13755 46f4a94707cc46e080af70e19675010b 394 Gene3D G3DSA:3.40.50.300 3 208 1.2E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13755 46f4a94707cc46e080af70e19675010b 394 SUPERFAMILY SSF52540 6 219 1.61E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13755 46f4a94707cc46e080af70e19675010b 394 Pfam PF00009 Elongation factor Tu GTP binding domain 10 201 2.2E-58 T 11-11-2016 vm_RS13755 46f4a94707cc46e080af70e19675010b 394 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 148 1.2E-13 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 SUPERFAMILY SSF55785 149 249 1.08E-6 T 11-11-2016 IPR000014 PAS domain vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 Gene3D G3DSA:3.30.70.270 412 578 1.1E-51 T 11-11-2016 vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 Pfam PF13188 PAS domain 36 73 0.0031 T 11-11-2016 IPR000014 PAS domain vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 SMART SM00086 350 392 0.0022 T 11-11-2016 IPR001610 PAC motif vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 SMART SM00267 399 575 2.2E-70 T 11-11-2016 IPR000160 GGDEF domain vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 Gene3D G3DSA:3.30.450.20 264 389 4.9E-22 T 11-11-2016 vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 Pfam PF00990 Diguanylate cyclase, GGDEF domain 411 571 1.0E-49 T 11-11-2016 IPR000160 GGDEF domain vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 Pfam PF08448 PAS fold 283 393 9.3E-18 T 11-11-2016 IPR013656 PAS fold-4 vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 Gene3D G3DSA:3.30.450.20 36 127 3.8E-4 T 11-11-2016 vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 SUPERFAMILY SSF55073 415 577 2.12E-46 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 SMART SM00091 156 221 96.0 T 11-11-2016 IPR000014 PAS domain vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 SMART SM00091 277 344 0.0084 T 11-11-2016 IPR000014 PAS domain vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 SMART SM00091 36 100 72.0 T 11-11-2016 IPR000014 PAS domain vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 274 399 4.0E-15 T 11-11-2016 IPR000014 PAS domain vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 406 573 2.3E-48 T 11-11-2016 IPR000160 GGDEF domain vm_RS03095 6c77ddae49b63aa987bd517b0698e1ad 584 SUPERFAMILY SSF55785 264 390 2.09E-20 T 11-11-2016 IPR000014 PAS domain vm_RS14605 1cc10d5b5775471585a7c19e9948f740 723 Gene3D G3DSA:3.40.50.300 552 642 1.5E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14605 1cc10d5b5775471585a7c19e9948f740 723 Gene3D G3DSA:3.40.50.300 286 387 1.5E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14605 1cc10d5b5775471585a7c19e9948f740 723 Gene3D G3DSA:1.10.10.160 115 187 9.8E-24 T 11-11-2016 IPR013986 DExx box DNA helicase domain vm_RS14605 1cc10d5b5775471585a7c19e9948f740 723 Pfam PF13361 UvrD-like helicase C-terminal domain 277 616 3.1E-79 T 11-11-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 vm_RS14605 1cc10d5b5775471585a7c19e9948f740 723 SUPERFAMILY SSF52540 8 642 1.65E-182 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14605 1cc10d5b5775471585a7c19e9948f740 723 Pfam PF00580 UvrD/REP helicase N-terminal domain 11 271 5.7E-77 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 vm_RS14605 1cc10d5b5775471585a7c19e9948f740 723 Gene3D G3DSA:3.40.50.300 8 111 4.0E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14605 1cc10d5b5775471585a7c19e9948f740 723 Gene3D G3DSA:3.40.50.300 188 285 4.0E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14605 1cc10d5b5775471585a7c19e9948f740 723 TIGRFAM TIGR01075 uvrD: DNA helicase II 7 721 0.0 T 11-11-2016 IPR005753 DNA helicase, ATP-dependent, UvrD type GO:0004003|GO:0005737|GO:0006268 vm_RS14605 1cc10d5b5775471585a7c19e9948f740 723 Gene3D G3DSA:1.10.486.10 388 541 6.6E-50 T 11-11-2016 vm_RS08275 ea4c56370eefcb334dcaace00ef038cd 196 Gene3D G3DSA:1.10.3210.10 2 187 1.2E-40 T 11-11-2016 IPR006674 HD domain vm_RS08275 ea4c56370eefcb334dcaace00ef038cd 196 SUPERFAMILY SSF109604 7 185 6.63E-44 T 11-11-2016 vm_RS08275 ea4c56370eefcb334dcaace00ef038cd 196 Pfam PF13023 HD domain 16 178 2.2E-52 T 11-11-2016 IPR006674 HD domain vm_RS03415 ef2dd7ad0f9eb584f9c947ff7497ca12 462 Pfam PF07690 Major Facilitator Superfamily 25 397 2.2E-18 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 vm_RS03415 ef2dd7ad0f9eb584f9c947ff7497ca12 462 SUPERFAMILY SSF103473 8 442 1.83E-38 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS03415 ef2dd7ad0f9eb584f9c947ff7497ca12 462 Gene3D G3DSA:1.20.1250.20 19 220 2.3E-17 T 11-11-2016 vm_RS03415 ef2dd7ad0f9eb584f9c947ff7497ca12 462 Gene3D G3DSA:1.20.1250.20 256 441 1.3E-16 T 11-11-2016 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 395 507 8.2E-28 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 Gene3D G3DSA:1.10.287.970 1 89 8.1E-39 T 11-11-2016 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 SMART SM00388 282 347 3.8E-18 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 SUPERFAMILY SSF55874 336 507 2.75E-41 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 Pfam PF00072 Response regulator receiver domain 529 638 3.3E-18 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 Gene3D G3DSA:3.40.50.2300 519 641 3.4E-29 T 11-11-2016 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 SMART SM00091 155 221 3.7E-8 T 11-11-2016 IPR000014 PAS domain vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 SUPERFAMILY SSF47384 270 347 1.96E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 Gene3D G3DSA:1.10.287.130 274 332 1.2E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 SUPERFAMILY SSF47226 668 779 1.96E-27 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 345 1.0E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 SMART SM00387 394 510 3.0E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 Gene3D G3DSA:3.30.565.10 333 508 1.2E-42 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 SMART SM00073 680 777 1.1E-8 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 PIRSF PIRSF003182 1 783 0.0 T 11-11-2016 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB GO:0000155|GO:0000160|GO:0004673|GO:0016021 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 SUPERFAMILY SSF55785 140 267 1.2E-23 T 11-11-2016 IPR000014 PAS domain vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 PRINTS PR00344 Bacterial sensor protein C-terminal signature 494 507 2.2E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 462 2.2E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 488 2.2E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 PRINTS PR00344 Bacterial sensor protein C-terminal signature 434 448 2.2E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 SMART SM00448 527 638 2.1E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 Pfam PF00989 PAS fold 157 266 1.6E-16 T 11-11-2016 IPR013767 PAS fold GO:0006355 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 Gene3D G3DSA:3.30.450.20 142 267 1.1E-21 T 11-11-2016 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 Pfam PF01627 Hpt domain 691 765 6.8E-11 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 Gene3D G3DSA:1.20.120.160 681 780 4.4E-32 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 276 1.1E-17 T 11-11-2016 IPR000014 PAS domain vm_RS03100 bd72173a4fbf0858f031d889e6b437e1 785 SUPERFAMILY SSF52172 526 641 7.26E-26 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS09540 9621ebfc4a15a87d7a789eb6cbfd4e73 165 Pfam PF00782 Dual specificity phosphatase, catalytic domain 34 149 2.3E-9 T 11-11-2016 IPR000340 Dual specificity phosphatase, catalytic domain GO:0006470|GO:0008138 vm_RS09540 9621ebfc4a15a87d7a789eb6cbfd4e73 165 SUPERFAMILY SSF52799 14 162 7.62E-35 T 11-11-2016 IPR029021 Protein-tyrosine phosphatase-like vm_RS09540 9621ebfc4a15a87d7a789eb6cbfd4e73 165 Gene3D G3DSA:3.90.190.10 15 163 5.1E-39 T 11-11-2016 IPR029021 Protein-tyrosine phosphatase-like vm_RS09540 9621ebfc4a15a87d7a789eb6cbfd4e73 165 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 111 121 - T 11-11-2016 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311|GO:0016791 vm_RS14145 88d9df93abca687b4f7bfb834641f703 209 Gene3D G3DSA:3.30.420.10 26 199 4.2E-36 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS14145 88d9df93abca687b4f7bfb834641f703 209 SUPERFAMILY SSF53098 24 199 7.59E-36 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS14145 88d9df93abca687b4f7bfb834641f703 209 Pfam PF00929 Exonuclease 31 193 4.2E-20 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS14145 88d9df93abca687b4f7bfb834641f703 209 SMART SM00479 29 202 3.8E-21 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 30 621 5.1E-159 T 11-11-2016 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 Pfam PF03958 Bacterial type II/III secretion system short domain 267 343 1.7E-17 T 11-11-2016 IPR005644 NolW-like vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 Pfam PF03958 Bacterial type II/III secretion system short domain 126 187 2.3E-8 T 11-11-2016 IPR005644 NolW-like vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 Pfam PF03958 Bacterial type II/III secretion system short domain 192 259 8.5E-16 T 11-11-2016 IPR005644 NolW-like vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 PRINTS PR01032 Gene IV protein signature 592 614 1.2E-12 T 11-11-2016 vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 PRINTS PR01032 Gene IV protein signature 471 494 1.2E-12 T 11-11-2016 vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 PRINTS PR01032 Gene IV protein signature 539 567 1.2E-12 T 11-11-2016 vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 557 590 - T 11-11-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 Pfam PF00263 Bacterial type II and III secretion system protein 450 612 1.1E-50 T 11-11-2016 IPR004846 Type II/III secretion system GO:0009306 vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 PRINTS PR00811 Bacterial general secretion pathway protein D signature 599 613 4.4E-38 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 PRINTS PR00811 Bacterial general secretion pathway protein D signature 481 491 4.4E-38 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 PRINTS PR00811 Bacterial general secretion pathway protein D signature 343 353 4.4E-38 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 PRINTS PR00811 Bacterial general secretion pathway protein D signature 446 470 4.4E-38 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS00885 f9d99c835afdfe18a7841e590938b80a 675 PRINTS PR00811 Bacterial general secretion pathway protein D signature 576 594 4.4E-38 T 11-11-2016 IPR001775 GspD/PilQ family vm_RS00840 a63948891f7ef9c1cbb2ccca8f75255e 176 Pfam PF13521 AAA domain 4 164 1.7E-39 T 11-11-2016 vm_RS00840 a63948891f7ef9c1cbb2ccca8f75255e 176 Gene3D G3DSA:3.40.50.300 3 169 2.8E-26 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00840 a63948891f7ef9c1cbb2ccca8f75255e 176 SUPERFAMILY SSF52540 3 172 6.36E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01020 2966c8360e11ca0e4cb6609d30fb0479 242 Pfam PF01026 TatD related DNase 3 239 4.6E-32 T 11-11-2016 IPR001130 TatD family GO:0016788 vm_RS01020 2966c8360e11ca0e4cb6609d30fb0479 242 SUPERFAMILY SSF51556 1 237 1.9E-40 T 11-11-2016 IPR032466 Metal-dependent hydrolase vm_RS01020 2966c8360e11ca0e4cb6609d30fb0479 242 Gene3D G3DSA:3.20.20.140 1 237 1.6E-36 T 11-11-2016 vm_RS01020 2966c8360e11ca0e4cb6609d30fb0479 242 PIRSF PIRSF005902 1 242 2.7E-33 T 11-11-2016 IPR001130 TatD family GO:0016788 vm_RS05390 d09595a95166cc68fa11a37b20ab9d32 396 SUPERFAMILY SSF53448 54 320 6.56E-31 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS05390 d09595a95166cc68fa11a37b20ab9d32 396 Pfam PF13641 Glycosyltransferase like family 2 57 274 1.3E-18 T 11-11-2016 vm_RS05390 d09595a95166cc68fa11a37b20ab9d32 396 Gene3D G3DSA:3.90.550.10 57 267 2.0E-15 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS06955 8801aa09e2f803083b855fd4900070b8 267 SUPERFAMILY SSF53850 36 244 2.5E-9 T 11-11-2016 vm_RS06955 8801aa09e2f803083b855fd4900070b8 267 Gene3D G3DSA:3.40.190.10 59 101 2.3E-4 T 11-11-2016 vm_RS06955 8801aa09e2f803083b855fd4900070b8 267 Gene3D G3DSA:3.40.190.10 205 247 2.3E-4 T 11-11-2016 vm_RS05555 889487dc3dfda39baa9094bb46130c1f 173 SUPERFAMILY SSF158442 17 162 7.45E-44 T 11-11-2016 vm_RS05555 889487dc3dfda39baa9094bb46130c1f 173 Pfam PF02600 Disulfide bond formation protein DsbB 14 161 4.1E-42 T 11-11-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 vm_RS05555 889487dc3dfda39baa9094bb46130c1f 173 Gene3D G3DSA:1.20.1550.10 5 172 1.1E-61 T 11-11-2016 IPR023380 Disulphide bond formation protein DsbB-like domain vm_RS05555 889487dc3dfda39baa9094bb46130c1f 173 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 9 170 21.546 T 11-11-2016 IPR022920 Disulphide bond formation protein DsbB vm_RS01360 e6e03f47e4ca9361c4e3a39bc155511a 169 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 17 145 1.1E-15 T 11-11-2016 IPR013830 SGNH hydrolase-type esterase domain vm_RS01360 e6e03f47e4ca9361c4e3a39bc155511a 169 Gene3D G3DSA:3.40.50.1110 20 145 1.2E-21 T 11-11-2016 IPR013830 SGNH hydrolase-type esterase domain vm_RS01360 e6e03f47e4ca9361c4e3a39bc155511a 169 SUPERFAMILY SSF52266 20 146 5.5E-22 T 11-11-2016 IPR013830 SGNH hydrolase-type esterase domain vm_RS07080 799b511be5c1e980079a733eaee997ca 420 Pfam PF00266 Aminotransferase class-V 35 408 3.3E-140 T 11-11-2016 IPR000192 Aminotransferase class V domain vm_RS07080 799b511be5c1e980079a733eaee997ca 420 Gene3D G3DSA:3.40.640.10 47 297 1.6E-80 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS07080 799b511be5c1e980079a733eaee997ca 420 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 230 249 - T 11-11-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site vm_RS07080 799b511be5c1e980079a733eaee997ca 420 SUPERFAMILY SSF53383 17 415 4.5E-114 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS07080 799b511be5c1e980079a733eaee997ca 420 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 19 418 4.5E-163 T 11-11-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 vm_RS07080 799b511be5c1e980079a733eaee997ca 420 Gene3D G3DSA:3.90.1150.10 298 413 1.6E-23 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS14240 76747eab26caeeacc5253d77540c47d9 132 SMART SM00422 2 71 1.0E-31 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 vm_RS14240 76747eab26caeeacc5253d77540c47d9 132 TIGRFAM TIGR02043 ZntR: Zn(II)-responsive transcriptional regulator 1 132 4.2E-63 T 11-11-2016 IPR011788 Zn(II)-responsive transcriptional regulator GO:0003677|GO:0006351|GO:0008270 vm_RS14240 76747eab26caeeacc5253d77540c47d9 132 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 38 58 1.5E-12 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 vm_RS14240 76747eab26caeeacc5253d77540c47d9 132 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 14 27 1.5E-12 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 vm_RS14240 76747eab26caeeacc5253d77540c47d9 132 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 3 14 1.5E-12 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 vm_RS14240 76747eab26caeeacc5253d77540c47d9 132 ProSitePatterns PS00552 MerR-type HTH domain signature. 5 27 - T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 vm_RS14240 76747eab26caeeacc5253d77540c47d9 132 Pfam PF09278 MerR, DNA binding 45 109 1.4E-18 T 11-11-2016 IPR015358 Transcription regulator MerR, DNA binding vm_RS14240 76747eab26caeeacc5253d77540c47d9 132 SUPERFAMILY SSF46955 2 121 2.05E-35 T 11-11-2016 IPR009061 Putative DNA-binding domain vm_RS14240 76747eab26caeeacc5253d77540c47d9 132 Pfam PF00376 MerR family regulatory protein 4 40 3.0E-16 T 11-11-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 vm_RS14240 76747eab26caeeacc5253d77540c47d9 132 Gene3D G3DSA:1.10.1660.10 58 132 6.5E-26 T 11-11-2016 vm_RS14240 76747eab26caeeacc5253d77540c47d9 132 Gene3D G3DSA:1.10.1660.10 1 57 2.0E-28 T 11-11-2016 vm_RS05275 d90b7c36818e018f523161c3cf9dcc3b 332 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 33 317 4.4E-103 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 vm_RS05275 d90b7c36818e018f523161c3cf9dcc3b 332 PIRSF PIRSF006470 1 332 8.0E-120 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 vm_RS05275 d90b7c36818e018f523161c3cf9dcc3b 332 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 33 277 4.7E-76 T 11-11-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 vm_RS07525 7eba0a8f7574072f7b3885d447dd56b6 149 ProDom PD033720 UPF0268 YCBG DEHYDROGENASE PM0482 PBPRA1775 PLU1774 YPO1433/Y2737/YP0877 VV1664 HI1323 HD0178 1 131 2.0E-68 T 11-11-2016 IPR009390 Macrodomain Ter protein, MatP GO:0043565 vm_RS07525 7eba0a8f7574072f7b3885d447dd56b6 149 Hamap MF_01073 Macrodomain Ter protein [matP]. 1 148 28.914 T 11-11-2016 IPR009390 Macrodomain Ter protein, MatP GO:0043565 vm_RS07525 7eba0a8f7574072f7b3885d447dd56b6 149 Pfam PF06303 Organiser of macrodomain of Terminus of chromosome 1 147 3.9E-69 T 11-11-2016 IPR009390 Macrodomain Ter protein, MatP GO:0043565 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 PIRSF PIRSF000429 8 435 5.4E-117 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 TIGRFAM TIGR02446 FadI: acetyl-CoA C-acyltransferase FadI 6 435 3.0E-263 T 11-11-2016 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0005737|GO:0006631|GO:0016042|GO:0016740|GO:0016746 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 SUPERFAMILY SSF53901 296 434 1.6E-31 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 16 433 8.9E-126 T 11-11-2016 IPR002155 Thiolase GO:0008152|GO:0016747 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 SUPERFAMILY SSF53901 12 291 5.54E-59 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 ProSitePatterns PS00737 Thiolases signature 2. 381 397 - T 11-11-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 Pfam PF02803 Thiolase, C-terminal domain 295 433 2.4E-35 T 11-11-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 Gene3D G3DSA:3.40.47.10 303 435 1.5E-45 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 Gene3D G3DSA:3.40.47.10 174 219 1.5E-45 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 Hamap MF_01618 3-ketoacyl-CoA thiolase [fadI]. 1 435 66.222 T 11-11-2016 IPR012806 Acetyl-CoA C-acyltransferase FadI GO:0005737|GO:0006631|GO:0016042|GO:0016740|GO:0016746 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 Pfam PF00108 Thiolase, N-terminal domain 14 286 2.9E-61 T 11-11-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 Gene3D G3DSA:3.40.47.10 14 133 1.8E-51 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS09880 852a214c19dc79a7fc58a3fe2c15b4a2 435 Gene3D G3DSA:3.40.47.10 220 299 1.8E-51 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS03255 cbff86fd2e09ef11e9f8488efc05c9aa 384 Gene3D G3DSA:3.30.450.40 36 149 2.8E-7 T 11-11-2016 IPR029016 GAF domain-like vm_RS03255 cbff86fd2e09ef11e9f8488efc05c9aa 384 Gene3D G3DSA:1.10.3210.10 166 344 3.3E-14 T 11-11-2016 IPR006674 HD domain vm_RS03255 cbff86fd2e09ef11e9f8488efc05c9aa 384 SUPERFAMILY SSF109604 199 361 1.1E-22 T 11-11-2016 vm_RS03255 cbff86fd2e09ef11e9f8488efc05c9aa 384 SUPERFAMILY SSF55781 33 149 8.97E-10 T 11-11-2016 IPR029016 GAF domain-like vm_RS03255 cbff86fd2e09ef11e9f8488efc05c9aa 384 Pfam PF13487 HD domain 244 313 7.2E-14 T 11-11-2016 vm_RS10395 f71efa712bb2385767836736b1c473d6 92 Gene3D G3DSA:3.30.70.1460 8 92 6.0E-35 T 11-11-2016 IPR027471 YbeD-like domain vm_RS10395 f71efa712bb2385767836736b1c473d6 92 Pfam PF04359 Protein of unknown function (DUF493) 12 92 2.1E-28 T 11-11-2016 IPR007454 Uncharacterised protein family UPF0250 vm_RS10395 f71efa712bb2385767836736b1c473d6 92 SUPERFAMILY SSF117991 7 92 1.96E-30 T 11-11-2016 IPR027471 YbeD-like domain vm_RS10395 f71efa712bb2385767836736b1c473d6 92 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 6 92 25.816 T 11-11-2016 IPR007454 Uncharacterised protein family UPF0250 vm_RS08550 e03f36eb466ade8b928d53e1cf87c9a9 177 Pfam PF08534 Redoxin 41 161 8.8E-11 T 11-11-2016 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 vm_RS08550 e03f36eb466ade8b928d53e1cf87c9a9 177 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 28 170 1.3E-45 T 11-11-2016 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 vm_RS08550 e03f36eb466ade8b928d53e1cf87c9a9 177 SUPERFAMILY SSF52833 43 173 2.13E-28 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS08550 e03f36eb466ade8b928d53e1cf87c9a9 177 Gene3D G3DSA:3.40.30.10 18 174 8.0E-34 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 SUPERFAMILY SSF47323 316 458 6.28E-41 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 Gene3D G3DSA:1.20.120.640 306 392 4.2E-28 T 11-11-2016 vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 3.6E-29 T 11-11-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 3.6E-29 T 11-11-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 3.6E-29 T 11-11-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 3.6E-29 T 11-11-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 SMART SM00840 341 402 5.4E-27 T 11-11-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 458 8.0E-193 T 11-11-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 Pfam PF09190 DALR domain 341 402 2.8E-24 T 11-11-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 313 1.2E-142 T 11-11-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 Gene3D G3DSA:3.40.50.620 21 305 4.0E-113 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 SUPERFAMILY SSF52374 1 313 2.09E-103 T 11-11-2016 vm_RS05825 6bc9e7b9dd4cdb8e0f5e39d370abe4fc 459 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 459 39.241 T 11-11-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 vm_RS05940 1c32ffdb27ae40d70204efb603a667c4 99 Gene3D G3DSA:3.40.50.2300 1 94 6.7E-38 T 11-11-2016 vm_RS05940 1c32ffdb27ae40d70204efb603a667c4 99 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 94 2.0E-16 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 vm_RS05940 1c32ffdb27ae40d70204efb603a667c4 99 SUPERFAMILY SSF52794 2 94 2.09E-32 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 vm_RS05940 1c32ffdb27ae40d70204efb603a667c4 99 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 4 87 9.3E-33 T 11-11-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 vm_RS11470 7215eaa0e725b6d2b2d4f37ef0a69b8b 379 Pfam PF01702 Queuine tRNA-ribosyltransferase 128 363 3.5E-96 T 11-11-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 vm_RS11470 7215eaa0e725b6d2b2d4f37ef0a69b8b 379 Gene3D G3DSA:3.20.20.105 2 369 1.5E-172 T 11-11-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 vm_RS11470 7215eaa0e725b6d2b2d4f37ef0a69b8b 379 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 5 370 1.8E-178 T 11-11-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 vm_RS11470 7215eaa0e725b6d2b2d4f37ef0a69b8b 379 SUPERFAMILY SSF51713 3 366 3.14E-165 T 11-11-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 vm_RS11470 7215eaa0e725b6d2b2d4f37ef0a69b8b 379 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 3 361 58.551 T 11-11-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 vm_RS11470 7215eaa0e725b6d2b2d4f37ef0a69b8b 379 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 5 371 1.4E-187 T 11-11-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 vm_RS12210 821d95980b54c9a8cd26b177a1d7c3b3 457 SUPERFAMILY SSF81301 23 180 4.9E-40 T 11-11-2016 vm_RS12210 821d95980b54c9a8cd26b177a1d7c3b3 457 SUPERFAMILY SSF81891 181 393 1.02E-47 T 11-11-2016 vm_RS12210 821d95980b54c9a8cd26b177a1d7c3b3 457 Pfam PF01743 Poly A polymerase head domain 52 183 3.8E-38 T 11-11-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 vm_RS12210 821d95980b54c9a8cd26b177a1d7c3b3 457 Gene3D G3DSA:1.10.3090.10 183 418 1.6E-49 T 11-11-2016 vm_RS12210 821d95980b54c9a8cd26b177a1d7c3b3 457 Pfam PF12626 Polymerase A arginine-rich C-terminus 329 447 3.8E-38 T 11-11-2016 IPR025866 Polymerase A arginine-rich C-terminal domain vm_RS12210 821d95980b54c9a8cd26b177a1d7c3b3 457 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 21 452 9.7E-159 T 11-11-2016 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 vm_RS12210 821d95980b54c9a8cd26b177a1d7c3b3 457 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 210 271 5.1E-21 T 11-11-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 vm_RS12210 821d95980b54c9a8cd26b177a1d7c3b3 457 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 7 448 37.531 T 11-11-2016 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 vm_RS12210 821d95980b54c9a8cd26b177a1d7c3b3 457 Gene3D G3DSA:3.30.460.10 33 182 1.8E-49 T 11-11-2016 vm_RS14630 75333dd5af3a4e89cda031335a5d2279 312 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 309 7.5E-30 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS14630 75333dd5af3a4e89cda031335a5d2279 312 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 18 69 1.0E-9 T 11-11-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain vm_RS14630 75333dd5af3a4e89cda031335a5d2279 312 SUPERFAMILY SSF161098 93 295 2.49E-25 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS14630 75333dd5af3a4e89cda031335a5d2279 312 Gene3D G3DSA:1.10.3720.10 90 307 2.4E-28 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS06645 1d2907ef02c2adad95532d3a5b29f38c 308 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS06645 1d2907ef02c2adad95532d3a5b29f38c 308 SUPERFAMILY SSF52540 5 227 8.88E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06645 1d2907ef02c2adad95532d3a5b29f38c 308 SMART SM00382 30 212 2.1E-15 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS06645 1d2907ef02c2adad95532d3a5b29f38c 308 Pfam PF00005 ABC transporter 22 164 1.2E-35 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS06645 1d2907ef02c2adad95532d3a5b29f38c 308 Gene3D G3DSA:3.40.50.300 2 228 9.1E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 Gene3D G3DSA:2.70.150.10 253 402 2.8E-24 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 Gene3D G3DSA:3.30.70.100 89 159 1.5E-16 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 SUPERFAMILY SSF55008 86 162 1.57E-17 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 Pfam PF00403 Heavy-metal-associated domain 93 154 3.3E-9 T 11-11-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 228 784 4.3E-156 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 273 786 1.0E-125 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 SUPERFAMILY SSF81665 251 306 1.16E-9 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 SUPERFAMILY SSF81665 727 766 1.16E-9 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 SUPERFAMILY SSF81665 404 495 1.16E-9 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 Pfam PF00122 E1-E2 ATPase 278 492 2.5E-54 T 11-11-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 Reactome: R-HSA-936837 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 Gene3D G3DSA:3.40.50.1000 603 751 1.2E-45 T 11-11-2016 IPR023214 HAD-like domain vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 Gene3D G3DSA:3.40.50.1000 476 517 1.2E-45 T 11-11-2016 IPR023214 HAD-like domain vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 503 509 - T 11-11-2016 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 279 762 1.3E-78 T 11-11-2016 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 4 86 1.8E-27 T 11-11-2016 IPR021993 Putative metal-binding domain of cation transport ATPase vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 SUPERFAMILY SSF81653 318 402 1.83E-22 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 ProSitePatterns PS01229 Hypothetical cof family signature 2. 682 704 - T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 245 784 2.0E-165 T 11-11-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 Pfam PF00702 haloacid dehalogenase-like hydrolase 497 695 1.7E-34 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 PRINTS PR00943 Copper-transporting ATPase signature 276 295 3.4E-6 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 PRINTS PR00943 Copper-transporting ATPase signature 135 155 3.4E-6 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 PRINTS PR00943 Copper-transporting ATPase signature 296 314 3.4E-6 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 PRINTS PR00943 Copper-transporting ATPase signature 660 677 3.4E-6 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 SUPERFAMILY SSF56784 500 519 2.3E-49 T 11-11-2016 IPR023214 HAD-like domain vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 SUPERFAMILY SSF56784 554 782 2.3E-49 T 11-11-2016 IPR023214 HAD-like domain vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 353 367 5.5E-27 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 682 701 5.5E-27 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 705 717 5.5E-27 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 501 515 5.5E-27 T 11-11-2016 vm_RS07580 8e75f31b474f4e70803faa5c6818272a 790 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 630 640 5.5E-27 T 11-11-2016 vm_RS01830 50bec8176c1c6ba1a782bb9b537e9e0a 869 SUPERFAMILY SSF56219 473 845 8.06E-30 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase vm_RS01830 50bec8176c1c6ba1a782bb9b537e9e0a 869 Pfam PF00932 Lamin Tail Domain 25 134 2.7E-15 T 11-11-2016 IPR001322 Lamin Tail Domain vm_RS01830 50bec8176c1c6ba1a782bb9b537e9e0a 869 SUPERFAMILY SSF74853 28 132 7.06E-6 T 11-11-2016 IPR001322 Lamin Tail Domain vm_RS01830 50bec8176c1c6ba1a782bb9b537e9e0a 869 Gene3D G3DSA:3.60.10.10 780 845 3.4E-20 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase vm_RS01830 50bec8176c1c6ba1a782bb9b537e9e0a 869 Gene3D G3DSA:3.60.10.10 475 744 3.4E-20 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 Pfam PF01926 50S ribosome-binding GTPase 162 284 1.1E-23 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 Hamap MF_01454 GTPase Obg [obg]. 2 333 46.44 T 11-11-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 2.5E-34 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 2.5E-34 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 2.5E-34 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 2.5E-34 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 Pfam PF01018 GTP1/OBG 3 156 2.2E-56 T 11-11-2016 IPR006169 GTP1/OBG domain GO:0005525 vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 SUPERFAMILY SSF82051 2 157 2.88E-54 T 11-11-2016 IPR006169 GTP1/OBG domain GO:0005525 vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 3.4E-142 T 11-11-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 PIRSF PIRSF002401 1 374 4.6E-136 T 11-11-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 SUPERFAMILY SSF52540 152 338 3.7E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 Gene3D G3DSA:3.40.50.300 160 343 2.0E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 Gene3D G3DSA:2.70.210.12 2 156 2.3E-55 T 11-11-2016 IPR006169 GTP1/OBG domain GO:0005525 vm_RS13220 fa185bc85070407545abc5bd6bb60188 390 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 11-11-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 Gene3D G3DSA:1.10.580.10 17 238 4.2E-74 T 11-11-2016 IPR016142 Citrate synthase-like, large alpha subdomain Reactome: R-HSA-1268020|Reactome: R-HSA-71403 vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 PIRSF PIRSF001369 4 377 5.6E-114 T 11-11-2016 IPR024176 Citrate synthase, bacterial-type vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 Pfam PF00285 Citrate synthase, C-terminal domain 11 358 9.7E-114 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 ProSitePatterns PS00480 Citrate synthase signature. 259 271 - T 11-11-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 Reactome: R-HSA-1268020|Reactome: R-HSA-71403 vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 SUPERFAMILY SSF48256 10 376 7.07E-123 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 11 376 3.1E-164 T 11-11-2016 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 PRINTS PR00143 Citrate synthase signature 329 343 1.3E-36 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 PRINTS PR00143 Citrate synthase signature 252 272 1.3E-36 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 PRINTS PR00143 Citrate synthase signature 199 227 1.3E-36 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 PRINTS PR00143 Citrate synthase signature 177 192 1.3E-36 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 PRINTS PR00143 Citrate synthase signature 126 139 1.3E-36 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 PRINTS PR00143 Citrate synthase signature 309 325 1.3E-36 T 11-11-2016 IPR002020 Citrate synthase GO:0046912 vm_RS08140 ca00486d3043816ba8b092cd27ce03f7 377 Gene3D G3DSA:1.10.230.10 239 323 8.3E-29 T 11-11-2016 IPR016143 Citrate synthase-like, small alpha subdomain Reactome: R-HSA-163765|Reactome: R-HSA-75105 vm_RS03405 bdc256f3f63432bc8d81ecfee2b7da41 194 Gene3D G3DSA:1.10.10.10 127 189 4.8E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS03405 bdc256f3f63432bc8d81ecfee2b7da41 194 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 28 187 2.1E-29 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS03405 bdc256f3f63432bc8d81ecfee2b7da41 194 Pfam PF04542 Sigma-70 region 2 33 99 1.3E-16 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS03405 bdc256f3f63432bc8d81ecfee2b7da41 194 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 54 86 - T 11-11-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS03405 bdc256f3f63432bc8d81ecfee2b7da41 194 Gene3D G3DSA:1.10.1740.10 12 115 4.7E-24 T 11-11-2016 vm_RS03405 bdc256f3f63432bc8d81ecfee2b7da41 194 SUPERFAMILY SSF88659 127 187 3.55E-14 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS03405 bdc256f3f63432bc8d81ecfee2b7da41 194 SUPERFAMILY SSF88946 7 118 1.12E-25 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS03405 bdc256f3f63432bc8d81ecfee2b7da41 194 Pfam PF04545 Sigma-70, region 4 139 186 2.3E-13 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 Pfam PF00742 Homoserine dehydrogenase 601 796 3.1E-44 T 11-11-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 Pfam PF00696 Amino acid kinase family 5 277 2.4E-43 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 Gene3D G3DSA:3.30.360.10 623 779 1.5E-52 T 11-11-2016 vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 SUPERFAMILY SSF53633 5 291 3.27E-60 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 Gene3D G3DSA:3.40.50.720 448 622 3.2E-51 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 647 669 - T 11-11-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 PIRSF PIRSF000727 5 803 6.2E-288 T 11-11-2016 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I GO:0004072|GO:0004412|GO:0009067|GO:0055114 KEGG: 00260+2.7.2.4+1.1.1.3|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4+1.1.1.3|KEGG: 00300+2.7.2.4+1.1.1.3|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 SUPERFAMILY SSF51735 448 623 3.1E-35 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 8 445 8.4E-68 T 11-11-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 Gene3D G3DSA:3.40.1160.10 106 291 1.7E-47 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 Gene3D G3DSA:3.40.1160.10 4 52 1.7E-47 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 457 593 3.4E-15 T 11-11-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 ProSitePatterns PS00324 Aspartokinase signature. 7 15 - T 11-11-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS01545 4e9f68e45322e61237f27dfa1a92a86d 803 SUPERFAMILY SSF55347 601 784 2.48E-47 T 11-11-2016 vm_RS10170 4a872766dbcdb3a678304b1af0235ec9 378 SUPERFAMILY SSF51338 1 53 2.54E-18 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS10170 4a872766dbcdb3a678304b1af0235ec9 378 Gene3D G3DSA:2.30.40.10 2 55 1.5E-10 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS10170 4a872766dbcdb3a678304b1af0235ec9 378 Pfam PF01979 Amidohydrolase family 51 374 1.1E-39 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 vm_RS10170 4a872766dbcdb3a678304b1af0235ec9 378 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 1 374 1.4E-158 T 11-11-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 vm_RS10170 4a872766dbcdb3a678304b1af0235ec9 378 Gene3D G3DSA:2.30.40.10 328 371 9.5E-4 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS10170 4a872766dbcdb3a678304b1af0235ec9 378 Gene3D G3DSA:3.20.20.140 56 327 7.2E-100 T 11-11-2016 vm_RS10170 4a872766dbcdb3a678304b1af0235ec9 378 SUPERFAMILY SSF51556 54 347 2.54E-102 T 11-11-2016 IPR032466 Metal-dependent hydrolase vm_RS10170 4a872766dbcdb3a678304b1af0235ec9 378 PIRSF PIRSF038994 1 378 6.0E-124 T 11-11-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 vm_RS04895 ed95e672562d5ba9f6cfaa2ff1bf01c6 255 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 11-11-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 vm_RS04895 ed95e672562d5ba9f6cfaa2ff1bf01c6 255 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 253 5.9E-94 T 11-11-2016 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 vm_RS04895 ed95e672562d5ba9f6cfaa2ff1bf01c6 255 Pfam PF01026 TatD related DNase 3 253 9.8E-80 T 11-11-2016 IPR001130 TatD family GO:0016788 vm_RS04895 ed95e672562d5ba9f6cfaa2ff1bf01c6 255 SUPERFAMILY SSF51556 1 253 3.51E-90 T 11-11-2016 IPR032466 Metal-dependent hydrolase vm_RS04895 ed95e672562d5ba9f6cfaa2ff1bf01c6 255 Gene3D G3DSA:3.20.20.140 1 253 1.3E-90 T 11-11-2016 vm_RS04895 ed95e672562d5ba9f6cfaa2ff1bf01c6 255 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 190 206 - T 11-11-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 vm_RS04895 ed95e672562d5ba9f6cfaa2ff1bf01c6 255 PIRSF PIRSF005902 1 255 5.1E-84 T 11-11-2016 IPR001130 TatD family GO:0016788 vm_RS02790 f2e433f8228aefbc1b568ed4ffa18471 948 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 557 808 3.5E-100 T 11-11-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 vm_RS02790 f2e433f8228aefbc1b568ed4ffa18471 948 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 34 280 4.9E-99 T 11-11-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 vm_RS02790 f2e433f8228aefbc1b568ed4ffa18471 948 SUPERFAMILY SSF81593 291 440 1.73E-46 T 11-11-2016 vm_RS02790 f2e433f8228aefbc1b568ed4ffa18471 948 Hamap MF_00802 Glutamate-ammonia-ligase adenylyltransferase [glnE]. 31 948 19.489 T 11-11-2016 IPR023057 Glutamate-ammonia-ligase adenylyltransferase GO:0008882 vm_RS02790 f2e433f8228aefbc1b568ed4ffa18471 948 SUPERFAMILY SSF81301 25 290 1.91E-89 T 11-11-2016 vm_RS02790 f2e433f8228aefbc1b568ed4ffa18471 948 SUPERFAMILY SSF81593 821 947 1.49E-30 T 11-11-2016 vm_RS02790 f2e433f8228aefbc1b568ed4ffa18471 948 SUPERFAMILY SSF81301 531 819 1.09E-86 T 11-11-2016 vm_RS02790 f2e433f8228aefbc1b568ed4ffa18471 948 Gene3D G3DSA:3.30.460.10 643 815 6.2E-59 T 11-11-2016 vm_RS02790 f2e433f8228aefbc1b568ed4ffa18471 948 Gene3D G3DSA:3.30.460.10 116 289 2.0E-62 T 11-11-2016 vm_RS02790 f2e433f8228aefbc1b568ed4ffa18471 948 Pfam PF08335 GlnD PII-uridylyltransferase 846 917 4.4E-7 T 11-11-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 vm_RS02790 f2e433f8228aefbc1b568ed4ffa18471 948 Pfam PF08335 GlnD PII-uridylyltransferase 301 440 3.3E-48 T 11-11-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 vm_RS13470 3559eff9f28b5c8a59adf244633b721e 188 Pfam PF13633 Prokaryotic N-terminal methylation site 10 32 2.8E-6 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS13470 3559eff9f28b5c8a59adf244633b721e 188 SUPERFAMILY SSF54523 12 69 4.47E-5 T 11-11-2016 vm_RS13470 3559eff9f28b5c8a59adf244633b721e 188 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 10 30 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS13470 3559eff9f28b5c8a59adf244633b721e 188 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 10 31 1.6E-7 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS14270 035696f26de88ac5306bab22c8d84402 195 Pfam PF04222 Protein of unknown function (DUF416) 6 193 1.5E-77 T 11-11-2016 IPR007338 Protein of unknown function DUF416 vm_RS14270 035696f26de88ac5306bab22c8d84402 195 Gene3D G3DSA:1.20.1590.10 1 194 9.3E-86 T 11-11-2016 IPR023381 YP001051499.1-like domain vm_RS10405 d4bcc12477510cd4764c23e127d5d83d 321 Gene3D G3DSA:3.20.20.70 53 312 1.0E-71 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS10405 d4bcc12477510cd4764c23e127d5d83d 321 Pfam PF04055 Radical SAM superfamily 91 252 1.4E-18 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS10405 d4bcc12477510cd4764c23e127d5d83d 321 PIRSF PIRSF005963 2 320 6.3E-130 T 11-11-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 vm_RS10405 d4bcc12477510cd4764c23e127d5d83d 321 TIGRFAM TIGR00510 lipA: lipoyl synthase 21 321 6.0E-150 T 11-11-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 vm_RS10405 d4bcc12477510cd4764c23e127d5d83d 321 SUPERFAMILY SSF102114 52 316 8.76E-68 T 11-11-2016 vm_RS10405 d4bcc12477510cd4764c23e127d5d83d 321 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 26 73 1.6E-8 T 11-11-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 vm_RS10405 d4bcc12477510cd4764c23e127d5d83d 321 SMART SM00729 84 293 6.5E-19 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 vm_RS10405 d4bcc12477510cd4764c23e127d5d83d 321 Hamap MF_00206 Lipoyl synthase [lipA]. 1 321 154.943 T 11-11-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|Reactome: R-HSA-389661 vm_RS11540 4fd032241fb62369897303954d30e4bb 731 Gene3D G3DSA:1.10.3720.10 413 493 1.4E-48 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS11540 4fd032241fb62369897303954d30e4bb 731 Gene3D G3DSA:1.10.3720.10 34 54 1.4E-48 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS11540 4fd032241fb62369897303954d30e4bb 731 Gene3D G3DSA:1.10.3720.10 569 729 1.4E-48 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS11540 4fd032241fb62369897303954d30e4bb 731 Gene3D G3DSA:2.130.10.10 84 392 1.9E-5 T 11-11-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 vm_RS11540 4fd032241fb62369897303954d30e4bb 731 SUPERFAMILY SSF161098 577 667 1.68E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS11540 4fd032241fb62369897303954d30e4bb 731 SUPERFAMILY SSF161098 427 494 1.68E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS11540 4fd032241fb62369897303954d30e4bb 731 SUPERFAMILY SSF50978 79 400 2.5E-8 T 11-11-2016 IPR017986 WD40-repeat-containing domain GO:0005515 vm_RS11540 4fd032241fb62369897303954d30e4bb 731 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 449 725 3.2E-11 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS04885 b9a01d5d71d824a574531c8280c8d80d 212 Hamap MF_00165 Thymidylate kinase [tmk]. 4 206 27.882 T 11-11-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 vm_RS04885 b9a01d5d71d824a574531c8280c8d80d 212 Pfam PF02223 Thymidylate kinase 8 198 6.0E-58 T 11-11-2016 vm_RS04885 b9a01d5d71d824a574531c8280c8d80d 212 Gene3D G3DSA:3.40.50.300 4 207 6.7E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04885 b9a01d5d71d824a574531c8280c8d80d 212 SUPERFAMILY SSF52540 1 209 7.99E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04885 b9a01d5d71d824a574531c8280c8d80d 212 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 198 2.1E-62 T 11-11-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 vm_RS04885 b9a01d5d71d824a574531c8280c8d80d 212 ProSitePatterns PS01331 Thymidylate kinase signature. 95 107 - T 11-11-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 vm_RS12220 cff246f0e1bbf922e3410f9d32c4e38b 264 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 261 4.9E-113 T 11-11-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 vm_RS12220 cff246f0e1bbf922e3410f9d32c4e38b 264 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 258 1.1E-108 T 11-11-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 vm_RS12220 cff246f0e1bbf922e3410f9d32c4e38b 264 SUPERFAMILY SSF51621 3 262 1.88E-105 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS12220 cff246f0e1bbf922e3410f9d32c4e38b 264 PIRSF PIRSF000388 1 264 5.7E-102 T 11-11-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 vm_RS12220 cff246f0e1bbf922e3410f9d32c4e38b 264 Gene3D G3DSA:3.20.20.60 1 262 8.3E-111 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS12220 cff246f0e1bbf922e3410f9d32c4e38b 264 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 263 41.534 T 11-11-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 vm_RS13350 1c363bc7b2f16a40f943d4e2ddb75054 841 SMART SM00491 349 476 7.9E-5 T 11-11-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 vm_RS13350 1c363bc7b2f16a40f943d4e2ddb75054 841 Pfam PF04851 Type III restriction enzyme, res subunit 35 165 8.5E-11 T 11-11-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 vm_RS13350 1c363bc7b2f16a40f943d4e2ddb75054 841 SUPERFAMILY SSF52540 33 165 2.13E-14 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13350 1c363bc7b2f16a40f943d4e2ddb75054 841 Pfam PF13307 Helicase C-terminal domain 378 470 1.8E-7 T 11-11-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 vm_RS13350 1c363bc7b2f16a40f943d4e2ddb75054 841 Gene3D G3DSA:3.40.50.300 23 163 5.6E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13350 1c363bc7b2f16a40f943d4e2ddb75054 841 SMART SM00487 31 320 3.3E-9 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS13560 7f1152a6ace40b488240953fc0282947 594 Pfam PF11846 Virulence factor membrane-bound polymerase, C-terminal 388 577 3.9E-63 T 11-11-2016 IPR021797 Virulence factor membrane-bound polymerase, C-terminal vm_RS13560 7f1152a6ace40b488240953fc0282947 594 Pfam PF04932 O-Antigen ligase 221 367 4.4E-13 T 11-11-2016 IPR007016 O-antigen ligase-related vm_RS13560 7f1152a6ace40b488240953fc0282947 594 Pfam PF15864 Protein glycosylation ligase 174 199 1.7E-11 T 11-11-2016 IPR031726 Protein glycosylation ligase domain vm_RS12620 cbbde9f50c7da5579d30c08142f23484 413 Pfam PF13356 Domain of unknown function (DUF4102) 8 94 9.6E-18 T 11-11-2016 IPR025166 Domain of unknown function DUF4102 vm_RS12620 cbbde9f50c7da5579d30c08142f23484 413 Gene3D G3DSA:1.10.150.130 105 202 4.7E-21 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal vm_RS12620 cbbde9f50c7da5579d30c08142f23484 413 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 106 155 1.8E-11 T 11-11-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 vm_RS12620 cbbde9f50c7da5579d30c08142f23484 413 Gene3D G3DSA:1.10.443.10 215 384 3.7E-23 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS12620 cbbde9f50c7da5579d30c08142f23484 413 SUPERFAMILY SSF56349 105 386 2.24E-59 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS12620 cbbde9f50c7da5579d30c08142f23484 413 Pfam PF00589 Phage integrase family 214 376 1.3E-26 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS07405 eab38d92e3514945d1dd75462b2f3d20 353 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 6 350 5.5E-158 T 11-11-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 vm_RS07405 eab38d92e3514945d1dd75462b2f3d20 353 Pfam PF00793 DAHP synthetase I family 44 338 1.2E-97 T 11-11-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 vm_RS07405 eab38d92e3514945d1dd75462b2f3d20 353 SUPERFAMILY SSF51569 8 349 3.15E-130 T 11-11-2016 vm_RS07405 eab38d92e3514945d1dd75462b2f3d20 353 PIRSF PIRSF001361 1 353 7.5E-156 T 11-11-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 vm_RS07405 eab38d92e3514945d1dd75462b2f3d20 353 Gene3D G3DSA:3.20.20.70 10 352 2.3E-146 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS08480 10e6a7882d5d36462f8069aa811326bf 522 Pfam PF01471 Putative peptidoglycan binding domain 230 263 1.2E-6 T 11-11-2016 IPR002477 Peptidoglycan binding-like vm_RS08480 10e6a7882d5d36462f8069aa811326bf 522 SUPERFAMILY SSF141523 288 343 4.71E-18 T 11-11-2016 vm_RS08480 10e6a7882d5d36462f8069aa811326bf 522 SUPERFAMILY SSF141523 399 449 4.71E-18 T 11-11-2016 vm_RS08480 10e6a7882d5d36462f8069aa811326bf 522 SUPERFAMILY SSF47090 193 270 6.59E-10 T 11-11-2016 IPR002477 Peptidoglycan binding-like vm_RS08480 10e6a7882d5d36462f8069aa811326bf 522 Pfam PF03734 L,D-transpeptidase catalytic domain 290 459 3.2E-29 T 11-11-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 vm_RS08480 10e6a7882d5d36462f8069aa811326bf 522 Gene3D G3DSA:2.40.440.10 401 449 1.5E-11 T 11-11-2016 vm_RS08480 10e6a7882d5d36462f8069aa811326bf 522 Gene3D G3DSA:2.40.440.10 287 334 1.5E-11 T 11-11-2016 vm_RS08480 10e6a7882d5d36462f8069aa811326bf 522 Gene3D G3DSA:1.20.141.10 237 286 2.6E-10 T 11-11-2016 vm_RS06415 3d599072df0c1959e56f80b52ad47bc0 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.3E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS06415 3d599072df0c1959e56f80b52ad47bc0 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.3E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS06415 3d599072df0c1959e56f80b52ad47bc0 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.3E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS06415 3d599072df0c1959e56f80b52ad47bc0 305 SUPERFAMILY SSF46785 1 112 4.19E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS06415 3d599072df0c1959e56f80b52ad47bc0 305 Gene3D G3DSA:3.40.190.10 173 260 8.4E-19 T 11-11-2016 vm_RS06415 3d599072df0c1959e56f80b52ad47bc0 305 Gene3D G3DSA:3.40.190.10 89 172 1.6E-10 T 11-11-2016 vm_RS06415 3d599072df0c1959e56f80b52ad47bc0 305 SUPERFAMILY SSF53850 89 296 9.59E-39 T 11-11-2016 vm_RS06415 3d599072df0c1959e56f80b52ad47bc0 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 9.5E-18 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS06415 3d599072df0c1959e56f80b52ad47bc0 305 Pfam PF03466 LysR substrate binding domain 89 293 4.3E-41 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS06415 3d599072df0c1959e56f80b52ad47bc0 305 Gene3D G3DSA:1.10.10.10 1 87 5.9E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS10010 60db945aeea8d4e17e6162731de0fe95 278 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 1.7E-20 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS10010 60db945aeea8d4e17e6162731de0fe95 278 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.0E-10 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS10010 60db945aeea8d4e17e6162731de0fe95 278 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.0E-10 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS10010 60db945aeea8d4e17e6162731de0fe95 278 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.0E-10 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS10010 60db945aeea8d4e17e6162731de0fe95 278 SUPERFAMILY SSF53850 85 273 1.7E-28 T 11-11-2016 vm_RS10010 60db945aeea8d4e17e6162731de0fe95 278 Gene3D G3DSA:1.10.10.10 1 80 6.2E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS10010 60db945aeea8d4e17e6162731de0fe95 278 Pfam PF03466 LysR substrate binding domain 111 275 3.0E-16 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS10010 60db945aeea8d4e17e6162731de0fe95 278 Gene3D G3DSA:3.40.190.10 102 155 5.9E-8 T 11-11-2016 vm_RS10010 60db945aeea8d4e17e6162731de0fe95 278 Gene3D G3DSA:3.40.190.10 262 274 5.9E-8 T 11-11-2016 vm_RS10010 60db945aeea8d4e17e6162731de0fe95 278 Gene3D G3DSA:3.40.190.10 156 244 1.0E-16 T 11-11-2016 vm_RS10010 60db945aeea8d4e17e6162731de0fe95 278 SUPERFAMILY SSF46785 1 81 1.28E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS08960 76fe596b7db966f583d2c646665bccda 206 Pfam PF01300 Telomere recombination 23 198 9.3E-44 T 11-11-2016 IPR006070 YrdC-like domain GO:0003725 vm_RS08960 76fe596b7db966f583d2c646665bccda 206 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 7 200 1.1E-70 T 11-11-2016 IPR006070 YrdC-like domain GO:0003725 vm_RS08960 76fe596b7db966f583d2c646665bccda 206 Gene3D G3DSA:3.90.870.10 2 202 6.3E-63 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain vm_RS08960 76fe596b7db966f583d2c646665bccda 206 SUPERFAMILY SSF55821 1 203 3.66E-63 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain vm_RS13465 06d27a0a15aa0844e491457f0baeeb6b 256 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 3 23 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS13465 06d27a0a15aa0844e491457f0baeeb6b 256 Pfam PF07963 Prokaryotic N-terminal methylation motif 3 21 7.0E-6 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS13465 06d27a0a15aa0844e491457f0baeeb6b 256 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 3 23 1.8E-5 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS08650 42bdf19278d1f5e72eda1884c57e8418 331 SUPERFAMILY SSF81345 6 327 1.7E-81 T 11-11-2016 IPR029022 ABC transporter, BtuC-like vm_RS08650 42bdf19278d1f5e72eda1884c57e8418 331 Gene3D G3DSA:1.10.3470.10 8 327 6.9E-96 T 11-11-2016 IPR029022 ABC transporter, BtuC-like vm_RS08650 42bdf19278d1f5e72eda1884c57e8418 331 Pfam PF01032 FecCD transport family 24 326 2.2E-81 T 11-11-2016 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 vm_RS08650 42bdf19278d1f5e72eda1884c57e8418 331 Hamap MF_01004 Vitamin B12 import system permease protein BtuC [btuC]. 3 329 31.123 T 11-11-2016 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC GO:0015889|GO:0016020 vm_RS02600 08100ab9c59b7de3d8dff27202da156a 323 Gene3D G3DSA:3.30.70.1400 29 114 1.1E-31 T 11-11-2016 vm_RS02600 08100ab9c59b7de3d8dff27202da156a 323 SUPERFAMILY SSF103025 15 235 6.44E-56 T 11-11-2016 vm_RS02600 08100ab9c59b7de3d8dff27202da156a 323 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 181 245 6.7E-25 T 11-11-2016 IPR017703 YgfZ/GcvT conserved site vm_RS02600 08100ab9c59b7de3d8dff27202da156a 323 SUPERFAMILY SSF101790 237 320 4.12E-19 T 11-11-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain vm_RS02600 08100ab9c59b7de3d8dff27202da156a 323 Hamap MF_01175 tRNA-modifying protein YgfZ [ygfZ]. 1 317 43.228 T 11-11-2016 IPR023758 tRNA-modifying protein YgfZ GO:0005542|GO:0009451 vm_RS02600 08100ab9c59b7de3d8dff27202da156a 323 Pfam PF01571 Aminomethyltransferase folate-binding domain 26 141 3.1E-5 T 11-11-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal vm_RS13040 480b9c2355ba2ef14125004f3dc9a586 265 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 215 231 1.7E-10 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS13040 480b9c2355ba2ef14125004f3dc9a586 265 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 231 243 1.7E-10 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS13040 480b9c2355ba2ef14125004f3dc9a586 265 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 201 215 1.7E-10 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS13040 480b9c2355ba2ef14125004f3dc9a586 265 Pfam PF00196 Bacterial regulatory proteins, luxR family 200 254 1.6E-15 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS13040 480b9c2355ba2ef14125004f3dc9a586 265 SMART SM00421 198 255 3.1E-18 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS13040 480b9c2355ba2ef14125004f3dc9a586 265 Gene3D G3DSA:1.10.10.10 199 258 4.8E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS13040 480b9c2355ba2ef14125004f3dc9a586 265 SUPERFAMILY SSF46894 186 258 4.76E-18 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 Pfam PF02914 Bacteriophage Mu transposase 261 474 5.3E-109 T 11-11-2016 IPR004189 Bacteriophage Mu, transposase GO:0003677|GO:0004803|GO:0006313|GO:0015074 vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 SUPERFAMILY SSF46955 1 70 1.56E-12 T 11-11-2016 IPR009061 Putative DNA-binding domain vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 Gene3D G3DSA:2.30.30.130 494 561 2.8E-24 T 11-11-2016 IPR009004 Transposase, Mu, C-terminal vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 Pfam PF09039 Mu DNA binding, I gamma subdomain 148 258 1.3E-40 T 11-11-2016 IPR015126 Mu DNA binding, I gamma subdomain vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 SUPERFAMILY SSF53098 262 481 1.8E-73 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 Gene3D G3DSA:1.10.10.60 77 169 8.8E-35 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 SUPERFAMILY SSF46689 177 249 1.51E-24 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 SUPERFAMILY SSF46689 73 169 2.81E-30 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 Gene3D G3DSA:1.10.10.10 1 72 3.1E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 Gene3D G3DSA:1.10.10.60 177 248 2.3E-30 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 Pfam PF02316 Mu DNA-binding domain 7 114 4.8E-8 T 11-11-2016 IPR003314 Mu-type HTH domain GO:0003677 vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 Gene3D G3DSA:3.30.420.10 251 488 2.2E-81 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 Pfam PF09299 Mu transposase, C-terminal 489 558 4.6E-14 T 11-11-2016 IPR015378 Transposase-like, Mu, C-terminal vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 ProDom PD223702 DNA TRANSPOSASE DNA-BINDING TRANSPOSABLE INTEGRATION ELEMENT RECOMBINATION TRANSPOSASE EXCISION TRANSPOSITION 267 481 1.0E-98 T 11-11-2016 vm_RS10905 78b31446e2c77517f833c3a041275c5b 667 SUPERFAMILY SSF50610 484 561 6.02E-20 T 11-11-2016 IPR009004 Transposase, Mu, C-terminal vm_RS15050 fd740e4b52dff455478d83b92b5706a9 85 Pfam PF01809 Haemolytic domain 10 75 1.2E-29 T 11-11-2016 IPR002696 Putative membrane protein insertion efficiency factor vm_RS15050 fd740e4b52dff455478d83b92b5706a9 85 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 13 82 1.1E-32 T 11-11-2016 IPR002696 Putative membrane protein insertion efficiency factor vm_RS15050 fd740e4b52dff455478d83b92b5706a9 85 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 23 75 1.0E-25 T 11-11-2016 IPR002696 Putative membrane protein insertion efficiency factor vm_RS15050 fd740e4b52dff455478d83b92b5706a9 85 SMART SM01234 8 75 8.0E-44 T 11-11-2016 IPR002696 Putative membrane protein insertion efficiency factor vm_RS15050 fd740e4b52dff455478d83b92b5706a9 85 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 8 76 24.888 T 11-11-2016 IPR002696 Putative membrane protein insertion efficiency factor vm_RS06845 ccc1cc87fd9c79988499f06154629ff0 437 SUPERFAMILY SSF56954 6 421 1.14E-86 T 11-11-2016 vm_RS06845 ccc1cc87fd9c79988499f06154629ff0 437 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 21 432 3.0E-134 T 11-11-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 vm_RS06845 ccc1cc87fd9c79988499f06154629ff0 437 Gene3D G3DSA:1.20.1600.10 20 421 8.4E-67 T 11-11-2016 vm_RS06845 ccc1cc87fd9c79988499f06154629ff0 437 Pfam PF02321 Outer membrane efflux protein 24 213 4.7E-26 T 11-11-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 vm_RS06845 ccc1cc87fd9c79988499f06154629ff0 437 Pfam PF02321 Outer membrane efflux protein 233 415 1.5E-29 T 11-11-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 SUPERFAMILY SSF48113 432 723 1.7E-114 T 11-11-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 Gene3D G3DSA:1.10.520.10 239 251 1.7E-78 T 11-11-2016 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 Gene3D G3DSA:1.10.520.10 47 201 1.7E-78 T 11-11-2016 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 Gene3D G3DSA:1.10.520.10 702 723 3.3E-57 T 11-11-2016 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 Gene3D G3DSA:1.10.520.10 434 578 3.3E-57 T 11-11-2016 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 Hamap MF_01961 Catalase-peroxidase [katG]. 7 724 40.538 T 11-11-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 Gene3D G3DSA:1.10.420.10 579 699 9.5E-46 T 11-11-2016 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 Pfam PF00141 Peroxidase 406 698 2.5E-35 T 11-11-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 Pfam PF00141 Peroxidase 70 397 5.7E-50 T 11-11-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 Gene3D G3DSA:1.10.420.10 310 409 1.3E-45 T 11-11-2016 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 Gene3D G3DSA:1.10.420.10 252 274 1.3E-45 T 11-11-2016 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 SUPERFAMILY SSF48113 18 431 5.45E-154 T 11-11-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 478 504 2.5E-54 T 11-11-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 67 92 2.5E-54 T 11-11-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 26 48 2.5E-54 T 11-11-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 267 290 2.5E-54 T 11-11-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 52 65 2.5E-54 T 11-11-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 11 724 0.0 T 11-11-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 ProSitePatterns PS00436 Peroxidases active site signature. 90 101 - T 11-11-2016 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 PRINTS PR00458 Haem peroxidase superfamily signature 318 333 2.2E-18 T 11-11-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 PRINTS PR00458 Haem peroxidase superfamily signature 150 167 2.2E-18 T 11-11-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 PRINTS PR00458 Haem peroxidase superfamily signature 168 180 2.2E-18 T 11-11-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 PRINTS PR00458 Haem peroxidase superfamily signature 90 104 2.2E-18 T 11-11-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 vm_RS07145 2a6ca80b2218baec6b36daf8c49f5429 724 PRINTS PR00458 Haem peroxidase superfamily signature 259 274 2.2E-18 T 11-11-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 Gene3D G3DSA:3.30.70.260 796 859 2.6E-8 T 11-11-2016 vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 SUPERFAMILY SSF55021 689 762 1.49E-7 T 11-11-2016 vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 Pfam PF01966 HD domain 452 584 2.6E-13 T 11-11-2016 IPR006674 HD domain vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 SUPERFAMILY SSF81301 35 172 1.34E-18 T 11-11-2016 vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 876 334.803 T 11-11-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 SUPERFAMILY SSF81593 192 310 1.33E-9 T 11-11-2016 vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 PIRSF PIRSF006288 6 875 0.0 T 11-11-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 Pfam PF01909 Nucleotidyltransferase domain 57 108 1.3E-7 T 11-11-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 SUPERFAMILY SSF109604 418 553 5.02E-15 T 11-11-2016 vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 28 869 0.0 T 11-11-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 SMART SM00471 447 594 1.0E-10 T 11-11-2016 IPR003607 HD/PDEase domain vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 Pfam PF08335 GlnD PII-uridylyltransferase 176 314 7.3E-35 T 11-11-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 SUPERFAMILY SSF55021 796 860 1.83E-8 T 11-11-2016 vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 Gene3D G3DSA:1.10.3210.10 421 610 1.9E-26 T 11-11-2016 IPR006674 HD domain vm_RS03595 c3d5043a08b8088736ad7e0245eb0ea0 876 Gene3D G3DSA:3.30.460.10 71 161 1.5E-8 T 11-11-2016 vm_RS14920 df6a2d047bbaba6b294eb10effae24b2 194 ProSitePatterns PS00397 Site-specific recombinases active site. 7 15 - T 11-11-2016 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 vm_RS14920 df6a2d047bbaba6b294eb10effae24b2 194 ProSitePatterns PS00398 Site-specific recombinases signature 2. 57 69 - T 11-11-2016 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 vm_RS14920 df6a2d047bbaba6b294eb10effae24b2 194 Pfam PF02796 Helix-turn-helix domain of resolvase 140 179 1.3E-12 T 11-11-2016 IPR006120 Resolvase, HTH domain GO:0000150|GO:0003677|GO:0006310 vm_RS14920 df6a2d047bbaba6b294eb10effae24b2 194 Gene3D G3DSA:3.40.50.1390 4 122 8.0E-45 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 vm_RS14920 df6a2d047bbaba6b294eb10effae24b2 194 SUPERFAMILY SSF53041 4 137 8.24E-46 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 vm_RS14920 df6a2d047bbaba6b294eb10effae24b2 194 SUPERFAMILY SSF46689 140 181 1.33E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS14920 df6a2d047bbaba6b294eb10effae24b2 194 Pfam PF00239 Resolvase, N terminal domain 5 137 3.3E-46 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 vm_RS14920 df6a2d047bbaba6b294eb10effae24b2 194 Gene3D G3DSA:1.10.10.60 140 181 9.2E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS14920 df6a2d047bbaba6b294eb10effae24b2 194 SMART SM00857 4 138 7.6E-62 T 11-11-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 193 208 2.2E-7 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 3 27 2.2E-7 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 320 335 2.2E-7 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 355 372 2.2E-7 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 117 140 2.2E-7 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 Pfam PF01578 Cytochrome C assembly protein 94 299 6.5E-43 T 11-11-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 319 627 6.4E-53 T 11-11-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 314 333 6.2E-75 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 214 240 6.2E-75 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 163 185 6.2E-75 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 248 268 6.2E-75 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 278 298 6.2E-75 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 136 153 6.2E-75 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 85 111 6.2E-75 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 298 314 6.2E-75 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08555 b0bc0ace79b3aeaada90b0253b5bba51 644 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 58 630 1.1E-173 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS08015 1456d6c1c89572c3f1b1244129a2c723 273 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 262 2.4E-67 T 11-11-2016 IPR023214 HAD-like domain vm_RS08015 1456d6c1c89572c3f1b1244129a2c723 273 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 262 4.8E-64 T 11-11-2016 IPR000150 Cof protein GO:0016787 vm_RS08015 1456d6c1c89572c3f1b1244129a2c723 273 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 235 3.7E-26 T 11-11-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 vm_RS08015 1456d6c1c89572c3f1b1244129a2c723 273 Gene3D G3DSA:3.30.1240.10 87 180 2.5E-32 T 11-11-2016 vm_RS08015 1456d6c1c89572c3f1b1244129a2c723 273 SUPERFAMILY SSF56784 1 265 3.02E-75 T 11-11-2016 IPR023214 HAD-like domain vm_RS08015 1456d6c1c89572c3f1b1244129a2c723 273 ProSitePatterns PS01229 Hypothetical cof family signature 2. 216 238 - T 11-11-2016 vm_RS08015 1456d6c1c89572c3f1b1244129a2c723 273 ProSitePatterns PS01228 Hypothetical cof family signature 1. 4 15 - T 11-11-2016 IPR000150 Cof protein GO:0016787 vm_RS08015 1456d6c1c89572c3f1b1244129a2c723 273 Gene3D G3DSA:3.40.50.1000 181 267 3.9E-57 T 11-11-2016 IPR023214 HAD-like domain vm_RS08015 1456d6c1c89572c3f1b1244129a2c723 273 Gene3D G3DSA:3.40.50.1000 1 75 3.9E-57 T 11-11-2016 IPR023214 HAD-like domain vm_RS04080 70c9f923610c17c5c44def632e42279f 417 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 319 339 - T 11-11-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 vm_RS04080 70c9f923610c17c5c44def632e42279f 417 Pfam PF00860 Permease family 3 371 4.2E-92 T 11-11-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 vm_RS04080 70c9f923610c17c5c44def632e42279f 417 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 3 395 4.8E-112 T 11-11-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 3 27 1.2E-128 T 11-11-2016 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 85 103 1.2E-128 T 11-11-2016 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 148 167 1.2E-128 T 11-11-2016 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 104 121 1.2E-128 T 11-11-2016 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 45 63 1.2E-128 T 11-11-2016 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 28 44 1.2E-128 T 11-11-2016 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 66 84 1.2E-128 T 11-11-2016 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 252 271 1.2E-128 T 11-11-2016 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 272 292 1.2E-128 T 11-11-2016 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 234 251 1.2E-128 T 11-11-2016 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 123 145 1.2E-128 T 11-11-2016 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 205 231 1.2E-128 T 11-11-2016 vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 SUPERFAMILY SSF103088 158 288 9.16E-25 T 11-11-2016 IPR006665 OmpA-like domain vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 Pfam PF00691 OmpA family 191 283 1.1E-16 T 11-11-2016 IPR006665 OmpA-like domain vm_RS10110 fb4e84a328c4f50b29fe1f47c005d2c3 294 Gene3D G3DSA:3.30.1330.60 191 289 1.5E-25 T 11-11-2016 IPR006665 OmpA-like domain vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 SUPERFAMILY SSF56784 3 157 3.1E-38 T 11-11-2016 IPR023214 HAD-like domain vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 Pfam PF08645 Polynucleotide kinase 3 phosphatase 6 132 2.3E-5 T 11-11-2016 IPR013954 Polynucleotide kinase 3 phosphatase Reactome: R-HSA-5649702 vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 169 357 38.045 T 11-11-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 SUPERFAMILY SSF54211 254 344 1.26E-31 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 6 151 1.2E-27 T 11-11-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 SUPERFAMILY SSF54211 169 253 4.17E-33 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 Gene3D G3DSA:3.40.50.1000 3 153 1.2E-40 T 11-11-2016 IPR023214 HAD-like domain vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 198 339 1.8E-66 T 11-11-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 Gene3D G3DSA:3.30.230.40 259 357 4.2E-32 T 11-11-2016 vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 321 333 - T 11-11-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 228 241 - T 11-11-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 Hamap MF_01022 Histidine biosynthesis bifunctional protein HisB [hisB]. 4 357 54.068 T 11-11-2016 IPR020566 Histidine biosynthesis bifunctional protein HisB GO:0000105|GO:0004401|GO:0004424 KEGG: 00340+4.2.1.19+3.1.3.15 vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 Gene3D G3DSA:3.30.230.40 169 255 5.9E-39 T 11-11-2016 vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 6 147 4.4E-46 T 11-11-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 vm_RS09185 d25227a2c8b8863e8ceba6baddc2b652 357 TIGRFAM TIGR01261 hisB_Nterm: histidinol-phosphatase 5 164 4.6E-79 T 11-11-2016 IPR005954 Histidinol-phosphatase GO:0000105|GO:0004401|GO:0004424|GO:0005737 KEGG: 00340+4.2.1.19+3.1.3.15 vm_RS02665 bdb386b4873cad582ab69363e06cc17e 241 Pfam PF02565 Recombination protein O C terminal 85 226 9.1E-25 T 11-11-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 vm_RS02665 bdb386b4873cad582ab69363e06cc17e 241 Gene3D G3DSA:2.40.50.140 7 76 2.8E-9 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS02665 bdb386b4873cad582ab69363e06cc17e 241 Pfam PF11967 Recombination protein O N terminal 5 77 3.1E-24 T 11-11-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal vm_RS02665 bdb386b4873cad582ab69363e06cc17e 241 TIGRFAM TIGR00613 reco: DNA repair protein RecO 7 230 1.5E-42 T 11-11-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 vm_RS02665 bdb386b4873cad582ab69363e06cc17e 241 Hamap MF_00201 DNA repair protein RecO [recO]. 2 231 23.333 T 11-11-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 vm_RS02665 bdb386b4873cad582ab69363e06cc17e 241 SUPERFAMILY SSF50249 6 76 1.35E-15 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS02665 bdb386b4873cad582ab69363e06cc17e 241 SUPERFAMILY SSF57863 86 159 1.94E-13 T 11-11-2016 vm_RS14530 cb74fb2153d32fba2402f1b7fba1c73d 300 ProSitePatterns PS01272 Glucokinase regulatory protein family signature. 187 204 - T 11-11-2016 IPR005486 Glucokinase regulatory protein, conserved site KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126|Reactome: R-HSA-170822|Reactome: R-HSA-5619107 vm_RS14530 cb74fb2153d32fba2402f1b7fba1c73d 300 SUPERFAMILY SSF53697 8 250 8.9E-70 T 11-11-2016 vm_RS14530 cb74fb2153d32fba2402f1b7fba1c73d 300 TIGRFAM TIGR00274 TIGR00274: N-acetylmuramic acid 6-phosphate etherase 8 297 2.7E-129 T 11-11-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 vm_RS14530 cb74fb2153d32fba2402f1b7fba1c73d 300 Hamap MF_00068 N-acetylmuramic acid 6-phosphate etherase [murQ]. 4 297 42.526 T 11-11-2016 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ GO:0016835|GO:0046348 KEGG: 00030+4.2.1.12|KEGG: 00520+4.2.1.126 vm_RS14530 cb74fb2153d32fba2402f1b7fba1c73d 300 Pfam PF01380 SIS domain 123 212 1.8E-9 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 vm_RS14530 cb74fb2153d32fba2402f1b7fba1c73d 300 Gene3D G3DSA:3.40.50.10490 6 251 4.0E-90 T 11-11-2016 vm_RS09575 198bbf46f857db64b870fbf823090e8a 142 Pfam PF12802 MarR family 30 91 3.6E-11 T 11-11-2016 vm_RS09575 198bbf46f857db64b870fbf823090e8a 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 51 67 1.6E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS09575 198bbf46f857db64b870fbf823090e8a 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 87 103 1.6E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS09575 198bbf46f857db64b870fbf823090e8a 142 PRINTS PR00598 Bacterial regulatory protein MarR family signature 68 83 1.6E-7 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS09575 198bbf46f857db64b870fbf823090e8a 142 Gene3D G3DSA:1.10.10.10 5 138 2.7E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09575 198bbf46f857db64b870fbf823090e8a 142 SUPERFAMILY SSF46785 5 124 1.3E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09575 198bbf46f857db64b870fbf823090e8a 142 SMART SM00347 25 127 2.3E-16 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS02655 461171c71fab5a8d5f97c23b38b07aa8 225 Pfam PF00035 Double-stranded RNA binding motif 155 222 5.2E-16 T 11-11-2016 IPR014720 Double-stranded RNA-binding domain vm_RS02655 461171c71fab5a8d5f97c23b38b07aa8 225 Gene3D G3DSA:1.10.1520.10 5 144 5.0E-48 T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 vm_RS02655 461171c71fab5a8d5f97c23b38b07aa8 225 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 vm_RS02655 461171c71fab5a8d5f97c23b38b07aa8 225 SMART SM00535 20 148 1.3E-58 T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 vm_RS02655 461171c71fab5a8d5f97c23b38b07aa8 225 SUPERFAMILY SSF54768 108 222 3.61E-29 T 11-11-2016 vm_RS02655 461171c71fab5a8d5f97c23b38b07aa8 225 Gene3D G3DSA:3.30.160.20 152 223 8.2E-28 T 11-11-2016 IPR014720 Double-stranded RNA-binding domain vm_RS02655 461171c71fab5a8d5f97c23b38b07aa8 225 SMART SM00358 155 223 3.1E-22 T 11-11-2016 IPR014720 Double-stranded RNA-binding domain vm_RS02655 461171c71fab5a8d5f97c23b38b07aa8 225 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 30.218 T 11-11-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 vm_RS02655 461171c71fab5a8d5f97c23b38b07aa8 225 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 9 222 2.3E-75 T 11-11-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 vm_RS02655 461171c71fab5a8d5f97c23b38b07aa8 225 SUPERFAMILY SSF69065 6 158 3.31E-51 T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 vm_RS02655 461171c71fab5a8d5f97c23b38b07aa8 225 Pfam PF14622 Ribonuclease-III-like 19 139 8.3E-35 T 11-11-2016 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 vm_RS09385 86f6810466ab79675ed519bfe5a893c4 300 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 298 1.7E-26 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS09385 86f6810466ab79675ed519bfe5a893c4 300 Gene3D G3DSA:1.10.3720.10 96 297 2.9E-25 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS09385 86f6810466ab79675ed519bfe5a893c4 300 SUPERFAMILY SSF161098 96 281 3.01E-26 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS09385 86f6810466ab79675ed519bfe5a893c4 300 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 24 76 1.2E-14 T 11-11-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain vm_RS09840 1e5d0c4232d7d3392bb43e8fec2fe3af 697 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 556 694 7.1E-50 T 11-11-2016 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS09840 1e5d0c4232d7d3392bb43e8fec2fe3af 697 Gene3D G3DSA:1.10.8.60 167 242 3.1E-31 T 11-11-2016 vm_RS09840 1e5d0c4232d7d3392bb43e8fec2fe3af 697 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 233 358 9.0E-31 T 11-11-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 vm_RS09840 1e5d0c4232d7d3392bb43e8fec2fe3af 697 SUPERFAMILY SSF52540 32 222 1.94E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09840 1e5d0c4232d7d3392bb43e8fec2fe3af 697 Pfam PF12168 DNA polymerase III subunits tau domain IV DnaB-binding 483 554 1.4E-19 T 11-11-2016 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS09840 1e5d0c4232d7d3392bb43e8fec2fe3af 697 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.9E-44 T 11-11-2016 vm_RS09840 1e5d0c4232d7d3392bb43e8fec2fe3af 697 Gene3D G3DSA:1.20.272.10 243 360 5.8E-45 T 11-11-2016 vm_RS09840 1e5d0c4232d7d3392bb43e8fec2fe3af 697 Gene3D G3DSA:3.40.50.300 15 166 8.4E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09840 1e5d0c4232d7d3392bb43e8fec2fe3af 697 SUPERFAMILY SSF48019 243 361 6.97E-33 T 11-11-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 vm_RS09840 1e5d0c4232d7d3392bb43e8fec2fe3af 697 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 355 5.5E-132 T 11-11-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 vm_RS09840 1e5d0c4232d7d3392bb43e8fec2fe3af 697 SMART SM00382 37 179 9.4E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS04325 350ea643a192dfd71a1faee58172d0cb 136 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 54 128 3.2E-33 T 11-11-2016 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 vm_RS04325 350ea643a192dfd71a1faee58172d0cb 136 Gene3D G3DSA:2.30.330.10 47 136 7.2E-38 T 11-11-2016 vm_RS04325 350ea643a192dfd71a1faee58172d0cb 136 PRINTS PR00956 Flagellar motor switch protein FliN signature 73 89 1.1E-27 T 11-11-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 vm_RS04325 350ea643a192dfd71a1faee58172d0cb 136 PRINTS PR00956 Flagellar motor switch protein FliN signature 56 72 1.1E-27 T 11-11-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 vm_RS04325 350ea643a192dfd71a1faee58172d0cb 136 PRINTS PR00956 Flagellar motor switch protein FliN signature 102 117 1.1E-27 T 11-11-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 vm_RS04325 350ea643a192dfd71a1faee58172d0cb 136 PRINTS PR00956 Flagellar motor switch protein FliN signature 89 102 1.1E-27 T 11-11-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 vm_RS04325 350ea643a192dfd71a1faee58172d0cb 136 SUPERFAMILY SSF101801 54 134 6.02E-25 T 11-11-2016 IPR001543 Surface presentation of antigen (SpoA) vm_RS04325 350ea643a192dfd71a1faee58172d0cb 136 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 56 126 1.8E-24 T 11-11-2016 IPR001543 Surface presentation of antigen (SpoA) vm_RS05585 879b90a05d1f3d285f72b04f8efbba1b 463 SUPERFAMILY SSF48452 66 160 9.28E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS05585 879b90a05d1f3d285f72b04f8efbba1b 463 SUPERFAMILY SSF48452 204 259 9.28E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS05585 879b90a05d1f3d285f72b04f8efbba1b 463 Gene3D G3DSA:1.25.40.10 207 264 2.8E-6 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS05585 879b90a05d1f3d285f72b04f8efbba1b 463 Gene3D G3DSA:1.25.40.10 67 99 2.8E-6 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS05585 879b90a05d1f3d285f72b04f8efbba1b 463 Gene3D G3DSA:1.25.40.10 131 163 2.8E-6 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS02580 2a79fdb51047f34f339fc00806b61270 191 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 5 189 34.728 T 11-11-2016 IPR011978 Uncharacterised protein family UPF0149 vm_RS02580 2a79fdb51047f34f339fc00806b61270 191 SUPERFAMILY SSF101327 7 178 1.57E-40 T 11-11-2016 IPR011978 Uncharacterised protein family UPF0149 vm_RS02580 2a79fdb51047f34f339fc00806b61270 191 Pfam PF03695 Uncharacterised protein family (UPF0149) 12 179 2.6E-32 T 11-11-2016 IPR011978 Uncharacterised protein family UPF0149 vm_RS11520 64f7128527dd6039c063f9da274cc33d 258 SUPERFAMILY SSF52540 35 222 1.3E-31 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11520 64f7128527dd6039c063f9da274cc33d 258 Gene3D G3DSA:3.40.50.300 3 241 6.7E-110 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11520 64f7128527dd6039c063f9da274cc33d 258 PIRSF PIRSF028756 1 258 2.0E-132 T 11-11-2016 IPR016898 Polyphosphate kinase 2 vm_RS11520 64f7128527dd6039c063f9da274cc33d 258 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 3 229 2.1E-114 T 11-11-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 vm_RS11520 64f7128527dd6039c063f9da274cc33d 258 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 3 228 4.1E-114 T 11-11-2016 IPR022488 Polyphosphate kinase-2-related vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 SMART SM00191 153 219 7.7 T 11-11-2016 IPR013519 Integrin alpha beta-propellor Reactome: R-HSA-216083 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 SMART SM00191 449 515 14.0 T 11-11-2016 IPR013519 Integrin alpha beta-propellor Reactome: R-HSA-216083 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 SMART SM00191 301 367 0.13 T 11-11-2016 IPR013519 Integrin alpha beta-propellor Reactome: R-HSA-216083 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 SMART SM00191 375 443 5.3 T 11-11-2016 IPR013519 Integrin alpha beta-propellor Reactome: R-HSA-216083 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 SMART SM00191 523 591 3.9 T 11-11-2016 IPR013519 Integrin alpha beta-propellor Reactome: R-HSA-216083 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 SMART SM00191 227 295 12.0 T 11-11-2016 IPR013519 Integrin alpha beta-propellor Reactome: R-HSA-216083 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 Pfam PF14312 FG-GAP repeat 362 428 1.4E-6 T 11-11-2016 IPR013517 FG-GAP repeat Reactome: R-HSA-216083 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 Pfam PF14312 FG-GAP repeat 148 206 2.7E-6 T 11-11-2016 IPR013517 FG-GAP repeat Reactome: R-HSA-216083 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 Pfam PF14312 FG-GAP repeat 436 502 1.8E-5 T 11-11-2016 IPR013517 FG-GAP repeat Reactome: R-HSA-216083 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 Pfam PF14312 FG-GAP repeat 214 280 1.3E-8 T 11-11-2016 IPR013517 FG-GAP repeat Reactome: R-HSA-216083 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 Pfam PF14312 FG-GAP repeat 584 649 1.9E-6 T 11-11-2016 IPR013517 FG-GAP repeat Reactome: R-HSA-216083 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 Pfam PF14312 FG-GAP repeat 288 354 1.2E-9 T 11-11-2016 IPR013517 FG-GAP repeat Reactome: R-HSA-216083 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 SUPERFAMILY SSF69318 192 535 3.92E-8 T 11-11-2016 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 Gene3D G3DSA:2.130.10.130 324 471 4.5E-7 T 11-11-2016 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 Gene3D G3DSA:2.130.10.130 477 650 1.5E-4 T 11-11-2016 vm_RS06745 9eea1c12e40071dbe6fe91c945caa9ca 650 Gene3D G3DSA:2.130.10.130 106 323 4.1E-10 T 11-11-2016 vm_RS12045 2d499efb123cf2478c5bc47ddee7ba36 431 Gene3D G3DSA:2.70.70.10 251 392 3.8E-44 T 11-11-2016 vm_RS12045 2d499efb123cf2478c5bc47ddee7ba36 431 Pfam PF08525 Opacity-associated protein A N-terminal motif 4 31 8.1E-6 T 11-11-2016 IPR013731 Opacity-associated protein A, N-terminal vm_RS12045 2d499efb123cf2478c5bc47ddee7ba36 431 SUPERFAMILY SSF51261 145 391 9.42E-71 T 11-11-2016 IPR011055 Duplicated hybrid motif vm_RS12045 2d499efb123cf2478c5bc47ddee7ba36 431 Pfam PF01551 Peptidase family M23 296 390 2.0E-30 T 11-11-2016 IPR016047 Peptidase M23 vm_RS18800 7cd13af3956ea21e664ce05ef93c671d 64 Pfam PF00669 Bacterial flagellin N-terminal helical region 1 64 1.7E-15 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS18800 7cd13af3956ea21e664ce05ef93c671d 64 SUPERFAMILY SSF64518 1 64 3.01E-21 T 11-11-2016 vm_RS00875 17ced3b2e6393574cd42475c5232c678 125 Pfam PF01479 S4 domain 8 54 9.7E-13 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS00875 17ced3b2e6393574cd42475c5232c678 125 Gene3D G3DSA:3.10.290.10 6 102 3.6E-39 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS00875 17ced3b2e6393574cd42475c5232c678 125 SMART SM00363 8 71 1.1E-10 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS00875 17ced3b2e6393574cd42475c5232c678 125 SUPERFAMILY SSF55174 7 104 1.1E-31 T 11-11-2016 vm_RS00875 17ced3b2e6393574cd42475c5232c678 125 PIRSF PIRSF016821 5 125 2.3E-41 T 11-11-2016 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 Gene3D G3DSA:3.20.190.10 2 129 1.5E-36 T 11-11-2016 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 ProSitePatterns PS01242 Zinc finger FPG-type signature. 244 268 - T 11-11-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 Pfam PF06827 Zinc finger found in FPG and IleRS 242 269 4.0E-5 T 11-11-2016 IPR010663 Zinc finger, FPG/IleRS-type Reactome: R-HSA-379726 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 129 218 3.0E-28 T 11-11-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 269 43.374 T 11-11-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 SUPERFAMILY SSF81624 2 138 2.35E-39 T 11-11-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 SMART SM01232 129 221 6.5E-47 T 11-11-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 SUPERFAMILY SSF57716 217 268 6.56E-15 T 11-11-2016 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 SUPERFAMILY SSF46946 130 222 1.35E-30 T 11-11-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 SMART SM00898 2 115 1.9E-50 T 11-11-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 268 9.6E-96 T 11-11-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 114 6.1E-30 T 11-11-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 vm_RS14455 fe65a5c7ebf50036ac39c979e8d892ad 269 Gene3D G3DSA:1.10.8.50 130 269 5.3E-50 T 11-11-2016 vm_RS08215 f0cdbc49692c7e2bc25d30555aae8c7e 233 SMART SM00448 5 115 3.3E-38 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS08215 f0cdbc49692c7e2bc25d30555aae8c7e 233 Gene3D G3DSA:1.10.10.10 132 231 3.1E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS08215 f0cdbc49692c7e2bc25d30555aae8c7e 233 SUPERFAMILY SSF46894 134 230 9.35E-26 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS08215 f0cdbc49692c7e2bc25d30555aae8c7e 233 Gene3D G3DSA:3.40.50.2300 3 126 1.6E-35 T 11-11-2016 vm_RS08215 f0cdbc49692c7e2bc25d30555aae8c7e 233 SMART SM00862 152 228 7.8E-20 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS08215 f0cdbc49692c7e2bc25d30555aae8c7e 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 228 1.8E-21 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS08215 f0cdbc49692c7e2bc25d30555aae8c7e 233 SUPERFAMILY SSF52172 3 128 1.04E-35 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS08215 f0cdbc49692c7e2bc25d30555aae8c7e 233 Pfam PF00072 Response regulator receiver domain 8 116 1.5E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09230 fe32e21e5b7a3d59d4c4da3ffa2b358c 456 ProSitePatterns PS00163 Fumarate lyases signature. 295 304 - T 11-11-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 vm_RS09230 fe32e21e5b7a3d59d4c4da3ffa2b358c 456 Pfam PF00206 Lyase 14 313 2.2E-71 T 11-11-2016 IPR022761 Fumarate lyase, N-terminal vm_RS09230 fe32e21e5b7a3d59d4c4da3ffa2b358c 456 Gene3D G3DSA:1.10.40.30 391 446 8.8E-34 T 11-11-2016 vm_RS09230 fe32e21e5b7a3d59d4c4da3ffa2b358c 456 SUPERFAMILY SSF48557 4 449 2.04E-108 T 11-11-2016 IPR008948 L-Aspartase-like GO:0003824 vm_RS09230 fe32e21e5b7a3d59d4c4da3ffa2b358c 456 Gene3D G3DSA:1.10.275.10 1 119 8.6E-49 T 11-11-2016 IPR024083 Fumarase/histidase, N-terminal vm_RS09230 fe32e21e5b7a3d59d4c4da3ffa2b358c 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 1.2E-18 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS09230 fe32e21e5b7a3d59d4c4da3ffa2b358c 456 PRINTS PR00149 Fumarate lyase superfamily signature 252 279 1.2E-18 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS09230 fe32e21e5b7a3d59d4c4da3ffa2b358c 456 PRINTS PR00149 Fumarate lyase superfamily signature 295 311 1.2E-18 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS09230 fe32e21e5b7a3d59d4c4da3ffa2b358c 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 1.2E-18 T 11-11-2016 IPR000362 Fumarate lyase family vm_RS09230 fe32e21e5b7a3d59d4c4da3ffa2b358c 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 456 3.2E-151 T 11-11-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 vm_RS09230 fe32e21e5b7a3d59d4c4da3ffa2b358c 456 Gene3D G3DSA:1.20.200.10 120 390 8.8E-90 T 11-11-2016 vm_RS09230 fe32e21e5b7a3d59d4c4da3ffa2b358c 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 332 446 9.6E-52 T 11-11-2016 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234 vm_RS09180 80fe945fec80178f38c599156c7ef086 203 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 4 203 33.911 T 11-11-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 vm_RS09180 80fe945fec80178f38c599156c7ef086 203 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 5 202 3.0E-68 T 11-11-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 vm_RS09180 80fe945fec80178f38c599156c7ef086 203 SUPERFAMILY SSF52317 5 202 1.01E-52 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS09180 80fe945fec80178f38c599156c7ef086 203 PIRSF PIRSF000495 3 203 1.3E-64 T 11-11-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 vm_RS09180 80fe945fec80178f38c599156c7ef086 203 Pfam PF00117 Glutamine amidotransferase class-I 7 201 5.0E-18 T 11-11-2016 IPR017926 Glutamine amidotransferase vm_RS09180 80fe945fec80178f38c599156c7ef086 203 Gene3D G3DSA:3.40.50.880 2 203 9.0E-70 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS17990 df1cb5ef3714bb03f4905e912ba8f844 95 PRINTS PR00344 Bacterial sensor protein C-terminal signature 49 63 4.9E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS17990 df1cb5ef3714bb03f4905e912ba8f844 95 PRINTS PR00344 Bacterial sensor protein C-terminal signature 67 77 4.9E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS17990 df1cb5ef3714bb03f4905e912ba8f844 95 PRINTS PR00344 Bacterial sensor protein C-terminal signature 85 95 4.9E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS17990 df1cb5ef3714bb03f4905e912ba8f844 95 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 10 95 8.3E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS17990 df1cb5ef3714bb03f4905e912ba8f844 95 SMART SM00387 9 95 2.2E-12 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS17990 df1cb5ef3714bb03f4905e912ba8f844 95 Gene3D G3DSA:3.30.565.10 3 95 2.8E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS17990 df1cb5ef3714bb03f4905e912ba8f844 95 SUPERFAMILY SSF55874 3 94 1.7E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 161 174 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 223 238 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 Pfam PF02954 Bacterial regulatory protein, Fis family 444 484 4.3E-14 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 SMART SM00382 157 301 1.3E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 450 467 1.8E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 467 487 1.8E-10 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 Gene3D G3DSA:1.10.10.60 434 486 5.5E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 349 358 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 Pfam PF06490 Flagellar regulatory protein FleQ 6 115 3.5E-30 T 11-11-2016 IPR010518 Flagellar regulatory FleQ vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 SUPERFAMILY SSF46689 349 392 4.48E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 SUPERFAMILY SSF46689 434 486 4.48E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 Pfam PF00158 Sigma-54 interaction domain 137 304 5.9E-74 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 SUPERFAMILY SSF52172 6 182 5.98E-7 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 Gene3D G3DSA:1.10.8.60 311 381 4.0E-20 T 11-11-2016 vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 Gene3D G3DSA:3.40.50.300 134 309 7.7E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04265 dafe11d09839eafa684bb9d9b84301be 488 SUPERFAMILY SSF52540 137 378 4.58E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04370 ce026e1a09d2a39e39915391948625cc 361 Hamap MF_00300 Chorismate synthase [aroC]. 10 352 38.16 T 11-11-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 vm_RS04370 ce026e1a09d2a39e39915391948625cc 361 SUPERFAMILY SSF103263 4 352 6.93E-151 T 11-11-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 vm_RS04370 ce026e1a09d2a39e39915391948625cc 361 Gene3D G3DSA:3.60.150.10 9 352 9.5E-164 T 11-11-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 vm_RS04370 ce026e1a09d2a39e39915391948625cc 361 TIGRFAM TIGR00033 aroC: chorismate synthase 10 350 5.5E-144 T 11-11-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 vm_RS04370 ce026e1a09d2a39e39915391948625cc 361 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 11-11-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 vm_RS04370 ce026e1a09d2a39e39915391948625cc 361 ProSitePatterns PS00789 Chorismate synthase signature 3. 319 335 - T 11-11-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 vm_RS04370 ce026e1a09d2a39e39915391948625cc 361 PIRSF PIRSF001456 3 360 4.1E-144 T 11-11-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 vm_RS04370 ce026e1a09d2a39e39915391948625cc 361 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 11-11-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 vm_RS04370 ce026e1a09d2a39e39915391948625cc 361 Pfam PF01264 Chorismate synthase 10 345 2.8E-145 T 11-11-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 415 428 1.6E-10 T 11-11-2016 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 544 552 1.6E-10 T 11-11-2016 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 492 504 1.6E-10 T 11-11-2016 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 ProSitePatterns PS00116 DNA polymerase family B signature. 546 554 - T 11-11-2016 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 Gene3D G3DSA:1.10.287.690 468 507 0.001 T 11-11-2016 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 Pfam PF03104 DNA polymerase family B, exonuclease domain 150 296 1.0E-14 T 11-11-2016 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 Gene3D G3DSA:3.90.1600.10 401 431 2.2E-11 T 11-11-2016 IPR023211 DNA polymerase, palm domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 Gene3D G3DSA:3.90.1600.10 515 640 2.2E-11 T 11-11-2016 IPR023211 DNA polymerase, palm domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 Pfam PF00136 DNA polymerase family B 377 743 3.1E-41 T 11-11-2016 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 SUPERFAMILY SSF53098 4 389 4.96E-81 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 Gene3D G3DSA:3.30.420.10 176 344 2.0E-37 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 SUPERFAMILY SSF56672 385 780 2.89E-114 T 11-11-2016 vm_RS08795 d1b051a0fe96be3b9418c43c52941578 787 SMART SM00486 153 558 1.0E-61 T 11-11-2016 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS06855 098cfd193b56de4529d19fb3aba5bcb5 461 Gene3D G3DSA:1.10.740.10 348 458 2.8E-45 T 11-11-2016 IPR014737 Transposase, Tn5-like, C-terminal vm_RS06855 098cfd193b56de4529d19fb3aba5bcb5 461 Pfam PF02281 Transposase Tn5 dimerisation domain 361 454 2.4E-16 T 11-11-2016 IPR003201 Transposase Tn5, dimerisation vm_RS06855 098cfd193b56de4529d19fb3aba5bcb5 461 Pfam PF14706 Transposase DNA-binding 9 66 1.2E-20 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS06855 098cfd193b56de4529d19fb3aba5bcb5 461 Pfam PF01609 Transposase DDE domain 294 360 2.5E-5 T 11-11-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 vm_RS06855 098cfd193b56de4529d19fb3aba5bcb5 461 Gene3D G3DSA:3.90.350.10 68 346 1.1E-92 T 11-11-2016 IPR014736 Transposase, Tn5-like, core vm_RS06855 098cfd193b56de4529d19fb3aba5bcb5 461 SUPERFAMILY SSF53098 4 460 5.61E-128 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS06855 098cfd193b56de4529d19fb3aba5bcb5 461 Gene3D G3DSA:1.10.246.40 2 65 3.7E-26 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS11790 098cfd193b56de4529d19fb3aba5bcb5 461 Gene3D G3DSA:1.10.740.10 348 458 2.8E-45 T 11-11-2016 IPR014737 Transposase, Tn5-like, C-terminal vm_RS11790 098cfd193b56de4529d19fb3aba5bcb5 461 Pfam PF02281 Transposase Tn5 dimerisation domain 361 454 2.4E-16 T 11-11-2016 IPR003201 Transposase Tn5, dimerisation vm_RS11790 098cfd193b56de4529d19fb3aba5bcb5 461 Pfam PF14706 Transposase DNA-binding 9 66 1.2E-20 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS11790 098cfd193b56de4529d19fb3aba5bcb5 461 Pfam PF01609 Transposase DDE domain 294 360 2.5E-5 T 11-11-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 vm_RS11790 098cfd193b56de4529d19fb3aba5bcb5 461 Gene3D G3DSA:3.90.350.10 68 346 1.1E-92 T 11-11-2016 IPR014736 Transposase, Tn5-like, core vm_RS11790 098cfd193b56de4529d19fb3aba5bcb5 461 SUPERFAMILY SSF53098 4 460 5.61E-128 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS11790 098cfd193b56de4529d19fb3aba5bcb5 461 Gene3D G3DSA:1.10.246.40 2 65 3.7E-26 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS04560 098cfd193b56de4529d19fb3aba5bcb5 461 Gene3D G3DSA:1.10.740.10 348 458 2.8E-45 T 11-11-2016 IPR014737 Transposase, Tn5-like, C-terminal vm_RS04560 098cfd193b56de4529d19fb3aba5bcb5 461 Pfam PF02281 Transposase Tn5 dimerisation domain 361 454 2.4E-16 T 11-11-2016 IPR003201 Transposase Tn5, dimerisation vm_RS04560 098cfd193b56de4529d19fb3aba5bcb5 461 Pfam PF14706 Transposase DNA-binding 9 66 1.2E-20 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS04560 098cfd193b56de4529d19fb3aba5bcb5 461 Pfam PF01609 Transposase DDE domain 294 360 2.5E-5 T 11-11-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 vm_RS04560 098cfd193b56de4529d19fb3aba5bcb5 461 Gene3D G3DSA:3.90.350.10 68 346 1.1E-92 T 11-11-2016 IPR014736 Transposase, Tn5-like, core vm_RS04560 098cfd193b56de4529d19fb3aba5bcb5 461 SUPERFAMILY SSF53098 4 460 5.61E-128 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS04560 098cfd193b56de4529d19fb3aba5bcb5 461 Gene3D G3DSA:1.10.246.40 2 65 3.7E-26 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS11935 098cfd193b56de4529d19fb3aba5bcb5 461 Gene3D G3DSA:1.10.740.10 348 458 2.8E-45 T 11-11-2016 IPR014737 Transposase, Tn5-like, C-terminal vm_RS11935 098cfd193b56de4529d19fb3aba5bcb5 461 Pfam PF02281 Transposase Tn5 dimerisation domain 361 454 2.4E-16 T 11-11-2016 IPR003201 Transposase Tn5, dimerisation vm_RS11935 098cfd193b56de4529d19fb3aba5bcb5 461 Pfam PF14706 Transposase DNA-binding 9 66 1.2E-20 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS11935 098cfd193b56de4529d19fb3aba5bcb5 461 Pfam PF01609 Transposase DDE domain 294 360 2.5E-5 T 11-11-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 vm_RS11935 098cfd193b56de4529d19fb3aba5bcb5 461 Gene3D G3DSA:3.90.350.10 68 346 1.1E-92 T 11-11-2016 IPR014736 Transposase, Tn5-like, core vm_RS11935 098cfd193b56de4529d19fb3aba5bcb5 461 SUPERFAMILY SSF53098 4 460 5.61E-128 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS11935 098cfd193b56de4529d19fb3aba5bcb5 461 Gene3D G3DSA:1.10.246.40 2 65 3.7E-26 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS03830 209d31ec20407e032990186a8eede968 377 Pfam PF16538 Flagellar assembly protein T, C-terminal domain 299 375 7.9E-27 T 11-11-2016 IPR032388 Flagellar assembly protein T, C-terminal vm_RS03830 209d31ec20407e032990186a8eede968 377 Pfam PF16548 Flagellar assembly protein T, N-terminal domain 24 110 9.0E-26 T 11-11-2016 IPR032370 Flagellar assembly protein T, N-terminal vm_RS03830 209d31ec20407e032990186a8eede968 377 Pfam PF16539 Flagellar assembly protein T, middle domain 114 256 3.1E-42 T 11-11-2016 IPR032386 Flagellar assembly protein T, middle domain vm_RS06455 1b6b1805b65af85088a07de813d2cf6d 214 Gene3D G3DSA:3.40.50.620 16 151 1.9E-51 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS06455 1b6b1805b65af85088a07de813d2cf6d 214 Pfam PF02698 DUF218 domain 26 150 2.5E-25 T 11-11-2016 IPR003848 Domain of unknown function DUF218 vm_RS09550 f567f6920a2a4b8237c869facde40dc2 113 SMART SM00418 5 83 4.2E-23 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 vm_RS09550 f567f6920a2a4b8237c869facde40dc2 113 Gene3D G3DSA:1.10.10.10 5 88 2.9E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09550 f567f6920a2a4b8237c869facde40dc2 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 55 1.4E-18 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 vm_RS09550 f567f6920a2a4b8237c869facde40dc2 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 27 38 1.4E-18 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 vm_RS09550 f567f6920a2a4b8237c869facde40dc2 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 55 70 1.4E-18 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 vm_RS09550 f567f6920a2a4b8237c869facde40dc2 113 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 7 22 1.4E-18 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 vm_RS09550 f567f6920a2a4b8237c869facde40dc2 113 Pfam PF01022 Bacterial regulatory protein, arsR family 12 57 6.9E-11 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 vm_RS09550 f567f6920a2a4b8237c869facde40dc2 113 SUPERFAMILY SSF46785 5 87 9.58E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09365 3e009ff7dd0978414d79b4be2c9a6fd6 714 Gene3D G3DSA:3.40.50.10750 524 682 3.7E-68 T 11-11-2016 vm_RS09365 3e009ff7dd0978414d79b4be2c9a6fd6 714 Pfam PF13500 AAA domain 3 229 3.0E-48 T 11-11-2016 vm_RS09365 3e009ff7dd0978414d79b4be2c9a6fd6 714 Gene3D G3DSA:3.40.50.300 2 222 2.2E-10 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09365 3e009ff7dd0978414d79b4be2c9a6fd6 714 PIRSF PIRSF006107 1 714 0.0 T 11-11-2016 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 vm_RS09365 3e009ff7dd0978414d79b4be2c9a6fd6 714 Gene3D G3DSA:3.40.1390.20 226 364 3.0E-29 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like vm_RS09365 3e009ff7dd0978414d79b4be2c9a6fd6 714 SUPERFAMILY SSF53659 392 709 3.37E-96 T 11-11-2016 vm_RS09365 3e009ff7dd0978414d79b4be2c9a6fd6 714 Pfam PF07085 DRTGG domain 233 344 2.6E-28 T 11-11-2016 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 vm_RS09365 3e009ff7dd0978414d79b4be2c9a6fd6 714 SUPERFAMILY SSF75138 229 353 3.14E-24 T 11-11-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like vm_RS09365 3e009ff7dd0978414d79b4be2c9a6fd6 714 Pfam PF01515 Phosphate acetyl/butaryl transferase 391 706 6.4E-130 T 11-11-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 vm_RS09365 3e009ff7dd0978414d79b4be2c9a6fd6 714 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 406 706 1.4E-137 T 11-11-2016 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 vm_RS09365 3e009ff7dd0978414d79b4be2c9a6fd6 714 SUPERFAMILY SSF52540 1 240 5.84E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07960 a534d0e1f294e04dde217d193533d600 210 Pfam PF10816 Domain of unknown function (DUF2760) 87 209 7.9E-54 T 11-11-2016 IPR021212 Domain of unknown function DUF2760 vm_RS03135 204ab32e5802f1c4246aa88c7ab0e13c 426 TIGRFAM TIGR00260 thrC: threonine synthase 51 391 9.1E-112 T 11-11-2016 IPR004450 Threonine synthase-like vm_RS03135 204ab32e5802f1c4246aa88c7ab0e13c 426 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 87 366 1.2E-25 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS03135 204ab32e5802f1c4246aa88c7ab0e13c 426 Gene3D G3DSA:3.90.1380.10 1 82 2.8E-18 T 11-11-2016 IPR029144 Threonine synthase, N-terminal vm_RS03135 204ab32e5802f1c4246aa88c7ab0e13c 426 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 95 109 - T 11-11-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 vm_RS03135 204ab32e5802f1c4246aa88c7ab0e13c 426 Gene3D G3DSA:3.40.50.1100 104 192 6.4E-12 T 11-11-2016 vm_RS03135 204ab32e5802f1c4246aa88c7ab0e13c 426 Pfam PF14821 Threonine synthase N terminus 8 78 1.1E-8 T 11-11-2016 IPR029144 Threonine synthase, N-terminal vm_RS03135 204ab32e5802f1c4246aa88c7ab0e13c 426 Gene3D G3DSA:3.40.50.1100 323 399 1.2E-15 T 11-11-2016 vm_RS03135 204ab32e5802f1c4246aa88c7ab0e13c 426 Gene3D G3DSA:3.40.50.1100 193 314 6.7E-53 T 11-11-2016 vm_RS03135 204ab32e5802f1c4246aa88c7ab0e13c 426 SUPERFAMILY SSF53686 1 424 9.56E-131 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS02945 cbdb7c587aff63c4bc38cc4ad76f0d45 581 SUPERFAMILY SSF56519 70 241 2.49E-42 T 11-11-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 vm_RS02945 cbdb7c587aff63c4bc38cc4ad76f0d45 581 Gene3D G3DSA:3.40.710.10 249 569 2.2E-87 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS02945 cbdb7c587aff63c4bc38cc4ad76f0d45 581 Gene3D G3DSA:3.90.1310.10 149 248 9.2E-31 T 11-11-2016 vm_RS02945 cbdb7c587aff63c4bc38cc4ad76f0d45 581 SUPERFAMILY SSF56601 242 571 1.99E-90 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS02945 cbdb7c587aff63c4bc38cc4ad76f0d45 581 Pfam PF00905 Penicillin binding protein transpeptidase domain 268 563 5.5E-77 T 11-11-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 vm_RS02945 cbdb7c587aff63c4bc38cc4ad76f0d45 581 Pfam PF03717 Penicillin-binding Protein dimerisation domain 75 228 2.6E-17 T 11-11-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 Gene3D G3DSA:3.50.30.20 2 128 1.7E-55 T 11-11-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 Pfam PF00117 Glutamine amidotransferase class-I 180 355 5.3E-48 T 11-11-2016 IPR017926 Glutamine amidotransferase vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 7 115 1.9E-46 T 11-11-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 PRINTS PR00097 Anthranilate synthase component II signature 247 258 1.3E-5 T 11-11-2016 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 PRINTS PR00097 Anthranilate synthase component II signature 219 228 1.3E-5 T 11-11-2016 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 PRINTS PR00097 Anthranilate synthase component II signature 332 345 1.3E-5 T 11-11-2016 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 Gene3D G3DSA:3.40.50.880 137 361 5.2E-83 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 SUPERFAMILY SSF52021 2 125 1.7E-50 T 11-11-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 2 358 1.9E-142 T 11-11-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 1 361 44.518 T 11-11-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 247 263 5.6E-40 T 11-11-2016 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 281 5.6E-40 T 11-11-2016 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 216 230 5.6E-40 T 11-11-2016 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 177 191 5.6E-40 T 11-11-2016 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 289 300 5.6E-40 T 11-11-2016 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 SUPERFAMILY SSF52317 136 360 3.21E-64 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 PRINTS PR00096 Glutamine amidotransferase superfamily signature 219 228 4.2E-11 T 11-11-2016 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 PRINTS PR00096 Glutamine amidotransferase superfamily signature 247 258 4.2E-11 T 11-11-2016 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 PRINTS PR00096 Glutamine amidotransferase superfamily signature 332 345 4.2E-11 T 11-11-2016 vm_RS03025 0acbd68ac1a8bb40717286df117621de 362 SMART SM01097 1 116 9.0E-75 T 11-11-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS08955 0c309b63b24c3980f42a6bd5f7d9f205 319 Gene3D G3DSA:3.10.290.10 3 62 7.0E-15 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS08955 0c309b63b24c3980f42a6bd5f7d9f205 319 SMART SM00363 3 73 6.3E-9 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS08955 0c309b63b24c3980f42a6bd5f7d9f205 319 SUPERFAMILY SSF55174 4 96 3.87E-12 T 11-11-2016 vm_RS08955 0c309b63b24c3980f42a6bd5f7d9f205 319 SUPERFAMILY SSF55120 68 236 3.42E-42 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS08955 0c309b63b24c3980f42a6bd5f7d9f205 319 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 106 120 - T 11-11-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 vm_RS08955 0c309b63b24c3980f42a6bd5f7d9f205 319 Pfam PF01479 S4 domain 4 36 1.1E-9 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS08955 0c309b63b24c3980f42a6bd5f7d9f205 319 Pfam PF00849 RNA pseudouridylate synthase 68 154 5.2E-17 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS08955 0c309b63b24c3980f42a6bd5f7d9f205 319 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 72 232 4.1E-56 T 11-11-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 vm_RS01190 668c0735755761195d2209be22a88a7d 85 Pfam PF13693 Winged helix-turn-helix DNA-binding 16 80 8.7E-31 T 11-11-2016 vm_RS01190 668c0735755761195d2209be22a88a7d 85 Gene3D G3DSA:1.10.260.40 14 79 5.4E-35 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS01190 668c0735755761195d2209be22a88a7d 85 SUPERFAMILY SSF47413 14 80 3.09E-28 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS03930 d98f64618486b8401cf587ef8bdf9136 377 Gene3D G3DSA:1.20.1330.10 55 171 6.0E-63 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS03930 d98f64618486b8401cf587ef8bdf9136 377 Gene3D G3DSA:1.20.1330.10 279 332 6.0E-63 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS03930 d98f64618486b8401cf587ef8bdf9136 377 SUPERFAMILY SSF64518 1 376 3.01E-99 T 11-11-2016 vm_RS03930 d98f64618486b8401cf587ef8bdf9136 377 Pfam PF00700 Bacterial flagellin C-terminal helical region 292 376 2.2E-25 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS03930 d98f64618486b8401cf587ef8bdf9136 377 Pfam PF07196 Flagellin hook IN motif 194 249 4.1E-12 T 11-11-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 vm_RS03930 d98f64618486b8401cf587ef8bdf9136 377 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 142 5.8E-42 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS03930 d98f64618486b8401cf587ef8bdf9136 377 PRINTS PR00207 Flagellin signature 37 54 1.9E-27 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS03930 d98f64618486b8401cf587ef8bdf9136 377 PRINTS PR00207 Flagellin signature 111 134 1.9E-27 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS03930 d98f64618486b8401cf587ef8bdf9136 377 PRINTS PR00207 Flagellin signature 76 95 1.9E-27 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 Pfam PF14849 YidC periplasmic domain 66 341 3.8E-84 T 11-11-2016 IPR028053 Membrane insertase YidC, N-terminal vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 351 530 6.0E-74 T 11-11-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 Pfam PF02096 60Kd inner membrane protein 352 531 5.0E-64 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 PRINTS PR01900 YidC translocation/secretion protein signature 466 481 2.0E-27 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 PRINTS PR01900 YidC translocation/secretion protein signature 337 353 2.0E-27 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 PRINTS PR01900 YidC translocation/secretion protein signature 486 510 2.0E-27 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 PRINTS PR00701 60kDa inner membrane protein signature 162 182 2.2E-100 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 PRINTS PR00701 60kDa inner membrane protein signature 72 93 2.2E-100 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 PRINTS PR00701 60kDa inner membrane protein signature 2 23 2.2E-100 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 PRINTS PR00701 60kDa inner membrane protein signature 413 436 2.2E-100 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 PRINTS PR00701 60kDa inner membrane protein signature 250 265 2.2E-100 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 PRINTS PR00701 60kDa inner membrane protein signature 497 520 2.2E-100 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 PRINTS PR00701 60kDa inner membrane protein signature 215 233 2.2E-100 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 PRINTS PR00701 60kDa inner membrane protein signature 322 342 2.2E-100 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 PRINTS PR00701 60kDa inner membrane protein signature 460 482 2.2E-100 T 11-11-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 533 26.288 T 11-11-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 vm_RS15045 b7c1a2f11e12929447c061fbc13f10bc 541 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 3 350 4.9E-115 T 11-11-2016 IPR028053 Membrane insertase YidC, N-terminal vm_RS12965 7e524967e1b6e34fba814c799ca2ae73 358 SUPERFAMILY SSF51569 4 356 3.66E-131 T 11-11-2016 vm_RS12965 7e524967e1b6e34fba814c799ca2ae73 358 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 171 182 - T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 vm_RS12965 7e524967e1b6e34fba814c799ca2ae73 358 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 100 111 - T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 vm_RS12965 7e524967e1b6e34fba814c799ca2ae73 358 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 14 356 2.3E-111 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 vm_RS12965 7e524967e1b6e34fba814c799ca2ae73 358 PIRSF PIRSF001359 13 358 1.7E-94 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 vm_RS12965 7e524967e1b6e34fba814c799ca2ae73 358 Pfam PF01116 Fructose-bisphosphate aldolase class-II 17 354 6.9E-91 T 11-11-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 vm_RS12965 7e524967e1b6e34fba814c799ca2ae73 358 Gene3D G3DSA:3.20.20.70 11 354 1.3E-124 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS12965 7e524967e1b6e34fba814c799ca2ae73 358 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 4 357 1.3E-180 T 11-11-2016 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385 vm_RS03330 089a9c7f4d7498a8754e955d76ef918e 1148 SUPERFAMILY SSF52980 826 1135 5.36E-75 T 11-11-2016 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 vm_RS03330 089a9c7f4d7498a8754e955d76ef918e 1148 SUPERFAMILY SSF52540 367 810 4.46E-102 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03330 089a9c7f4d7498a8754e955d76ef918e 1148 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 2 809 8.8E-298 T 11-11-2016 vm_RS03330 089a9c7f4d7498a8754e955d76ef918e 1148 SUPERFAMILY SSF52540 2 352 5.84E-123 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03330 089a9c7f4d7498a8754e955d76ef918e 1148 Gene3D G3DSA:1.10.10.160 86 182 4.4E-36 T 11-11-2016 IPR013986 DExx box DNA helicase domain vm_RS03330 089a9c7f4d7498a8754e955d76ef918e 1148 PIRSF PIRSF000980 1 1148 0.0 T 11-11-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 vm_RS03330 089a9c7f4d7498a8754e955d76ef918e 1148 Gene3D G3DSA:3.40.50.300 663 759 1.2E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03330 089a9c7f4d7498a8754e955d76ef918e 1148 Gene3D G3DSA:3.40.50.300 364 457 1.2E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03330 089a9c7f4d7498a8754e955d76ef918e 1148 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 2 1109 0.0 T 11-11-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 vm_RS03330 089a9c7f4d7498a8754e955d76ef918e 1148 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 1 1146 20.782 T 11-11-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 vm_RS07400 f41075c7824c5e91ea954933f3785a88 160 SUPERFAMILY SSF89963 2 86 9.42E-30 T 11-11-2016 IPR007551 Protein of unknown function DUF520 vm_RS07400 f41075c7824c5e91ea954933f3785a88 160 Gene3D G3DSA:3.30.70.990 9 94 2.6E-29 T 11-11-2016 vm_RS07400 f41075c7824c5e91ea954933f3785a88 160 Pfam PF04461 Protein of unknown function (DUF520) 2 159 3.3E-63 T 11-11-2016 IPR007551 Protein of unknown function DUF520 vm_RS07400 f41075c7824c5e91ea954933f3785a88 160 Gene3D G3DSA:3.30.70.860 95 160 2.1E-34 T 11-11-2016 vm_RS07400 f41075c7824c5e91ea954933f3785a88 160 SUPERFAMILY SSF89963 88 160 5.23E-29 T 11-11-2016 IPR007551 Protein of unknown function DUF520 vm_RS07400 f41075c7824c5e91ea954933f3785a88 160 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 160 28.99 T 11-11-2016 IPR007551 Protein of unknown function DUF520 vm_RS11305 27164f750c3926215658644a3acddf7d 420 Pfam PF01266 FAD dependent oxidoreductase 3 397 2.4E-66 T 11-11-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 vm_RS11305 27164f750c3926215658644a3acddf7d 420 Gene3D G3DSA:3.50.50.60 1 58 3.9E-48 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS11305 27164f750c3926215658644a3acddf7d 420 Gene3D G3DSA:3.50.50.60 108 130 3.9E-48 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS11305 27164f750c3926215658644a3acddf7d 420 Gene3D G3DSA:3.50.50.60 191 269 3.9E-48 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS11305 27164f750c3926215658644a3acddf7d 420 Gene3D G3DSA:3.50.50.60 360 407 3.9E-48 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS11305 27164f750c3926215658644a3acddf7d 420 SUPERFAMILY SSF54373 270 360 1.7E-16 T 11-11-2016 vm_RS11305 27164f750c3926215658644a3acddf7d 420 Gene3D G3DSA:3.30.9.10 270 359 9.9E-16 T 11-11-2016 vm_RS11305 27164f750c3926215658644a3acddf7d 420 Gene3D G3DSA:3.30.9.10 134 190 9.9E-16 T 11-11-2016 vm_RS11305 27164f750c3926215658644a3acddf7d 420 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 47.321 T 11-11-2016 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 vm_RS11305 27164f750c3926215658644a3acddf7d 420 SUPERFAMILY SSF51905 1 54 2.2E-54 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS11305 27164f750c3926215658644a3acddf7d 420 SUPERFAMILY SSF51905 360 415 2.2E-54 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS11305 27164f750c3926215658644a3acddf7d 420 SUPERFAMILY SSF51905 107 270 2.2E-54 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS12660 3704a753f2eaf25445f07b0bc5c20405 73 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 1 51 4.8E-23 T 11-11-2016 IPR010260 Prophage CP4-57 regulatory protein (AlpA) vm_RS01410 979d8d1da7086c0124788ca5ee512d6c 117 Pfam PF10618 Phage tail tube protein 1 115 1.5E-27 T 11-11-2016 IPR019596 Bacteriophage Mu, GpM, tail tube vm_RS11110 979d8d1da7086c0124788ca5ee512d6c 117 Pfam PF10618 Phage tail tube protein 1 115 1.5E-27 T 11-11-2016 IPR019596 Bacteriophage Mu, GpM, tail tube vm_RS03175 46f46011a23514568b3a949b50d45526 257 Pfam PF03883 Protein of unknown function (DUF328) 1 243 2.5E-93 T 11-11-2016 IPR005583 Peroxide stress protein YaaA vm_RS03175 46f46011a23514568b3a949b50d45526 257 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 38.798 T 11-11-2016 IPR005583 Peroxide stress protein YaaA vm_RS13955 2af43db19a4591df91ffd84f2bbbc15d 258 PRINTS PR00502 NUDIX hydrolase family signature 169 184 5.3E-5 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 vm_RS13955 2af43db19a4591df91ffd84f2bbbc15d 258 PRINTS PR00502 NUDIX hydrolase family signature 155 169 5.3E-5 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 vm_RS13955 2af43db19a4591df91ffd84f2bbbc15d 258 ProSitePatterns PS00893 Nudix box signature. 160 181 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 vm_RS13955 2af43db19a4591df91ffd84f2bbbc15d 258 Hamap MF_00297 NADH pyrophosphatase [nudC]. 2 258 43.144 T 11-11-2016 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 vm_RS13955 2af43db19a4591df91ffd84f2bbbc15d 258 SUPERFAMILY SSF55811 58 244 1.44E-43 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS13955 2af43db19a4591df91ffd84f2bbbc15d 258 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 95 125 1.4E-9 T 11-11-2016 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 vm_RS13955 2af43db19a4591df91ffd84f2bbbc15d 258 Gene3D G3DSA:3.90.79.10 94 247 4.1E-42 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS13955 2af43db19a4591df91ffd84f2bbbc15d 258 Pfam PF00293 NUDIX domain 133 234 2.2E-19 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 vm_RS10830 ae9b3a9b314265ae3a92549264269f04 170 PIRSF PIRSF024622 1 170 8.6E-68 T 11-11-2016 IPR016824 Tfp pilus assembly protein FimT vm_RS10830 ae9b3a9b314265ae3a92549264269f04 170 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 3 23 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS10830 ae9b3a9b314265ae3a92549264269f04 170 SUPERFAMILY SSF54523 5 103 4.87E-13 T 11-11-2016 vm_RS10830 ae9b3a9b314265ae3a92549264269f04 170 Pfam PF12019 Type II transport protein GspH 41 148 5.2E-9 T 11-11-2016 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 vm_RS10830 ae9b3a9b314265ae3a92549264269f04 170 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 3 24 1.3E-6 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS03755 01169776bb2c14f2e99e774f14a167e0 212 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 3 192 1.4E-77 T 11-11-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 vm_RS03755 01169776bb2c14f2e99e774f14a167e0 212 Gene3D G3DSA:3.40.50.170 2 196 1.5E-70 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS03755 01169776bb2c14f2e99e774f14a167e0 212 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 188 31.264 T 11-11-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 vm_RS03755 01169776bb2c14f2e99e774f14a167e0 212 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 134 157 - T 11-11-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS03755 01169776bb2c14f2e99e774f14a167e0 212 Pfam PF00551 Formyl transferase 3 182 9.5E-64 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS03755 01169776bb2c14f2e99e774f14a167e0 212 SUPERFAMILY SSF53328 4 198 2.35E-64 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS04065 206d712e254d702657bb10baa8aad01f 283 Pfam PF00793 DAHP synthetase I family 10 275 3.4E-70 T 11-11-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 vm_RS04065 206d712e254d702657bb10baa8aad01f 283 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 275 8.0E-116 T 11-11-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 vm_RS04065 206d712e254d702657bb10baa8aad01f 283 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 277 48.145 T 11-11-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 vm_RS04065 206d712e254d702657bb10baa8aad01f 283 Gene3D G3DSA:3.20.20.70 16 279 1.2E-107 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS04065 206d712e254d702657bb10baa8aad01f 283 SUPERFAMILY SSF51569 3 278 2.56E-104 T 11-11-2016 vm_RS06500 27d67003d19463fe36f5596513bb1305 578 Pfam PF02065 Melibiase 168 351 1.4E-17 T 11-11-2016 IPR002252 Glycoside hydrolase family 36 GO:0004557|GO:0005975 KEGG: 00052+3.2.1.22|KEGG: 00561+3.2.1.22|KEGG: 00600+3.2.1.22|KEGG: 00603+3.2.1.22|MetaCyc: PWY-6527 vm_RS06500 27d67003d19463fe36f5596513bb1305 578 SUPERFAMILY SSF51445 190 531 1.7E-81 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS06500 27d67003d19463fe36f5596513bb1305 578 Gene3D G3DSA:3.20.20.70 188 488 1.6E-52 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 19 237 1.5E-30 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 SUPERFAMILY SSF88659 92 162 8.28E-16 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 Gene3D G3DSA:1.10.10.10 176 238 2.2E-13 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 Gene3D G3DSA:1.10.601.10 19 86 3.0E-14 T 11-11-2016 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 SUPERFAMILY SSF88946 6 91 1.83E-22 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 Pfam PF04542 Sigma-70 region 2 20 91 4.0E-15 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 Pfam PF04539 Sigma-70 region 3 100 172 4.6E-14 T 11-11-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 PRINTS PR00046 Major sigma-70 factor signature 46 59 7.3E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 PRINTS PR00046 Major sigma-70 factor signature 222 233 7.3E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 PRINTS PR00046 Major sigma-70 factor signature 190 202 7.3E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 PRINTS PR00046 Major sigma-70 factor signature 207 222 7.3E-12 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 SUPERFAMILY SSF88659 163 240 5.61E-20 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 Pfam PF04545 Sigma-70, region 4 187 234 4.0E-18 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 20 238 4.3E-82 T 11-11-2016 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 Gene3D G3DSA:1.10.10.10 91 138 4.0E-10 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 7 240 61.691 T 11-11-2016 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 vm_RS04605 9d6149be8feb9ee205c87cb169c36bee 244 PIRSF PIRSF000770 3 242 1.6E-35 T 11-11-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 vm_RS03455 ff256f5e19fc79c9cd38dc0f12d09744 210 PIRSF PIRSF006102 3 210 8.1E-73 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 vm_RS03455 ff256f5e19fc79c9cd38dc0f12d09744 210 TIGRFAM TIGR01939 nqrD: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit 3 207 2.4E-108 T 11-11-2016 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 vm_RS03455 ff256f5e19fc79c9cd38dc0f12d09744 210 Pfam PF02508 Rnf-Nqr subunit, membrane protein 9 195 7.7E-63 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 vm_RS03455 ff256f5e19fc79c9cd38dc0f12d09744 210 Hamap MF_00428 Na(+)-translocating NADH-quinone reductase subunit D [nqrD]. 2 207 36.959 T 11-11-2016 IPR011292 Na(+)-translocating NADH-quinone reductase subunit D GO:0016655|GO:0055114 vm_RS11380 65ddaf93eec4534c40ffd8b5061835b7 374 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 358 34.807 T 11-11-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 vm_RS11380 65ddaf93eec4534c40ffd8b5061835b7 374 SUPERFAMILY SSF51604 24 139 1.17E-9 T 11-11-2016 IPR029065 Enolase C-terminal domain-like vm_RS11380 65ddaf93eec4534c40ffd8b5061835b7 374 SUPERFAMILY SSF56014 265 354 2.06E-11 T 11-11-2016 vm_RS11380 65ddaf93eec4534c40ffd8b5061835b7 374 Gene3D G3DSA:3.20.20.70 30 132 1.8E-8 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS11380 65ddaf93eec4534c40ffd8b5061835b7 374 PIRSF PIRSF004640 1 364 3.2E-146 T 11-11-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 vm_RS11380 65ddaf93eec4534c40ffd8b5061835b7 374 Pfam PF04551 GcpE protein 14 354 3.2E-131 T 11-11-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 vm_RS11380 65ddaf93eec4534c40ffd8b5061835b7 374 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 351 1.2E-124 T 11-11-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 vm_RS14695 8de1b06844d54e636a66c70c697f89de 368 Gene3D G3DSA:2.40.50.100 163 194 6.4E-13 T 11-11-2016 vm_RS14695 8de1b06844d54e636a66c70c697f89de 368 Gene3D G3DSA:2.40.50.100 70 102 6.4E-13 T 11-11-2016 vm_RS14695 8de1b06844d54e636a66c70c697f89de 368 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 269 1.9E-26 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain vm_RS14695 8de1b06844d54e636a66c70c697f89de 368 SUPERFAMILY SSF111369 58 273 1.05E-39 T 11-11-2016 vm_RS14695 8de1b06844d54e636a66c70c697f89de 368 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 44 353 3.7E-74 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 vm_RS10720 5db0c866a769ae961bb5cfb933c6aa2b 100 Pfam PF11743 Protein of unknown function (DUF3301) 5 96 2.4E-30 T 11-11-2016 IPR021732 Protein of unknown function DUF3301 vm_RS06505 8fe804d5bb6b4d7760beff6ecb15f74e 353 SUPERFAMILY SSF52540 103 319 6.79E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06505 8fe804d5bb6b4d7760beff6ecb15f74e 353 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 35 322 31.805 T 11-11-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 vm_RS06505 8fe804d5bb6b4d7760beff6ecb15f74e 353 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 69 314 4.2E-48 T 11-11-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 vm_RS06505 8fe804d5bb6b4d7760beff6ecb15f74e 353 Gene3D G3DSA:1.10.40.50 263 320 4.3E-22 T 11-11-2016 vm_RS06505 8fe804d5bb6b4d7760beff6ecb15f74e 353 Gene3D G3DSA:3.40.50.300 102 257 7.7E-39 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06505 8fe804d5bb6b4d7760beff6ecb15f74e 353 Pfam PF03193 Protein of unknown function, DUF258 85 258 1.1E-48 T 11-11-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 Gene3D G3DSA:3.90.226.10 29 174 6.8E-62 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 Gene3D G3DSA:3.90.226.10 468 552 9.2E-67 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 Gene3D G3DSA:3.90.226.10 217 312 6.8E-62 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 Gene3D G3DSA:3.90.226.10 323 431 9.2E-67 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 TIGRFAM TIGR00706 SppA_dom: signal peptide peptidase SppA, 36K type 327 539 1.5E-53 T 11-11-2016 IPR004635 Peptidase S49, SppA GO:0006508|GO:0008233 vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 Pfam PF01343 Peptidase family S49 391 541 1.4E-45 T 11-11-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 Pfam PF01343 Peptidase family S49 138 294 1.7E-31 T 11-11-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 TIGRFAM TIGR00705 SppA_67K: signal peptide peptidase SppA, 67K type 16 608 4.2E-191 T 11-11-2016 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 PIRSF PIRSF001217 8 616 5.1E-224 T 11-11-2016 IPR004634 Peptidase S49, protease IV GO:0006465|GO:0008233|GO:0016021 vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 SUPERFAMILY SSF52096 320 439 4.97E-43 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 SUPERFAMILY SSF52096 467 529 4.97E-43 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 SUPERFAMILY SSF52096 36 178 9.11E-28 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS05005 711703ed406d57b1a32d997eafeeba68 616 SUPERFAMILY SSF52096 209 284 9.11E-28 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS08415 8b7c1182409b77740335c937117edb78 101 SUPERFAMILY SSF52794 1 101 1.15E-36 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 vm_RS08415 8b7c1182409b77740335c937117edb78 101 Gene3D G3DSA:3.40.50.270 1 101 7.5E-39 T 11-11-2016 vm_RS08415 8b7c1182409b77740335c937117edb78 101 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 3 95 2.2E-24 T 11-11-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 204 31.571 T 11-11-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 SUPERFAMILY SSF46929 159 203 2.49E-12 T 11-11-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 Gene3D G3DSA:1.10.8.10 158 204 1.1E-22 T 11-11-2016 vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 Pfam PF01330 RuvA N terminal domain 2 62 7.4E-20 T 11-11-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 Gene3D G3DSA:2.40.50.140 2 65 2.4E-26 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 SMART SM00278 73 92 160.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 SMART SM00278 108 127 0.046 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 Gene3D G3DSA:1.10.150.20 68 142 1.1E-29 T 11-11-2016 vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 203 1.4E-62 T 11-11-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 SUPERFAMILY SSF50249 2 63 4.68E-18 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 Pfam PF14520 Helix-hairpin-helix domain 72 130 4.0E-14 T 11-11-2016 vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 SUPERFAMILY SSF47781 66 136 1.67E-20 T 11-11-2016 IPR010994 RuvA domain 2-like vm_RS05835 8448bc9c94cb0b83e43812563b05c6d9 204 Pfam PF07499 RuvA, C-terminal domain 160 203 4.7E-17 T 11-11-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 vm_RS09645 2b3c31a95f37e616a3d103ebddb4585c 290 Gene3D G3DSA:1.10.10.60 243 289 1.3E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS09645 2b3c31a95f37e616a3d103ebddb4585c 290 SMART SM00342 205 287 6.9E-22 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS09645 2b3c31a95f37e616a3d103ebddb4585c 290 Gene3D G3DSA:1.10.10.60 187 242 1.8E-11 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS09645 2b3c31a95f37e616a3d103ebddb4585c 290 SUPERFAMILY SSF46689 241 289 2.82E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS09645 2b3c31a95f37e616a3d103ebddb4585c 290 Pfam PF12833 Helix-turn-helix domain 211 288 1.5E-15 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS09645 2b3c31a95f37e616a3d103ebddb4585c 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 271 287 3.4E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS09645 2b3c31a95f37e616a3d103ebddb4585c 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 271 3.4E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS09645 2b3c31a95f37e616a3d103ebddb4585c 290 Pfam PF12852 Cupin 3 173 1.4E-34 T 11-11-2016 IPR032783 AraC-type transcription regulator, ligand-binding domain vm_RS09645 2b3c31a95f37e616a3d103ebddb4585c 290 Gene3D G3DSA:2.60.120.10 37 77 7.9E-4 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS09645 2b3c31a95f37e616a3d103ebddb4585c 290 SUPERFAMILY SSF46689 188 238 2.42E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 SUPERFAMILY SSF56059 673 932 2.12E-105 T 11-11-2016 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Gene3D G3DSA:3.40.50.20 539 662 1.4E-61 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 875 6.7E-39 T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.6E-72 T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 SMART SM00851 955 1041 1.2E-27 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Gene3D G3DSA:3.40.50.20 3 108 6.6E-46 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Pfam PF02142 MGS-like domain 956 1041 3.5E-17 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 SUPERFAMILY SSF52335 937 1071 3.66E-35 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 3.1E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 3.1E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 3.1E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 3.1E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 3.1E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 3.1E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 3.1E-64 T 11-11-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Gene3D G3DSA:1.10.1030.10 400 538 2.0E-53 T 11-11-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1052 0.0 T 11-11-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 3.2E-42 T 11-11-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Gene3D G3DSA:3.30.1490.20 141 199 4.7E-25 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 SMART SM01096 424 547 2.5E-78 T 11-11-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 SUPERFAMILY SSF48108 396 554 2.75E-53 T 11-11-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 SUPERFAMILY SSF52440 1 127 7.77E-50 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 SUPERFAMILY SSF56059 128 401 5.66E-109 T 11-11-2016 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 SUPERFAMILY SSF52440 556 675 1.73E-49 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 11-11-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Gene3D G3DSA:3.30.1490.20 686 744 1.7E-25 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Gene3D G3DSA:3.40.50.1380 939 1071 2.4E-39 T 11-11-2016 IPR011607 Methylglyoxal synthase-like domain vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1062 13.147 T 11-11-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Gene3D G3DSA:3.30.470.20 745 932 4.5E-83 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Gene3D G3DSA:3.30.470.20 200 399 4.8E-74 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS03030 0324eeccc7ad1e9425c6e64bdcd5b23b 1076 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1067 13.424 T 11-11-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400 vm_RS05075 0c496fdb0e1d9b89149b322012adc2b6 441 Gene3D G3DSA:1.10.3410.10 251 354 1.2E-26 T 11-11-2016 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain vm_RS05075 0c496fdb0e1d9b89149b322012adc2b6 441 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 24 436 7.0E-142 T 11-11-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 vm_RS05075 0c496fdb0e1d9b89149b322012adc2b6 441 Pfam PF01966 HD domain 62 143 5.6E-7 T 11-11-2016 IPR006674 HD domain vm_RS05075 0c496fdb0e1d9b89149b322012adc2b6 441 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 5 435 34.586 T 11-11-2016 IPR023023 Deoxyguanosinetriphosphate triphosphohydrolase, type 2 vm_RS05075 0c496fdb0e1d9b89149b322012adc2b6 441 Pfam PF13286 Phosphohydrolase-associated domain 343 433 5.5E-29 T 11-11-2016 IPR026875 Phosphohydrolase-associated domain vm_RS05075 0c496fdb0e1d9b89149b322012adc2b6 441 Gene3D G3DSA:1.10.3550.10 355 432 1.5E-5 T 11-11-2016 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal domain vm_RS05075 0c496fdb0e1d9b89149b322012adc2b6 441 SUPERFAMILY SSF109604 232 437 3.52E-81 T 11-11-2016 vm_RS05075 0c496fdb0e1d9b89149b322012adc2b6 441 SUPERFAMILY SSF109604 23 167 3.52E-81 T 11-11-2016 vm_RS05075 0c496fdb0e1d9b89149b322012adc2b6 441 SMART SM00471 58 264 4.4E-8 T 11-11-2016 IPR003607 HD/PDEase domain vm_RS05075 0c496fdb0e1d9b89149b322012adc2b6 441 Gene3D G3DSA:1.10.3210.10 5 250 9.9E-68 T 11-11-2016 IPR006674 HD domain vm_RS09280 87163bae3fbd6ec56bc258e8b4f3128f 231 SUPERFAMILY SSF52540 1 216 3.02E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09280 87163bae3fbd6ec56bc258e8b4f3128f 231 Pfam PF13500 AAA domain 4 212 5.2E-38 T 11-11-2016 vm_RS09280 87163bae3fbd6ec56bc258e8b4f3128f 231 PIRSF PIRSF006755 1 228 1.1E-71 T 11-11-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 vm_RS09280 87163bae3fbd6ec56bc258e8b4f3128f 231 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 176 9.1E-52 T 11-11-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 vm_RS09280 87163bae3fbd6ec56bc258e8b4f3128f 231 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 212 28.691 T 11-11-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380 vm_RS09280 87163bae3fbd6ec56bc258e8b4f3128f 231 Gene3D G3DSA:3.40.50.300 4 221 3.3E-77 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03555 d0208bbf9195fbba043196f16836668c 367 Gene3D G3DSA:3.40.430.10 134 361 6.4E-66 T 11-11-2016 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 vm_RS03555 d0208bbf9195fbba043196f16836668c 367 Gene3D G3DSA:3.40.140.10 7 133 2.5E-33 T 11-11-2016 vm_RS03555 d0208bbf9195fbba043196f16836668c 367 SUPERFAMILY SSF53927 8 150 8.47E-47 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 vm_RS03555 d0208bbf9195fbba043196f16836668c 367 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 151 361 5.3E-57 T 11-11-2016 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 vm_RS03555 d0208bbf9195fbba043196f16836668c 367 SUPERFAMILY SSF53597 149 360 7.72E-55 T 11-11-2016 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 vm_RS03555 d0208bbf9195fbba043196f16836668c 367 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 12 358 2.1E-129 T 11-11-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 vm_RS03555 d0208bbf9195fbba043196f16836668c 367 PIRSF PIRSF006769 3 366 1.1E-122 T 11-11-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525 vm_RS03555 d0208bbf9195fbba043196f16836668c 367 Pfam PF01872 RibD C-terminal domain 152 356 9.4E-49 T 11-11-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 vm_RS03555 d0208bbf9195fbba043196f16836668c 367 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 55 93 - T 11-11-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 vm_RS03555 d0208bbf9195fbba043196f16836668c 367 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 104 6.6E-19 T 11-11-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 vm_RS07420 3ac993dfb3ffc55590ac4f58a47e46d4 277 SMART SM00316 69 132 6.6 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS07420 3ac993dfb3ffc55590ac4f58a47e46d4 277 SMART SM00316 145 207 2.3 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS07420 3ac993dfb3ffc55590ac4f58a47e46d4 277 SMART SM00316 3 64 21.0 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS07420 3ac993dfb3ffc55590ac4f58a47e46d4 277 PIRSF PIRSF012524 1 277 1.0E-104 T 11-11-2016 IPR014464 Conserved virulence factor B vm_RS07420 3ac993dfb3ffc55590ac4f58a47e46d4 277 Pfam PF13509 S1 domain 4 64 1.1E-22 T 11-11-2016 vm_RS10320 ad67f1ff114a9114854ceef373ddbc55 474 Pfam PF04055 Radical SAM superfamily 151 325 5.0E-28 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS10320 ad67f1ff114a9114854ceef373ddbc55 474 Gene3D G3DSA:3.80.30.20 146 377 3.7E-79 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe vm_RS10320 ad67f1ff114a9114854ceef373ddbc55 474 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 151 171 - T 11-11-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 vm_RS10320 ad67f1ff114a9114854ceef373ddbc55 474 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 4 437 5.3E-151 T 11-11-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 vm_RS10320 ad67f1ff114a9114854ceef373ddbc55 474 SMART SM00729 147 367 2.1E-64 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 vm_RS10320 ad67f1ff114a9114854ceef373ddbc55 474 Pfam PF00919 Uncharacterized protein family UPF0004 4 104 2.9E-29 T 11-11-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 vm_RS10320 ad67f1ff114a9114854ceef373ddbc55 474 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 440 4.9E-199 T 11-11-2016 vm_RS10320 ad67f1ff114a9114854ceef373ddbc55 474 Pfam PF01938 TRAM domain 379 440 1.3E-17 T 11-11-2016 IPR002792 TRAM domain vm_RS10320 ad67f1ff114a9114854ceef373ddbc55 474 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 3 440 72.844 T 11-11-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 vm_RS10320 ad67f1ff114a9114854ceef373ddbc55 474 SUPERFAMILY SSF102114 123 374 7.98E-62 T 11-11-2016 vm_RS13695 18b52eb80e63e47c4c5e2e4bdc40d6f8 153 Gene3D G3DSA:3.40.1550.10 1 153 9.9E-44 T 11-11-2016 IPR028976 CheC-like domain vm_RS13695 18b52eb80e63e47c4c5e2e4bdc40d6f8 153 SUPERFAMILY SSF103039 1 153 6.8E-38 T 11-11-2016 IPR028976 CheC-like domain vm_RS13695 18b52eb80e63e47c4c5e2e4bdc40d6f8 153 Pfam PF13690 Chemotaxis phosphatase CheX 42 139 4.0E-22 T 11-11-2016 IPR028051 Chemotaxis phosphatase CheX-like domain vm_RS13245 06f364d867014dd54ac405ea9f02b59b 311 TIGRFAM TIGR01772 MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 2 311 3.4E-129 T 11-11-2016 IPR010097 Malate dehydrogenase, type 1 GO:0006108|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263|Reactome: R-HSA-71403 vm_RS13245 06f364d867014dd54ac405ea9f02b59b 311 PIRSF PIRSF000102 1 308 2.0E-61 T 11-11-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 vm_RS13245 06f364d867014dd54ac405ea9f02b59b 311 Gene3D G3DSA:3.90.110.10 147 311 6.2E-63 T 11-11-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 vm_RS13245 06f364d867014dd54ac405ea9f02b59b 311 Hamap MF_01516 Malate dehydrogenase [mdh]. 1 311 57.83 T 11-11-2016 IPR023958 Malate dehydrogenase, type 1, bacterial GO:0006099|GO:0030060|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 vm_RS13245 06f364d867014dd54ac405ea9f02b59b 311 SUPERFAMILY SSF56327 146 310 2.62E-42 T 11-11-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 vm_RS13245 06f364d867014dd54ac405ea9f02b59b 311 SUPERFAMILY SSF51735 1 145 4.25E-39 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS13245 06f364d867014dd54ac405ea9f02b59b 311 ProSitePatterns PS00068 Malate dehydrogenase active site signature. 146 158 - T 11-11-2016 IPR001252 Malate dehydrogenase, active site GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383|Reactome: R-HSA-70263 vm_RS13245 06f364d867014dd54ac405ea9f02b59b 311 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 1 145 1.6E-46 T 11-11-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 vm_RS13245 06f364d867014dd54ac405ea9f02b59b 311 Gene3D G3DSA:3.40.50.720 1 146 4.7E-58 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS13245 06f364d867014dd54ac405ea9f02b59b 311 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 147 310 2.0E-48 T 11-11-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 Pfam PF02863 Arginine repressor, C-terminal domain 82 145 2.8E-20 T 11-11-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 TIGRFAM TIGR01529 argR_whole: arginine repressor 10 151 1.2E-41 T 11-11-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 PRINTS PR01467 Bacterial arginine repressor signature 42 57 2.6E-23 T 11-11-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 PRINTS PR01467 Bacterial arginine repressor signature 121 136 2.6E-23 T 11-11-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 PRINTS PR01467 Bacterial arginine repressor signature 90 103 2.6E-23 T 11-11-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 PRINTS PR01467 Bacterial arginine repressor signature 25 38 2.6E-23 T 11-11-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 SUPERFAMILY SSF46785 3 76 3.54E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 Pfam PF01316 Arginine repressor, DNA binding domain 6 74 6.0E-23 T 11-11-2016 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 SUPERFAMILY SSF55252 82 151 1.57E-18 T 11-11-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 Hamap MF_00173 Arginine repressor [argR]. 1 155 58.17 T 11-11-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 Gene3D G3DSA:3.30.1360.40 80 154 2.2E-24 T 11-11-2016 IPR024946 Arginine repressor C-terminal-like domain vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 Gene3D G3DSA:1.10.10.10 2 77 2.4E-34 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS13250 b4206259d854bae2c6a8fb02742c90d6 156 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 89 145 2.0E-21 T 11-11-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 vm_RS11785 6c34248e33f224dd9b2f08d2bd37d3e3 98 SUPERFAMILY SSF46785 9 97 4.09E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11785 6c34248e33f224dd9b2f08d2bd37d3e3 98 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 1.6E-15 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 vm_RS11785 6c34248e33f224dd9b2f08d2bd37d3e3 98 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 36 47 1.6E-15 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 vm_RS11785 6c34248e33f224dd9b2f08d2bd37d3e3 98 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 49 64 1.6E-15 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 vm_RS11785 6c34248e33f224dd9b2f08d2bd37d3e3 98 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 64 79 1.6E-15 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 vm_RS11785 6c34248e33f224dd9b2f08d2bd37d3e3 98 Pfam PF01022 Bacterial regulatory protein, arsR family 23 68 4.7E-17 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 vm_RS11785 6c34248e33f224dd9b2f08d2bd37d3e3 98 Gene3D G3DSA:1.10.10.10 2 97 1.2E-36 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11785 6c34248e33f224dd9b2f08d2bd37d3e3 98 SMART SM00418 15 93 6.1E-29 T 11-11-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 564 586 - T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 Pfam PF08343 Ribonucleotide reductase N-terminal 14 95 2.7E-28 T 11-11-2016 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 SUPERFAMILY SSF48168 13 172 2.62E-54 T 11-11-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 97 169 1.3E-9 T 11-11-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 101 694 1.5E-162 T 11-11-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 SUPERFAMILY SSF51998 173 696 1.04E-182 T 11-11-2016 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 PRINTS PR01183 Ribonucleotide reductase large chain signature 424 447 1.7E-32 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 PRINTS PR01183 Ribonucleotide reductase large chain signature 463 485 1.7E-32 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 PRINTS PR01183 Ribonucleotide reductase large chain signature 249 268 1.7E-32 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 PRINTS PR01183 Ribonucleotide reductase large chain signature 491 514 1.7E-32 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 PRINTS PR01183 Ribonucleotide reductase large chain signature 380 391 1.7E-32 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 PRINTS PR01183 Ribonucleotide reductase large chain signature 575 602 1.7E-32 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 13 712 0.0 T 11-11-2016 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 Pfam PF02867 Ribonucleotide reductase, barrel domain 175 691 1.4E-142 T 11-11-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 Gene3D G3DSA:3.20.70.20 106 295 1.6E-56 T 11-11-2016 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 Gene3D G3DSA:3.20.70.20 575 689 1.6E-56 T 11-11-2016 vm_RS07100 9d46bfc54743257ac968cd9e7fb78f2c 712 Gene3D G3DSA:3.20.70.20 348 511 1.6E-56 T 11-11-2016 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 15 26 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 Gene3D G3DSA:2.20.28.20 145 176 5.5E-20 T 11-11-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 SUPERFAMILY SSF47323 389 546 1.21E-44 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 Gene3D G3DSA:1.10.730.10 380 534 1.0E-40 T 11-11-2016 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 PRINTS PR01041 Methionyl-tRNA synthetase signature 251 262 6.6E-25 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 PRINTS PR01041 Methionyl-tRNA synthetase signature 10 23 6.6E-25 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 PRINTS PR01041 Methionyl-tRNA synthetase signature 90 101 6.6E-25 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 PRINTS PR01041 Methionyl-tRNA synthetase signature 384 395 6.6E-25 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 PRINTS PR01041 Methionyl-tRNA synthetase signature 291 306 6.6E-25 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 PRINTS PR01041 Methionyl-tRNA synthetase signature 42 56 6.6E-25 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 542 682 6.5E-48 T 11-11-2016 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 SUPERFAMILY SSF50249 578 682 8.57E-33 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS09930 a24cd038c833dee1a448317ff326d096 683 SUPERFAMILY SSF52374 176 387 1.02E-100 T 11-11-2016 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 SUPERFAMILY SSF52374 4 141 1.02E-100 T 11-11-2016 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 9 535 4.5E-200 T 11-11-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 Hamap MF_00098 Methionine--tRNA ligase [metG]. 6 545 41.366 T 11-11-2016 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 Gene3D G3DSA:3.40.50.620 183 379 2.4E-89 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS09930 a24cd038c833dee1a448317ff326d096 683 Gene3D G3DSA:3.40.50.620 6 144 2.4E-89 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS09930 a24cd038c833dee1a448317ff326d096 683 Pfam PF09334 tRNA synthetases class I (M) 9 396 4.1E-164 T 11-11-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 Pfam PF01588 Putative tRNA binding domain 588 680 5.3E-25 T 11-11-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 vm_RS09930 a24cd038c833dee1a448317ff326d096 683 Gene3D G3DSA:2.40.50.140 576 682 7.7E-44 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS09930 a24cd038c833dee1a448317ff326d096 683 SUPERFAMILY SSF57770 142 176 5.89E-13 T 11-11-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 vm_RS12120 a060fd8ab7b8e8c3280c7928bbc17dde 573 Gene3D G3DSA:2.60.40.10 4 91 3.5E-19 T 11-11-2016 IPR013783 Immunoglobulin-like fold vm_RS12120 a060fd8ab7b8e8c3280c7928bbc17dde 573 SUPERFAMILY SSF81296 3 91 2.45E-16 T 11-11-2016 IPR014756 Immunoglobulin E-set vm_RS12120 a060fd8ab7b8e8c3280c7928bbc17dde 573 Pfam PF02927 Cellulase N-terminal ig-like domain 5 84 7.1E-11 T 11-11-2016 IPR004197 Cellulase, Ig-like domain GO:0005975|GO:0008810 vm_RS12120 a060fd8ab7b8e8c3280c7928bbc17dde 573 SUPERFAMILY SSF48208 80 564 8.35E-94 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 vm_RS12120 a060fd8ab7b8e8c3280c7928bbc17dde 573 Gene3D G3DSA:1.50.10.10 109 560 9.2E-75 T 11-11-2016 IPR012341 Six-hairpin glycosidase GO:0003824 vm_RS12120 a060fd8ab7b8e8c3280c7928bbc17dde 573 Pfam PF00759 Glycosyl hydrolase family 9 100 503 1.6E-23 T 11-11-2016 IPR001701 Glycoside hydrolase family 9 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 vm_RS04950 7f5c10f12f52bb44b1d220e129123e87 105 Pfam PF13467 Ribbon-helix-helix domain 16 83 4.1E-24 T 11-11-2016 IPR027373 Ribbon-helix-helix domain vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 215 370 5.3E-23 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 Pfam PF01926 50S ribosome-binding GTPase 217 307 7.3E-24 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 Gene3D G3DSA:3.40.50.300 210 245 1.4E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 10 453 4.8E-103 T 11-11-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 SUPERFAMILY SSF116878 120 219 2.48E-53 T 11-11-2016 vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 SUPERFAMILY SSF116878 378 453 2.48E-53 T 11-11-2016 vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 4 453 33.162 T 11-11-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 Gene3D G3DSA:3.30.1360.120 2 120 1.2E-43 T 11-11-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 SUPERFAMILY SSF52540 187 371 1.67E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 SUPERFAMILY SSF52540 70 151 1.67E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 Pfam PF10396 GTP-binding protein TrmE N-terminus 5 119 9.4E-36 T 11-11-2016 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 Pfam PF12631 MnmE helical domain 122 450 2.2E-62 T 11-11-2016 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 Gene3D G3DSA:3.40.50.300 285 375 1.1E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 Gene3D G3DSA:1.20.120.430 383 453 6.8E-61 T 11-11-2016 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 Gene3D G3DSA:1.20.120.430 121 181 6.8E-61 T 11-11-2016 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 vm_RS15040 121bec777be4bd55cb20d3b67f5bd33b 453 Gene3D G3DSA:1.20.120.430 246 270 6.8E-61 T 11-11-2016 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 vm_RS07250 5f6d723d877cbec8dd26d8a0c7465caf 67 PIRSF PIRSF037225 1 65 3.3E-26 T 11-11-2016 IPR017143 Uncharacterised conserved protein UCP037225 vm_RS07250 5f6d723d877cbec8dd26d8a0c7465caf 67 Pfam PF14255 Cysteine-rich CPXCG 10 60 1.1E-20 T 11-11-2016 IPR025990 Cysteine-rich CPXCG protein vm_RS02625 e0c7ccc0584109f78152fbecdcd40324 190 Pfam PF04542 Sigma-70 region 2 25 92 7.6E-19 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS02625 e0c7ccc0584109f78152fbecdcd40324 190 Gene3D G3DSA:1.10.10.10 125 188 1.0E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS02625 e0c7ccc0584109f78152fbecdcd40324 190 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 2 190 1.7E-101 T 11-11-2016 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS02625 e0c7ccc0584109f78152fbecdcd40324 190 Pfam PF08281 Sigma-70, region 4 134 181 2.1E-17 T 11-11-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS02625 e0c7ccc0584109f78152fbecdcd40324 190 Gene3D G3DSA:1.10.1740.10 2 112 7.5E-39 T 11-11-2016 vm_RS02625 e0c7ccc0584109f78152fbecdcd40324 190 SUPERFAMILY SSF88946 2 108 2.2E-33 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS02625 e0c7ccc0584109f78152fbecdcd40324 190 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 185 4.7E-33 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS02625 e0c7ccc0584109f78152fbecdcd40324 190 SUPERFAMILY SSF88659 124 185 2.43E-17 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS05665 e754ff2843847aef1a55e1180a7e3934 335 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 18 323 4.1E-114 T 11-11-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 vm_RS05665 e754ff2843847aef1a55e1180a7e3934 335 SUPERFAMILY SSF52540 51 198 7.44E-11 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05665 e754ff2843847aef1a55e1180a7e3934 335 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 23 325 1.4E-97 T 11-11-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 vm_RS05665 e754ff2843847aef1a55e1180a7e3934 335 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 1 328 40.571 T 11-11-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130 vm_RS05665 e754ff2843847aef1a55e1180a7e3934 335 Gene3D G3DSA:3.40.50.300 51 137 9.6E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00095 93c58bab9a6c1bf9944f0e2100b944a1 312 TIGRFAM TIGR01122 ilvE_I: branched-chain amino acid aminotransferase 10 307 4.2E-145 T 11-11-2016 IPR005785 Branched-chain amino acid aminotransferase I GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108 vm_RS00095 93c58bab9a6c1bf9944f0e2100b944a1 312 Gene3D G3DSA:3.30.470.10 7 130 2.8E-42 T 11-11-2016 vm_RS00095 93c58bab9a6c1bf9944f0e2100b944a1 312 SUPERFAMILY SSF56752 7 307 1.16E-103 T 11-11-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 vm_RS00095 93c58bab9a6c1bf9944f0e2100b944a1 312 ProSitePatterns PS00770 Aminotransferases class-IV signature. 194 223 - T 11-11-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 vm_RS00095 93c58bab9a6c1bf9944f0e2100b944a1 312 Pfam PF01063 Amino-transferase class IV 36 268 6.8E-47 T 11-11-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 vm_RS00095 93c58bab9a6c1bf9944f0e2100b944a1 312 Gene3D G3DSA:3.20.10.10 134 295 4.8E-59 T 11-11-2016 vm_RS00740 b1f9a373eeaaa71b78b214f00b1449f1 151 Gene3D G3DSA:3.30.70.330 48 144 1.2E-27 T 11-11-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 vm_RS00740 b1f9a373eeaaa71b78b214f00b1449f1 151 SUPERFAMILY SSF54928 54 142 2.01E-26 T 11-11-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 vm_RS00740 b1f9a373eeaaa71b78b214f00b1449f1 151 Pfam PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 2.8E-18 T 11-11-2016 IPR000504 RNA recognition motif domain GO:0003676 vm_RS00740 b1f9a373eeaaa71b78b214f00b1449f1 151 SMART SM00360 64 136 2.8E-21 T 11-11-2016 IPR000504 RNA recognition motif domain GO:0003676 vm_RS01600 a8fd05907ef1785f4a114f6e2495d7da 171 TIGRFAM TIGR01935 NOT-MenG: RraA family 5 154 8.8E-68 T 11-11-2016 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 vm_RS01600 a8fd05907ef1785f4a114f6e2495d7da 171 Pfam PF03737 Demethylmenaquinone methyltransferase 6 153 2.7E-37 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein vm_RS01600 a8fd05907ef1785f4a114f6e2495d7da 171 SUPERFAMILY SSF89562 1 160 3.14E-45 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein vm_RS01600 a8fd05907ef1785f4a114f6e2495d7da 171 Hamap MF_00471 Regulator of ribonuclease activity A [rraA]. 1 161 46.972 T 11-11-2016 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 vm_RS01600 a8fd05907ef1785f4a114f6e2495d7da 171 TIGRFAM TIGR02998 RraA_entero: regulator of ribonuclease activity A 1 159 4.2E-82 T 11-11-2016 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria GO:0008428|GO:0051252 vm_RS01600 a8fd05907ef1785f4a114f6e2495d7da 171 Gene3D G3DSA:3.50.30.40 1 158 1.2E-46 T 11-11-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein vm_RS08375 c38f6f962955b1328321694443d4e243 627 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 463 490 9.1E-22 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS08375 c38f6f962955b1328321694443d4e243 627 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 273 293 9.1E-22 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS08375 c38f6f962955b1328321694443d4e243 627 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 492 521 9.1E-22 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS08375 c38f6f962955b1328321694443d4e243 627 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 430 625 8.2E-47 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS08375 c38f6f962955b1328321694443d4e243 627 Pfam PF02743 Cache domain 38 258 2.7E-27 T 11-11-2016 IPR033479 Double Cache domain 1 vm_RS08375 c38f6f962955b1328321694443d4e243 627 SUPERFAMILY SSF103190 85 175 9.42E-11 T 11-11-2016 IPR029151 Periplasmic sensor domain-like vm_RS08375 c38f6f962955b1328321694443d4e243 627 Gene3D G3DSA:3.30.450.20 64 168 2.1E-27 T 11-11-2016 vm_RS08375 c38f6f962955b1328321694443d4e243 627 SMART SM00283 365 626 4.4E-65 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS08375 c38f6f962955b1328321694443d4e243 627 Gene3D G3DSA:1.10.287.950 380 597 1.8E-56 T 11-11-2016 vm_RS08375 c38f6f962955b1328321694443d4e243 627 SMART SM00304 352 403 15.0 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08375 c38f6f962955b1328321694443d4e243 627 SMART SM00304 296 350 9.0E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08375 c38f6f962955b1328321694443d4e243 627 Pfam PF00672 HAMP domain 278 346 3.5E-13 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08375 c38f6f962955b1328321694443d4e243 627 SUPERFAMILY SSF58104 318 627 1.19E-76 T 11-11-2016 vm_RS08435 74e20676458f04f6117ecdea0f25648e 212 SMART SM00421 148 205 5.0E-22 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS08435 74e20676458f04f6117ecdea0f25648e 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 165 181 5.0E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS08435 74e20676458f04f6117ecdea0f25648e 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 151 165 5.0E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS08435 74e20676458f04f6117ecdea0f25648e 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 181 193 5.0E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS08435 74e20676458f04f6117ecdea0f25648e 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 165 192 - T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS08435 74e20676458f04f6117ecdea0f25648e 212 SUPERFAMILY SSF46894 141 211 1.97E-21 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS08435 74e20676458f04f6117ecdea0f25648e 212 Gene3D G3DSA:1.10.10.10 156 211 1.3E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS08435 74e20676458f04f6117ecdea0f25648e 212 SUPERFAMILY SSF52172 4 134 7.26E-36 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS08435 74e20676458f04f6117ecdea0f25648e 212 Gene3D G3DSA:3.40.50.2300 3 155 1.2E-39 T 11-11-2016 vm_RS08435 74e20676458f04f6117ecdea0f25648e 212 Pfam PF00072 Response regulator receiver domain 7 119 3.5E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS08435 74e20676458f04f6117ecdea0f25648e 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 150 205 9.2E-20 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS08435 74e20676458f04f6117ecdea0f25648e 212 SMART SM00448 5 118 1.7E-31 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS14395 39b3377814fff4f133fbe9e2444f4a95 349 Gene3D G3DSA:3.40.50.2000 30 173 4.8E-11 T 11-11-2016 vm_RS14395 39b3377814fff4f133fbe9e2444f4a95 349 Gene3D G3DSA:3.40.50.2000 190 320 1.5E-17 T 11-11-2016 vm_RS14395 39b3377814fff4f133fbe9e2444f4a95 349 SUPERFAMILY SSF53756 30 335 5.89E-43 T 11-11-2016 vm_RS14395 39b3377814fff4f133fbe9e2444f4a95 349 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 105 327 2.1E-16 T 11-11-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 vm_RS02700 8321be59181632335cfc0aa2e7db670b 440 Gene3D G3DSA:3.40.50.150 258 437 4.5E-58 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS02700 8321be59181632335cfc0aa2e7db670b 440 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 370 400 - T 11-11-2016 IPR030390 RNA methyltransferase TrmA, active site vm_RS02700 8321be59181632335cfc0aa2e7db670b 440 SUPERFAMILY SSF50249 17 74 4.85E-14 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS02700 8321be59181632335cfc0aa2e7db670b 440 Gene3D G3DSA:2.40.50.140 11 88 4.2E-28 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS02700 8321be59181632335cfc0aa2e7db670b 440 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 19 439 68.061 T 11-11-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 vm_RS02700 8321be59181632335cfc0aa2e7db670b 440 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 100 438 3.1E-34 T 11-11-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 vm_RS02700 8321be59181632335cfc0aa2e7db670b 440 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 25 431 5.2E-130 T 11-11-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 vm_RS02700 8321be59181632335cfc0aa2e7db670b 440 SUPERFAMILY SSF53335 76 438 2.84E-79 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS02700 8321be59181632335cfc0aa2e7db670b 440 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 421 431 - T 11-11-2016 IPR030391 RNA methyltransferase TrmA, conserved site vm_RS02700 8321be59181632335cfc0aa2e7db670b 440 Pfam PF01938 TRAM domain 17 68 9.6E-11 T 11-11-2016 IPR002792 TRAM domain vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 ProSitePatterns PS01312 SecA family signature. 501 516 - T 11-11-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 Gene3D G3DSA:1.10.3060.10 648 831 2.0E-59 T 11-11-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 PRINTS PR00906 SecA protein signature 170 190 1.6E-71 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 PRINTS PR00906 SecA protein signature 414 427 1.6E-71 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 PRINTS PR00906 SecA protein signature 340 362 1.6E-71 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 PRINTS PR00906 SecA protein signature 63 87 1.6E-71 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 PRINTS PR00906 SecA protein signature 101 115 1.6E-71 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 PRINTS PR00906 SecA protein signature 117 127 1.6E-71 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 PRINTS PR00906 SecA protein signature 377 394 1.6E-71 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 Pfam PF01043 SecA preprotein cross-linking domain 232 359 1.2E-38 T 11-11-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 SUPERFAMILY SSF52540 418 610 1.87E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 Gene3D G3DSA:3.40.50.300 418 619 2.6E-90 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 SUPERFAMILY SSF81886 620 840 1.96E-84 T 11-11-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 SUPERFAMILY SSF81886 879 891 1.96E-84 T 11-11-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 SMART SM00957 6 403 0.0 T 11-11-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 Pfam PF02810 SEC-C motif 883 901 1.7E-10 T 11-11-2016 IPR004027 SEC-C motif vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 SMART SM00958 228 359 9.0E-83 T 11-11-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 Pfam PF07516 SecA Wing and Scaffold domain 617 829 2.4E-67 T 11-11-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 20.07 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 Gene3D G3DSA:3.40.50.300 2 228 4.7E-125 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 Gene3D G3DSA:3.40.50.300 370 417 4.7E-125 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 Gene3D G3DSA:3.90.1440.10 230 369 8.1E-47 T 11-11-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 SUPERFAMILY SSF52540 369 416 1.47E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 SUPERFAMILY SSF52540 5 228 1.47E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 SUPERFAMILY SSF81767 227 369 3.79E-43 T 11-11-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 817 0.0 T 11-11-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 vm_RS03010 5de80a258db286cd1133e68228a1fc73 903 Pfam PF07517 SecA DEAD-like domain 7 403 7.3E-133 T 11-11-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 vm_RS01505 01105183ad2763107cc56805df283439 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 354 460 3.7E-18 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS01505 01105183ad2763107cc56805df283439 462 Pfam PF00672 HAMP domain 174 240 1.5E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS01505 01105183ad2763107cc56805df283439 462 SMART SM00387 351 461 3.2E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS01505 01105183ad2763107cc56805df283439 462 Pfam PF00512 His Kinase A (phospho-acceptor) domain 246 306 2.0E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS01505 01105183ad2763107cc56805df283439 462 SUPERFAMILY SSF47384 230 307 3.34E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS01505 01105183ad2763107cc56805df283439 462 Pfam PF16527 Two-component sensor protein CpxA, periplasmic domain 36 169 3.3E-56 T 11-11-2016 IPR032404 Two-component sensor protein CpxA, periplasmic domain vm_RS01505 01105183ad2763107cc56805df283439 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 414 1.7E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS01505 01105183ad2763107cc56805df283439 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 1.7E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS01505 01105183ad2763107cc56805df283439 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 1.7E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS01505 01105183ad2763107cc56805df283439 462 SMART SM00388 245 307 1.3E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS01505 01105183ad2763107cc56805df283439 462 SUPERFAMILY SSF55874 297 459 1.7E-34 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS01505 01105183ad2763107cc56805df283439 462 Gene3D G3DSA:1.10.287.130 235 303 1.3E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS01505 01105183ad2763107cc56805df283439 462 SMART SM00304 191 244 2.9E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS01505 01105183ad2763107cc56805df283439 462 Gene3D G3DSA:3.30.565.10 310 460 6.6E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS06375 3c8ef721c843ec4f341dd9b2f1168a2f 1491 SUPERFAMILY SSF52540 22 55 2.83E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06375 3c8ef721c843ec4f341dd9b2f1168a2f 1491 SUPERFAMILY SSF52540 1284 1434 2.83E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06375 3c8ef721c843ec4f341dd9b2f1168a2f 1491 Pfam PF16330 MukB hinge domain 646 811 1.0E-73 T 11-11-2016 IPR032520 MukB, hinge domain vm_RS06375 3c8ef721c843ec4f341dd9b2f1168a2f 1491 Hamap MF_01800 Chromosome partition protein MukB [mukB]. 1 1472 10.827 T 11-11-2016 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 vm_RS06375 3c8ef721c843ec4f341dd9b2f1168a2f 1491 Gene3D G3DSA:3.40.1140.10 1 225 2.6E-44 T 11-11-2016 vm_RS06375 3c8ef721c843ec4f341dd9b2f1168a2f 1491 Pfam PF04310 MukB N-terminal 2 227 1.4E-122 T 11-11-2016 IPR007406 MukB, N-terminal domain GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 vm_RS06375 3c8ef721c843ec4f341dd9b2f1168a2f 1491 PIRSF PIRSF005246 1 1487 0.0 T 11-11-2016 IPR012090 Chromosome partition protein MukB GO:0003677|GO:0005524|GO:0007059|GO:0009295|GO:0030261 vm_RS06375 3c8ef721c843ec4f341dd9b2f1168a2f 1491 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1337 1425 5.5E-15 T 11-11-2016 vm_RS06375 3c8ef721c843ec4f341dd9b2f1168a2f 1491 SUPERFAMILY SSF52540 23 224 1.23E-22 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08630 b3ecf1aa4d9b6d7f45dc9b00468b2196 536 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 339 534 9.0E-44 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS08630 b3ecf1aa4d9b6d7f45dc9b00468b2196 536 Pfam PF17200 Single Cache domain 2 42 182 5.5E-28 T 11-11-2016 IPR033480 Single Cache domain 2 vm_RS08630 b3ecf1aa4d9b6d7f45dc9b00468b2196 536 Pfam PF00672 HAMP domain 188 253 4.2E-14 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08630 b3ecf1aa4d9b6d7f45dc9b00468b2196 536 SMART SM01049 36 126 1.2E-22 T 11-11-2016 IPR033480 Single Cache domain 2 vm_RS08630 b3ecf1aa4d9b6d7f45dc9b00468b2196 536 SMART SM00283 274 535 9.4E-67 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS08630 b3ecf1aa4d9b6d7f45dc9b00468b2196 536 SUPERFAMILY SSF58104 227 536 1.83E-69 T 11-11-2016 vm_RS08630 b3ecf1aa4d9b6d7f45dc9b00468b2196 536 Gene3D G3DSA:3.30.450.20 26 177 1.7E-37 T 11-11-2016 vm_RS08630 b3ecf1aa4d9b6d7f45dc9b00468b2196 536 SMART SM00304 207 259 6.4E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08630 b3ecf1aa4d9b6d7f45dc9b00468b2196 536 SMART SM00304 260 312 31.0 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08630 b3ecf1aa4d9b6d7f45dc9b00468b2196 536 Gene3D G3DSA:1.10.287.950 289 505 6.0E-55 T 11-11-2016 vm_RS03705 b00fb3ab415f89ac03b53d262222d1f2 281 Hamap MF_01119 UPF0294 protein YafD [yafD]. 1 278 54.495 T 11-11-2016 IPR022958 Uncharacterised protein family UPF0294 vm_RS03705 b00fb3ab415f89ac03b53d262222d1f2 281 Gene3D G3DSA:3.60.10.10 60 276 9.3E-8 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase vm_RS03705 b00fb3ab415f89ac03b53d262222d1f2 281 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 66 270 2.9E-14 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase vm_RS03705 b00fb3ab415f89ac03b53d262222d1f2 281 SUPERFAMILY SSF56219 59 275 6.94E-25 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase vm_RS01105 676a561604ed94d08da613f01f8de0d6 262 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 201 215 1.2E-9 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS01105 676a561604ed94d08da613f01f8de0d6 262 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 215 231 1.2E-9 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS01105 676a561604ed94d08da613f01f8de0d6 262 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 231 243 1.2E-9 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS01105 676a561604ed94d08da613f01f8de0d6 262 Gene3D G3DSA:1.10.10.10 195 248 4.4E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS01105 676a561604ed94d08da613f01f8de0d6 262 SUPERFAMILY SSF46894 194 248 1.63E-14 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS01105 676a561604ed94d08da613f01f8de0d6 262 SMART SM00421 198 256 7.5E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS01105 676a561604ed94d08da613f01f8de0d6 262 Pfam PF00196 Bacterial regulatory proteins, luxR family 200 248 3.5E-13 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS01105 676a561604ed94d08da613f01f8de0d6 262 ProSitePatterns PS00622 LuxR-type HTH domain signature. 215 242 - T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS02585 97b0bcd64992dd79b10802ea200d36f1 402 Pfam PF01494 FAD binding domain 15 348 7.5E-23 T 11-11-2016 IPR002938 FAD-binding domain GO:0071949 vm_RS02585 97b0bcd64992dd79b10802ea200d36f1 402 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 16 398 6.8E-159 T 11-11-2016 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 vm_RS02585 97b0bcd64992dd79b10802ea200d36f1 402 Gene3D G3DSA:3.50.50.60 280 364 2.4E-36 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02585 97b0bcd64992dd79b10802ea200d36f1 402 Gene3D G3DSA:3.50.50.60 14 194 2.4E-36 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02585 97b0bcd64992dd79b10802ea200d36f1 402 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 306 319 - T 11-11-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 vm_RS02585 97b0bcd64992dd79b10802ea200d36f1 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 16 38 5.3E-11 T 11-11-2016 vm_RS02585 97b0bcd64992dd79b10802ea200d36f1 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 292 307 5.3E-11 T 11-11-2016 vm_RS02585 97b0bcd64992dd79b10802ea200d36f1 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 168 183 5.3E-11 T 11-11-2016 vm_RS02585 97b0bcd64992dd79b10802ea200d36f1 402 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 307 323 5.3E-11 T 11-11-2016 vm_RS02585 97b0bcd64992dd79b10802ea200d36f1 402 SUPERFAMILY SSF51905 15 189 9.72E-56 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02585 97b0bcd64992dd79b10802ea200d36f1 402 SUPERFAMILY SSF51905 279 393 9.72E-56 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02585 97b0bcd64992dd79b10802ea200d36f1 402 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 16 397 3.9E-125 T 11-11-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 vm_RS09910 3709cca7de06225f3001372e760a79bc 201 PIRSF PIRSF015617 6 201 1.6E-64 T 11-11-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 vm_RS09910 3709cca7de06225f3001372e760a79bc 201 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 7 26 3.3E-7 T 11-11-2016 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 vm_RS09910 3709cca7de06225f3001372e760a79bc 201 Gene3D G3DSA:3.40.50.300 8 201 1.2E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09910 3709cca7de06225f3001372e760a79bc 201 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 29 201 2.9E-69 T 11-11-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 vm_RS09910 3709cca7de06225f3001372e760a79bc 201 SUPERFAMILY SSF52540 12 201 9.87E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09910 3709cca7de06225f3001372e760a79bc 201 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 32 201 1.4E-57 T 11-11-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 vm_RS01715 1e94f1971627db0ee6e791f08c80a806 378 Pfam PF07687 Peptidase dimerisation domain 174 285 2.9E-25 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain vm_RS01715 1e94f1971627db0ee6e791f08c80a806 378 Hamap MF_01108 Acetylornithine deacetylase [argE]. 1 378 62.596 T 11-11-2016 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 vm_RS01715 1e94f1971627db0ee6e791f08c80a806 378 SUPERFAMILY SSF55031 177 290 3.59E-23 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain vm_RS01715 1e94f1971627db0ee6e791f08c80a806 378 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 8 371 7.3E-124 T 11-11-2016 IPR010169 Acetylornithine deacetylase ArgE GO:0005737|GO:0006526|GO:0008777 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154 vm_RS01715 1e94f1971627db0ee6e791f08c80a806 378 Pfam PF01546 Peptidase family M20/M25/M40 72 374 9.1E-32 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 vm_RS01715 1e94f1971627db0ee6e791f08c80a806 378 SUPERFAMILY SSF53187 4 176 1.03E-53 T 11-11-2016 vm_RS01715 1e94f1971627db0ee6e791f08c80a806 378 SUPERFAMILY SSF53187 301 377 1.03E-53 T 11-11-2016 vm_RS01715 1e94f1971627db0ee6e791f08c80a806 378 Gene3D G3DSA:3.40.630.10 319 377 6.8E-58 T 11-11-2016 vm_RS01715 1e94f1971627db0ee6e791f08c80a806 378 Gene3D G3DSA:3.40.630.10 6 185 6.8E-58 T 11-11-2016 vm_RS01715 1e94f1971627db0ee6e791f08c80a806 378 Gene3D G3DSA:3.30.70.360 186 287 4.9E-27 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain vm_RS01715 1e94f1971627db0ee6e791f08c80a806 378 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 71 80 - T 11-11-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 vm_RS01715 1e94f1971627db0ee6e791f08c80a806 378 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 106 143 - T 11-11-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 vm_RS10855 f049fdeeb253f0ba32e6a97ef12c3ba5 294 Gene3D G3DSA:3.40.50.10330 3 151 7.7E-38 T 11-11-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 vm_RS10855 f049fdeeb253f0ba32e6a97ef12c3ba5 294 Pfam PF01513 ATP-NAD kinase 8 273 7.3E-70 T 11-11-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 vm_RS10855 f049fdeeb253f0ba32e6a97ef12c3ba5 294 SUPERFAMILY SSF111331 8 290 1.96E-91 T 11-11-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain vm_RS10855 f049fdeeb253f0ba32e6a97ef12c3ba5 294 Gene3D G3DSA:2.60.200.30 152 262 8.9E-42 T 11-11-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 vm_RS10855 f049fdeeb253f0ba32e6a97ef12c3ba5 294 Hamap MF_00361 NAD kinase [nadK]. 6 289 33.274 T 11-11-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 vm_RS00185 7f56a6d681d8fd74e73c4acadb203420 375 SMART SM00257 39 87 1.5E-6 T 11-11-2016 IPR018392 LysM domain vm_RS00185 7f56a6d681d8fd74e73c4acadb203420 375 Gene3D G3DSA:3.10.350.10 37 86 7.3E-8 T 11-11-2016 IPR018392 LysM domain vm_RS00185 7f56a6d681d8fd74e73c4acadb203420 375 Pfam PF01476 LysM domain 40 85 2.9E-12 T 11-11-2016 IPR018392 LysM domain vm_RS00185 7f56a6d681d8fd74e73c4acadb203420 375 SUPERFAMILY SSF54106 38 86 3.4E-7 T 11-11-2016 IPR018392 LysM domain vm_RS07190 ebc1edf48ceeffe388d969b0d62ac53b 293 Gene3D G3DSA:1.10.3720.10 61 290 5.6E-42 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS07190 ebc1edf48ceeffe388d969b0d62ac53b 293 SUPERFAMILY SSF161098 55 282 1.7E-42 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS07190 ebc1edf48ceeffe388d969b0d62ac53b 293 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 128 288 3.1E-11 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS05220 7ff404478aeba123858db33e52d8a44b 206 Pfam PF01810 LysE type translocator 15 203 8.8E-25 T 11-11-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 vm_RS05220 7ff404478aeba123858db33e52d8a44b 206 PIRSF PIRSF006324 1 206 5.3E-43 T 11-11-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 vm_RS08370 04cf21900dc22c4f9db0df7fc41152e0 233 Pfam PF00929 Exonuclease 45 214 2.8E-18 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS08370 04cf21900dc22c4f9db0df7fc41152e0 233 Gene3D G3DSA:3.30.420.10 37 222 2.5E-45 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS08370 04cf21900dc22c4f9db0df7fc41152e0 233 SUPERFAMILY SSF53098 37 220 6.46E-38 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS08370 04cf21900dc22c4f9db0df7fc41152e0 233 SMART SM00479 43 223 3.4E-22 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS04880 4c4214f7e6a9460a4d16503656172429 338 Gene3D G3DSA:3.30.160.60 302 337 5.2E-19 T 11-11-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 vm_RS04880 4c4214f7e6a9460a4d16503656172429 338 Pfam PF02618 YceG-like family 43 328 5.8E-84 T 11-11-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like vm_RS04880 4c4214f7e6a9460a4d16503656172429 338 Gene3D G3DSA:3.30.160.60 72 110 3.1E-20 T 11-11-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 vm_RS04880 4c4214f7e6a9460a4d16503656172429 338 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 5 336 5.9E-97 T 11-11-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like vm_RS00880 6394259e3de4accc70ae8094be547809 304 Pfam PF11356 Type II secretion system protein C 33 172 6.9E-41 T 11-11-2016 IPR024961 Type II secretion system protein C, N-terminal vm_RS00880 6394259e3de4accc70ae8094be547809 304 ProSitePatterns PS01141 Bacterial type II secretion system protein C signature. 242 268 - T 11-11-2016 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 vm_RS00880 6394259e3de4accc70ae8094be547809 304 Gene3D G3DSA:2.30.42.10 249 302 2.2E-6 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS00880 6394259e3de4accc70ae8094be547809 304 PRINTS PR00810 Bacterial general secretion pathway protein C signature 258 268 4.1E-5 T 11-11-2016 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 vm_RS00880 6394259e3de4accc70ae8094be547809 304 PRINTS PR00810 Bacterial general secretion pathway protein C signature 109 118 4.1E-5 T 11-11-2016 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 vm_RS00880 6394259e3de4accc70ae8094be547809 304 SUPERFAMILY SSF50156 209 303 6.56E-18 T 11-11-2016 IPR001478 PDZ domain GO:0005515 vm_RS00880 6394259e3de4accc70ae8094be547809 304 TIGRFAM TIGR01713 typeII_sec_gspC: type II secretion system protein C 30 304 1.5E-101 T 11-11-2016 IPR001639 Type II secretion system protein C GO:0008565|GO:0015627|GO:0015628 vm_RS08620 0e18bbfc2e72572f5c15b8b9301ec40e 298 Pfam PF13084 Domain of unknown function (DUF3943) 135 244 1.3E-37 T 11-11-2016 IPR025079 Domain of unknown function DUF3943 vm_RS05325 e38dd537793165c1f07a62edfd55a182 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 5.2E-21 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS05325 e38dd537793165c1f07a62edfd55a182 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 5.2E-21 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS05325 e38dd537793165c1f07a62edfd55a182 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 5.2E-21 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS05325 e38dd537793165c1f07a62edfd55a182 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 11-11-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 vm_RS05325 e38dd537793165c1f07a62edfd55a182 90 SUPERFAMILY SSF47729 1 90 9.27E-32 T 11-11-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 vm_RS05325 e38dd537793165c1f07a62edfd55a182 90 Gene3D G3DSA:4.10.520.10 1 90 8.1E-37 T 11-11-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 vm_RS05325 e38dd537793165c1f07a62edfd55a182 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 7.5E-34 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS05325 e38dd537793165c1f07a62edfd55a182 90 SMART SM00411 1 90 3.9E-43 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS06365 2e2f7ae61538de633c8e847253cdd2f3 445 Hamap MF_01803 Chromosome partition protein MukF [mukF]. 6 445 53.708 T 11-11-2016 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 vm_RS06365 2e2f7ae61538de633c8e847253cdd2f3 445 PIRSF PIRSF018282 1 445 2.3E-243 T 11-11-2016 IPR005582 Chromosome partition protein MukF GO:0005509|GO:0006260|GO:0007059 vm_RS06365 2e2f7ae61538de633c8e847253cdd2f3 445 Pfam PF17193 MukF C-terminal domain 288 445 5.6E-78 T 11-11-2016 IPR033441 Chromosome partition protein MukF, C-terminal domain vm_RS06365 2e2f7ae61538de633c8e847253cdd2f3 445 SUPERFAMILY SSF46785 13 123 6.8E-46 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS06365 2e2f7ae61538de633c8e847253cdd2f3 445 Gene3D G3DSA:1.10.10.10 29 123 3.2E-46 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS06365 2e2f7ae61538de633c8e847253cdd2f3 445 SUPERFAMILY SSF140570 124 286 6.93E-79 T 11-11-2016 IPR033440 Chromosome partition protein MukF, middle domain vm_RS06365 2e2f7ae61538de633c8e847253cdd2f3 445 Pfam PF17192 MukF middle domain 126 286 2.7E-80 T 11-11-2016 IPR033440 Chromosome partition protein MukF, middle domain vm_RS06365 2e2f7ae61538de633c8e847253cdd2f3 445 Pfam PF03882 MukF winged-helix domain 10 122 1.3E-55 T 11-11-2016 IPR033439 Chromosome partition protein MukF, winged-helix domain vm_RS01945 d5e8f1b6ec236ee887e5ebd1562bfb17 246 Gene3D G3DSA:3.30.1330.30 2 77 1.5E-24 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like vm_RS01945 d5e8f1b6ec236ee887e5ebd1562bfb17 246 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 3 244 43.513 T 11-11-2016 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB vm_RS01945 d5e8f1b6ec236ee887e5ebd1562bfb17 246 SMART SM00967 5 81 8.6E-21 T 11-11-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 vm_RS01945 d5e8f1b6ec236ee887e5ebd1562bfb17 246 Gene3D G3DSA:3.40.1280.10 91 244 8.2E-56 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal vm_RS01945 d5e8f1b6ec236ee887e5ebd1562bfb17 246 Pfam PF00588 SpoU rRNA Methylase family 97 237 9.1E-39 T 11-11-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 vm_RS01945 d5e8f1b6ec236ee887e5ebd1562bfb17 246 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 5 79 5.5E-20 T 11-11-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 vm_RS01945 d5e8f1b6ec236ee887e5ebd1562bfb17 246 SUPERFAMILY SSF55315 3 77 1.41E-19 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like vm_RS01945 d5e8f1b6ec236ee887e5ebd1562bfb17 246 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 4 243 3.7E-86 T 11-11-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 vm_RS01945 d5e8f1b6ec236ee887e5ebd1562bfb17 246 SUPERFAMILY SSF75217 69 244 5.1E-48 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases vm_RS11435 99f8b65a7706703c453a80ff3aa2ed53 404 Pfam PF00266 Aminotransferase class-V 5 368 9.2E-89 T 11-11-2016 IPR000192 Aminotransferase class V domain vm_RS11435 99f8b65a7706703c453a80ff3aa2ed53 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 11-11-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site vm_RS11435 99f8b65a7706703c453a80ff3aa2ed53 404 SUPERFAMILY SSF53383 5 391 4.3E-116 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS11435 99f8b65a7706703c453a80ff3aa2ed53 404 PIRSF PIRSF005572 2 384 4.1E-139 T 11-11-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 vm_RS11435 99f8b65a7706703c453a80ff3aa2ed53 404 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 395 54.151 T 11-11-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 vm_RS11435 99f8b65a7706703c453a80ff3aa2ed53 404 Gene3D G3DSA:3.90.1150.10 255 374 4.8E-52 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS11435 99f8b65a7706703c453a80ff3aa2ed53 404 Gene3D G3DSA:3.40.640.10 17 254 6.6E-99 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS11435 99f8b65a7706703c453a80ff3aa2ed53 404 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 404 1.3E-231 T 11-11-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 vm_RS00570 ddccb62eef07bb9b4b3e99c50ded3933 104 SMART SM01219 1 104 5.2E-56 T 11-11-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 vm_RS00570 ddccb62eef07bb9b4b3e99c50ded3933 104 Gene3D G3DSA:3.30.920.10 1 103 2.4E-35 T 11-11-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 vm_RS00570 ddccb62eef07bb9b4b3e99c50ded3933 104 Hamap MF_00142 Protein CyaY [cyaY]. 1 103 27.39 T 11-11-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 vm_RS00570 ddccb62eef07bb9b4b3e99c50ded3933 104 ProSitePatterns PS01344 Frataxin family signature. 48 62 - T 11-11-2016 IPR020895 Frataxin conserved site Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 vm_RS00570 ddccb62eef07bb9b4b3e99c50ded3933 104 SUPERFAMILY SSF55387 1 103 1.62E-39 T 11-11-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 vm_RS00570 ddccb62eef07bb9b4b3e99c50ded3933 104 Pfam PF01491 Frataxin-like domain 1 100 1.1E-30 T 11-11-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 vm_RS00570 ddccb62eef07bb9b4b3e99c50ded3933 104 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 2 103 8.9E-43 T 11-11-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 Reactome: R-HSA-1268020|Reactome: R-HSA-1362409 vm_RS03295 eceb0012cc6d87ee0ddfebf44e1883f1 363 Pfam PF11814 Peptidase_C39 like family 157 359 8.8E-77 T 11-11-2016 IPR021770 Protein of unknown function DUF3335 vm_RS03295 eceb0012cc6d87ee0ddfebf44e1883f1 363 Pfam PF13673 Acetyltransferase (GNAT) domain 20 126 1.5E-17 T 11-11-2016 IPR000182 GNAT domain GO:0008080 vm_RS03295 eceb0012cc6d87ee0ddfebf44e1883f1 363 SUPERFAMILY SSF55729 1 149 7.09E-33 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS03295 eceb0012cc6d87ee0ddfebf44e1883f1 363 Gene3D G3DSA:3.40.630.30 1 145 1.9E-32 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS06665 d2f8336398c307f847043945f1cb675a 450 SUPERFAMILY SSF161093 275 446 4.18E-48 T 11-11-2016 vm_RS06665 d2f8336398c307f847043945f1cb675a 450 SUPERFAMILY SSF54631 133 270 1.01E-19 T 11-11-2016 vm_RS06665 d2f8336398c307f847043945f1cb675a 450 Gene3D G3DSA:1.10.357.20 274 446 2.9E-58 T 11-11-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 vm_RS06665 d2f8336398c307f847043945f1cb675a 450 Gene3D G3DSA:3.10.580.10 132 258 4.7E-12 T 11-11-2016 vm_RS06665 d2f8336398c307f847043945f1cb675a 450 Gene3D G3DSA:1.25.60.10 24 115 8.8E-5 T 11-11-2016 vm_RS06665 d2f8336398c307f847043945f1cb675a 450 Pfam PF00571 CBS domain 199 246 0.0017 T 11-11-2016 IPR000644 CBS domain vm_RS06665 d2f8336398c307f847043945f1cb675a 450 SMART SM00116 204 251 3.5E-4 T 11-11-2016 IPR000644 CBS domain vm_RS06665 d2f8336398c307f847043945f1cb675a 450 TIGRFAM TIGR00400 mgtE: magnesium transporter 18 446 2.1E-73 T 11-11-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 vm_RS06665 d2f8336398c307f847043945f1cb675a 450 Pfam PF01769 Divalent cation transporter 318 439 8.8E-25 T 11-11-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 vm_RS06665 d2f8336398c307f847043945f1cb675a 450 SUPERFAMILY SSF158791 21 129 1.22E-6 T 11-11-2016 vm_RS02515 87556df48484f2183d67c87dc391755b 516 SUPERFAMILY SSF110921 393 498 2.09E-20 T 11-11-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 vm_RS02515 87556df48484f2183d67c87dc391755b 516 Pfam PF00682 HMGL-like 4 273 1.4E-101 T 11-11-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 vm_RS02515 87556df48484f2183d67c87dc391755b 516 Pfam PF08502 LeuA allosteric (dimerisation) domain 369 498 2.6E-30 T 11-11-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 vm_RS02515 87556df48484f2183d67c87dc391755b 516 SMART SM00917 369 499 4.1E-28 T 11-11-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 vm_RS02515 87556df48484f2183d67c87dc391755b 516 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 199 212 - T 11-11-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 vm_RS02515 87556df48484f2183d67c87dc391755b 516 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 12 28 - T 11-11-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 vm_RS02515 87556df48484f2183d67c87dc391755b 516 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 2 508 42.341 T 11-11-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 vm_RS02515 87556df48484f2183d67c87dc391755b 516 SUPERFAMILY SSF51569 1 291 1.15E-100 T 11-11-2016 vm_RS02515 87556df48484f2183d67c87dc391755b 516 Gene3D G3DSA:3.20.20.70 1 347 3.6E-146 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS02515 87556df48484f2183d67c87dc391755b 516 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 4 496 3.6E-237 T 11-11-2016 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 vm_RS09955 b7b1a29584ac012a626e91bee6b305fd 324 SUPERFAMILY SSF55073 157 318 2.75E-40 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS09955 b7b1a29584ac012a626e91bee6b305fd 324 Gene3D G3DSA:3.30.450.20 15 132 2.0E-4 T 11-11-2016 vm_RS09955 b7b1a29584ac012a626e91bee6b305fd 324 Pfam PF00990 Diguanylate cyclase, GGDEF domain 153 312 9.4E-41 T 11-11-2016 IPR000160 GGDEF domain vm_RS09955 b7b1a29584ac012a626e91bee6b305fd 324 Gene3D G3DSA:3.30.70.270 154 319 2.9E-43 T 11-11-2016 vm_RS09955 b7b1a29584ac012a626e91bee6b305fd 324 SMART SM00267 141 317 4.1E-52 T 11-11-2016 IPR000160 GGDEF domain vm_RS09955 b7b1a29584ac012a626e91bee6b305fd 324 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 148 316 7.4E-42 T 11-11-2016 IPR000160 GGDEF domain vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 228 243 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 SUPERFAMILY SSF46689 448 494 1.43E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 SUPERFAMILY SSF46689 355 398 1.43E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 Pfam PF00072 Response regulator receiver domain 5 114 1.2E-22 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 355 364 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 SMART SM00382 162 304 9.5E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 Pfam PF00158 Sigma-54 interaction domain 143 309 6.0E-69 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 SUPERFAMILY SSF52172 4 186 2.42E-36 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 SUPERFAMILY SSF52540 142 385 1.85E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 Gene3D G3DSA:3.40.50.300 138 314 1.5E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 Gene3D G3DSA:1.10.10.60 456 494 2.2E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 Gene3D G3DSA:1.10.8.60 315 392 2.2E-26 T 11-11-2016 vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 SMART SM00448 3 114 1.2E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 Gene3D G3DSA:3.40.50.2300 2 137 2.1E-29 T 11-11-2016 vm_RS05440 92ef3d24cd560e92bbedb9650a68a7e2 506 Pfam PF02954 Bacterial regulatory protein, Fis family 458 494 4.1E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS04165 0f75d86214e36899d1e1faa6fc3c8ab4 466 SUPERFAMILY SSF56349 233 445 6.18E-21 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS04165 0f75d86214e36899d1e1faa6fc3c8ab4 466 SUPERFAMILY SSF56349 161 196 6.18E-21 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS04165 0f75d86214e36899d1e1faa6fc3c8ab4 466 Pfam PF00589 Phage integrase family 266 443 6.4E-12 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS04165 0f75d86214e36899d1e1faa6fc3c8ab4 466 Gene3D G3DSA:1.10.443.10 266 446 2.0E-22 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS04145 09cb416b7a1e8392061616f6e6e072bd 154 SUPERFAMILY SSF52833 3 153 3.34E-47 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS04145 09cb416b7a1e8392061616f6e6e072bd 154 Pfam PF00578 AhpC/TSA family 5 131 1.7E-35 T 11-11-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 vm_RS04145 09cb416b7a1e8392061616f6e6e072bd 154 Gene3D G3DSA:3.40.30.10 2 152 1.0E-47 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS04145 09cb416b7a1e8392061616f6e6e072bd 154 PIRSF PIRSF000239 1 146 6.0E-18 T 11-11-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 vm_RS00025 2e6beaee0b0fb3346d668f7cbb38975d 140 SUPERFAMILY SSF54534 49 122 1.44E-6 T 11-11-2016 vm_RS00025 2e6beaee0b0fb3346d668f7cbb38975d 140 Gene3D G3DSA:3.10.50.30 47 123 1.7E-7 T 11-11-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 vm_RS10375 c1ca1b48e549230af274767c7c02029d 634 Pfam PF03717 Penicillin-binding Protein dimerisation domain 65 240 2.7E-50 T 11-11-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 vm_RS10375 c1ca1b48e549230af274767c7c02029d 634 SUPERFAMILY SSF56519 57 253 5.76E-57 T 11-11-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 vm_RS10375 c1ca1b48e549230af274767c7c02029d 634 Gene3D G3DSA:3.90.1310.10 132 253 8.5E-40 T 11-11-2016 vm_RS10375 c1ca1b48e549230af274767c7c02029d 634 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 21 619 1.1E-238 T 11-11-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 vm_RS10375 c1ca1b48e549230af274767c7c02029d 634 SUPERFAMILY SSF56601 255 619 5.25E-95 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS10375 c1ca1b48e549230af274767c7c02029d 634 Pfam PF00905 Penicillin binding protein transpeptidase domain 272 616 1.0E-73 T 11-11-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 vm_RS10375 c1ca1b48e549230af274767c7c02029d 634 Gene3D G3DSA:3.40.710.10 255 624 9.4E-104 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS08995 32046fd40b255eba93bc226991ada46f 396 PIRSF PIRSF001413 1 395 1.4E-166 T 11-11-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 vm_RS08995 32046fd40b255eba93bc226991ada46f 396 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 79 93 - T 11-11-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 vm_RS08995 32046fd40b255eba93bc226991ada46f 396 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 1 390 49.457 T 11-11-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 vm_RS08995 32046fd40b255eba93bc226991ada46f 396 SUPERFAMILY SSF53686 5 388 5.37E-140 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS08995 32046fd40b255eba93bc226991ada46f 396 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 51 375 4.3E-49 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS08995 32046fd40b255eba93bc226991ada46f 396 Gene3D G3DSA:3.40.50.1100 96 175 4.8E-22 T 11-11-2016 vm_RS08995 32046fd40b255eba93bc226991ada46f 396 Gene3D G3DSA:3.40.50.1100 176 392 4.6E-94 T 11-11-2016 vm_RS08995 32046fd40b255eba93bc226991ada46f 396 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 6 389 4.4E-196 T 11-11-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 vm_RS04400 f17eaef06c7fcf8b622ed09fbbcaf27a 403 SMART SM00825 Beta-ketoacyl synthase 4 403 2.9E-15 T 11-11-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain vm_RS04400 f17eaef06c7fcf8b622ed09fbbcaf27a 403 Gene3D G3DSA:3.40.47.10 6 257 4.3E-63 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS04400 f17eaef06c7fcf8b622ed09fbbcaf27a 403 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 11-11-2016 IPR018201 Beta-ketoacyl synthase, active site vm_RS04400 f17eaef06c7fcf8b622ed09fbbcaf27a 403 Gene3D G3DSA:3.40.47.10 261 402 3.7E-50 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS04400 f17eaef06c7fcf8b622ed09fbbcaf27a 403 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 4.4E-46 T 11-11-2016 IPR014030 Beta-ketoacyl synthase, N-terminal vm_RS04400 f17eaef06c7fcf8b622ed09fbbcaf27a 403 SUPERFAMILY SSF53901 213 401 7.82E-62 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS04400 f17eaef06c7fcf8b622ed09fbbcaf27a 403 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 358 3.3E-28 T 11-11-2016 IPR014031 Beta-ketoacyl synthase, C-terminal vm_RS04400 f17eaef06c7fcf8b622ed09fbbcaf27a 403 SUPERFAMILY SSF53901 1 251 1.12E-66 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS00605 ee41274da699bb874ad5c6274de5b9da 830 Pfam PF08495 FIST N domain 30 215 4.1E-22 T 11-11-2016 IPR013702 FIST domain, N-terminal vm_RS00605 ee41274da699bb874ad5c6274de5b9da 830 Gene3D G3DSA:3.30.70.270 420 577 7.1E-12 T 11-11-2016 vm_RS00605 ee41274da699bb874ad5c6274de5b9da 830 Pfam PF00990 Diguanylate cyclase, GGDEF domain 420 482 7.6E-9 T 11-11-2016 IPR000160 GGDEF domain vm_RS00605 ee41274da699bb874ad5c6274de5b9da 830 SMART SM00052 593 830 2.9E-41 T 11-11-2016 IPR001633 EAL domain vm_RS00605 ee41274da699bb874ad5c6274de5b9da 830 Pfam PF10442 FIST C domain 241 343 1.6E-6 T 11-11-2016 IPR019494 FIST, C-domain vm_RS00605 ee41274da699bb874ad5c6274de5b9da 830 SMART SM00897 27 216 3.5E-29 T 11-11-2016 IPR013702 FIST domain, N-terminal vm_RS00605 ee41274da699bb874ad5c6274de5b9da 830 Gene3D G3DSA:3.20.20.450 597 827 9.5E-56 T 11-11-2016 IPR001633 EAL domain vm_RS00605 ee41274da699bb874ad5c6274de5b9da 830 SMART SM00267 407 580 5.6E-4 T 11-11-2016 IPR000160 GGDEF domain vm_RS00605 ee41274da699bb874ad5c6274de5b9da 830 SUPERFAMILY SSF55073 424 577 5.96E-12 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS00605 ee41274da699bb874ad5c6274de5b9da 830 Pfam PF00563 EAL domain 600 826 2.1E-58 T 11-11-2016 IPR001633 EAL domain vm_RS00605 ee41274da699bb874ad5c6274de5b9da 830 SUPERFAMILY SSF141868 600 827 1.22E-55 T 11-11-2016 IPR001633 EAL domain vm_RS00605 ee41274da699bb874ad5c6274de5b9da 830 SMART SM01204 217 345 2.2E-10 T 11-11-2016 IPR019494 FIST, C-domain vm_RS08685 1a298179a6946b7b795c362b8a810fd5 457 SUPERFAMILY SSF118215 29 441 4.18E-92 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS08685 1a298179a6946b7b795c362b8a810fd5 457 Pfam PF00375 Sodium:dicarboxylate symporter family 30 441 8.6E-99 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS08685 1a298179a6946b7b795c362b8a810fd5 457 Gene3D G3DSA:1.10.3860.10 24 447 1.1E-94 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS08685 1a298179a6946b7b795c362b8a810fd5 457 PRINTS PR00173 Glutamate-aspartate symporter signature 75 95 1.0E-28 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS08685 1a298179a6946b7b795c362b8a810fd5 457 PRINTS PR00173 Glutamate-aspartate symporter signature 27 47 1.0E-28 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS08685 1a298179a6946b7b795c362b8a810fd5 457 PRINTS PR00173 Glutamate-aspartate symporter signature 259 278 1.0E-28 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS08685 1a298179a6946b7b795c362b8a810fd5 457 PRINTS PR00173 Glutamate-aspartate symporter signature 396 416 1.0E-28 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS08685 1a298179a6946b7b795c362b8a810fd5 457 PRINTS PR00173 Glutamate-aspartate symporter signature 105 130 1.0E-28 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS08685 1a298179a6946b7b795c362b8a810fd5 457 PRINTS PR00173 Glutamate-aspartate symporter signature 181 203 1.0E-28 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS08685 1a298179a6946b7b795c362b8a810fd5 457 PRINTS PR00173 Glutamate-aspartate symporter signature 369 388 1.0E-28 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS07835 1a359e4c276fb4fc69124ce165512b33 430 Pfam PF01266 FAD dependent oxidoreductase 20 412 4.2E-62 T 11-11-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 vm_RS07835 1a359e4c276fb4fc69124ce165512b33 430 Gene3D G3DSA:3.50.50.60 373 429 4.2E-60 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS07835 1a359e4c276fb4fc69124ce165512b33 430 Gene3D G3DSA:3.50.50.60 152 230 4.2E-60 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS07835 1a359e4c276fb4fc69124ce165512b33 430 Gene3D G3DSA:3.50.50.60 12 94 4.2E-60 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS07835 1a359e4c276fb4fc69124ce165512b33 430 Gene3D G3DSA:3.30.9.10 98 151 2.0E-21 T 11-11-2016 vm_RS07835 1a359e4c276fb4fc69124ce165512b33 430 Gene3D G3DSA:3.30.9.10 231 372 2.0E-21 T 11-11-2016 vm_RS07835 1a359e4c276fb4fc69124ce165512b33 430 SUPERFAMILY SSF51905 19 231 1.1E-55 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS07835 1a359e4c276fb4fc69124ce165512b33 430 SUPERFAMILY SSF51905 373 430 1.1E-55 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Pfam PF00562 RNA polymerase Rpb2, domain 6 717 1263 2.7E-157 T 11-11-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1341 12.294 T 11-11-2016 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1063 1075 - T 11-11-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Gene3D G3DSA:2.30.150.10 592 656 1.6E-28 T 11-11-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Gene3D G3DSA:2.40.270.10 1060 1241 2.3E-86 T 11-11-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Gene3D G3DSA:2.40.270.10 793 820 2.3E-86 T 11-11-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Gene3D G3DSA:3.90.1100.10 445 591 3.5E-146 T 11-11-2016 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Gene3D G3DSA:3.90.1100.10 659 713 3.5E-146 T 11-11-2016 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Gene3D G3DSA:3.90.1100.10 20 151 3.5E-146 T 11-11-2016 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Pfam PF04560 RNA polymerase Rpb2, domain 7 1265 1339 3.7E-27 T 11-11-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1338 0.0 T 11-11-2016 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Pfam PF04565 RNA polymerase Rpb2, domain 3 513 580 1.1E-28 T 11-11-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Gene3D G3DSA:3.90.1110.10 346 444 4.6E-65 T 11-11-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Gene3D G3DSA:3.90.1110.10 153 230 4.6E-65 T 11-11-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Pfam PF10385 RNA polymerase beta subunit external 1 domain 591 656 3.9E-24 T 11-11-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Pfam PF04563 RNA polymerase beta subunit 26 500 8.3E-58 T 11-11-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Gene3D G3DSA:2.40.50.100 715 792 8.0E-30 T 11-11-2016 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 SUPERFAMILY SSF64484 343 939 0.0 T 11-11-2016 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 SUPERFAMILY SSF64484 11 226 0.0 T 11-11-2016 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 SUPERFAMILY SSF64484 1039 1340 0.0 T 11-11-2016 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Pfam PF04561 RNA polymerase Rpb2, domain 2 336 454 1.5E-17 T 11-11-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Pfam PF04561 RNA polymerase Rpb2, domain 2 151 235 1.0E-7 T 11-11-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Gene3D G3DSA:2.40.50.150 1045 1059 1.0E-57 T 11-11-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS13970 331285f7096b83e6eda6db94c0e49854 1341 Gene3D G3DSA:2.40.50.150 828 937 1.0E-57 T 11-11-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS16650 41900e96d5f7a3c929bfd115ed5f998e 344 SUPERFAMILY SSF48592 301 343 6.8E-11 T 11-11-2016 vm_RS16650 41900e96d5f7a3c929bfd115ed5f998e 344 SUPERFAMILY SSF48592 2 29 6.8E-11 T 11-11-2016 vm_RS16650 41900e96d5f7a3c929bfd115ed5f998e 344 Pfam PF00118 TCP-1/cpn60 chaperonin family 2 343 9.1E-45 T 11-11-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 vm_RS16650 41900e96d5f7a3c929bfd115ed5f998e 344 ProSitePatterns PS00296 Chaperonins cpn60 signature. 300 311 - T 11-11-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020 vm_RS16650 41900e96d5f7a3c929bfd115ed5f998e 344 Gene3D G3DSA:3.50.7.10 84 263 1.6E-99 T 11-11-2016 IPR027409 GroEL-like apical domain vm_RS16650 41900e96d5f7a3c929bfd115ed5f998e 344 Gene3D G3DSA:1.10.560.10 2 83 7.8E-8 T 11-11-2016 IPR027413 GroEL-like equatorial domain vm_RS16650 41900e96d5f7a3c929bfd115ed5f998e 344 SUPERFAMILY SSF52029 79 271 7.33E-84 T 11-11-2016 IPR027409 GroEL-like apical domain vm_RS16650 41900e96d5f7a3c929bfd115ed5f998e 344 SUPERFAMILY SSF54849 34 98 2.2E-23 T 11-11-2016 vm_RS16650 41900e96d5f7a3c929bfd115ed5f998e 344 Gene3D G3DSA:1.10.560.10 264 343 4.7E-10 T 11-11-2016 IPR027413 GroEL-like equatorial domain vm_RS13205 bda5a0cc22b2c8164c8342167e681bf6 160 Pfam PF00186 Dihydrofolate reductase 2 159 9.9E-63 T 11-11-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 vm_RS13205 bda5a0cc22b2c8164c8342167e681bf6 160 PRINTS PR00070 Dihydrofolate reductase signature 92 106 7.7E-14 T 11-11-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 vm_RS13205 bda5a0cc22b2c8164c8342167e681bf6 160 PRINTS PR00070 Dihydrofolate reductase signature 14 24 7.7E-14 T 11-11-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 vm_RS13205 bda5a0cc22b2c8164c8342167e681bf6 160 PRINTS PR00070 Dihydrofolate reductase signature 41 52 7.7E-14 T 11-11-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 vm_RS13205 bda5a0cc22b2c8164c8342167e681bf6 160 PRINTS PR00070 Dihydrofolate reductase signature 28 36 7.7E-14 T 11-11-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 vm_RS13205 bda5a0cc22b2c8164c8342167e681bf6 160 Gene3D G3DSA:3.40.430.10 1 160 1.1E-61 T 11-11-2016 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 vm_RS13205 bda5a0cc22b2c8164c8342167e681bf6 160 SUPERFAMILY SSF53597 1 160 1.57E-58 T 11-11-2016 IPR024072 Dihydrofolate reductase-like domain Reactome: R-HSA-196757 vm_RS13205 bda5a0cc22b2c8164c8342167e681bf6 160 PIRSF PIRSF000194 1 160 9.2E-65 T 11-11-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|Reactome: R-HSA-196757 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 Gene3D G3DSA:1.10.3850.10 800 1010 9.9E-57 T 11-11-2016 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 SUPERFAMILY SSF82714 708 788 1.96E-9 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 Gene3D G3DSA:3.30.70.1430 558 626 9.9E-5 T 11-11-2016 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 SUPERFAMILY SSF82714 187 269 3.01E-12 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 Gene3D G3DSA:1.20.1640.10 290 499 2.1E-40 T 11-11-2016 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 SUPERFAMILY SSF82693 138 184 6.8E-19 T 11-11-2016 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 SUPERFAMILY SSF82693 272 324 6.8E-19 T 11-11-2016 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 SUPERFAMILY SSF82693 557 650 1.1E-5 T 11-11-2016 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 Gene3D G3DSA:3.30.70.1430 41 144 1.4E-24 T 11-11-2016 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 SUPERFAMILY SSF82866 793 1012 3.4E-44 T 11-11-2016 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 Gene3D G3DSA:3.30.2090.10 714 788 5.6E-8 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 Gene3D G3DSA:3.30.2090.10 186 269 2.5E-11 T 11-11-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.5E-24 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 3.5E-24 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 3.5E-24 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 PRINTS PR00702 Acriflavin resistance protein family signature 468 491 3.5E-24 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.5E-24 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 3.5E-24 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 SUPERFAMILY SSF82693 41 137 9.81E-18 T 11-11-2016 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 SUPERFAMILY SSF82866 295 495 5.1E-31 T 11-11-2016 vm_RS06225 98fc49a814fb409a5854130e083d81fb 1016 Pfam PF00873 AcrB/AcrD/AcrF family 4 1008 3.1E-160 T 11-11-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 vm_RS02230 d9876decb0c89c0ba68c58af84a0faba 209 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 5 202 35.309 T 11-11-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 vm_RS02230 d9876decb0c89c0ba68c58af84a0faba 209 Gene3D G3DSA:3.40.50.1950 6 205 3.1E-76 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 vm_RS02230 d9876decb0c89c0ba68c58af84a0faba 209 Pfam PF02441 Flavoprotein 6 143 4.1E-23 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 vm_RS02230 d9876decb0c89c0ba68c58af84a0faba 209 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 7 200 1.3E-57 T 11-11-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 vm_RS02230 d9876decb0c89c0ba68c58af84a0faba 209 SUPERFAMILY SSF52507 5 201 1.31E-57 T 11-11-2016 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 vm_RS05720 5ec3f10935a8667fb4d465e7712fe224 221 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 30 204 1.0E-8 T 11-11-2016 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 vm_RS12275 45d450c8b3b2ce185d2486f88d86e7b7 196 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 33.769 T 11-11-2016 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 vm_RS12275 45d450c8b3b2ce185d2486f88d86e7b7 196 Pfam PF13580 SIS domain 9 144 1.3E-34 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 vm_RS12275 45d450c8b3b2ce185d2486f88d86e7b7 196 SUPERFAMILY SSF53697 1 191 2.83E-56 T 11-11-2016 vm_RS12275 45d450c8b3b2ce185d2486f88d86e7b7 196 Gene3D G3DSA:3.40.50.10490 2 191 5.5E-58 T 11-11-2016 vm_RS08315 0bd19c33bd9dc1208e9256fb20c5aa64 204 Pfam PF00293 NUDIX domain 43 149 2.7E-15 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 vm_RS08315 0bd19c33bd9dc1208e9256fb20c5aa64 204 SUPERFAMILY SSF55811 14 190 4.74E-35 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS08315 0bd19c33bd9dc1208e9256fb20c5aa64 204 Gene3D G3DSA:3.90.79.10 32 194 2.1E-39 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 422 566 8.9E-20 T 11-11-2016 IPR000160 GGDEF domain vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 Pfam PF00672 HAMP domain 344 412 1.0E-7 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 Pfam PF02743 Cache domain 44 323 1.0E-13 T 11-11-2016 IPR033479 Double Cache domain 1 vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 SUPERFAMILY SSF55073 427 567 6.75E-27 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 SUPERFAMILY SSF158472 364 413 4.18E-5 T 11-11-2016 vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 Gene3D G3DSA:3.30.450.20 104 218 7.3E-13 T 11-11-2016 vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 SMART SM00267 411 574 4.5E-30 T 11-11-2016 IPR000160 GGDEF domain vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 SUPERFAMILY SSF141868 591 838 1.03E-83 T 11-11-2016 IPR001633 EAL domain vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 Gene3D G3DSA:3.30.70.270 424 580 2.0E-30 T 11-11-2016 vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 SMART SM00052 584 832 5.2E-110 T 11-11-2016 IPR001633 EAL domain vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 Gene3D G3DSA:3.20.20.450 587 833 2.1E-89 T 11-11-2016 IPR001633 EAL domain vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 Pfam PF00990 Diguanylate cyclase, GGDEF domain 424 567 3.2E-26 T 11-11-2016 IPR000160 GGDEF domain vm_RS00805 5eee993cf0e0bf897abcf6a32b90e14f 841 Pfam PF00563 EAL domain 591 827 2.4E-73 T 11-11-2016 IPR001633 EAL domain vm_RS01950 987e2811ffae0c9aeeddf6e4e23fbe37 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 8.0E-35 T 11-11-2016 IPR027486 Ribosomal protein S10 domain vm_RS01950 987e2811ffae0c9aeeddf6e4e23fbe37 103 SMART SM01403 7 101 8.0E-56 T 11-11-2016 IPR027486 Ribosomal protein S10 domain vm_RS01950 987e2811ffae0c9aeeddf6e4e23fbe37 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 26.898 T 11-11-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01950 987e2811ffae0c9aeeddf6e4e23fbe37 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 3.3E-18 T 11-11-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01950 987e2811ffae0c9aeeddf6e4e23fbe37 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 3.3E-18 T 11-11-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01950 987e2811ffae0c9aeeddf6e4e23fbe37 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 3.3E-18 T 11-11-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01950 987e2811ffae0c9aeeddf6e4e23fbe37 103 Gene3D G3DSA:3.30.70.600 3 102 2.7E-43 T 11-11-2016 IPR027486 Ribosomal protein S10 domain vm_RS01950 987e2811ffae0c9aeeddf6e4e23fbe37 103 SUPERFAMILY SSF54999 5 101 1.7E-36 T 11-11-2016 IPR027486 Ribosomal protein S10 domain vm_RS01950 987e2811ffae0c9aeeddf6e4e23fbe37 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 1.1E-45 T 11-11-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01950 987e2811ffae0c9aeeddf6e4e23fbe37 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 11-11-2016 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS07650 c5debf2e3aaa65ab7c7e4c6e19d10870 502 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 11-11-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 vm_RS07650 c5debf2e3aaa65ab7c7e4c6e19d10870 502 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 11-11-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 vm_RS07650 c5debf2e3aaa65ab7c7e4c6e19d10870 502 SUPERFAMILY SSF53720 14 493 3.53E-164 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 vm_RS07650 c5debf2e3aaa65ab7c7e4c6e19d10870 502 Gene3D G3DSA:3.40.605.10 17 292 1.2E-101 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 vm_RS07650 c5debf2e3aaa65ab7c7e4c6e19d10870 502 Pfam PF00171 Aldehyde dehydrogenase family 27 489 4.3E-166 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 vm_RS07650 c5debf2e3aaa65ab7c7e4c6e19d10870 502 Gene3D G3DSA:3.40.309.10 293 466 1.3E-58 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 vm_RS12990 270d876362e499532fde3792e4fee462 665 Gene3D G3DSA:3.40.50.920 539 664 7.4E-51 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 vm_RS12990 270d876362e499532fde3792e4fee462 665 Gene3D G3DSA:3.40.50.970 4 319 1.2E-134 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS12990 270d876362e499532fde3792e4fee462 665 SUPERFAMILY SSF52518 5 331 1.92E-120 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS12990 270d876362e499532fde3792e4fee462 665 Pfam PF02779 Transketolase, pyrimidine binding domain 355 525 3.9E-47 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain vm_RS12990 270d876362e499532fde3792e4fee462 665 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 11-11-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 vm_RS12990 270d876362e499532fde3792e4fee462 665 SMART SM00861 355 526 6.9E-66 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain vm_RS12990 270d876362e499532fde3792e4fee462 665 TIGRFAM TIGR00232 tktlase_bact: transketolase 5 664 0.0 T 11-11-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 vm_RS12990 270d876362e499532fde3792e4fee462 665 SUPERFAMILY SSF52922 534 665 1.06E-43 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 vm_RS12990 270d876362e499532fde3792e4fee462 665 SUPERFAMILY SSF52518 347 528 6.26E-67 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS12990 270d876362e499532fde3792e4fee462 665 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 4 334 4.9E-169 T 11-11-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 vm_RS12990 270d876362e499532fde3792e4fee462 665 ProSitePatterns PS00802 Transketolase signature 2. 468 484 - T 11-11-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 vm_RS12990 270d876362e499532fde3792e4fee462 665 Pfam PF02780 Transketolase, C-terminal domain 542 656 1.1E-18 T 11-11-2016 IPR033248 Transketolase, C-terminal domain vm_RS12990 270d876362e499532fde3792e4fee462 665 Gene3D G3DSA:3.40.50.970 327 534 2.9E-80 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS10115 319c76a4359d7bf07e58de9536d31c53 224 Pfam PF00929 Exonuclease 20 195 7.1E-42 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS10115 319c76a4359d7bf07e58de9536d31c53 224 TIGRFAM TIGR01298 RNaseT: ribonuclease T 10 209 7.8E-99 T 11-11-2016 IPR005987 Ribonuclease T GO:0004540|GO:0006396 vm_RS10115 319c76a4359d7bf07e58de9536d31c53 224 Gene3D G3DSA:3.30.420.10 10 210 2.2E-58 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS10115 319c76a4359d7bf07e58de9536d31c53 224 Hamap MF_00157 Ribonuclease T [rnt]. 1 224 118.308 T 11-11-2016 IPR005987 Ribonuclease T GO:0004540|GO:0006396 vm_RS10115 319c76a4359d7bf07e58de9536d31c53 224 SMART SM00479 18 204 4.7E-32 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS10115 319c76a4359d7bf07e58de9536d31c53 224 SUPERFAMILY SSF53098 10 208 1.95E-55 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS10060 a638d2d979e633bf46e9c5857d2b1956 193 PIRSF PIRSF006102 1 193 2.2E-64 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 vm_RS10060 a638d2d979e633bf46e9c5857d2b1956 193 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 3 191 2.9E-90 T 11-11-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 vm_RS10060 a638d2d979e633bf46e9c5857d2b1956 193 Hamap MF_00459 Electron transport complex subunit RsxA [rsxA]. 2 191 26.321 T 11-11-2016 IPR011293 Electron transport complex, subunit RnfA/RsxA GO:0022900 vm_RS10060 a638d2d979e633bf46e9c5857d2b1956 193 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 190 8.5E-62 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 vm_RS02980 59ac57cb243330ff02d9fa72d1141b06 486 SUPERFAMILY SSF51984 23 109 2.22E-28 T 11-11-2016 vm_RS02980 59ac57cb243330ff02d9fa72d1141b06 486 SUPERFAMILY SSF53623 108 323 1.19E-72 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02980 59ac57cb243330ff02d9fa72d1141b06 486 Gene3D G3DSA:3.40.50.720 24 110 2.2E-38 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS02980 59ac57cb243330ff02d9fa72d1141b06 486 Gene3D G3DSA:3.40.1190.10 111 328 9.3E-84 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02980 59ac57cb243330ff02d9fa72d1141b06 486 Pfam PF08245 Mur ligase middle domain 127 307 1.3E-29 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02980 59ac57cb243330ff02d9fa72d1141b06 486 SUPERFAMILY SSF53244 326 474 6.96E-48 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02980 59ac57cb243330ff02d9fa72d1141b06 486 Gene3D G3DSA:3.90.190.20 329 475 3.4E-57 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02980 59ac57cb243330ff02d9fa72d1141b06 486 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 22 479 43.622 T 11-11-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS02980 59ac57cb243330ff02d9fa72d1141b06 486 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 25 473 9.3E-192 T 11-11-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS02980 59ac57cb243330ff02d9fa72d1141b06 486 Pfam PF02875 Mur ligase family, glutamate ligase domain 329 417 1.2E-21 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02980 59ac57cb243330ff02d9fa72d1141b06 486 Pfam PF01225 Mur ligase family, catalytic domain 25 121 2.9E-29 T 11-11-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 vm_RS05615 71ba75b77189c8753855f722a5a4e29f 178 SUPERFAMILY SSF55729 2 177 2.3E-45 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS05615 71ba75b77189c8753855f722a5a4e29f 178 Pfam PF13302 Acetyltransferase (GNAT) domain 11 152 1.9E-25 T 11-11-2016 IPR000182 GNAT domain GO:0008080 vm_RS05615 71ba75b77189c8753855f722a5a4e29f 178 Gene3D G3DSA:3.40.630.30 2 177 1.2E-46 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 SMART SM00448 445 556 1.7E-33 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 SMART SM00388 200 265 2.3E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 Gene3D G3DSA:1.10.287.130 192 261 7.1E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 Gene3D G3DSA:3.40.50.2300 443 563 2.9E-39 T 11-11-2016 vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 Gene3D G3DSA:3.30.565.10 269 427 8.8E-43 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 SUPERFAMILY SSF52172 443 561 2.28E-36 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 312 422 1.6E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 SMART SM00387 312 423 5.6E-35 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 SUPERFAMILY SSF47384 190 265 2.16E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 Pfam PF00072 Response regulator receiver domain 447 556 2.4E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 SUPERFAMILY SSF55874 254 425 1.57E-42 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 PRINTS PR00344 Bacterial sensor protein C-terminal signature 348 362 5.0E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 PRINTS PR00344 Bacterial sensor protein C-terminal signature 383 401 5.0E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 PRINTS PR00344 Bacterial sensor protein C-terminal signature 407 420 5.0E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 376 5.0E-15 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05375 ac3804c744749090a5046f219dedf3b5 571 Pfam PF00512 His Kinase A (phospho-acceptor) domain 202 265 1.8E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS13090 91a45a9acfdc8ae9e74740e78efd28b9 208 SMART SM00478 52 202 5.0E-4 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 vm_RS13090 91a45a9acfdc8ae9e74740e78efd28b9 208 SUPERFAMILY SSF48150 42 201 1.22E-25 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 vm_RS13090 91a45a9acfdc8ae9e74740e78efd28b9 208 Gene3D G3DSA:1.10.1670.10 154 202 1.3E-5 T 11-11-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 vm_RS13090 91a45a9acfdc8ae9e74740e78efd28b9 208 Gene3D G3DSA:1.10.340.30 47 151 7.9E-20 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 vm_RS01580 d92393b3886c0d1c80f6e6f5b1d5c203 183 Gene3D G3DSA:3.30.70.1070 102 179 9.4E-26 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 vm_RS01580 d92393b3886c0d1c80f6e6f5b1d5c203 183 Pfam PF05036 Sporulation related domain 109 178 1.7E-13 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 vm_RS01580 d92393b3886c0d1c80f6e6f5b1d5c203 183 SUPERFAMILY SSF110997 108 179 1.57E-16 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 vm_RS07890 bb26f3baa54482002c3da143771f4ce5 468 SUPERFAMILY SSF51556 85 383 2.69E-82 T 11-11-2016 IPR032466 Metal-dependent hydrolase vm_RS07890 bb26f3baa54482002c3da143771f4ce5 468 Pfam PF01979 Amidohydrolase family 82 431 1.0E-68 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 vm_RS07890 bb26f3baa54482002c3da143771f4ce5 468 Gene3D G3DSA:3.20.20.140 88 391 1.6E-88 T 11-11-2016 vm_RS07890 bb26f3baa54482002c3da143771f4ce5 468 SUPERFAMILY SSF51338 382 454 7.97E-34 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS07890 bb26f3baa54482002c3da143771f4ce5 468 SUPERFAMILY SSF51338 28 85 7.97E-34 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS07890 bb26f3baa54482002c3da143771f4ce5 468 Gene3D G3DSA:2.30.40.10 392 434 1.6E-19 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS07890 bb26f3baa54482002c3da143771f4ce5 468 Gene3D G3DSA:2.30.40.10 25 87 1.6E-19 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS01650 c860603f2e7ae55b93c480140b3b6c00 340 Gene3D G3DSA:3.20.20.70 106 314 3.0E-15 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS01650 c860603f2e7ae55b93c480140b3b6c00 340 TIGRFAM TIGR03821 EFP_modif_epmB: EF-P beta-lysylation protein EpmB 16 335 8.7E-157 T 11-11-2016 IPR022462 Lysine-2,3-aminomutase-like vm_RS01650 c860603f2e7ae55b93c480140b3b6c00 340 SUPERFAMILY SSF102114 102 324 3.66E-26 T 11-11-2016 vm_RS01650 c860603f2e7ae55b93c480140b3b6c00 340 PIRSF PIRSF004911 5 340 7.0E-114 T 11-11-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase vm_RS01650 c860603f2e7ae55b93c480140b3b6c00 340 Pfam PF13353 4Fe-4S single cluster domain 111 183 1.5E-7 T 11-11-2016 vm_RS01650 c860603f2e7ae55b93c480140b3b6c00 340 Pfam PF04055 Radical SAM superfamily 118 286 1.0E-10 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS01650 c860603f2e7ae55b93c480140b3b6c00 340 TIGRFAM TIGR00238 TIGR00238: KamA family protein 4 328 2.0E-126 T 11-11-2016 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase vm_RS00535 dcace103209d5374927642d99cddd95b 462 Pfam PF04055 Radical SAM superfamily 62 232 3.4E-19 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS00535 dcace103209d5374927642d99cddd95b 462 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 13 462 1.9E-209 T 11-11-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22 vm_RS00535 dcace103209d5374927642d99cddd95b 462 SMART SM00729 57 277 1.6E-55 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 vm_RS00535 dcace103209d5374927642d99cddd95b 462 PIRSF PIRSF000167 8 459 7.1E-173 T 11-11-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22 vm_RS00535 dcace103209d5374927642d99cddd95b 462 Gene3D G3DSA:3.80.30.20 58 287 8.8E-32 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe vm_RS00535 dcace103209d5374927642d99cddd95b 462 SUPERFAMILY SSF102114 11 449 1.44E-145 T 11-11-2016 vm_RS00535 dcace103209d5374927642d99cddd95b 462 Pfam PF06969 HemN C-terminal domain 368 436 1.2E-9 T 11-11-2016 IPR010723 HemN, C-terminal vm_RS07970 b2e2370ff22ac5adaa3c695b686e6ed1 939 Pfam PF12531 DNA-K related protein 689 936 1.3E-101 T 11-11-2016 IPR021030 Protein of unknown function DUF3731 vm_RS07970 b2e2370ff22ac5adaa3c695b686e6ed1 939 Pfam PF00012 Hsp70 protein 57 315 1.3E-14 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS07970 b2e2370ff22ac5adaa3c695b686e6ed1 939 PRINTS PR00301 70kDa heat shock protein signature 165 185 1.5E-7 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS07970 b2e2370ff22ac5adaa3c695b686e6ed1 939 PRINTS PR00301 70kDa heat shock protein signature 232 242 1.5E-7 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS07970 b2e2370ff22ac5adaa3c695b686e6ed1 939 PRINTS PR00301 70kDa heat shock protein signature 6 19 1.5E-7 T 11-11-2016 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 vm_RS07970 b2e2370ff22ac5adaa3c695b686e6ed1 939 Gene3D G3DSA:3.30.420.40 6 227 2.1E-34 T 11-11-2016 vm_RS07970 b2e2370ff22ac5adaa3c695b686e6ed1 939 Gene3D G3DSA:3.30.420.40 228 327 6.0E-16 T 11-11-2016 vm_RS07970 b2e2370ff22ac5adaa3c695b686e6ed1 939 SUPERFAMILY SSF53067 403 457 4.43E-20 T 11-11-2016 vm_RS07970 b2e2370ff22ac5adaa3c695b686e6ed1 939 SUPERFAMILY SSF53067 223 370 4.43E-20 T 11-11-2016 vm_RS07970 b2e2370ff22ac5adaa3c695b686e6ed1 939 SUPERFAMILY SSF53067 6 210 5.34E-32 T 11-11-2016 vm_RS01855 99586ef1a08a861870fc2b1121bb6b9e 339 SUPERFAMILY SSF55729 1 337 4.82E-129 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS01855 99586ef1a08a861870fc2b1121bb6b9e 339 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 338 2.9E-132 T 11-11-2016 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 vm_RS01855 99586ef1a08a861870fc2b1121bb6b9e 339 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 3 338 2.6E-133 T 11-11-2016 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 vm_RS01855 99586ef1a08a861870fc2b1121bb6b9e 339 Gene3D G3DSA:2.40.40.20 284 339 1.3E-13 T 11-11-2016 vm_RS01855 99586ef1a08a861870fc2b1121bb6b9e 339 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 337 1.9E-139 T 11-11-2016 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109 vm_RS13540 d65ee50f8cb0750eecc0c487bb6225ef 177 SUPERFAMILY SSF50249 4 177 4.8E-61 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS13540 d65ee50f8cb0750eecc0c487bb6225ef 177 Pfam PF00436 Single-strand binding protein family 6 105 1.8E-43 T 11-11-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 vm_RS13540 d65ee50f8cb0750eecc0c487bb6225ef 177 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 3 177 6.8E-62 T 11-11-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 vm_RS13540 d65ee50f8cb0750eecc0c487bb6225ef 177 Hamap MF_00984 Single-stranded DNA-binding protein. 6 118 39.389 T 11-11-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 vm_RS13540 d65ee50f8cb0750eecc0c487bb6225ef 177 Gene3D G3DSA:2.40.50.140 4 177 1.0E-56 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS02605 08977b689ba30c9370db16d9a87a7094 86 Pfam PF03937 Flavinator of succinate dehydrogenase 7 77 1.6E-24 T 11-11-2016 IPR005631 Flavinator of succinate dehydrogenase vm_RS02605 08977b689ba30c9370db16d9a87a7094 86 Gene3D G3DSA:1.10.150.250 3 83 2.3E-29 T 11-11-2016 IPR005631 Flavinator of succinate dehydrogenase vm_RS02605 08977b689ba30c9370db16d9a87a7094 86 SUPERFAMILY SSF109910 3 79 2.75E-26 T 11-11-2016 IPR005631 Flavinator of succinate dehydrogenase vm_RS11810 4a2d5b5de4dc44730e11a2c43e77a415 271 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 142 154 - T 11-11-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 vm_RS11810 4a2d5b5de4dc44730e11a2c43e77a415 271 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 3 261 2.6E-93 T 11-11-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 vm_RS11810 4a2d5b5de4dc44730e11a2c43e77a415 271 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 13 257 2.3E-84 T 11-11-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 vm_RS11810 4a2d5b5de4dc44730e11a2c43e77a415 271 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 10 262 20.421 T 11-11-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 SMART SM00322 301 375 0.027 T 11-11-2016 IPR004087 K Homology domain GO:0003676 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 SMART SM00322 230 293 34.0 T 11-11-2016 IPR004087 K Homology domain GO:0003676 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 Gene3D G3DSA:3.30.300.20 199 277 2.0E-33 T 11-11-2016 IPR015946 K homology domain-like, alpha/beta vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 Gene3D G3DSA:1.10.150.20 429 493 5.7E-23 T 11-11-2016 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 Gene3D G3DSA:3.30.1480.10 1 124 2.8E-44 T 11-11-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 SUPERFAMILY SSF50249 132 199 9.43E-17 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 SMART SM00316 133 198 1.6E-6 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 Pfam PF13184 NusA-like KH domain 230 297 4.8E-27 T 11-11-2016 IPR025249 KH domain, NusA-like GO:0003723 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 SUPERFAMILY SSF47794 429 492 4.08E-16 T 11-11-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 SUPERFAMILY SSF47794 349 414 2.04E-16 T 11-11-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 Reactome: R-HSA-912446 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 424 28.832 T 11-11-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 SUPERFAMILY SSF54814 201 278 1.9E-28 T 11-11-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 4 342 1.8E-125 T 11-11-2016 IPR010213 Transcription termination factor NusA GO:0003723 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 Gene3D G3DSA:3.30.300.20 278 347 1.8E-27 T 11-11-2016 IPR015946 K homology domain-like, alpha/beta vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 440 489 1.2E-17 T 11-11-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 365 414 1.4E-21 T 11-11-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 Gene3D G3DSA:2.40.50.140 128 197 1.9E-23 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 SUPERFAMILY SSF69705 1 126 2.35E-39 T 11-11-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 Pfam PF08529 NusA N-terminal domain 4 123 2.6E-35 T 11-11-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 Gene3D G3DSA:1.10.150.20 356 414 3.5E-21 T 11-11-2016 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 Pfam PF14520 Helix-hairpin-helix domain 432 486 9.4E-8 T 11-11-2016 vm_RS11970 326fd60276fcb7d491b7d95d69610c41 495 SUPERFAMILY SSF54814 279 342 4.32E-15 T 11-11-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 vm_RS02120 adcb2dcf722fc6eb1935d665a23faff3 189 Gene3D G3DSA:2.60.120.10 7 150 4.2E-23 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS02120 adcb2dcf722fc6eb1935d665a23faff3 189 SUPERFAMILY SSF51206 15 137 1.02E-15 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like vm_RS10590 711381a922eae54f608a54921e5e7a4d 562 SUPERFAMILY SSF51011 480 558 2.34E-13 T 11-11-2016 vm_RS10590 711381a922eae54f608a54921e5e7a4d 562 SUPERFAMILY SSF51445 8 476 5.11E-162 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS10590 711381a922eae54f608a54921e5e7a4d 562 TIGRFAM TIGR02403 trehalose_treC: alpha,alpha-phosphotrehalase 10 556 6.8E-263 T 11-11-2016 IPR012769 Trehalose-6-phosphate hydrolase GO:0005737|GO:0005993|GO:0008788 KEGG: 00500+3.2.1.93 vm_RS10590 711381a922eae54f608a54921e5e7a4d 562 Gene3D G3DSA:3.20.20.80 7 109 5.9E-128 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS10590 711381a922eae54f608a54921e5e7a4d 562 Gene3D G3DSA:3.20.20.80 180 478 5.9E-128 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS10590 711381a922eae54f608a54921e5e7a4d 562 SMART SM00642 18 419 2.5E-163 T 11-11-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 vm_RS10590 711381a922eae54f608a54921e5e7a4d 562 Gene3D G3DSA:2.60.40.1180 481 558 8.0E-15 T 11-11-2016 IPR013780 Glycosyl hydrolase, all-beta vm_RS10590 711381a922eae54f608a54921e5e7a4d 562 Pfam PF00128 Alpha amylase, catalytic domain 33 375 1.2E-128 T 11-11-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 vm_RS10590 711381a922eae54f608a54921e5e7a4d 562 Gene3D G3DSA:3.90.400.10 110 179 1.4E-31 T 11-11-2016 vm_RS04535 4c5dc5caebc9c722badc1d766fc7db78 292 PRINTS PR00690 Adhesin family signature 233 251 4.5E-8 T 11-11-2016 IPR006128 Adhesion lipoprotein GO:0007155 vm_RS04535 4c5dc5caebc9c722badc1d766fc7db78 292 PRINTS PR00690 Adhesin family signature 180 201 4.5E-8 T 11-11-2016 IPR006128 Adhesion lipoprotein GO:0007155 vm_RS04535 4c5dc5caebc9c722badc1d766fc7db78 292 PRINTS PR00690 Adhesin family signature 51 64 4.5E-8 T 11-11-2016 IPR006128 Adhesion lipoprotein GO:0007155 vm_RS04535 4c5dc5caebc9c722badc1d766fc7db78 292 PRINTS PR00690 Adhesin family signature 64 81 4.5E-8 T 11-11-2016 IPR006128 Adhesion lipoprotein GO:0007155 vm_RS04535 4c5dc5caebc9c722badc1d766fc7db78 292 Gene3D G3DSA:3.40.50.1980 184 292 2.5E-27 T 11-11-2016 vm_RS04535 4c5dc5caebc9c722badc1d766fc7db78 292 SUPERFAMILY SSF53807 21 291 2.5E-71 T 11-11-2016 vm_RS04535 4c5dc5caebc9c722badc1d766fc7db78 292 PRINTS PR00691 Adhesin B signature 45 63 7.4E-9 T 11-11-2016 IPR006129 Adhesin B GO:0007155 vm_RS04535 4c5dc5caebc9c722badc1d766fc7db78 292 PRINTS PR00691 Adhesin B signature 124 143 7.4E-9 T 11-11-2016 IPR006129 Adhesin B GO:0007155 vm_RS04535 4c5dc5caebc9c722badc1d766fc7db78 292 PRINTS PR00691 Adhesin B signature 281 292 7.4E-9 T 11-11-2016 IPR006129 Adhesin B GO:0007155 vm_RS04535 4c5dc5caebc9c722badc1d766fc7db78 292 PRINTS PR00691 Adhesin B signature 64 83 7.4E-9 T 11-11-2016 IPR006129 Adhesin B GO:0007155 vm_RS04535 4c5dc5caebc9c722badc1d766fc7db78 292 Gene3D G3DSA:3.40.50.1980 15 181 7.5E-43 T 11-11-2016 vm_RS04535 4c5dc5caebc9c722badc1d766fc7db78 292 Pfam PF01297 Zinc-uptake complex component A periplasmic 23 288 2.9E-54 T 11-11-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 vm_RS00430 26bb7149f7e3a5306fe7e49e42cf86d8 448 Pfam PF01554 MatE 23 183 9.6E-26 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS00430 26bb7149f7e3a5306fe7e49e42cf86d8 448 Pfam PF01554 MatE 249 399 1.3E-14 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS00430 26bb7149f7e3a5306fe7e49e42cf86d8 448 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 417 3.1E-76 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS02390 82beaa5ff6396961b7a907213acfb8a4 458 Gene3D G3DSA:3.40.50.1010 104 155 6.2E-16 T 11-11-2016 IPR029060 PIN domain-like vm_RS02390 82beaa5ff6396961b7a907213acfb8a4 458 Gene3D G3DSA:3.40.50.1010 9 67 6.2E-16 T 11-11-2016 IPR029060 PIN domain-like vm_RS02390 82beaa5ff6396961b7a907213acfb8a4 458 Pfam PF13638 PIN domain 9 149 1.5E-34 T 11-11-2016 IPR002716 PIN domain vm_RS02390 82beaa5ff6396961b7a907213acfb8a4 458 SMART SM00670 7 141 4.9E-8 T 11-11-2016 IPR002716 PIN domain vm_RS02390 82beaa5ff6396961b7a907213acfb8a4 458 Pfam PF02562 PhoH-like protein 248 452 1.3E-53 T 11-11-2016 IPR003714 PhoH-like protein GO:0005524 vm_RS02390 82beaa5ff6396961b7a907213acfb8a4 458 SUPERFAMILY SSF52540 157 210 2.02E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02390 82beaa5ff6396961b7a907213acfb8a4 458 SUPERFAMILY SSF52540 247 437 2.02E-29 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02390 82beaa5ff6396961b7a907213acfb8a4 458 SUPERFAMILY SSF88723 104 157 6.87E-14 T 11-11-2016 IPR029060 PIN domain-like vm_RS02390 82beaa5ff6396961b7a907213acfb8a4 458 SUPERFAMILY SSF88723 7 68 6.87E-14 T 11-11-2016 IPR029060 PIN domain-like vm_RS02390 82beaa5ff6396961b7a907213acfb8a4 458 Gene3D G3DSA:3.40.50.300 246 456 3.7E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08495 77cfb5a3e84321e4bba6f12a81fadf0e 461 SUPERFAMILY SSF46626 319 461 1.2E-22 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS08495 77cfb5a3e84321e4bba6f12a81fadf0e 461 Gene3D G3DSA:1.10.760.10 324 461 1.0E-16 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS08495 77cfb5a3e84321e4bba6f12a81fadf0e 461 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 21 461 8.4E-143 T 11-11-2016 IPR010538 Di-haem oxidoreductase, putative peroxidase vm_RS08495 77cfb5a3e84321e4bba6f12a81fadf0e 461 PIRSF PIRSF028099 5 461 3.7E-184 T 11-11-2016 IPR010538 Di-haem oxidoreductase, putative peroxidase vm_RS04790 fec16547aba5a22b277df95de1ba917b 288 PRINTS PR00169 Potassium channel signature 17 45 9.3E-36 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 vm_RS04790 fec16547aba5a22b277df95de1ba917b 288 PRINTS PR00169 Potassium channel signature 58 81 9.3E-36 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 vm_RS04790 fec16547aba5a22b277df95de1ba917b 288 PRINTS PR00169 Potassium channel signature 120 146 9.3E-36 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 vm_RS04790 fec16547aba5a22b277df95de1ba917b 288 PRINTS PR00169 Potassium channel signature 84 104 9.3E-36 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 vm_RS04790 fec16547aba5a22b277df95de1ba917b 288 PRINTS PR00169 Potassium channel signature 178 200 9.3E-36 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 vm_RS04790 fec16547aba5a22b277df95de1ba917b 288 PRINTS PR00169 Potassium channel signature 149 172 9.3E-36 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 vm_RS04790 fec16547aba5a22b277df95de1ba917b 288 PRINTS PR00169 Potassium channel signature 207 233 9.3E-36 T 11-11-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 Reactome: R-HSA-1296072 vm_RS04790 fec16547aba5a22b277df95de1ba917b 288 SUPERFAMILY SSF81324 23 234 1.57E-51 T 11-11-2016 vm_RS04790 fec16547aba5a22b277df95de1ba917b 288 Gene3D G3DSA:1.10.287.70 25 233 2.3E-52 T 11-11-2016 vm_RS04790 fec16547aba5a22b277df95de1ba917b 288 Pfam PF00520 Ion transport protein 24 235 1.2E-30 T 11-11-2016 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 vm_RS02595 c56797720471193a83187775ae8c6ae9 68 Pfam PF06526 Protein of unknown function (DUF1107) 1 63 1.0E-28 T 11-11-2016 IPR009491 Protein of unknown function DUF1107 vm_RS02595 c56797720471193a83187775ae8c6ae9 68 Gene3D G3DSA:3.30.1910.10 1 65 6.7E-31 T 11-11-2016 vm_RS02595 c56797720471193a83187775ae8c6ae9 68 ProDom PD055267 YTFK Y0656 CYTOPLASMIC VP2585 VV0426 ESCHERICHIA S4534 VC2473 YPO3527 COLI 1 63 7.0E-30 T 11-11-2016 IPR009491 Protein of unknown function DUF1107 vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 5.8E-97 T 11-11-2016 IPR015929 Aconitase B, N-terminal GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 SUPERFAMILY SSF52016 163 372 1.96E-69 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 Gene3D G3DSA:3.40.1060.10 520 682 2.7E-84 T 11-11-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33 vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 853 0.0 T 11-11-2016 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 Pfam PF00330 Aconitase family (aconitate hydratase) 472 818 8.6E-42 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 SUPERFAMILY SSF53732 379 860 1.11E-146 T 11-11-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 PIRSF PIRSF036687 1 859 0.0 T 11-11-2016 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 Gene3D G3DSA:3.30.499.10 684 859 1.6E-53 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 Gene3D G3DSA:3.30.499.10 402 519 1.1E-63 T 11-11-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33 vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 Pfam PF11791 Aconitate B N-terminal domain 4 156 4.9E-66 T 11-11-2016 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 ProSitePatterns PS01244 Aconitase family signature 2. 761 774 - T 11-11-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 SUPERFAMILY SSF74778 2 160 5.89E-68 T 11-11-2016 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747 vm_RS12175 da887fe589a6e149e431eaf3fdba70ab 865 Gene3D G3DSA:3.20.19.10 162 361 7.8E-94 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel vm_RS05960 6dda1acf2d3ce2eef0bb026aa1a06fb9 818 SUPERFAMILY SSF48208 387 792 2.95E-20 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 vm_RS05960 6dda1acf2d3ce2eef0bb026aa1a06fb9 818 SUPERFAMILY SSF48208 305 360 2.95E-20 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 vm_RS05960 6dda1acf2d3ce2eef0bb026aa1a06fb9 818 Pfam PF07971 Glycosyl hydrolase family 92 272 805 1.3E-135 T 11-11-2016 IPR012939 Glycosyl hydrolase family 92 vm_RS05960 6dda1acf2d3ce2eef0bb026aa1a06fb9 818 Gene3D G3DSA:2.70.98.10 34 353 2.0E-84 T 11-11-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 vm_RS05960 6dda1acf2d3ce2eef0bb026aa1a06fb9 818 Gene3D G3DSA:1.20.1050.60 390 482 1.4E-24 T 11-11-2016 vm_RS05960 6dda1acf2d3ce2eef0bb026aa1a06fb9 818 Gene3D G3DSA:1.20.1610.10 501 670 5.5E-55 T 11-11-2016 vm_RS05960 6dda1acf2d3ce2eef0bb026aa1a06fb9 818 Gene3D G3DSA:3.30.2080.10 671 812 5.0E-57 T 11-11-2016 vm_RS05960 6dda1acf2d3ce2eef0bb026aa1a06fb9 818 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 22 807 2.0E-166 T 11-11-2016 IPR005887 Alpha-1,2-mannosidase, putative vm_RS14115 b7e02569471aa0a782fb37b1b3f4231b 436 Gene3D G3DSA:3.40.50.300 7 223 2.6E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14115 b7e02569471aa0a782fb37b1b3f4231b 436 Pfam PF00271 Helicase conserved C-terminal domain 244 351 6.1E-30 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS14115 b7e02569471aa0a782fb37b1b3f4231b 436 SMART SM00487 28 234 7.5E-55 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS14115 b7e02569471aa0a782fb37b1b3f4231b 436 Pfam PF00270 DEAD/DEAH box helicase 33 207 8.1E-46 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 vm_RS14115 b7e02569471aa0a782fb37b1b3f4231b 436 SMART SM00490 270 351 1.9E-32 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS14115 b7e02569471aa0a782fb37b1b3f4231b 436 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 8 389 50.522 T 11-11-2016 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 vm_RS14115 b7e02569471aa0a782fb37b1b3f4231b 436 SUPERFAMILY SSF52540 85 363 9.62E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14115 b7e02569471aa0a782fb37b1b3f4231b 436 Gene3D G3DSA:3.40.50.300 224 384 8.1E-50 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14115 b7e02569471aa0a782fb37b1b3f4231b 436 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 11-11-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site vm_RS10500 2e85003546736f484a2c083942b5ea90 143 SUPERFAMILY SSF51161 2 134 3.6E-32 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS10500 2e85003546736f484a2c083942b5ea90 143 Gene3D G3DSA:2.160.10.10 30 137 1.3E-27 T 11-11-2016 vm_RS10500 2e85003546736f484a2c083942b5ea90 143 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 53 75 3.9E-4 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS10500 2e85003546736f484a2c083942b5ea90 143 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 83 115 1.9E-8 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS10500 2e85003546736f484a2c083942b5ea90 143 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 91 119 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 vm_RS10500 2e85003546736f484a2c083942b5ea90 143 PIRSF PIRSF000441 1 142 6.9E-41 T 11-11-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274 vm_RS09975 d4996864367152742248e89bfa7ca826 170 PIRSF PIRSF006443 1 166 1.1E-66 T 11-11-2016 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 vm_RS09975 d4996864367152742248e89bfa7ca826 170 Gene3D G3DSA:3.40.980.10 7 167 1.2E-50 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS09975 d4996864367152742248e89bfa7ca826 170 Pfam PF00994 Probable molybdopterin binding domain 14 156 1.2E-35 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS09975 d4996864367152742248e89bfa7ca826 170 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 72 85 - T 11-11-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 Reactome: R-HSA-947581 vm_RS09975 d4996864367152742248e89bfa7ca826 170 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 7 168 2.0E-85 T 11-11-2016 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 vm_RS09975 d4996864367152742248e89bfa7ca826 170 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 12 152 1.1E-37 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS09975 d4996864367152742248e89bfa7ca826 170 SUPERFAMILY SSF53218 7 168 2.09E-47 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS09975 d4996864367152742248e89bfa7ca826 170 SMART SM00852 14 158 2.8E-30 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS05470 fe0e60bbcb8b29364c3185744d70171a 325 SUPERFAMILY SSF56219 102 321 5.37E-23 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase vm_RS05470 fe0e60bbcb8b29364c3185744d70171a 325 Gene3D G3DSA:3.60.10.10 95 254 2.6E-10 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase vm_RS05470 fe0e60bbcb8b29364c3185744d70171a 325 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 108 315 5.1E-19 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase vm_RS12005 916e11299d10607fe4033bdc8d3f9537 277 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 51 64 - T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS12005 916e11299d10607fe4033bdc8d3f9537 277 Gene3D G3DSA:3.20.20.20 12 274 2.9E-111 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS12005 916e11299d10607fe4033bdc8d3f9537 277 SUPERFAMILY SSF51717 8 275 4.32E-105 T 11-11-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS12005 916e11299d10607fe4033bdc8d3f9537 277 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 17 272 2.4E-105 T 11-11-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 vm_RS12005 916e11299d10607fe4033bdc8d3f9537 277 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 17 32 - T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS12005 916e11299d10607fe4033bdc8d3f9537 277 Pfam PF00809 Pterin binding enzyme 18 258 3.5E-89 T 11-11-2016 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 vm_RS07555 ab481c474a1ceef62857b608e41264ed 475 Gene3D G3DSA:1.20.210.10 9 466 7.0E-71 T 11-11-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 vm_RS07555 ab481c474a1ceef62857b608e41264ed 475 SUPERFAMILY SSF81442 11 465 3.27E-122 T 11-11-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 vm_RS07555 ab481c474a1ceef62857b608e41264ed 475 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 466 2.0E-228 T 11-11-2016 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 vm_RS07555 ab481c474a1ceef62857b608e41264ed 475 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 15 445 6.8E-115 T 11-11-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 vm_RS07555 ab481c474a1ceef62857b608e41264ed 475 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 205 260 - T 11-11-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|Reactome: R-HSA-5628897|Reactome: R-HSA-611105 vm_RS13140 bdf000c1c6d14b5b54e62b82cc548f72 541 SMART SM00283 277 538 2.0E-66 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS13140 bdf000c1c6d14b5b54e62b82cc548f72 541 Pfam PF17200 Single Cache domain 2 36 185 3.1E-34 T 11-11-2016 IPR033480 Single Cache domain 2 vm_RS13140 bdf000c1c6d14b5b54e62b82cc548f72 541 Gene3D G3DSA:3.30.450.20 18 178 1.6E-31 T 11-11-2016 vm_RS13140 bdf000c1c6d14b5b54e62b82cc548f72 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 347 537 1.4E-47 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS13140 bdf000c1c6d14b5b54e62b82cc548f72 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 3 28 1.0E-27 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS13140 bdf000c1c6d14b5b54e62b82cc548f72 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 375 402 1.0E-27 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS13140 bdf000c1c6d14b5b54e62b82cc548f72 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 184 204 1.0E-27 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS13140 bdf000c1c6d14b5b54e62b82cc548f72 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 404 433 1.0E-27 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS13140 bdf000c1c6d14b5b54e62b82cc548f72 541 Gene3D G3DSA:1.10.287.950 292 505 1.0E-55 T 11-11-2016 vm_RS13140 bdf000c1c6d14b5b54e62b82cc548f72 541 SMART SM01049 30 124 1.1E-17 T 11-11-2016 IPR033480 Single Cache domain 2 vm_RS13140 bdf000c1c6d14b5b54e62b82cc548f72 541 SUPERFAMILY SSF58104 245 539 9.02E-68 T 11-11-2016 vm_RS04705 c2c8b4e5658beec760cd7b2e773b8de9 167 Pfam PF11993 Ribosomal S4P (gammaproteobacterial) 1 163 2.3E-61 T 11-11-2016 IPR021879 Ribosomal S4P (gammaproteobacterial) vm_RS03665 1aefbd5287cfe12860c27eae028d1d4c 262 SUPERFAMILY SSF51161 1 262 7.27E-82 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS03665 1aefbd5287cfe12860c27eae028d1d4c 262 Gene3D G3DSA:2.160.10.10 3 194 4.2E-50 T 11-11-2016 vm_RS03665 1aefbd5287cfe12860c27eae028d1d4c 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 2 32 4.0E-7 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS03665 1aefbd5287cfe12860c27eae028d1d4c 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 144 177 0.0012 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS03665 1aefbd5287cfe12860c27eae028d1d4c 262 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 143 1.5E-8 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS03665 1aefbd5287cfe12860c27eae028d1d4c 262 PIRSF PIRSF000456 4 262 2.6E-109 T 11-11-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 vm_RS03665 1aefbd5287cfe12860c27eae028d1d4c 262 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 20 48 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 vm_RS03665 1aefbd5287cfe12860c27eae028d1d4c 262 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 5 262 48.29 T 11-11-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 vm_RS03665 1aefbd5287cfe12860c27eae028d1d4c 262 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 180 261 2.9E-31 T 11-11-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 vm_RS03665 1aefbd5287cfe12860c27eae028d1d4c 262 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 8 260 1.4E-109 T 11-11-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 vm_RS03665 1aefbd5287cfe12860c27eae028d1d4c 262 Gene3D G3DSA:1.20.1180.10 197 262 1.1E-27 T 11-11-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12 vm_RS04615 0eb68e69b4e5cb036b5e5bf203925c34 239 SUPERFAMILY SSF75708 28 238 3.92E-66 T 11-11-2016 vm_RS04615 0eb68e69b4e5cb036b5e5bf203925c34 239 Gene3D G3DSA:1.10.287.500 58 188 1.3E-50 T 11-11-2016 vm_RS04615 0eb68e69b4e5cb036b5e5bf203925c34 239 Pfam PF04344 Chemotaxis phosphatase, CheZ 36 239 2.5E-77 T 11-11-2016 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 vm_RS04615 0eb68e69b4e5cb036b5e5bf203925c34 239 PIRSF PIRSF002884 13 239 2.0E-92 T 11-11-2016 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 vm_RS08010 f123292c2cbacc08c931e55c8de43c70 216 Pfam PF13394 4Fe-4S single cluster domain 17 119 7.4E-12 T 11-11-2016 vm_RS08010 f123292c2cbacc08c931e55c8de43c70 216 Gene3D G3DSA:3.20.20.70 22 115 6.1E-7 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS08010 f123292c2cbacc08c931e55c8de43c70 216 Pfam PF04055 Radical SAM superfamily 19 129 2.5E-8 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS08010 f123292c2cbacc08c931e55c8de43c70 216 TIGRFAM TIGR04322 rSAM_QueE_Ecoli: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 2 216 5.5E-113 T 11-11-2016 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 vm_RS08010 f123292c2cbacc08c931e55c8de43c70 216 SUPERFAMILY SSF102114 19 114 6.15E-7 T 11-11-2016 vm_RS08010 f123292c2cbacc08c931e55c8de43c70 216 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 1 216 32.988 T 11-11-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 vm_RS08010 f123292c2cbacc08c931e55c8de43c70 216 PIRSF PIRSF000370 1 216 2.4E-66 T 11-11-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703 vm_RS05485 e18b8911990b59fe1ed2d3f6f8bdb7de 340 Gene3D G3DSA:1.10.3720.10 106 328 1.9E-14 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS05485 e18b8911990b59fe1ed2d3f6f8bdb7de 340 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 131 337 3.6E-32 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS05485 e18b8911990b59fe1ed2d3f6f8bdb7de 340 SUPERFAMILY SSF161098 107 320 3.79E-15 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS09800 06f05f44fd6209bd50f4676f59b7ec4d 152 Gene3D G3DSA:1.10.10.10 4 55 1.4E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09800 06f05f44fd6209bd50f4676f59b7ec4d 152 Pfam PF01037 Lrp/AsnC ligand binding domain 69 142 1.2E-21 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain vm_RS09800 06f05f44fd6209bd50f4676f59b7ec4d 152 Gene3D G3DSA:3.30.70.920 56 140 3.6E-29 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain vm_RS09800 06f05f44fd6209bd50f4676f59b7ec4d 152 ProSitePatterns PS00519 AsnC-type HTH domain signature. 21 47 - T 11-11-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site vm_RS09800 06f05f44fd6209bd50f4676f59b7ec4d 152 SUPERFAMILY SSF46785 2 61 9.35E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09800 06f05f44fd6209bd50f4676f59b7ec4d 152 Pfam PF13412 Winged helix-turn-helix DNA-binding 3 50 2.0E-17 T 11-11-2016 vm_RS09800 06f05f44fd6209bd50f4676f59b7ec4d 152 SUPERFAMILY SSF54909 63 152 2.68E-21 T 11-11-2016 IPR011008 Dimeric alpha-beta barrel vm_RS09800 06f05f44fd6209bd50f4676f59b7ec4d 152 SMART SM00344 3 112 4.3E-45 T 11-11-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 vm_RS09800 06f05f44fd6209bd50f4676f59b7ec4d 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 3 19 5.1E-12 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS09800 06f05f44fd6209bd50f4676f59b7ec4d 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 19 30 5.1E-12 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS09800 06f05f44fd6209bd50f4676f59b7ec4d 152 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 49 5.1E-12 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS04355 c8ea93de919327746981671903d62a12 186 SUPERFAMILY SSF160443 105 181 4.05E-12 T 11-11-2016 IPR002625 Smr domain vm_RS04355 c8ea93de919327746981671903d62a12 186 Pfam PF01713 Smr domain 107 181 8.9E-19 T 11-11-2016 IPR002625 Smr domain vm_RS04355 c8ea93de919327746981671903d62a12 186 Hamap MF_01042 UPF0115 protein YfcN [yfcN]. 1 183 38.631 T 11-11-2016 IPR022990 Uncharacterised protein family UPF0115 vm_RS04355 c8ea93de919327746981671903d62a12 186 SMART SM00463 104 182 1.6E-16 T 11-11-2016 IPR002625 Smr domain vm_RS13675 157a9cc295af3c27a2d5f97b72693a8c 221 Pfam PF13505 Outer membrane protein beta-barrel domain 9 221 8.2E-11 T 11-11-2016 IPR027385 Outer membrane protein beta-barrel vm_RS13675 157a9cc295af3c27a2d5f97b72693a8c 221 TIGRFAM TIGR04219 OMP_w_GlyGly: outer membrane protein 9 221 1.8E-54 T 11-11-2016 IPR026387 Outer membrane protein vm_RS07500 c4006033486107ed93434f4f3d580daf 639 Gene3D G3DSA:3.40.50.300 2 271 1.1E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07500 c4006033486107ed93434f4f3d580daf 639 Gene3D G3DSA:3.40.50.300 318 542 8.0E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07500 c4006033486107ed93434f4f3d580daf 639 SUPERFAMILY SSF52540 308 523 6.38E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07500 c4006033486107ed93434f4f3d580daf 639 Pfam PF00005 ABC transporter 336 469 4.5E-25 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS07500 c4006033486107ed93434f4f3d580daf 639 Pfam PF00005 ABC transporter 19 185 2.3E-24 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS07500 c4006033486107ed93434f4f3d580daf 639 Pfam PF16326 ABC transporter C-terminal domain 564 633 1.3E-21 T 11-11-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 vm_RS07500 c4006033486107ed93434f4f3d580daf 639 ProSitePatterns PS00211 ABC transporters family signature. 441 455 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS07500 c4006033486107ed93434f4f3d580daf 639 Pfam PF12848 ABC transporter 224 298 9.0E-11 T 11-11-2016 IPR032781 ABC-transporter extension domain vm_RS07500 c4006033486107ed93434f4f3d580daf 639 SMART SM00382 28 230 1.7E-16 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS07500 c4006033486107ed93434f4f3d580daf 639 SMART SM00382 344 514 4.7E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS07500 c4006033486107ed93434f4f3d580daf 639 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS07500 c4006033486107ed93434f4f3d580daf 639 SUPERFAMILY SSF52540 3 94 8.13E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07500 c4006033486107ed93434f4f3d580daf 639 SUPERFAMILY SSF52540 126 245 8.13E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14935 80d8ae6394a4e0991186013619f068a4 634 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 27 358 1.9E-18 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS14935 80d8ae6394a4e0991186013619f068a4 634 Gene3D G3DSA:3.40.50.300 1 379 5.4E-33 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14935 80d8ae6394a4e0991186013619f068a4 634 SUPERFAMILY SSF52540 1 370 1.27E-26 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13185 6ec3d1aea8d33597b9963dde87dd96f4 330 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 2 325 36.306 T 11-11-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 vm_RS13185 6ec3d1aea8d33597b9963dde87dd96f4 330 Gene3D G3DSA:3.40.718.10 2 328 1.8E-135 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 vm_RS13185 6ec3d1aea8d33597b9963dde87dd96f4 330 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 5 324 6.4E-130 T 11-11-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 vm_RS13185 6ec3d1aea8d33597b9963dde87dd96f4 330 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 32 321 7.5E-108 T 11-11-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295 vm_RS13185 6ec3d1aea8d33597b9963dde87dd96f4 330 SUPERFAMILY SSF53659 3 326 1.15E-113 T 11-11-2016 vm_RS14045 fe3e49df5249299f31b4e81971fc9364 140 SUPERFAMILY SSF55729 30 111 1.66E-12 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS14045 fe3e49df5249299f31b4e81971fc9364 140 Gene3D G3DSA:3.40.630.30 30 137 1.6E-14 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS14045 fe3e49df5249299f31b4e81971fc9364 140 Pfam PF13673 Acetyltransferase (GNAT) domain 29 111 3.0E-10 T 11-11-2016 IPR000182 GNAT domain GO:0008080 vm_RS07840 443ac0ec3fd2a875325ece1a5c929973 140 SUPERFAMILY SSF55298 4 127 2.83E-25 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like vm_RS07840 443ac0ec3fd2a875325ece1a5c929973 140 Gene3D G3DSA:3.30.1330.40 6 127 1.8E-25 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like vm_RS07840 443ac0ec3fd2a875325ece1a5c929973 140 Pfam PF01042 Endoribonuclease L-PSP 12 125 2.4E-19 T 11-11-2016 IPR006175 YjgF/YER057c/UK114 family vm_RS13795 a1d1533e3ec6e25db3265c8e15906279 259 Gene3D G3DSA:1.10.287.460 34 137 4.7E-39 T 11-11-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 vm_RS13795 a1d1533e3ec6e25db3265c8e15906279 259 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 162 249 2.1E-30 T 11-11-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 vm_RS13795 a1d1533e3ec6e25db3265c8e15906279 259 Gene3D G3DSA:3.10.50.40 138 253 5.9E-47 T 11-11-2016 vm_RS13795 a1d1533e3ec6e25db3265c8e15906279 259 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 34 155 3.6E-35 T 11-11-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 vm_RS13795 a1d1533e3ec6e25db3265c8e15906279 259 SUPERFAMILY SSF54534 46 251 2.39E-64 T 11-11-2016 vm_RS05230 8c9c3f500fa1b5f592a9dfce760b3b44 846 Gene3D G3DSA:2.10.10.20 21 71 3.3E-9 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS05230 8c9c3f500fa1b5f592a9dfce760b3b44 846 SUPERFAMILY SSF51055 20 70 1.31E-8 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS05230 8c9c3f500fa1b5f592a9dfce760b3b44 846 Pfam PF02839 Carbohydrate binding domain 22 59 4.7E-9 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS05230 8c9c3f500fa1b5f592a9dfce760b3b44 846 SUPERFAMILY SSF50969 184 374 1.18E-8 T 11-11-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like vm_RS05230 8c9c3f500fa1b5f592a9dfce760b3b44 846 SMART SM00495 98 147 1.5E-6 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS05230 8c9c3f500fa1b5f592a9dfce760b3b44 846 SMART SM00495 21 70 0.0011 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS05230 8c9c3f500fa1b5f592a9dfce760b3b44 846 SUPERFAMILY SSF51055 90 147 6.93E-5 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS05230 8c9c3f500fa1b5f592a9dfce760b3b44 846 Gene3D G3DSA:2.120.10.30 183 308 3.0E-7 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like vm_RS15065 b8db7b7d88d57ea028dd48fd14b8e295 245 PIRSF PIRSF039085 1 244 2.2E-105 T 11-11-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 vm_RS15065 b8db7b7d88d57ea028dd48fd14b8e295 245 SMART SM00382 26 216 7.8E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS15065 b8db7b7d88d57ea028dd48fd14b8e295 245 Pfam PF00005 ABC transporter 17 168 3.4E-32 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS15065 b8db7b7d88d57ea028dd48fd14b8e295 245 SUPERFAMILY SSF52540 1 238 2.32E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS15065 b8db7b7d88d57ea028dd48fd14b8e295 245 Gene3D G3DSA:3.40.50.300 1 240 1.6E-80 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS15065 b8db7b7d88d57ea028dd48fd14b8e295 245 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS05820 5d221da0af082c0a035553f0b99acc27 164 Gene3D G3DSA:2.40.100.10 2 162 1.7E-52 T 11-11-2016 IPR029000 Cyclophilin-like domain vm_RS05820 5d221da0af082c0a035553f0b99acc27 164 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 36 53 - T 11-11-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 vm_RS05820 5d221da0af082c0a035553f0b99acc27 164 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 2 161 5.7E-48 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 vm_RS05820 5d221da0af082c0a035553f0b99acc27 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 15 30 4.8E-11 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 vm_RS05820 5d221da0af082c0a035553f0b99acc27 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 41 53 4.8E-11 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 vm_RS05820 5d221da0af082c0a035553f0b99acc27 164 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 4.8E-11 T 11-11-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 vm_RS05820 5d221da0af082c0a035553f0b99acc27 164 SUPERFAMILY SSF50891 1 162 3.36E-58 T 11-11-2016 IPR029000 Cyclophilin-like domain vm_RS05820 5d221da0af082c0a035553f0b99acc27 164 PIRSF PIRSF001467 1 164 5.6E-28 T 11-11-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 vm_RS09000 c3c01482987667cd5065127528ea9934 268 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 11-11-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 vm_RS09000 c3c01482987667cd5065127528ea9934 268 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 265 37.392 T 11-11-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 vm_RS09000 c3c01482987667cd5065127528ea9934 268 Gene3D G3DSA:3.20.20.70 1 267 1.2E-96 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS09000 c3c01482987667cd5065127528ea9934 268 SUPERFAMILY SSF51366 1 266 8.57E-92 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 vm_RS09000 c3c01482987667cd5065127528ea9934 268 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 263 6.8E-102 T 11-11-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 vm_RS09000 c3c01482987667cd5065127528ea9934 268 Pfam PF00290 Tryptophan synthase alpha chain 8 266 1.9E-96 T 11-11-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 vm_RS05810 ca7f6be5ad5837af8439ad142addc572 404 Gene3D G3DSA:1.10.3150.10 182 348 9.8E-33 T 11-11-2016 IPR013976 Metal-dependent hydrolase HDOD vm_RS05810 ca7f6be5ad5837af8439ad142addc572 404 Pfam PF08668 HDOD domain 205 318 5.7E-14 T 11-11-2016 IPR013976 Metal-dependent hydrolase HDOD vm_RS05810 ca7f6be5ad5837af8439ad142addc572 404 SUPERFAMILY SSF141868 5 192 7.32E-28 T 11-11-2016 IPR001633 EAL domain vm_RS05810 ca7f6be5ad5837af8439ad142addc572 404 Pfam PF00563 EAL domain 77 190 3.2E-13 T 11-11-2016 IPR001633 EAL domain vm_RS05810 ca7f6be5ad5837af8439ad142addc572 404 PIRSF PIRSF003180 1 403 3.8E-166 T 11-11-2016 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing vm_RS05810 ca7f6be5ad5837af8439ad142addc572 404 SMART SM00052 2 195 0.002 T 11-11-2016 IPR001633 EAL domain vm_RS05810 ca7f6be5ad5837af8439ad142addc572 404 SUPERFAMILY SSF109604 181 399 2.1E-41 T 11-11-2016 vm_RS05810 ca7f6be5ad5837af8439ad142addc572 404 Gene3D G3DSA:3.20.20.450 81 181 1.7E-11 T 11-11-2016 IPR001633 EAL domain vm_RS00075 0b80857cf6d53c1eeb168590e9582b50 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 2.7E-6 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS00075 0b80857cf6d53c1eeb168590e9582b50 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 2.7E-6 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS00075 0b80857cf6d53c1eeb168590e9582b50 318 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 2.7E-6 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS00075 0b80857cf6d53c1eeb168590e9582b50 318 Gene3D G3DSA:3.40.190.10 175 269 2.2E-20 T 11-11-2016 vm_RS00075 0b80857cf6d53c1eeb168590e9582b50 318 Pfam PF03466 LysR substrate binding domain 99 299 3.1E-23 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS00075 0b80857cf6d53c1eeb168590e9582b50 318 Gene3D G3DSA:1.10.10.10 5 89 4.3E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS00075 0b80857cf6d53c1eeb168590e9582b50 318 SUPERFAMILY SSF46785 7 88 2.52E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS00075 0b80857cf6d53c1eeb168590e9582b50 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 4.6E-16 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS00075 0b80857cf6d53c1eeb168590e9582b50 318 Gene3D G3DSA:3.40.190.10 274 302 3.2E-25 T 11-11-2016 vm_RS00075 0b80857cf6d53c1eeb168590e9582b50 318 Gene3D G3DSA:3.40.190.10 92 174 3.2E-25 T 11-11-2016 vm_RS00075 0b80857cf6d53c1eeb168590e9582b50 318 SUPERFAMILY SSF53850 92 298 2.53E-39 T 11-11-2016 vm_RS00445 51e8c8e744bee592a5b802839c9284d1 808 PIRSF PIRSF000437 19 808 0.0 T 11-11-2016 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166 vm_RS00445 51e8c8e744bee592a5b802839c9284d1 808 Pfam PF01553 Acyltransferase 289 424 7.0E-23 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 vm_RS00445 51e8c8e744bee592a5b802839c9284d1 808 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 11 799 0.0 T 11-11-2016 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109 vm_RS00445 51e8c8e744bee592a5b802839c9284d1 808 SUPERFAMILY SSF69593 283 489 4.32E-26 T 11-11-2016 vm_RS00445 51e8c8e744bee592a5b802839c9284d1 808 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 13 807 32.88 T 11-11-2016 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109 vm_RS00445 51e8c8e744bee592a5b802839c9284d1 808 PIRSF PIRSF500064 3 808 0.0 T 11-11-2016 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|Reactome: R-HSA-1483166|Reactome: R-HSA-2426168|Reactome: R-HSA-75109 vm_RS00445 51e8c8e744bee592a5b802839c9284d1 808 SMART SM00563 300 427 6.3E-25 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 vm_RS01015 ec52ba88048735d2c3fa281abca8de79 444 SUPERFAMILY SSF52402 149 365 1.56E-10 T 11-11-2016 vm_RS01015 ec52ba88048735d2c3fa281abca8de79 444 Gene3D G3DSA:3.40.50.620 280 373 3.8E-6 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS02840 a0ff3cc1583110bd69eb2096b7000592 246 Gene3D G3DSA:2.60.440.10 173 245 2.1E-32 T 11-11-2016 IPR027462 Z ring-associated protein D, C-terminal domain vm_RS02840 a0ff3cc1583110bd69eb2096b7000592 246 Gene3D G3DSA:1.10.3900.10 12 172 2.0E-63 T 11-11-2016 vm_RS02840 a0ff3cc1583110bd69eb2096b7000592 246 Pfam PF07072 Protein of unknown function (DUF1342) 18 224 1.5E-75 T 11-11-2016 IPR009777 Cell division protein ZapD vm_RS02840 a0ff3cc1583110bd69eb2096b7000592 246 SUPERFAMILY SSF160950 1 245 1.44E-92 T 11-11-2016 vm_RS02840 a0ff3cc1583110bd69eb2096b7000592 246 Hamap MF_01092 Cell division protein ZapD [zapD]. 3 245 32.126 T 11-11-2016 IPR009777 Cell division protein ZapD vm_RS05130 42b38919f3cf6b44d5622cabc2ad2c7a 496 SUPERFAMILY SSF58104 187 496 1.83E-61 T 11-11-2016 vm_RS05130 42b38919f3cf6b44d5622cabc2ad2c7a 496 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 308 494 1.3E-40 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS05130 42b38919f3cf6b44d5622cabc2ad2c7a 496 SMART SM00283 234 495 2.3E-41 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS05130 42b38919f3cf6b44d5622cabc2ad2c7a 496 SMART SM00304 165 219 7.6E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS05130 42b38919f3cf6b44d5622cabc2ad2c7a 496 Pfam PF00672 HAMP domain 147 215 4.6E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS05130 42b38919f3cf6b44d5622cabc2ad2c7a 496 Gene3D G3DSA:1.10.287.950 249 464 5.2E-48 T 11-11-2016 vm_RS02015 bef206baad4ac70a20f61a523a57ab30 179 Gene3D G3DSA:3.30.1440.10 2 179 7.6E-80 T 11-11-2016 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02015 bef206baad4ac70a20f61a523a57ab30 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 11-11-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02015 bef206baad4ac70a20f61a523a57ab30 179 SUPERFAMILY SSF55282 4 179 8.95E-79 T 11-11-2016 IPR022803 Ribosomal protein L5 domain Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02015 bef206baad4ac70a20f61a523a57ab30 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 3.4E-41 T 11-11-2016 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02015 bef206baad4ac70a20f61a523a57ab30 179 PIRSF PIRSF002161 1 179 3.0E-66 T 11-11-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02015 bef206baad4ac70a20f61a523a57ab30 179 Pfam PF00281 Ribosomal protein L5 24 80 1.0E-28 T 11-11-2016 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02015 bef206baad4ac70a20f61a523a57ab30 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 45.152 T 11-11-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01805 0e26c29aa50b7266a32bd5f95bb51b99 277 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 10 252 1.4E-69 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 vm_RS01805 0e26c29aa50b7266a32bd5f95bb51b99 277 TIGRFAM TIGR00571 dam: DNA adenine methylase 5 268 1.7E-95 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 vm_RS01805 0e26c29aa50b7266a32bd5f95bb51b99 277 Gene3D G3DSA:1.10.1020.10 60 156 2.8E-34 T 11-11-2016 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 vm_RS01805 0e26c29aa50b7266a32bd5f95bb51b99 277 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 31 45 1.1E-17 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 vm_RS01805 0e26c29aa50b7266a32bd5f95bb51b99 277 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 175 187 1.1E-17 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 vm_RS01805 0e26c29aa50b7266a32bd5f95bb51b99 277 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 10 26 1.1E-17 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 vm_RS01805 0e26c29aa50b7266a32bd5f95bb51b99 277 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 50 63 1.1E-17 T 11-11-2016 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 vm_RS01805 0e26c29aa50b7266a32bd5f95bb51b99 277 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 178 184 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 vm_RS01805 0e26c29aa50b7266a32bd5f95bb51b99 277 Gene3D G3DSA:3.40.50.150 1 59 8.8E-53 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS01805 0e26c29aa50b7266a32bd5f95bb51b99 277 Gene3D G3DSA:3.40.50.150 160 267 8.8E-53 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS01805 0e26c29aa50b7266a32bd5f95bb51b99 277 SUPERFAMILY SSF53335 5 268 2.22E-74 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS01805 0e26c29aa50b7266a32bd5f95bb51b99 277 PIRSF PIRSF000398 1 274 9.1E-74 T 11-11-2016 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 vm_RS04945 464dec70d0c9165c52bf8dbde00cdb72 131 SUPERFAMILY SSF54593 2 130 5.5E-27 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase vm_RS04945 464dec70d0c9165c52bf8dbde00cdb72 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 123 3.6E-15 T 11-11-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain vm_RS04945 464dec70d0c9165c52bf8dbde00cdb72 131 ProSitePatterns PS00935 Glyoxalase I signature 2. 67 79 - T 11-11-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 vm_RS04945 464dec70d0c9165c52bf8dbde00cdb72 131 Gene3D G3DSA:3.10.180.10 3 127 9.6E-31 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 SMART SM00091 21 84 6.6E-5 T 11-11-2016 IPR000014 PAS domain vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 SMART SM00388 125 191 1.8E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 Gene3D G3DSA:3.30.565.10 195 338 5.7E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 SMART SM00387 234 340 1.3E-31 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 236 339 4.0E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 SUPERFAMILY SSF47384 120 191 6.08E-10 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 Gene3D G3DSA:1.10.287.130 122 187 5.1E-7 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 SUPERFAMILY SSF55874 180 338 9.17E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 SUPERFAMILY SSF55785 7 88 5.02E-9 T 11-11-2016 IPR000014 PAS domain vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 337 1.1E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 300 318 1.1E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 271 285 1.1E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 PRINTS PR00344 Bacterial sensor protein C-terminal signature 289 299 1.1E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 Gene3D G3DSA:3.30.450.20 16 86 2.8E-8 T 11-11-2016 vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 Pfam PF00512 His Kinase A (phospho-acceptor) domain 125 189 2.6E-10 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS04270 3c8b43bafc3a2aa2776e6c951680f268 351 Pfam PF13188 PAS domain 21 67 4.2E-7 T 11-11-2016 IPR000014 PAS domain vm_RS09440 2ca4f9194b349751f6f17b0158ac8227 380 PIRSF PIRSF036883 1 380 9.9E-178 T 11-11-2016 IPR014626 Signal transduction response regulator with modified HD-GYP domain, putative vm_RS09440 2ca4f9194b349751f6f17b0158ac8227 380 SMART SM00448 6 117 1.6E-5 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09440 2ca4f9194b349751f6f17b0158ac8227 380 SUPERFAMILY SSF109604 133 367 3.11E-36 T 11-11-2016 vm_RS09440 2ca4f9194b349751f6f17b0158ac8227 380 Gene3D G3DSA:1.10.3150.10 119 373 6.3E-47 T 11-11-2016 IPR013976 Metal-dependent hydrolase HDOD vm_RS09440 2ca4f9194b349751f6f17b0158ac8227 380 Pfam PF08668 HDOD domain 142 278 1.2E-26 T 11-11-2016 IPR013976 Metal-dependent hydrolase HDOD vm_RS09440 2ca4f9194b349751f6f17b0158ac8227 380 Gene3D G3DSA:3.40.50.2300 6 117 4.0E-16 T 11-11-2016 vm_RS09440 2ca4f9194b349751f6f17b0158ac8227 380 SUPERFAMILY SSF52172 6 124 7.4E-16 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS09440 2ca4f9194b349751f6f17b0158ac8227 380 Pfam PF00072 Response regulator receiver domain 8 113 8.1E-10 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09400 46e6d4b986e004e1c826b50c2f40b551 270 SUPERFAMILY SSF53850 21 267 3.52E-29 T 11-11-2016 vm_RS09400 46e6d4b986e004e1c826b50c2f40b551 270 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 23 253 7.0E-53 T 11-11-2016 vm_RS00050 49b5d93aba74d574053ffad1a2fca1e2 305 Gene3D G3DSA:3.30.930.10 4 214 1.6E-105 T 11-11-2016 vm_RS00050 49b5d93aba74d574053ffad1a2fca1e2 305 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 7 301 4.1E-174 T 11-11-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00050 49b5d93aba74d574053ffad1a2fca1e2 305 Gene3D G3DSA:1.20.58.180 215 298 9.5E-37 T 11-11-2016 vm_RS00050 49b5d93aba74d574053ffad1a2fca1e2 305 SUPERFAMILY SSF55681 8 292 2.19E-134 T 11-11-2016 vm_RS00050 49b5d93aba74d574053ffad1a2fca1e2 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 162 177 4.2E-71 T 11-11-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00050 49b5d93aba74d574053ffad1a2fca1e2 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 139 159 4.2E-71 T 11-11-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00050 49b5d93aba74d574053ffad1a2fca1e2 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 113 137 4.2E-71 T 11-11-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00050 49b5d93aba74d574053ffad1a2fca1e2 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 82 102 4.2E-71 T 11-11-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00050 49b5d93aba74d574053ffad1a2fca1e2 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 4.2E-71 T 11-11-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00050 49b5d93aba74d574053ffad1a2fca1e2 305 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 61 76 4.2E-71 T 11-11-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00050 49b5d93aba74d574053ffad1a2fca1e2 305 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 9 291 1.3E-149 T 11-11-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS00050 49b5d93aba74d574053ffad1a2fca1e2 305 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 7 293 62.172 T 11-11-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 vm_RS12190 39b86cb06cdb5d72f0129217ff1ea7b3 820 Pfam PF04408 Helicase associated domain (HA2) 387 446 3.7E-9 T 11-11-2016 IPR007502 Helicase-associated domain GO:0004386 vm_RS12190 39b86cb06cdb5d72f0129217ff1ea7b3 820 SMART SM00847 386 476 4.9E-9 T 11-11-2016 IPR007502 Helicase-associated domain GO:0004386 vm_RS12190 39b86cb06cdb5d72f0129217ff1ea7b3 820 SMART SM00487 2 186 1.2E-15 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS12190 39b86cb06cdb5d72f0129217ff1ea7b3 820 Pfam PF00270 DEAD/DEAH box helicase 11 165 3.3E-9 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 vm_RS12190 39b86cb06cdb5d72f0129217ff1ea7b3 820 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 4 817 0.0 T 11-11-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type vm_RS12190 39b86cb06cdb5d72f0129217ff1ea7b3 820 Pfam PF08482 ATP-dependent helicase C-terminal 673 805 1.8E-51 T 11-11-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal vm_RS12190 39b86cb06cdb5d72f0129217ff1ea7b3 820 Gene3D G3DSA:3.40.50.300 203 339 1.5E-14 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12190 39b86cb06cdb5d72f0129217ff1ea7b3 820 Pfam PF00271 Helicase conserved C-terminal domain 205 326 2.5E-12 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS12190 39b86cb06cdb5d72f0129217ff1ea7b3 820 SMART SM00490 226 327 2.1E-14 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS12190 39b86cb06cdb5d72f0129217ff1ea7b3 820 SUPERFAMILY SSF52540 19 338 8.99E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12190 39b86cb06cdb5d72f0129217ff1ea7b3 820 PIRSF PIRSF005496 1 819 0.0 T 11-11-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type vm_RS12190 39b86cb06cdb5d72f0129217ff1ea7b3 820 Gene3D G3DSA:3.40.50.300 3 160 1.7E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06830 ef7074cea6fd1ee7f8ddc8a8d4717216 414 Gene3D G3DSA:3.40.50.720 2 196 1.4E-29 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS06830 ef7074cea6fd1ee7f8ddc8a8d4717216 414 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 3 145 7.3E-34 T 11-11-2016 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 vm_RS06830 ef7074cea6fd1ee7f8ddc8a8d4717216 414 SUPERFAMILY SSF51735 1 178 8.68E-17 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS06830 ef7074cea6fd1ee7f8ddc8a8d4717216 414 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 149 394 7.5E-29 T 11-11-2016 IPR032095 Saccharopine dehydrogenase, C-terminal Reactome: R-HSA-71064 vm_RS08360 fdb13a97e122ad3558b315b9149e3947 396 SUPERFAMILY SSF53383 1 391 3.75E-109 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS08360 fdb13a97e122ad3558b315b9149e3947 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 243 256 - T 11-11-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 vm_RS08360 fdb13a97e122ad3558b315b9149e3947 396 PRINTS PR00799 Aspartate aminotransferase signature 273 298 9.4E-39 T 11-11-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 vm_RS08360 fdb13a97e122ad3558b315b9149e3947 396 PRINTS PR00799 Aspartate aminotransferase signature 206 218 9.4E-39 T 11-11-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 vm_RS08360 fdb13a97e122ad3558b315b9149e3947 396 PRINTS PR00799 Aspartate aminotransferase signature 341 359 9.4E-39 T 11-11-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 vm_RS08360 fdb13a97e122ad3558b315b9149e3947 396 PRINTS PR00799 Aspartate aminotransferase signature 175 194 9.4E-39 T 11-11-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 vm_RS08360 fdb13a97e122ad3558b315b9149e3947 396 Pfam PF00155 Aminotransferase class I and II 26 391 1.1E-78 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 vm_RS08360 fdb13a97e122ad3558b315b9149e3947 396 Gene3D G3DSA:3.40.640.10 45 315 1.2E-103 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS04045 8700674a37a47444ec7d4fcd01a5d5f3 362 Gene3D G3DSA:1.20.58.410 7 94 4.2E-24 T 11-11-2016 vm_RS04045 8700674a37a47444ec7d4fcd01a5d5f3 362 Gene3D G3DSA:3.30.160.20 217 291 1.9E-36 T 11-11-2016 IPR014720 Double-stranded RNA-binding domain vm_RS04045 8700674a37a47444ec7d4fcd01a5d5f3 362 Pfam PF03462 PCRF domain 13 205 1.8E-76 T 11-11-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 vm_RS04045 8700674a37a47444ec7d4fcd01a5d5f3 362 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 359 40.752 T 11-11-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 vm_RS04045 8700674a37a47444ec7d4fcd01a5d5f3 362 SMART SM00937 67 180 6.5E-69 T 11-11-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 vm_RS04045 8700674a37a47444ec7d4fcd01a5d5f3 362 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 359 8.4E-172 T 11-11-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 vm_RS04045 8700674a37a47444ec7d4fcd01a5d5f3 362 Pfam PF00472 RF-1 domain 218 323 1.2E-41 T 11-11-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 vm_RS04045 8700674a37a47444ec7d4fcd01a5d5f3 362 SUPERFAMILY SSF75620 12 355 1.7E-137 T 11-11-2016 vm_RS04045 8700674a37a47444ec7d4fcd01a5d5f3 362 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 230 246 - T 11-11-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 vm_RS09565 0525634d8b65bc2a87b656bd93619154 107 SUPERFAMILY SSF103481 6 105 9.68E-16 T 11-11-2016 vm_RS09565 0525634d8b65bc2a87b656bd93619154 107 Pfam PF00893 Small Multidrug Resistance protein 3 94 6.9E-16 T 11-11-2016 IPR000390 Small multidrug resistance protein family GO:0016021 vm_RS13475 d41ecd40471bdd63562aad40904399c0 168 SUPERFAMILY SSF54523 16 141 1.18E-13 T 11-11-2016 vm_RS13475 d41ecd40471bdd63562aad40904399c0 168 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 14 36 8.5E-8 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS13475 d41ecd40471bdd63562aad40904399c0 168 Gene3D G3DSA:3.30.700.10 16 96 4.5E-5 T 11-11-2016 vm_RS13475 d41ecd40471bdd63562aad40904399c0 168 Pfam PF07963 Prokaryotic N-terminal methylation motif 14 32 1.7E-6 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS06815 e2695ee53766bad42357f05b76a96ec6 383 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 373 8.1E-189 T 11-11-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 vm_RS06815 e2695ee53766bad42357f05b76a96ec6 383 Gene3D G3DSA:1.20.1530.10 5 377 9.4E-151 T 11-11-2016 IPR023171 Na/H antiporter domain vm_RS06815 e2695ee53766bad42357f05b76a96ec6 383 Pfam PF06965 Na+/H+ antiporter 1 7 373 1.0E-143 T 11-11-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 vm_RS06815 e2695ee53766bad42357f05b76a96ec6 383 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 383 23.456 T 11-11-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 vm_RS11420 e3c6008dbcbe67c02dd6be93c9cc3e6a 171 Gene3D G3DSA:1.10.287.110 1 73 6.3E-27 T 11-11-2016 IPR001623 DnaJ domain vm_RS11420 e3c6008dbcbe67c02dd6be93c9cc3e6a 171 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 13 169 8.7E-43 T 11-11-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 Reactome: R-HSA-1268020 vm_RS11420 e3c6008dbcbe67c02dd6be93c9cc3e6a 171 SMART SM00271 1 66 1.2E-8 T 11-11-2016 IPR001623 DnaJ domain vm_RS11420 e3c6008dbcbe67c02dd6be93c9cc3e6a 171 Gene3D G3DSA:1.20.1280.20 81 170 6.1E-30 T 11-11-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020 vm_RS11420 e3c6008dbcbe67c02dd6be93c9cc3e6a 171 SUPERFAMILY SSF46565 1 74 1.02E-17 T 11-11-2016 IPR001623 DnaJ domain vm_RS11420 e3c6008dbcbe67c02dd6be93c9cc3e6a 171 Pfam PF07743 HSCB C-terminal oligomerisation domain 87 163 8.6E-19 T 11-11-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020 vm_RS11420 e3c6008dbcbe67c02dd6be93c9cc3e6a 171 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 1 170 26.277 T 11-11-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 Reactome: R-HSA-1268020 vm_RS11420 e3c6008dbcbe67c02dd6be93c9cc3e6a 171 SUPERFAMILY SSF47144 78 170 1.1E-24 T 11-11-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 Reactome: R-HSA-1268020 vm_RS11420 e3c6008dbcbe67c02dd6be93c9cc3e6a 171 Pfam PF00226 DnaJ domain 3 70 4.1E-7 T 11-11-2016 IPR001623 DnaJ domain vm_RS00810 35dce32910486965344850e956f9a989 466 Gene3D G3DSA:3.40.50.2300 4 126 2.6E-34 T 11-11-2016 vm_RS00810 35dce32910486965344850e956f9a989 466 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 6 465 1.5E-247 T 11-11-2016 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 vm_RS00810 35dce32910486965344850e956f9a989 466 Gene3D G3DSA:3.40.50.300 139 313 3.8E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00810 35dce32910486965344850e956f9a989 466 SUPERFAMILY SSF46689 381 465 6.81E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS00810 35dce32910486965344850e956f9a989 466 SMART SM00448 4 115 4.0E-31 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS00810 35dce32910486965344850e956f9a989 466 Pfam PF00158 Sigma-54 interaction domain 141 308 3.5E-71 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 vm_RS00810 35dce32910486965344850e956f9a989 466 SMART SM00382 161 312 1.4E-10 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS00810 35dce32910486965344850e956f9a989 466 Pfam PF00072 Response regulator receiver domain 6 115 4.1E-28 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS00810 35dce32910486965344850e956f9a989 466 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 vm_RS00810 35dce32910486965344850e956f9a989 466 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 354 363 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site vm_RS00810 35dce32910486965344850e956f9a989 466 Gene3D G3DSA:1.10.10.60 400 465 4.8E-20 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS00810 35dce32910486965344850e956f9a989 466 Gene3D G3DSA:1.10.8.60 314 391 1.9E-21 T 11-11-2016 vm_RS00810 35dce32910486965344850e956f9a989 466 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 vm_RS00810 35dce32910486965344850e956f9a989 466 SUPERFAMILY SSF52540 140 384 3.88E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00810 35dce32910486965344850e956f9a989 466 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 431 448 3.1E-7 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS00810 35dce32910486965344850e956f9a989 466 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 448 466 3.1E-7 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS00810 35dce32910486965344850e956f9a989 466 Pfam PF02954 Bacterial regulatory protein, Fis family 425 465 7.3E-16 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS00810 35dce32910486965344850e956f9a989 466 SUPERFAMILY SSF52172 2 186 8.97E-43 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS11770 0a3ca0d310f091cb131b8d6653e21ad0 322 SMART SM00904 183 307 4.0E-65 T 11-11-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 vm_RS11770 0a3ca0d310f091cb131b8d6653e21ad0 322 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 18 307 9.6E-107 T 11-11-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS11770 0a3ca0d310f091cb131b8d6653e21ad0 322 Pfam PF06574 FAD synthetase 11 167 2.8E-60 T 11-11-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS11770 0a3ca0d310f091cb131b8d6653e21ad0 322 SUPERFAMILY SSF82114 175 309 3.27E-44 T 11-11-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 vm_RS11770 0a3ca0d310f091cb131b8d6653e21ad0 322 Pfam PF01687 Riboflavin kinase 184 306 5.1E-38 T 11-11-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 Reactome: R-HSA-196843 vm_RS11770 0a3ca0d310f091cb131b8d6653e21ad0 322 PIRSF PIRSF004491 1 313 3.3E-108 T 11-11-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS11770 0a3ca0d310f091cb131b8d6653e21ad0 322 SUPERFAMILY SSF52374 15 175 8.59E-34 T 11-11-2016 vm_RS11770 0a3ca0d310f091cb131b8d6653e21ad0 322 Gene3D G3DSA:3.40.50.620 1 179 6.3E-69 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS11770 0a3ca0d310f091cb131b8d6653e21ad0 322 Gene3D G3DSA:2.40.30.30 180 310 1.4E-39 T 11-11-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 Reactome: R-HSA-196843 vm_RS11215 907a94687f93d39da56f219cde7fbdb4 132 SUPERFAMILY SSF55021 2 65 1.14E-17 T 11-11-2016 vm_RS11215 907a94687f93d39da56f219cde7fbdb4 132 Pfam PF10000 ACT domain 2 67 2.2E-24 T 11-11-2016 IPR018717 Domain of unknown function DUF2241 vm_RS11215 907a94687f93d39da56f219cde7fbdb4 132 SUPERFAMILY SSF55021 70 129 4.45E-20 T 11-11-2016 vm_RS11215 907a94687f93d39da56f219cde7fbdb4 132 Gene3D G3DSA:3.30.2130.10 1 131 1.6E-54 T 11-11-2016 vm_RS11215 907a94687f93d39da56f219cde7fbdb4 132 Pfam PF13840 ACT domain 71 127 6.0E-14 T 11-11-2016 IPR027795 GATS-like ACT domain vm_RS12315 0e35b50f6fd164376810411c48719004 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 11-11-2016 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 vm_RS12315 0e35b50f6fd164376810411c48719004 142 Pfam PF00572 Ribosomal protein L13 15 138 2.5E-57 T 11-11-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 vm_RS12315 0e35b50f6fd164376810411c48719004 142 SUPERFAMILY SSF52161 1 140 7.85E-61 T 11-11-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 vm_RS12315 0e35b50f6fd164376810411c48719004 142 PIRSF PIRSF002181 1 142 1.6E-52 T 11-11-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 vm_RS12315 0e35b50f6fd164376810411c48719004 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 28.831 T 11-11-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 vm_RS12315 0e35b50f6fd164376810411c48719004 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 142 2.6E-65 T 11-11-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12315 0e35b50f6fd164376810411c48719004 142 Gene3D G3DSA:3.90.1180.10 3 141 9.3E-66 T 11-11-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 vm_RS02370 366430cec3cbf023f2337c8b23cbe1de 129 SUPERFAMILY SSF55298 2 128 1.52E-43 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like vm_RS02370 366430cec3cbf023f2337c8b23cbe1de 129 Pfam PF01042 Endoribonuclease L-PSP 8 127 1.7E-43 T 11-11-2016 IPR006175 YjgF/YER057c/UK114 family vm_RS02370 366430cec3cbf023f2337c8b23cbe1de 129 Gene3D G3DSA:3.30.1330.40 5 128 2.7E-46 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like vm_RS02370 366430cec3cbf023f2337c8b23cbe1de 129 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 104 122 - T 11-11-2016 IPR019897 RidA, conserved site vm_RS02370 366430cec3cbf023f2337c8b23cbe1de 129 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 127 6.9E-52 T 11-11-2016 IPR006056 RidA family vm_RS14685 8bba57716c95fbdd17e59ba71a9513c2 671 Gene3D G3DSA:3.40.50.300 552 642 5.3E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14685 8bba57716c95fbdd17e59ba71a9513c2 671 Gene3D G3DSA:3.40.50.300 280 382 5.3E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14685 8bba57716c95fbdd17e59ba71a9513c2 671 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 1 670 40.554 T 11-11-2016 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 vm_RS14685 8bba57716c95fbdd17e59ba71a9513c2 671 Gene3D G3DSA:1.10.10.160 108 181 3.2E-25 T 11-11-2016 IPR013986 DExx box DNA helicase domain vm_RS14685 8bba57716c95fbdd17e59ba71a9513c2 671 Pfam PF00580 UvrD/REP helicase N-terminal domain 3 265 8.8E-78 T 11-11-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 vm_RS14685 8bba57716c95fbdd17e59ba71a9513c2 671 Gene3D G3DSA:3.40.50.300 2 104 2.6E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14685 8bba57716c95fbdd17e59ba71a9513c2 671 Gene3D G3DSA:3.40.50.300 182 279 2.6E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14685 8bba57716c95fbdd17e59ba71a9513c2 671 SUPERFAMILY SSF52540 1 641 1.09E-162 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14685 8bba57716c95fbdd17e59ba71a9513c2 671 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 2 669 0.0 T 11-11-2016 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 vm_RS14685 8bba57716c95fbdd17e59ba71a9513c2 671 Pfam PF13361 UvrD-like helicase C-terminal domain 271 615 5.7E-74 T 11-11-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 vm_RS14685 8bba57716c95fbdd17e59ba71a9513c2 671 Gene3D G3DSA:1.10.486.10 383 521 1.6E-40 T 11-11-2016 vm_RS05350 90b42a378a0498600f69f8140a530740 556 PRINTS PR00681 Ribosomal protein S1 signature 155 175 4.9E-97 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 vm_RS05350 90b42a378a0498600f69f8140a530740 556 PRINTS PR00681 Ribosomal protein S1 signature 108 124 4.9E-97 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 vm_RS05350 90b42a378a0498600f69f8140a530740 556 PRINTS PR00681 Ribosomal protein S1 signature 330 348 4.9E-97 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 vm_RS05350 90b42a378a0498600f69f8140a530740 556 PRINTS PR00681 Ribosomal protein S1 signature 126 143 4.9E-97 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 vm_RS05350 90b42a378a0498600f69f8140a530740 556 PRINTS PR00681 Ribosomal protein S1 signature 21 39 4.9E-97 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 vm_RS05350 90b42a378a0498600f69f8140a530740 556 PRINTS PR00681 Ribosomal protein S1 signature 212 233 4.9E-97 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 vm_RS05350 90b42a378a0498600f69f8140a530740 556 PRINTS PR00681 Ribosomal protein S1 signature 290 309 4.9E-97 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 vm_RS05350 90b42a378a0498600f69f8140a530740 556 PRINTS PR00681 Ribosomal protein S1 signature 39 53 4.9E-97 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 vm_RS05350 90b42a378a0498600f69f8140a530740 556 PRINTS PR00681 Ribosomal protein S1 signature 84 103 4.9E-97 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 vm_RS05350 90b42a378a0498600f69f8140a530740 556 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 9.8E-231 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 vm_RS05350 90b42a378a0498600f69f8140a530740 556 SUPERFAMILY SSF50249 342 440 8.21E-23 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05350 90b42a378a0498600f69f8140a530740 556 SUPERFAMILY SSF50249 190 277 2.09E-26 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05350 90b42a378a0498600f69f8140a530740 556 Gene3D G3DSA:2.40.50.140 358 442 8.6E-26 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05350 90b42a378a0498600f69f8140a530740 556 Gene3D G3DSA:2.40.50.140 275 357 6.3E-30 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05350 90b42a378a0498600f69f8140a530740 556 Gene3D G3DSA:2.40.50.140 445 531 6.1E-22 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05350 90b42a378a0498600f69f8140a530740 556 SUPERFAMILY SSF50249 88 174 7.17E-13 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05350 90b42a378a0498600f69f8140a530740 556 SUPERFAMILY SSF50249 429 539 5.45E-24 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05350 90b42a378a0498600f69f8140a530740 556 Gene3D G3DSA:2.40.50.140 192 274 1.5E-29 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05350 90b42a378a0498600f69f8140a530740 556 Gene3D G3DSA:2.40.50.140 21 101 4.3E-11 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05350 90b42a378a0498600f69f8140a530740 556 PIRSF PIRSF002111 1 534 7.2E-218 T 11-11-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 vm_RS05350 90b42a378a0498600f69f8140a530740 556 Gene3D G3DSA:2.40.50.140 102 172 1.7E-13 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05350 90b42a378a0498600f69f8140a530740 556 SUPERFAMILY SSF50249 255 360 5.5E-28 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS05350 90b42a378a0498600f69f8140a530740 556 SMART SM00316 19 87 2.4E-4 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS05350 90b42a378a0498600f69f8140a530740 556 SMART SM00316 190 260 1.2E-27 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS05350 90b42a378a0498600f69f8140a530740 556 SMART SM00316 103 171 1.8E-7 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS05350 90b42a378a0498600f69f8140a530740 556 SMART SM00316 449 520 6.5E-21 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS05350 90b42a378a0498600f69f8140a530740 556 SMART SM00316 362 434 1.3E-21 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS05350 90b42a378a0498600f69f8140a530740 556 SMART SM00316 275 347 8.3E-27 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS05350 90b42a378a0498600f69f8140a530740 556 Pfam PF00575 S1 RNA binding domain 362 434 3.7E-20 T 11-11-2016 IPR003029 S1 domain GO:0003676 vm_RS05350 90b42a378a0498600f69f8140a530740 556 Pfam PF00575 S1 RNA binding domain 18 86 3.1E-7 T 11-11-2016 IPR003029 S1 domain GO:0003676 vm_RS05350 90b42a378a0498600f69f8140a530740 556 Pfam PF00575 S1 RNA binding domain 275 347 7.7E-21 T 11-11-2016 IPR003029 S1 domain GO:0003676 vm_RS05350 90b42a378a0498600f69f8140a530740 556 Pfam PF00575 S1 RNA binding domain 104 171 1.1E-7 T 11-11-2016 IPR003029 S1 domain GO:0003676 vm_RS05350 90b42a378a0498600f69f8140a530740 556 Pfam PF00575 S1 RNA binding domain 189 260 1.8E-21 T 11-11-2016 IPR003029 S1 domain GO:0003676 vm_RS05350 90b42a378a0498600f69f8140a530740 556 Pfam PF00575 S1 RNA binding domain 449 520 1.3E-15 T 11-11-2016 IPR003029 S1 domain GO:0003676 vm_RS05350 90b42a378a0498600f69f8140a530740 556 SUPERFAMILY SSF50249 4 112 1.11E-17 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS11245 be57dce4c3cc556624ab2abdb5da6015 351 SUPERFAMILY SSF55729 33 117 2.48E-12 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS11245 be57dce4c3cc556624ab2abdb5da6015 351 Gene3D G3DSA:3.40.50.620 128 337 1.8E-36 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS11245 be57dce4c3cc556624ab2abdb5da6015 351 SUPERFAMILY SSF52374 146 336 7.41E-25 T 11-11-2016 vm_RS11245 be57dce4c3cc556624ab2abdb5da6015 351 Gene3D G3DSA:3.40.630.30 29 117 8.6E-11 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS11245 be57dce4c3cc556624ab2abdb5da6015 351 Pfam PF08218 Citrate lyase ligase C-terminal domain 147 333 2.1E-84 T 11-11-2016 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 vm_RS11245 be57dce4c3cc556624ab2abdb5da6015 351 SMART SM00764 147 333 3.4E-131 T 11-11-2016 IPR013166 Citrate lyase ligase, C-terminal GO:0008771 vm_RS11245 be57dce4c3cc556624ab2abdb5da6015 351 Pfam PF13673 Acetyltransferase (GNAT) domain 23 115 1.0E-6 T 11-11-2016 IPR000182 GNAT domain GO:0008080 vm_RS11245 be57dce4c3cc556624ab2abdb5da6015 351 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 122 337 1.0E-118 T 11-11-2016 vm_RS11245 be57dce4c3cc556624ab2abdb5da6015 351 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 147 202 4.9E-12 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 vm_RS11245 be57dce4c3cc556624ab2abdb5da6015 351 PIRSF PIRSF005751 1 349 2.8E-143 T 11-11-2016 IPR005216 Citrate lyase ligase GO:0008771 vm_RS11245 be57dce4c3cc556624ab2abdb5da6015 351 TIGRFAM TIGR00124 cit_ly_ligase: [citrate (pro-3S)-lyase] ligase 7 336 7.3E-138 T 11-11-2016 IPR005216 Citrate lyase ligase GO:0008771 vm_RS05695 4a0440428a74518902f7524fc7ed0bed 464 Gene3D G3DSA:3.30.1360.60 386 461 7.6E-25 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS05695 4a0440428a74518902f7524fc7ed0bed 464 Pfam PF00367 phosphotransferase system, EIIB 392 423 1.5E-12 T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 vm_RS05695 4a0440428a74518902f7524fc7ed0bed 464 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 401 418 - T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 vm_RS05695 4a0440428a74518902f7524fc7ed0bed 464 Pfam PF02378 Phosphotransferase system, EIIC 1 306 3.2E-77 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 vm_RS05695 4a0440428a74518902f7524fc7ed0bed 464 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 1 462 3.2E-217 T 11-11-2016 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0015758|GO:0016021 vm_RS05695 4a0440428a74518902f7524fc7ed0bed 464 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 364 447 4.2E-18 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS05695 4a0440428a74518902f7524fc7ed0bed 464 SUPERFAMILY SSF55604 388 460 5.75E-20 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS10640 36dcc4998e46f0c108f216651856b68c 753 SMART SM00028 289 322 2.3E-4 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS10640 36dcc4998e46f0c108f216651856b68c 753 SMART SM00028 409 442 48.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS10640 36dcc4998e46f0c108f216651856b68c 753 SMART SM00028 249 282 16.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS10640 36dcc4998e46f0c108f216651856b68c 753 SMART SM00028 83 116 44.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS10640 36dcc4998e46f0c108f216651856b68c 753 SMART SM00028 329 362 51.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS10640 36dcc4998e46f0c108f216651856b68c 753 Gene3D G3DSA:1.25.40.10 194 357 4.4E-14 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS10640 36dcc4998e46f0c108f216651856b68c 753 Gene3D G3DSA:1.25.40.10 81 159 5.7E-4 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS10640 36dcc4998e46f0c108f216651856b68c 753 SUPERFAMILY SSF48452 157 358 1.16E-16 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 ProSitePatterns PS00755 Protein secY signature 1. 76 95 - T 11-11-2016 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 ProSitePatterns PS00756 Protein secY signature 2. 171 188 - T 11-11-2016 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 PIRSF PIRSF004557 11 442 1.1E-120 T 11-11-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 23 41 3.3E-95 T 11-11-2016 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 371 389 3.3E-95 T 11-11-2016 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 403 421 3.3E-95 T 11-11-2016 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 152 177 3.3E-95 T 11-11-2016 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 178 201 3.3E-95 T 11-11-2016 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 116 139 3.3E-95 T 11-11-2016 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 316 338 3.3E-95 T 11-11-2016 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 75 95 3.3E-95 T 11-11-2016 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 PRINTS PR00303 Preprotein translocase SecY subunit signature 270 289 3.3E-95 T 11-11-2016 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 Gene3D G3DSA:1.10.3370.10 15 438 3.1E-163 T 11-11-2016 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 Hamap MF_01465 Protein translocase subunit SecY [secY]. 9 434 29.166 T 11-11-2016 IPR026593 Protein translocase subunit SecY vm_RS02055 c64e84a21ea193c60919b0917a171753 444 SUPERFAMILY SSF103491 15 425 3.27E-130 T 11-11-2016 IPR023201 SecY subunit domain Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 20 430 4.9E-134 T 11-11-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 vm_RS02055 c64e84a21ea193c60919b0917a171753 444 Pfam PF00344 SecY translocase 76 418 1.4E-117 T 11-11-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 vm_RS02750 bd80c4bfcf30dedee3012bd8b4f0a473 529 Gene3D G3DSA:1.10.101.10 450 521 9.2E-15 T 11-11-2016 IPR002477 Peptidoglycan binding-like vm_RS02750 bd80c4bfcf30dedee3012bd8b4f0a473 529 Pfam PF13401 AAA domain 42 171 2.0E-21 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS02750 bd80c4bfcf30dedee3012bd8b4f0a473 529 SMART SM00382 42 195 2.4E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS02750 bd80c4bfcf30dedee3012bd8b4f0a473 529 Pfam PF01471 Putative peptidoglycan binding domain 458 514 4.0E-9 T 11-11-2016 IPR002477 Peptidoglycan binding-like vm_RS02750 bd80c4bfcf30dedee3012bd8b4f0a473 529 Gene3D G3DSA:3.40.50.300 27 183 1.1E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02750 bd80c4bfcf30dedee3012bd8b4f0a473 529 SUPERFAMILY SSF47090 449 521 6.54E-12 T 11-11-2016 IPR002477 Peptidoglycan binding-like vm_RS02750 bd80c4bfcf30dedee3012bd8b4f0a473 529 SUPERFAMILY SSF52540 5 264 1.3E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04925 f7851718f69945465d41215eacea0c81 481 SUPERFAMILY SSF50800 74 169 4.71E-24 T 11-11-2016 IPR011037 Pyruvate kinase-like, insert domain vm_RS04925 f7851718f69945465d41215eacea0c81 481 SUPERFAMILY SSF52935 329 480 8.77E-38 T 11-11-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 Gene3D G3DSA:3.40.1380.20 332 480 2.3E-40 T 11-11-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 Gene3D G3DSA:3.20.20.60 6 76 1.5E-95 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS04925 f7851718f69945465d41215eacea0c81 481 Gene3D G3DSA:3.20.20.60 172 331 1.5E-95 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS04925 f7851718f69945465d41215eacea0c81 481 Pfam PF02887 Pyruvate kinase, alpha/beta domain 363 478 1.4E-29 T 11-11-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 6 479 9.5E-169 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 ProSitePatterns PS00110 Pyruvate kinase active site signature. 218 230 - T 11-11-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 Pfam PF00224 Pyruvate kinase, barrel domain 6 349 2.5E-131 T 11-11-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 PRINTS PR01050 Pyruvate kinase family signature 63 79 1.3E-54 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 PRINTS PR01050 Pyruvate kinase family signature 300 318 1.3E-54 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 PRINTS PR01050 Pyruvate kinase family signature 319 335 1.3E-54 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 PRINTS PR01050 Pyruvate kinase family signature 250 274 1.3E-54 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 PRINTS PR01050 Pyruvate kinase family signature 275 299 1.3E-54 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 PRINTS PR01050 Pyruvate kinase family signature 223 249 1.3E-54 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 PRINTS PR01050 Pyruvate kinase family signature 190 204 1.3E-54 T 11-11-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 Gene3D G3DSA:2.40.33.10 77 170 5.0E-28 T 11-11-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 vm_RS04925 f7851718f69945465d41215eacea0c81 481 SUPERFAMILY SSF51621 171 346 6.67E-89 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS04925 f7851718f69945465d41215eacea0c81 481 SUPERFAMILY SSF51621 4 79 6.67E-89 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS14505 7eb1806eb6398b5c7969e338dce61af3 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 35.827 T 11-11-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS14505 7eb1806eb6398b5c7969e338dce61af3 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 10 187 4.5E-69 T 11-11-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS14505 7eb1806eb6398b5c7969e338dce61af3 213 Pfam PF00156 Phosphoribosyl transferase domain 43 161 1.3E-12 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 vm_RS14505 7eb1806eb6398b5c7969e338dce61af3 213 Gene3D G3DSA:3.40.50.2020 7 212 3.5E-84 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS14505 7eb1806eb6398b5c7969e338dce61af3 213 SUPERFAMILY SSF53271 2 211 7.95E-49 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS12355 cc86803420fdaaf003d855686ae91bf6 184 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 16 183 1.5E-56 T 11-11-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 vm_RS12355 cc86803420fdaaf003d855686ae91bf6 184 Pfam PF01782 RimM N-terminal domain 17 98 2.0E-26 T 11-11-2016 IPR002676 RimM protein GO:0006364 vm_RS12355 cc86803420fdaaf003d855686ae91bf6 184 Gene3D G3DSA:2.30.30.240 108 183 5.3E-29 T 11-11-2016 vm_RS12355 cc86803420fdaaf003d855686ae91bf6 184 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 15 184 23.882 T 11-11-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 vm_RS12355 cc86803420fdaaf003d855686ae91bf6 184 SUPERFAMILY SSF50447 15 102 5.65E-25 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS12355 cc86803420fdaaf003d855686ae91bf6 184 Gene3D G3DSA:2.40.30.60 7 102 3.3E-34 T 11-11-2016 IPR002676 RimM protein GO:0006364 vm_RS12355 cc86803420fdaaf003d855686ae91bf6 184 SUPERFAMILY SSF50346 108 182 3.34E-19 T 11-11-2016 IPR011033 PRC-barrel-like vm_RS12355 cc86803420fdaaf003d855686ae91bf6 184 Pfam PF05239 PRC-barrel domain 105 179 3.2E-12 T 11-11-2016 IPR027275 PRC-barrel domain vm_RS00635 72c2b423eb7531aa8a5d8d7ecf7182c7 408 Gene3D G3DSA:3.20.20.450 81 185 1.6E-12 T 11-11-2016 IPR001633 EAL domain vm_RS00635 72c2b423eb7531aa8a5d8d7ecf7182c7 408 SUPERFAMILY SSF141868 5 199 1.12E-27 T 11-11-2016 IPR001633 EAL domain vm_RS00635 72c2b423eb7531aa8a5d8d7ecf7182c7 408 Pfam PF08668 HDOD domain 208 324 1.4E-13 T 11-11-2016 IPR013976 Metal-dependent hydrolase HDOD vm_RS00635 72c2b423eb7531aa8a5d8d7ecf7182c7 408 Gene3D G3DSA:1.10.3150.10 186 404 4.8E-31 T 11-11-2016 IPR013976 Metal-dependent hydrolase HDOD vm_RS00635 72c2b423eb7531aa8a5d8d7ecf7182c7 408 Pfam PF00563 EAL domain 76 194 4.3E-13 T 11-11-2016 IPR001633 EAL domain vm_RS00635 72c2b423eb7531aa8a5d8d7ecf7182c7 408 PIRSF PIRSF003180 1 408 1.8E-178 T 11-11-2016 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing vm_RS00635 72c2b423eb7531aa8a5d8d7ecf7182c7 408 SUPERFAMILY SSF109604 185 404 1.6E-42 T 11-11-2016 vm_RS13835 9e3be30e8ddc74f4f656b791adef1651 315 Pfam PF01715 IPP transferase 42 287 2.8E-87 T 11-11-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 vm_RS13835 9e3be30e8ddc74f4f656b791adef1651 315 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 9 295 1.9E-116 T 11-11-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 vm_RS13835 9e3be30e8ddc74f4f656b791adef1651 315 Gene3D G3DSA:3.40.50.300 8 174 2.7E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13835 9e3be30e8ddc74f4f656b791adef1651 315 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 8 301 30.444 T 11-11-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 vm_RS13835 9e3be30e8ddc74f4f656b791adef1651 315 SUPERFAMILY SSF52540 10 153 1.01E-18 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13835 9e3be30e8ddc74f4f656b791adef1651 315 Gene3D G3DSA:1.10.287.890 203 285 4.5E-34 T 11-11-2016 vm_RS08200 9c15d7047a3ea1f36882b489aa67e6d2 154 Gene3D G3DSA:3.30.420.130 1 90 5.9E-17 T 11-11-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis vm_RS08200 9c15d7047a3ea1f36882b489aa67e6d2 154 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 14 89 1.1E-9 T 11-11-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis vm_RS08200 9c15d7047a3ea1f36882b489aa67e6d2 154 SUPERFAMILY SSF53146 1 92 4.71E-17 T 11-11-2016 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis vm_RS04210 03349223a4ac583db8679e745a6700be 95 Pfam PF09904 Winged helix-turn helix 4 91 1.4E-38 T 11-11-2016 IPR017162 Uncharacterised conserved protein UCP037266 vm_RS04210 03349223a4ac583db8679e745a6700be 95 PIRSF PIRSF037266 1 94 5.1E-42 T 11-11-2016 IPR017162 Uncharacterised conserved protein UCP037266 vm_RS05670 bd200d5bbfcd1b51983ee6c5f5d7efe6 59 Gene3D G3DSA:2.20.25.10 8 57 1.3E-25 T 11-11-2016 vm_RS05670 bd200d5bbfcd1b51983ee6c5f5d7efe6 59 Pfam PF03966 Trm112p-like protein 2 41 3.2E-11 T 11-11-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 vm_RS05670 bd200d5bbfcd1b51983ee6c5f5d7efe6 59 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 27.867 T 11-11-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 vm_RS05670 bd200d5bbfcd1b51983ee6c5f5d7efe6 59 SUPERFAMILY SSF158997 1 54 1.83E-20 T 11-11-2016 vm_RS11510 888b50bd91ac4659ec08a148e9f47199 201 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 193 1.4E-7 T 11-11-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 vm_RS11510 888b50bd91ac4659ec08a148e9f47199 201 Gene3D G3DSA:3.40.30.10 3 192 6.9E-69 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS11510 888b50bd91ac4659ec08a148e9f47199 201 Pfam PF00578 AhpC/TSA family 4 139 1.1E-33 T 11-11-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 vm_RS11510 888b50bd91ac4659ec08a148e9f47199 201 SUPERFAMILY SSF52833 1 196 2.84E-66 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS11510 888b50bd91ac4659ec08a148e9f47199 201 PIRSF PIRSF000239 1 200 8.9E-59 T 11-11-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 vm_RS10250 3ffbb97ea6afea51fade4b41f46b1e1d 306 SMART SM00244 22 180 2.4E-60 T 11-11-2016 IPR001107 Band 7 domain vm_RS10250 3ffbb97ea6afea51fade4b41f46b1e1d 306 SUPERFAMILY SSF117892 53 187 3.66E-42 T 11-11-2016 IPR001107 Band 7 domain vm_RS10250 3ffbb97ea6afea51fade4b41f46b1e1d 306 Pfam PF16200 C-terminal region of band_7 241 303 3.0E-7 T 11-11-2016 IPR032435 Band 7, C-terminal extension vm_RS10250 3ffbb97ea6afea51fade4b41f46b1e1d 306 PRINTS PR00721 Stomatin signature 132 155 5.8E-29 T 11-11-2016 IPR001972 Stomatin family GO:0016020 vm_RS10250 3ffbb97ea6afea51fade4b41f46b1e1d 306 PRINTS PR00721 Stomatin signature 156 174 5.8E-29 T 11-11-2016 IPR001972 Stomatin family GO:0016020 vm_RS10250 3ffbb97ea6afea51fade4b41f46b1e1d 306 PRINTS PR00721 Stomatin signature 175 196 5.8E-29 T 11-11-2016 IPR001972 Stomatin family GO:0016020 vm_RS10250 3ffbb97ea6afea51fade4b41f46b1e1d 306 PRINTS PR00721 Stomatin signature 77 98 5.8E-29 T 11-11-2016 IPR001972 Stomatin family GO:0016020 vm_RS10250 3ffbb97ea6afea51fade4b41f46b1e1d 306 PRINTS PR00721 Stomatin signature 112 129 5.8E-29 T 11-11-2016 IPR001972 Stomatin family GO:0016020 vm_RS10250 3ffbb97ea6afea51fade4b41f46b1e1d 306 Pfam PF01145 SPFH domain / Band 7 family 26 195 1.5E-29 T 11-11-2016 IPR001107 Band 7 domain vm_RS10250 3ffbb97ea6afea51fade4b41f46b1e1d 306 ProSitePatterns PS01270 Band 7 protein family signature. 136 164 - T 11-11-2016 IPR018080 Band 7/stomatin-like, conserved site vm_RS14220 e6da9496ba29e92c884a5a699afe7972 546 SUPERFAMILY SSF58104 237 546 4.84E-72 T 11-11-2016 vm_RS14220 e6da9496ba29e92c884a5a699afe7972 546 Pfam PF17200 Single Cache domain 2 44 187 7.1E-48 T 11-11-2016 IPR033480 Single Cache domain 2 vm_RS14220 e6da9496ba29e92c884a5a699afe7972 546 SMART SM00304 215 269 2.9E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS14220 e6da9496ba29e92c884a5a699afe7972 546 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 341 544 5.2E-47 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS14220 e6da9496ba29e92c884a5a699afe7972 546 Pfam PF00672 HAMP domain 196 265 7.4E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS14220 e6da9496ba29e92c884a5a699afe7972 546 Gene3D G3DSA:3.30.450.20 30 185 2.4E-59 T 11-11-2016 vm_RS14220 e6da9496ba29e92c884a5a699afe7972 546 Gene3D G3DSA:1.10.287.950 298 515 6.7E-55 T 11-11-2016 vm_RS14220 e6da9496ba29e92c884a5a699afe7972 546 SMART SM01049 38 132 6.7E-42 T 11-11-2016 IPR033480 Single Cache domain 2 vm_RS14220 e6da9496ba29e92c884a5a699afe7972 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 298 327 5.9E-5 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS14220 e6da9496ba29e92c884a5a699afe7972 546 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 411 440 5.9E-5 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS14220 e6da9496ba29e92c884a5a699afe7972 546 SMART SM00283 284 545 3.6E-64 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS12365 abf62355c79b7057e698736a73208159 461 Gene3D G3DSA:1.20.120.140 2 89 2.0E-34 T 11-11-2016 vm_RS12365 abf62355c79b7057e698736a73208159 461 Pfam PF02978 Signal peptide binding domain 329 427 4.7E-34 T 11-11-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 vm_RS12365 abf62355c79b7057e698736a73208159 461 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 429 7.6E-179 T 11-11-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 vm_RS12365 abf62355c79b7057e698736a73208159 461 SMART SM00963 1 86 3.9E-36 T 11-11-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS12365 abf62355c79b7057e698736a73208159 461 SUPERFAMILY SSF52540 42 353 1.19E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12365 abf62355c79b7057e698736a73208159 461 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS12365 abf62355c79b7057e698736a73208159 461 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.3E-21 T 11-11-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS12365 abf62355c79b7057e698736a73208159 461 Gene3D G3DSA:1.10.260.30 329 431 1.4E-41 T 11-11-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 vm_RS12365 abf62355c79b7057e698736a73208159 461 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 439 34.074 T 11-11-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 vm_RS12365 abf62355c79b7057e698736a73208159 461 SUPERFAMILY SSF47446 329 430 1.8E-38 T 11-11-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 vm_RS12365 abf62355c79b7057e698736a73208159 461 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 9.5E-75 T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS12365 abf62355c79b7057e698736a73208159 461 SMART SM00382 99 247 2.2E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS12365 abf62355c79b7057e698736a73208159 461 SMART SM00962 100 296 1.2E-115 T 11-11-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 vm_RS12365 abf62355c79b7057e698736a73208159 461 Gene3D G3DSA:3.40.50.300 93 297 7.0E-78 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12010 d2089b94e9da6fbb1ba2284158017ee0 647 Pfam PF06480 FtsH Extracellular 5 94 1.0E-12 T 11-11-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 vm_RS12010 d2089b94e9da6fbb1ba2284158017ee0 647 SUPERFAMILY SSF52540 144 392 2.56E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12010 d2089b94e9da6fbb1ba2284158017ee0 647 ProSitePatterns PS00674 AAA-protein family signature. 292 310 - T 11-11-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 vm_RS12010 d2089b94e9da6fbb1ba2284158017ee0 647 Gene3D G3DSA:1.10.8.60 333 406 3.3E-27 T 11-11-2016 vm_RS12010 d2089b94e9da6fbb1ba2284158017ee0 647 SUPERFAMILY SSF140990 403 598 3.27E-75 T 11-11-2016 vm_RS12010 d2089b94e9da6fbb1ba2284158017ee0 647 Gene3D G3DSA:3.40.50.300 145 332 4.5E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12010 d2089b94e9da6fbb1ba2284158017ee0 647 SMART SM00382 185 324 3.6E-26 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS12010 d2089b94e9da6fbb1ba2284158017ee0 647 Pfam PF01434 Peptidase family M41 383 592 5.7E-81 T 11-11-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 vm_RS12010 d2089b94e9da6fbb1ba2284158017ee0 647 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 610 37.23 T 11-11-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 vm_RS12010 d2089b94e9da6fbb1ba2284158017ee0 647 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 189 321 5.6E-46 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS12010 d2089b94e9da6fbb1ba2284158017ee0 647 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 102 594 4.8E-243 T 11-11-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 vm_RS06715 6b7ed3c949c7abc26589adb8cbe507d2 567 Gene3D G3DSA:1.10.287.950 319 538 1.4E-59 T 11-11-2016 vm_RS06715 6b7ed3c949c7abc26589adb8cbe507d2 567 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 350 564 4.8E-49 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS06715 6b7ed3c949c7abc26589adb8cbe507d2 567 Pfam PF00672 HAMP domain 219 284 1.6E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS06715 6b7ed3c949c7abc26589adb8cbe507d2 567 SMART SM00283 305 566 1.6E-71 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS06715 6b7ed3c949c7abc26589adb8cbe507d2 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 24 49 1.6E-21 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS06715 6b7ed3c949c7abc26589adb8cbe507d2 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 403 430 1.6E-21 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS06715 6b7ed3c949c7abc26589adb8cbe507d2 567 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 432 461 1.6E-21 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS06715 6b7ed3c949c7abc26589adb8cbe507d2 567 SUPERFAMILY SSF58104 258 566 2.62E-76 T 11-11-2016 vm_RS06715 6b7ed3c949c7abc26589adb8cbe507d2 567 Pfam PF12729 Four helix bundle sensory module for signal transduction 24 205 4.5E-11 T 11-11-2016 IPR024478 4HB MCP domain vm_RS06715 6b7ed3c949c7abc26589adb8cbe507d2 567 SMART SM00304 238 290 4.9E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS04455 c57439918ba77a874b066f0bccfb44ba 257 SUPERFAMILY SSF53474 5 254 1.2E-49 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS04455 c57439918ba77a874b066f0bccfb44ba 257 PRINTS PR00412 Epoxide hydrolase signature 39 54 6.2E-5 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS04455 c57439918ba77a874b066f0bccfb44ba 257 PRINTS PR00412 Epoxide hydrolase signature 230 252 6.2E-5 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS04455 c57439918ba77a874b066f0bccfb44ba 257 PRINTS PR00412 Epoxide hydrolase signature 82 95 6.2E-5 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS04455 c57439918ba77a874b066f0bccfb44ba 257 Pfam PF12697 Alpha/beta hydrolase family 16 247 3.8E-24 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 vm_RS04455 c57439918ba77a874b066f0bccfb44ba 257 Gene3D G3DSA:3.40.50.1820 5 254 2.5E-48 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS07290 15c6a085e5f632c37b012ba49077f319 91 Pfam PF11173 Protein of unknown function (DUF2960) 1 75 3.4E-35 T 11-11-2016 IPR021343 Protein of unknown function DUF2960 vm_RS07470 c71655679d24d263dafd840e059dc78c 72 Pfam PF11197 Protein of unknown function (DUF2835) 4 70 2.6E-28 T 11-11-2016 IPR021363 Protein of unknown function DUF2835 vm_RS14790 829d5b667d158904ed247b622ff782f1 485 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 85 468 8.0E-119 T 11-11-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 vm_RS14790 829d5b667d158904ed247b622ff782f1 485 PIRSF PIRSF006247 1 485 6.7E-179 T 11-11-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 vm_RS14790 829d5b667d158904ed247b622ff782f1 485 Pfam PF02386 Cation transport protein 39 477 4.6E-92 T 11-11-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 vm_RS02290 adc09570485d8e43bcc7eeeb909d3f30 487 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 374 393 - T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 vm_RS02290 adc09570485d8e43bcc7eeeb909d3f30 487 Pfam PF04552 Sigma-54, DNA binding domain 327 485 1.5E-73 T 11-11-2016 IPR007634 RNA polymerase sigma factor 54, DNA-binding vm_RS02290 adc09570485d8e43bcc7eeeb909d3f30 487 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 4 49 2.0E-17 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 vm_RS02290 adc09570485d8e43bcc7eeeb909d3f30 487 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 465 472 - T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 vm_RS02290 adc09570485d8e43bcc7eeeb909d3f30 487 PRINTS PR00045 Sigma-54 factor signature 198 215 4.3E-30 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 vm_RS02290 adc09570485d8e43bcc7eeeb909d3f30 487 PRINTS PR00045 Sigma-54 factor signature 386 398 4.3E-30 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 vm_RS02290 adc09570485d8e43bcc7eeeb909d3f30 487 PRINTS PR00045 Sigma-54 factor signature 402 413 4.3E-30 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 vm_RS02290 adc09570485d8e43bcc7eeeb909d3f30 487 PRINTS PR00045 Sigma-54 factor signature 460 478 4.3E-30 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 vm_RS02290 adc09570485d8e43bcc7eeeb909d3f30 487 PIRSF PIRSF000774 1 487 3.9E-153 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 vm_RS02290 adc09570485d8e43bcc7eeeb909d3f30 487 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 484 2.3E-156 T 11-11-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 vm_RS02290 adc09570485d8e43bcc7eeeb909d3f30 487 Pfam PF04963 Sigma-54 factor, core binding domain 126 315 1.7E-59 T 11-11-2016 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 vm_RS00145 341ee4e3681f2d18519a7d4cea074bdd 263 Pfam PF07070 SpoOM protein 4 219 2.9E-79 T 11-11-2016 IPR009776 Sporulation stage 0, protein M vm_RS07235 1f4d4692a6d48f7c6bd79c41bd3fcf6e 283 Pfam PF14743 DNA ligase OB-like domain 216 280 1.4E-29 T 11-11-2016 IPR029319 DNA ligase, OB-like domain vm_RS07235 1f4d4692a6d48f7c6bd79c41bd3fcf6e 283 Gene3D G3DSA:2.40.50.140 188 281 3.2E-36 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS07235 1f4d4692a6d48f7c6bd79c41bd3fcf6e 283 Pfam PF01068 ATP dependent DNA ligase domain 116 201 4.6E-6 T 11-11-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 vm_RS07235 1f4d4692a6d48f7c6bd79c41bd3fcf6e 283 Gene3D G3DSA:3.30.1490.70 46 53 3.1E-8 T 11-11-2016 vm_RS07235 1f4d4692a6d48f7c6bd79c41bd3fcf6e 283 Gene3D G3DSA:3.30.1490.70 154 187 3.1E-8 T 11-11-2016 vm_RS07235 1f4d4692a6d48f7c6bd79c41bd3fcf6e 283 ProSitePatterns PS00333 ATP-dependent DNA ligase signature 2. 178 201 - T 11-11-2016 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 vm_RS07235 1f4d4692a6d48f7c6bd79c41bd3fcf6e 283 SUPERFAMILY SSF50249 175 280 9.14E-32 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS07235 1f4d4692a6d48f7c6bd79c41bd3fcf6e 283 SUPERFAMILY SSF56091 30 201 6.0E-36 T 11-11-2016 vm_RS07910 bd5b8bd6927aaa83112abcc18361e796 184 Pfam PF06693 Protein of unknown function (DUF1190) 38 180 5.3E-25 T 11-11-2016 IPR009576 Biofilm formation YgiB vm_RS06120 1753065c15191ca0d7c3fad1c7f19ff7 172 Pfam PF01478 Type IV leader peptidase family 7 108 2.6E-12 T 11-11-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 vm_RS09810 6e67d487334551ec1744a09a88d171f1 353 Pfam PF08496 Peptidase family S49 N-terminal 2 162 3.6E-55 T 11-11-2016 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 vm_RS09810 6e67d487334551ec1744a09a88d171f1 353 SUPERFAMILY SSF52096 103 213 5.58E-28 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS09810 6e67d487334551ec1744a09a88d171f1 353 SUPERFAMILY SSF52096 244 303 5.58E-28 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS09810 6e67d487334551ec1744a09a88d171f1 353 Gene3D G3DSA:3.90.226.10 102 209 5.7E-35 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS09810 6e67d487334551ec1744a09a88d171f1 353 Gene3D G3DSA:3.90.226.10 275 310 5.7E-35 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS09810 6e67d487334551ec1744a09a88d171f1 353 Pfam PF01343 Peptidase family S49 166 314 1.2E-47 T 11-11-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 vm_RS08875 18a1490e7f31c1b430e17dd5e514d6df 227 PIRSF PIRSF028111 1 227 3.6E-83 T 11-11-2016 IPR016868 Bacteriophage B3, Orf5 vm_RS08875 18a1490e7f31c1b430e17dd5e514d6df 227 Pfam PF10979 Protein of unknown function (DUF2786) 5 42 1.3E-11 T 11-11-2016 IPR024498 Domain of unknown function DUF2786 vm_RS07020 68160d06d5b381a13b4969b915a9513a 171 Gene3D G3DSA:1.25.40.20 37 157 4.2E-26 T 11-11-2016 IPR020683 Ankyrin repeat-containing domain vm_RS07020 68160d06d5b381a13b4969b915a9513a 171 Pfam PF12796 Ankyrin repeats (3 copies) 39 124 3.1E-11 T 11-11-2016 IPR020683 Ankyrin repeat-containing domain vm_RS07020 68160d06d5b381a13b4969b915a9513a 171 SMART SM00248 101 132 640.0 T 11-11-2016 IPR002110 Ankyrin repeat GO:0005515 vm_RS07020 68160d06d5b381a13b4969b915a9513a 171 SMART SM00248 35 64 12.0 T 11-11-2016 IPR002110 Ankyrin repeat GO:0005515 vm_RS07020 68160d06d5b381a13b4969b915a9513a 171 SMART SM00248 68 97 0.023 T 11-11-2016 IPR002110 Ankyrin repeat GO:0005515 vm_RS07020 68160d06d5b381a13b4969b915a9513a 171 SUPERFAMILY SSF48403 35 156 1.43E-25 T 11-11-2016 IPR020683 Ankyrin repeat-containing domain vm_RS11575 ee9bff2c8c2f7c862ffde5c0e92d442b 466 Pfam PF01136 Peptidase family U32 80 355 7.6E-97 T 11-11-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 vm_RS11575 ee9bff2c8c2f7c862ffde5c0e92d442b 466 Pfam PF16325 Peptidase family U32 C-terminal domain 371 452 7.6E-21 T 11-11-2016 IPR032525 Peptidase family U32, C-terminal vm_RS11575 ee9bff2c8c2f7c862ffde5c0e92d442b 466 ProSitePatterns PS01276 Peptidase family U32 signature. 167 185 - T 11-11-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 vm_RS07610 e834a51e826fe39a1a78e4ed6cd6fb97 219 Pfam PF11205 Protein of unknown function (DUF2987) 22 165 3.9E-52 T 11-11-2016 IPR021370 Protein of unknown function DUF2987 vm_RS15090 231bb7a1f019f4960c253c4e4aae2a8a 159 Gene3D G3DSA:3.10.150.10 3 66 5.7E-14 T 11-11-2016 vm_RS15090 231bb7a1f019f4960c253c4e4aae2a8a 159 Gene3D G3DSA:3.10.150.10 67 158 2.4E-25 T 11-11-2016 vm_RS15090 231bb7a1f019f4960c253c4e4aae2a8a 159 SUPERFAMILY SSF55979 71 157 5.46E-20 T 11-11-2016 vm_RS15090 231bb7a1f019f4960c253c4e4aae2a8a 159 Pfam PF02767 DNA polymerase III beta subunit, central domain 75 158 1.1E-23 T 11-11-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS15090 231bb7a1f019f4960c253c4e4aae2a8a 159 SMART SM00480 1 159 1.7E-5 T 11-11-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS15090 231bb7a1f019f4960c253c4e4aae2a8a 159 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 4 64 8.0E-16 T 11-11-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS15090 231bb7a1f019f4960c253c4e4aae2a8a 159 SUPERFAMILY SSF55979 5 66 8.16E-12 T 11-11-2016 vm_RS15090 231bb7a1f019f4960c253c4e4aae2a8a 159 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 9 154 9.9E-43 T 11-11-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS08675 831a59ee240f92fb4d1d23b0be1ad638 341 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 3 339 5.9E-135 T 11-11-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 vm_RS08675 831a59ee240f92fb4d1d23b0be1ad638 341 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 1 341 37.015 T 11-11-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 vm_RS08675 831a59ee240f92fb4d1d23b0be1ad638 341 Gene3D G3DSA:1.10.1610.10 2 66 1.2E-28 T 11-11-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 vm_RS08675 831a59ee240f92fb4d1d23b0be1ad638 341 Gene3D G3DSA:3.40.50.10210 67 322 9.8E-106 T 11-11-2016 vm_RS08675 831a59ee240f92fb4d1d23b0be1ad638 341 SUPERFAMILY SSF52733 2 340 7.85E-112 T 11-11-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 vm_RS08675 831a59ee240f92fb4d1d23b0be1ad638 341 Pfam PF02277 Phosphoribosyltransferase 2 339 2.5E-127 T 11-11-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 vm_RS09940 ef99bc58d7f1410da5b005a3eaabc5be 253 SUPERFAMILY SSF53167 6 249 9.03E-72 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 vm_RS09940 ef99bc58d7f1410da5b005a3eaabc5be 253 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 65 80 - T 11-11-2016 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS09940 ef99bc58d7f1410da5b005a3eaabc5be 253 Pfam PF01048 Phosphorylase superfamily 20 251 9.7E-39 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 vm_RS09940 ef99bc58d7f1410da5b005a3eaabc5be 253 TIGRFAM TIGR01718 Uridine-psphlse: uridine phosphorylase 5 251 5.5E-110 T 11-11-2016 IPR010058 Uridine phosphorylase GO:0004850|GO:0005737|GO:0009166 KEGG: 00240+2.4.2.3|KEGG: 00983+2.4.2.3 vm_RS09940 ef99bc58d7f1410da5b005a3eaabc5be 253 Gene3D G3DSA:3.40.50.1580 3 251 2.1E-84 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 vm_RS09310 c151aaf9c46015d42e7bf045c9645739 449 Gene3D G3DSA:1.10.8.60 155 223 1.6E-6 T 11-11-2016 vm_RS09310 c151aaf9c46015d42e7bf045c9645739 449 Gene3D G3DSA:1.20.272.10 250 348 7.2E-43 T 11-11-2016 vm_RS09310 c151aaf9c46015d42e7bf045c9645739 449 Gene3D G3DSA:3.40.50.300 13 154 3.9E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09310 c151aaf9c46015d42e7bf045c9645739 449 SUPERFAMILY SSF48019 253 435 1.47E-71 T 11-11-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 vm_RS09310 c151aaf9c46015d42e7bf045c9645739 449 Pfam PF12002 MgsA AAA+ ATPase C terminal 269 435 3.1E-66 T 11-11-2016 IPR021886 MgsA AAA+ ATPase C-terminal vm_RS09310 c151aaf9c46015d42e7bf045c9645739 449 SMART SM00382 50 166 9.5E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS09310 c151aaf9c46015d42e7bf045c9645739 449 SUPERFAMILY SSF52540 11 235 1.2E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09310 c151aaf9c46015d42e7bf045c9645739 449 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 54 159 1.3E-16 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS09310 c151aaf9c46015d42e7bf045c9645739 449 Gene3D G3DSA:1.10.3710.10 349 447 1.9E-33 T 11-11-2016 vm_RS09310 c151aaf9c46015d42e7bf045c9645739 449 Pfam PF16193 AAA C-terminal domain 193 268 6.4E-18 T 11-11-2016 IPR032423 AAA ATPase, C-terminal domain vm_RS07030 658652341486b6d6aa44ff0ae24c1924 111 PIRSF PIRSF029143 6 110 4.6E-44 T 11-11-2016 IPR008314 Uncharacterised conserved protein UCP029143 vm_RS07030 658652341486b6d6aa44ff0ae24c1924 111 SUPERFAMILY SSF88697 7 108 7.21E-33 T 11-11-2016 IPR015947 PUA-like domain vm_RS07030 658652341486b6d6aa44ff0ae24c1924 111 Hamap MF_00684 UPF0267 protein YqfB [yqfB]. 7 108 29.787 T 11-11-2016 IPR008314 Uncharacterised conserved protein UCP029143 vm_RS07030 658652341486b6d6aa44ff0ae24c1924 111 SMART SM01022 11 109 9.1E-26 T 11-11-2016 IPR007374 ASCH domain vm_RS07030 658652341486b6d6aa44ff0ae24c1924 111 Pfam PF04266 ASCH domain 12 104 2.7E-14 T 11-11-2016 IPR007374 ASCH domain vm_RS07030 658652341486b6d6aa44ff0ae24c1924 111 Gene3D G3DSA:2.30.130.30 8 108 1.7E-42 T 11-11-2016 vm_RS09735 259a22a29048922d2c7e78eab2a8735a 548 SUPERFAMILY SSF52540 379 472 8.57E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09735 259a22a29048922d2c7e78eab2a8735a 548 SUPERFAMILY SSF52540 213 338 8.57E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09735 259a22a29048922d2c7e78eab2a8735a 548 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 391 459 1.2E-10 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS09735 259a22a29048922d2c7e78eab2a8735a 548 Gene3D G3DSA:3.40.50.300 211 474 2.6E-14 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08125 9413548e7286152755fbd3247c379b87 625 Gene3D G3DSA:2.30.38.10 413 492 6.9E-8 T 11-11-2016 vm_RS08125 9413548e7286152755fbd3247c379b87 625 Pfam PF00501 AMP-binding enzyme 65 501 2.4E-82 T 11-11-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 vm_RS08125 9413548e7286152755fbd3247c379b87 625 Gene3D G3DSA:3.40.50.980 62 242 4.0E-36 T 11-11-2016 vm_RS08125 9413548e7286152755fbd3247c379b87 625 Gene3D G3DSA:3.40.50.980 243 403 4.2E-29 T 11-11-2016 vm_RS08125 9413548e7286152755fbd3247c379b87 625 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 4 56 1.9E-16 T 11-11-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 vm_RS08125 9413548e7286152755fbd3247c379b87 625 Pfam PF13193 AMP-binding enzyme C-terminal domain 510 589 4.3E-25 T 11-11-2016 IPR025110 AMP-binding enzyme C-terminal domain vm_RS08125 9413548e7286152755fbd3247c379b87 625 Gene3D G3DSA:3.30.300.30 496 599 2.3E-24 T 11-11-2016 vm_RS08125 9413548e7286152755fbd3247c379b87 625 ProSitePatterns PS00455 Putative AMP-binding domain signature. 237 248 - T 11-11-2016 IPR020845 AMP-binding, conserved site vm_RS08125 9413548e7286152755fbd3247c379b87 625 SUPERFAMILY SSF56801 3 602 3.79E-156 T 11-11-2016 vm_RS07760 916a6f6ac8c0a371a37ebfbc41aebbb6 259 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 48 245 6.8E-60 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 vm_RS07760 916a6f6ac8c0a371a37ebfbc41aebbb6 259 TIGRFAM TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit 2 248 7.5E-134 T 11-11-2016 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit GO:0008704|GO:0018800|GO:1901023 KEGG: 00350+5.3.3.10+4.1.1.68 vm_RS07760 916a6f6ac8c0a371a37ebfbc41aebbb6 259 SUPERFAMILY SSF56529 37 251 6.67E-74 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 vm_RS07760 916a6f6ac8c0a371a37ebfbc41aebbb6 259 Gene3D G3DSA:3.90.850.10 38 249 1.0E-79 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 vm_RS10510 c72eee1e4453ded694bd839f1be0575f 469 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 316 454 9.3E-8 T 11-11-2016 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain vm_RS10510 c72eee1e4453ded694bd839f1be0575f 469 Pfam PF13440 Polysaccharide biosynthesis protein 27 310 3.3E-23 T 11-11-2016 vm_RS14635 819eb13b6a1c43cbd6db7536b6ed1f02 325 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 318 3.7E-38 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS14635 819eb13b6a1c43cbd6db7536b6ed1f02 325 SUPERFAMILY SSF161098 90 302 1.05E-16 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS14635 819eb13b6a1c43cbd6db7536b6ed1f02 325 Gene3D G3DSA:1.10.3720.10 88 312 1.1E-17 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12480 512d0a149797826ee2557197ed429340 354 Pfam PF00154 recA bacterial DNA recombination protein 7 267 3.8E-143 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 vm_RS12480 512d0a149797826ee2557197ed429340 354 SUPERFAMILY SSF54752 269 325 4.58E-21 T 11-11-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal vm_RS12480 512d0a149797826ee2557197ed429340 354 SMART SM00382 57 228 1.4E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS12480 512d0a149797826ee2557197ed429340 354 PRINTS PR00142 RecA protein signature 127 156 5.8E-84 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 vm_RS12480 512d0a149797826ee2557197ed429340 354 PRINTS PR00142 RecA protein signature 210 238 5.8E-84 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 vm_RS12480 512d0a149797826ee2557197ed429340 354 PRINTS PR00142 RecA protein signature 93 122 5.8E-84 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 vm_RS12480 512d0a149797826ee2557197ed429340 354 PRINTS PR00142 RecA protein signature 243 272 5.8E-84 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 vm_RS12480 512d0a149797826ee2557197ed429340 354 PRINTS PR00142 RecA protein signature 297 314 5.8E-84 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 vm_RS12480 512d0a149797826ee2557197ed429340 354 PRINTS PR00142 RecA protein signature 165 194 5.8E-84 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 vm_RS12480 512d0a149797826ee2557197ed429340 354 Gene3D G3DSA:3.40.50.300 26 267 4.2E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12480 512d0a149797826ee2557197ed429340 354 ProSitePatterns PS00321 recA signature. 213 221 - T 11-11-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 vm_RS12480 512d0a149797826ee2557197ed429340 354 Hamap MF_00268 Protein RecA [recA]. 5 329 50.628 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 vm_RS12480 512d0a149797826ee2557197ed429340 354 SUPERFAMILY SSF52540 4 266 4.92E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12480 512d0a149797826ee2557197ed429340 354 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 2.8E-170 T 11-11-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 vm_RS12480 512d0a149797826ee2557197ed429340 354 Gene3D G3DSA:3.30.250.10 268 326 2.2E-28 T 11-11-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal vm_RS01730 9cdd5f105c2005d6960810ac9055222a 404 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 12 20 - T 11-11-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS01730 9cdd5f105c2005d6960810ac9055222a 404 SUPERFAMILY SSF52402 7 170 1.01E-47 T 11-11-2016 vm_RS01730 9cdd5f105c2005d6960810ac9055222a 404 Gene3D G3DSA:3.40.50.620 7 175 4.6E-64 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS01730 9cdd5f105c2005d6960810ac9055222a 404 TIGRFAM TIGR00032 argG: argininosuccinate synthase 8 395 5.5E-134 T 11-11-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS01730 9cdd5f105c2005d6960810ac9055222a 404 SUPERFAMILY SSF69864 177 402 1.16E-84 T 11-11-2016 vm_RS01730 9cdd5f105c2005d6960810ac9055222a 404 Pfam PF00764 Arginosuccinate synthase 10 396 6.4E-144 T 11-11-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS01730 9cdd5f105c2005d6960810ac9055222a 404 Gene3D G3DSA:3.90.1260.10 179 403 3.2E-85 T 11-11-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS01730 9cdd5f105c2005d6960810ac9055222a 404 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 121 132 - T 11-11-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS01730 9cdd5f105c2005d6960810ac9055222a 404 Hamap MF_00005 Argininosuccinate synthase [argG]. 6 402 52.13 T 11-11-2016 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS05800 6a68359c3c2bffe9b4f29a5a5e642b67 338 Gene3D G3DSA:2.40.160.10 107 338 1.9E-10 T 11-11-2016 IPR023614 Porin domain vm_RS05800 6a68359c3c2bffe9b4f29a5a5e642b67 338 SUPERFAMILY SSF56935 40 336 1.59E-19 T 11-11-2016 vm_RS00815 6911b47f1266563097888be5f137eaf9 352 Pfam PF00512 His Kinase A (phospho-acceptor) domain 133 190 3.1E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS00815 6911b47f1266563097888be5f137eaf9 352 Gene3D G3DSA:3.30.565.10 194 348 9.1E-37 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS00815 6911b47f1266563097888be5f137eaf9 352 SUPERFAMILY SSF55785 4 97 3.84E-10 T 11-11-2016 IPR000014 PAS domain vm_RS00815 6911b47f1266563097888be5f137eaf9 352 Gene3D G3DSA:3.30.450.20 3 109 5.3E-28 T 11-11-2016 vm_RS00815 6911b47f1266563097888be5f137eaf9 352 PRINTS PR00344 Bacterial sensor protein C-terminal signature 282 296 1.9E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS00815 6911b47f1266563097888be5f137eaf9 352 PRINTS PR00344 Bacterial sensor protein C-terminal signature 334 347 1.9E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS00815 6911b47f1266563097888be5f137eaf9 352 PRINTS PR00344 Bacterial sensor protein C-terminal signature 311 329 1.9E-11 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS00815 6911b47f1266563097888be5f137eaf9 352 Gene3D G3DSA:1.10.287.130 124 186 1.9E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS00815 6911b47f1266563097888be5f137eaf9 352 SMART SM00091 4 72 4.2E-7 T 11-11-2016 IPR000014 PAS domain vm_RS00815 6911b47f1266563097888be5f137eaf9 352 Pfam PF00989 PAS fold 7 106 1.3E-15 T 11-11-2016 IPR013767 PAS fold GO:0006355 vm_RS00815 6911b47f1266563097888be5f137eaf9 352 SMART SM00387 233 350 1.3E-32 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS00815 6911b47f1266563097888be5f137eaf9 352 SMART SM00388 129 194 9.7E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS00815 6911b47f1266563097888be5f137eaf9 352 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 234 347 3.9E-18 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS00815 6911b47f1266563097888be5f137eaf9 352 SUPERFAMILY SSF47384 125 192 5.3E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS00815 6911b47f1266563097888be5f137eaf9 352 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 7 121 1.0E-6 T 11-11-2016 IPR000014 PAS domain vm_RS00815 6911b47f1266563097888be5f137eaf9 352 SUPERFAMILY SSF55874 197 347 1.96E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS02975 c021f1fd330d8612932362aa23729997 353 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 8 144 9.0E-48 T 11-11-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 vm_RS02975 c021f1fd330d8612932362aa23729997 353 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1 348 3.4E-118 T 11-11-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 vm_RS02975 c021f1fd330d8612932362aa23729997 353 Gene3D G3DSA:3.40.50.2000 254 335 7.9E-7 T 11-11-2016 vm_RS02975 c021f1fd330d8612932362aa23729997 353 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 7 352 34.681 T 11-11-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 vm_RS02975 c021f1fd330d8612932362aa23729997 353 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 184 338 5.3E-34 T 11-11-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 vm_RS02975 c021f1fd330d8612932362aa23729997 353 SUPERFAMILY SSF53756 5 351 4.54E-123 T 11-11-2016 vm_RS02975 c021f1fd330d8612932362aa23729997 353 Gene3D G3DSA:3.40.50.2000 1 195 1.9E-75 T 11-11-2016 vm_RS05085 a8f1746776a16b4718028076cf3c04ee 404 SUPERFAMILY SSF53383 6 399 2.93E-95 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS05085 a8f1746776a16b4718028076cf3c04ee 404 Gene3D G3DSA:3.90.1150.10 280 403 1.4E-41 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS05085 a8f1746776a16b4718028076cf3c04ee 404 Gene3D G3DSA:3.40.640.10 51 279 4.8E-68 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS05085 a8f1746776a16b4718028076cf3c04ee 404 Pfam PF00155 Aminotransferase class I and II 61 390 2.8E-48 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 vm_RS15540 c0c63919a7f613e05e0c51da266401a3 201 Gene3D G3DSA:1.20.1250.20 2 58 2.4E-5 T 11-11-2016 vm_RS15540 c0c63919a7f613e05e0c51da266401a3 201 Gene3D G3DSA:1.20.1250.20 77 193 7.6E-12 T 11-11-2016 vm_RS15540 c0c63919a7f613e05e0c51da266401a3 201 SUPERFAMILY SSF103473 2 192 1.27E-23 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS15540 c0c63919a7f613e05e0c51da266401a3 201 Pfam PF07690 Major Facilitator Superfamily 1 188 2.7E-18 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 vm_RS13085 509acfa41103b653fdadaec7c5027135 394 Pfam PF04055 Radical SAM superfamily 11 181 5.2E-18 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS13085 509acfa41103b653fdadaec7c5027135 394 Pfam PF06969 HemN C-terminal domain 314 374 3.3E-10 T 11-11-2016 IPR010723 HemN, C-terminal vm_RS13085 509acfa41103b653fdadaec7c5027135 394 SUPERFAMILY SSF102114 4 386 3.01E-113 T 11-11-2016 vm_RS13085 509acfa41103b653fdadaec7c5027135 394 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 7 378 3.4E-135 T 11-11-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 vm_RS13085 509acfa41103b653fdadaec7c5027135 394 SMART SM00729 6 227 4.4E-57 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 vm_RS13085 509acfa41103b653fdadaec7c5027135 394 Gene3D G3DSA:3.80.30.20 7 241 9.7E-31 T 11-11-2016 IPR023404 Radical SAM, alpha/beta horseshoe vm_RS10415 ede4f8f7916b8a705535f65868586fe9 416 SUPERFAMILY SSF53383 6 415 1.36E-184 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS10415 ede4f8f7916b8a705535f65868586fe9 416 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 11-11-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 vm_RS10415 ede4f8f7916b8a705535f65868586fe9 416 Gene3D G3DSA:3.40.640.10 37 283 5.9E-109 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS10415 ede4f8f7916b8a705535f65868586fe9 416 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 416 52.422 T 11-11-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 vm_RS10415 ede4f8f7916b8a705535f65868586fe9 416 Pfam PF00464 Serine hydroxymethyltransferase 8 385 1.9E-183 T 11-11-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 vm_RS10415 ede4f8f7916b8a705535f65868586fe9 416 PIRSF PIRSF000412 1 415 2.6E-169 T 11-11-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 vm_RS10415 ede4f8f7916b8a705535f65868586fe9 416 Gene3D G3DSA:3.90.1150.10 284 415 1.4E-53 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS02795 0b950f6fa0c87ee3ab479a38347670b0 476 Gene3D G3DSA:3.40.50.620 340 461 5.2E-35 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS02795 0b950f6fa0c87ee3ab479a38347670b0 476 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 342 408 6.2E-18 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 vm_RS02795 0b950f6fa0c87ee3ab479a38347670b0 476 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 7 312 3.0E-125 T 11-11-2016 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 vm_RS02795 0b950f6fa0c87ee3ab479a38347670b0 476 SUPERFAMILY SSF52374 340 471 9.19E-24 T 11-11-2016 vm_RS02795 0b950f6fa0c87ee3ab479a38347670b0 476 Pfam PF01467 Cytidylyltransferase-like 345 470 5.6E-15 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 vm_RS02795 0b950f6fa0c87ee3ab479a38347670b0 476 SUPERFAMILY SSF53613 12 305 4.83E-58 T 11-11-2016 IPR029056 Ribokinase-like vm_RS02795 0b950f6fa0c87ee3ab479a38347670b0 476 Gene3D G3DSA:3.40.1190.20 13 313 4.3E-67 T 11-11-2016 IPR029056 Ribokinase-like vm_RS02795 0b950f6fa0c87ee3ab479a38347670b0 476 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 332 472 9.8E-62 T 11-11-2016 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 vm_RS02795 0b950f6fa0c87ee3ab479a38347670b0 476 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 474 42.917 T 11-11-2016 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167 vm_RS02795 0b950f6fa0c87ee3ab479a38347670b0 476 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 11-11-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 vm_RS02795 0b950f6fa0c87ee3ab479a38347670b0 476 Pfam PF00294 pfkB family carbohydrate kinase 13 302 6.4E-47 T 11-11-2016 IPR011611 Carbohydrate kinase PfkB vm_RS10445 8a0bdafdec12359ecb8ed5becdcbba08 400 Pfam PF10082 Putative beta-barrel porin 2 42 396 6.4E-32 T 11-11-2016 IPR018759 Putative beta-barrel porin 2 vm_RS06385 967c585d8730172f2b99e522540509ea 194 Pfam PF01810 LysE type translocator 17 187 2.6E-14 T 11-11-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 vm_RS13535 a2228a12e1f9ff0e5c636d32da8f3830 670 SUPERFAMILY SSF55073 233 386 3.84E-13 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS13535 a2228a12e1f9ff0e5c636d32da8f3830 670 SMART SM00267 216 386 4.1E-6 T 11-11-2016 IPR000160 GGDEF domain vm_RS13535 a2228a12e1f9ff0e5c636d32da8f3830 670 SMART SM00052 397 649 6.3E-18 T 11-11-2016 IPR001633 EAL domain vm_RS13535 a2228a12e1f9ff0e5c636d32da8f3830 670 Gene3D G3DSA:3.20.20.450 401 637 3.5E-39 T 11-11-2016 IPR001633 EAL domain vm_RS13535 a2228a12e1f9ff0e5c636d32da8f3830 670 Gene3D G3DSA:3.30.70.270 230 388 3.4E-15 T 11-11-2016 vm_RS13535 a2228a12e1f9ff0e5c636d32da8f3830 670 Pfam PF00563 EAL domain 429 636 5.1E-45 T 11-11-2016 IPR001633 EAL domain vm_RS13535 a2228a12e1f9ff0e5c636d32da8f3830 670 SUPERFAMILY SSF141868 409 637 3.53E-39 T 11-11-2016 IPR001633 EAL domain vm_RS13535 a2228a12e1f9ff0e5c636d32da8f3830 670 Pfam PF17157 Gammaproteobacterial periplasmic sensor domain 39 134 4.1E-29 T 11-11-2016 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 vm_RS13535 a2228a12e1f9ff0e5c636d32da8f3830 670 Pfam PF00990 Diguanylate cyclase, GGDEF domain 229 379 1.7E-15 T 11-11-2016 IPR000160 GGDEF domain vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 SUPERFAMILY SSF109604 50 205 7.53E-43 T 11-11-2016 vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 SUPERFAMILY SSF81271 396 462 2.83E-21 T 11-11-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 Pfam PF02824 TGS domain 403 462 1.9E-22 T 11-11-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 SUPERFAMILY SSF81301 207 380 2.45E-61 T 11-11-2016 vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 Pfam PF13328 HD domain 57 190 2.2E-37 T 11-11-2016 IPR003607 HD/PDEase domain vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 SUPERFAMILY SSF55021 661 736 1.42E-10 T 11-11-2016 vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 Gene3D G3DSA:3.30.70.260 661 734 6.8E-18 T 11-11-2016 vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 64 736 3.0E-184 T 11-11-2016 IPR004811 RelA/SpoT family GO:0015969 vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 Pfam PF13291 ACT domain 660 736 2.3E-15 T 11-11-2016 IPR002912 ACT domain GO:0008152|GO:0016597 vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 Pfam PF04607 Region found in RelA / SpoT proteins 250 359 1.2E-36 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 SMART SM00954 250 360 1.6E-63 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 Gene3D G3DSA:3.10.20.30 403 464 5.7E-25 T 11-11-2016 IPR012675 Beta-grasp domain vm_RS02705 cc1b4d267eb6c16babf4a44adf6f5b5c 738 Gene3D G3DSA:3.30.460.10 193 339 6.4E-49 T 11-11-2016 vm_RS01630 fefd70a435af2df81a0736fde46e3395 205 Pfam PF13412 Winged helix-turn-helix DNA-binding 6 46 3.4E-7 T 11-11-2016 vm_RS01630 fefd70a435af2df81a0736fde46e3395 205 Gene3D G3DSA:1.10.10.10 6 98 3.8E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS01630 fefd70a435af2df81a0736fde46e3395 205 SUPERFAMILY SSF46785 4 183 1.35E-37 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS07485 2561889d2a1184dae7299c8357bc61be 180 PIRSF PIRSF010252 1 178 4.2E-67 T 11-11-2016 IPR009809 Cell division protein ZapC vm_RS07485 2561889d2a1184dae7299c8357bc61be 180 Pfam PF07126 Cell-division protein ZapC 1 168 2.7E-61 T 11-11-2016 IPR009809 Cell division protein ZapC vm_RS07485 2561889d2a1184dae7299c8357bc61be 180 Hamap MF_00906 Cell division protein ZapC [zapC]. 1 177 36.78 T 11-11-2016 IPR009809 Cell division protein ZapC vm_RS01755 5060f43a74a62c895bf4ee0b5d71b188 297 SUPERFAMILY SSF53850 87 295 3.26E-40 T 11-11-2016 vm_RS01755 5060f43a74a62c895bf4ee0b5d71b188 297 Pfam PF03466 LysR substrate binding domain 89 293 5.8E-45 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS01755 5060f43a74a62c895bf4ee0b5d71b188 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.9E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS01755 5060f43a74a62c895bf4ee0b5d71b188 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.9E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS01755 5060f43a74a62c895bf4ee0b5d71b188 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.9E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS01755 5060f43a74a62c895bf4ee0b5d71b188 297 SUPERFAMILY SSF46785 1 85 8.82E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS01755 5060f43a74a62c895bf4ee0b5d71b188 297 Gene3D G3DSA:3.40.190.10 90 176 2.3E-18 T 11-11-2016 vm_RS01755 5060f43a74a62c895bf4ee0b5d71b188 297 Gene3D G3DSA:3.40.190.10 177 267 6.9E-30 T 11-11-2016 vm_RS01755 5060f43a74a62c895bf4ee0b5d71b188 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 8.1E-20 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS01755 5060f43a74a62c895bf4ee0b5d71b188 297 Gene3D G3DSA:1.10.10.10 1 84 4.2E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 SMART SM00636 368 815 2.9E-117 T 11-11-2016 IPR011583 Chitinase II GO:0004568|GO:0006032 vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 ProSitePatterns PS01095 Chitinases family 18 active site. 504 512 - T 11-11-2016 IPR001579 Glycoside hydrolase, chitinase active site GO:0004553|GO:0005975 KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 Gene3D G3DSA:3.20.20.80 364 663 1.5E-91 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 Gene3D G3DSA:3.20.20.80 792 819 1.5E-91 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 Gene3D G3DSA:2.10.10.20 1018 1070 1.1E-16 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 Pfam PF06483 Chitinase C 824 991 8.4E-60 T 11-11-2016 IPR009470 Chitinase, C-terminal KEGG: 00520+3.2.1.14|MetaCyc: PWY-6902 vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 Gene3D G3DSA:3.10.50.10 664 713 7.2E-15 T 11-11-2016 IPR029070 Chitinase insertion domain vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 Gene3D G3DSA:3.10.50.10 762 785 7.2E-15 T 11-11-2016 IPR029070 Chitinase insertion domain vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 Pfam PF00704 Glycosyl hydrolases family 18 369 815 3.5E-76 T 11-11-2016 IPR001223 Glycoside hydrolase family 18, catalytic domain GO:0004553|GO:0005975 vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 Pfam PF14600 Cellulose-binding domain 1033 1068 3.6E-8 T 11-11-2016 IPR032798 Endoglucanase Z, cellulose-binding domain KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 SUPERFAMILY SSF51445 361 662 8.75E-77 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 SUPERFAMILY SSF51445 787 818 8.75E-77 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 SUPERFAMILY SSF54556 662 785 4.76E-10 T 11-11-2016 IPR029070 Chitinase insertion domain vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 Gene3D G3DSA:2.60.40.1560 283 349 6.0E-5 T 11-11-2016 vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 SMART SM00495 1026 1068 2.4E-5 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS09480 7bcb47cd42591e330b0314c09490873c 1071 SUPERFAMILY SSF51055 1019 1070 1.33E-12 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS05965 cf32b37be7e5348978d2a959ac9d5d4d 810 Pfam PF07971 Glycosyl hydrolase family 92 254 800 1.4E-138 T 11-11-2016 IPR012939 Glycosyl hydrolase family 92 vm_RS05965 cf32b37be7e5348978d2a959ac9d5d4d 810 Gene3D G3DSA:2.70.98.10 31 336 7.2E-91 T 11-11-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 vm_RS05965 cf32b37be7e5348978d2a959ac9d5d4d 810 Gene3D G3DSA:1.20.1050.60 361 440 6.2E-26 T 11-11-2016 vm_RS05965 cf32b37be7e5348978d2a959ac9d5d4d 810 Gene3D G3DSA:3.30.2080.10 666 804 1.9E-58 T 11-11-2016 vm_RS05965 cf32b37be7e5348978d2a959ac9d5d4d 810 Gene3D G3DSA:1.20.1610.10 469 544 6.0E-47 T 11-11-2016 vm_RS05965 cf32b37be7e5348978d2a959ac9d5d4d 810 Gene3D G3DSA:1.20.1610.10 583 665 6.0E-47 T 11-11-2016 vm_RS05965 cf32b37be7e5348978d2a959ac9d5d4d 810 SUPERFAMILY SSF48208 276 535 1.7E-33 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 vm_RS05965 cf32b37be7e5348978d2a959ac9d5d4d 810 SUPERFAMILY SSF48208 588 784 1.7E-33 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 vm_RS05965 cf32b37be7e5348978d2a959ac9d5d4d 810 TIGRFAM TIGR01180 aman2_put: putative alpha-1,2-mannosidase 29 538 1.8E-110 T 11-11-2016 IPR005887 Alpha-1,2-mannosidase, putative vm_RS15310 8ef17be24fb43e37aef194856a60a2d5 85 Pfam PF07070 SpoOM protein 1 85 2.8E-21 T 11-11-2016 IPR009776 Sporulation stage 0, protein M vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 Gene3D G3DSA:3.40.50.300 29 117 1.3E-18 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 Gene3D G3DSA:3.40.50.300 193 237 1.3E-18 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 SUPERFAMILY SSF52540 189 231 1.85E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 SUPERFAMILY SSF52540 576 598 1.85E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 SUPERFAMILY SSF52540 374 545 1.85E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 SMART SM00491 477 606 2.1E-47 T 11-11-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 SMART SM00487 17 302 0.0033 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 Gene3D G3DSA:3.40.50.300 454 602 8.7E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 Pfam PF06733 DEAD_2 176 249 2.3E-4 T 11-11-2016 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 Pfam PF00270 DEAD/DEAH box helicase 30 82 4.3E-5 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 SUPERFAMILY SSF52540 565 602 3.38E-24 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 SUPERFAMILY SSF52540 16 109 3.38E-24 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 SUPERFAMILY SSF52540 188 245 3.38E-24 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05025 24b907baa26ac2154a71d9b6d461a4aa 646 Pfam PF13307 Helicase C-terminal domain 462 619 3.2E-35 T 11-11-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 vm_RS13070 98f2334b36dfd0838806cc2f89c74d1f 97 SUPERFAMILY SSF69786 3 95 2.22E-32 T 11-11-2016 IPR003746 Protein of unknown function DUF167 vm_RS13070 98f2334b36dfd0838806cc2f89c74d1f 97 Pfam PF02594 Uncharacterised ACR, YggU family COG1872 11 82 9.5E-25 T 11-11-2016 IPR003746 Protein of unknown function DUF167 vm_RS13070 98f2334b36dfd0838806cc2f89c74d1f 97 SMART SM01152 7 83 1.0E-37 T 11-11-2016 IPR003746 Protein of unknown function DUF167 vm_RS13070 98f2334b36dfd0838806cc2f89c74d1f 97 Hamap MF_00634 UPF0235 protein YggU [yggU]. 7 97 20.209 T 11-11-2016 IPR003746 Protein of unknown function DUF167 vm_RS13070 98f2334b36dfd0838806cc2f89c74d1f 97 TIGRFAM TIGR00251 TIGR00251: TIGR00251 family protein 7 91 7.0E-28 T 11-11-2016 IPR005228 Conserved hypothetical protein CHP00251 vm_RS13070 98f2334b36dfd0838806cc2f89c74d1f 97 Gene3D G3DSA:3.30.1200.10 3 92 3.1E-30 T 11-11-2016 IPR003746 Protein of unknown function DUF167 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 Gene3D G3DSA:1.10.460.10 495 612 3.1E-53 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 Gene3D G3DSA:1.10.460.10 160 218 3.1E-53 T 11-11-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 SMART SM00436 129 224 2.5E-33 T 11-11-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 Pfam PF01751 Toprim domain 4 135 1.4E-16 T 11-11-2016 IPR006171 Toprim domain vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 Gene3D G3DSA:3.40.50.140 3 155 3.7E-47 T 11-11-2016 IPR006171 Toprim domain vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 327 336 3.8E-26 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 408 424 3.8E-26 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 194 212 3.8E-26 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 99 112 3.8E-26 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 526 540 3.8E-26 T 11-11-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 Hamap MF_00953 DNA topoisomerase 3 [topB]. 2 647 69.667 T 11-11-2016 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 SMART SM00437 284 563 1.6E-86 T 11-11-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 Pfam PF01131 DNA topoisomerase 159 598 4.3E-116 T 11-11-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 Gene3D G3DSA:2.70.20.10 374 493 6.1E-41 T 11-11-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 Gene3D G3DSA:2.70.20.10 219 256 6.1E-41 T 11-11-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 SMART SM00493 2 125 2.9E-27 T 11-11-2016 IPR006171 Toprim domain vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 SUPERFAMILY SSF56712 3 611 1.57E-183 T 11-11-2016 IPR023405 DNA topoisomerase, type IA, core domain vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 321 336 - T 11-11-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 vm_RS04720 f4bb1597e652b311d34726ba28e5aa03 647 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 626 2.1E-237 T 11-11-2016 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 vm_RS20095 e427d3dd0875a7a0079184a62c515d73 100 Pfam PF13692 Glycosyl transferases group 1 1 98 4.1E-8 T 11-11-2016 vm_RS20095 e427d3dd0875a7a0079184a62c515d73 100 SUPERFAMILY SSF53756 2 81 1.67E-7 T 11-11-2016 vm_RS10745 ec9fb289d9b0a27314ca320fd14c4d87 41 Pfam PF00444 Ribosomal protein L36 1 40 6.8E-17 T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS10745 ec9fb289d9b0a27314ca320fd14c4d87 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 41 16.38 T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS10745 ec9fb289d9b0a27314ca320fd14c4d87 41 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 6.8E-8 T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS10745 ec9fb289d9b0a27314ca320fd14c4d87 41 ProSitePatterns PS00828 Ribosomal protein L36 signature. 14 40 - T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS10745 ec9fb289d9b0a27314ca320fd14c4d87 41 SUPERFAMILY SSF57840 1 40 1.44E-13 T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 Gene3D G3DSA:3.40.190.10 111 199 1.2E-40 T 11-11-2016 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 Gene3D G3DSA:3.40.190.10 3 110 6.3E-49 T 11-11-2016 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 SUPERFAMILY SSF54782 220 309 2.62E-28 T 11-11-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 PIRSF PIRSF001438 1 311 3.0E-121 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 SUPERFAMILY SSF53850 4 219 4.14E-86 T 11-11-2016 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 227 295 2.3E-20 T 11-11-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 1.4E-47 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 1.4E-47 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 1.4E-47 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 1.4E-47 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 1.4E-47 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 6 213 7.3E-80 T 11-11-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 11-11-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 297 1.8E-114 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 39.876 T 11-11-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00555 b10df9b1dfec5790373ae2e831e0d363 311 Gene3D G3DSA:3.30.160.40 221 305 1.9E-27 T 11-11-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS12055 b6951d995d0f561133631362625a9c22 365 Gene3D G3DSA:2.40.50.100 82 115 7.3E-13 T 11-11-2016 vm_RS12055 b6951d995d0f561133631362625a9c22 365 Gene3D G3DSA:2.40.50.100 176 209 7.3E-13 T 11-11-2016 vm_RS12055 b6951d995d0f561133631362625a9c22 365 SUPERFAMILY SSF111369 71 284 1.57E-26 T 11-11-2016 vm_RS12055 b6951d995d0f561133631362625a9c22 365 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 73 277 8.1E-23 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain vm_RS12055 b6951d995d0f561133631362625a9c22 365 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 63 358 2.9E-42 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 vm_RS04050 3e7e80719ad32ee486968c626bf25e56 286 Pfam PF13847 Methyltransferase domain 116 258 4.5E-15 T 11-11-2016 IPR025714 Methyltransferase domain vm_RS04050 3e7e80719ad32ee486968c626bf25e56 286 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 5 280 45.821 T 11-11-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 vm_RS04050 3e7e80719ad32ee486968c626bf25e56 286 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 185 191 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 vm_RS04050 3e7e80719ad32ee486968c626bf25e56 286 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 27 276 3.5E-89 T 11-11-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 vm_RS04050 3e7e80719ad32ee486968c626bf25e56 286 SUPERFAMILY SSF53335 5 280 7.63E-57 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS04050 3e7e80719ad32ee486968c626bf25e56 286 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 4 282 2.2E-76 T 11-11-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 vm_RS04050 3e7e80719ad32ee486968c626bf25e56 286 Gene3D G3DSA:1.10.8.10 4 88 7.2E-30 T 11-11-2016 vm_RS04050 3e7e80719ad32ee486968c626bf25e56 286 Gene3D G3DSA:3.40.50.150 90 279 2.7E-66 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS04415 e1410282881ca0bc29b90836036b21b6 461 Gene3D G3DSA:1.10.246.40 2 65 3.7E-26 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS04415 e1410282881ca0bc29b90836036b21b6 461 Pfam PF01609 Transposase DDE domain 294 360 2.4E-5 T 11-11-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 vm_RS04415 e1410282881ca0bc29b90836036b21b6 461 Gene3D G3DSA:1.10.740.10 348 458 9.5E-46 T 11-11-2016 IPR014737 Transposase, Tn5-like, C-terminal vm_RS04415 e1410282881ca0bc29b90836036b21b6 461 Pfam PF14706 Transposase DNA-binding 9 66 1.2E-20 T 11-11-2016 IPR014735 Transposase, Tn5-like, N-terminal vm_RS04415 e1410282881ca0bc29b90836036b21b6 461 Gene3D G3DSA:3.90.350.10 68 346 2.0E-92 T 11-11-2016 IPR014736 Transposase, Tn5-like, core vm_RS04415 e1410282881ca0bc29b90836036b21b6 461 Pfam PF02281 Transposase Tn5 dimerisation domain 361 454 1.2E-16 T 11-11-2016 IPR003201 Transposase Tn5, dimerisation vm_RS04415 e1410282881ca0bc29b90836036b21b6 461 SUPERFAMILY SSF53098 4 460 1.44E-127 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 SUPERFAMILY SSF50249 8 173 6.85E-40 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 Pfam PF17191 RecG wedge domain 14 170 3.7E-20 T 11-11-2016 IPR033454 RecG, wedge domain vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 Pfam PF00270 DEAD/DEAH box helicase 271 432 7.3E-19 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 SMART SM00490 504 588 3.6E-23 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 SMART SM00487 264 458 1.0E-30 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 Pfam PF00271 Helicase conserved C-terminal domain 479 587 1.6E-19 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 Gene3D G3DSA:3.40.50.300 255 452 5.7E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 Gene3D G3DSA:3.40.50.300 453 637 5.8E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 SUPERFAMILY SSF52540 451 653 1.77E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 Gene3D G3DSA:2.40.50.140 46 140 4.8E-31 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 28 663 2.6E-237 T 11-11-2016 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 Gene3D G3DSA:1.10.150.20 2 36 1.5E-6 T 11-11-2016 vm_RS01150 a98d9e9de70758cc6375d0e77f7a2d4c 692 SUPERFAMILY SSF52540 215 452 2.13E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00685 a5af5cd67a6140709ea9dcac1ddef422 224 SUPERFAMILY SSF52540 1 219 9.05E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00685 a5af5cd67a6140709ea9dcac1ddef422 224 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS00685 a5af5cd67a6140709ea9dcac1ddef422 224 Pfam PF00005 ABC transporter 18 165 6.6E-36 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS00685 a5af5cd67a6140709ea9dcac1ddef422 224 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 1.3E-90 T 11-11-2016 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 vm_RS00685 a5af5cd67a6140709ea9dcac1ddef422 224 SMART SM00382 27 215 1.5E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS00685 a5af5cd67a6140709ea9dcac1ddef422 224 Gene3D G3DSA:3.40.50.300 1 201 1.1E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13985 5cab817c0dcd78540f6ec10395b83dc8 233 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 8.5E-106 T 11-11-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 vm_RS13985 5cab817c0dcd78540f6ec10395b83dc8 233 Gene3D G3DSA:3.30.190.20 18 68 2.1E-47 T 11-11-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 vm_RS13985 5cab817c0dcd78540f6ec10395b83dc8 233 Gene3D G3DSA:3.30.190.20 161 226 2.1E-47 T 11-11-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 vm_RS13985 5cab817c0dcd78540f6ec10395b83dc8 233 Gene3D G3DSA:3.40.50.790 69 159 2.9E-39 T 11-11-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich vm_RS13985 5cab817c0dcd78540f6ec10395b83dc8 233 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 11-11-2016 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS13985 5cab817c0dcd78540f6ec10395b83dc8 233 Pfam PF00687 Ribosomal protein L1p/L10e family 30 219 7.1E-51 T 11-11-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein vm_RS13985 5cab817c0dcd78540f6ec10395b83dc8 233 PIRSF PIRSF002155 1 227 8.8E-78 T 11-11-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS13985 5cab817c0dcd78540f6ec10395b83dc8 233 SUPERFAMILY SSF56808 6 226 8.24E-82 T 11-11-2016 IPR023674 Ribosomal protein L1-like vm_RS13985 5cab817c0dcd78540f6ec10395b83dc8 233 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.853 T 11-11-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 vm_RS05335 ae3efd80c2fbfc30cb5e10888e9004db 103 SUPERFAMILY SSF47781 27 101 3.56E-28 T 11-11-2016 IPR010994 RuvA domain 2-like vm_RS05335 ae3efd80c2fbfc30cb5e10888e9004db 103 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 41 102 4.0E-25 T 11-11-2016 IPR004509 Competence protein ComEA, helix-hairpin-helix domain vm_RS05335 ae3efd80c2fbfc30cb5e10888e9004db 103 SMART SM00278 81 100 57.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 vm_RS05335 ae3efd80c2fbfc30cb5e10888e9004db 103 SMART SM00278 51 70 13.0 T 11-11-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 vm_RS05335 ae3efd80c2fbfc30cb5e10888e9004db 103 Gene3D G3DSA:1.10.150.280 30 103 3.1E-20 T 11-11-2016 vm_RS05335 ae3efd80c2fbfc30cb5e10888e9004db 103 Pfam PF12836 Helix-hairpin-helix motif 41 101 1.2E-21 T 11-11-2016 vm_RS10360 88b2b97c1e1bce631b6dd46375713e01 342 Gene3D G3DSA:1.20.272.20 222 336 9.7E-43 T 11-11-2016 vm_RS10360 88b2b97c1e1bce631b6dd46375713e01 342 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 213 333 5.1E-35 T 11-11-2016 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS10360 88b2b97c1e1bce631b6dd46375713e01 342 SUPERFAMILY SSF48019 211 333 3.57E-29 T 11-11-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 vm_RS10360 88b2b97c1e1bce631b6dd46375713e01 342 SUPERFAMILY SSF52540 1 208 1.24E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10360 88b2b97c1e1bce631b6dd46375713e01 342 Gene3D G3DSA:1.10.8.60 144 221 8.2E-33 T 11-11-2016 vm_RS10360 88b2b97c1e1bce631b6dd46375713e01 342 Pfam PF06144 DNA polymerase III, delta subunit 20 189 4.4E-49 T 11-11-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 vm_RS10360 88b2b97c1e1bce631b6dd46375713e01 342 Gene3D G3DSA:3.40.50.300 1 138 5.3E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10360 88b2b97c1e1bce631b6dd46375713e01 342 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 332 6.9E-107 T 11-11-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 Pfam PF00072 Response regulator receiver domain 14 122 1.1E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 Pfam PF00158 Sigma-54 interaction domain 147 312 7.4E-69 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 Gene3D G3DSA:3.40.50.2300 12 136 6.5E-35 T 11-11-2016 vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 SMART SM00382 166 309 2.0E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 SMART SM00448 11 122 8.9E-31 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 Gene3D G3DSA:1.10.10.60 414 457 5.3E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 SUPERFAMILY SSF46689 359 458 2.09E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 SUPERFAMILY SSF52540 146 389 1.08E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 Gene3D G3DSA:1.10.8.60 320 392 2.1E-20 T 11-11-2016 vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 Gene3D G3DSA:3.40.50.300 143 318 5.1E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 SUPERFAMILY SSF52172 13 190 5.12E-41 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 Pfam PF02954 Bacterial regulatory protein, Fis family 419 459 7.1E-13 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS09995 09c2eaf3d58f3fad371aa6d4a9c75097 470 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 359 368 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site vm_RS10705 e5924ceab09a93e1b1348c34054223ec 244 Pfam PF00849 RNA pseudouridylate synthase 11 170 3.7E-33 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS10705 e5924ceab09a93e1b1348c34054223ec 244 SUPERFAMILY SSF55120 2 238 2.24E-62 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS10705 e5924ceab09a93e1b1348c34054223ec 244 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 50 64 - T 11-11-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS06710 6759343f032f67bbc95011cc483efbf4 395 Pfam PF11301 Protein of unknown function (DUF3103) 41 394 1.4E-179 T 11-11-2016 IPR021452 Protein of unknown function DUF3103 vm_RS06550 39cff6e924559921b757ecad82aab38d 540 Gene3D G3DSA:3.10.105.10 293 508 2.4E-55 T 11-11-2016 vm_RS06550 39cff6e924559921b757ecad82aab38d 540 PIRSF PIRSF002741 1 539 5.6E-92 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 vm_RS06550 39cff6e924559921b757ecad82aab38d 540 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 78 456 3.4E-81 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain vm_RS06550 39cff6e924559921b757ecad82aab38d 540 Gene3D G3DSA:3.90.76.10 42 221 7.2E-41 T 11-11-2016 vm_RS06550 39cff6e924559921b757ecad82aab38d 540 SUPERFAMILY SSF53850 35 535 3.08E-130 T 11-11-2016 vm_RS16715 bc57cb3eab581ef37237436fcc119844 444 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 279 308 1.2E-45 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS16715 bc57cb3eab581ef37237436fcc119844 444 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 88 108 1.2E-45 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS16715 bc57cb3eab581ef37237436fcc119844 444 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 237 257 1.2E-45 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS16715 bc57cb3eab581ef37237436fcc119844 444 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 411 437 1.2E-45 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS16715 bc57cb3eab581ef37237436fcc119844 444 Gene3D G3DSA:1.20.1440.90 10 91 4.0E-24 T 11-11-2016 vm_RS16715 bc57cb3eab581ef37237436fcc119844 444 Pfam PF00311 Phosphoenolpyruvate carboxylase 10 441 2.2E-180 T 11-11-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS16715 bc57cb3eab581ef37237436fcc119844 444 SUPERFAMILY SSF51621 7 441 2.63E-179 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS16715 bc57cb3eab581ef37237436fcc119844 444 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 239 251 - T 11-11-2016 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 vm_RS14540 768d70bf1934594dc8328c03888806b1 282 Pfam PF01380 SIS domain 130 257 1.2E-18 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 vm_RS14540 768d70bf1934594dc8328c03888806b1 282 Gene3D G3DSA:3.40.50.10490 109 270 4.1E-37 T 11-11-2016 vm_RS14540 768d70bf1934594dc8328c03888806b1 282 SUPERFAMILY SSF53697 99 279 7.86E-37 T 11-11-2016 vm_RS14540 768d70bf1934594dc8328c03888806b1 282 Pfam PF01418 Helix-turn-helix domain, rpiR family 1 74 1.9E-21 T 11-11-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 vm_RS14540 768d70bf1934594dc8328c03888806b1 282 Gene3D G3DSA:1.10.10.10 1 78 3.5E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS14540 768d70bf1934594dc8328c03888806b1 282 SUPERFAMILY SSF46689 1 77 4.12E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS13850 1f464ea0731f894a1f3a132308af7384 154 Gene3D G3DSA:3.40.50.300 5 151 1.1E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13850 1f464ea0731f894a1f3a132308af7384 154 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 133 5.0E-42 T 11-11-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 vm_RS13850 1f464ea0731f894a1f3a132308af7384 154 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 139 2.7E-51 T 11-11-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 vm_RS13850 1f464ea0731f894a1f3a132308af7384 154 SUPERFAMILY SSF52540 29 148 1.33E-24 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05050 c512e23654a4ee240613c0c8d89510be 566 Gene3D G3DSA:2.30.38.10 380 455 2.4E-29 T 11-11-2016 vm_RS05050 c512e23654a4ee240613c0c8d89510be 566 Gene3D G3DSA:3.40.50.980 24 152 1.2E-39 T 11-11-2016 vm_RS05050 c512e23654a4ee240613c0c8d89510be 566 Gene3D G3DSA:3.40.50.980 185 216 1.2E-39 T 11-11-2016 vm_RS05050 c512e23654a4ee240613c0c8d89510be 566 ProSitePatterns PS00455 Putative AMP-binding domain signature. 211 222 - T 11-11-2016 IPR020845 AMP-binding, conserved site vm_RS05050 c512e23654a4ee240613c0c8d89510be 566 Gene3D G3DSA:3.40.50.980 217 379 3.1E-41 T 11-11-2016 vm_RS05050 c512e23654a4ee240613c0c8d89510be 566 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 544 3.8E-16 T 11-11-2016 IPR025110 AMP-binding enzyme C-terminal domain vm_RS05050 c512e23654a4ee240613c0c8d89510be 566 Pfam PF00501 AMP-binding enzyme 29 461 7.6E-106 T 11-11-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 vm_RS05050 c512e23654a4ee240613c0c8d89510be 566 SUPERFAMILY SSF56801 13 553 1.83E-146 T 11-11-2016 vm_RS05050 c512e23654a4ee240613c0c8d89510be 566 Gene3D G3DSA:3.30.300.30 456 552 1.3E-26 T 11-11-2016 vm_RS03890 cc46ad6156188a544c1d5ad689d204d2 249 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 121 1.0E-33 T 11-11-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G vm_RS03890 cc46ad6156188a544c1d5ad689d204d2 249 Pfam PF00460 Flagella basal body rod protein 8 35 3.1E-5 T 11-11-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 vm_RS03890 cc46ad6156188a544c1d5ad689d204d2 249 SUPERFAMILY SSF117143 77 207 2.75E-17 T 11-11-2016 vm_RS03890 cc46ad6156188a544c1d5ad689d204d2 249 TIGRFAM TIGR02490 flgF: flagellar basal-body rod protein FlgF 6 226 1.3E-53 T 11-11-2016 IPR012836 Flagellar basal-body rod FlgF GO:0030694|GO:0071973 vm_RS03890 cc46ad6156188a544c1d5ad689d204d2 249 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 173 242 1.0E-22 T 11-11-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain vm_RS11210 2b9877ac67e02047fa8e97fb618ddb82 244 Gene3D G3DSA:3.40.1280.10 96 243 4.3E-38 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal vm_RS11210 2b9877ac67e02047fa8e97fb618ddb82 244 SUPERFAMILY SSF55315 5 93 1.01E-11 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like vm_RS11210 2b9877ac67e02047fa8e97fb618ddb82 244 SUPERFAMILY SSF75217 97 243 2.29E-33 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases vm_RS11210 2b9877ac67e02047fa8e97fb618ddb82 244 Gene3D G3DSA:3.30.1330.30 1 92 6.2E-24 T 11-11-2016 IPR029064 50S ribosomal protein L30e-like vm_RS11210 2b9877ac67e02047fa8e97fb618ddb82 244 Pfam PF00588 SpoU rRNA Methylase family 102 236 9.3E-29 T 11-11-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 vm_RS14715 0375afeb0e2e8f262c0d9fed8e4efb83 298 Gene3D G3DSA:3.40.190.10 200 259 9.6E-11 T 11-11-2016 vm_RS14715 0375afeb0e2e8f262c0d9fed8e4efb83 298 SUPERFAMILY SSF53850 87 292 3.37E-28 T 11-11-2016 vm_RS14715 0375afeb0e2e8f262c0d9fed8e4efb83 298 Pfam PF03466 LysR substrate binding domain 86 289 3.2E-34 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS14715 0375afeb0e2e8f262c0d9fed8e4efb83 298 Gene3D G3DSA:3.40.190.10 82 199 3.7E-20 T 11-11-2016 vm_RS14715 0375afeb0e2e8f262c0d9fed8e4efb83 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.1E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS14715 0375afeb0e2e8f262c0d9fed8e4efb83 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.1E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS14715 0375afeb0e2e8f262c0d9fed8e4efb83 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.1E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS14715 0375afeb0e2e8f262c0d9fed8e4efb83 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 1.9E-18 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS14715 0375afeb0e2e8f262c0d9fed8e4efb83 298 SUPERFAMILY SSF46785 2 87 1.07E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS14715 0375afeb0e2e8f262c0d9fed8e4efb83 298 Gene3D G3DSA:1.10.10.10 2 81 7.3E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS10545 6b051e170a52d10c5ac73d12e663b905 352 Gene3D G3DSA:2.40.50.100 59 92 1.7E-16 T 11-11-2016 vm_RS10545 6b051e170a52d10c5ac73d12e663b905 352 Gene3D G3DSA:2.40.50.100 153 184 1.7E-16 T 11-11-2016 vm_RS10545 6b051e170a52d10c5ac73d12e663b905 352 SUPERFAMILY SSF111369 48 264 2.62E-40 T 11-11-2016 vm_RS10545 6b051e170a52d10c5ac73d12e663b905 352 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 258 1.3E-29 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain vm_RS10545 6b051e170a52d10c5ac73d12e663b905 352 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 34 339 4.9E-93 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 vm_RS07255 39c3f2a0b9bf8640e29bb05263c4775e 288 Gene3D G3DSA:3.30.200.20 7 91 1.1E-4 T 11-11-2016 vm_RS07255 39c3f2a0b9bf8640e29bb05263c4775e 288 Gene3D G3DSA:3.90.1200.10 105 248 5.7E-8 T 11-11-2016 vm_RS07255 39c3f2a0b9bf8640e29bb05263c4775e 288 Pfam PF03881 Fructosamine kinase 1 287 5.9E-123 T 11-11-2016 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 vm_RS07255 39c3f2a0b9bf8640e29bb05263c4775e 288 PIRSF PIRSF006221 1 288 5.1E-107 T 11-11-2016 IPR016477 Fructosamine/Ketosamine-3-kinase Reactome: R-HSA-163841 vm_RS07255 39c3f2a0b9bf8640e29bb05263c4775e 288 SUPERFAMILY SSF56112 14 281 7.77E-40 T 11-11-2016 IPR011009 Protein kinase-like domain vm_RS09610 8487f06975b0bb473166c0c4d660fcfe 305 SUPERFAMILY SSF55729 106 298 4.59E-61 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS09610 8487f06975b0bb473166c0c4d660fcfe 305 SMART SM01006 137 184 3.1E-18 T 11-11-2016 IPR019432 Siderophore biosynthesis protein, conserved domain vm_RS09610 8487f06975b0bb473166c0c4d660fcfe 305 Pfam PF13523 Acetyltransferase (GNAT) domain 141 284 3.4E-51 T 11-11-2016 vm_RS09610 8487f06975b0bb473166c0c4d660fcfe 305 Gene3D G3DSA:3.40.630.30 114 303 3.3E-67 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS12410 a43af74a10cdeb9eddbce21e7e8c0fad 596 Gene3D G3DSA:3.20.20.70 2 282 7.3E-116 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS12410 a43af74a10cdeb9eddbce21e7e8c0fad 596 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 552 569 - T 11-11-2016 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS12410 a43af74a10cdeb9eddbce21e7e8c0fad 596 SUPERFAMILY SSF89000 297 457 1.22E-50 T 11-11-2016 vm_RS12410 a43af74a10cdeb9eddbce21e7e8c0fad 596 Pfam PF00364 Biotin-requiring enzyme 530 594 7.7E-17 T 11-11-2016 IPR000089 Biotin/lipoyl attachment vm_RS12410 a43af74a10cdeb9eddbce21e7e8c0fad 596 Pfam PF02436 Conserved carboxylase domain 292 494 2.3E-58 T 11-11-2016 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 vm_RS12410 a43af74a10cdeb9eddbce21e7e8c0fad 596 SUPERFAMILY SSF51569 1 300 3.11E-89 T 11-11-2016 vm_RS12410 a43af74a10cdeb9eddbce21e7e8c0fad 596 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 7 591 8.9E-270 T 11-11-2016 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 vm_RS12410 a43af74a10cdeb9eddbce21e7e8c0fad 596 SUPERFAMILY SSF51230 520 595 9.68E-21 T 11-11-2016 IPR011053 Single hybrid motif vm_RS12410 a43af74a10cdeb9eddbce21e7e8c0fad 596 Gene3D G3DSA:2.40.50.100 524 595 8.1E-25 T 11-11-2016 vm_RS12410 a43af74a10cdeb9eddbce21e7e8c0fad 596 Pfam PF00682 HMGL-like 6 270 4.5E-60 T 11-11-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 vm_RS10710 c53e484d3c8d69bdf3da23aa3ea0b956 103 PIRSF PIRSF006257 1 103 4.5E-37 T 11-11-2016 IPR007384 Protein of unknown function UCP006257 vm_RS10710 c53e484d3c8d69bdf3da23aa3ea0b956 103 Pfam PF04287 tRNA pseudouridine synthase C 7 100 2.4E-30 T 11-11-2016 IPR023376 YqcC-like domain vm_RS10710 c53e484d3c8d69bdf3da23aa3ea0b956 103 Gene3D G3DSA:1.20.1440.40 4 102 3.9E-33 T 11-11-2016 IPR023376 YqcC-like domain vm_RS10710 c53e484d3c8d69bdf3da23aa3ea0b956 103 SUPERFAMILY SSF158452 2 102 1.1E-31 T 11-11-2016 IPR023376 YqcC-like domain vm_RS06420 3de5501ff5e3011e831f18cf08606587 761 SUPERFAMILY SSF51726 396 757 2.62E-112 T 11-11-2016 vm_RS06420 3de5501ff5e3011e831f18cf08606587 761 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 431 753 1.8E-149 T 11-11-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 vm_RS06420 3de5501ff5e3011e831f18cf08606587 761 Gene3D G3DSA:3.20.20.210 3 386 8.7E-146 T 11-11-2016 vm_RS06420 3de5501ff5e3011e831f18cf08606587 761 PIRSF PIRSF000382 1 761 0.0 T 11-11-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 vm_RS06420 3de5501ff5e3011e831f18cf08606587 761 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 4 314 1.1E-118 T 11-11-2016 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 vm_RS06420 3de5501ff5e3011e831f18cf08606587 761 SUPERFAMILY SSF51726 4 393 3.66E-106 T 11-11-2016 vm_RS06420 3de5501ff5e3011e831f18cf08606587 761 Gene3D G3DSA:3.20.20.210 393 758 2.2E-127 T 11-11-2016 vm_RS06420 3de5501ff5e3011e831f18cf08606587 761 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 2 758 35.755 T 11-11-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 vm_RS06420 3de5501ff5e3011e831f18cf08606587 761 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 7 757 0.0 T 11-11-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 653 671 1.3E-28 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 608 626 1.3E-28 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 682 700 1.3E-28 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 715 729 1.3E-28 T 11-11-2016 IPR001270 ClpA/B family GO:0005524 vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 SUPERFAMILY SSF52540 176 524 4.48E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 SUPERFAMILY SSF52540 553 841 1.98E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 Gene3D G3DSA:1.10.8.60 785 867 2.8E-13 T 11-11-2016 vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 774 846 1.3E-13 T 11-11-2016 IPR019489 Clp ATPase, C-terminal vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 220 351 1.9E-12 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 SUPERFAMILY SSF81923 12 121 4.32E-11 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 Gene3D G3DSA:1.10.8.60 361 445 6.7E-28 T 11-11-2016 vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 SMART SM00382 604 756 2.3E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 SMART SM00382 215 360 5.3E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 Pfam PF07724 AAA domain (Cdc48 subfamily) 603 768 7.0E-38 T 11-11-2016 IPR003959 ATPase, AAA-type, core GO:0005524 vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 SMART SM01086 774 864 2.5E-9 T 11-11-2016 IPR019489 Clp ATPase, C-terminal vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 Gene3D G3DSA:3.40.50.300 558 784 9.4E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 Gene3D G3DSA:3.40.50.300 177 359 2.5E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 13 858 0.0 T 11-11-2016 IPR017729 Type VI secretion system, ATPase ClpV1 vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 Gene3D G3DSA:1.10.1780.10 11 121 3.4E-10 T 11-11-2016 IPR004176 Clp, N-terminal GO:0019538 vm_RS12770 b86213f51716c42dadefbea5dd03eb8f 870 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 311 323 - T 11-11-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 vm_RS09015 2e5e85f090d01a0935068878163af913 192 ProSitePatterns PS00603 Thymidine kinase cellular-type signature. 173 186 - T 11-11-2016 IPR020633 Thymidine kinase, conserved site GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 vm_RS09015 2e5e85f090d01a0935068878163af913 192 SUPERFAMILY SSF52540 2 141 2.98E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09015 2e5e85f090d01a0935068878163af913 192 SUPERFAMILY SSF57716 142 189 2.23E-16 T 11-11-2016 vm_RS09015 2e5e85f090d01a0935068878163af913 192 Hamap MF_00124 Thymidine kinase [tdk]. 1 189 34.882 T 11-11-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 vm_RS09015 2e5e85f090d01a0935068878163af913 192 PIRSF PIRSF035805 1 191 2.1E-56 T 11-11-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 vm_RS09015 2e5e85f090d01a0935068878163af913 192 Pfam PF00265 Thymidine kinase 2 186 1.3E-58 T 11-11-2016 IPR001267 Thymidine kinase GO:0004797|GO:0005524 KEGG: 00240+2.7.1.21|KEGG: 00983+2.7.1.21|MetaCyc: PWY-7199|Reactome: R-HSA-73614 vm_RS09015 2e5e85f090d01a0935068878163af913 192 Gene3D G3DSA:3.30.60.20 142 189 8.9E-19 T 11-11-2016 vm_RS12180 e4ab136327b28684045937b5e80e72ab 763 Pfam PF01734 Patatin-like phospholipase 36 227 1.5E-29 T 11-11-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 vm_RS12180 e4ab136327b28684045937b5e80e72ab 763 Pfam PF07244 Surface antigen variable number repeat 347 417 2.0E-7 T 11-11-2016 IPR010827 Surface antigen variable number GO:0019867 vm_RS12180 e4ab136327b28684045937b5e80e72ab 763 SUPERFAMILY SSF52151 133 324 3.4E-57 T 11-11-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 vm_RS12180 e4ab136327b28684045937b5e80e72ab 763 SUPERFAMILY SSF52151 30 103 3.4E-57 T 11-11-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 vm_RS12180 e4ab136327b28684045937b5e80e72ab 763 Gene3D G3DSA:3.40.1090.10 31 230 2.0E-14 T 11-11-2016 vm_RS12655 51b901cd15824cbec09c97a65a466ad3 329 Gene3D G3DSA:3.40.50.300 26 255 6.2E-19 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12655 51b901cd15824cbec09c97a65a466ad3 329 SUPERFAMILY SSF52540 26 174 1.69E-19 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12655 51b901cd15824cbec09c97a65a466ad3 329 Pfam PF01926 50S ribosome-binding GTPase 42 134 4.9E-9 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 Pfam PF06723 MreB/Mbl protein 11 338 1.3E-148 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 SUPERFAMILY SSF53067 9 152 1.11E-37 T 11-11-2016 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 52 70 1.6E-63 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 136 155 1.6E-63 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 191 211 1.6E-63 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 304 330 1.6E-63 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 72 95 1.6E-63 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 Gene3D G3DSA:3.30.420.40 9 163 2.5E-46 T 11-11-2016 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 SUPERFAMILY SSF53067 154 340 8.26E-51 T 11-11-2016 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 Gene3D G3DSA:3.30.420.40 267 321 3.9E-35 T 11-11-2016 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 Gene3D G3DSA:3.30.420.40 164 190 3.9E-35 T 11-11-2016 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 Gene3D G3DSA:3.90.640.10 191 263 4.2E-31 T 11-11-2016 vm_RS13450 0a5b414e013b72295fc22dff2198e295 347 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 339 2.7E-164 T 11-11-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 vm_RS02770 c1821f2028ecf627f3c9164c395358c3 226 Pfam PF01865 Protein of unknown function DUF47 7 223 1.0E-65 T 11-11-2016 IPR018445 Putative phosphate transport regulator vm_RS02770 c1821f2028ecf627f3c9164c395358c3 226 TIGRFAM TIGR00153 TIGR00153: TIGR00153 family protein 4 225 1.2E-68 T 11-11-2016 IPR002727 Protein of unknown function DUF47 vm_RS02770 c1821f2028ecf627f3c9164c395358c3 226 SUPERFAMILY SSF109755 31 216 1.92E-15 T 11-11-2016 vm_RS10440 8484bf782af3962132b8f849084244ef 174 Pfam PF02563 Polysaccharide biosynthesis/export protein 21 95 6.0E-20 T 11-11-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 vm_RS10440 8484bf782af3962132b8f849084244ef 174 Pfam PF10531 SLBB domain 101 142 1.1E-9 T 11-11-2016 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 vm_RS10440 8484bf782af3962132b8f849084244ef 174 Gene3D G3DSA:3.30.1950.10 29 95 2.2E-19 T 11-11-2016 vm_RS10440 8484bf782af3962132b8f849084244ef 174 Gene3D G3DSA:3.10.560.10 96 170 9.6E-11 T 11-11-2016 vm_RS03225 c5a6a561f96b6728a16505c809134e7f 780 SUPERFAMILY SSF141371 464 545 2.16E-7 T 11-11-2016 vm_RS03225 c5a6a561f96b6728a16505c809134e7f 780 Pfam PF07238 PilZ domain 144 228 2.6E-7 T 11-11-2016 IPR009875 PilZ domain GO:0035438 vm_RS03225 c5a6a561f96b6728a16505c809134e7f 780 Pfam PF07238 PilZ domain 469 551 1.4E-10 T 11-11-2016 IPR009875 PilZ domain GO:0035438 vm_RS05650 e930e8bbbf2b3cf64fb4377ccbc1f977 176 Pfam PF09835 Uncharacterized protein conserved in bacteria (DUF2062) 22 164 4.1E-47 T 11-11-2016 IPR018639 Domain of unknown function DUF2062 vm_RS02315 793eb6cc6d87b32175a0a1460fcb30b4 324 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 46 314 2.2E-116 T 11-11-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 vm_RS02315 793eb6cc6d87b32175a0a1460fcb30b4 324 Pfam PF01380 SIS domain 42 173 1.6E-32 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 vm_RS02315 793eb6cc6d87b32175a0a1460fcb30b4 324 Gene3D G3DSA:3.40.50.10490 10 192 1.0E-53 T 11-11-2016 vm_RS02315 793eb6cc6d87b32175a0a1460fcb30b4 324 PIRSF PIRSF004692 1 324 1.5E-131 T 11-11-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 vm_RS02315 793eb6cc6d87b32175a0a1460fcb30b4 324 SMART SM00116 276 323 0.051 T 11-11-2016 IPR000644 CBS domain vm_RS02315 793eb6cc6d87b32175a0a1460fcb30b4 324 SMART SM00116 211 259 0.42 T 11-11-2016 IPR000644 CBS domain vm_RS02315 793eb6cc6d87b32175a0a1460fcb30b4 324 Pfam PF00571 CBS domain 204 259 1.2E-5 T 11-11-2016 IPR000644 CBS domain vm_RS02315 793eb6cc6d87b32175a0a1460fcb30b4 324 Pfam PF00571 CBS domain 270 321 1.0E-6 T 11-11-2016 IPR000644 CBS domain vm_RS02315 793eb6cc6d87b32175a0a1460fcb30b4 324 Gene3D G3DSA:3.10.580.10 193 321 1.1E-38 T 11-11-2016 vm_RS02315 793eb6cc6d87b32175a0a1460fcb30b4 324 SUPERFAMILY SSF53697 7 320 2.67E-69 T 11-11-2016 vm_RS11300 1044e72e3d950ec88cb56dde85b7745f 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 1.1E-17 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11300 1044e72e3d950ec88cb56dde85b7745f 299 SUPERFAMILY SSF53850 82 297 7.78E-29 T 11-11-2016 vm_RS11300 1044e72e3d950ec88cb56dde85b7745f 299 SUPERFAMILY SSF46785 9 113 1.36E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11300 1044e72e3d950ec88cb56dde85b7745f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 1.5E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11300 1044e72e3d950ec88cb56dde85b7745f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 1.5E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11300 1044e72e3d950ec88cb56dde85b7745f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 1.5E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11300 1044e72e3d950ec88cb56dde85b7745f 299 Pfam PF03466 LysR substrate binding domain 91 295 3.3E-27 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS11300 1044e72e3d950ec88cb56dde85b7745f 299 Gene3D G3DSA:1.10.10.10 7 84 2.4E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11300 1044e72e3d950ec88cb56dde85b7745f 299 Gene3D G3DSA:3.40.190.10 94 197 4.2E-26 T 11-11-2016 vm_RS02375 96f91f7ae90afe74cd5ea70580b7a6d7 155 Hamap MF_00002 Aspartate carbamoyltransferase regulatory chain [pyrI]. 4 152 33.475 T 11-11-2016 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 vm_RS02375 96f91f7ae90afe74cd5ea70580b7a6d7 155 SUPERFAMILY SSF54893 2 100 1.7E-35 T 11-11-2016 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal vm_RS02375 96f91f7ae90afe74cd5ea70580b7a6d7 155 Gene3D G3DSA:2.30.30.20 101 152 1.6E-22 T 11-11-2016 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal vm_RS02375 96f91f7ae90afe74cd5ea70580b7a6d7 155 Pfam PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain 7 97 1.7E-30 T 11-11-2016 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal vm_RS02375 96f91f7ae90afe74cd5ea70580b7a6d7 155 TIGRFAM TIGR00240 ATCase_reg: aspartate carbamoyltransferase, regulatory subunit 5 150 2.2E-62 T 11-11-2016 IPR002801 Aspartate transcarbamylase regulatory subunit GO:0006207|GO:0009347 vm_RS02375 96f91f7ae90afe74cd5ea70580b7a6d7 155 Gene3D G3DSA:3.30.70.140 1 98 1.3E-36 T 11-11-2016 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal vm_RS02375 96f91f7ae90afe74cd5ea70580b7a6d7 155 ProDom PD006194 REGULATORY ASPARTATE CARBAMOYLTRANSFERASE CHAIN METAL-BINDING ZINC PYRIMIDINE BIOSYNTHESIS SUBUNIT TRANSFERASE 9 99 2.0E-46 T 11-11-2016 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal vm_RS02375 96f91f7ae90afe74cd5ea70580b7a6d7 155 SUPERFAMILY SSF57825 101 152 2.35E-15 T 11-11-2016 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal vm_RS02375 96f91f7ae90afe74cd5ea70580b7a6d7 155 Pfam PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain 102 149 1.3E-18 T 11-11-2016 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal vm_RS02965 cf7ccf51913b36f994d2649fbb24b7f6 440 Gene3D G3DSA:3.40.50.720 8 95 3.6E-19 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS02965 cf7ccf51913b36f994d2649fbb24b7f6 440 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 8 439 33.503 T 11-11-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS02965 cf7ccf51913b36f994d2649fbb24b7f6 440 Pfam PF08245 Mur ligase middle domain 113 282 3.3E-32 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02965 cf7ccf51913b36f994d2649fbb24b7f6 440 Gene3D G3DSA:3.90.190.20 304 435 3.6E-40 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02965 cf7ccf51913b36f994d2649fbb24b7f6 440 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 9 437 3.9E-142 T 11-11-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS02965 cf7ccf51913b36f994d2649fbb24b7f6 440 Gene3D G3DSA:3.40.1190.10 97 302 2.4E-62 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02965 cf7ccf51913b36f994d2649fbb24b7f6 440 SUPERFAMILY SSF53244 302 439 3.11E-43 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02965 cf7ccf51913b36f994d2649fbb24b7f6 440 Pfam PF02875 Mur ligase family, glutamate ligase domain 305 364 9.0E-6 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS02965 cf7ccf51913b36f994d2649fbb24b7f6 440 SUPERFAMILY SSF53623 98 300 1.09E-54 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS02965 cf7ccf51913b36f994d2649fbb24b7f6 440 SUPERFAMILY SSF51984 8 97 6.8E-17 T 11-11-2016 vm_RS00435 fa586c10ab024efaffe685b311488fcb 270 SUPERFAMILY SSF53335 18 252 1.61E-34 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS00435 fa586c10ab024efaffe685b311488fcb 270 PIRSF PIRSF028177 3 270 3.8E-91 T 11-11-2016 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP GO:0017000|GO:1901106 vm_RS00435 fa586c10ab024efaffe685b311488fcb 270 Pfam PF04072 Leucine carboxyl methyltransferase 70 128 6.1E-5 T 11-11-2016 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp GO:0008168|GO:0032259 vm_RS00435 fa586c10ab024efaffe685b311488fcb 270 Gene3D G3DSA:3.40.50.150 18 252 1.8E-29 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS13190 066e6726473ffe088f354418a81bf230 272 Gene3D G3DSA:1.10.8.100 200 263 5.9E-24 T 11-11-2016 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201 vm_RS13190 066e6726473ffe088f354418a81bf230 272 Gene3D G3DSA:3.40.50.150 8 197 1.8E-68 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS13190 066e6726473ffe088f354418a81bf230 272 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 10 263 1.5E-86 T 11-11-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 vm_RS13190 066e6726473ffe088f354418a81bf230 272 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 41 68 - T 11-11-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 vm_RS13190 066e6726473ffe088f354418a81bf230 272 SMART SM00650 25 197 1.9E-89 T 11-11-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 vm_RS13190 066e6726473ffe088f354418a81bf230 272 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 9 264 55.412 T 11-11-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 vm_RS13190 066e6726473ffe088f354418a81bf230 272 Pfam PF00398 Ribosomal RNA adenine dimethylase 9 263 4.2E-77 T 11-11-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm vm_RS13190 066e6726473ffe088f354418a81bf230 272 SUPERFAMILY SSF53335 8 265 4.05E-80 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS04530 12e53d89adfd1c1599c1e3139380eeb1 262 Pfam PF00005 ABC transporter 20 148 1.1E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS04530 12e53d89adfd1c1599c1e3139380eeb1 262 Gene3D G3DSA:3.40.50.300 3 224 2.9E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04530 12e53d89adfd1c1599c1e3139380eeb1 262 SUPERFAMILY SSF52540 3 230 1.1E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04530 12e53d89adfd1c1599c1e3139380eeb1 262 SMART SM00382 29 198 9.4E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 SUPERFAMILY SSF46626 55 78 2.91E-30 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 SUPERFAMILY SSF46626 147 240 2.91E-30 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 39 83 1.2E-23 T 11-11-2016 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 243 317 7.1E-10 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 156 229 7.7E-14 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 PRINTS PR00605 Class IC cytochrome C signature 295 317 1.4E-5 T 11-11-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 PRINTS PR00605 Class IC cytochrome C signature 166 177 1.4E-5 T 11-11-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 Gene3D G3DSA:1.10.760.10 151 246 1.6E-33 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 Gene3D G3DSA:1.10.760.10 60 82 1.6E-33 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 Gene3D G3DSA:1.10.760.10 247 324 9.9E-26 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 PIRSF PIRSF000006 1 324 2.3E-107 T 11-11-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 113 323 2.4E-57 T 11-11-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III vm_RS07570 937df83257f473d8ccce2aa794108ccd 326 SUPERFAMILY SSF46626 240 322 5.91E-22 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS08410 54606be9c5f58f428ba8edc8a97efb75 443 TIGRFAM TIGR00410 lacE: PTS system, lactose/cellobiose family IIC component 16 425 2.6E-112 T 11-11-2016 IPR004501 Phosphotransferase system, EIIC component, type 3 GO:0008982|GO:0009401|GO:0016021 vm_RS08410 54606be9c5f58f428ba8edc8a97efb75 443 PIRSF PIRSF006351 4 435 4.0E-146 T 11-11-2016 IPR004796 Phosphotransferase system, cellobiose-type IIC component GO:0008982|GO:0009401|GO:0016021 vm_RS08410 54606be9c5f58f428ba8edc8a97efb75 443 Pfam PF02378 Phosphotransferase system, EIIC 32 351 9.9E-65 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 vm_RS09370 b9782e632a3747b501323e07decf6a18 315 Gene3D G3DSA:3.40.30.10 31 166 1.8E-20 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS09370 b9782e632a3747b501323e07decf6a18 315 SUPERFAMILY SSF47616 164 312 5.15E-39 T 11-11-2016 IPR010987 Glutathione S-transferase, C-terminal-like vm_RS09370 b9782e632a3747b501323e07decf6a18 315 SUPERFAMILY SSF52833 31 150 4.03E-16 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS09370 b9782e632a3747b501323e07decf6a18 315 Pfam PF13410 Glutathione S-transferase, C-terminal domain 192 263 1.7E-13 T 11-11-2016 vm_RS09370 b9782e632a3747b501323e07decf6a18 315 Pfam PF13409 Glutathione S-transferase, N-terminal domain 56 146 7.4E-22 T 11-11-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 vm_RS09370 b9782e632a3747b501323e07decf6a18 315 Gene3D G3DSA:1.20.1050.10 167 276 1.2E-27 T 11-11-2016 IPR010987 Glutathione S-transferase, C-terminal-like vm_RS09370 b9782e632a3747b501323e07decf6a18 315 PIRSF PIRSF015753 5 312 5.8E-136 T 11-11-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 vm_RS03325 2d0b581085c1204cf6678820765b8c59 322 Pfam PF03595 Voltage-dependent anion channel 19 308 1.3E-30 T 11-11-2016 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 vm_RS08835 517c1d5f3ce50cd8174e9e0338925571 338 Gene3D G3DSA:3.40.800.10 8 333 5.2E-116 T 11-11-2016 IPR023696 Ureohydrolase domain vm_RS08835 517c1d5f3ce50cd8174e9e0338925571 338 PRINTS PR00116 Arginase signature 125 140 9.3E-5 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 vm_RS08835 517c1d5f3ce50cd8174e9e0338925571 338 PRINTS PR00116 Arginase signature 251 280 9.3E-5 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 vm_RS08835 517c1d5f3ce50cd8174e9e0338925571 338 TIGRFAM TIGR01227 hutG: formimidoylglutamase 13 326 5.0E-133 T 11-11-2016 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 vm_RS08835 517c1d5f3ce50cd8174e9e0338925571 338 PIRSF PIRSF036979 27 332 2.6E-26 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 vm_RS08835 517c1d5f3ce50cd8174e9e0338925571 338 Pfam PF00491 Arginase family 46 324 7.6E-63 T 11-11-2016 IPR006035 Ureohydrolase GO:0046872 vm_RS08835 517c1d5f3ce50cd8174e9e0338925571 338 ProSitePatterns PS01053 Arginase family signature. 254 275 - T 11-11-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 vm_RS08835 517c1d5f3ce50cd8174e9e0338925571 338 SUPERFAMILY SSF52768 13 332 1.33E-87 T 11-11-2016 vm_RS08835 517c1d5f3ce50cd8174e9e0338925571 338 Hamap MF_00737 Formimidoylglutamase [hutG]. 8 326 44.066 T 11-11-2016 IPR005923 Formiminoglutamase GO:0019556|GO:0050415 KEGG: 00340+3.5.3.8 vm_RS03895 b52daad429c6428bf861308eec9400b0 262 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 184 260 8.4E-24 T 11-11-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain vm_RS03895 b52daad429c6428bf861308eec9400b0 262 SUPERFAMILY SSF117143 92 223 3.53E-36 T 11-11-2016 vm_RS03895 b52daad429c6428bf861308eec9400b0 262 Pfam PF00460 Flagella basal body rod protein 5 35 6.8E-11 T 11-11-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 vm_RS03895 b52daad429c6428bf861308eec9400b0 262 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 261 1.2E-116 T 11-11-2016 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 vm_RS03895 b52daad429c6428bf861308eec9400b0 262 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 11-11-2016 IPR019776 Flagellar basal body rod protein, conserved site vm_RS03895 b52daad429c6428bf861308eec9400b0 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 147 244 3.0E-30 T 11-11-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G vm_RS03895 b52daad429c6428bf861308eec9400b0 262 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 137 6.8E-40 T 11-11-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G vm_RS01775 efcca3adb390fc381cbd2a45a03d08d7 196 PIRSF PIRSF016482 1 196 1.8E-82 T 11-11-2016 IPR007445 Pilus assembly protein, PilO vm_RS01775 efcca3adb390fc381cbd2a45a03d08d7 196 Gene3D G3DSA:3.30.70.60 92 195 4.4E-32 T 11-11-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 vm_RS01775 efcca3adb390fc381cbd2a45a03d08d7 196 Pfam PF04350 Pilus assembly protein, PilO 49 189 1.3E-46 T 11-11-2016 IPR007445 Pilus assembly protein, PilO vm_RS14785 22039d9b8baff32e125d6c7274c322ff 174 SUPERFAMILY SSF52218 2 171 3.88E-30 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS14785 22039d9b8baff32e125d6c7274c322ff 174 Gene3D G3DSA:3.40.50.360 105 171 1.0E-22 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS14785 22039d9b8baff32e125d6c7274c322ff 174 Gene3D G3DSA:3.40.50.360 2 71 1.0E-22 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS14785 22039d9b8baff32e125d6c7274c322ff 174 Pfam PF12724 Flavodoxin domain 4 152 3.5E-49 T 11-11-2016 IPR026816 Flavodoxin domain vm_RS06235 0bc8baf1b1381dbdcc489c10a64922bd 198 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 145 195 4.5E-8 T 11-11-2016 vm_RS06235 0bc8baf1b1381dbdcc489c10a64922bd 198 Gene3D G3DSA:1.10.10.60 4 58 2.6E-19 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS06235 0bc8baf1b1381dbdcc489c10a64922bd 198 SUPERFAMILY SSF48498 80 189 1.91E-6 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal vm_RS06235 0bc8baf1b1381dbdcc489c10a64922bd 198 SUPERFAMILY SSF46689 4 66 1.05E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS06235 0bc8baf1b1381dbdcc489c10a64922bd 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 6.7E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS06235 0bc8baf1b1381dbdcc489c10a64922bd 198 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 6.7E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS06235 0bc8baf1b1381dbdcc489c10a64922bd 198 Gene3D G3DSA:1.10.357.10 65 197 3.4E-42 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 vm_RS06235 0bc8baf1b1381dbdcc489c10a64922bd 198 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 57 1.1E-16 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS01185 5c5faa08e7b6a8a4a8477c2800a1ec8a 145 Gene3D G3DSA:2.10.109.10 11 143 3.5E-28 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain vm_RS01185 5c5faa08e7b6a8a4a8477c2800a1ec8a 145 SUPERFAMILY SSF51306 9 140 7.33E-28 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C vm_RS01185 5c5faa08e7b6a8a4a8477c2800a1ec8a 145 Pfam PF00717 Peptidase S24-like 59 124 5.2E-13 T 11-11-2016 IPR019759 Peptidase S24/S26A/S26B vm_RS12110 6bdf81f7d4ada5d3b30e9f3ff3d1ab4d 327 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 6.1E-18 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 vm_RS12110 6bdf81f7d4ada5d3b30e9f3ff3d1ab4d 327 SMART SM00382 34 231 1.3E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS12110 6bdf81f7d4ada5d3b30e9f3ff3d1ab4d 327 Pfam PF00005 ABC transporter 26 181 2.1E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS12110 6bdf81f7d4ada5d3b30e9f3ff3d1ab4d 327 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS12110 6bdf81f7d4ada5d3b30e9f3ff3d1ab4d 327 Gene3D G3DSA:3.40.50.300 4 253 9.7E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12110 6bdf81f7d4ada5d3b30e9f3ff3d1ab4d 327 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 317 5.2E-22 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 vm_RS12110 6bdf81f7d4ada5d3b30e9f3ff3d1ab4d 327 SUPERFAMILY SSF52540 5 252 1.62E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07275 5229481c0bfe6f128f68d4fcd3d48a73 263 Pfam PF04116 Fatty acid hydroxylase superfamily 89 225 3.8E-27 T 11-11-2016 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 vm_RS08450 1e89af70911b726f2cbee646d94ddc9f 179 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 161 3.4E-28 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component vm_RS12790 cde82a9392b1dc90acc9c1a17147b6d5 452 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 37 443 3.7E-110 T 11-11-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 PRINTS PR00481 Cytosol aminopeptidase signature 264 281 1.5E-54 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 PRINTS PR00481 Cytosol aminopeptidase signature 286 307 1.5E-54 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 PRINTS PR00481 Cytosol aminopeptidase signature 345 365 1.5E-54 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 PRINTS PR00481 Cytosol aminopeptidase signature 323 344 1.5E-54 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 PRINTS PR00481 Cytosol aminopeptidase signature 373 388 1.5E-54 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 Gene3D G3DSA:3.40.630.10 171 495 3.2E-139 T 11-11-2016 vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 497 40.694 T 11-11-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 147 5.7E-34 T 11-11-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 SUPERFAMILY SSF53187 180 495 1.98E-125 T 11-11-2016 vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 187 489 3.2E-119 T 11-11-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 Gene3D G3DSA:3.40.220.10 1 161 9.3E-68 T 11-11-2016 vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 349 356 - T 11-11-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 vm_RS02435 b348f1a0da88752505f605d6a658f61a 503 SUPERFAMILY SSF52949 1 184 3.53E-51 T 11-11-2016 vm_RS13975 96f6fb72f99902def69bcb8b56d5963b 122 SUPERFAMILY SSF48300 4 58 4.05E-16 T 11-11-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13975 96f6fb72f99902def69bcb8b56d5963b 122 Gene3D G3DSA:1.20.5.710 2 51 2.1E-23 T 11-11-2016 vm_RS13975 96f6fb72f99902def69bcb8b56d5963b 122 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 58 122 1.0E-12 T 11-11-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13975 96f6fb72f99902def69bcb8b56d5963b 122 Gene3D G3DSA:3.30.1390.10 52 122 7.7E-33 T 11-11-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like vm_RS13975 96f6fb72f99902def69bcb8b56d5963b 122 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 50 1.7E-17 T 11-11-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13975 96f6fb72f99902def69bcb8b56d5963b 122 SUPERFAMILY SSF54736 51 122 2.62E-24 T 11-11-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like vm_RS13975 96f6fb72f99902def69bcb8b56d5963b 122 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 122 25.108 T 11-11-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13975 96f6fb72f99902def69bcb8b56d5963b 122 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 122 1.2E-47 T 11-11-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13975 96f6fb72f99902def69bcb8b56d5963b 122 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 56 122 3.9E-30 T 11-11-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS07285 216d25bb370c5cf947b7e29b08c7f0b7 302 Gene3D G3DSA:3.30.420.40 1 132 6.6E-38 T 11-11-2016 vm_RS07285 216d25bb370c5cf947b7e29b08c7f0b7 302 Gene3D G3DSA:3.30.420.40 133 280 5.8E-44 T 11-11-2016 vm_RS07285 216d25bb370c5cf947b7e29b08c7f0b7 302 SUPERFAMILY SSF53067 1 299 3.41E-57 T 11-11-2016 vm_RS07285 216d25bb370c5cf947b7e29b08c7f0b7 302 ProSitePatterns PS01125 ROK family signature. 130 157 - T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 vm_RS07285 216d25bb370c5cf947b7e29b08c7f0b7 302 Hamap MF_01271 N-acetyl-D-glucosamine kinase [nagK]. 1 302 63.676 T 11-11-2016 IPR023505 N-acetyl-D-glucosamine kinase GO:0045127 KEGG: 00520+2.7.1.59|MetaCyc: PWY-6517|MetaCyc: PWY-6906 vm_RS07285 216d25bb370c5cf947b7e29b08c7f0b7 302 Pfam PF00480 ROK family 2 300 8.3E-74 T 11-11-2016 IPR000600 ROK family Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 vm_RS06730 68acdf4fbcd59b28f9281482d446090c 123 Pfam PF12614 Ribosome recycling factor 2 120 1.4E-52 T 11-11-2016 IPR022253 Ribosome recycling factor. bacterial vm_RS09260 a477a75ffad9b3e12a05a58d6424c901 242 Gene3D G3DSA:3.40.50.720 2 202 2.3E-44 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS09260 a477a75ffad9b3e12a05a58d6424c901 242 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 128 156 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 vm_RS09260 a477a75ffad9b3e12a05a58d6424c901 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.7E-14 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS09260 a477a75ffad9b3e12a05a58d6424c901 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 141 160 2.7E-14 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS09260 a477a75ffad9b3e12a05a58d6424c901 242 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 162 179 2.7E-14 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS09260 a477a75ffad9b3e12a05a58d6424c901 242 SUPERFAMILY SSF51735 2 238 6.93E-45 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS09260 a477a75ffad9b3e12a05a58d6424c901 242 Pfam PF00106 short chain dehydrogenase 2 181 6.9E-33 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS11385 c8ce91515c9ee59c747c5bef9126d6f8 335 SUPERFAMILY SSF47413 22 92 5.91E-8 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS11385 c8ce91515c9ee59c747c5bef9126d6f8 335 Pfam PF13413 Helix-turn-helix domain 27 86 3.6E-18 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS11385 c8ce91515c9ee59c747c5bef9126d6f8 335 Gene3D G3DSA:1.10.260.40 20 92 7.0E-11 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS11385 c8ce91515c9ee59c747c5bef9126d6f8 335 Pfam PF13464 Domain of unknown function (DUF4115) 261 334 5.8E-25 T 11-11-2016 IPR025194 Domain of unknown function DUF4115 vm_RS11385 c8ce91515c9ee59c747c5bef9126d6f8 335 SMART SM00530 26 87 8.0E-4 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 Pfam PF00152 tRNA synthetases class II (D, K and N) 117 558 4.8E-106 T 11-11-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 518 532 2.7E-26 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 474 490 2.7E-26 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 190 202 2.7E-26 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 207 220 2.7E-26 T 11-11-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 582 6.4E-265 T 11-11-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 Reactome: R-HSA-379726 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 Gene3D G3DSA:3.30.930.10 131 275 1.9E-110 T 11-11-2016 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 Gene3D G3DSA:3.30.930.10 414 584 1.9E-110 T 11-11-2016 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 Pfam PF01336 OB-fold nucleic acid binding domain 18 102 3.8E-15 T 11-11-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 Gene3D G3DSA:3.30.1360.30 276 413 6.7E-50 T 11-11-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 SUPERFAMILY SSF55261 288 419 4.74E-47 T 11-11-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 SUPERFAMILY SSF50249 1 105 1.5E-33 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 SUPERFAMILY SSF55681 108 287 6.89E-102 T 11-11-2016 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 SUPERFAMILY SSF55681 420 582 6.89E-102 T 11-11-2016 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 Pfam PF02938 GAD domain 307 406 1.5E-31 T 11-11-2016 IPR029351 GAD domain Reactome: R-HSA-379726 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 1 563 36.772 T 11-11-2016 vm_RS09020 629600e9d9364d368daabb17c33cfbb6 591 Gene3D G3DSA:2.40.50.140 1 106 5.0E-39 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS06770 bc587b0c1aa25740467399037d0e4615 588 Gene3D G3DSA:3.40.50.300 2 154 5.0E-31 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06770 bc587b0c1aa25740467399037d0e4615 588 SUPERFAMILY SSF52540 236 362 1.85E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06770 bc587b0c1aa25740467399037d0e4615 588 SUPERFAMILY SSF52540 49 188 1.85E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06770 bc587b0c1aa25740467399037d0e4615 588 SUPERFAMILY SSF57829 425 465 2.01E-6 T 11-11-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 vm_RS06770 bc587b0c1aa25740467399037d0e4615 588 SMART SM00487 1 178 6.2E-14 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS06770 bc587b0c1aa25740467399037d0e4615 588 Pfam PF00271 Helicase conserved C-terminal domain 239 343 1.0E-14 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS06770 bc587b0c1aa25740467399037d0e4615 588 Pfam PF04851 Type III restriction enzyme, res subunit 2 154 8.6E-23 T 11-11-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 vm_RS06770 bc587b0c1aa25740467399037d0e4615 588 SMART SM00490 265 344 1.1E-12 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS06770 bc587b0c1aa25740467399037d0e4615 588 Gene3D G3DSA:3.40.50.300 236 363 2.0E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14160 af3fab365417cc020fa951b35033e228 152 Pfam PF00364 Biotin-requiring enzyme 78 151 9.0E-25 T 11-11-2016 IPR000089 Biotin/lipoyl attachment vm_RS14160 af3fab365417cc020fa951b35033e228 152 SUPERFAMILY SSF51230 77 152 2.75E-26 T 11-11-2016 IPR011053 Single hybrid motif vm_RS14160 af3fab365417cc020fa951b35033e228 152 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 81 94 1.3E-18 T 11-11-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 vm_RS14160 af3fab365417cc020fa951b35033e228 152 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 98 112 1.3E-18 T 11-11-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 vm_RS14160 af3fab365417cc020fa951b35033e228 152 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 113 126 1.3E-18 T 11-11-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 vm_RS14160 af3fab365417cc020fa951b35033e228 152 Gene3D G3DSA:2.40.50.100 76 152 6.4E-33 T 11-11-2016 vm_RS14160 af3fab365417cc020fa951b35033e228 152 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 108 125 - T 11-11-2016 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS14160 af3fab365417cc020fa951b35033e228 152 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 152 1.7E-62 T 11-11-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 vm_RS09740 8c9c77d3c16bd9d6e1a5a2852708fd07 86 SUPERFAMILY SSF116734 7 77 2.62E-5 T 11-11-2016 vm_RS00800 b49c5b1e8b5e3940f1d88d7947f39d83 334 Pfam PF00962 Adenosine/AMP deaminase 6 327 1.3E-88 T 11-11-2016 IPR001365 Adenosine/AMP deaminase domain GO:0019239 Reactome: R-HSA-74217 vm_RS00800 b49c5b1e8b5e3940f1d88d7947f39d83 334 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 7 329 8.0E-124 T 11-11-2016 IPR006330 Adenosine/adenine deaminase GO:0019239 Reactome: R-HSA-74217 vm_RS00800 b49c5b1e8b5e3940f1d88d7947f39d83 334 Gene3D G3DSA:3.20.20.140 4 329 1.5E-96 T 11-11-2016 vm_RS00800 b49c5b1e8b5e3940f1d88d7947f39d83 334 SUPERFAMILY SSF51556 5 326 9.08E-76 T 11-11-2016 IPR032466 Metal-dependent hydrolase vm_RS00800 b49c5b1e8b5e3940f1d88d7947f39d83 334 Hamap MF_00540 Adenosine deaminase [add]. 1 331 53.385 T 11-11-2016 IPR028893 Adenosine deaminase GO:0004000|GO:0009168 KEGG: 00230+3.5.4.4|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-74217 vm_RS03655 fda30676db397201c65d7c88eb1110aa 350 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 24 88 8.4E-20 T 11-11-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 vm_RS03655 fda30676db397201c65d7c88eb1110aa 350 Gene3D G3DSA:2.160.10.10 209 346 8.3E-25 T 11-11-2016 vm_RS03655 fda30676db397201c65d7c88eb1110aa 350 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 222 257 3.1E-4 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS03655 fda30676db397201c65d7c88eb1110aa 350 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 147 179 1.2E-8 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS03655 fda30676db397201c65d7c88eb1110aa 350 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 109 144 1.9E-10 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS03655 fda30676db397201c65d7c88eb1110aa 350 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 130 158 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 vm_RS03655 fda30676db397201c65d7c88eb1110aa 350 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 5 326 35.473 T 11-11-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 vm_RS03655 fda30676db397201c65d7c88eb1110aa 350 Gene3D G3DSA:2.160.10.10 107 208 1.5E-28 T 11-11-2016 vm_RS03655 fda30676db397201c65d7c88eb1110aa 350 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 8 329 1.2E-119 T 11-11-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 vm_RS03655 fda30676db397201c65d7c88eb1110aa 350 SUPERFAMILY SSF51161 32 316 7.63E-86 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS03655 fda30676db397201c65d7c88eb1110aa 350 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 100 128 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 vm_RS03655 fda30676db397201c65d7c88eb1110aa 350 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 106 134 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 vm_RS02135 e76a96b424ee45ef77187b901b2a80bf 302 PIRSF PIRSF002936 1 302 1.8E-156 T 11-11-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 vm_RS02135 e76a96b424ee45ef77187b901b2a80bf 302 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 29 257 6.0E-64 T 11-11-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 vm_RS02135 e76a96b424ee45ef77187b901b2a80bf 302 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 9 302 3.8E-163 T 11-11-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 vm_RS02135 e76a96b424ee45ef77187b901b2a80bf 302 SUPERFAMILY SSF52402 6 209 2.0E-73 T 11-11-2016 vm_RS02135 e76a96b424ee45ef77187b901b2a80bf 302 Gene3D G3DSA:3.40.50.620 3 210 1.1E-61 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS02135 e76a96b424ee45ef77187b901b2a80bf 302 Gene3D G3DSA:3.40.50.620 244 253 1.1E-61 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS02135 e76a96b424ee45ef77187b901b2a80bf 302 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 4 302 57.829 T 11-11-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932 vm_RS13425 0a52bbceb2502f006c19534319f32144 1280 Pfam PF13116 Protein of unknown function 493 779 6.2E-92 T 11-11-2016 IPR025263 Domain of unknown function DUF3971 vm_RS13425 0a52bbceb2502f006c19534319f32144 1280 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 1 1268 0.0 T 11-11-2016 IPR011836 Conserved hypothetical protein CHP02099 vm_RS13425 0a52bbceb2502f006c19534319f32144 1280 Pfam PF13502 AsmA-like C-terminal region 1018 1258 6.4E-60 T 11-11-2016 IPR032712 AsmA-like, C-terminal vm_RS08830 dcb6db7166396c225cbac199c8eafda4 402 TIGRFAM TIGR01224 hutI: imidazolonepropionase 24 397 3.5E-167 T 11-11-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 vm_RS08830 dcb6db7166396c225cbac199c8eafda4 402 Gene3D G3DSA:3.20.20.140 71 344 2.1E-37 T 11-11-2016 vm_RS08830 dcb6db7166396c225cbac199c8eafda4 402 Hamap MF_00372 Imidazolonepropionase [hutI]. 2 399 42.324 T 11-11-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 vm_RS08830 dcb6db7166396c225cbac199c8eafda4 402 Pfam PF01979 Amidohydrolase family 57 376 1.1E-15 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 vm_RS08830 dcb6db7166396c225cbac199c8eafda4 402 Gene3D G3DSA:2.30.40.10 2 70 5.2E-16 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS08830 dcb6db7166396c225cbac199c8eafda4 402 SUPERFAMILY SSF51338 361 399 2.59E-27 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS08830 dcb6db7166396c225cbac199c8eafda4 402 SUPERFAMILY SSF51338 1 60 2.59E-27 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS08830 dcb6db7166396c225cbac199c8eafda4 402 Gene3D G3DSA:2.30.40.10 345 392 1.5E-7 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS08830 dcb6db7166396c225cbac199c8eafda4 402 SUPERFAMILY SSF51556 60 356 3.85E-82 T 11-11-2016 IPR032466 Metal-dependent hydrolase vm_RS14030 37f1d254f422f257bd12dc0b6cbe435b 307 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 3 307 2.1E-144 T 11-11-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 vm_RS14030 37f1d254f422f257bd12dc0b6cbe435b 307 Gene3D G3DSA:3.40.50.300 2 307 1.3E-107 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14030 37f1d254f422f257bd12dc0b6cbe435b 307 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 82 234 5.0E-12 T 11-11-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 vm_RS14030 37f1d254f422f257bd12dc0b6cbe435b 307 PIRSF PIRSF000545 1 307 9.4E-145 T 11-11-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 vm_RS14030 37f1d254f422f257bd12dc0b6cbe435b 307 SUPERFAMILY SSF52540 2 307 4.0E-75 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14030 37f1d254f422f257bd12dc0b6cbe435b 307 Hamap MF_00215 Pantothenate kinase [coaA]. 1 307 179.79 T 11-11-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 vm_RS12545 0a3c7a04825d267d83d822ead9fb8465 158 Gene3D G3DSA:3.30.1330.50 1 157 2.0E-72 T 11-11-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 vm_RS12545 0a3c7a04825d267d83d822ead9fb8465 158 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 36 51 - T 11-11-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 vm_RS12545 0a3c7a04825d267d83d822ead9fb8465 158 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 2 157 35.946 T 11-11-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 vm_RS12545 0a3c7a04825d267d83d822ead9fb8465 158 SUPERFAMILY SSF69765 1 157 4.32E-66 T 11-11-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 vm_RS12545 0a3c7a04825d267d83d822ead9fb8465 158 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 3 157 2.1E-69 T 11-11-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 vm_RS12545 0a3c7a04825d267d83d822ead9fb8465 158 Pfam PF02542 YgbB family 2 155 3.3E-66 T 11-11-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 vm_RS10065 5e99634a0cf6c180c0509beff5290357 195 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 1 187 1.3E-88 T 11-11-2016 IPR010207 Electron transport complex, RnfB/RsxB GO:0009055|GO:0051536 vm_RS10065 5e99634a0cf6c180c0509beff5290357 195 PIRSF PIRSF005784 3 188 2.7E-86 T 11-11-2016 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 vm_RS10065 5e99634a0cf6c180c0509beff5290357 195 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 144 155 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS10065 5e99634a0cf6c180c0509beff5290357 195 Hamap MF_00463 Electron transport complex subunit RsxB [rsxB]. 4 182 42.577 T 11-11-2016 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria GO:0005886|GO:0022900|GO:0051536 vm_RS10065 5e99634a0cf6c180c0509beff5290357 195 Pfam PF04060 Putative Fe-S cluster 44 75 8.9E-15 T 11-11-2016 IPR007202 4Fe-4S domain GO:0051536 vm_RS10065 5e99634a0cf6c180c0509beff5290357 195 SUPERFAMILY SSF54862 37 172 5.24E-31 T 11-11-2016 vm_RS10065 5e99634a0cf6c180c0509beff5290357 195 Gene3D G3DSA:3.30.70.20 120 175 1.4E-16 T 11-11-2016 vm_RS10065 5e99634a0cf6c180c0509beff5290357 195 Gene3D G3DSA:1.10.1060.10 47 119 3.7E-5 T 11-11-2016 vm_RS10065 5e99634a0cf6c180c0509beff5290357 195 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 114 125 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS10065 5e99634a0cf6c180c0509beff5290357 195 Pfam PF14697 4Fe-4S dicluster domain 107 161 2.0E-17 T 11-11-2016 vm_RS09715 5644249c37c11b21b1d73f7a3bef9935 343 TIGRFAM TIGR02566 cas_Csy3: CRISPR type I-F/YPEST-associated protein Csy3 4 338 2.7E-66 T 11-11-2016 IPR013399 CRISPR-associated protein Csy3 vm_RS09715 5644249c37c11b21b1d73f7a3bef9935 343 Pfam PF09615 CRISPR-associated protein (Cas_Csy3) 4 337 2.8E-76 T 11-11-2016 IPR013399 CRISPR-associated protein Csy3 vm_RS09005 90dc4af76478549ba28cd810a3443343 418 PRINTS PR00173 Glutamate-aspartate symporter signature 78 103 3.0E-45 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS09005 90dc4af76478549ba28cd810a3443343 418 PRINTS PR00173 Glutamate-aspartate symporter signature 297 323 3.0E-45 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS09005 90dc4af76478549ba28cd810a3443343 418 PRINTS PR00173 Glutamate-aspartate symporter signature 147 169 3.0E-45 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS09005 90dc4af76478549ba28cd810a3443343 418 PRINTS PR00173 Glutamate-aspartate symporter signature 358 378 3.0E-45 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS09005 90dc4af76478549ba28cd810a3443343 418 PRINTS PR00173 Glutamate-aspartate symporter signature 332 351 3.0E-45 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS09005 90dc4af76478549ba28cd810a3443343 418 PRINTS PR00173 Glutamate-aspartate symporter signature 11 31 3.0E-45 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS09005 90dc4af76478549ba28cd810a3443343 418 PRINTS PR00173 Glutamate-aspartate symporter signature 195 214 3.0E-45 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS09005 90dc4af76478549ba28cd810a3443343 418 PRINTS PR00173 Glutamate-aspartate symporter signature 230 249 3.0E-45 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS09005 90dc4af76478549ba28cd810a3443343 418 SUPERFAMILY SSF118215 15 403 5.49E-109 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS09005 90dc4af76478549ba28cd810a3443343 418 Gene3D G3DSA:1.10.3860.10 11 408 3.5E-111 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS09005 90dc4af76478549ba28cd810a3443343 418 Pfam PF00375 Sodium:dicarboxylate symporter family 15 403 5.5E-118 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS07345 d8b76c0326a3920453a59530135f1a8f 158 Pfam PF11749 Protein of unknown function (DUF3305) 36 148 3.1E-19 T 11-11-2016 IPR021736 Protein of unknown function DUF3305 vm_RS00610 ebe765764b6a48e6cf4bad8fc1ee2d2d 203 Pfam PF03942 DTW domain 4 183 1.2E-45 T 11-11-2016 IPR005636 DTW vm_RS00610 ebe765764b6a48e6cf4bad8fc1ee2d2d 203 SMART SM01144 1 191 4.8E-52 T 11-11-2016 IPR005636 DTW vm_RS11925 0b630fae85b0998d0e4547314e787ba9 444 TIGRFAM TIGR00797 matE: MATE efflux family protein 15 410 9.8E-52 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS11925 0b630fae85b0998d0e4547314e787ba9 444 Pfam PF01554 MatE 246 398 3.2E-11 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS11925 0b630fae85b0998d0e4547314e787ba9 444 Pfam PF01554 MatE 15 176 1.7E-21 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS11925 0b630fae85b0998d0e4547314e787ba9 444 PIRSF PIRSF006603 1 442 1.1E-67 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 333 83.106 T 11-11-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 268 277 1.8E-25 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 297 320 1.8E-25 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 1.8E-25 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 1.8E-25 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 157 330 1.2E-56 T 11-11-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 332 4.6E-134 T 11-11-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 1.2E-45 T 11-11-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 Gene3D G3DSA:3.40.50.1370 5 143 4.5E-55 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 Gene3D G3DSA:3.40.50.1370 144 319 2.1E-75 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 4.8E-32 T 11-11-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 4.8E-32 T 11-11-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 311 322 4.8E-32 T 11-11-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 4.8E-32 T 11-11-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 PRINTS PR00102 Ornithine carbamoyltransferase signature 230 240 4.8E-32 T 11-11-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-70635 vm_RS02385 01fbdec1ae00c270ef3c434b6dc78853 334 SUPERFAMILY SSF53671 4 333 1.83E-99 T 11-11-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 vm_RS07795 91663a4e649445bd108af6835c3663e1 153 SUPERFAMILY SSF46785 15 150 1.52E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS07795 91663a4e649445bd108af6835c3663e1 153 Pfam PF01047 MarR family 44 101 6.0E-13 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS07795 91663a4e649445bd108af6835c3663e1 153 SMART SM00347 37 137 4.1E-20 T 11-11-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 vm_RS07795 91663a4e649445bd108af6835c3663e1 153 TIGRFAM TIGR02337 HpaR: homoprotocatechuate degradation operon regulator, HpaR 19 148 3.8E-56 T 11-11-2016 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR GO:0003677|GO:0010124|GO:0045892 vm_RS07795 91663a4e649445bd108af6835c3663e1 153 Gene3D G3DSA:1.10.10.10 15 148 5.8E-31 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS07795 91663a4e649445bd108af6835c3663e1 153 ProSitePatterns PS01117 MarR-type HTH domain signature. 76 110 - T 11-11-2016 IPR023187 Transcriptional regulator MarR-type, conserved site vm_RS06660 fba34995710a8ecd7bff5a6075072413 288 SUPERFAMILY SSF103481 41 142 1.07E-10 T 11-11-2016 vm_RS06660 fba34995710a8ecd7bff5a6075072413 288 Pfam PF00892 EamA-like transporter family 150 279 1.2E-19 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS06660 fba34995710a8ecd7bff5a6075072413 288 Pfam PF00892 EamA-like transporter family 8 138 3.7E-11 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS06660 fba34995710a8ecd7bff5a6075072413 288 SUPERFAMILY SSF103481 182 280 3.79E-13 T 11-11-2016 vm_RS14180 2575495aef871798a88862dcd2069eba 98 Pfam PF02954 Bacterial regulatory protein, Fis family 55 95 3.9E-14 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS14180 2575495aef871798a88862dcd2069eba 98 PIRSF PIRSF002097 1 98 2.1E-44 T 11-11-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 vm_RS14180 2575495aef871798a88862dcd2069eba 98 SUPERFAMILY SSF46689 8 98 1.84E-24 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS14180 2575495aef871798a88862dcd2069eba 98 PRINTS PR01591 DNA-binding protein FIS signature 57 69 2.0E-31 T 11-11-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 vm_RS14180 2575495aef871798a88862dcd2069eba 98 PRINTS PR01591 DNA-binding protein FIS signature 9 26 2.0E-31 T 11-11-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 vm_RS14180 2575495aef871798a88862dcd2069eba 98 PRINTS PR01591 DNA-binding protein FIS signature 26 42 2.0E-31 T 11-11-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 vm_RS14180 2575495aef871798a88862dcd2069eba 98 PRINTS PR01591 DNA-binding protein FIS signature 42 57 2.0E-31 T 11-11-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 vm_RS14180 2575495aef871798a88862dcd2069eba 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 61 78 3.3E-13 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS14180 2575495aef871798a88862dcd2069eba 98 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 78 98 3.3E-13 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS14180 2575495aef871798a88862dcd2069eba 98 Gene3D G3DSA:1.10.10.60 27 98 4.1E-27 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS14180 2575495aef871798a88862dcd2069eba 98 Hamap MF_00166 DNA-binding protein Fis [fis]. 1 98 31.402 T 11-11-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 vm_RS01160 5cbb5b6af6a47053be104a96c498c6f8 90 Pfam PF01192 RNA polymerase Rpb6 10 60 1.4E-17 T 11-11-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 vm_RS01160 5cbb5b6af6a47053be104a96c498c6f8 90 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 1.0E-29 T 11-11-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS01160 5cbb5b6af6a47053be104a96c498c6f8 90 SUPERFAMILY SSF63562 1 78 6.67E-26 T 11-11-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 vm_RS01160 5cbb5b6af6a47053be104a96c498c6f8 90 SMART SM01409 8 61 2.4E-16 T 11-11-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 vm_RS01160 5cbb5b6af6a47053be104a96c498c6f8 90 Gene3D G3DSA:3.90.940.10 1 77 5.3E-17 T 11-11-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708 vm_RS01160 5cbb5b6af6a47053be104a96c498c6f8 90 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 16.837 T 11-11-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 vm_RS14140 a7ea5a34ea53cc17ad99f55e25b8623e 607 SMART SM00116 155 212 1.8 T 11-11-2016 IPR000644 CBS domain vm_RS14140 a7ea5a34ea53cc17ad99f55e25b8623e 607 SMART SM00116 229 276 2.5 T 11-11-2016 IPR000644 CBS domain vm_RS14140 a7ea5a34ea53cc17ad99f55e25b8623e 607 SUPERFAMILY SSF54631 144 275 3.42E-17 T 11-11-2016 vm_RS14140 a7ea5a34ea53cc17ad99f55e25b8623e 607 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 470 603 7.5E-41 T 11-11-2016 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding vm_RS14140 a7ea5a34ea53cc17ad99f55e25b8623e 607 Gene3D G3DSA:2.60.120.10 8 128 6.2E-13 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS14140 a7ea5a34ea53cc17ad99f55e25b8623e 607 Pfam PF03445 Putative nucleotidyltransferase DUF294 301 430 7.6E-41 T 11-11-2016 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 vm_RS14140 a7ea5a34ea53cc17ad99f55e25b8623e 607 Gene3D G3DSA:3.10.580.10 148 276 5.9E-17 T 11-11-2016 vm_RS14140 a7ea5a34ea53cc17ad99f55e25b8623e 607 Pfam PF00027 Cyclic nucleotide-binding domain 31 113 1.2E-11 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain vm_RS14140 a7ea5a34ea53cc17ad99f55e25b8623e 607 SUPERFAMILY SSF51206 8 128 1.19E-16 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like vm_RS06000 8da8e2bc124b3e96bd03883760e1b6fd 375 SUPERFAMILY SSF56349 98 357 3.53E-35 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS06000 8da8e2bc124b3e96bd03883760e1b6fd 375 Gene3D G3DSA:1.10.443.10 183 357 4.5E-25 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS06000 8da8e2bc124b3e96bd03883760e1b6fd 375 Pfam PF00589 Phage integrase family 185 355 4.2E-17 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS08510 f9365e7d0ce4dcf14267ee7d01ff8ccc 198 SUPERFAMILY SSF142695 19 172 6.54E-55 T 11-11-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 vm_RS08510 f9365e7d0ce4dcf14267ee7d01ff8ccc 198 Pfam PF00925 GTP cyclohydrolase II 19 171 6.5E-59 T 11-11-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 vm_RS08510 f9365e7d0ce4dcf14267ee7d01ff8ccc 198 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 3 198 37.593 T 11-11-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 vm_RS04395 46999c4d1d7f9a70b915074bc6d806b0 671 Gene3D G3DSA:3.40.50.150 9 248 3.7E-104 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS04395 46999c4d1d7f9a70b915074bc6d806b0 671 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 116 241 2.4E-47 T 11-11-2016 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 vm_RS04395 46999c4d1d7f9a70b915074bc6d806b0 671 Pfam PF01266 FAD dependent oxidoreductase 265 634 3.9E-46 T 11-11-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 vm_RS04395 46999c4d1d7f9a70b915074bc6d806b0 671 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 5 659 28.205 T 11-11-2016 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 vm_RS04395 46999c4d1d7f9a70b915074bc6d806b0 671 Gene3D G3DSA:3.50.50.60 264 343 3.8E-25 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS04395 46999c4d1d7f9a70b915074bc6d806b0 671 Gene3D G3DSA:3.50.50.60 397 467 3.8E-25 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS04395 46999c4d1d7f9a70b915074bc6d806b0 671 Gene3D G3DSA:3.50.50.60 574 643 3.8E-25 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS04395 46999c4d1d7f9a70b915074bc6d806b0 671 SUPERFAMILY SSF51905 265 481 6.8E-30 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS04395 46999c4d1d7f9a70b915074bc6d806b0 671 SUPERFAMILY SSF51905 574 661 6.8E-30 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS04395 46999c4d1d7f9a70b915074bc6d806b0 671 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 265 664 1.5E-156 T 11-11-2016 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 vm_RS04395 46999c4d1d7f9a70b915074bc6d806b0 671 Gene3D G3DSA:3.30.9.10 468 552 1.8E-4 T 11-11-2016 vm_RS10020 79df146b74f4fbf8d88aa8aa1dc49445 435 SUPERFAMILY SSF102114 43 387 1.96E-40 T 11-11-2016 vm_RS10020 79df146b74f4fbf8d88aa8aa1dc49445 435 Pfam PF04055 Radical SAM superfamily 44 211 1.2E-12 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS10020 79df146b74f4fbf8d88aa8aa1dc49445 435 Gene3D G3DSA:3.20.20.70 44 394 3.1E-43 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS10020 79df146b74f4fbf8d88aa8aa1dc49445 435 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 195 432 6.0E-10 T 11-11-2016 vm_RS10020 79df146b74f4fbf8d88aa8aa1dc49445 435 TIGRFAM TIGR03942 sulfatase_rSAM: anaerobic sulfatase maturase 35 423 1.5E-152 T 11-11-2016 IPR023867 Anaerobic sulphatase maturase, radical SAM GO:0016491 vm_RS10020 79df146b74f4fbf8d88aa8aa1dc49445 435 Pfam PF13186 Iron-sulfur cluster-binding domain 318 378 4.1E-8 T 11-11-2016 IPR023885 4Fe4S-binding SPASM domain vm_RS10020 79df146b74f4fbf8d88aa8aa1dc49445 435 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 317 406 7.2E-18 T 11-11-2016 IPR023885 4Fe4S-binding SPASM domain vm_RS14315 7a9d322a964c88bb521208e54760f2a2 406 SUPERFAMILY SSF53756 27 395 4.81E-31 T 11-11-2016 vm_RS14315 7a9d322a964c88bb521208e54760f2a2 406 Gene3D G3DSA:3.40.50.2000 230 383 9.5E-5 T 11-11-2016 vm_RS14315 7a9d322a964c88bb521208e54760f2a2 406 Pfam PF13692 Glycosyl transferases group 1 229 368 3.1E-16 T 11-11-2016 vm_RS00725 8e6bf3a095be49d6003f957517de31fc 611 Pfam PF00593 TonB dependent receptor 388 610 6.3E-25 T 11-11-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 vm_RS00725 8e6bf3a095be49d6003f957517de31fc 611 Gene3D G3DSA:2.40.170.20 155 611 6.3E-78 T 11-11-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 vm_RS00725 8e6bf3a095be49d6003f957517de31fc 611 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 36 - T 11-11-2016 IPR010916 TonB box, conserved site vm_RS00725 8e6bf3a095be49d6003f957517de31fc 611 TIGRFAM TIGR01779 TonB-B12: TonB-dependent vitamin B12 receptor 1 611 1.2E-284 T 11-11-2016 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 vm_RS00725 8e6bf3a095be49d6003f957517de31fc 611 Pfam PF07715 TonB-dependent Receptor Plug Domain 43 148 4.4E-27 T 11-11-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 vm_RS00725 8e6bf3a095be49d6003f957517de31fc 611 SUPERFAMILY SSF56935 29 611 2.28E-109 T 11-11-2016 vm_RS00725 8e6bf3a095be49d6003f957517de31fc 611 Gene3D G3DSA:2.170.130.10 22 154 5.8E-40 T 11-11-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 vm_RS00725 8e6bf3a095be49d6003f957517de31fc 611 Hamap MF_01531 Vitamin B12 transporter BtuB [btuB]. 1 611 33.919 T 11-11-2016 IPR010101 TonB-dependent vitamin B12 transporter BtuB GO:0004872|GO:0015235|GO:0015889|GO:0016020 vm_RS00725 8e6bf3a095be49d6003f957517de31fc 611 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 594 611 - T 11-11-2016 IPR010917 TonB-dependent receptor, conserved site vm_RS11695 be72d295a1b32e7dcbeec6c54ae2cbc7 122 Gene3D G3DSA:2.40.10.220 1 119 7.5E-44 T 11-11-2016 vm_RS11695 be72d295a1b32e7dcbeec6c54ae2cbc7 122 SUPERFAMILY SSF141371 1 118 4.51E-32 T 11-11-2016 vm_RS11695 be72d295a1b32e7dcbeec6c54ae2cbc7 122 Pfam PF07238 PilZ domain 3 100 7.2E-14 T 11-11-2016 IPR009875 PilZ domain GO:0035438 vm_RS11695 be72d295a1b32e7dcbeec6c54ae2cbc7 122 PIRSF PIRSF028141 1 120 3.6E-37 T 11-11-2016 IPR027021 Cyclic di-GMP binding protein, PA4608 type vm_RS05760 82ae87e05e69276e9281daedb3ec6fb6 246 SUPERFAMILY SSF161098 110 227 3.01E-40 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS05760 82ae87e05e69276e9281daedb3ec6fb6 246 SUPERFAMILY SSF161098 11 78 3.01E-40 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS05760 82ae87e05e69276e9281daedb3ec6fb6 246 Gene3D G3DSA:1.10.3720.10 113 241 1.8E-40 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS05760 82ae87e05e69276e9281daedb3ec6fb6 246 Gene3D G3DSA:1.10.3720.10 8 81 1.8E-40 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS05760 82ae87e05e69276e9281daedb3ec6fb6 246 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 242 7.2E-23 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS05760 82ae87e05e69276e9281daedb3ec6fb6 246 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 74 9.8E-17 T 11-11-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 vm_RS08065 97d4795f48ab82375c628acb48145163 397 Gene3D G3DSA:3.30.750.80 72 179 1.4E-36 T 11-11-2016 vm_RS08065 97d4795f48ab82375c628acb48145163 397 SMART SM00359 3 86 1.1E-6 T 11-11-2016 IPR002478 PUA domain GO:0003723 vm_RS08065 97d4795f48ab82375c628acb48145163 397 SUPERFAMILY SSF53335 78 393 6.78E-70 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS08065 97d4795f48ab82375c628acb48145163 397 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 111 376 2.7E-29 T 11-11-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 vm_RS08065 97d4795f48ab82375c628acb48145163 397 Hamap MF_01857 Ribosomal RNA large subunit methyltransferase I [rlmI]. 1 397 68.392 T 11-11-2016 IPR023542 rRNA large subunit methyltransferase I GO:0008649 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS08065 97d4795f48ab82375c628acb48145163 397 Gene3D G3DSA:2.30.130.10 3 71 1.1E-26 T 11-11-2016 IPR015947 PUA-like domain vm_RS08065 97d4795f48ab82375c628acb48145163 397 SUPERFAMILY SSF88697 3 71 5.59E-17 T 11-11-2016 IPR015947 PUA-like domain vm_RS08065 97d4795f48ab82375c628acb48145163 397 Gene3D G3DSA:3.40.50.150 182 396 3.0E-58 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS10325 1a9b594a7a8a91d6aa301922a2386bf4 367 Pfam PF02562 PhoH-like protein 120 323 1.0E-94 T 11-11-2016 IPR003714 PhoH-like protein GO:0005524 vm_RS10325 1a9b594a7a8a91d6aa301922a2386bf4 367 Gene3D G3DSA:3.40.50.300 120 323 1.3E-87 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10325 1a9b594a7a8a91d6aa301922a2386bf4 367 SUPERFAMILY SSF52540 119 320 4.45E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06935 82a1812bf2f716569d79a363ead78496 538 Gene3D G3DSA:3.30.565.10 394 535 3.4E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS06935 82a1812bf2f716569d79a363ead78496 538 SUPERFAMILY SSF103190 39 169 2.71E-34 T 11-11-2016 IPR029151 Periplasmic sensor domain-like vm_RS06935 82a1812bf2f716569d79a363ead78496 538 Pfam PF00989 PAS fold 217 269 2.8E-6 T 11-11-2016 IPR013767 PAS fold GO:0006355 vm_RS06935 82a1812bf2f716569d79a363ead78496 538 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 423 536 2.1E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS06935 82a1812bf2f716569d79a363ead78496 538 SUPERFAMILY SSF55874 394 534 1.96E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS06935 82a1812bf2f716569d79a363ead78496 538 Gene3D G3DSA:1.10.287.130 311 378 2.2E-21 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS06935 82a1812bf2f716569d79a363ead78496 538 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 320 372 3.4E-9 T 11-11-2016 vm_RS06935 82a1812bf2f716569d79a363ead78496 538 SUPERFAMILY SSF55890 323 403 6.93E-10 T 11-11-2016 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 vm_RS06935 82a1812bf2f716569d79a363ead78496 538 SUPERFAMILY SSF55785 218 307 4.89E-14 T 11-11-2016 IPR000014 PAS domain vm_RS06935 82a1812bf2f716569d79a363ead78496 538 Pfam PF17203 Single cache domain 3 37 168 4.1E-19 T 11-11-2016 IPR033463 Single cache domain 3 vm_RS06935 82a1812bf2f716569d79a363ead78496 538 Gene3D G3DSA:3.30.450.20 32 171 9.0E-47 T 11-11-2016 vm_RS06935 82a1812bf2f716569d79a363ead78496 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 521 534 2.3E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS06935 82a1812bf2f716569d79a363ead78496 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 498 516 2.3E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS06935 82a1812bf2f716569d79a363ead78496 538 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 481 2.3E-8 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS06935 82a1812bf2f716569d79a363ead78496 538 Gene3D G3DSA:3.30.450.20 220 310 1.0E-10 T 11-11-2016 vm_RS06935 82a1812bf2f716569d79a363ead78496 538 SMART SM00387 419 537 3.5E-15 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS06935 82a1812bf2f716569d79a363ead78496 538 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 221 269 1.0E-6 T 11-11-2016 IPR000014 PAS domain vm_RS10430 602ae46933d677e9b39ba780a0fa132f 230 Gene3D G3DSA:1.25.40.10 55 163 6.0E-5 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS13255 8c6818ec3f1c716c38ce3301650654bf 322 Gene3D G3DSA:3.40.190.10 251 320 2.4E-67 T 11-11-2016 vm_RS13255 8c6818ec3f1c716c38ce3301650654bf 322 Gene3D G3DSA:3.40.190.10 25 108 2.4E-67 T 11-11-2016 vm_RS13255 8c6818ec3f1c716c38ce3301650654bf 322 Gene3D G3DSA:3.40.190.10 118 250 6.5E-37 T 11-11-2016 vm_RS13255 8c6818ec3f1c716c38ce3301650654bf 322 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 9 319 6.3E-113 T 11-11-2016 IPR011852 TRAP transporter solute receptor, TAXI family vm_RS13255 8c6818ec3f1c716c38ce3301650654bf 322 SUPERFAMILY SSF53850 25 321 6.14E-90 T 11-11-2016 vm_RS13255 8c6818ec3f1c716c38ce3301650654bf 322 Pfam PF16868 NMT1-like family 30 319 2.4E-99 T 11-11-2016 IPR011852 TRAP transporter solute receptor, TAXI family vm_RS13525 488933adfb67e2f36e3e2edb8b271d5d 216 Pfam PF04612 Type II secretion system (T2SS), protein M 8 83 6.1E-9 T 11-11-2016 IPR007690 Type II secretion system, protein M GO:0006858 vm_RS13525 488933adfb67e2f36e3e2edb8b271d5d 216 Gene3D G3DSA:3.30.70.60 112 194 2.9E-6 T 11-11-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 vm_RS07125 9ceae7065f688c698976ab39df74c518 420 Pfam PF02321 Outer membrane efflux protein 26 202 3.1E-25 T 11-11-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 vm_RS07125 9ceae7065f688c698976ab39df74c518 420 Pfam PF02321 Outer membrane efflux protein 226 404 1.6E-24 T 11-11-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 vm_RS07125 9ceae7065f688c698976ab39df74c518 420 SUPERFAMILY SSF56954 2 408 1.28E-67 T 11-11-2016 vm_RS07125 9ceae7065f688c698976ab39df74c518 420 Gene3D G3DSA:1.20.1600.10 24 409 1.7E-57 T 11-11-2016 vm_RS05685 e3c3099ab9f6e0eac5dab7275e948320 477 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 371 476 1.7E-14 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05685 e3c3099ab9f6e0eac5dab7275e948320 477 SUPERFAMILY SSF55874 334 475 1.28E-23 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05685 e3c3099ab9f6e0eac5dab7275e948320 477 Gene3D G3DSA:1.10.287.130 265 320 8.8E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05685 e3c3099ab9f6e0eac5dab7275e948320 477 SUPERFAMILY SSF47384 259 320 1.08E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS05685 e3c3099ab9f6e0eac5dab7275e948320 477 Pfam PF00672 HAMP domain 205 269 7.0E-8 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS05685 e3c3099ab9f6e0eac5dab7275e948320 477 Gene3D G3DSA:3.30.565.10 342 475 5.5E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS05685 e3c3099ab9f6e0eac5dab7275e948320 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 418 1.5E-6 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05685 e3c3099ab9f6e0eac5dab7275e948320 477 PRINTS PR00344 Bacterial sensor protein C-terminal signature 437 455 1.5E-6 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS05685 e3c3099ab9f6e0eac5dab7275e948320 477 SMART SM00387 370 477 4.2E-18 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS13300 179968d8d8bbc252da9a03790449247b 494 SUPERFAMILY SSF51338 435 488 9.26E-15 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS13300 179968d8d8bbc252da9a03790449247b 494 SUPERFAMILY SSF51338 16 70 9.26E-15 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS13300 179968d8d8bbc252da9a03790449247b 494 Gene3D G3DSA:3.30.1490.130 296 351 3.6E-26 T 11-11-2016 IPR023100 D-aminoacylase, insert domain GO:0016811 vm_RS13300 179968d8d8bbc252da9a03790449247b 494 Gene3D G3DSA:3.20.20.140 352 411 3.1E-116 T 11-11-2016 vm_RS13300 179968d8d8bbc252da9a03790449247b 494 Gene3D G3DSA:3.20.20.140 83 293 3.1E-116 T 11-11-2016 vm_RS13300 179968d8d8bbc252da9a03790449247b 494 Gene3D G3DSA:2.30.40.10 412 478 1.8E-10 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS13300 179968d8d8bbc252da9a03790449247b 494 Gene3D G3DSA:2.30.40.10 15 82 1.3E-11 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS13300 179968d8d8bbc252da9a03790449247b 494 SUPERFAMILY SSF51556 69 427 2.72E-84 T 11-11-2016 IPR032466 Metal-dependent hydrolase vm_RS13300 179968d8d8bbc252da9a03790449247b 494 Pfam PF07969 Amidohydrolase family 62 472 7.0E-38 T 11-11-2016 IPR013108 Amidohydrolase 3 vm_RS06895 02b13048b9d5c4b7fb611acf6a9d829e 237 Pfam PF13424 Tetratricopeptide repeat 104 168 9.5E-10 T 11-11-2016 vm_RS06895 02b13048b9d5c4b7fb611acf6a9d829e 237 SMART SM00028 103 136 17.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS06895 02b13048b9d5c4b7fb611acf6a9d829e 237 SMART SM00028 35 68 0.25 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS06895 02b13048b9d5c4b7fb611acf6a9d829e 237 SMART SM00028 139 172 0.03 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS06895 02b13048b9d5c4b7fb611acf6a9d829e 237 SMART SM00028 69 102 0.79 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS06895 02b13048b9d5c4b7fb611acf6a9d829e 237 Gene3D G3DSA:1.25.40.10 24 121 1.4E-19 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS06895 02b13048b9d5c4b7fb611acf6a9d829e 237 SMART SM00386 83 115 56.0 T 11-11-2016 IPR003107 HAT (Half-A-TPR) repeat GO:0006396 vm_RS06895 02b13048b9d5c4b7fb611acf6a9d829e 237 SMART SM00386 49 81 150.0 T 11-11-2016 IPR003107 HAT (Half-A-TPR) repeat GO:0006396 vm_RS06895 02b13048b9d5c4b7fb611acf6a9d829e 237 SMART SM00386 153 185 22.0 T 11-11-2016 IPR003107 HAT (Half-A-TPR) repeat GO:0006396 vm_RS06895 02b13048b9d5c4b7fb611acf6a9d829e 237 SUPERFAMILY SSF48452 25 171 7.78E-22 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS06895 02b13048b9d5c4b7fb611acf6a9d829e 237 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 6 234 1.5E-75 T 11-11-2016 IPR013360 Pilus biogenesis/stability type IV, PilW vm_RS06895 02b13048b9d5c4b7fb611acf6a9d829e 237 Gene3D G3DSA:1.25.40.10 122 221 2.4E-7 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS00585 9c81d3b6aae75b17d0a8c31a7ca8fbb1 276 Gene3D G3DSA:3.10.310.10 123 264 1.3E-50 T 11-11-2016 vm_RS00585 9c81d3b6aae75b17d0a8c31a7ca8fbb1 276 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 274 1.9E-101 T 11-11-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 vm_RS00585 9c81d3b6aae75b17d0a8c31a7ca8fbb1 276 Pfam PF01678 Diaminopimelate epimerase 154 269 1.0E-31 T 11-11-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 vm_RS00585 9c81d3b6aae75b17d0a8c31a7ca8fbb1 276 Pfam PF01678 Diaminopimelate epimerase 5 124 9.4E-34 T 11-11-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 vm_RS00585 9c81d3b6aae75b17d0a8c31a7ca8fbb1 276 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 39.432 T 11-11-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 vm_RS00585 9c81d3b6aae75b17d0a8c31a7ca8fbb1 276 Gene3D G3DSA:3.10.310.10 4 122 1.4E-49 T 11-11-2016 vm_RS00585 9c81d3b6aae75b17d0a8c31a7ca8fbb1 276 SUPERFAMILY SSF54506 2 274 4.71E-52 T 11-11-2016 vm_RS00585 9c81d3b6aae75b17d0a8c31a7ca8fbb1 276 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 11-11-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 vm_RS07605 9e31bb2c55342b638091334d589b487b 310 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 3 270 57.828 T 11-11-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 Reactome: R-HSA-6782315 vm_RS07605 9e31bb2c55342b638091334d589b487b 310 Gene3D G3DSA:3.40.50.620 26 208 6.1E-22 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS07605 9e31bb2c55342b638091334d589b487b 310 SUPERFAMILY SSF52402 29 254 8.38E-57 T 11-11-2016 vm_RS07605 9e31bb2c55342b638091334d589b487b 310 Pfam PF01171 PP-loop family 43 203 6.1E-15 T 11-11-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 vm_RS08565 9e020b3e7195ffbb6f83a2624ae1b42a 228 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 132 143 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS08565 9e020b3e7195ffbb6f83a2624ae1b42a 228 Gene3D G3DSA:3.30.70.20 136 172 7.2E-15 T 11-11-2016 vm_RS08565 9e020b3e7195ffbb6f83a2624ae1b42a 228 SUPERFAMILY SSF54862 42 224 9.73E-64 T 11-11-2016 vm_RS08565 9e020b3e7195ffbb6f83a2624ae1b42a 228 Pfam PF13247 4Fe-4S dicluster domain 91 188 4.9E-26 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain vm_RS08565 9e020b3e7195ffbb6f83a2624ae1b42a 228 TIGRFAM TIGR03149 cyt_nit_nrfC: cytochrome c nitrite reductase, Fe-S protein 2 228 8.2E-131 T 11-11-2016 IPR017567 Cytochrome c nitrite reductase, Fe-S protein vm_RS08565 9e020b3e7195ffbb6f83a2624ae1b42a 228 Gene3D G3DSA:3.30.70.20 43 102 1.9E-34 T 11-11-2016 vm_RS08565 9e020b3e7195ffbb6f83a2624ae1b42a 228 Gene3D G3DSA:3.30.70.20 173 226 1.9E-34 T 11-11-2016 vm_RS08565 9e020b3e7195ffbb6f83a2624ae1b42a 228 Gene3D G3DSA:3.30.70.20 103 135 7.3E-13 T 11-11-2016 vm_RS07670 1f7670ffb396f8d42ef9efadfe7fe11a 273 Gene3D G3DSA:3.30.70.270 130 260 1.7E-26 T 11-11-2016 vm_RS07670 1f7670ffb396f8d42ef9efadfe7fe11a 273 Pfam PF00990 Diguanylate cyclase, GGDEF domain 128 259 5.0E-22 T 11-11-2016 IPR000160 GGDEF domain vm_RS07670 1f7670ffb396f8d42ef9efadfe7fe11a 273 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 126 261 2.2E-21 T 11-11-2016 IPR000160 GGDEF domain vm_RS07670 1f7670ffb396f8d42ef9efadfe7fe11a 273 SMART SM00267 117 272 1.5E-22 T 11-11-2016 IPR000160 GGDEF domain vm_RS07670 1f7670ffb396f8d42ef9efadfe7fe11a 273 SUPERFAMILY SSF55073 133 260 1.1E-26 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS13310 0c7d95458ea66935937769b36443bddf 297 Gene3D G3DSA:3.40.50.10490 95 265 4.4E-32 T 11-11-2016 vm_RS13310 0c7d95458ea66935937769b36443bddf 297 Pfam PF01380 SIS domain 124 250 8.7E-17 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 vm_RS13310 0c7d95458ea66935937769b36443bddf 297 SUPERFAMILY SSF53697 95 264 8.42E-35 T 11-11-2016 vm_RS13310 0c7d95458ea66935937769b36443bddf 297 Pfam PF01418 Helix-turn-helix domain, rpiR family 7 78 1.9E-15 T 11-11-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 vm_RS13310 0c7d95458ea66935937769b36443bddf 297 Gene3D G3DSA:1.10.10.10 6 79 8.4E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS13310 0c7d95458ea66935937769b36443bddf 297 SUPERFAMILY SSF46689 5 79 2.69E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS02270 25d7f0a3852db2e385ee624c22e53979 92 Gene3D G3DSA:3.30.1340.10 4 90 6.3E-28 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS02270 25d7f0a3852db2e385ee624c22e53979 92 PRINTS PR00107 Phosphocarrier protein signature 15 31 6.1E-12 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS02270 25d7f0a3852db2e385ee624c22e53979 92 PRINTS PR00107 Phosphocarrier protein signature 41 56 6.1E-12 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS02270 25d7f0a3852db2e385ee624c22e53979 92 PRINTS PR00107 Phosphocarrier protein signature 56 73 6.1E-12 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS02270 25d7f0a3852db2e385ee624c22e53979 92 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 15 22 - T 11-11-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site vm_RS02270 25d7f0a3852db2e385ee624c22e53979 92 SUPERFAMILY SSF55594 5 91 4.97E-25 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS02270 25d7f0a3852db2e385ee624c22e53979 92 Pfam PF00381 PTS HPr component phosphorylation site 5 85 2.6E-23 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS02270 25d7f0a3852db2e385ee624c22e53979 92 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 42 57 - T 11-11-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site vm_RS02270 25d7f0a3852db2e385ee624c22e53979 92 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 4 85 4.2E-23 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS12720 f26e6bac0de597fa38cebfc7cbccfc94 199 Gene3D G3DSA:1.10.510.10 90 166 2.6E-14 T 11-11-2016 vm_RS12720 f26e6bac0de597fa38cebfc7cbccfc94 199 Gene3D G3DSA:3.30.200.20 15 89 3.3E-9 T 11-11-2016 vm_RS12720 f26e6bac0de597fa38cebfc7cbccfc94 199 Pfam PF00069 Protein kinase domain 20 183 1.7E-13 T 11-11-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 vm_RS12720 f26e6bac0de597fa38cebfc7cbccfc94 199 SUPERFAMILY SSF56112 21 166 1.48E-18 T 11-11-2016 IPR011009 Protein kinase-like domain vm_RS10530 fe01acebca136f230dcf2e8d0ce76439 372 SUPERFAMILY SSF53756 2 371 1.88E-138 T 11-11-2016 vm_RS10530 fe01acebca136f230dcf2e8d0ce76439 372 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 23 370 2.3E-123 T 11-11-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 vm_RS10530 fe01acebca136f230dcf2e8d0ce76439 372 Gene3D G3DSA:3.40.50.2000 2 210 4.3E-87 T 11-11-2016 vm_RS10530 fe01acebca136f230dcf2e8d0ce76439 372 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 3 370 3.6E-162 T 11-11-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 vm_RS10530 fe01acebca136f230dcf2e8d0ce76439 372 Gene3D G3DSA:3.40.50.2000 211 371 1.1E-65 T 11-11-2016 vm_RS03050 091842ef82af595f7ea10c429bd000a7 276 SUPERFAMILY SSF53807 24 270 2.35E-59 T 11-11-2016 vm_RS03050 091842ef82af595f7ea10c429bd000a7 276 Hamap MF_01000 Vitamin B12-binding protein [btuF]. 4 274 50.882 T 11-11-2016 IPR023544 ABC transporter, vitamin B12-binding protein GO:0015889|GO:0031419|GO:0042597 vm_RS03050 091842ef82af595f7ea10c429bd000a7 276 Pfam PF01497 Periplasmic binding protein 28 249 3.6E-31 T 11-11-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 vm_RS03050 091842ef82af595f7ea10c429bd000a7 276 Gene3D G3DSA:3.40.50.1980 25 142 6.7E-30 T 11-11-2016 vm_RS03050 091842ef82af595f7ea10c429bd000a7 276 Gene3D G3DSA:3.40.50.1980 145 270 6.4E-37 T 11-11-2016 vm_RS03045 011652bc9675e3ccca6cedddb50d8de5 206 Pfam PF03458 UPF0126 domain 95 165 5.3E-19 T 11-11-2016 IPR005115 Uncharacterised domain UPF0126 vm_RS03045 011652bc9675e3ccca6cedddb50d8de5 206 Pfam PF03458 UPF0126 domain 8 81 3.7E-22 T 11-11-2016 IPR005115 Uncharacterised domain UPF0126 vm_RS14195 a744829386149643b81cbf5b057210c7 172 Pfam PF01202 Shikimate kinase 13 128 1.4E-13 T 11-11-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 vm_RS14195 a744829386149643b81cbf5b057210c7 172 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 6 161 5.8E-64 T 11-11-2016 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530 vm_RS14195 a744829386149643b81cbf5b057210c7 172 Gene3D G3DSA:3.40.50.300 3 166 8.7E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14195 a744829386149643b81cbf5b057210c7 172 SUPERFAMILY SSF52540 4 167 3.12E-26 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08005 0e3ca100bf4641d1b326a8726d167b52 231 SUPERFAMILY SSF52402 1 212 3.09E-68 T 11-11-2016 vm_RS08005 0e3ca100bf4641d1b326a8726d167b52 231 Pfam PF06508 Queuosine biosynthesis protein QueC 3 211 2.1E-85 T 11-11-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 vm_RS08005 0e3ca100bf4641d1b326a8726d167b52 231 Gene3D G3DSA:3.40.50.620 1 212 8.9E-85 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS08005 0e3ca100bf4641d1b326a8726d167b52 231 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 4 205 5.0E-83 T 11-11-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 vm_RS08005 0e3ca100bf4641d1b326a8726d167b52 231 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 2 218 50.492 T 11-11-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 vm_RS08005 0e3ca100bf4641d1b326a8726d167b52 231 PIRSF PIRSF006293 1 223 1.6E-82 T 11-11-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703 vm_RS07595 4e026cc690cb4be51ce30a753d47ec7f 250 SUPERFAMILY SSF46785 165 244 4.43E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS07595 4e026cc690cb4be51ce30a753d47ec7f 250 Gene3D G3DSA:2.60.120.10 18 169 2.9E-41 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS07595 4e026cc690cb4be51ce30a753d47ec7f 250 SMART SM00100 30 151 2.1E-20 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain vm_RS07595 4e026cc690cb4be51ce30a753d47ec7f 250 SUPERFAMILY SSF51206 23 162 2.49E-31 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like vm_RS07595 4e026cc690cb4be51ce30a753d47ec7f 250 Pfam PF00027 Cyclic nucleotide-binding domain 51 132 1.8E-15 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain vm_RS07595 4e026cc690cb4be51ce30a753d47ec7f 250 Gene3D G3DSA:1.10.10.10 170 235 6.2E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS07595 4e026cc690cb4be51ce30a753d47ec7f 250 Pfam PF13545 Crp-like helix-turn-helix domain 168 241 1.2E-16 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 vm_RS07595 4e026cc690cb4be51ce30a753d47ec7f 250 ProSitePatterns PS00042 Crp-type HTH domain signature. 195 218 - T 11-11-2016 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 vm_RS07595 4e026cc690cb4be51ce30a753d47ec7f 250 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 209 224 2.6E-11 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 vm_RS07595 4e026cc690cb4be51ce30a753d47ec7f 250 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 193 209 2.6E-11 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 vm_RS07595 4e026cc690cb4be51ce30a753d47ec7f 250 SMART SM00419 187 235 1.1E-14 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 vm_RS03570 33e0c440224c2913b8d2ec68861a26fb 156 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 13 151 3.8E-56 T 11-11-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS03570 33e0c440224c2913b8d2ec68861a26fb 156 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 14 150 6.5E-55 T 11-11-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS03570 33e0c440224c2913b8d2ec68861a26fb 156 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 154 31.34 T 11-11-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS03570 33e0c440224c2913b8d2ec68861a26fb 156 Gene3D G3DSA:3.40.50.960 3 154 6.3E-65 T 11-11-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS03570 33e0c440224c2913b8d2ec68861a26fb 156 SUPERFAMILY SSF52121 4 154 1.27E-60 T 11-11-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS06260 1199eaa598f0e7809e811fc833206137 760 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 178 277 1.7E-9 T 11-11-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 vm_RS06260 1199eaa598f0e7809e811fc833206137 760 Gene3D G3DSA:2.40.110.10 178 289 6.0E-18 T 11-11-2016 vm_RS06260 1199eaa598f0e7809e811fc833206137 760 Gene3D G3DSA:1.10.540.10 64 171 1.3E-26 T 11-11-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 vm_RS06260 1199eaa598f0e7809e811fc833206137 760 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 67 173 3.2E-14 T 11-11-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 vm_RS06260 1199eaa598f0e7809e811fc833206137 760 Pfam PF09317 Domain of unknown function (DUF1974) 455 739 2.4E-110 T 11-11-2016 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 vm_RS06260 1199eaa598f0e7809e811fc833206137 760 SUPERFAMILY SSF47203 301 453 6.28E-20 T 11-11-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 vm_RS06260 1199eaa598f0e7809e811fc833206137 760 SUPERFAMILY SSF56645 61 296 1.44E-45 T 11-11-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 vm_RS06260 1199eaa598f0e7809e811fc833206137 760 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 301 447 5.0E-8 T 11-11-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 vm_RS06260 1199eaa598f0e7809e811fc833206137 760 Gene3D G3DSA:1.20.140.10 290 448 6.0E-21 T 11-11-2016 vm_RS05955 cfac71c01a8ba29f037b04ac170520a9 296 SUPERFAMILY SSF103481 42 132 2.09E-5 T 11-11-2016 vm_RS05955 cfac71c01a8ba29f037b04ac170520a9 296 Pfam PF00892 EamA-like transporter family 141 280 4.5E-15 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS05955 cfac71c01a8ba29f037b04ac170520a9 296 Pfam PF00892 EamA-like transporter family 7 131 9.5E-9 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS05955 cfac71c01a8ba29f037b04ac170520a9 296 SUPERFAMILY SSF103481 196 282 5.49E-8 T 11-11-2016 vm_RS13815 dff4f9196233af3c590190430877e8ee 325 TIGRFAM TIGR01932 hflC: HflC protein 1 317 2.0E-137 T 11-11-2016 IPR010200 HflC GO:0016021|GO:0052547 vm_RS13815 dff4f9196233af3c590190430877e8ee 325 SUPERFAMILY SSF117892 55 141 1.57E-22 T 11-11-2016 IPR001107 Band 7 domain vm_RS13815 dff4f9196233af3c590190430877e8ee 325 SUPERFAMILY SSF117892 172 222 1.57E-22 T 11-11-2016 IPR001107 Band 7 domain vm_RS13815 dff4f9196233af3c590190430877e8ee 325 Pfam PF01145 SPFH domain / Band 7 family 22 232 2.5E-29 T 11-11-2016 IPR001107 Band 7 domain vm_RS13815 dff4f9196233af3c590190430877e8ee 325 SMART SM00244 18 217 3.6E-48 T 11-11-2016 IPR001107 Band 7 domain vm_RS13815 dff4f9196233af3c590190430877e8ee 325 PIRSF PIRSF005651 1 325 2.5E-93 T 11-11-2016 IPR010200 HflC GO:0016021|GO:0052547 vm_RS02300 0c423c8a3fd5b549129eaf3a867670e4 165 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 1 160 24.291 T 11-11-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 vm_RS02300 0c423c8a3fd5b549129eaf3a867670e4 165 Gene3D G3DSA:2.60.450.10 21 156 4.3E-38 T 11-11-2016 vm_RS02300 0c423c8a3fd5b549129eaf3a867670e4 165 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 20 160 3.2E-47 T 11-11-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 vm_RS02300 0c423c8a3fd5b549129eaf3a867670e4 165 Pfam PF03968 OstA-like protein 30 141 6.7E-29 T 11-11-2016 IPR005653 Organic solvent tolerance-like, N-terminal vm_RS08570 ff11004f358d7fed0faa73cd2722ae07 195 Gene3D G3DSA:1.10.3820.10 29 194 2.5E-18 T 11-11-2016 vm_RS08570 ff11004f358d7fed0faa73cd2722ae07 195 TIGRFAM TIGR03146 cyt_nit_nrfB: cytochrome c nitrite reductase, pentaheme subunit 42 189 1.2E-60 T 11-11-2016 IPR017564 Cytochrome c nitrite reductase, pentahaem subunit GO:0006807|GO:0020037|GO:0042597 vm_RS08570 ff11004f358d7fed0faa73cd2722ae07 195 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 152 189 2.0E-4 T 11-11-2016 IPR010177 Doubled CXXCH motif vm_RS08570 ff11004f358d7fed0faa73cd2722ae07 195 SUPERFAMILY SSF48695 48 193 1.47E-25 T 11-11-2016 IPR011031 Multihaem cytochrome vm_RS03920 8598cb01da61a3e1831957f5f3b6c714 397 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 4 397 5.9E-108 T 11-11-2016 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 vm_RS03920 8598cb01da61a3e1831957f5f3b6c714 397 SUPERFAMILY SSF64518 1 397 6.67E-63 T 11-11-2016 vm_RS03920 8598cb01da61a3e1831957f5f3b6c714 397 Gene3D G3DSA:1.20.1330.10 57 170 6.4E-10 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS03920 8598cb01da61a3e1831957f5f3b6c714 397 Gene3D G3DSA:1.20.1330.10 302 349 6.4E-10 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS03920 8598cb01da61a3e1831957f5f3b6c714 397 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 142 1.7E-9 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 SUPERFAMILY SSF52172 14 199 1.71E-39 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 367 376 - T 11-11-2016 IPR025944 Sigma-54 interaction domain, conserved site vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 Pfam PF02954 Bacterial regulatory protein, Fis family 435 475 2.8E-8 T 11-11-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 240 255 - T 11-11-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 Gene3D G3DSA:1.10.8.60 327 387 1.9E-15 T 11-11-2016 vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 SUPERFAMILY SSF52540 155 384 6.98E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 SUPERFAMILY SSF46689 427 475 3.58E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 Pfam PF00158 Sigma-54 interaction domain 155 321 3.0E-67 T 11-11-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 SMART SM00448 16 127 5.7E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 SMART SM00382 175 318 9.4E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 179 192 - T 11-11-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 Gene3D G3DSA:3.40.50.2300 17 140 2.0E-31 T 11-11-2016 vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 Gene3D G3DSA:1.10.10.60 427 476 1.1E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 Gene3D G3DSA:3.40.50.300 153 326 9.1E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07320 23280aed0d0eaae0d6be697fa83a6a62 484 Pfam PF00072 Response regulator receiver domain 18 128 1.6E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS11590 e1e2485d1febb0fd210403896c6a96f1 240 Gene3D G3DSA:3.40.109.10 1 239 1.9E-74 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 vm_RS11590 e1e2485d1febb0fd210403896c6a96f1 240 Pfam PF00881 Nitroreductase family 8 159 1.3E-20 T 11-11-2016 IPR029479 Nitroreductase Reactome: R-HSA-209968 vm_RS11590 e1e2485d1febb0fd210403896c6a96f1 240 PIRSF PIRSF005426 1 240 1.9E-80 T 11-11-2016 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 vm_RS11590 e1e2485d1febb0fd210403896c6a96f1 240 SUPERFAMILY SSF55469 1 239 4.58E-73 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 vm_RS03550 a3b47303d6ee6fe4f148535205490ea2 149 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 5.5E-73 T 11-11-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 vm_RS03550 a3b47303d6ee6fe4f148535205490ea2 149 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 149 90.783 T 11-11-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 vm_RS03550 a3b47303d6ee6fe4f148535205490ea2 149 Pfam PF03477 ATP cone domain 50 136 1.6E-16 T 11-11-2016 IPR005144 ATP-cone domain Reactome: R-HSA-499943 vm_RS14190 f77c280dd6bc132a69b02f9a0c18df67 598 SUPERFAMILY SSF52016 418 596 3.06E-53 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel vm_RS14190 f77c280dd6bc132a69b02f9a0c18df67 598 SUPERFAMILY SSF143975 2 417 4.71E-131 T 11-11-2016 vm_RS14190 f77c280dd6bc132a69b02f9a0c18df67 598 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 3 596 1.2E-248 T 11-11-2016 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12 vm_RS14190 f77c280dd6bc132a69b02f9a0c18df67 598 Pfam PF00920 Dehydratase family 67 594 3.0E-149 T 11-11-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 vm_RS14190 f77c280dd6bc132a69b02f9a0c18df67 598 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 504 515 - T 11-11-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 vm_RS14190 f77c280dd6bc132a69b02f9a0c18df67 598 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 155 165 - T 11-11-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111 vm_RS06050 c6e668d4d23c8343f99f2d5409ad1dbb 208 SUPERFAMILY SSF110849 50 179 2.44E-17 T 11-11-2016 IPR003115 ParB/Sulfiredoxin vm_RS06050 c6e668d4d23c8343f99f2d5409ad1dbb 208 Gene3D G3DSA:3.90.1530.10 47 152 1.1E-12 T 11-11-2016 vm_RS06050 c6e668d4d23c8343f99f2d5409ad1dbb 208 SMART SM00470 52 147 4.4E-8 T 11-11-2016 IPR003115 ParB/Sulfiredoxin vm_RS06050 c6e668d4d23c8343f99f2d5409ad1dbb 208 Pfam PF02195 ParB-like nuclease domain 54 146 3.4E-10 T 11-11-2016 IPR003115 ParB/Sulfiredoxin vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 Pfam PF00199 Catalase 25 401 6.0E-168 T 11-11-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 SMART SM01060 25 406 3.4E-244 T 11-11-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 PIRSF PIRSF038928 16 496 6.4E-189 T 11-11-2016 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 ProSitePatterns PS00438 Catalase proximal active site signature. 61 77 - T 11-11-2016 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 SUPERFAMILY SSF56634 20 499 2.36E-192 T 11-11-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 Gene3D G3DSA:2.40.180.10 18 373 5.4E-166 T 11-11-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 PRINTS PR00067 Catalase signature 336 362 1.4E-69 T 11-11-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 PRINTS PR00067 Catalase signature 101 119 1.4E-69 T 11-11-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 PRINTS PR00067 Catalase signature 141 159 1.4E-69 T 11-11-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 PRINTS PR00067 Catalase signature 38 61 1.4E-69 T 11-11-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 PRINTS PR00067 Catalase signature 304 331 1.4E-69 T 11-11-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 PRINTS PR00067 Catalase signature 122 139 1.4E-69 T 11-11-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 349 357 - T 11-11-2016 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS07015 3125efe9732e6881f9ab58d8445f4585 503 Pfam PF06628 Catalase-related immune-responsive 431 489 3.1E-20 T 11-11-2016 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6|Reactome: R-HSA-3299685|Reactome: R-HSA-74259 vm_RS04680 3e53188c2ea8461865d9d038491c4a73 184 Pfam PF08534 Redoxin 41 163 1.8E-27 T 11-11-2016 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 vm_RS04680 3e53188c2ea8461865d9d038491c4a73 184 Gene3D G3DSA:3.40.30.10 10 177 3.3E-42 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS04680 3e53188c2ea8461865d9d038491c4a73 184 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 177 1.3E-73 T 11-11-2016 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 vm_RS04680 3e53188c2ea8461865d9d038491c4a73 184 ProSitePatterns PS00194 Thioredoxin family active site. 71 89 - T 11-11-2016 IPR017937 Thioredoxin, conserved site GO:0045454 vm_RS04680 3e53188c2ea8461865d9d038491c4a73 184 SUPERFAMILY SSF52833 46 177 1.24E-38 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 PIRSF PIRSF000185 24 449 4.0E-110 T 11-11-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 116 130 3.8E-29 T 11-11-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 373 384 3.8E-29 T 11-11-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 196 218 3.8E-29 T 11-11-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 238 258 3.8E-29 T 11-11-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 59 187 3.2E-49 T 11-11-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 SUPERFAMILY SSF51735 205 448 2.34E-72 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 205 447 7.9E-84 T 11-11-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 SMART SM00839 207 447 1.4E-85 T 11-11-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-70614 vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 Gene3D G3DSA:3.40.50.720 212 373 4.4E-61 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 Gene3D G3DSA:3.40.192.10 70 190 7.7E-61 T 11-11-2016 vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 Gene3D G3DSA:1.10.285.10 374 447 6.1E-21 T 11-11-2016 vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 Gene3D G3DSA:1.10.285.10 9 69 1.4E-23 T 11-11-2016 vm_RS06575 77b27e273bb5832b6be3cc00c56278ab 449 SUPERFAMILY SSF53223 10 199 3.17E-73 T 11-11-2016 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 Pfam PF01522 Polysaccharide deacetylase 25 129 2.3E-12 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 Gene3D G3DSA:2.10.10.20 383 426 8.1E-16 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 Gene3D G3DSA:2.10.10.20 335 377 3.9E-15 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 SUPERFAMILY SSF51055 383 426 9.16E-14 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 SUPERFAMILY SSF51055 335 377 4.45E-12 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 Gene3D G3DSA:3.20.20.370 24 97 3.1E-27 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 Gene3D G3DSA:3.20.20.370 166 332 3.1E-27 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 Pfam PF02839 Carbohydrate binding domain 333 375 2.2E-6 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 SMART SM00495 381 427 1.7 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 SMART SM00495 332 378 0.002 T 11-11-2016 IPR003610 Carbohydrate-binding module family 5/12 GO:0004553|GO:0005576|GO:0005975|GO:0030246 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 SUPERFAMILY SSF88713 190 237 1.33E-26 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 SUPERFAMILY SSF88713 24 102 1.33E-26 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 vm_RS08420 96d6dabc6a4a50ed4402f6faeebef986 427 SUPERFAMILY SSF88713 270 334 1.33E-26 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 vm_RS07230 f2c72463b401ae950dcea3727e2e9caa 392 Gene3D G3DSA:1.25.40.10 33 286 8.5E-12 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS07230 f2c72463b401ae950dcea3727e2e9caa 392 SUPERFAMILY SSF48452 244 368 1.92E-7 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS07230 f2c72463b401ae950dcea3727e2e9caa 392 Gene3D G3DSA:1.25.40.10 287 368 7.6E-5 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS07230 f2c72463b401ae950dcea3727e2e9caa 392 SUPERFAMILY SSF48452 32 232 5.26E-10 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS05740 51f2f5822d977e0560e9e30b72e8144a 758 SUPERFAMILY SSF51998 4 757 5.04E-291 T 11-11-2016 vm_RS05740 51f2f5822d977e0560e9e30b72e8144a 758 PIRSF PIRSF000379 5 758 0.0 T 11-11-2016 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 vm_RS05740 51f2f5822d977e0560e9e30b72e8144a 758 ProSitePatterns PS00850 Glycine radical domain signature. 728 736 - T 11-11-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site vm_RS05740 51f2f5822d977e0560e9e30b72e8144a 758 Gene3D G3DSA:3.20.70.20 3 757 0.0 T 11-11-2016 vm_RS05740 51f2f5822d977e0560e9e30b72e8144a 758 Pfam PF02901 Pyruvate formate lyase-like 21 612 4.7E-205 T 11-11-2016 IPR004184 Pyruvate formate lyase domain GO:0003824 vm_RS05740 51f2f5822d977e0560e9e30b72e8144a 758 TIGRFAM TIGR01255 pyr_form_ly_1: formate acetyltransferase 8 758 0.0 T 11-11-2016 IPR005949 Formate acetyltransferase GO:0005737|GO:0005975|GO:0008861 KEGG: 00620+2.3.1.54|KEGG: 00640+2.3.1.54|KEGG: 00650+2.3.1.54|MetaCyc: PWY-5480|MetaCyc: PWY-5485|MetaCyc: PWY-5493 vm_RS05740 51f2f5822d977e0560e9e30b72e8144a 758 Pfam PF01228 Glycine radical 628 739 1.6E-43 T 11-11-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 vm_RS06705 ac2fb6d365f196a0c01d1e50e5e83b3e 202 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 89 183 2.6E-11 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 vm_RS06705 ac2fb6d365f196a0c01d1e50e5e83b3e 202 SUPERFAMILY SSF56784 4 195 1.56E-33 T 11-11-2016 IPR023214 HAD-like domain vm_RS06705 ac2fb6d365f196a0c01d1e50e5e83b3e 202 Pfam PF13419 Haloacid dehalogenase-like hydrolase 83 182 9.1E-11 T 11-11-2016 IPR023214 HAD-like domain vm_RS06705 ac2fb6d365f196a0c01d1e50e5e83b3e 202 Gene3D G3DSA:3.40.50.1000 1 198 1.5E-35 T 11-11-2016 IPR023214 HAD-like domain vm_RS02265 2840b298ed59ea90a6c9f3ece8b2c280 453 SUPERFAMILY SSF54631 138 278 1.64E-28 T 11-11-2016 vm_RS02265 2840b298ed59ea90a6c9f3ece8b2c280 453 SUPERFAMILY SSF161093 280 451 2.62E-44 T 11-11-2016 vm_RS02265 2840b298ed59ea90a6c9f3ece8b2c280 453 Gene3D G3DSA:3.10.580.10 131 262 2.4E-18 T 11-11-2016 vm_RS02265 2840b298ed59ea90a6c9f3ece8b2c280 453 SMART SM00924 36 139 7.8E-36 T 11-11-2016 IPR006668 Magnesium transporter, MgtE intracellular domain vm_RS02265 2840b298ed59ea90a6c9f3ece8b2c280 453 TIGRFAM TIGR00400 mgtE: magnesium transporter 12 453 2.6E-88 T 11-11-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 vm_RS02265 2840b298ed59ea90a6c9f3ece8b2c280 453 SUPERFAMILY SSF158791 13 136 3.53E-30 T 11-11-2016 vm_RS02265 2840b298ed59ea90a6c9f3ece8b2c280 453 Gene3D G3DSA:1.10.357.20 280 451 1.1E-48 T 11-11-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 vm_RS02265 2840b298ed59ea90a6c9f3ece8b2c280 453 Gene3D G3DSA:1.25.60.10 13 130 1.7E-27 T 11-11-2016 vm_RS02265 2840b298ed59ea90a6c9f3ece8b2c280 453 Pfam PF00571 CBS domain 140 195 1.6E-4 T 11-11-2016 IPR000644 CBS domain vm_RS02265 2840b298ed59ea90a6c9f3ece8b2c280 453 Pfam PF00571 CBS domain 213 257 2.5E-4 T 11-11-2016 IPR000644 CBS domain vm_RS02265 2840b298ed59ea90a6c9f3ece8b2c280 453 Pfam PF03448 MgtE intracellular N domain 36 137 2.9E-26 T 11-11-2016 IPR006668 Magnesium transporter, MgtE intracellular domain vm_RS02265 2840b298ed59ea90a6c9f3ece8b2c280 453 Pfam PF01769 Divalent cation transporter 323 445 7.8E-23 T 11-11-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 vm_RS12345 b4d742ab9f943c6484c38abbdf0f05f1 117 SUPERFAMILY SSF50104 2 115 1.0E-48 T 11-11-2016 IPR008991 Translation protein SH3-like domain vm_RS12345 b4d742ab9f943c6484c38abbdf0f05f1 117 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 2 114 31.25 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12345 b4d742ab9f943c6484c38abbdf0f05f1 117 ProSitePatterns PS01015 Ribosomal protein L19 signature. 86 101 - T 11-11-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS12345 b4d742ab9f943c6484c38abbdf0f05f1 117 Pfam PF01245 Ribosomal protein L19 3 113 1.7E-51 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12345 b4d742ab9f943c6484c38abbdf0f05f1 117 PIRSF PIRSF002191 1 117 6.6E-52 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12345 b4d742ab9f943c6484c38abbdf0f05f1 117 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 3 113 1.2E-52 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12345 b4d742ab9f943c6484c38abbdf0f05f1 117 PRINTS PR00061 Ribosomal protein L19 signature 34 63 6.5E-42 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12345 b4d742ab9f943c6484c38abbdf0f05f1 117 PRINTS PR00061 Ribosomal protein L19 signature 4 33 6.5E-42 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12345 b4d742ab9f943c6484c38abbdf0f05f1 117 PRINTS PR00061 Ribosomal protein L19 signature 88 113 6.5E-42 T 11-11-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12490 88c353744b6c38dcac891d8aaeb20f96 376 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS12490 88c353744b6c38dcac891d8aaeb20f96 376 Pfam PF00005 ABC transporter 19 164 3.5E-36 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS12490 88c353744b6c38dcac891d8aaeb20f96 376 SUPERFAMILY SSF52540 3 246 1.42E-86 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12490 88c353744b6c38dcac891d8aaeb20f96 376 Pfam PF12857 TOBE-like domain 288 345 4.4E-14 T 11-11-2016 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 vm_RS12490 88c353744b6c38dcac891d8aaeb20f96 376 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 242 2.4E-115 T 11-11-2016 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 vm_RS12490 88c353744b6c38dcac891d8aaeb20f96 376 SMART SM00382 27 214 1.3E-17 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS12490 88c353744b6c38dcac891d8aaeb20f96 376 Gene3D G3DSA:3.40.50.300 3 244 5.2E-81 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12490 88c353744b6c38dcac891d8aaeb20f96 376 SUPERFAMILY SSF50331 239 346 7.37E-6 T 11-11-2016 IPR008995 Molybdate/tungstate binding, C-terminal vm_RS13195 0367e0776834fc2f190162e2118877e1 126 Pfam PF04379 Protein of unknown function (DUF525) 18 103 2.1E-32 T 11-11-2016 IPR007474 ApaG domain vm_RS13195 0367e0776834fc2f190162e2118877e1 126 Hamap MF_00791 Protein ApaG [apaG]. 1 126 32.345 T 11-11-2016 IPR023065 Uncharacterised protein family ApaG vm_RS13195 0367e0776834fc2f190162e2118877e1 126 SUPERFAMILY SSF110069 7 126 1.05E-47 T 11-11-2016 IPR007474 ApaG domain vm_RS13195 0367e0776834fc2f190162e2118877e1 126 Gene3D G3DSA:2.60.40.1470 7 125 4.0E-46 T 11-11-2016 IPR007474 ApaG domain vm_RS00425 93a228e0bf418a4b1ee2f08a36cb038b 249 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 10 227 3.7E-75 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 vm_RS00425 93a228e0bf418a4b1ee2f08a36cb038b 249 ProSitePatterns PS01218 TatC family signature. 155 174 - T 11-11-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site vm_RS00425 93a228e0bf418a4b1ee2f08a36cb038b 249 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 86 104 1.3E-51 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 vm_RS00425 93a228e0bf418a4b1ee2f08a36cb038b 249 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 9 36 1.3E-51 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 vm_RS00425 93a228e0bf418a4b1ee2f08a36cb038b 249 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 104 130 1.3E-51 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 vm_RS00425 93a228e0bf418a4b1ee2f08a36cb038b 249 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 155 183 1.3E-51 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 vm_RS00425 93a228e0bf418a4b1ee2f08a36cb038b 249 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 5 241 18.254 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 vm_RS00425 93a228e0bf418a4b1ee2f08a36cb038b 249 Pfam PF00902 Sec-independent protein translocase protein (TatC) 13 222 2.7E-66 T 11-11-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 Gene3D G3DSA:3.30.70.940 6 117 5.5E-44 T 11-11-2016 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 ProSitePatterns PS01014 Transcription termination factor nusG signature. 164 173 - T 11-11-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 6.8E-22 T 11-11-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 6.8E-22 T 11-11-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 PRINTS PR00338 Transcription termination factor NUSG signature 61 73 6.8E-22 T 11-11-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 SUPERFAMILY SSF50104 125 181 7.07E-20 T 11-11-2016 IPR008991 Translation protein SH3-like domain vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 SMART SM00738 6 115 1.0E-50 T 11-11-2016 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 9 181 6.4E-71 T 11-11-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 Gene3D G3DSA:2.30.30.30 120 181 6.6E-32 T 11-11-2016 IPR014722 Ribosomal protein L2 domain 2 vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 SUPERFAMILY SSF82679 6 116 4.58E-40 T 11-11-2016 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 Pfam PF00467 KOW motif 131 162 2.2E-7 T 11-11-2016 IPR005824 KOW vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 6 181 26.173 T 11-11-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 SMART SM00739 127 154 3.2E-5 T 11-11-2016 IPR005824 KOW vm_RS13995 f077bb7903556d73621a22a9f7d3134b 182 Pfam PF02357 Transcription termination factor nusG 7 112 8.3E-27 T 11-11-2016 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 vm_RS03210 4e38b09b87cdfca40b3e7e9f37902a29 241 TIGRFAM TIGR00107 deoD: purine nucleoside phosphorylase 5 234 1.1E-119 T 11-11-2016 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 vm_RS03210 4e38b09b87cdfca40b3e7e9f37902a29 241 Pfam PF01048 Phosphorylase superfamily 15 222 1.5E-40 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 vm_RS03210 4e38b09b87cdfca40b3e7e9f37902a29 241 Gene3D G3DSA:3.40.50.1580 10 233 1.0E-84 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 vm_RS03210 4e38b09b87cdfca40b3e7e9f37902a29 241 SUPERFAMILY SSF53167 3 235 1.7E-94 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 vm_RS03210 4e38b09b87cdfca40b3e7e9f37902a29 241 Hamap MF_01627 Purine nucleoside phosphorylase DeoD-type [deoD]. 2 235 51.848 T 11-11-2016 IPR004402 Purine nucleoside phosphorylase DeoD-type GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1 vm_RS03210 4e38b09b87cdfca40b3e7e9f37902a29 241 ProSitePatterns PS01232 Purine and other phosphorylases family 1 signature. 62 77 - T 11-11-2016 IPR018016 Nucleoside phosphorylase, conserved site GO:0016763 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS00955 3f479df193ebaa5977e1651cac6b9525 286 Gene3D G3DSA:3.40.50.2020 108 282 3.7E-28 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS00955 3f479df193ebaa5977e1651cac6b9525 286 SUPERFAMILY SSF53271 103 281 6.32E-38 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS00955 3f479df193ebaa5977e1651cac6b9525 286 Pfam PF00156 Phosphoribosyl transferase domain 190 280 3.1E-9 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 vm_RS14590 3e376e290bfc7ece1745df17c5aa5337 267 SUPERFAMILY SSF51215 24 142 1.28E-16 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 vm_RS14590 3e376e290bfc7ece1745df17c5aa5337 267 Gene3D G3DSA:1.10.10.60 164 219 3.7E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS14590 3e376e290bfc7ece1745df17c5aa5337 267 SUPERFAMILY SSF46689 218 263 1.52E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS14590 3e376e290bfc7ece1745df17c5aa5337 267 Pfam PF12833 Helix-turn-helix domain 188 261 2.2E-23 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS14590 3e376e290bfc7ece1745df17c5aa5337 267 SMART SM00342 182 264 5.1E-28 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS14590 3e376e290bfc7ece1745df17c5aa5337 267 SUPERFAMILY SSF46689 168 216 4.12E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS14590 3e376e290bfc7ece1745df17c5aa5337 267 Gene3D G3DSA:2.60.120.280 23 100 1.9E-11 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 vm_RS14590 3e376e290bfc7ece1745df17c5aa5337 267 Gene3D G3DSA:1.10.10.60 220 262 1.1E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS14590 3e376e290bfc7ece1745df17c5aa5337 267 Pfam PF02311 AraC-like ligand binding domain 11 143 1.7E-24 T 11-11-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 vm_RS02165 6b07dd9e19d8fe61d916a7ec925421cd 238 Gene3D G3DSA:3.40.50.300 12 224 1.6E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02165 6b07dd9e19d8fe61d916a7ec925421cd 238 SUPERFAMILY SSF52540 9 228 2.19E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02165 6b07dd9e19d8fe61d916a7ec925421cd 238 Pfam PF00005 ABC transporter 32 184 5.3E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS02165 6b07dd9e19d8fe61d916a7ec925421cd 238 SMART SM00382 39 232 3.9E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS04915 339e5f8b66a7bb3b54d7b7665d595055 196 SUPERFAMILY SSF56925 22 196 7.06E-19 T 11-11-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 vm_RS04915 339e5f8b66a7bb3b54d7b7665d595055 196 Gene3D G3DSA:2.40.160.20 41 196 1.9E-19 T 11-11-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 vm_RS04915 339e5f8b66a7bb3b54d7b7665d595055 196 Pfam PF13505 Outer membrane protein beta-barrel domain 14 161 7.5E-7 T 11-11-2016 IPR027385 Outer membrane protein beta-barrel vm_RS02060 756d9a7dbdd6c76983597e7873ac5986 37 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 37 17.137 T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02060 756d9a7dbdd6c76983597e7873ac5986 37 Pfam PF00444 Ribosomal protein L36 1 37 8.8E-19 T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02060 756d9a7dbdd6c76983597e7873ac5986 37 SUPERFAMILY SSF57840 1 37 1.02E-16 T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02060 756d9a7dbdd6c76983597e7873ac5986 37 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 36 - T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02060 756d9a7dbdd6c76983597e7873ac5986 37 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 37 3.0E-9 T 11-11-2016 vm_RS02060 756d9a7dbdd6c76983597e7873ac5986 37 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 37 4.0E-23 T 11-11-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS01060 e64f9c13ac69be48db6e6eb393c6e153 106 Gene3D G3DSA:1.10.260.40 4 77 2.8E-20 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS01060 e64f9c13ac69be48db6e6eb393c6e153 106 SUPERFAMILY SSF47413 6 75 4.22E-14 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS01060 e64f9c13ac69be48db6e6eb393c6e153 106 SMART SM00530 10 69 1.1E-12 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 vm_RS01060 e64f9c13ac69be48db6e6eb393c6e153 106 Pfam PF12844 Helix-turn-helix domain 10 70 2.7E-11 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 vm_RS11760 fb42ac89f478c8ed5ae086f2e30eeaa8 171 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 10 167 17.072 T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 vm_RS11760 fb42ac89f478c8ed5ae086f2e30eeaa8 171 Pfam PF01252 Signal peptidase (SPase) II 19 161 1.2E-36 T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 vm_RS11760 fb42ac89f478c8ed5ae086f2e30eeaa8 171 TIGRFAM TIGR00077 lspA: signal peptidase II 8 166 5.4E-51 T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 vm_RS11760 fb42ac89f478c8ed5ae086f2e30eeaa8 171 ProSitePatterns PS00855 Signal peptidases II signature. 109 121 - T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 vm_RS11760 fb42ac89f478c8ed5ae086f2e30eeaa8 171 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 142 158 1.5E-18 T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 vm_RS11760 fb42ac89f478c8ed5ae086f2e30eeaa8 171 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 58 66 1.5E-18 T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 vm_RS11760 fb42ac89f478c8ed5ae086f2e30eeaa8 171 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 106 121 1.5E-18 T 11-11-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 vm_RS12465 e1c0f5c311b6a4574938d52aec0e71d4 395 PIRSF PIRSF000726 58 386 4.7E-77 T 11-11-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS12465 e1c0f5c311b6a4574938d52aec0e71d4 395 Gene3D G3DSA:3.40.1160.10 4 246 3.5E-74 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS12465 e1c0f5c311b6a4574938d52aec0e71d4 395 Gene3D G3DSA:3.30.2130.10 278 376 1.7E-4 T 11-11-2016 vm_RS12465 e1c0f5c311b6a4574938d52aec0e71d4 395 Pfam PF00696 Amino acid kinase family 5 231 5.5E-54 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS12465 e1c0f5c311b6a4574938d52aec0e71d4 395 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 65 379 9.5E-79 T 11-11-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS12465 e1c0f5c311b6a4574938d52aec0e71d4 395 ProSitePatterns PS00324 Aspartokinase signature. 7 15 - T 11-11-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153 vm_RS12465 e1c0f5c311b6a4574938d52aec0e71d4 395 SUPERFAMILY SSF53633 6 245 9.43E-77 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS02985 5a340877f38d4f084585690078cfc13c 260 Pfam PF08478 POTRA domain, FtsQ-type 53 122 1.0E-16 T 11-11-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type vm_RS02985 5a340877f38d4f084585690078cfc13c 260 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 22 246 23.187 T 11-11-2016 IPR026579 Cell division protein FtsQ GO:0090529 vm_RS02985 5a340877f38d4f084585690078cfc13c 260 Pfam PF03799 Cell division protein FtsQ 126 238 2.0E-25 T 11-11-2016 IPR005548 Cell division protein FtsQ/DivIB vm_RS08820 9e9cb2c0aadc54e37b0cb3adf646aaaf 315 Pfam PF11383 Protein of unknown function (DUF3187) 5 314 1.2E-116 T 11-11-2016 IPR021523 Protein of unknown function DUF3187 vm_RS08820 9e9cb2c0aadc54e37b0cb3adf646aaaf 315 SUPERFAMILY SSF56935 27 230 2.33E-5 T 11-11-2016 vm_RS01435 ae7ebd9f41701d5536ab55ad68f9bc9a 200 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 13 191 2.5E-26 T 11-11-2016 IPR013046 Phage baseplate assembly protein V/Gp45 vm_RS01435 ae7ebd9f41701d5536ab55ad68f9bc9a 200 Pfam PF06890 Bacteriophage Mu Gp45 protein 21 186 6.7E-38 T 11-11-2016 IPR014462 Phage-associated protein Gp45 vm_RS01435 ae7ebd9f41701d5536ab55ad68f9bc9a 200 PIRSF PIRSF012337 1 199 2.0E-57 T 11-11-2016 IPR014462 Phage-associated protein Gp45 vm_RS13115 773f2621668fe44cdebdeefa9e8bb80a 375 Gene3D G3DSA:1.10.530.10 178 373 4.5E-42 T 11-11-2016 vm_RS13115 773f2621668fe44cdebdeefa9e8bb80a 375 Pfam PF11873 Domain of unknown function (DUF3393) 4 206 1.9E-78 T 11-11-2016 IPR024570 Murein transglycosylase-C, N-terminal vm_RS13115 773f2621668fe44cdebdeefa9e8bb80a 375 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 228 256 - T 11-11-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 vm_RS13115 773f2621668fe44cdebdeefa9e8bb80a 375 Pfam PF01464 Transglycosylase SLT domain 211 334 3.0E-29 T 11-11-2016 IPR008258 Transglycosylase SLT domain 1 vm_RS13115 773f2621668fe44cdebdeefa9e8bb80a 375 SUPERFAMILY SSF53955 206 370 5.63E-36 T 11-11-2016 IPR023346 Lysozyme-like domain vm_RS09030 21b74c630511cbaf28ccf942efcf6498 242 SUPERFAMILY SSF53335 20 242 1.38E-40 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS09030 21b74c630511cbaf28ccf942efcf6498 242 Gene3D G3DSA:3.40.50.150 19 241 3.2E-65 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS09030 21b74c630511cbaf28ccf942efcf6498 242 Hamap MF_01589 Carboxy-S-adenosyl-L-methionine synthase [cmoA]. 3 242 43.187 T 11-11-2016 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 vm_RS09030 21b74c630511cbaf28ccf942efcf6498 242 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 4 242 1.8E-118 T 11-11-2016 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 vm_RS09030 21b74c630511cbaf28ccf942efcf6498 242 Pfam PF13649 Methyltransferase domain 60 158 5.5E-13 T 11-11-2016 vm_RS09030 21b74c630511cbaf28ccf942efcf6498 242 PIRSF PIRSF006325 1 242 2.5E-128 T 11-11-2016 IPR005271 Carboxy-S-adenosyl-L-methionine synthase GO:0002098 vm_RS09615 a06f9d28a82419da44028864bd48760f 589 Pfam PF04183 IucA / IucC family 138 382 1.6E-69 T 11-11-2016 IPR007310 Aerobactin siderophore biosynthesis, IucA/IucC, N-terminal GO:0015343|GO:0019290 vm_RS09615 a06f9d28a82419da44028864bd48760f 589 Pfam PF06276 Ferric iron reductase FhuF-like transporter 404 554 6.7E-29 T 11-11-2016 IPR022770 Ferric iron reductase FhuF domain vm_RS12060 121afa16f8b113572de23c2da3bbd45e 113 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 9 113 2.6E-37 T 11-11-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 vm_RS12060 121afa16f8b113572de23c2da3bbd45e 113 Gene3D G3DSA:2.60.300.12 5 99 4.5E-32 T 11-11-2016 IPR000361 FeS cluster biogenesis vm_RS12060 121afa16f8b113572de23c2da3bbd45e 113 SUPERFAMILY SSF89360 7 99 4.12E-30 T 11-11-2016 IPR000361 FeS cluster biogenesis vm_RS12060 121afa16f8b113572de23c2da3bbd45e 113 Pfam PF01521 Iron-sulphur cluster biosynthesis 8 108 6.2E-19 T 11-11-2016 IPR000361 FeS cluster biogenesis vm_RS12060 121afa16f8b113572de23c2da3bbd45e 113 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 113 35.601 T 11-11-2016 IPR023063 FeS cluster insertion protein ErpA GO:0016226 vm_RS12060 121afa16f8b113572de23c2da3bbd45e 113 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 94 111 - T 11-11-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site vm_RS08950 056fa25335df8dbd528545844f185b4f 573 Gene3D G3DSA:3.40.50.300 339 568 6.0E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08950 056fa25335df8dbd528545844f185b4f 573 SUPERFAMILY SSF52540 331 571 1.24E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08950 056fa25335df8dbd528545844f185b4f 573 SUPERFAMILY SSF90123 7 330 3.66E-37 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 vm_RS08950 056fa25335df8dbd528545844f185b4f 573 Gene3D G3DSA:1.20.1560.10 8 328 8.1E-28 T 11-11-2016 vm_RS08950 056fa25335df8dbd528545844f185b4f 573 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS08950 056fa25335df8dbd528545844f185b4f 573 Pfam PF00005 ABC transporter 357 502 7.9E-32 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS08950 056fa25335df8dbd528545844f185b4f 573 Pfam PF00664 ABC transporter transmembrane region 28 287 6.0E-5 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 vm_RS08950 056fa25335df8dbd528545844f185b4f 573 SMART SM00382 365 552 1.4E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS08950 056fa25335df8dbd528545844f185b4f 573 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 6 533 1.4E-136 T 11-11-2016 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0006810|GO:0016021|GO:0042626 vm_RS08900 0ef2ab2b1cbd52316977887989a8223e 368 Gene3D G3DSA:3.30.200.20 13 135 9.3E-34 T 11-11-2016 vm_RS08900 0ef2ab2b1cbd52316977887989a8223e 368 SUPERFAMILY SSF56104 14 344 2.91E-67 T 11-11-2016 vm_RS08900 0ef2ab2b1cbd52316977887989a8223e 368 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 19 342 21.496 T 11-11-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 vm_RS08900 0ef2ab2b1cbd52316977887989a8223e 368 ProSitePatterns PS01057 SAICAR synthetase signature 1. 124 138 - T 11-11-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 vm_RS08900 0ef2ab2b1cbd52316977887989a8223e 368 Pfam PF01259 SAICAR synthetase 22 293 4.6E-50 T 11-11-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 vm_RS08900 0ef2ab2b1cbd52316977887989a8223e 368 TIGRFAM TIGR02735 purC_vibrio: phosphoribosylaminoimidazole-succinocarboxamide synthase 2 366 1.5E-227 T 11-11-2016 IPR014106 Phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio-type GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 vm_RS08900 0ef2ab2b1cbd52316977887989a8223e 368 Gene3D G3DSA:3.30.470.20 136 282 1.6E-43 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS00850 10d4f20ef2c94da548e06fe5f20c5ce7 144 SUPERFAMILY SSF69500 2 143 7.32E-53 T 11-11-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain vm_RS00850 10d4f20ef2c94da548e06fe5f20c5ce7 144 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 144 33.143 T 11-11-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 vm_RS00850 10d4f20ef2c94da548e06fe5f20c5ce7 144 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 2 144 5.1E-62 T 11-11-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 vm_RS00850 10d4f20ef2c94da548e06fe5f20c5ce7 144 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 3 142 4.3E-50 T 11-11-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 vm_RS00850 10d4f20ef2c94da548e06fe5f20c5ce7 144 Gene3D G3DSA:3.50.80.10 3 143 1.5E-52 T 11-11-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain vm_RS04625 241b9c5d5d4f9fe553e36042a85d8f29 379 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 3 377 39.132 T 11-11-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 vm_RS04625 241b9c5d5d4f9fe553e36042a85d8f29 379 Pfam PF01339 CheB methylesterase 194 371 4.0E-59 T 11-11-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 vm_RS04625 241b9c5d5d4f9fe553e36042a85d8f29 379 Pfam PF00072 Response regulator receiver domain 5 109 3.1E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS04625 241b9c5d5d4f9fe553e36042a85d8f29 379 Gene3D G3DSA:3.40.50.2300 2 109 2.6E-30 T 11-11-2016 vm_RS04625 241b9c5d5d4f9fe553e36042a85d8f29 379 SMART SM00448 3 126 2.9E-25 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS04625 241b9c5d5d4f9fe553e36042a85d8f29 379 Gene3D G3DSA:3.40.50.180 187 373 1.3E-73 T 11-11-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 vm_RS04625 241b9c5d5d4f9fe553e36042a85d8f29 379 PIRSF PIRSF000876 1 377 3.3E-128 T 11-11-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 vm_RS04625 241b9c5d5d4f9fe553e36042a85d8f29 379 SUPERFAMILY SSF52172 2 109 1.18E-26 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS04625 241b9c5d5d4f9fe553e36042a85d8f29 379 SUPERFAMILY SSF52738 188 373 2.88E-64 T 11-11-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 vm_RS02890 2358b0e496dbacc1c437ff3fc383722a 250 SUPERFAMILY SSF52833 108 247 5.38E-37 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS02890 2358b0e496dbacc1c437ff3fc383722a 250 ProSitePatterns PS00194 Thioredoxin family active site. 125 143 - T 11-11-2016 IPR017937 Thioredoxin, conserved site GO:0045454 vm_RS02890 2358b0e496dbacc1c437ff3fc383722a 250 SUPERFAMILY SSF54423 32 86 1.96E-12 T 11-11-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal vm_RS02890 2358b0e496dbacc1c437ff3fc383722a 250 Gene3D G3DSA:3.10.450.70 32 88 9.4E-22 T 11-11-2016 IPR009094 Disulphide bond isomerase, DsbC, N-terminal vm_RS02890 2358b0e496dbacc1c437ff3fc383722a 250 Pfam PF10411 Disulfide bond isomerase protein N-terminus 35 85 1.5E-14 T 11-11-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal vm_RS02890 2358b0e496dbacc1c437ff3fc383722a 250 Pfam PF13098 Thioredoxin-like domain 118 246 6.6E-25 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS02890 2358b0e496dbacc1c437ff3fc383722a 250 Gene3D G3DSA:3.40.30.10 113 248 2.6E-43 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS09805 1f57f90cb692ea47cfcdf6c2e9d43720 355 Gene3D G3DSA:3.40.50.1100 48 144 6.1E-23 T 11-11-2016 vm_RS09805 1f57f90cb692ea47cfcdf6c2e9d43720 355 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 36 316 2.0E-41 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS09805 1f57f90cb692ea47cfcdf6c2e9d43720 355 Gene3D G3DSA:3.40.50.1100 145 333 1.6E-36 T 11-11-2016 vm_RS09805 1f57f90cb692ea47cfcdf6c2e9d43720 355 SUPERFAMILY SSF53686 23 335 7.2E-70 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS00390 27ebba7f9e0a7280eba1083d685e892a 303 Pfam PF00892 EamA-like transporter family 155 286 6.8E-18 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS00390 27ebba7f9e0a7280eba1083d685e892a 303 Pfam PF00892 EamA-like transporter family 9 141 4.0E-18 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS00390 27ebba7f9e0a7280eba1083d685e892a 303 SUPERFAMILY SSF103481 189 292 1.03E-11 T 11-11-2016 vm_RS00390 27ebba7f9e0a7280eba1083d685e892a 303 SUPERFAMILY SSF103481 43 144 5.49E-13 T 11-11-2016 vm_RS09225 318795a86d7c20b76885c73ed49fd03c 205 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 194 2.0E-105 T 11-11-2016 IPR007451 Uncharacterised protein family UPF0274 vm_RS09225 318795a86d7c20b76885c73ed49fd03c 205 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 203 35.495 T 11-11-2016 IPR007451 Uncharacterised protein family UPF0274 vm_RS09225 318795a86d7c20b76885c73ed49fd03c 205 SUPERFAMILY SSF101322 2 204 1.7E-79 T 11-11-2016 IPR007451 Uncharacterised protein family UPF0274 vm_RS09225 318795a86d7c20b76885c73ed49fd03c 205 Gene3D G3DSA:1.10.3890.10 3 205 4.6E-87 T 11-11-2016 IPR007451 Uncharacterised protein family UPF0274 vm_RS09225 318795a86d7c20b76885c73ed49fd03c 205 Pfam PF04356 Protein of unknown function (DUF489) 7 195 9.4E-76 T 11-11-2016 IPR007451 Uncharacterised protein family UPF0274 vm_RS10075 1b29b36bc7c1671ce0eb6304a9c901f5 348 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 8 348 1.7E-146 T 11-11-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 vm_RS10075 1b29b36bc7c1671ce0eb6304a9c901f5 348 Hamap MF_00462 Electron transport complex subunit RsxD [rsxD]. 3 348 27.89 T 11-11-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 vm_RS10075 1b29b36bc7c1671ce0eb6304a9c901f5 348 Pfam PF03116 NQR2, RnfD, RnfE family 6 347 7.9E-109 T 11-11-2016 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 vm_RS04565 a70d22f745448f0bca433d60a21c5b4b 145 SUPERFAMILY SSF54197 4 135 3.19E-33 T 11-11-2016 IPR011146 HIT-like domain GO:0003824 vm_RS04565 a70d22f745448f0bca433d60a21c5b4b 145 Gene3D G3DSA:3.30.428.10 3 136 1.2E-35 T 11-11-2016 IPR011146 HIT-like domain GO:0003824 vm_RS04565 a70d22f745448f0bca433d60a21c5b4b 145 PIRSF PIRSF000714 3 139 1.1E-50 T 11-11-2016 IPR026026 Histidine triad hydrolase, Hint-type vm_RS04565 a70d22f745448f0bca433d60a21c5b4b 145 Pfam PF01230 HIT domain 11 101 7.5E-19 T 11-11-2016 IPR001310 Histidine triad (HIT) protein vm_RS10875 bfeb864e7beb6ebd7c040094914ab45c 144 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 10 135 3.0E-31 T 11-11-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain vm_RS10875 bfeb864e7beb6ebd7c040094914ab45c 144 Gene3D G3DSA:3.30.530.20 1 143 1.7E-48 T 11-11-2016 IPR023393 START-like domain vm_RS10875 bfeb864e7beb6ebd7c040094914ab45c 144 SUPERFAMILY SSF55961 1 143 9.78E-35 T 11-11-2016 vm_RS08705 58107f715350e42f431701632865f46d 295 PIRSF PIRSF006334 14 295 5.1E-108 T 11-11-2016 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 vm_RS08705 58107f715350e42f431701632865f46d 295 Hamap MF_01558 Cytidine deaminase [cdd]. 1 293 49.285 T 11-11-2016 IPR020797 Cytidine deaminase, bacteria GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 vm_RS08705 58107f715350e42f431701632865f46d 295 SUPERFAMILY SSF53927 153 283 2.68E-36 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 vm_RS08705 58107f715350e42f431701632865f46d 295 SUPERFAMILY SSF53927 1 147 3.96E-41 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 vm_RS08705 58107f715350e42f431701632865f46d 295 TIGRFAM TIGR01355 cyt_deam_dimer: cytidine deaminase 29 295 1.9E-111 T 11-11-2016 IPR006263 Cytidine deaminase, homodimeric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 vm_RS08705 58107f715350e42f431701632865f46d 295 Gene3D G3DSA:3.40.140.10 32 174 4.9E-43 T 11-11-2016 vm_RS08705 58107f715350e42f431701632865f46d 295 Gene3D G3DSA:3.40.140.10 184 288 3.0E-24 T 11-11-2016 vm_RS08705 58107f715350e42f431701632865f46d 295 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 62 140 1.1E-12 T 11-11-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 vm_RS08705 58107f715350e42f431701632865f46d 295 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 102 136 - T 11-11-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 vm_RS08705 58107f715350e42f431701632865f46d 295 Pfam PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region 157 277 9.1E-42 T 11-11-2016 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199 vm_RS03500 7bf9b829cd2d8b89ec47a97dad8b604e 362 Gene3D G3DSA:3.40.630.10 42 241 2.8E-27 T 11-11-2016 vm_RS03500 7bf9b829cd2d8b89ec47a97dad8b604e 362 PIRSF PIRSF039012 13 334 3.1E-94 T 11-11-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 vm_RS03500 7bf9b829cd2d8b89ec47a97dad8b604e 362 SUPERFAMILY SSF53187 34 328 2.28E-77 T 11-11-2016 vm_RS03500 7bf9b829cd2d8b89ec47a97dad8b604e 362 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 59 326 1.1E-69 T 11-11-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 vm_RS03500 7bf9b829cd2d8b89ec47a97dad8b604e 362 Gene3D G3DSA:2.40.50.100 260 322 2.5E-7 T 11-11-2016 vm_RS05480 3a0989d928cfce743e040ba57239e81a 703 Gene3D G3DSA:2.120.10.30 155 239 7.8E-7 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like vm_RS05480 3a0989d928cfce743e040ba57239e81a 703 Gene3D G3DSA:2.120.10.30 39 101 7.8E-7 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like vm_RS05480 3a0989d928cfce743e040ba57239e81a 703 TIGRFAM TIGR04456 LruC_dom: LruC domain 440 691 1.3E-82 T 11-11-2016 IPR031025 LruC domain vm_RS05480 3a0989d928cfce743e040ba57239e81a 703 Pfam PF16130 Domain of unknown function (DUF4842) 472 690 2.6E-55 T 11-11-2016 IPR032295 Domain of unknown function DUF4842 vm_RS05480 3a0989d928cfce743e040ba57239e81a 703 SUPERFAMILY SSF82171 319 389 2.55E-6 T 11-11-2016 vm_RS05480 3a0989d928cfce743e040ba57239e81a 703 SUPERFAMILY SSF82171 416 486 2.55E-6 T 11-11-2016 vm_RS05480 3a0989d928cfce743e040ba57239e81a 703 SUPERFAMILY SSF82171 151 232 2.55E-6 T 11-11-2016 vm_RS05480 3a0989d928cfce743e040ba57239e81a 703 SUPERFAMILY SSF63829 44 246 1.24E-11 T 11-11-2016 vm_RS04430 3298e3a54dd1046c9e74738657ee3ee7 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.4E-20 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS04430 3298e3a54dd1046c9e74738657ee3ee7 292 Gene3D G3DSA:1.10.10.10 1 86 2.5E-29 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS04430 3298e3a54dd1046c9e74738657ee3ee7 292 Gene3D G3DSA:3.40.190.10 174 260 3.2E-21 T 11-11-2016 vm_RS04430 3298e3a54dd1046c9e74738657ee3ee7 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.8E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS04430 3298e3a54dd1046c9e74738657ee3ee7 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.8E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS04430 3298e3a54dd1046c9e74738657ee3ee7 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.8E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS04430 3298e3a54dd1046c9e74738657ee3ee7 292 SUPERFAMILY SSF46785 1 86 1.2E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS04430 3298e3a54dd1046c9e74738657ee3ee7 292 SUPERFAMILY SSF53850 89 290 1.17E-34 T 11-11-2016 vm_RS04430 3298e3a54dd1046c9e74738657ee3ee7 292 Pfam PF03466 LysR substrate binding domain 87 290 1.1E-40 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS04430 3298e3a54dd1046c9e74738657ee3ee7 292 Gene3D G3DSA:3.40.190.10 89 173 9.7E-12 T 11-11-2016 vm_RS06825 3fbb8409ffb07a508c5dc30a0c094fb5 961 Pfam PF00202 Aminotransferase class-III 51 464 6.5E-93 T 11-11-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 vm_RS06825 3fbb8409ffb07a508c5dc30a0c094fb5 961 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 780 801 - T 11-11-2016 IPR021115 Pyridoxal-phosphate binding site GO:0016831 vm_RS06825 3fbb8409ffb07a508c5dc30a0c094fb5 961 SUPERFAMILY SSF53383 516 959 4.52E-111 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS06825 3fbb8409ffb07a508c5dc30a0c094fb5 961 Gene3D G3DSA:3.90.1150.10 846 959 1.7E-41 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS06825 3fbb8409ffb07a508c5dc30a0c094fb5 961 SUPERFAMILY SSF53383 42 464 2.7E-113 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS06825 3fbb8409ffb07a508c5dc30a0c094fb5 961 Gene3D G3DSA:3.90.1150.10 339 463 7.5E-42 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS06825 3fbb8409ffb07a508c5dc30a0c094fb5 961 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 34 465 8.6E-157 T 11-11-2016 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761 vm_RS06825 3fbb8409ffb07a508c5dc30a0c094fb5 961 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 533 893 2.1E-65 T 11-11-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 vm_RS06825 3fbb8409ffb07a508c5dc30a0c094fb5 961 Gene3D G3DSA:1.20.1650.10 464 561 1.6E-40 T 11-11-2016 vm_RS06825 3fbb8409ffb07a508c5dc30a0c094fb5 961 Gene3D G3DSA:3.40.640.10 572 845 1.2E-88 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS06825 3fbb8409ffb07a508c5dc30a0c094fb5 961 Gene3D G3DSA:3.40.640.10 88 338 2.8E-66 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS00510 a12cc50039e35f47ecbef2acd76a0496 219 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 11 194 1.1E-71 T 11-11-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 vm_RS00510 a12cc50039e35f47ecbef2acd76a0496 219 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 15 198 26.814 T 11-11-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 vm_RS00510 a12cc50039e35f47ecbef2acd76a0496 219 SUPERFAMILY SSF52540 15 198 3.95E-33 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00510 a12cc50039e35f47ecbef2acd76a0496 219 Gene3D G3DSA:3.40.50.300 7 198 1.3E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS00510 a12cc50039e35f47ecbef2acd76a0496 219 Pfam PF01926 50S ribosome-binding GTPase 29 147 6.2E-19 T 11-11-2016 IPR006073 GTP binding domain GO:0005525 vm_RS08525 46afd574d7117b3d879da46f2230af4a 299 SUPERFAMILY SSF46689 191 242 4.38E-8 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS08525 46afd574d7117b3d879da46f2230af4a 299 Pfam PF12833 Helix-turn-helix domain 214 293 6.2E-23 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS08525 46afd574d7117b3d879da46f2230af4a 299 Gene3D G3DSA:1.10.10.60 245 294 6.4E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS08525 46afd574d7117b3d879da46f2230af4a 299 SUPERFAMILY SSF46689 245 295 6.72E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS08525 46afd574d7117b3d879da46f2230af4a 299 Gene3D G3DSA:1.10.10.60 187 244 5.2E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS08525 46afd574d7117b3d879da46f2230af4a 299 SMART SM00342 208 291 1.4E-23 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS11230 1ee4f435c09f01c24fdd93d1a47ed072 509 Gene3D G3DSA:3.40.810.20 240 480 9.4E-78 T 11-11-2016 vm_RS11230 1ee4f435c09f01c24fdd93d1a47ed072 509 SUPERFAMILY SSF100950 4 237 9.22E-77 T 11-11-2016 vm_RS11230 1ee4f435c09f01c24fdd93d1a47ed072 509 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 42 506 4.0E-266 T 11-11-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 vm_RS11230 1ee4f435c09f01c24fdd93d1a47ed072 509 Gene3D G3DSA:3.40.1080.10 3 237 6.5E-105 T 11-11-2016 vm_RS11230 1ee4f435c09f01c24fdd93d1a47ed072 509 PIRSF PIRSF009451 1 508 1.1E-267 T 11-11-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 vm_RS11230 1ee4f435c09f01c24fdd93d1a47ed072 509 SUPERFAMILY SSF100950 240 506 1.19E-62 T 11-11-2016 vm_RS11230 1ee4f435c09f01c24fdd93d1a47ed072 509 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 37 507 5.5E-236 T 11-11-2016 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 vm_RS15035 97f07896a35e60606b9ed33827fb77e7 404 Gene3D G3DSA:1.10.150.130 122 200 1.4E-5 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal vm_RS15035 97f07896a35e60606b9ed33827fb77e7 404 Pfam PF00589 Phage integrase family 207 368 1.6E-19 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS15035 97f07896a35e60606b9ed33827fb77e7 404 Pfam PF13102 Phage integrase SAM-like domain 4 150 4.1E-19 T 11-11-2016 IPR025269 Phage integrase SAM-like domain vm_RS15035 97f07896a35e60606b9ed33827fb77e7 404 SUPERFAMILY SSF56349 95 376 2.3E-50 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS15035 97f07896a35e60606b9ed33827fb77e7 404 Gene3D G3DSA:1.10.443.10 204 384 9.2E-32 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS14845 086564576512ac974e7683daa65d0581 177 Gene3D G3DSA:1.10.520.20 3 105 4.4E-34 T 11-11-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210 vm_RS14845 086564576512ac974e7683daa65d0581 177 PRINTS PR00125 ATP synthase delta subunit signature 135 150 8.8E-26 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 vm_RS14845 086564576512ac974e7683daa65d0581 177 PRINTS PR00125 ATP synthase delta subunit signature 7 26 8.8E-26 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 vm_RS14845 086564576512ac974e7683daa65d0581 177 PRINTS PR00125 ATP synthase delta subunit signature 150 168 8.8E-26 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 vm_RS14845 086564576512ac974e7683daa65d0581 177 PRINTS PR00125 ATP synthase delta subunit signature 85 99 8.8E-26 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 vm_RS14845 086564576512ac974e7683daa65d0581 177 PRINTS PR00125 ATP synthase delta subunit signature 74 85 8.8E-26 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 vm_RS14845 086564576512ac974e7683daa65d0581 177 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 7 175 1.7E-60 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 vm_RS14845 086564576512ac974e7683daa65d0581 177 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 137 156 - T 11-11-2016 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 Reactome: R-HSA-163210 vm_RS14845 086564576512ac974e7683daa65d0581 177 SUPERFAMILY SSF47928 3 105 2.48E-26 T 11-11-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain Reactome: R-HSA-163210 vm_RS14845 086564576512ac974e7683daa65d0581 177 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 175 6.2E-51 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 vm_RS14845 086564576512ac974e7683daa65d0581 177 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 177 18.231 T 11-11-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 Reactome: R-HSA-163210 vm_RS13730 84dbd0c869bdbe4e29abb3925b6d384f 75 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 21.803 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13730 84dbd0c869bdbe4e29abb3925b6d384f 75 SUPERFAMILY SSF46911 3 74 3.66E-30 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13730 84dbd0c869bdbe4e29abb3925b6d384f 75 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 11-11-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13730 84dbd0c869bdbe4e29abb3925b6d384f 75 Pfam PF01084 Ribosomal protein S18 19 68 2.6E-26 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13730 84dbd0c869bdbe4e29abb3925b6d384f 75 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 73 2.5E-38 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13730 84dbd0c869bdbe4e29abb3925b6d384f 75 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 73 1.0E-23 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13730 84dbd0c869bdbe4e29abb3925b6d384f 75 Gene3D G3DSA:4.10.640.10 8 74 6.1E-34 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13730 84dbd0c869bdbe4e29abb3925b6d384f 75 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 4.4E-19 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13730 84dbd0c869bdbe4e29abb3925b6d384f 75 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 4.4E-19 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13730 84dbd0c869bdbe4e29abb3925b6d384f 75 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 4.4E-19 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13730 84dbd0c869bdbe4e29abb3925b6d384f 75 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 4.4E-19 T 11-11-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS14200 a70691210f49fb4623e536cfc7f30c0b 458 Pfam PF02447 GntP family permease 13 456 1.4E-118 T 11-11-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 vm_RS14200 a70691210f49fb4623e536cfc7f30c0b 458 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 16 457 7.2E-106 T 11-11-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 vm_RS14200 a70691210f49fb4623e536cfc7f30c0b 458 PIRSF PIRSF002746 8 458 4.7E-145 T 11-11-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 vm_RS02145 9780056b5f2e797f25d0bc941a6ffd7e 215 Gene3D G3DSA:3.40.50.300 17 212 6.9E-91 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02145 9780056b5f2e797f25d0bc941a6ffd7e 215 Pfam PF01583 Adenylylsulphate kinase 38 191 9.3E-72 T 11-11-2016 vm_RS02145 9780056b5f2e797f25d0bc941a6ffd7e 215 TIGRFAM TIGR00455 apsK: adenylyl-sulfate kinase 21 203 5.6E-83 T 11-11-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 vm_RS02145 9780056b5f2e797f25d0bc941a6ffd7e 215 Hamap MF_00065 Adenylyl-sulfate kinase [cysC]. 37 209 38.21 T 11-11-2016 IPR002891 Adenylyl-sulfate kinase GO:0000103|GO:0004020|GO:0005524 KEGG: 00230+2.7.1.25|KEGG: 00920+2.7.1.25|MetaCyc: PWY-5340|Reactome: R-HSA-174362|Reactome: R-HSA-2408550 vm_RS02145 9780056b5f2e797f25d0bc941a6ffd7e 215 SUPERFAMILY SSF52540 34 209 6.38E-40 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08210 4945fe6ba2ded77177607fcdca3000f1 1018 SUPERFAMILY SSF53955 151 371 5.34E-9 T 11-11-2016 IPR023346 Lysozyme-like domain vm_RS08210 4945fe6ba2ded77177607fcdca3000f1 1018 Pfam PF00912 Transglycosylase 143 339 1.1E-22 T 11-11-2016 IPR001264 Glycosyl transferase, family 51 vm_RS08210 4945fe6ba2ded77177607fcdca3000f1 1018 Gene3D G3DSA:3.40.710.10 831 991 7.3E-44 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS08210 4945fe6ba2ded77177607fcdca3000f1 1018 Gene3D G3DSA:3.40.710.10 562 661 7.3E-44 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS08210 4945fe6ba2ded77177607fcdca3000f1 1018 Gene3D G3DSA:3.40.710.10 364 515 7.3E-44 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS08210 4945fe6ba2ded77177607fcdca3000f1 1018 SUPERFAMILY SSF56601 564 627 7.16E-6 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS08210 4945fe6ba2ded77177607fcdca3000f1 1018 Gene3D G3DSA:1.10.3810.10 155 363 2.7E-7 T 11-11-2016 vm_RS08210 4945fe6ba2ded77177607fcdca3000f1 1018 SUPERFAMILY SSF56601 734 1005 7.43E-26 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS07865 b55f0caa8420e318914f8870260ab100 562 Pfam PF00672 HAMP domain 214 282 2.4E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS07865 b55f0caa8420e318914f8870260ab100 562 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 321 350 1.2E-26 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS07865 b55f0caa8420e318914f8870260ab100 562 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 398 425 1.2E-26 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS07865 b55f0caa8420e318914f8870260ab100 562 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 427 456 1.2E-26 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS07865 b55f0caa8420e318914f8870260ab100 562 Gene3D G3DSA:1.10.287.950 315 528 8.0E-51 T 11-11-2016 vm_RS07865 b55f0caa8420e318914f8870260ab100 562 SMART SM00283 300 561 5.3E-59 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS07865 b55f0caa8420e318914f8870260ab100 562 SMART SM00304 233 285 8.5E-12 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS07865 b55f0caa8420e318914f8870260ab100 562 SUPERFAMILY SSF58104 253 560 1.2E-66 T 11-11-2016 vm_RS07865 b55f0caa8420e318914f8870260ab100 562 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 362 560 1.5E-45 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 559 665 5.4E-20 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 PRINTS PR00344 Bacterial sensor protein C-terminal signature 650 663 2.6E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 PRINTS PR00344 Bacterial sensor protein C-terminal signature 626 644 2.6E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 PRINTS PR00344 Bacterial sensor protein C-terminal signature 615 625 2.6E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 PRINTS PR00344 Bacterial sensor protein C-terminal signature 597 611 2.6E-18 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 SUPERFAMILY SSF55874 502 664 1.7E-36 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 SUPERFAMILY SSF103190 150 307 1.18E-14 T 11-11-2016 IPR029151 Periplasmic sensor domain-like vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 Pfam PF00672 HAMP domain 323 393 2.8E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 Gene3D G3DSA:3.30.565.10 498 666 6.5E-38 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 Pfam PF00512 His Kinase A (phospho-acceptor) domain 445 510 2.4E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 Gene3D G3DSA:1.10.287.130 440 497 1.8E-9 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 SMART SM00387 555 666 1.6E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 SMART SM00388 445 512 1.0E-8 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 Pfam PF17202 Single cache domain 3 201 314 1.2E-25 T 11-11-2016 IPR033463 Single cache domain 3 vm_RS07325 2d5fda3fa56feca6e7a16ff2d682593b 677 SUPERFAMILY SSF47384 440 509 5.3E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS08590 dfcce22f69ca28cf5f5b9678b6d651be 245 SUPERFAMILY SSF53335 25 225 2.89E-46 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS08590 dfcce22f69ca28cf5f5b9678b6d651be 245 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 19 245 38.708 T 11-11-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 vm_RS08590 dfcce22f69ca28cf5f5b9678b6d651be 245 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 21 239 1.6E-88 T 11-11-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|Reactome: R-HSA-2142789 vm_RS08590 dfcce22f69ca28cf5f5b9678b6d651be 245 Pfam PF13489 Methyltransferase domain 62 207 4.9E-26 T 11-11-2016 vm_RS08590 dfcce22f69ca28cf5f5b9678b6d651be 245 Gene3D G3DSA:3.40.50.150 33 230 4.8E-48 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS05125 4f11b4cf2ac3f7c23fc786beca3598e8 180 SUPERFAMILY SSF51182 53 178 6.6E-20 T 11-11-2016 IPR011051 RmlC-like cupin domain vm_RS05125 4f11b4cf2ac3f7c23fc786beca3598e8 180 Gene3D G3DSA:1.10.260.40 5 75 1.1E-25 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS05125 4f11b4cf2ac3f7c23fc786beca3598e8 180 Pfam PF07883 Cupin domain 124 170 2.2E-7 T 11-11-2016 IPR013096 Cupin 2, conserved barrel vm_RS05125 4f11b4cf2ac3f7c23fc786beca3598e8 180 Gene3D G3DSA:2.60.120.10 87 179 1.4E-33 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS05125 4f11b4cf2ac3f7c23fc786beca3598e8 180 SMART SM00530 13 68 7.3E-13 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 vm_RS05125 4f11b4cf2ac3f7c23fc786beca3598e8 180 SUPERFAMILY SSF47413 5 72 1.05E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS05125 4f11b4cf2ac3f7c23fc786beca3598e8 180 Pfam PF01381 Helix-turn-helix 14 64 1.4E-13 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 vm_RS08060 34ca8be7c64242235c074b2309402d63 467 SMART SM00283 205 466 7.2E-53 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS08060 34ca8be7c64242235c074b2309402d63 467 SUPERFAMILY SSF58104 157 466 6.93E-67 T 11-11-2016 vm_RS08060 34ca8be7c64242235c074b2309402d63 467 Gene3D G3DSA:1.10.287.950 220 434 7.9E-53 T 11-11-2016 vm_RS08060 34ca8be7c64242235c074b2309402d63 467 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 270 462 2.9E-40 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS00475 4f71d0f8034cccb303bef54abf757870 106 Pfam PF00581 Rhodanese-like domain 10 98 1.2E-13 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS00475 4f71d0f8034cccb303bef54abf757870 106 Gene3D G3DSA:3.40.250.10 3 104 4.1E-29 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS00475 4f71d0f8034cccb303bef54abf757870 106 SUPERFAMILY SSF52821 1 104 1.15E-28 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS00475 4f71d0f8034cccb303bef54abf757870 106 SMART SM00450 7 102 8.7E-19 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS00475 4f71d0f8034cccb303bef54abf757870 106 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 106 33.12 T 11-11-2016 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 vm_RS02680 2a1b8815dc52c800ba89ff12dbce8b03 427 Gene3D G3DSA:2.40.170.20 158 239 0.001 T 11-11-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 vm_RS02680 2a1b8815dc52c800ba89ff12dbce8b03 427 Gene3D G3DSA:2.40.160.10 273 395 7.7E-6 T 11-11-2016 IPR023614 Porin domain vm_RS02680 2a1b8815dc52c800ba89ff12dbce8b03 427 SUPERFAMILY SSF56935 269 339 4.76E-22 T 11-11-2016 vm_RS02680 2a1b8815dc52c800ba89ff12dbce8b03 427 SUPERFAMILY SSF56935 367 427 4.76E-22 T 11-11-2016 vm_RS02680 2a1b8815dc52c800ba89ff12dbce8b03 427 SUPERFAMILY SSF56935 29 238 4.76E-22 T 11-11-2016 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 SUPERFAMILY SSF55174 320 394 1.77E-15 T 11-11-2016 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 11-11-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 Pfam PF00579 tRNA synthetases class I (W and Y) 30 317 2.6E-80 T 11-11-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 Gene3D G3DSA:3.40.50.620 11 227 3.1E-83 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 Gene3D G3DSA:1.10.240.10 228 326 1.3E-37 T 11-11-2016 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 SUPERFAMILY SSF52374 6 315 1.18E-97 T 11-11-2016 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 Gene3D G3DSA:3.10.290.10 327 393 3.8E-23 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 161 176 1.5E-25 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 1.5E-25 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 178 200 1.5E-25 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 211 223 1.5E-25 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 4 395 8.4E-130 T 11-11-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 394 48.322 T 11-11-2016 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 vm_RS12040 140d988033fe0db1bcc68a80a789ee7e 395 SMART SM00363 334 395 0.0025 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS10750 9601e5758827013200992fedcd240315 85 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 80 27.595 T 11-11-2016 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS10750 9601e5758827013200992fedcd240315 85 Pfam PF01197 Ribosomal protein L31 1 78 1.3E-27 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS10750 9601e5758827013200992fedcd240315 85 PRINTS PR01249 Ribosomal protein L31 signature 44 59 2.4E-16 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS10750 9601e5758827013200992fedcd240315 85 PRINTS PR01249 Ribosomal protein L31 signature 59 77 2.4E-16 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS10750 9601e5758827013200992fedcd240315 85 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.4E-16 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS10750 9601e5758827013200992fedcd240315 85 SUPERFAMILY SSF143800 1 80 3.57E-23 T 11-11-2016 vm_RS10750 9601e5758827013200992fedcd240315 85 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 79 9.9E-20 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS10750 9601e5758827013200992fedcd240315 85 ProSitePatterns PS01143 Ribosomal protein L31 signature. 48 69 - T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 PRINTS PR00419 Adrenodoxin reductase family signature 148 170 2.2E-36 T 11-11-2016 vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 PRINTS PR00419 Adrenodoxin reductase family signature 288 302 2.2E-36 T 11-11-2016 vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 PRINTS PR00419 Adrenodoxin reductase family signature 213 223 2.2E-36 T 11-11-2016 vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 PRINTS PR00419 Adrenodoxin reductase family signature 322 335 2.2E-36 T 11-11-2016 vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 PRINTS PR00419 Adrenodoxin reductase family signature 171 184 2.2E-36 T 11-11-2016 vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 Gene3D G3DSA:3.40.50.720 399 468 1.3E-34 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 Gene3D G3DSA:3.40.50.720 150 236 1.3E-34 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 147 457 6.3E-24 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 SUPERFAMILY SSF46548 6 157 1.67E-41 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 SUPERFAMILY SSF51971 145 399 9.42E-69 T 11-11-2016 vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 25 134 7.3E-39 T 11-11-2016 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 Gene3D G3DSA:3.50.50.60 237 398 4.3E-50 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 Gene3D G3DSA:1.10.1060.10 5 149 1.8E-47 T 11-11-2016 vm_RS03070 9ce06105b4a08778af86fe09c3978e58 470 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 6 470 1.8E-251 T 11-11-2016 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 vm_RS10205 9bd5a924fd8f481124a9d1728c164198 214 Hamap MF_00235 Adenylate kinase [adk]. 1 214 52.31 T 11-11-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 vm_RS10205 9bd5a924fd8f481124a9d1728c164198 214 Pfam PF00406 Adenylate kinase 5 185 6.8E-60 T 11-11-2016 vm_RS10205 9bd5a924fd8f481124a9d1728c164198 214 SUPERFAMILY SSF52540 1 213 2.61E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10205 9bd5a924fd8f481124a9d1728c164198 214 PRINTS PR00094 Adenylate kinase signature 4 17 7.4E-36 T 11-11-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 vm_RS10205 9bd5a924fd8f481124a9d1728c164198 214 PRINTS PR00094 Adenylate kinase signature 32 46 7.4E-36 T 11-11-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 vm_RS10205 9bd5a924fd8f481124a9d1728c164198 214 PRINTS PR00094 Adenylate kinase signature 173 187 7.4E-36 T 11-11-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 vm_RS10205 9bd5a924fd8f481124a9d1728c164198 214 PRINTS PR00094 Adenylate kinase signature 156 171 7.4E-36 T 11-11-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 vm_RS10205 9bd5a924fd8f481124a9d1728c164198 214 PRINTS PR00094 Adenylate kinase signature 81 97 7.4E-36 T 11-11-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 vm_RS10205 9bd5a924fd8f481124a9d1728c164198 214 Gene3D G3DSA:3.40.50.300 1 212 8.8E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10205 9bd5a924fd8f481124a9d1728c164198 214 TIGRFAM TIGR01351 adk: adenylate kinase 2 213 1.1E-75 T 11-11-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219 vm_RS10205 9bd5a924fd8f481124a9d1728c164198 214 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 11-11-2016 vm_RS10205 9bd5a924fd8f481124a9d1728c164198 214 Pfam PF05191 Adenylate kinase, active site lid 123 158 7.4E-15 T 11-11-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219 vm_RS11030 b6da576c9b784431fca7ca604a29bfa3 96 SUPERFAMILY SSF46785 4 81 7.37E-6 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11030 b6da576c9b784431fca7ca604a29bfa3 96 Gene3D G3DSA:1.10.10.10 5 76 1.2E-4 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 TIGRFAM TIGR01083 nth: endonuclease III 5 194 2.3E-89 T 11-11-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 PIRSF PIRSF001435 1 210 7.6E-50 T 11-11-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 Pfam PF00633 Helix-hairpin-helix motif 99 127 2.7E-8 T 11-11-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 Reactome: R-HSA-110357 vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 6.9E-19 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 Gene3D G3DSA:1.10.1670.10 123 208 1.0E-34 T 11-11-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 SUPERFAMILY SSF48150 4 207 2.36E-71 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 11-11-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 11-11-2016 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 SMART SM00478 38 185 2.0E-53 T 11-11-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 SMART SM00525 186 206 4.4E-5 T 11-11-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 187 203 1.1E-4 T 11-11-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 Gene3D G3DSA:1.10.340.30 23 122 7.0E-34 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 vm_RS10090 19ba6e015fd79842b151c504ba5c4228 213 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.649 T 11-11-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 vm_RS05885 28542c0c3d3c0119b2f2879baaf02325 441 Pfam PF07676 WD40-like Beta Propeller Repeat 291 327 3.1E-14 T 11-11-2016 IPR011659 WD40-like Beta Propeller vm_RS05885 28542c0c3d3c0119b2f2879baaf02325 441 Pfam PF07676 WD40-like Beta Propeller Repeat 249 283 1.1E-7 T 11-11-2016 IPR011659 WD40-like Beta Propeller vm_RS05885 28542c0c3d3c0119b2f2879baaf02325 441 Pfam PF07676 WD40-like Beta Propeller Repeat 213 239 2.2E-8 T 11-11-2016 IPR011659 WD40-like Beta Propeller vm_RS05885 28542c0c3d3c0119b2f2879baaf02325 441 SUPERFAMILY SSF52964 20 172 1.01E-40 T 11-11-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 vm_RS05885 28542c0c3d3c0119b2f2879baaf02325 441 Pfam PF04052 TolB amino-terminal domain 15 117 8.8E-34 T 11-11-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 vm_RS05885 28542c0c3d3c0119b2f2879baaf02325 441 SUPERFAMILY SSF69304 167 439 1.83E-57 T 11-11-2016 vm_RS05885 28542c0c3d3c0119b2f2879baaf02325 441 Hamap MF_00671 Protein TolB [tolB]. 1 437 35.376 T 11-11-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 vm_RS05885 28542c0c3d3c0119b2f2879baaf02325 441 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 7 438 4.8E-171 T 11-11-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 vm_RS05885 28542c0c3d3c0119b2f2879baaf02325 441 Gene3D G3DSA:2.130.10.10 162 439 7.8E-80 T 11-11-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 vm_RS05885 28542c0c3d3c0119b2f2879baaf02325 441 Gene3D G3DSA:3.40.50.10070 15 161 5.0E-52 T 11-11-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 vm_RS02710 fec7771cb3e78bf5b82d9ec602c1607c 270 SUPERFAMILY SSF101386 138 240 7.29E-25 T 11-11-2016 vm_RS02710 fec7771cb3e78bf5b82d9ec602c1607c 270 Gene3D G3DSA:1.10.287.1080 7 73 1.8E-7 T 11-11-2016 vm_RS02710 fec7771cb3e78bf5b82d9ec602c1607c 270 Gene3D G3DSA:1.10.287.1080 134 223 2.8E-12 T 11-11-2016 vm_RS02710 fec7771cb3e78bf5b82d9ec602c1607c 270 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 171 229 3.6E-7 T 11-11-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core vm_RS02710 fec7771cb3e78bf5b82d9ec602c1607c 270 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 28 101 1.1E-26 T 11-11-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core vm_RS02710 fec7771cb3e78bf5b82d9ec602c1607c 270 SUPERFAMILY SSF101386 3 104 6.25E-24 T 11-11-2016 vm_RS02710 fec7771cb3e78bf5b82d9ec602c1607c 270 TIGRFAM TIGR00444 mazG: MazG family protein 11 260 7.1E-105 T 11-11-2016 IPR011551 NTP pyrophosphohydrolase MazG vm_RS02915 ded0694e91d032250f08281c16593e6c 886 Gene3D G3DSA:3.40.50.920 706 885 3.6E-75 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 vm_RS02915 ded0694e91d032250f08281c16593e6c 886 SUPERFAMILY SSF52518 475 700 2.83E-96 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS02915 ded0694e91d032250f08281c16593e6c 886 SUPERFAMILY SSF52518 56 469 8.73E-140 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS02915 ded0694e91d032250f08281c16593e6c 886 Gene3D G3DSA:3.40.50.970 55 469 2.0E-153 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS02915 ded0694e91d032250f08281c16593e6c 886 SUPERFAMILY SSF52922 701 885 2.51E-58 T 11-11-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 vm_RS02915 ded0694e91d032250f08281c16593e6c 886 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 4 885 0.0 T 11-11-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 vm_RS02915 ded0694e91d032250f08281c16593e6c 886 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 104 294 3.2E-9 T 11-11-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 vm_RS02915 ded0694e91d032250f08281c16593e6c 886 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 360 426 1.4E-4 T 11-11-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 vm_RS02915 ded0694e91d032250f08281c16593e6c 886 Gene3D G3DSA:3.40.50.970 476 704 1.1E-118 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS02915 ded0694e91d032250f08281c16593e6c 886 PIRSF PIRSF000156 1 886 0.0 T 11-11-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 vm_RS05660 63e9a162ee84a7cc031e1730af084dc6 582 SUPERFAMILY SSF52540 331 580 6.91E-94 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05660 63e9a162ee84a7cc031e1730af084dc6 582 Pfam PF00005 ABC transporter 359 509 6.3E-36 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS05660 63e9a162ee84a7cc031e1730af084dc6 582 ProSitePatterns PS00211 ABC transporters family signature. 481 495 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS05660 63e9a162ee84a7cc031e1730af084dc6 582 Pfam PF00664 ABC transporter transmembrane region 28 293 7.0E-55 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 vm_RS05660 63e9a162ee84a7cc031e1730af084dc6 582 SMART SM00382 368 561 5.3E-19 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS05660 63e9a162ee84a7cc031e1730af084dc6 582 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 12 582 1.6E-244 T 11-11-2016 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 vm_RS05660 63e9a162ee84a7cc031e1730af084dc6 582 SUPERFAMILY SSF90123 14 327 7.32E-73 T 11-11-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 vm_RS05660 63e9a162ee84a7cc031e1730af084dc6 582 Gene3D G3DSA:1.20.1560.10 13 325 2.5E-72 T 11-11-2016 vm_RS05660 63e9a162ee84a7cc031e1730af084dc6 582 Gene3D G3DSA:3.40.50.300 342 574 9.0E-86 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09390 0c38e655d203624b6b95358576dbeb11 306 Gene3D G3DSA:1.10.3720.10 87 302 2.6E-18 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS09390 0c38e655d203624b6b95358576dbeb11 306 SUPERFAMILY SSF161098 88 291 1.68E-20 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS09390 0c38e655d203624b6b95358576dbeb11 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 306 6.9E-41 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS13010 a04e3fe609d9a7273fcf675212579a13 231 Pfam PF04231 Endonuclease I 32 227 1.2E-42 T 11-11-2016 IPR007346 Endonuclease I GO:0004518 vm_RS13010 a04e3fe609d9a7273fcf675212579a13 231 SUPERFAMILY SSF54060 21 229 8.47E-92 T 11-11-2016 vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 SUPERFAMILY SSF63411 468 691 6.78E-60 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 Pfam PF00675 Insulinase (Peptidase family M16) 22 158 1.7E-36 T 11-11-2016 IPR011765 Peptidase M16, N-terminal vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 Pfam PF05193 Peptidase M16 inactive domain 182 358 3.8E-27 T 11-11-2016 IPR007863 Peptidase M16, C-terminal vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 Pfam PF05193 Peptidase M16 inactive domain 646 822 2.8E-12 T 11-11-2016 IPR007863 Peptidase M16, C-terminal vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 Gene3D G3DSA:3.30.830.10 705 920 2.8E-46 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 SUPERFAMILY SSF63411 701 911 4.54E-43 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 Gene3D G3DSA:3.30.830.10 470 704 9.7E-69 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 42 65 - T 11-11-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 Pfam PF16187 Middle or third domain of peptidase_M16 365 642 6.9E-84 T 11-11-2016 IPR032632 Peptidase M16, middle/third domain vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 Gene3D G3DSA:3.30.830.10 4 232 1.6E-73 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 SUPERFAMILY SSF63411 234 466 4.95E-76 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 SUPERFAMILY SSF63411 4 226 2.2E-61 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS04580 3461fe8ee0f9d1234d69632527c7e40e 923 Gene3D G3DSA:3.30.830.10 239 469 1.2E-76 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 vm_RS04940 60f3f6681594bfabe5d533e318f95d26 95 SUPERFAMILY SSF54909 2 94 7.51E-27 T 11-11-2016 IPR011008 Dimeric alpha-beta barrel vm_RS04940 60f3f6681594bfabe5d533e318f95d26 95 Gene3D G3DSA:3.30.70.900 2 93 3.4E-31 T 11-11-2016 vm_RS04940 60f3f6681594bfabe5d533e318f95d26 95 Pfam PF03992 Antibiotic biosynthesis monooxygenase 2 76 1.5E-16 T 11-11-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain vm_RS07810 38f36d56da9dbb34b2dfa79d9e357d20 468 Gene3D G3DSA:3.40.605.10 5 254 1.2E-78 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 vm_RS07810 38f36d56da9dbb34b2dfa79d9e357d20 468 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 241 248 - T 11-11-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 vm_RS07810 38f36d56da9dbb34b2dfa79d9e357d20 468 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 269 280 - T 11-11-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 vm_RS07810 38f36d56da9dbb34b2dfa79d9e357d20 468 Gene3D G3DSA:3.40.309.10 255 439 2.4E-61 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 vm_RS07810 38f36d56da9dbb34b2dfa79d9e357d20 468 Pfam PF00171 Aldehyde dehydrogenase family 21 458 2.6E-141 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 vm_RS07810 38f36d56da9dbb34b2dfa79d9e357d20 468 SUPERFAMILY SSF53720 4 466 5.11E-142 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 vm_RS06755 d79cbb256be99b7ca5ca3ef4e5c17403 457 SUPERFAMILY SSF47384 222 288 1.96E-6 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS06755 d79cbb256be99b7ca5ca3ef4e5c17403 457 Gene3D G3DSA:1.10.287.130 234 286 3.0E-4 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS06755 d79cbb256be99b7ca5ca3ef4e5c17403 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 4.8E-7 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS06755 d79cbb256be99b7ca5ca3ef4e5c17403 457 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 4.8E-7 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS06755 d79cbb256be99b7ca5ca3ef4e5c17403 457 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 446 1.4E-9 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS06755 d79cbb256be99b7ca5ca3ef4e5c17403 457 Gene3D G3DSA:3.30.565.10 311 445 5.0E-25 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS06755 d79cbb256be99b7ca5ca3ef4e5c17403 457 SMART SM00387 341 448 1.2E-15 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS06755 d79cbb256be99b7ca5ca3ef4e5c17403 457 SUPERFAMILY SSF55874 312 444 1.44E-22 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS07085 27a19d87d359dc9bf42c5ec438ffe202 135 Gene3D G3DSA:3.90.1010.10 3 133 8.6E-53 T 11-11-2016 vm_RS07085 27a19d87d359dc9bf42c5ec438ffe202 135 Pfam PF02657 Fe-S metabolism associated domain 8 127 8.3E-46 T 11-11-2016 IPR003808 Fe-S metabolism associated domain, SufE-like vm_RS07085 27a19d87d359dc9bf42c5ec438ffe202 135 SUPERFAMILY SSF82649 3 131 2.62E-46 T 11-11-2016 vm_RS07625 1c5998984c6a77e30d03d4d3002fa5bd 371 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 42 365 7.0E-158 T 11-11-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 vm_RS07625 1c5998984c6a77e30d03d4d3002fa5bd 371 SMART SM00382 36 219 5.1E-20 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS07625 1c5998984c6a77e30d03d4d3002fa5bd 371 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS07625 1c5998984c6a77e30d03d4d3002fa5bd 371 Pfam PF08402 TOBE domain 286 365 9.0E-12 T 11-11-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 vm_RS07625 1c5998984c6a77e30d03d4d3002fa5bd 371 SUPERFAMILY SSF50331 244 357 4.76E-9 T 11-11-2016 IPR008995 Molybdate/tungstate binding, C-terminal vm_RS07625 1c5998984c6a77e30d03d4d3002fa5bd 371 SUPERFAMILY SSF52540 12 251 1.77E-88 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07625 1c5998984c6a77e30d03d4d3002fa5bd 371 Gene3D G3DSA:3.40.50.300 10 242 2.3E-83 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07625 1c5998984c6a77e30d03d4d3002fa5bd 371 Pfam PF00005 ABC transporter 29 168 7.8E-36 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS10895 8b59287e25afa71e73a6ef930a0cfb8a 226 Gene3D G3DSA:1.10.10.10 2 66 6.1E-11 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS10895 8b59287e25afa71e73a6ef930a0cfb8a 226 SUPERFAMILY SSF51306 90 221 2.51E-27 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C vm_RS10895 8b59287e25afa71e73a6ef930a0cfb8a 226 Gene3D G3DSA:2.10.109.10 92 224 1.5E-27 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain vm_RS10895 8b59287e25afa71e73a6ef930a0cfb8a 226 Pfam PF00717 Peptidase S24-like 140 205 1.4E-12 T 11-11-2016 IPR019759 Peptidase S24/S26A/S26B vm_RS10895 8b59287e25afa71e73a6ef930a0cfb8a 226 SUPERFAMILY SSF46955 2 64 5.68E-7 T 11-11-2016 IPR009061 Putative DNA-binding domain vm_RS11260 503c6b2b13d70aa9aefcb6e23c1a9a6e 599 SUPERFAMILY SSF89000 300 463 4.32E-46 T 11-11-2016 vm_RS11260 503c6b2b13d70aa9aefcb6e23c1a9a6e 599 Pfam PF00364 Biotin-requiring enzyme 539 598 1.3E-18 T 11-11-2016 IPR000089 Biotin/lipoyl attachment vm_RS11260 503c6b2b13d70aa9aefcb6e23c1a9a6e 599 Pfam PF00682 HMGL-like 8 273 2.2E-65 T 11-11-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 vm_RS11260 503c6b2b13d70aa9aefcb6e23c1a9a6e 599 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 555 572 - T 11-11-2016 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS11260 503c6b2b13d70aa9aefcb6e23c1a9a6e 599 Gene3D G3DSA:3.20.20.70 4 285 1.5E-120 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS11260 503c6b2b13d70aa9aefcb6e23c1a9a6e 599 SUPERFAMILY SSF51230 525 598 2.75E-21 T 11-11-2016 IPR011053 Single hybrid motif vm_RS11260 503c6b2b13d70aa9aefcb6e23c1a9a6e 599 SUPERFAMILY SSF51569 6 303 9.34E-94 T 11-11-2016 vm_RS11260 503c6b2b13d70aa9aefcb6e23c1a9a6e 599 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 10 595 4.8E-279 T 11-11-2016 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 vm_RS11260 503c6b2b13d70aa9aefcb6e23c1a9a6e 599 Gene3D G3DSA:2.40.50.100 529 598 1.4E-25 T 11-11-2016 vm_RS11260 503c6b2b13d70aa9aefcb6e23c1a9a6e 599 Pfam PF02436 Conserved carboxylase domain 295 501 5.1E-53 T 11-11-2016 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 vm_RS14275 edf3e35cfc5aa55db70fde823507835e 307 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 99 272 2.8E-42 T 11-11-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 vm_RS14275 edf3e35cfc5aa55db70fde823507835e 307 Gene3D G3DSA:3.40.50.720 31 107 3.0E-4 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14275 edf3e35cfc5aa55db70fde823507835e 307 SUPERFAMILY SSF51735 93 273 3.24E-42 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14275 edf3e35cfc5aa55db70fde823507835e 307 SUPERFAMILY SSF52283 29 104 1.87E-7 T 11-11-2016 vm_RS14275 edf3e35cfc5aa55db70fde823507835e 307 Gene3D G3DSA:3.40.50.720 108 273 4.3E-48 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS05110 c3776642d69d1e518c53804a0fdba03d 332 TIGRFAM TIGR01927 menC_gamma/gm+: o-succinylbenzoate synthase 7 312 7.2E-134 T 11-11-2016 vm_RS05110 c3776642d69d1e518c53804a0fdba03d 332 Gene3D G3DSA:3.20.20.120 124 302 1.2E-42 T 11-11-2016 IPR029065 Enolase C-terminal domain-like vm_RS05110 c3776642d69d1e518c53804a0fdba03d 332 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 4 320 23.462 T 11-11-2016 IPR010196 o-succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS05110 c3776642d69d1e518c53804a0fdba03d 332 Pfam PF13378 Enolase C-terminal domain-like 130 279 4.4E-12 T 11-11-2016 IPR029065 Enolase C-terminal domain-like vm_RS05110 c3776642d69d1e518c53804a0fdba03d 332 Gene3D G3DSA:3.30.390.10 1 123 2.4E-32 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS05110 c3776642d69d1e518c53804a0fdba03d 332 SUPERFAMILY SSF54826 1 99 1.41E-28 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS05110 c3776642d69d1e518c53804a0fdba03d 332 SMART SM00922 116 211 1.3E-5 T 11-11-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal vm_RS05110 c3776642d69d1e518c53804a0fdba03d 332 SUPERFAMILY SSF51604 105 318 2.75E-44 T 11-11-2016 IPR029065 Enolase C-terminal domain-like vm_RS06275 3ab54e24f9b341f917c7213d06e3925d 233 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 16 86 1.9E-18 T 11-11-2016 IPR007471 Arginine-tRNA-protein transferase, N-terminal GO:0004057|GO:0016598 vm_RS06275 3ab54e24f9b341f917c7213d06e3925d 233 SUPERFAMILY SSF55729 81 232 2.9E-20 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS06275 3ab54e24f9b341f917c7213d06e3925d 233 Hamap MF_00689 Putative arginyl-tRNA--protein transferase [ate]. 1 233 37.505 T 11-11-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic vm_RS06275 3ab54e24f9b341f917c7213d06e3925d 233 PIRSF PIRSF037208 1 233 1.6E-83 T 11-11-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic vm_RS06275 3ab54e24f9b341f917c7213d06e3925d 233 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 107 226 8.2E-33 T 11-11-2016 IPR007472 Arginine-tRNA-protein transferase, C-terminal GO:0004057|GO:0016598 vm_RS08455 62c19736ba963ac093c72c3967be6bf3 364 PIRSF PIRSF039026 6 364 3.0E-143 T 11-11-2016 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like vm_RS08455 62c19736ba963ac093c72c3967be6bf3 364 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 42 329 4.8E-73 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 vm_RS08615 4d6af79b13642ce1814084008112a016 412 Pfam PF00994 Probable molybdopterin binding domain 5 170 2.2E-30 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS08615 4d6af79b13642ce1814084008112a016 412 PIRSF PIRSF006728 1 392 3.3E-120 T 11-11-2016 IPR008135 Competence-induced protein CinA vm_RS08615 4d6af79b13642ce1814084008112a016 412 SUPERFAMILY SSF53218 2 204 7.85E-37 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS08615 4d6af79b13642ce1814084008112a016 412 SMART SM00852 5 172 1.2E-33 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS08615 4d6af79b13642ce1814084008112a016 412 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 412 107.941 T 11-11-2016 IPR008135 Competence-induced protein CinA vm_RS08615 4d6af79b13642ce1814084008112a016 412 TIGRFAM TIGR00200 cinA_nterm: competence/damage-inducible protein CinA N-terminal domain 1 362 4.9E-87 T 11-11-2016 IPR008135 Competence-induced protein CinA vm_RS08615 4d6af79b13642ce1814084008112a016 412 Gene3D G3DSA:3.40.980.10 2 202 8.3E-30 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS08615 4d6af79b13642ce1814084008112a016 412 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 2 165 1.6E-26 T 11-11-2016 IPR001453 MoaB/Mog domain vm_RS14870 eaa435ef7d2d6bb84b4509e162e8ea69 293 Pfam PF02195 ParB-like nuclease domain 43 130 5.7E-29 T 11-11-2016 IPR003115 ParB/Sulfiredoxin vm_RS14870 eaa435ef7d2d6bb84b4509e162e8ea69 293 SMART SM00470 40 130 5.7E-36 T 11-11-2016 IPR003115 ParB/Sulfiredoxin vm_RS14870 eaa435ef7d2d6bb84b4509e162e8ea69 293 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 36 214 9.9E-59 T 11-11-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 vm_RS14870 eaa435ef7d2d6bb84b4509e162e8ea69 293 SUPERFAMILY SSF110849 42 174 1.57E-33 T 11-11-2016 IPR003115 ParB/Sulfiredoxin vm_RS14870 eaa435ef7d2d6bb84b4509e162e8ea69 293 Gene3D G3DSA:3.90.1530.10 34 136 2.4E-40 T 11-11-2016 vm_RS00335 f52921ea9eb31de31ad6230ff63d1458 154 Pfam PF01037 Lrp/AsnC ligand binding domain 75 145 1.5E-17 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain vm_RS00335 f52921ea9eb31de31ad6230ff63d1458 154 SUPERFAMILY SSF54909 69 154 1.03E-19 T 11-11-2016 IPR011008 Dimeric alpha-beta barrel vm_RS00335 f52921ea9eb31de31ad6230ff63d1458 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 35 54 2.5E-10 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS00335 f52921ea9eb31de31ad6230ff63d1458 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 24 35 2.5E-10 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS00335 f52921ea9eb31de31ad6230ff63d1458 154 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 8 24 2.5E-10 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS00335 f52921ea9eb31de31ad6230ff63d1458 154 SUPERFAMILY SSF46785 7 68 6.2E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS00335 f52921ea9eb31de31ad6230ff63d1458 154 SMART SM00344 8 115 9.4E-41 T 11-11-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 vm_RS00335 f52921ea9eb31de31ad6230ff63d1458 154 Gene3D G3DSA:1.10.10.10 3 59 8.5E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS00335 f52921ea9eb31de31ad6230ff63d1458 154 Gene3D G3DSA:3.30.70.920 71 145 4.5E-23 T 11-11-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain vm_RS00335 f52921ea9eb31de31ad6230ff63d1458 154 Pfam PF13404 AsnC-type helix-turn-helix domain 8 49 1.2E-14 T 11-11-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 vm_RS03600 52638a76603f03a63040075a3a244518 280 Pfam PF00557 Metallopeptidase family M24 12 259 1.0E-52 T 11-11-2016 IPR000994 Peptidase M24, structural domain vm_RS03600 52638a76603f03a63040075a3a244518 280 Gene3D G3DSA:3.90.230.10 3 273 7.9E-98 T 11-11-2016 IPR000994 Peptidase M24, structural domain vm_RS03600 52638a76603f03a63040075a3a244518 280 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 3 267 5.7E-91 T 11-11-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 vm_RS03600 52638a76603f03a63040075a3a244518 280 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 185 203 - T 11-11-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 vm_RS03600 52638a76603f03a63040075a3a244518 280 SUPERFAMILY SSF55920 3 269 5.5E-89 T 11-11-2016 IPR000994 Peptidase M24, structural domain vm_RS03600 52638a76603f03a63040075a3a244518 280 PRINTS PR00599 Methionine aminopeptidase-1 signature 209 221 2.9E-15 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase vm_RS03600 52638a76603f03a63040075a3a244518 280 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 2.9E-15 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase vm_RS03600 52638a76603f03a63040075a3a244518 280 PRINTS PR00599 Methionine aminopeptidase-1 signature 179 191 2.9E-15 T 11-11-2016 IPR001714 Peptidase M24, methionine aminopeptidase vm_RS03600 52638a76603f03a63040075a3a244518 280 Hamap MF_01974 Methionine aminopeptidase [map]. 3 268 41.935 T 11-11-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 vm_RS14610 7c6d50929876bf26bbf42f7ef07d4d90 680 Gene3D G3DSA:1.20.1050.40 9 138 1.9E-27 T 11-11-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal vm_RS14610 7c6d50929876bf26bbf42f7ef07d4d90 680 Gene3D G3DSA:1.10.1370.10 505 678 1.6E-141 T 11-11-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 vm_RS14610 7c6d50929876bf26bbf42f7ef07d4d90 680 Gene3D G3DSA:1.10.1370.10 140 349 1.6E-141 T 11-11-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 vm_RS14610 7c6d50929876bf26bbf42f7ef07d4d90 680 SUPERFAMILY SSF55486 1 677 1.47E-210 T 11-11-2016 vm_RS14610 7c6d50929876bf26bbf42f7ef07d4d90 680 Gene3D G3DSA:3.40.390.10 360 504 3.2E-61 T 11-11-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 vm_RS14610 7c6d50929876bf26bbf42f7ef07d4d90 680 Pfam PF01432 Peptidase family M3 222 677 1.1E-164 T 11-11-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 vm_RS04670 d40324740ce02cd42899f2d2a409749d 159 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 145 32.541 T 11-11-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 vm_RS04670 d40324740ce02cd42899f2d2a409749d 159 Gene3D G3DSA:2.40.50.140 26 129 2.2E-39 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS04670 d40324740ce02cd42899f2d2a409749d 159 SUPERFAMILY SSF82093 30 141 3.79E-39 T 11-11-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 vm_RS04670 d40324740ce02cd42899f2d2a409749d 159 Pfam PF03100 CcmE 4 135 2.0E-45 T 11-11-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 vm_RS11860 c1a379c38229457ec85caac8de806d59 296 Gene3D G3DSA:3.30.160.20 159 237 2.8E-37 T 11-11-2016 IPR014720 Double-stranded RNA-binding domain vm_RS11860 c1a379c38229457ec85caac8de806d59 296 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 2 294 2.1E-148 T 11-11-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 vm_RS11860 c1a379c38229457ec85caac8de806d59 296 SMART SM00937 16 126 1.0E-56 T 11-11-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 vm_RS11860 c1a379c38229457ec85caac8de806d59 296 Gene3D G3DSA:1.20.58.410 2 47 2.1E-7 T 11-11-2016 vm_RS11860 c1a379c38229457ec85caac8de806d59 296 Pfam PF00472 RF-1 domain 160 268 5.1E-39 T 11-11-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 vm_RS11860 c1a379c38229457ec85caac8de806d59 296 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 176 192 - T 11-11-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 vm_RS11860 c1a379c38229457ec85caac8de806d59 296 SUPERFAMILY SSF75620 2 295 1.7E-124 T 11-11-2016 vm_RS11860 c1a379c38229457ec85caac8de806d59 296 Pfam PF03462 PCRF domain 3 150 2.9E-47 T 11-11-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 vm_RS09560 67bf148db9e3cceea86ca698a970b87d 129 Pfam PF00893 Small Multidrug Resistance protein 13 104 1.5E-15 T 11-11-2016 IPR000390 Small multidrug resistance protein family GO:0016021 vm_RS09560 67bf148db9e3cceea86ca698a970b87d 129 SUPERFAMILY SSF103481 16 116 1.83E-15 T 11-11-2016 vm_RS13940 d5a00f9efeda01a2fbe399bd69b5bc54 319 SUPERFAMILY SSF64182 5 318 1.15E-41 T 11-11-2016 vm_RS02740 ccca76248569e92ca51b54829ec0649e 462 SUPERFAMILY SSF53383 3 460 3.21E-126 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS02740 ccca76248569e92ca51b54829ec0649e 462 Gene3D G3DSA:3.40.640.10 59 309 1.3E-82 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS02740 ccca76248569e92ca51b54829ec0649e 462 TIGRFAM TIGR02618 tyr_phenol_ly: tyrosine phenol-lyase 6 458 4.8E-241 T 11-11-2016 IPR013441 Tyrosine phenol-lyase GO:0006570|GO:0050371 KEGG: 00350+4.1.99.2 vm_RS02740 ccca76248569e92ca51b54829ec0649e 462 Gene3D G3DSA:3.90.1150.10 310 458 9.2E-60 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS02740 ccca76248569e92ca51b54829ec0649e 462 PIRSF PIRSF001386 1 461 9.3E-202 T 11-11-2016 IPR011166 Beta-eliminating lyase family GO:0009072|GO:0016830 KEGG: 00380+4.1.99.1 vm_RS02740 ccca76248569e92ca51b54829ec0649e 462 Hamap MF_00543 Tyrosine phenol-lyase [tpl]. 2 460 76.332 T 11-11-2016 IPR013441 Tyrosine phenol-lyase GO:0006570|GO:0050371 KEGG: 00350+4.1.99.2 vm_RS02740 ccca76248569e92ca51b54829ec0649e 462 Pfam PF01212 Beta-eliminating lyase 47 426 1.5E-87 T 11-11-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 vm_RS05730 44d553d4c10becc969cc10d4a1ef4468 626 Pfam PF00672 HAMP domain 276 344 6.1E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS05730 44d553d4c10becc969cc10d4a1ef4468 626 SUPERFAMILY SSF58104 315 624 1.44E-61 T 11-11-2016 vm_RS05730 44d553d4c10becc969cc10d4a1ef4468 626 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 491 520 1.7E-21 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS05730 44d553d4c10becc969cc10d4a1ef4468 626 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 385 414 1.7E-21 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS05730 44d553d4c10becc969cc10d4a1ef4468 626 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 462 489 1.7E-21 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS05730 44d553d4c10becc969cc10d4a1ef4468 626 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 428 624 1.8E-43 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS05730 44d553d4c10becc969cc10d4a1ef4468 626 Gene3D G3DSA:1.10.287.950 381 595 9.6E-47 T 11-11-2016 vm_RS05730 44d553d4c10becc969cc10d4a1ef4468 626 SMART SM00304 295 349 5.9E-5 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS05730 44d553d4c10becc969cc10d4a1ef4468 626 SMART SM00283 364 625 1.7E-51 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS11735 5d0d18f619b11490f07860b4cb41a5b8 598 SUPERFAMILY SSF51735 399 497 3.94E-8 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS11735 5d0d18f619b11490f07860b4cb41a5b8 598 Pfam PF02254 TrkA-N domain 399 496 1.6E-6 T 11-11-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 vm_RS11735 5d0d18f619b11490f07860b4cb41a5b8 598 Gene3D G3DSA:3.40.50.720 399 499 9.8E-7 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS11735 5d0d18f619b11490f07860b4cb41a5b8 598 Pfam PF00999 Sodium/hydrogen exchanger family 13 386 5.2E-30 T 11-11-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 vm_RS03170 e94e422ca01ba518c950f1c973c54004 469 TIGRFAM TIGR00835 agcS: amino acid carrier protein 6 434 1.8E-164 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS03170 e94e422ca01ba518c950f1c973c54004 469 PRINTS PR00175 Sodium/alanine symporter signature 199 218 6.6E-59 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS03170 e94e422ca01ba518c950f1c973c54004 469 PRINTS PR00175 Sodium/alanine symporter signature 80 102 6.6E-59 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS03170 e94e422ca01ba518c950f1c973c54004 469 PRINTS PR00175 Sodium/alanine symporter signature 342 364 6.6E-59 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS03170 e94e422ca01ba518c950f1c973c54004 469 PRINTS PR00175 Sodium/alanine symporter signature 296 314 6.6E-59 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS03170 e94e422ca01ba518c950f1c973c54004 469 PRINTS PR00175 Sodium/alanine symporter signature 171 189 6.6E-59 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS03170 e94e422ca01ba518c950f1c973c54004 469 PRINTS PR00175 Sodium/alanine symporter signature 403 423 6.6E-59 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS03170 e94e422ca01ba518c950f1c973c54004 469 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 80 95 - T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS03170 e94e422ca01ba518c950f1c973c54004 469 Pfam PF01235 Sodium:alanine symporter family 41 445 1.2E-163 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS01965 ace854ca5fb3a798c2678450356c9e2c 100 Pfam PF00276 Ribosomal protein L23 9 95 2.0E-31 T 11-11-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 vm_RS01965 ace854ca5fb3a798c2678450356c9e2c 100 Gene3D G3DSA:3.30.70.330 6 98 1.5E-35 T 11-11-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 vm_RS01965 ace854ca5fb3a798c2678450356c9e2c 100 ProSitePatterns PS00050 Ribosomal protein L23 signature. 81 96 - T 11-11-2016 IPR001014 Ribosomal protein L23/L25, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01965 ace854ca5fb3a798c2678450356c9e2c 100 SUPERFAMILY SSF54189 3 92 8.63E-32 T 11-11-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01965 ace854ca5fb3a798c2678450356c9e2c 100 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 22.356 T 11-11-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 vm_RS08160 27299b2deda8b41c6b4a49219e6f00f7 323 PIRSF PIRSF017082 4 323 9.2E-86 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 vm_RS08160 27299b2deda8b41c6b4a49219e6f00f7 323 SUPERFAMILY SSF53850 107 290 4.54E-10 T 11-11-2016 vm_RS08160 27299b2deda8b41c6b4a49219e6f00f7 323 Gene3D G3DSA:3.40.190.10 124 238 2.0E-4 T 11-11-2016 vm_RS08160 27299b2deda8b41c6b4a49219e6f00f7 323 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 70 320 6.6E-23 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 vm_RS05535 a6e07c79a4f39a2f85a9664eb0d98534 402 SUPERFAMILY SSF53335 121 209 4.94E-8 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS05535 a6e07c79a4f39a2f85a9664eb0d98534 402 Pfam PF13679 Methyltransferase domain 106 230 2.0E-18 T 11-11-2016 IPR025714 Methyltransferase domain vm_RS05535 a6e07c79a4f39a2f85a9664eb0d98534 402 Gene3D G3DSA:3.40.50.150 121 181 2.2E-5 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS07140 107db63982655a05cf2a56b2c5856bb1 309 Gene3D G3DSA:3.40.190.10 277 304 4.3E-22 T 11-11-2016 vm_RS07140 107db63982655a05cf2a56b2c5856bb1 309 Gene3D G3DSA:3.40.190.10 94 176 4.3E-22 T 11-11-2016 vm_RS07140 107db63982655a05cf2a56b2c5856bb1 309 SUPERFAMILY SSF53850 94 300 3.08E-40 T 11-11-2016 vm_RS07140 107db63982655a05cf2a56b2c5856bb1 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 72 1.3E-15 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS07140 107db63982655a05cf2a56b2c5856bb1 309 Gene3D G3DSA:1.10.10.10 7 90 4.7E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS07140 107db63982655a05cf2a56b2c5856bb1 309 SUPERFAMILY SSF46785 8 88 2.86E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS07140 107db63982655a05cf2a56b2c5856bb1 309 Gene3D G3DSA:3.40.190.10 177 271 6.0E-29 T 11-11-2016 vm_RS07140 107db63982655a05cf2a56b2c5856bb1 309 Pfam PF03466 LysR substrate binding domain 100 300 3.9E-20 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS07140 107db63982655a05cf2a56b2c5856bb1 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 39 1.0E-6 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS07140 107db63982655a05cf2a56b2c5856bb1 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 49 1.0E-6 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS07140 107db63982655a05cf2a56b2c5856bb1 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 49 60 1.0E-6 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS03590 a3e20b2d232f91aee35da925cb4e04b1 127 Hamap MF_01519 UPF0325 protein YaeH [yaeH]. 1 127 30.533 T 11-11-2016 IPR020911 Uncharacterised protein family UPF0325 vm_RS03590 a3e20b2d232f91aee35da925cb4e04b1 127 Pfam PF11944 Protein of unknown function (DUF3461) 1 126 6.7E-55 T 11-11-2016 IPR020911 Uncharacterised protein family UPF0325 vm_RS03590 a3e20b2d232f91aee35da925cb4e04b1 127 ProDom PD080106 UPF0325 YAEH STRUCTURAL ECA1027 VV11856 YPTB3007 PBPRA2971 VV2560 VF1965 VC2264 1 126 5.0E-66 T 11-11-2016 IPR020911 Uncharacterised protein family UPF0325 vm_RS14550 795bf5e66f4d0d0db01f144bb81f3259 319 SUPERFAMILY SSF53807 53 312 1.37E-51 T 11-11-2016 vm_RS14550 795bf5e66f4d0d0db01f144bb81f3259 319 Pfam PF01497 Periplasmic binding protein 56 286 7.5E-22 T 11-11-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 vm_RS14550 795bf5e66f4d0d0db01f144bb81f3259 319 Gene3D G3DSA:3.40.50.1980 143 313 5.2E-45 T 11-11-2016 vm_RS14550 795bf5e66f4d0d0db01f144bb81f3259 319 Gene3D G3DSA:3.40.50.1980 52 139 4.4E-34 T 11-11-2016 vm_RS14550 795bf5e66f4d0d0db01f144bb81f3259 319 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 104 119 2.9E-6 T 11-11-2016 IPR008091 Ferrichrome-binding periplasmic protein vm_RS14550 795bf5e66f4d0d0db01f144bb81f3259 319 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 293 306 2.9E-6 T 11-11-2016 IPR008091 Ferrichrome-binding periplasmic protein vm_RS14550 795bf5e66f4d0d0db01f144bb81f3259 319 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 73 91 2.9E-6 T 11-11-2016 IPR008091 Ferrichrome-binding periplasmic protein vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 Pfam PF00691 OmpA family 212 307 8.8E-27 T 11-11-2016 IPR006665 OmpA-like domain vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 SUPERFAMILY SSF103088 189 313 2.75E-39 T 11-11-2016 IPR006665 OmpA-like domain vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 SUPERFAMILY SSF56925 19 174 4.71E-30 T 11-11-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 258 275 2.9E-6 T 11-11-2016 vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 296 316 2.9E-6 T 11-11-2016 vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 276 295 2.9E-6 T 11-11-2016 vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 Gene3D G3DSA:3.30.1330.60 201 313 2.6E-42 T 11-11-2016 IPR006665 OmpA-like domain vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 Gene3D G3DSA:2.40.160.20 6 192 1.5E-48 T 11-11-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 Pfam PF01389 OmpA-like transmembrane domain 20 172 6.8E-42 T 11-11-2016 IPR000498 Outer membrane protein OmpA-like, transmembrane domain GO:0009279|GO:0016021 vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 PRINTS PR01021 OMPA domain signature 258 274 1.0E-14 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 PRINTS PR01021 OMPA domain signature 213 235 1.0E-14 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 PRINTS PR01021 OMPA domain signature 243 258 1.0E-14 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS03815 f6891390cdd3d39f34c63ede5088c475 322 ProSitePatterns PS01068 OmpA-like domain. 245 289 - T 11-11-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 vm_RS09355 0b13618ab3e20324cb90a5a89c10506b 150 Pfam PF04217 Protein of unknown function, DUF412 8 146 2.9E-59 T 11-11-2016 IPR007334 Uncharacterised protein family UPF0208 vm_RS09355 0b13618ab3e20324cb90a5a89c10506b 150 Hamap MF_01101 UPF0208 membrane protein YfbV [yfbV]. 5 150 35.913 T 11-11-2016 IPR007334 Uncharacterised protein family UPF0208 vm_RS03400 40d85e4cf096ae499a4b90f16bd887d8 193 SMART SM00464 3 189 3.8E-4 T 11-11-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 vm_RS03400 40d85e4cf096ae499a4b90f16bd887d8 193 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 3 116 6.3E-16 T 11-11-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 vm_RS03400 40d85e4cf096ae499a4b90f16bd887d8 193 SUPERFAMILY SSF88697 3 188 9.69E-49 T 11-11-2016 IPR015947 PUA-like domain vm_RS08845 1763f884e7c8021f78b53511d2633a59 511 Gene3D G3DSA:1.10.275.10 4 197 2.3E-76 T 11-11-2016 IPR024083 Fumarase/histidase, N-terminal vm_RS08845 1763f884e7c8021f78b53511d2633a59 511 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 44.52 T 11-11-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 vm_RS08845 1763f884e7c8021f78b53511d2633a59 511 Pfam PF00221 Aromatic amino acid lyase 11 471 2.3E-191 T 11-11-2016 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 vm_RS08845 1763f884e7c8021f78b53511d2633a59 511 SUPERFAMILY SSF48557 4 504 3.85E-196 T 11-11-2016 IPR008948 L-Aspartase-like GO:0003824 vm_RS08845 1763f884e7c8021f78b53511d2633a59 511 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 494 3.2E-215 T 11-11-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 vm_RS08845 1763f884e7c8021f78b53511d2633a59 511 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 11-11-2016 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 vm_RS08845 1763f884e7c8021f78b53511d2633a59 511 Gene3D G3DSA:1.20.200.10 198 493 3.2E-130 T 11-11-2016 vm_RS01540 fcfb3a9a2503f2dd45c3d9e1e1bf1208 295 Pfam PF02219 Methylenetetrahydrofolate reductase 16 290 2.4E-100 T 11-11-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 vm_RS01540 fcfb3a9a2503f2dd45c3d9e1e1bf1208 295 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 24 289 5.0E-103 T 11-11-2016 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841 vm_RS01540 fcfb3a9a2503f2dd45c3d9e1e1bf1208 295 SUPERFAMILY SSF51730 21 293 6.67E-96 T 11-11-2016 IPR029041 FAD-linked oxidoreductase-like vm_RS01540 fcfb3a9a2503f2dd45c3d9e1e1bf1208 295 Gene3D G3DSA:3.20.20.220 10 293 1.1E-105 T 11-11-2016 IPR029041 FAD-linked oxidoreductase-like vm_RS01905 998a36cbb73b06b5f78a2163a8ebee82 600 Hamap MF_01412 Glutathione-regulated potassium-efflux system protein KefB [kefB]. 4 598 46.992 T 11-11-2016 IPR020884 Glutathione-regulated potassium-efflux system protein KefB GO:0005886|GO:0006813|GO:0015503 vm_RS01905 998a36cbb73b06b5f78a2163a8ebee82 600 PRINTS PR00335 TrkA potassium uptake protein signature 401 415 5.4E-7 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 vm_RS01905 998a36cbb73b06b5f78a2163a8ebee82 600 PRINTS PR00335 TrkA potassium uptake protein signature 418 432 5.4E-7 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 vm_RS01905 998a36cbb73b06b5f78a2163a8ebee82 600 PRINTS PR00335 TrkA potassium uptake protein signature 447 457 5.4E-7 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 vm_RS01905 998a36cbb73b06b5f78a2163a8ebee82 600 PRINTS PR00335 TrkA potassium uptake protein signature 458 468 5.4E-7 T 11-11-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 vm_RS01905 998a36cbb73b06b5f78a2163a8ebee82 600 Gene3D G3DSA:3.40.50.720 396 530 9.8E-40 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS01905 998a36cbb73b06b5f78a2163a8ebee82 600 Pfam PF02254 TrkA-N domain 402 512 7.6E-25 T 11-11-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 vm_RS01905 998a36cbb73b06b5f78a2163a8ebee82 600 Pfam PF00999 Sodium/hydrogen exchanger family 14 372 2.5E-63 T 11-11-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 vm_RS01905 998a36cbb73b06b5f78a2163a8ebee82 600 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 16 283 4.1E-81 T 11-11-2016 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 vm_RS01905 998a36cbb73b06b5f78a2163a8ebee82 600 SUPERFAMILY SSF51735 401 529 1.43E-32 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS06960 1d636c7c6b01412907c82d2d22408dc9 226 PIRSF PIRSF028063 1 221 3.2E-139 T 11-11-2016 IPR014538 Uncharacterised conserved protein, topoisomerase zinc finger vm_RS06960 1d636c7c6b01412907c82d2d22408dc9 226 Pfam PF10881 Protein of unknown function (DUF2726) 38 160 1.0E-36 T 11-11-2016 IPR024402 Domain of unknown function DUF2726 vm_RS06960 1d636c7c6b01412907c82d2d22408dc9 226 Gene3D G3DSA:3.30.65.10 174 213 8.5E-5 T 11-11-2016 vm_RS07060 3c8d382c5bbda323b19a6ac734fe4c03 122 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 103 120 - T 11-11-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site vm_RS07060 3c8d382c5bbda323b19a6ac734fe4c03 122 Gene3D G3DSA:2.60.300.12 21 111 1.1E-19 T 11-11-2016 IPR000361 FeS cluster biogenesis vm_RS07060 3c8d382c5bbda323b19a6ac734fe4c03 122 Pfam PF01521 Iron-sulphur cluster biosynthesis 21 117 6.4E-12 T 11-11-2016 IPR000361 FeS cluster biogenesis vm_RS07060 3c8d382c5bbda323b19a6ac734fe4c03 122 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 21 121 2.5E-24 T 11-11-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 vm_RS07060 3c8d382c5bbda323b19a6ac734fe4c03 122 SUPERFAMILY SSF89360 21 111 6.08E-19 T 11-11-2016 IPR000361 FeS cluster biogenesis vm_RS02785 5ac815f9a2430b7b2a5b08284c179047 418 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 283 312 1.5E-21 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS02785 5ac815f9a2430b7b2a5b08284c179047 418 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 254 281 1.5E-21 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS02785 5ac815f9a2430b7b2a5b08284c179047 418 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 68 88 1.5E-21 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS02785 5ac815f9a2430b7b2a5b08284c179047 418 SUPERFAMILY SSF58104 109 418 1.96E-75 T 11-11-2016 vm_RS02785 5ac815f9a2430b7b2a5b08284c179047 418 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 214 416 3.8E-48 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS02785 5ac815f9a2430b7b2a5b08284c179047 418 Pfam PF00672 HAMP domain 70 138 1.3E-7 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS02785 5ac815f9a2430b7b2a5b08284c179047 418 SMART SM00304 89 141 0.0037 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS02785 5ac815f9a2430b7b2a5b08284c179047 418 SMART SM00283 156 417 6.4E-70 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS02785 5ac815f9a2430b7b2a5b08284c179047 418 Gene3D G3DSA:1.10.287.950 174 386 6.3E-60 T 11-11-2016 vm_RS07825 6a9eb0b79c30656942e6cf58ca20f76a 313 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 309 1.1E-32 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 vm_RS07825 6a9eb0b79c30656942e6cf58ca20f76a 313 PIRSF PIRSF017082 1 312 2.9E-50 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 vm_RS09490 9b5fcde91d14234e375e14171cc27eb1 397 Gene3D G3DSA:3.20.20.140 58 338 2.7E-105 T 11-11-2016 vm_RS09490 9b5fcde91d14234e375e14171cc27eb1 397 SUPERFAMILY SSF51338 354 385 3.07E-8 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS09490 9b5fcde91d14234e375e14171cc27eb1 397 SUPERFAMILY SSF51338 9 57 3.07E-8 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS09490 9b5fcde91d14234e375e14171cc27eb1 397 SUPERFAMILY SSF51556 58 354 1.22E-98 T 11-11-2016 IPR032466 Metal-dependent hydrolase vm_RS09490 9b5fcde91d14234e375e14171cc27eb1 397 TIGRFAM TIGR00221 nagA: N-acetylglucosamine-6-phosphate deacetylase 12 380 2.1E-92 T 11-11-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 vm_RS09490 9b5fcde91d14234e375e14171cc27eb1 397 PIRSF PIRSF038994 4 387 1.2E-121 T 11-11-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395|Reactome: R-HSA-446210 vm_RS09490 9b5fcde91d14234e375e14171cc27eb1 397 Gene3D G3DSA:2.30.40.10 339 387 7.2E-8 T 11-11-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 vm_RS09490 9b5fcde91d14234e375e14171cc27eb1 397 Pfam PF01979 Amidohydrolase family 55 383 1.5E-23 T 11-11-2016 IPR006680 Amidohydrolase-related GO:0016787 vm_RS07000 f275fa8db607744b2322c1870bea46c3 432 SMART SM00812 5 382 2.5E-100 T 11-11-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 vm_RS07000 f275fa8db607744b2322c1870bea46c3 432 PIRSF PIRSF001092 1 422 1.7E-113 T 11-11-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 vm_RS07000 f275fa8db607744b2322c1870bea46c3 432 SUPERFAMILY SSF51445 10 343 1.68E-92 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS07000 f275fa8db607744b2322c1870bea46c3 432 Gene3D G3DSA:3.20.20.80 4 343 1.9E-97 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS07000 f275fa8db607744b2322c1870bea46c3 432 PRINTS PR00741 Glycosyl hydrolase family 29 signature 129 148 8.9E-8 T 11-11-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 vm_RS07000 f275fa8db607744b2322c1870bea46c3 432 PRINTS PR00741 Glycosyl hydrolase family 29 signature 84 100 8.9E-8 T 11-11-2016 IPR016286 Alpha-L-fucosidase, metazoa-type GO:0004560|GO:0006004 KEGG: 00511+3.2.1.51 vm_RS07000 f275fa8db607744b2322c1870bea46c3 432 Pfam PF01120 Alpha-L-fucosidase 3 339 4.0E-88 T 11-11-2016 IPR000933 Glycoside hydrolase, family 29 GO:0004560|GO:0005975 KEGG: 00511+3.2.1.51 vm_RS02250 b725f532fe3021321056c7c8e20a0367 240 Gene3D G3DSA:3.40.50.300 1 230 4.3E-65 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02250 b725f532fe3021321056c7c8e20a0367 240 SMART SM00382 24 207 1.8E-18 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS02250 b725f532fe3021321056c7c8e20a0367 240 Pfam PF00005 ABC transporter 19 157 7.7E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS02250 b725f532fe3021321056c7c8e20a0367 240 TIGRFAM TIGR01277 thiQ: thiamine ABC transporter, ATP-binding protein 2 214 2.9E-115 T 11-11-2016 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ GO:0005524|GO:0006810|GO:0016021|GO:0042626 vm_RS02250 b725f532fe3021321056c7c8e20a0367 240 ProSitePatterns PS00211 ABC transporters family signature. 130 144 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS02250 b725f532fe3021321056c7c8e20a0367 240 SUPERFAMILY SSF52540 1 231 3.1E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01890 6bf9fa45c5c3c8d03ae94303c62ffb02 161 TIGRFAM TIGR02444 TIGR02444: TIGR02444 family protein 13 118 1.8E-34 T 11-11-2016 IPR012659 Conserved hypothetical protein CHP02444 vm_RS01890 6bf9fa45c5c3c8d03ae94303c62ffb02 161 Pfam PF09523 Protein of unknown function (DUF2390) 15 115 3.8E-28 T 11-11-2016 IPR012659 Conserved hypothetical protein CHP02444 vm_RS04175 621a0b79a73d50cf9cbc78fd33110f2e 180 Gene3D G3DSA:3.30.70.260 88 180 5.0E-39 T 11-11-2016 vm_RS04175 621a0b79a73d50cf9cbc78fd33110f2e 180 Gene3D G3DSA:3.30.70.260 1 84 1.8E-27 T 11-11-2016 vm_RS04175 621a0b79a73d50cf9cbc78fd33110f2e 180 PIRSF PIRSF028103 1 178 4.2E-61 T 11-11-2016 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 vm_RS04175 621a0b79a73d50cf9cbc78fd33110f2e 180 SUPERFAMILY SSF55021 86 176 9.16E-22 T 11-11-2016 vm_RS04175 621a0b79a73d50cf9cbc78fd33110f2e 180 Pfam PF13740 ACT domain 3 78 2.1E-24 T 11-11-2016 vm_RS04175 621a0b79a73d50cf9cbc78fd33110f2e 180 SUPERFAMILY SSF55021 1 84 4.2E-18 T 11-11-2016 vm_RS00710 56b436123768d40c9036226d0dd31436 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 61 1.4E-9 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS00710 56b436123768d40c9036226d0dd31436 213 Gene3D G3DSA:1.10.357.10 7 195 1.6E-35 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 vm_RS00710 56b436123768d40c9036226d0dd31436 213 SUPERFAMILY SSF46689 7 80 3.83E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS00710 56b436123768d40c9036226d0dd31436 213 ProSitePatterns PS01081 TetR-type HTH domain signature. 31 61 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site vm_RS08715 b2aa6f503aed773bd1f8c27b068a943d 391 SUPERFAMILY SSF56059 111 313 2.12E-58 T 11-11-2016 vm_RS08715 b2aa6f503aed773bd1f8c27b068a943d 391 Gene3D G3DSA:3.40.50.20 3 118 9.3E-40 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS08715 b2aa6f503aed773bd1f8c27b068a943d 391 SUPERFAMILY SSF52440 2 110 1.31E-35 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS08715 b2aa6f503aed773bd1f8c27b068a943d 391 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 12 390 2.7E-198 T 11-11-2016 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 vm_RS08715 b2aa6f503aed773bd1f8c27b068a943d 391 SUPERFAMILY SSF51246 317 389 1.88E-18 T 11-11-2016 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780|Reactome: R-HSA-3371599 vm_RS08715 b2aa6f503aed773bd1f8c27b068a943d 391 Gene3D G3DSA:3.30.470.20 197 387 8.5E-71 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS08715 b2aa6f503aed773bd1f8c27b068a943d 391 Gene3D G3DSA:3.30.1490.20 121 196 6.3E-27 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS08715 b2aa6f503aed773bd1f8c27b068a943d 391 Pfam PF02222 ATP-grasp domain 121 293 7.4E-58 T 11-11-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type vm_RS08715 b2aa6f503aed773bd1f8c27b068a943d 391 Hamap MF_01643 Phosphoribosylglycinamide formyltransferase 2 [purT]. 6 390 52.123 T 11-11-2016 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 vm_RS11075 3ad7eede4f48a5b084c4881f05cb3c3c 299 Pfam PF10124 Mu-like prophage major head subunit gpT 10 298 1.2E-109 T 11-11-2016 IPR018774 Bacteriophage Mu, GpT vm_RS01375 3ad7eede4f48a5b084c4881f05cb3c3c 299 Pfam PF10124 Mu-like prophage major head subunit gpT 10 298 1.2E-109 T 11-11-2016 IPR018774 Bacteriophage Mu, GpT vm_RS03700 0cae478cc88eafdb0d9ec91a89920ee8 112 SUPERFAMILY SSF54913 1 112 4.13E-47 T 11-11-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta vm_RS03700 0cae478cc88eafdb0d9ec91a89920ee8 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 1.8E-44 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS03700 0cae478cc88eafdb0d9ec91a89920ee8 112 SMART SM00938 4 105 1.7E-69 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS03700 0cae478cc88eafdb0d9ec91a89920ee8 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 11-11-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 vm_RS03700 0cae478cc88eafdb0d9ec91a89920ee8 112 PRINTS PR00340 P-II protein signature 52 75 1.8E-44 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS03700 0cae478cc88eafdb0d9ec91a89920ee8 112 PRINTS PR00340 P-II protein signature 23 41 1.8E-44 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS03700 0cae478cc88eafdb0d9ec91a89920ee8 112 PRINTS PR00340 P-II protein signature 2 17 1.8E-44 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS03700 0cae478cc88eafdb0d9ec91a89920ee8 112 PRINTS PR00340 P-II protein signature 83 103 1.8E-44 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS03700 0cae478cc88eafdb0d9ec91a89920ee8 112 PIRSF PIRSF039144 1 112 2.3E-58 T 11-11-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 vm_RS03700 0cae478cc88eafdb0d9ec91a89920ee8 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 11-11-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 vm_RS03700 0cae478cc88eafdb0d9ec91a89920ee8 112 Gene3D G3DSA:3.30.70.120 1 112 6.1E-52 T 11-11-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal vm_RS13510 3a1786069c3d1a15560b9038dc8e2bb8 281 Gene3D G3DSA:3.40.50.300 30 181 7.9E-18 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13510 3a1786069c3d1a15560b9038dc8e2bb8 281 Pfam PF13401 AAA domain 42 168 2.8E-22 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS13510 3a1786069c3d1a15560b9038dc8e2bb8 281 SUPERFAMILY SSF52540 5 260 1.61E-25 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08075 dcc39a081c5e1dee14d743e4e7a6a92a 157 SUPERFAMILY SSF52833 1 156 1.02E-36 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS08075 dcc39a081c5e1dee14d743e4e7a6a92a 157 Gene3D G3DSA:3.40.30.10 1 157 4.3E-62 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS08075 dcc39a081c5e1dee14d743e4e7a6a92a 157 Pfam PF08534 Redoxin 5 154 9.5E-40 T 11-11-2016 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 vm_RS04500 2051ba3ade119b876b8bcb4d7a3f6b53 236 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 5 109 8.8E-29 T 11-11-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04500 2051ba3ade119b876b8bcb4d7a3f6b53 236 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 8 228 7.9E-86 T 11-11-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|Reactome: R-HSA-611105|Reactome: R-HSA-71403 vm_RS04500 2051ba3ade119b876b8bcb4d7a3f6b53 236 SUPERFAMILY SSF54292 1 104 5.33E-29 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 vm_RS04500 2051ba3ade119b876b8bcb4d7a3f6b53 236 Gene3D G3DSA:3.10.20.30 1 104 1.5E-35 T 11-11-2016 IPR012675 Beta-grasp domain vm_RS04500 2051ba3ade119b876b8bcb4d7a3f6b53 236 Gene3D G3DSA:1.10.1060.10 105 234 3.3E-46 T 11-11-2016 vm_RS04500 2051ba3ade119b876b8bcb4d7a3f6b53 236 SUPERFAMILY SSF46548 105 232 1.31E-39 T 11-11-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 vm_RS04500 2051ba3ade119b876b8bcb4d7a3f6b53 236 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 147 158 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS04500 2051ba3ade119b876b8bcb4d7a3f6b53 236 Pfam PF13534 4Fe-4S dicluster domain 146 219 4.0E-10 T 11-11-2016 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 PRINTS PR00072 Malic enzyme signature 144 173 2.3E-72 T 11-11-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 PRINTS PR00072 Malic enzyme signature 264 280 2.3E-72 T 11-11-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 PRINTS PR00072 Malic enzyme signature 84 108 2.3E-72 T 11-11-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 PRINTS PR00072 Malic enzyme signature 295 311 2.3E-72 T 11-11-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 PRINTS PR00072 Malic enzyme signature 180 202 2.3E-72 T 11-11-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 PRINTS PR00072 Malic enzyme signature 239 257 2.3E-72 T 11-11-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 PRINTS PR00072 Malic enzyme signature 405 421 2.3E-72 T 11-11-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 PIRSF PIRSF000106 2 560 8.5E-225 T 11-11-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 Pfam PF03949 Malic enzyme, NAD binding domain 268 528 3.1E-104 T 11-11-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 SUPERFAMILY SSF53223 4 267 5.76E-109 T 11-11-2016 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 Gene3D G3DSA:3.40.50.720 266 559 8.7E-109 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 Gene3D G3DSA:3.40.50.10380 14 265 8.7E-116 T 11-11-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 SMART SM00919 268 528 1.3E-132 T 11-11-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 SMART SM01274 78 258 3.5E-107 T 11-11-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 ProSitePatterns PS00331 Malic enzymes signature. 264 280 - T 11-11-2016 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 Hamap MF_01619 NAD-dependent malic enzyme [maeA]. 1 562 72.381 T 11-11-2016 IPR023667 NAD-dependent malic enzyme, proteobacteria GO:0004471|GO:0055114 KEGG: 00620+1.1.1.38 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 Pfam PF00390 Malic enzyme, N-terminal domain 78 258 2.8E-78 T 11-11-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 vm_RS08910 b5fc9d299ede3db3964e96938040f67b 562 SUPERFAMILY SSF51735 268 559 1.03E-94 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS08800 7bece1e0e0ccb94a9b40597d55461bd9 699 Pfam PF02378 Phosphotransferase system, EIIC 31 333 7.5E-19 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 vm_RS08800 7bece1e0e0ccb94a9b40597d55461bd9 699 SUPERFAMILY SSF141868 449 689 3.27E-61 T 11-11-2016 IPR001633 EAL domain vm_RS08800 7bece1e0e0ccb94a9b40597d55461bd9 699 Gene3D G3DSA:3.20.20.450 449 687 1.8E-66 T 11-11-2016 IPR001633 EAL domain vm_RS08800 7bece1e0e0ccb94a9b40597d55461bd9 699 SMART SM00052 440 680 3.0E-67 T 11-11-2016 IPR001633 EAL domain vm_RS08800 7bece1e0e0ccb94a9b40597d55461bd9 699 Pfam PF00563 EAL domain 447 674 2.3E-61 T 11-11-2016 IPR001633 EAL domain vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 164 320 5.9E-56 T 11-11-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 Gene3D G3DSA:3.40.50.720 1 167 5.3E-63 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 Hamap MF_01640 D-erythrose-4-phosphate dehydrogenase [epd]. 1 341 65.197 T 11-11-2016 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 SMART SM00846 2 159 7.8E-71 T 11-11-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 159 2.8E-47 T 11-11-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 SUPERFAMILY SSF51735 2 185 4.74E-49 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 180 196 1.7E-29 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 236 253 1.7E-29 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 153 171 1.7E-29 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 116 129 1.7E-29 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 276 291 1.7E-29 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 3 332 3.7E-195 T 11-11-2016 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72 vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 Gene3D G3DSA:3.30.360.10 168 322 9.1E-62 T 11-11-2016 vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 SUPERFAMILY SSF55347 159 321 1.85E-58 T 11-11-2016 vm_RS12975 b432a9f2be0706ee419e0bd444490141 341 PIRSF PIRSF000149 1 341 6.9E-125 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS10420 6810c489fe3f7fb187adac21a0b7fcfb 198 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 11 187 4.2E-34 T 11-11-2016 IPR003740 Uncharacterised membrane protein YitT vm_RS05765 a97d6fb8a5141b1bfc2666f340b79d33 225 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 112 6.1E-24 T 11-11-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 vm_RS05765 a97d6fb8a5141b1bfc2666f340b79d33 225 Gene3D G3DSA:1.10.3720.10 10 217 2.5E-43 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS05765 a97d6fb8a5141b1bfc2666f340b79d33 225 SUPERFAMILY SSF161098 11 203 8.76E-42 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS05765 a97d6fb8a5141b1bfc2666f340b79d33 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 217 1.4E-21 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 Pfam PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF 7 103 4.4E-30 T 11-11-2016 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901 vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 Pfam PF01189 16S rRNA methyltransferase RsmB/F 115 306 7.6E-49 T 11-11-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 Pfam PF13636 RNA-binding PUA-like domain of methyltransferase RsmF 419 468 1.2E-10 T 11-11-2016 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 Gene3D G3DSA:3.40.50.150 100 308 2.1E-58 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 186 197 - T 11-11-2016 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 89 103 2.2E-28 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 291 308 2.2E-28 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 187 199 2.2E-28 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 120 130 2.2E-28 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 237 253 2.2E-28 T 11-11-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 SUPERFAMILY SSF53335 6 308 1.56E-63 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 Hamap MF_01579 Ribosomal RNA small subunit methyltransferase F [rsmF]. 5 473 63.418 T 11-11-2016 IPR023545 rRNA small subunit methyltransferase F GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS07425 b2adf7c4c440755a0dfa4eacd9f0a2cb 473 TIGRFAM TIGR00446 nop2p: NOL1/NOP2/sun family putative RNA methylase 40 308 8.9E-100 T 11-11-2016 IPR011023 Nop2p GO:0003723|GO:0006364|GO:0008757 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-6790901 vm_RS10240 1c9fbd2222f989e0f8f997b2d07b7897 275 Gene3D G3DSA:3.40.50.720 3 271 1.5E-59 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS10240 1c9fbd2222f989e0f8f997b2d07b7897 275 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 11-11-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 vm_RS10240 1c9fbd2222f989e0f8f997b2d07b7897 275 SUPERFAMILY SSF51735 3 270 1.01E-54 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS10240 1c9fbd2222f989e0f8f997b2d07b7897 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 3.3E-13 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS10240 1c9fbd2222f989e0f8f997b2d07b7897 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.3E-13 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS10240 1c9fbd2222f989e0f8f997b2d07b7897 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 3.3E-13 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS10240 1c9fbd2222f989e0f8f997b2d07b7897 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 3.3E-13 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS10240 1c9fbd2222f989e0f8f997b2d07b7897 275 Pfam PF00106 short chain dehydrogenase 3 187 1.2E-38 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS01930 652b41264ff9835fd4ab721c0c7982b6 211 SUPERFAMILY SSF81901 65 177 6.02E-21 T 11-11-2016 vm_RS01930 652b41264ff9835fd4ab721c0c7982b6 211 SMART SM00671 144 179 18.0 T 11-11-2016 IPR006597 Sel1-like repeat vm_RS01930 652b41264ff9835fd4ab721c0c7982b6 211 SMART SM00671 72 107 0.015 T 11-11-2016 IPR006597 Sel1-like repeat vm_RS01930 652b41264ff9835fd4ab721c0c7982b6 211 SMART SM00671 108 143 2.9E-6 T 11-11-2016 IPR006597 Sel1-like repeat vm_RS01930 652b41264ff9835fd4ab721c0c7982b6 211 Pfam PF08238 Sel1 repeat 149 171 180.0 T 11-11-2016 IPR006597 Sel1-like repeat vm_RS01930 652b41264ff9835fd4ab721c0c7982b6 211 Pfam PF08238 Sel1 repeat 76 106 0.025 T 11-11-2016 IPR006597 Sel1-like repeat vm_RS01930 652b41264ff9835fd4ab721c0c7982b6 211 Pfam PF08238 Sel1 repeat 108 143 1.6E-5 T 11-11-2016 IPR006597 Sel1-like repeat vm_RS01930 652b41264ff9835fd4ab721c0c7982b6 211 Gene3D G3DSA:1.25.40.10 72 178 1.6E-18 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS07655 ee260840a0f5709c7e0ada0bd575f58d 222 Pfam PF00072 Response regulator receiver domain 5 115 1.3E-23 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS07655 ee260840a0f5709c7e0ada0bd575f58d 222 ProSitePatterns PS00622 LuxR-type HTH domain signature. 171 198 - T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS07655 ee260840a0f5709c7e0ada0bd575f58d 222 Gene3D G3DSA:3.40.50.2300 2 127 5.0E-27 T 11-11-2016 vm_RS07655 ee260840a0f5709c7e0ada0bd575f58d 222 SMART SM00421 154 211 1.2E-20 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS07655 ee260840a0f5709c7e0ada0bd575f58d 222 SUPERFAMILY SSF52172 2 183 4.02E-24 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS07655 ee260840a0f5709c7e0ada0bd575f58d 222 Pfam PF00196 Bacterial regulatory proteins, luxR family 156 209 7.6E-21 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS07655 ee260840a0f5709c7e0ada0bd575f58d 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 171 187 4.8E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS07655 ee260840a0f5709c7e0ada0bd575f58d 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 187 199 4.8E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS07655 ee260840a0f5709c7e0ada0bd575f58d 222 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 171 4.8E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS07655 ee260840a0f5709c7e0ada0bd575f58d 222 Gene3D G3DSA:1.10.10.10 150 212 3.3E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS07655 ee260840a0f5709c7e0ada0bd575f58d 222 SMART SM00448 2 116 3.0E-17 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS07180 767491e2681c412f16c5cdb0545edacc 398 Gene3D G3DSA:3.40.50.300 16 255 6.5E-78 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07180 767491e2681c412f16c5cdb0545edacc 398 SMART SM00382 48 231 8.5E-12 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS07180 767491e2681c412f16c5cdb0545edacc 398 SUPERFAMILY SSF52540 22 262 5.46E-84 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07180 767491e2681c412f16c5cdb0545edacc 398 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS07180 767491e2681c412f16c5cdb0545edacc 398 Pfam PF00005 ABC transporter 40 181 6.3E-32 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS07180 767491e2681c412f16c5cdb0545edacc 398 Gene3D G3DSA:2.40.50.100 361 374 1.7E-8 T 11-11-2016 vm_RS07180 767491e2681c412f16c5cdb0545edacc 398 Gene3D G3DSA:2.40.50.100 259 297 1.7E-8 T 11-11-2016 vm_RS07180 767491e2681c412f16c5cdb0545edacc 398 Gene3D G3DSA:2.40.50.140 298 348 7.1E-6 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS07180 767491e2681c412f16c5cdb0545edacc 398 SUPERFAMILY SSF50331 256 375 1.6E-20 T 11-11-2016 IPR008995 Molybdate/tungstate binding, C-terminal vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 SUPERFAMILY SSF141868 377 624 6.02E-86 T 11-11-2016 IPR001633 EAL domain vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 Pfam PF00563 EAL domain 379 613 4.3E-72 T 11-11-2016 IPR001633 EAL domain vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 SMART SM00052 372 619 6.0E-113 T 11-11-2016 IPR001633 EAL domain vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 Gene3D G3DSA:3.20.20.450 375 624 5.2E-91 T 11-11-2016 IPR001633 EAL domain vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 Pfam PF01590 GAF domain 19 143 7.4E-6 T 11-11-2016 IPR003018 GAF domain GO:0005515 vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 SUPERFAMILY SSF55781 19 164 1.28E-19 T 11-11-2016 IPR029016 GAF domain-like vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 Pfam PF00990 Diguanylate cyclase, GGDEF domain 204 356 2.7E-35 T 11-11-2016 IPR000160 GGDEF domain vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 Gene3D G3DSA:3.30.70.270 205 366 9.0E-37 T 11-11-2016 vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 204 358 2.7E-25 T 11-11-2016 IPR000160 GGDEF domain vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 SMART SM00065 14 161 3.0E-5 T 11-11-2016 IPR003018 GAF domain GO:0005515 vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 Gene3D G3DSA:3.30.450.40 17 168 9.7E-11 T 11-11-2016 IPR029016 GAF domain-like vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 SUPERFAMILY SSF55073 208 356 9.42E-32 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS06445 eb4083db166da7d087bdf1a2681f001d 625 SMART SM00267 192 362 2.5E-31 T 11-11-2016 IPR000160 GGDEF domain vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 PIRSF PIRSF000099 1 427 1.1E-168 T 11-11-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 Gene3D G3DSA:3.40.50.620 236 305 1.8E-4 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 33 423 8.9E-165 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 227 259 - T 11-11-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 4 424 42.08 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 PRINTS PR00083 Histidinol dehydrogenase signature 195 220 5.9E-101 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 PRINTS PR00083 Histidinol dehydrogenase signature 33 57 5.9E-101 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 PRINTS PR00083 Histidinol dehydrogenase signature 134 160 5.9E-101 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 PRINTS PR00083 Histidinol dehydrogenase signature 227 248 5.9E-101 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 PRINTS PR00083 Histidinol dehydrogenase signature 317 342 5.9E-101 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 PRINTS PR00083 Histidinol dehydrogenase signature 358 376 5.9E-101 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 PRINTS PR00083 Histidinol dehydrogenase signature 165 191 5.9E-101 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 PRINTS PR00083 Histidinol dehydrogenase signature 249 268 5.9E-101 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 SUPERFAMILY SSF53720 4 424 7.06E-92 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 Pfam PF00815 Histidinol dehydrogenase 26 424 2.3E-170 T 11-11-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 vm_RS09195 69f08d1de6f9738e25d0dadd32761177 431 Gene3D G3DSA:3.40.50.1980 28 235 3.8E-82 T 11-11-2016 vm_RS03510 dbdab06a06e5285d7cbbccfee907de97 147 Pfam PF05618 Putative ATP-dependant zinc protease 6 141 9.7E-48 T 11-11-2016 vm_RS03510 dbdab06a06e5285d7cbbccfee907de97 147 SUPERFAMILY SSF50630 6 140 2.2E-46 T 11-11-2016 IPR021109 Aspartic peptidase domain vm_RS03510 dbdab06a06e5285d7cbbccfee907de97 147 Gene3D G3DSA:2.40.70.10 3 134 8.2E-46 T 11-11-2016 IPR021109 Aspartic peptidase domain vm_RS13715 9a772345ff2d083df76a6481dc329235 468 Gene3D G3DSA:3.40.50.300 198 461 7.6E-106 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13715 9a772345ff2d083df76a6481dc329235 468 SUPERFAMILY SSF52540 201 272 2.17E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13715 9a772345ff2d083df76a6481dc329235 468 SUPERFAMILY SSF52540 299 452 2.17E-51 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13715 9a772345ff2d083df76a6481dc329235 468 SUPERFAMILY SSF48024 22 133 9.29E-37 T 11-11-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 vm_RS13715 9a772345ff2d083df76a6481dc329235 468 Gene3D G3DSA:1.10.860.10 24 125 8.4E-38 T 11-11-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal vm_RS13715 9a772345ff2d083df76a6481dc329235 468 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 24 461 5.1E-175 T 11-11-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 vm_RS13715 9a772345ff2d083df76a6481dc329235 468 Pfam PF03796 DnaB-like helicase C terminal domain 203 459 1.6E-115 T 11-11-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 vm_RS13715 9a772345ff2d083df76a6481dc329235 468 Pfam PF00772 DnaB-like helicase N terminal domain 24 124 3.5E-35 T 11-11-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 vm_RS07340 07fa6f952cc8675880ba53652ff3b977 278 Pfam PF02634 FdhD/NarQ family 35 266 2.0E-74 T 11-11-2016 IPR003786 Protein FdhD GO:0016783 vm_RS07340 07fa6f952cc8675880ba53652ff3b977 278 Gene3D G3DSA:3.40.140.10 132 272 2.6E-54 T 11-11-2016 vm_RS07340 07fa6f952cc8675880ba53652ff3b977 278 PIRSF PIRSF015626 1 271 1.2E-104 T 11-11-2016 IPR003786 Protein FdhD GO:0016783 vm_RS07340 07fa6f952cc8675880ba53652ff3b977 278 Gene3D G3DSA:3.10.20.10 36 118 3.2E-16 T 11-11-2016 vm_RS07340 07fa6f952cc8675880ba53652ff3b977 278 SUPERFAMILY SSF53927 15 267 7.22E-73 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 vm_RS07340 07fa6f952cc8675880ba53652ff3b977 278 Hamap MF_00187 Sulfurtransferase FdhD [fdhD]. 11 267 26.177 T 11-11-2016 IPR003786 Protein FdhD GO:0016783 vm_RS06085 148ae6f772db75e2734e67c7a086387e 305 SUPERFAMILY SSF53850 90 298 8.96E-31 T 11-11-2016 vm_RS06085 148ae6f772db75e2734e67c7a086387e 305 Pfam PF03466 LysR substrate binding domain 89 295 2.3E-29 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS06085 148ae6f772db75e2734e67c7a086387e 305 Gene3D G3DSA:1.10.10.10 6 83 9.3E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS06085 148ae6f772db75e2734e67c7a086387e 305 SUPERFAMILY SSF46785 4 108 3.64E-18 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS06085 148ae6f772db75e2734e67c7a086387e 305 Gene3D G3DSA:3.40.190.10 91 183 2.5E-17 T 11-11-2016 vm_RS06085 148ae6f772db75e2734e67c7a086387e 305 Gene3D G3DSA:3.40.190.10 184 259 1.5E-11 T 11-11-2016 vm_RS06085 148ae6f772db75e2734e67c7a086387e 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 28 38 2.3E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS06085 148ae6f772db75e2734e67c7a086387e 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 17 28 2.3E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS06085 148ae6f772db75e2734e67c7a086387e 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 49 2.3E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS06085 148ae6f772db75e2734e67c7a086387e 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 6.3E-14 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11255 82b191c970ed2bed128038c3df3926f2 123 TIGRFAM TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit 39 120 8.4E-29 T 11-11-2016 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0071436 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 vm_RS11255 82b191c970ed2bed128038c3df3926f2 123 Hamap MF_00404 Probable oxaloacetate decarboxylase gamma chain [oadG]. 11 123 33.694 T 11-11-2016 IPR023424 Oxaloacetate decarboxylase gamma chain, probable GO:0008948 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 vm_RS11255 82b191c970ed2bed128038c3df3926f2 123 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 43 115 4.2E-21 T 11-11-2016 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0071436 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 vm_RS09980 7c4c1fbea779a78da77e00f2d7e7bafe 329 SMART SM00729 14 211 1.3E-4 T 11-11-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 vm_RS09980 7c4c1fbea779a78da77e00f2d7e7bafe 329 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 6 329 1.4E-104 T 11-11-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 vm_RS09980 7c4c1fbea779a78da77e00f2d7e7bafe 329 SUPERFAMILY SSF102114 7 286 3.01E-68 T 11-11-2016 vm_RS09980 7c4c1fbea779a78da77e00f2d7e7bafe 329 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 5 329 37.303 T 11-11-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 vm_RS09980 7c4c1fbea779a78da77e00f2d7e7bafe 329 Pfam PF04055 Radical SAM superfamily 19 181 9.2E-26 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS09980 7c4c1fbea779a78da77e00f2d7e7bafe 329 Gene3D G3DSA:3.20.20.70 5 307 2.0E-71 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS09980 7c4c1fbea779a78da77e00f2d7e7bafe 329 Pfam PF13353 4Fe-4S single cluster domain 23 125 8.6E-9 T 11-11-2016 vm_RS09980 7c4c1fbea779a78da77e00f2d7e7bafe 329 Pfam PF06463 Molybdenum Cofactor Synthesis C 186 312 1.5E-40 T 11-11-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|Reactome: R-HSA-947581 vm_RS07920 c567fb5da75c4ad69a4dd9462862ba3b 160 Gene3D G3DSA:2.40.160.20 6 159 4.3E-18 T 11-11-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 vm_RS07920 c567fb5da75c4ad69a4dd9462862ba3b 160 Pfam PF13505 Outer membrane protein beta-barrel domain 6 159 1.3E-15 T 11-11-2016 IPR027385 Outer membrane protein beta-barrel vm_RS07920 c567fb5da75c4ad69a4dd9462862ba3b 160 SUPERFAMILY SSF56925 17 159 4.45E-21 T 11-11-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 vm_RS06335 b929cb12c9eb93081e0445cb40b5c449 336 SMART SM00354 1 71 1.9E-37 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS06335 b929cb12c9eb93081e0445cb40b5c449 336 SUPERFAMILY SSF53822 60 332 8.25E-95 T 11-11-2016 IPR028082 Periplasmic binding protein-like I vm_RS06335 b929cb12c9eb93081e0445cb40b5c449 336 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.8E-20 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS06335 b929cb12c9eb93081e0445cb40b5c449 336 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 2.0E-6 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS06335 b929cb12c9eb93081e0445cb40b5c449 336 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 2.0E-6 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS06335 b929cb12c9eb93081e0445cb40b5c449 336 Hamap MF_01277 HTH-type transcriptional repressor PurR [purR]. 1 334 64.63 T 11-11-2016 IPR023588 Transcription regulator HTH, PurR GO:0006355 vm_RS06335 b929cb12c9eb93081e0445cb40b5c449 336 Pfam PF13377 Periplasmic binding protein-like domain 170 330 1.7E-44 T 11-11-2016 vm_RS06335 b929cb12c9eb93081e0445cb40b5c449 336 Gene3D G3DSA:1.10.260.40 2 53 3.2E-25 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS06335 b929cb12c9eb93081e0445cb40b5c449 336 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-11-2016 vm_RS06335 b929cb12c9eb93081e0445cb40b5c449 336 Gene3D G3DSA:3.40.50.2300 174 311 4.1E-56 T 11-11-2016 vm_RS06335 b929cb12c9eb93081e0445cb40b5c449 336 Gene3D G3DSA:3.40.50.2300 54 173 1.7E-44 T 11-11-2016 vm_RS06335 b929cb12c9eb93081e0445cb40b5c449 336 SUPERFAMILY SSF47413 1 59 1.85E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS00730 9b0bb4c6151702caf87b5274d326b8e4 220 SUPERFAMILY SSF52402 1 215 4.19E-50 T 11-11-2016 vm_RS00730 9b0bb4c6151702caf87b5274d326b8e4 220 Gene3D G3DSA:3.90.1490.10 145 203 1.7E-10 T 11-11-2016 vm_RS00730 9b0bb4c6151702caf87b5274d326b8e4 220 Pfam PF01902 Diphthamide synthase 3 212 7.0E-22 T 11-11-2016 IPR002761 Diphthamide synthase domain MetaCyc: PWY-6482|MetaCyc: PWY-7546|Reactome: R-HSA-5358493 vm_RS00730 9b0bb4c6151702caf87b5274d326b8e4 220 Gene3D G3DSA:3.40.50.620 1 141 1.5E-21 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS04205 e64f8e959d99d4819495bf9640d4321b 115 SUPERFAMILY SSF52833 2 114 1.68E-35 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS04205 e64f8e959d99d4819495bf9640d4321b 115 Gene3D G3DSA:3.40.30.10 2 114 4.7E-44 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS04205 e64f8e959d99d4819495bf9640d4321b 115 Pfam PF03960 ArsC family 6 112 3.3E-18 T 11-11-2016 IPR006660 Arsenate reductase-like vm_RS04205 e64f8e959d99d4819495bf9640d4321b 115 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 3 112 1.2E-32 T 11-11-2016 IPR006504 Transcriptional regulator Spx/MgsR vm_RS07765 80f6f5bb227aad57d62944e833dcce0a 215 Gene3D G3DSA:3.90.850.10 7 212 1.7E-41 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 vm_RS07765 80f6f5bb227aad57d62944e833dcce0a 215 SUPERFAMILY SSF56529 7 207 5.89E-42 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 vm_RS07765 80f6f5bb227aad57d62944e833dcce0a 215 TIGRFAM TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit 7 210 1.1E-87 T 11-11-2016 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit GO:0008704|GO:0018800 KEGG: 00350+5.3.3.10+4.1.1.68 vm_RS07765 80f6f5bb227aad57d62944e833dcce0a 215 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 8 208 4.0E-30 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 PIRSF PIRSF002799 4 778 0.0 T 11-11-2016 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 Pfam PF00912 Transglycosylase 177 348 6.3E-58 T 11-11-2016 IPR001264 Glycosyl transferase, family 51 vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 SUPERFAMILY SSF53955 172 370 1.38E-67 T 11-11-2016 IPR023346 Lysozyme-like domain vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 Gene3D G3DSA:1.10.3810.10 174 350 8.1E-66 T 11-11-2016 vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 SUPERFAMILY SSF56601 330 352 2.25E-111 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 SUPERFAMILY SSF56601 380 772 2.25E-111 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 Gene3D G3DSA:3.30.2060.10 79 168 6.2E-30 T 11-11-2016 vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 181 715 2.7E-158 T 11-11-2016 vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 Gene3D G3DSA:1.20.5.100 25 63 4.8E-5 T 11-11-2016 vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 Pfam PF14814 Bifunctional transglycosylase second domain 81 165 1.8E-27 T 11-11-2016 IPR028166 Bifunctional transglycosylase second domain KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 Pfam PF00905 Penicillin binding protein transpeptidase domain 440 679 4.7E-23 T 11-11-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 36 759 0.0 T 11-11-2016 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00500+2.4.1.12|KEGG: 00550+2.4.1.129|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 vm_RS12185 a35a052bf6fa469b1ebc47161550664f 778 Gene3D G3DSA:3.40.710.10 351 757 1.1E-110 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS07305 0c1e39419e606d6804f1458d3741bf99 240 Pfam PF00005 ABC transporter 26 164 1.5E-27 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS07305 0c1e39419e606d6804f1458d3741bf99 240 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS07305 0c1e39419e606d6804f1458d3741bf99 240 SUPERFAMILY SSF52540 5 216 3.26E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07305 0c1e39419e606d6804f1458d3741bf99 240 SMART SM00382 29 201 1.4E-9 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS07305 0c1e39419e606d6804f1458d3741bf99 240 Gene3D G3DSA:3.40.50.300 3 217 1.2E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12270 adf43d6d76c350fb91e80bf7c4bb0435 107 Pfam PF02021 Uncharacterised protein family UPF0102 1 90 1.1E-26 T 11-11-2016 IPR003509 Uncharacterised protein family UPF0102 vm_RS12270 adf43d6d76c350fb91e80bf7c4bb0435 107 Hamap MF_00048 UPF0102 protein YraN [yraN]. 1 103 17.975 T 11-11-2016 IPR003509 Uncharacterised protein family UPF0102 vm_RS12270 adf43d6d76c350fb91e80bf7c4bb0435 107 SUPERFAMILY SSF52980 2 95 6.08E-16 T 11-11-2016 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 vm_RS12270 adf43d6d76c350fb91e80bf7c4bb0435 107 Gene3D G3DSA:3.40.1350.10 1 104 3.4E-34 T 11-11-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 Reactome: R-HSA-6784531 vm_RS12270 adf43d6d76c350fb91e80bf7c4bb0435 107 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 2 105 3.9E-30 T 11-11-2016 IPR003509 Uncharacterised protein family UPF0102 vm_RS14640 f2629f57c39f41a60b23f7f2b63b7ecd 518 Gene3D G3DSA:3.40.190.10 124 284 1.8E-42 T 11-11-2016 vm_RS14640 f2629f57c39f41a60b23f7f2b63b7ecd 518 PIRSF PIRSF002741 21 501 6.3E-95 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 vm_RS14640 f2629f57c39f41a60b23f7f2b63b7ecd 518 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 72 93 - T 11-11-2016 IPR023765 Solute-binding protein family 5, conserved site vm_RS14640 f2629f57c39f41a60b23f7f2b63b7ecd 518 SUPERFAMILY SSF53850 26 516 1.3E-126 T 11-11-2016 vm_RS14640 f2629f57c39f41a60b23f7f2b63b7ecd 518 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 66 425 6.6E-89 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain vm_RS14640 f2629f57c39f41a60b23f7f2b63b7ecd 518 Gene3D G3DSA:3.10.105.10 285 486 1.5E-56 T 11-11-2016 vm_RS11685 2c623b19f68da911d27f96f1b23756a9 648 Gene3D G3DSA:1.10.1240.20 409 475 1.2E-25 T 11-11-2016 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 vm_RS11685 2c623b19f68da911d27f96f1b23756a9 648 Gene3D G3DSA:1.25.20.10 33 393 1.1E-104 T 11-11-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 vm_RS11685 2c623b19f68da911d27f96f1b23756a9 648 SUPERFAMILY SSF53955 485 643 4.88E-47 T 11-11-2016 IPR023346 Lysozyme-like domain vm_RS11685 2c623b19f68da911d27f96f1b23756a9 648 Pfam PF14718 Soluble lytic murein transglycosylase L domain 411 475 5.5E-21 T 11-11-2016 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 vm_RS11685 2c623b19f68da911d27f96f1b23756a9 648 SUPERFAMILY SSF48435 33 481 1.44E-121 T 11-11-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 vm_RS11685 2c623b19f68da911d27f96f1b23756a9 648 Pfam PF01464 Transglycosylase SLT domain 488 599 6.6E-30 T 11-11-2016 IPR008258 Transglycosylase SLT domain 1 vm_RS11685 2c623b19f68da911d27f96f1b23756a9 648 Gene3D G3DSA:1.10.530.10 481 638 1.7E-48 T 11-11-2016 vm_RS06820 8915073f6725fe31df069d6d54ed75b1 153 SMART SM01321 11 129 9.1E-38 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS06820 8915073f6725fe31df069d6d54ed75b1 153 Pfam PF01797 Transposase IS200 like 12 129 2.4E-36 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS06820 8915073f6725fe31df069d6d54ed75b1 153 Gene3D G3DSA:3.30.70.1290 3 132 3.2E-55 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS06820 8915073f6725fe31df069d6d54ed75b1 153 SUPERFAMILY SSF143422 1 129 3.14E-46 T 11-11-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 vm_RS01100 455c344b2e56f88dfff5df56ebd12a58 113 Gene3D G3DSA:3.10.50.30 28 109 1.2E-26 T 11-11-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 vm_RS01100 455c344b2e56f88dfff5df56ebd12a58 113 SUPERFAMILY SSF54534 33 109 1.31E-19 T 11-11-2016 vm_RS01100 455c344b2e56f88dfff5df56ebd12a58 113 PIRSF PIRSF006092 1 111 8.8E-27 T 11-11-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 vm_RS01100 455c344b2e56f88dfff5df56ebd12a58 113 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 73 89 - T 11-11-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 vm_RS01100 455c344b2e56f88dfff5df56ebd12a58 113 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 34 109 4.8E-23 T 11-11-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 vm_RS05120 46872edda656877b9b2b1dadee1dfe48 386 TIGRFAM TIGR00843 benE: benzoate transporter 9 376 1.1E-100 T 11-11-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 vm_RS05120 46872edda656877b9b2b1dadee1dfe48 386 Pfam PF03594 Benzoate membrane transport protein 5 379 1.0E-147 T 11-11-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 vm_RS02105 312d8cf3ae53b805166ff2c09ba792c1 297 Pfam PF00892 EamA-like transporter family 7 137 3.1E-12 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS02105 312d8cf3ae53b805166ff2c09ba792c1 297 Pfam PF00892 EamA-like transporter family 143 268 2.5E-10 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS02105 312d8cf3ae53b805166ff2c09ba792c1 297 SUPERFAMILY SSF103481 178 268 7.72E-12 T 11-11-2016 vm_RS02105 312d8cf3ae53b805166ff2c09ba792c1 297 SUPERFAMILY SSF103481 40 141 1.29E-14 T 11-11-2016 vm_RS01680 880a7e46703c9702d18e04406ea7bbd6 324 TIGRFAM TIGR00462 genX: EF-P lysine aminoacylase GenX 15 319 4.9E-127 T 11-11-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 vm_RS01680 880a7e46703c9702d18e04406ea7bbd6 324 Pfam PF00152 tRNA synthetases class II (D, K and N) 13 320 3.2E-44 T 11-11-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS01680 880a7e46703c9702d18e04406ea7bbd6 324 SUPERFAMILY SSF55681 10 322 2.19E-82 T 11-11-2016 vm_RS01680 880a7e46703c9702d18e04406ea7bbd6 324 Hamap MF_00174 Elongation factor P--(R)-beta-lysine ligase [epmA]. 1 324 53.147 T 11-11-2016 IPR004525 Elongation factor P--(R)-beta-lysine ligase GO:0004824|GO:0005524|GO:0005737|GO:0006430 vm_RS01680 880a7e46703c9702d18e04406ea7bbd6 324 Gene3D G3DSA:3.30.930.10 13 320 6.0E-70 T 11-11-2016 vm_RS01680 880a7e46703c9702d18e04406ea7bbd6 324 PRINTS PR00982 Lysyl-tRNA synthetase signature 98 115 7.3E-5 T 11-11-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 vm_RS01680 880a7e46703c9702d18e04406ea7bbd6 324 PRINTS PR00982 Lysyl-tRNA synthetase signature 30 40 7.3E-5 T 11-11-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 vm_RS03370 4ce29eea3270b57852b94cd5b9cc6d0e 271 Gene3D G3DSA:3.40.50.720 5 267 1.8E-54 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03370 4ce29eea3270b57852b94cd5b9cc6d0e 271 Pfam PF00899 ThiF family 26 267 1.8E-38 T 11-11-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 vm_RS03370 4ce29eea3270b57852b94cd5b9cc6d0e 271 SUPERFAMILY SSF69572 9 268 2.62E-64 T 11-11-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 vm_RS11250 a0cd278e2cbba5078793397210a25e4b 448 Pfam PF03390 2-hydroxycarboxylate transporter family 25 442 2.8E-148 T 11-11-2016 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 vm_RS11250 a0cd278e2cbba5078793397210a25e4b 448 PIRSF PIRSF005348 1 448 2.7E-163 T 11-11-2016 IPR004679 2-hydroxycarboxylate transporter GO:0008514|GO:0015711|GO:0016021 vm_RS03320 c317adcde98112d8c3c1cc529b884b74 304 Gene3D G3DSA:1.10.10.10 3 82 5.3E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS03320 c317adcde98112d8c3c1cc529b884b74 304 Gene3D G3DSA:3.40.190.10 93 178 1.2E-16 T 11-11-2016 vm_RS03320 c317adcde98112d8c3c1cc529b884b74 304 SUPERFAMILY SSF46785 3 84 2.49E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS03320 c317adcde98112d8c3c1cc529b884b74 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 3.6E-16 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS03320 c317adcde98112d8c3c1cc529b884b74 304 SUPERFAMILY SSF53850 92 298 1.52E-40 T 11-11-2016 vm_RS03320 c317adcde98112d8c3c1cc529b884b74 304 Pfam PF03466 LysR substrate binding domain 90 294 1.2E-47 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS03320 c317adcde98112d8c3c1cc529b884b74 304 Gene3D G3DSA:3.40.190.10 179 261 1.1E-15 T 11-11-2016 vm_RS14515 18be980f07f155c7f3ea1ddf7964879f 288 Pfam PF03755 YicC-like family, N-terminal region 2 154 1.8E-42 T 11-11-2016 IPR013527 YicC-like, N-terminal vm_RS14515 18be980f07f155c7f3ea1ddf7964879f 288 Pfam PF08340 Domain of unknown function (DUF1732) 204 288 5.3E-35 T 11-11-2016 IPR013551 Domain of unknown function DUF1732 vm_RS14515 18be980f07f155c7f3ea1ddf7964879f 288 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 288 1.5E-117 T 11-11-2016 IPR005229 Conserved hypothetical protein CHP00255 vm_RS13960 bc184ac342dc06f01961e9127f4a8e3c 164 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 3 154 1.0E-55 T 11-11-2016 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 vm_RS13960 bc184ac342dc06f01961e9127f4a8e3c 164 PIRSF PIRSF016548 3 164 3.3E-72 T 11-11-2016 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 SUPERFAMILY SSF55124 351 428 8.01E-21 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 433 520 5.9E-4 T 11-11-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 178 334 3.9E-45 T 11-11-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 484 500 - T 11-11-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 TIGRFAM TIGR02041 CysI: sulfite reductase (NADPH) hemoprotein, beta-component 24 565 1.5E-279 T 11-11-2016 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 Gene3D G3DSA:3.90.480.10 347 427 5.7E-62 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 Gene3D G3DSA:3.90.480.10 79 151 5.7E-62 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 SUPERFAMILY SSF56014 434 566 8.64E-32 T 11-11-2016 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 358 421 2.9E-13 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 84 143 5.1E-13 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 PRINTS PR00397 Sirohaem Fe-binding site signature 484 502 2.4E-8 T 11-11-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 PRINTS PR00397 Sirohaem Fe-binding site signature 435 453 2.4E-8 T 11-11-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 Gene3D G3DSA:3.30.413.10 154 344 1.6E-70 T 11-11-2016 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 Gene3D G3DSA:3.30.413.10 434 564 6.9E-34 T 11-11-2016 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 SUPERFAMILY SSF55124 19 150 4.91E-27 T 11-11-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 SUPERFAMILY SSF56014 154 349 3.79E-58 T 11-11-2016 vm_RS13655 73e9040122e38d0dcc60c30700eebfc5 577 Hamap MF_01540 Sulfite reductase [NADPH] hemoprotein beta-component [cysI]. 15 577 58.062 T 11-11-2016 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit GO:0004783|GO:0008652|GO:0009337|GO:0050661|GO:0051539|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 PIRSF PIRSF000149 1 331 4.8E-137 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 148 155 - T 11-11-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 1.6E-137 T 11-11-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 155 312 1.5E-71 T 11-11-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 SUPERFAMILY SSF55347 149 312 9.67E-81 T 11-11-2016 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 Gene3D G3DSA:3.30.360.10 159 314 3.8E-87 T 11-11-2016 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 Gene3D G3DSA:3.40.50.720 1 158 5.6E-80 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 SUPERFAMILY SSF51735 3 166 4.41E-69 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 SMART SM00846 3 150 6.2E-98 T 11-11-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 228 245 2.3E-46 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 268 283 2.3E-46 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 109 122 2.3E-46 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 144 162 2.3E-46 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 171 187 2.3E-46 T 11-11-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS04980 825f165ff4cdb83b00fe032d32bb5098 331 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 150 1.4E-61 T 11-11-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS03695 b8d10ecce789ef99b88783becb0679ea 107 Pfam PF00034 Cytochrome c 33 107 1.9E-10 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS03695 b8d10ecce789ef99b88783becb0679ea 107 SUPERFAMILY SSF46626 9 107 2.33E-22 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS03695 b8d10ecce789ef99b88783becb0679ea 107 Gene3D G3DSA:1.10.760.10 25 107 1.7E-26 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS14555 ba29eabf751bb7a112b5d97c3760398d 261 SMART SM00382 26 214 5.1E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS14555 ba29eabf751bb7a112b5d97c3760398d 261 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS14555 ba29eabf751bb7a112b5d97c3760398d 261 Gene3D G3DSA:3.40.50.300 4 230 5.5E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14555 ba29eabf751bb7a112b5d97c3760398d 261 SUPERFAMILY SSF52540 3 231 1.78E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14555 ba29eabf751bb7a112b5d97c3760398d 261 Pfam PF00005 ABC transporter 22 166 1.1E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS05400 41c92a64573f781caf65c347ec8adbd3 475 Pfam PF02706 Chain length determinant protein 8 148 1.7E-10 T 11-11-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 vm_RS14465 b48a836b153c9fa459139f17c082f638 55 Pfam PF00471 Ribosomal protein L33 7 53 5.6E-17 T 11-11-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS14465 b48a836b153c9fa459139f17c082f638 55 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 55 2.5E-25 T 11-11-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS14465 b48a836b153c9fa459139f17c082f638 55 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 5 53 14.747 T 11-11-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS14465 b48a836b153c9fa459139f17c082f638 55 ProSitePatterns PS00582 Ribosomal protein L33 signature. 21 40 - T 11-11-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS14465 b48a836b153c9fa459139f17c082f638 55 SUPERFAMILY SSF57829 1 53 2.69E-19 T 11-11-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 vm_RS10150 4625d5ce6c983fb2056dafa6abdb148b 264 Gene3D G3DSA:3.30.70.660 106 241 9.8E-47 T 11-11-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS10150 4625d5ce6c983fb2056dafa6abdb148b 264 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 2 238 2.7E-77 T 11-11-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS10150 4625d5ce6c983fb2056dafa6abdb148b 264 Gene3D G3DSA:3.30.70.580 1 104 1.3E-39 T 11-11-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS10150 4625d5ce6c983fb2056dafa6abdb148b 264 PIRSF PIRSF001430 1 254 1.8E-78 T 11-11-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS10150 4625d5ce6c983fb2056dafa6abdb148b 264 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 243 35.743 T 11-11-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS10150 4625d5ce6c983fb2056dafa6abdb148b 264 SUPERFAMILY SSF55120 1 256 1.87E-94 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS10150 4625d5ce6c983fb2056dafa6abdb148b 264 Pfam PF01416 tRNA pseudouridine synthase 8 103 5.7E-13 T 11-11-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS10150 4625d5ce6c983fb2056dafa6abdb148b 264 Pfam PF01416 tRNA pseudouridine synthase 144 244 8.7E-29 T 11-11-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS06255 dc9a652b90562873f9ced1fd5016c79a 208 SUPERFAMILY SSF48498 80 207 8.0E-43 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal vm_RS06255 dc9a652b90562873f9ced1fd5016c79a 208 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 57 3.0E-12 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS06255 dc9a652b90562873f9ced1fd5016c79a 208 Gene3D G3DSA:1.10.357.10 5 206 1.1E-38 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 vm_RS06255 dc9a652b90562873f9ced1fd5016c79a 208 SUPERFAMILY SSF46689 4 73 6.67E-18 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS06255 dc9a652b90562873f9ced1fd5016c79a 208 ProSitePatterns PS01081 TetR-type HTH domain signature. 23 54 - T 11-11-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site vm_RS06255 dc9a652b90562873f9ced1fd5016c79a 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 6.4E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS06255 dc9a652b90562873f9ced1fd5016c79a 208 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 6.4E-8 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS09795 eff5c6ef891e51f0f0b6dddcba4146f7 286 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 283 4.9E-95 T 11-11-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 Reactome: R-HSA-193368|Reactome: R-HSA-2046106|Reactome: R-HSA-389887|Reactome: R-HSA-390247|Reactome: R-HSA-75105 vm_RS09795 eff5c6ef891e51f0f0b6dddcba4146f7 286 Gene3D G3DSA:3.10.129.10 124 284 1.2E-58 T 11-11-2016 IPR029069 HotDog domain vm_RS09795 eff5c6ef891e51f0f0b6dddcba4146f7 286 Gene3D G3DSA:3.10.129.10 4 116 1.2E-46 T 11-11-2016 IPR029069 HotDog domain vm_RS09795 eff5c6ef891e51f0f0b6dddcba4146f7 286 SUPERFAMILY SSF54637 5 114 3.63E-40 T 11-11-2016 IPR029069 HotDog domain vm_RS09795 eff5c6ef891e51f0f0b6dddcba4146f7 286 Pfam PF13622 Thioesterase-like superfamily 33 282 2.9E-61 T 11-11-2016 vm_RS09795 eff5c6ef891e51f0f0b6dddcba4146f7 286 SUPERFAMILY SSF54637 116 283 6.49E-59 T 11-11-2016 IPR029069 HotDog domain vm_RS12030 abf5cf41ac33efd837eaac0fb54cf7f8 343 Pfam PF13609 Gram-negative porin 9 308 2.3E-29 T 11-11-2016 vm_RS12030 abf5cf41ac33efd837eaac0fb54cf7f8 343 Gene3D G3DSA:2.40.160.10 34 343 4.4E-58 T 11-11-2016 IPR023614 Porin domain vm_RS12030 abf5cf41ac33efd837eaac0fb54cf7f8 343 SUPERFAMILY SSF56935 34 343 8.24E-54 T 11-11-2016 vm_RS08235 1846c44afacae8d09bf8271eb8900a7c 158 SUPERFAMILY SSF52172 1 133 1.85E-21 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS08235 1846c44afacae8d09bf8271eb8900a7c 158 SMART SM00448 4 125 4.2E-12 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS08235 1846c44afacae8d09bf8271eb8900a7c 158 Pfam PF00072 Response regulator receiver domain 6 125 6.6E-15 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS08235 1846c44afacae8d09bf8271eb8900a7c 158 Gene3D G3DSA:3.40.50.2300 4 132 8.3E-23 T 11-11-2016 vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 4 527 52.107 T 11-11-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 5 529 3.2E-303 T 11-11-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 Gene3D G3DSA:3.30.70.870 395 463 2.0E-13 T 11-11-2016 vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 Gene3D G3DSA:3.40.50.300 10 283 2.4E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 PRINTS PR00315 GTP-binding elongation factor signature 65 73 3.3E-10 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 PRINTS PR00315 GTP-binding elongation factor signature 15 28 3.3E-10 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 PRINTS PR00315 GTP-binding elongation factor signature 85 95 3.3E-10 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 PRINTS PR00315 GTP-binding elongation factor signature 137 146 3.3E-10 T 11-11-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 SUPERFAMILY SSF52540 10 278 1.91E-85 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 SUPERFAMILY SSF50447 262 393 3.77E-28 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 Pfam PF00009 Elongation factor Tu GTP binding domain 13 278 1.1E-45 T 11-11-2016 vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 58 73 - T 11-11-2016 IPR031157 Tr-type G domain, conserved site vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 Pfam PF16658 Class II release factor RF3, C-terminal domain 387 514 1.5E-46 T 11-11-2016 IPR032090 Peptide chain release factor 3, C-terminal vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 153 2.4E-19 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 Pfam PF03144 Elongation factor Tu domain 2 314 380 7.6E-9 T 11-11-2016 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 Gene3D G3DSA:2.40.30.10 293 394 6.6E-25 T 11-11-2016 vm_RS11880 5540b23e1dcd321dd3184adcf34e2503 529 SUPERFAMILY SSF54980 393 468 3.02E-17 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS10315 c46f93732db29b8c2b8acd960de140ed 388 Gene3D G3DSA:3.50.50.60 5 183 2.1E-47 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS10315 c46f93732db29b8c2b8acd960de140ed 388 Gene3D G3DSA:3.50.50.60 268 351 2.1E-47 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS10315 c46f93732db29b8c2b8acd960de140ed 388 SUPERFAMILY SSF51905 5 178 6.15E-61 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS10315 c46f93732db29b8c2b8acd960de140ed 388 SUPERFAMILY SSF51905 267 379 6.15E-61 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS10315 c46f93732db29b8c2b8acd960de140ed 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 280 295 2.4E-20 T 11-11-2016 vm_RS10315 c46f93732db29b8c2b8acd960de140ed 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 295 311 2.4E-20 T 11-11-2016 vm_RS10315 c46f93732db29b8c2b8acd960de140ed 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 7 29 2.4E-20 T 11-11-2016 vm_RS10315 c46f93732db29b8c2b8acd960de140ed 388 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 2.4E-20 T 11-11-2016 vm_RS10315 c46f93732db29b8c2b8acd960de140ed 388 Pfam PF01494 FAD binding domain 6 335 5.6E-30 T 11-11-2016 IPR002938 FAD-binding domain GO:0071949 vm_RS10315 c46f93732db29b8c2b8acd960de140ed 388 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 7 385 5.1E-117 T 11-11-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 vm_RS14855 7b6f2e465d7808c2a771ecd3991fb9b4 85 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 11-11-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site Reactome: R-HSA-163210 vm_RS14855 7b6f2e465d7808c2a771ecd3991fb9b4 85 Hamap MF_01396 ATP synthase subunit c [atpH]. 8 76 14.039 T 11-11-2016 vm_RS14855 7b6f2e465d7808c2a771ecd3991fb9b4 85 Gene3D G3DSA:1.20.20.10 2 78 2.5E-32 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 vm_RS14855 7b6f2e465d7808c2a771ecd3991fb9b4 85 PRINTS PR00124 ATP synthase C subunit signature 11 30 1.8E-6 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 vm_RS14855 7b6f2e465d7808c2a771ecd3991fb9b4 85 PRINTS PR00124 ATP synthase C subunit signature 49 74 1.8E-6 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 vm_RS14855 7b6f2e465d7808c2a771ecd3991fb9b4 85 PRINTS PR00124 ATP synthase C subunit signature 32 47 1.8E-6 T 11-11-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 Reactome: R-HSA-163210 vm_RS14855 7b6f2e465d7808c2a771ecd3991fb9b4 85 SUPERFAMILY SSF81333 3 78 3.4E-19 T 11-11-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 vm_RS14855 7b6f2e465d7808c2a771ecd3991fb9b4 85 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 3.5E-30 T 11-11-2016 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 vm_RS14855 7b6f2e465d7808c2a771ecd3991fb9b4 85 Pfam PF00137 ATP synthase subunit C 10 72 2.5E-10 T 11-11-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 vm_RS06100 1be15cb735ac3f85c0dc3e461796029a 861 Pfam PF17137 Domain of unknown function (DUF5110) 682 757 5.6E-16 T 11-11-2016 IPR033403 Domain of unknown function DUF5110 vm_RS06100 1be15cb735ac3f85c0dc3e461796029a 861 Pfam PF01055 Glycosyl hydrolases family 31 421 665 3.7E-54 T 11-11-2016 IPR000322 Glycoside hydrolase family 31 GO:0004553|GO:0005975 vm_RS06100 1be15cb735ac3f85c0dc3e461796029a 861 SUPERFAMILY SSF74650 43 293 7.85E-27 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 vm_RS06100 1be15cb735ac3f85c0dc3e461796029a 861 Pfam PF16338 Domain of unknown function (DUF4968) 52 150 2.6E-7 T 11-11-2016 IPR032513 Alpha-glucosidase, domain of unknown function DUF4968 vm_RS06100 1be15cb735ac3f85c0dc3e461796029a 861 SUPERFAMILY SSF51011 571 660 1.51E-14 T 11-11-2016 vm_RS06100 1be15cb735ac3f85c0dc3e461796029a 861 SUPERFAMILY SSF51445 296 569 6.32E-28 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS00450 1c44d45a2f89b34a56acaceab74dbcf3 284 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 1 284 29.493 T 11-11-2016 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 vm_RS00450 1c44d45a2f89b34a56acaceab74dbcf3 284 Pfam PF01040 UbiA prenyltransferase family 24 266 2.1E-66 T 11-11-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 vm_RS00450 1c44d45a2f89b34a56acaceab74dbcf3 284 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 8 283 4.2E-106 T 11-11-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 Reactome: R-HSA-1268020|Reactome: R-HSA-2142789 vm_RS02835 95b4cc107c5e15c776690c29cc5cace3 65 Gene3D G3DSA:3.30.50.10 2 64 3.1E-26 T 11-11-2016 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 vm_RS02835 95b4cc107c5e15c776690c29cc5cace3 65 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 4 60 18.592 T 11-11-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 vm_RS02835 95b4cc107c5e15c776690c29cc5cace3 65 SUPERFAMILY SSF57716 5 63 1.07E-21 T 11-11-2016 vm_RS02835 95b4cc107c5e15c776690c29cc5cace3 65 Pfam PF03884 Domain of unknown function (DUF329) 8 58 1.2E-24 T 11-11-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 vm_RS08035 31b662d75c1eea7bf628ce7c38ba9aab 365 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 155 251 2.1E-21 T 11-11-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 vm_RS08035 31b662d75c1eea7bf628ce7c38ba9aab 365 SUPERFAMILY SSF161098 155 346 5.63E-40 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS08035 31b662d75c1eea7bf628ce7c38ba9aab 365 Gene3D G3DSA:1.10.3720.10 155 359 7.1E-45 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS08035 31b662d75c1eea7bf628ce7c38ba9aab 365 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 173 349 2.4E-22 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS10335 85b10cc5479204662448726f6c543e87 291 SMART SM00116 76 125 0.0037 T 11-11-2016 IPR000644 CBS domain vm_RS10335 85b10cc5479204662448726f6c543e87 291 SMART SM00116 139 187 0.028 T 11-11-2016 IPR000644 CBS domain vm_RS10335 85b10cc5479204662448726f6c543e87 291 SMART SM01091 203 281 3.4E-29 T 11-11-2016 IPR005170 Transporter-associated domain vm_RS10335 85b10cc5479204662448726f6c543e87 291 Pfam PF00571 CBS domain 138 187 1.4E-6 T 11-11-2016 IPR000644 CBS domain vm_RS10335 85b10cc5479204662448726f6c543e87 291 Pfam PF00571 CBS domain 67 124 1.8E-8 T 11-11-2016 IPR000644 CBS domain vm_RS10335 85b10cc5479204662448726f6c543e87 291 Pfam PF03471 Transporter associated domain 204 279 1.4E-21 T 11-11-2016 IPR005170 Transporter-associated domain vm_RS10335 85b10cc5479204662448726f6c543e87 291 SUPERFAMILY SSF54631 54 190 5.61E-34 T 11-11-2016 vm_RS10335 85b10cc5479204662448726f6c543e87 291 SUPERFAMILY SSF56176 198 280 1.06E-21 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 vm_RS10335 85b10cc5479204662448726f6c543e87 291 Gene3D G3DSA:3.10.580.10 53 195 4.5E-25 T 11-11-2016 vm_RS10335 85b10cc5479204662448726f6c543e87 291 Gene3D G3DSA:3.30.465.10 196 280 6.6E-29 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 vm_RS09175 24c9a0811b1835b838e9a7cf01019796 245 SUPERFAMILY SSF51366 1 242 6.66E-64 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 vm_RS09175 24c9a0811b1835b838e9a7cf01019796 245 Gene3D G3DSA:3.20.20.70 1 242 6.5E-77 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS09175 24c9a0811b1835b838e9a7cf01019796 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 1 241 34.637 T 11-11-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 vm_RS09175 24c9a0811b1835b838e9a7cf01019796 245 Pfam PF00977 Histidine biosynthesis protein 1 234 3.4E-76 T 11-11-2016 IPR006062 Histidine biosynthesis GO:0000105 vm_RS09175 24c9a0811b1835b838e9a7cf01019796 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 2 238 2.1E-77 T 11-11-2016 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 vm_RS02640 ddcd6af0c1d774344f3fcc79ebbc3fa6 156 Pfam PF04246 Positive regulator of sigma(E), RseC/MucC 14 149 1.1E-32 T 11-11-2016 IPR007359 Positive regulator of sigma(E), RseC/MucC vm_RS02640 ddcd6af0c1d774344f3fcc79ebbc3fa6 156 PIRSF PIRSF004923 1 156 1.3E-39 T 11-11-2016 IPR026268 Protein RseC vm_RS08725 f5c7c9d59d8ef69548e315bcd2b44008 259 Gene3D G3DSA:3.30.460.10 106 191 5.1E-6 T 11-11-2016 vm_RS08725 f5c7c9d59d8ef69548e315bcd2b44008 259 SUPERFAMILY SSF81301 68 224 2.29E-15 T 11-11-2016 vm_RS08725 f5c7c9d59d8ef69548e315bcd2b44008 259 Pfam PF04607 Region found in RelA / SpoT proteins 107 206 1.8E-4 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 vm_RS11400 28000ebfd99b03a68fbfc89ed1d9bfc5 429 PRINTS PR00481 Cytosol aminopeptidase signature 212 233 1.1E-45 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 vm_RS11400 28000ebfd99b03a68fbfc89ed1d9bfc5 429 PRINTS PR00481 Cytosol aminopeptidase signature 299 314 1.1E-45 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 vm_RS11400 28000ebfd99b03a68fbfc89ed1d9bfc5 429 PRINTS PR00481 Cytosol aminopeptidase signature 249 270 1.1E-45 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 vm_RS11400 28000ebfd99b03a68fbfc89ed1d9bfc5 429 PRINTS PR00481 Cytosol aminopeptidase signature 271 291 1.1E-45 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 vm_RS11400 28000ebfd99b03a68fbfc89ed1d9bfc5 429 PRINTS PR00481 Cytosol aminopeptidase signature 190 207 1.1E-45 T 11-11-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 vm_RS11400 28000ebfd99b03a68fbfc89ed1d9bfc5 429 SUPERFAMILY SSF53187 104 427 6.28E-101 T 11-11-2016 vm_RS11400 28000ebfd99b03a68fbfc89ed1d9bfc5 429 Pfam PF12404 Peptidase 5 80 2.1E-34 T 11-11-2016 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 vm_RS11400 28000ebfd99b03a68fbfc89ed1d9bfc5 429 PIRSF PIRSF036388 1 429 5.9E-236 T 11-11-2016 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 vm_RS11400 28000ebfd99b03a68fbfc89ed1d9bfc5 429 Hamap MF_00504 Peptidase B [pepB]. 3 427 65.2 T 11-11-2016 IPR008330 Peptidase M17, peptidase B GO:0004177|GO:0005737|GO:0006508|GO:0008235|GO:0030145 KEGG: 00480+3.4.11.23 vm_RS11400 28000ebfd99b03a68fbfc89ed1d9bfc5 429 Gene3D G3DSA:3.40.630.10 105 428 4.7E-115 T 11-11-2016 vm_RS11400 28000ebfd99b03a68fbfc89ed1d9bfc5 429 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 109 421 7.3E-99 T 11-11-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 vm_RS11400 28000ebfd99b03a68fbfc89ed1d9bfc5 429 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 275 282 - T 11-11-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 vm_RS04965 d3c2459cfc372af8384f816959e5d116 272 Gene3D G3DSA:3.40.50.150 65 198 5.5E-21 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS04965 d3c2459cfc372af8384f816959e5d116 272 Pfam PF13649 Methyltransferase domain 90 161 1.6E-11 T 11-11-2016 vm_RS04965 d3c2459cfc372af8384f816959e5d116 272 PIRSF PIRSF018249 1 272 1.6E-83 T 11-11-2016 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 vm_RS04965 d3c2459cfc372af8384f816959e5d116 272 SUPERFAMILY SSF53335 5 250 8.07E-44 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS12095 40bf95dd5176af2724b6860dcb7d7089 556 Gene3D G3DSA:3.90.76.10 43 192 2.3E-39 T 11-11-2016 vm_RS12095 40bf95dd5176af2724b6860dcb7d7089 556 Gene3D G3DSA:3.10.105.10 270 511 6.1E-50 T 11-11-2016 vm_RS12095 40bf95dd5176af2724b6860dcb7d7089 556 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 75 451 4.2E-76 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain vm_RS12095 40bf95dd5176af2724b6860dcb7d7089 556 SUPERFAMILY SSF53850 40 539 5.07E-106 T 11-11-2016 vm_RS12095 40bf95dd5176af2724b6860dcb7d7089 556 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 80 102 - T 11-11-2016 IPR023765 Solute-binding protein family 5, conserved site vm_RS12095 40bf95dd5176af2724b6860dcb7d7089 556 PIRSF PIRSF002741 7 531 7.4E-67 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 vm_RS12595 82b2ecb72009aa2f24cf802a13d14316 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 44 2.0E-10 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12595 82b2ecb72009aa2f24cf802a13d14316 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.588 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12595 82b2ecb72009aa2f24cf802a13d14316 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.6E-16 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12595 82b2ecb72009aa2f24cf802a13d14316 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.6E-16 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12595 82b2ecb72009aa2f24cf802a13d14316 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.6E-16 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12595 82b2ecb72009aa2f24cf802a13d14316 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.6E-16 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12595 82b2ecb72009aa2f24cf802a13d14316 71 Pfam PF01165 Ribosomal protein S21 4 56 3.6E-23 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12595 82b2ecb72009aa2f24cf802a13d14316 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 11-11-2016 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS12595 82b2ecb72009aa2f24cf802a13d14316 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 7.2E-25 T 11-11-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS11955 26c2267cf1dc5b554f29a9c806685caa 312 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 32 179 2.1E-57 T 11-11-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 vm_RS11955 26c2267cf1dc5b554f29a9c806685caa 312 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 251 308 1.3E-18 T 11-11-2016 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS11955 26c2267cf1dc5b554f29a9c806685caa 312 Gene3D G3DSA:2.30.130.10 250 310 2.4E-25 T 11-11-2016 IPR015947 PUA-like domain vm_RS11955 26c2267cf1dc5b554f29a9c806685caa 312 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 11 218 2.6E-86 T 11-11-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS11955 26c2267cf1dc5b554f29a9c806685caa 312 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 180 247 2.1E-24 T 11-11-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 vm_RS11955 26c2267cf1dc5b554f29a9c806685caa 312 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 10 308 18.956 T 11-11-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS11955 26c2267cf1dc5b554f29a9c806685caa 312 SUPERFAMILY SSF55120 9 247 2.16E-82 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS11955 26c2267cf1dc5b554f29a9c806685caa 312 SUPERFAMILY SSF88697 250 309 1.64E-14 T 11-11-2016 IPR015947 PUA-like domain vm_RS07375 67247709f382788b5b034b0f528e3571 202 SUPERFAMILY SSF54862 1 183 8.06E-48 T 11-11-2016 vm_RS07375 67247709f382788b5b034b0f528e3571 202 Gene3D G3DSA:3.30.70.20 65 120 4.8E-22 T 11-11-2016 vm_RS07375 67247709f382788b5b034b0f528e3571 202 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 89 100 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS07375 67247709f382788b5b034b0f528e3571 202 Pfam PF13247 4Fe-4S dicluster domain 54 125 1.5E-10 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain vm_RS07375 67247709f382788b5b034b0f528e3571 202 Gene3D G3DSA:3.30.70.20 3 64 1.0E-20 T 11-11-2016 vm_RS07375 67247709f382788b5b034b0f528e3571 202 Gene3D G3DSA:3.30.70.20 121 181 1.0E-20 T 11-11-2016 vm_RS15105 4324c913d2b905a571afecb28fd79bbe 117 Gene3D G3DSA:3.30.565.10 1 117 1.2E-52 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS15105 4324c913d2b905a571afecb28fd79bbe 117 SUPERFAMILY SSF55874 1 117 1.27E-42 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS15105 4324c913d2b905a571afecb28fd79bbe 117 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1 101 9.9E-13 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS14225 edb8ced79c173701b1e00572177ac933 711 Gene3D G3DSA:3.40.640.10 130 423 5.3E-100 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS14225 edb8ced79c173701b1e00572177ac933 711 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 130 545 8.4E-187 T 11-11-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 vm_RS14225 edb8ced79c173701b1e00572177ac933 711 SUPERFAMILY SSF55904 567 708 2.09E-42 T 11-11-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 vm_RS14225 edb8ced79c173701b1e00572177ac933 711 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 14 124 9.2E-29 T 11-11-2016 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 vm_RS14225 edb8ced79c173701b1e00572177ac933 711 Gene3D G3DSA:3.90.100.10 588 709 8.6E-36 T 11-11-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 vm_RS14225 edb8ced79c173701b1e00572177ac933 711 SUPERFAMILY SSF53383 130 562 2.55E-106 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS14225 edb8ced79c173701b1e00572177ac933 711 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 570 700 2.3E-44 T 11-11-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 vm_RS14225 edb8ced79c173701b1e00572177ac933 711 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 362 376 - T 11-11-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 vm_RS14225 edb8ced79c173701b1e00572177ac933 711 Gene3D G3DSA:3.90.1150.10 426 587 2.5E-66 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS14225 edb8ced79c173701b1e00572177ac933 711 PIRSF PIRSF009393 1 711 2.3E-287 T 11-11-2016 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 vm_RS09320 4d98e0f8312a3a2427a033f06f9fc1cc 206 SUPERFAMILY SSF103642 186 205 6.87E-7 T 11-11-2016 vm_RS09320 4d98e0f8312a3a2427a033f06f9fc1cc 206 Pfam PF03695 Uncharacterised protein family (UPF0149) 18 154 1.1E-8 T 11-11-2016 IPR011978 Uncharacterised protein family UPF0149 vm_RS09320 4d98e0f8312a3a2427a033f06f9fc1cc 206 Pfam PF02810 SEC-C motif 188 206 2.0E-9 T 11-11-2016 IPR004027 SEC-C motif vm_RS09320 4d98e0f8312a3a2427a033f06f9fc1cc 206 Gene3D G3DSA:3.10.450.50 164 206 1.0E-11 T 11-11-2016 IPR032710 NTF2-like domain vm_RS05735 5c09aa301fe0222041d877481ee09c23 328 Gene3D G3DSA:2.40.128.140 9 324 2.0E-100 T 11-11-2016 vm_RS05735 5c09aa301fe0222041d877481ee09c23 328 Pfam PF09982 Uncharacterized protein conserved in bacteria (DUF2219) 28 325 7.0E-84 T 11-11-2016 IPR018707 Protein of unknown function DUF2219 vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 SMART SM00388 305 371 7.8E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 Pfam PF00512 His Kinase A (phospho-acceptor) domain 305 367 1.2E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 SMART SM00304 252 304 3.3E-5 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 Gene3D G3DSA:3.30.565.10 394 527 3.1E-32 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 SUPERFAMILY SSF55874 358 534 3.67E-32 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 PRINTS PR00344 Bacterial sensor protein C-terminal signature 487 505 5.7E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 PRINTS PR00344 Bacterial sensor protein C-terminal signature 452 466 5.7E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 PRINTS PR00344 Bacterial sensor protein C-terminal signature 512 525 5.7E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 PRINTS PR00344 Bacterial sensor protein C-terminal signature 470 480 5.7E-13 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 418 527 6.2E-21 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 Gene3D G3DSA:1.10.287.130 295 367 4.1E-16 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 SMART SM00387 417 528 5.8E-32 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS10580 c41806c128ba53b65f6e2274ecb043b2 541 SUPERFAMILY SSF47384 288 369 1.33E-14 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS00665 a9cd5444d92bcf358793c7cfc6802a41 207 Pfam PF07947 YhhN-like protein 26 204 3.2E-30 T 11-11-2016 IPR012506 YhhN-like GO:0016021 vm_RS15120 0cb93ec81cc83593a79944ce745114c3 60 Gene3D G3DSA:3.40.50.670 4 60 1.3E-19 T 11-11-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 vm_RS15120 0cb93ec81cc83593a79944ce745114c3 60 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 12 60 2.6E-24 T 11-11-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 vm_RS15120 0cb93ec81cc83593a79944ce745114c3 60 SUPERFAMILY SSF56719 10 58 2.14E-13 T 11-11-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 Reactome: R-HSA-4615885 vm_RS03205 5797c93c6c9e81fcf080509a9c76de1c 406 Hamap MF_00740 Phosphopentomutase [deoB]. 1 406 54.054 T 11-11-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 vm_RS03205 5797c93c6c9e81fcf080509a9c76de1c 406 Gene3D G3DSA:3.30.70.1250 115 234 7.5E-50 T 11-11-2016 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 vm_RS03205 5797c93c6c9e81fcf080509a9c76de1c 406 SUPERFAMILY SSF143856 118 234 2.09E-47 T 11-11-2016 IPR024052 Phosphopentomutase DeoB cap domain GO:0008973 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 vm_RS03205 5797c93c6c9e81fcf080509a9c76de1c 406 Pfam PF01676 Metalloenzyme superfamily 2 397 1.3E-42 T 11-11-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 vm_RS03205 5797c93c6c9e81fcf080509a9c76de1c 406 TIGRFAM TIGR01696 deoB: phosphopentomutase 3 403 4.6E-178 T 11-11-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 vm_RS03205 5797c93c6c9e81fcf080509a9c76de1c 406 Gene3D G3DSA:3.40.720.10 239 406 2.7E-72 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 vm_RS03205 5797c93c6c9e81fcf080509a9c76de1c 406 Gene3D G3DSA:3.40.720.10 1 114 2.7E-72 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 vm_RS03205 5797c93c6c9e81fcf080509a9c76de1c 406 SUPERFAMILY SSF53649 1 115 9.68E-69 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 vm_RS03205 5797c93c6c9e81fcf080509a9c76de1c 406 SUPERFAMILY SSF53649 236 406 9.68E-69 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 vm_RS03205 5797c93c6c9e81fcf080509a9c76de1c 406 PIRSF PIRSF001491 1 406 1.6E-160 T 11-11-2016 IPR010045 Phosphopentomutase GO:0000287|GO:0005737|GO:0008973|GO:0009117|GO:0043094 KEGG: 00030+5.4.2.7|KEGG: 00230+5.4.2.7|MetaCyc: PWY-7180 vm_RS01575 e893956987020d5596739a364d7bd125 335 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 3.4E-20 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS01575 e893956987020d5596739a364d7bd125 335 SUPERFAMILY SSF47413 1 59 2.16E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS01575 e893956987020d5596739a364d7bd125 335 Gene3D G3DSA:1.10.260.40 1 57 2.6E-24 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS01575 e893956987020d5596739a364d7bd125 335 SUPERFAMILY SSF53822 60 332 2.94E-91 T 11-11-2016 IPR028082 Periplasmic binding protein-like I vm_RS01575 e893956987020d5596739a364d7bd125 335 ProSitePatterns PS00356 LacI-type HTH domain signature. 4 22 - T 11-11-2016 vm_RS01575 e893956987020d5596739a364d7bd125 335 SMART SM00354 1 71 4.8E-33 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS01575 e893956987020d5596739a364d7bd125 335 Gene3D G3DSA:3.40.50.2300 58 167 4.1E-34 T 11-11-2016 vm_RS01575 e893956987020d5596739a364d7bd125 335 Pfam PF13377 Periplasmic binding protein-like domain 168 328 2.1E-43 T 11-11-2016 vm_RS01575 e893956987020d5596739a364d7bd125 335 Gene3D G3DSA:3.40.50.2300 168 330 6.2E-66 T 11-11-2016 vm_RS03060 df1acb75902fa4bf9e70475844e4f0e5 231 Hamap MF_01684 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [mtnN]. 2 230 47.656 T 11-11-2016 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 vm_RS03060 df1acb75902fa4bf9e70475844e4f0e5 231 Pfam PF01048 Phosphorylase superfamily 2 227 3.9E-50 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 vm_RS03060 df1acb75902fa4bf9e70475844e4f0e5 231 TIGRFAM TIGR01704 MTA/SAH-Nsdase: MTA/SAH nucleosidase 2 228 1.5E-99 T 11-11-2016 IPR010049 MTA/SAH nucleosidase GO:0008782|GO:0008930|GO:0009164|GO:0019509 KEGG: 00270+3.2.2.9|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 vm_RS03060 df1acb75902fa4bf9e70475844e4f0e5 231 Gene3D G3DSA:3.40.50.1580 1 230 2.4E-81 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 vm_RS03060 df1acb75902fa4bf9e70475844e4f0e5 231 SUPERFAMILY SSF53167 1 230 5.5E-74 T 11-11-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 vm_RS01955 b9ecddadf99024e593eb8b6a7e924405 209 Gene3D G3DSA:4.10.960.10 77 157 2.6E-38 T 11-11-2016 vm_RS01955 b9ecddadf99024e593eb8b6a7e924405 209 Gene3D G3DSA:2.40.30.10 158 207 8.2E-11 T 11-11-2016 vm_RS01955 b9ecddadf99024e593eb8b6a7e924405 209 Gene3D G3DSA:2.40.30.10 3 32 8.2E-11 T 11-11-2016 vm_RS01955 b9ecddadf99024e593eb8b6a7e924405 209 Pfam PF00297 Ribosomal protein L3 83 182 1.9E-16 T 11-11-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01955 b9ecddadf99024e593eb8b6a7e924405 209 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 11-11-2016 IPR019926 Ribosomal protein L3, conserved site vm_RS01955 b9ecddadf99024e593eb8b6a7e924405 209 SUPERFAMILY SSF50447 1 208 3.27E-84 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS01955 b9ecddadf99024e593eb8b6a7e924405 209 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 1 207 41.492 T 11-11-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS01955 b9ecddadf99024e593eb8b6a7e924405 209 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 3 204 4.3E-95 T 11-11-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS03105 6db84f19d701acac9fd18061db263758 238 SMART SM00862 156 232 2.4E-14 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS03105 6db84f19d701acac9fd18061db263758 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 2.7E-17 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS03105 6db84f19d701acac9fd18061db263758 238 Gene3D G3DSA:1.10.10.10 135 233 3.2E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS03105 6db84f19d701acac9fd18061db263758 238 SUPERFAMILY SSF46894 137 233 5.1E-21 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS03105 6db84f19d701acac9fd18061db263758 238 Pfam PF00072 Response regulator receiver domain 6 113 6.8E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS03105 6db84f19d701acac9fd18061db263758 238 SMART SM00448 4 114 3.6E-37 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS03105 6db84f19d701acac9fd18061db263758 238 SUPERFAMILY SSF52172 2 129 2.56E-36 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS03105 6db84f19d701acac9fd18061db263758 238 Gene3D G3DSA:3.40.50.2300 2 129 5.6E-36 T 11-11-2016 vm_RS03625 4d7fe7b26acb15101d65e37edd671f41 250 Pfam PF01255 Putative undecaprenyl diphosphate synthase 18 238 1.3E-80 T 11-11-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 vm_RS03625 4d7fe7b26acb15101d65e37edd671f41 250 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 184 201 - T 11-11-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 Reactome: R-HSA-446199|Reactome: R-HSA-4755609 vm_RS03625 4d7fe7b26acb15101d65e37edd671f41 250 Gene3D G3DSA:3.40.1180.10 6 245 5.1E-99 T 11-11-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 vm_RS03625 4d7fe7b26acb15101d65e37edd671f41 250 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 11 238 3.5E-94 T 11-11-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 vm_RS03625 4d7fe7b26acb15101d65e37edd671f41 250 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 11 239 39.241 T 11-11-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 vm_RS03625 4d7fe7b26acb15101d65e37edd671f41 250 SUPERFAMILY SSF64005 7 233 2.09E-87 T 11-11-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 vm_RS06750 344b911e1eff8e6eccee343c7c854df3 92 Pfam PF01386 Ribosomal L25p family 4 89 3.0E-23 T 11-11-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 vm_RS06750 344b911e1eff8e6eccee343c7c854df3 92 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 1 92 25.839 T 11-11-2016 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 vm_RS06750 344b911e1eff8e6eccee343c7c854df3 92 SUPERFAMILY SSF50715 1 92 4.53E-28 T 11-11-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 vm_RS06750 344b911e1eff8e6eccee343c7c854df3 92 Gene3D G3DSA:2.40.240.10 1 92 7.4E-31 T 11-11-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: R-HSA-2408517|Reactome: R-HSA-379716 vm_RS06750 344b911e1eff8e6eccee343c7c854df3 92 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 1 92 4.0E-49 T 11-11-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 vm_RS15690 b780adbd2e4acf465cbed4ab819388aa 287 Pfam PF07219 HemY protein N-terminus 1 89 4.6E-19 T 11-11-2016 IPR010817 HemY, N-terminal vm_RS15690 b780adbd2e4acf465cbed4ab819388aa 287 Gene3D G3DSA:1.25.40.10 44 170 2.0E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS15690 b780adbd2e4acf465cbed4ab819388aa 287 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 1 286 1.2E-90 T 11-11-2016 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 vm_RS15690 b780adbd2e4acf465cbed4ab819388aa 287 SUPERFAMILY SSF48452 42 168 8.06E-9 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS00320 44fb7ec079dbcb83bcd82257d8872f2e 313 Gene3D G3DSA:3.40.190.10 284 306 3.9E-18 T 11-11-2016 vm_RS00320 44fb7ec079dbcb83bcd82257d8872f2e 313 Gene3D G3DSA:3.40.190.10 92 184 3.9E-18 T 11-11-2016 vm_RS00320 44fb7ec079dbcb83bcd82257d8872f2e 313 Pfam PF03466 LysR substrate binding domain 97 307 2.4E-28 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS00320 44fb7ec079dbcb83bcd82257d8872f2e 313 SUPERFAMILY SSF53850 92 306 5.25E-46 T 11-11-2016 vm_RS00320 44fb7ec079dbcb83bcd82257d8872f2e 313 Gene3D G3DSA:3.40.190.10 185 280 4.5E-31 T 11-11-2016 vm_RS00320 44fb7ec079dbcb83bcd82257d8872f2e 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 3.3E-16 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS00320 44fb7ec079dbcb83bcd82257d8872f2e 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 1.2E-6 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS00320 44fb7ec079dbcb83bcd82257d8872f2e 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 1.2E-6 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS00320 44fb7ec079dbcb83bcd82257d8872f2e 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 1.2E-6 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS00320 44fb7ec079dbcb83bcd82257d8872f2e 313 SUPERFAMILY SSF46785 7 87 5.44E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS00320 44fb7ec079dbcb83bcd82257d8872f2e 313 Gene3D G3DSA:1.10.10.10 2 89 1.9E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS08990 9d83a28882c11e35436459b91bb3ae26 469 Gene3D G3DSA:3.20.20.70 17 274 9.6E-102 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS08990 9d83a28882c11e35436459b91bb3ae26 469 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 18 269 35.492 T 11-11-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 vm_RS08990 9d83a28882c11e35436459b91bb3ae26 469 SUPERFAMILY SSF51366 26 269 6.47E-81 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 vm_RS08990 9d83a28882c11e35436459b91bb3ae26 469 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 273 465 2.5E-55 T 11-11-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 vm_RS08990 9d83a28882c11e35436459b91bb3ae26 469 Gene3D G3DSA:3.20.20.70 275 463 8.3E-62 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS08990 9d83a28882c11e35436459b91bb3ae26 469 SUPERFAMILY SSF51366 272 467 9.42E-55 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 vm_RS08990 9d83a28882c11e35436459b91bb3ae26 469 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 273 469 30.781 T 11-11-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24 vm_RS08990 9d83a28882c11e35436459b91bb3ae26 469 Pfam PF00218 Indole-3-glycerol phosphate synthase 21 266 7.0E-97 T 11-11-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48 vm_RS08990 9d83a28882c11e35436459b91bb3ae26 469 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 65 83 - T 11-11-2016 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48 vm_RS00295 e226ab5110ea94aeeee793a0b0d7e61e 255 Pfam PF00899 ThiF family 10 242 1.9E-56 T 11-11-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 vm_RS00295 e226ab5110ea94aeeee793a0b0d7e61e 255 SUPERFAMILY SSF69572 2 245 2.49E-74 T 11-11-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 vm_RS00295 e226ab5110ea94aeeee793a0b0d7e61e 255 Gene3D G3DSA:3.40.50.720 3 245 1.1E-66 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS00540 f306bbc0a4563c7ae9f9ea5109b95165 398 SUPERFAMILY SSF48452 310 357 5.48E-15 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS00540 f306bbc0a4563c7ae9f9ea5109b95165 398 SUPERFAMILY SSF48452 85 222 5.48E-15 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS00540 f306bbc0a4563c7ae9f9ea5109b95165 398 Pfam PF07219 HemY protein N-terminus 26 132 6.1E-27 T 11-11-2016 IPR010817 HemY, N-terminal vm_RS00540 f306bbc0a4563c7ae9f9ea5109b95165 398 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 2 386 8.9E-129 T 11-11-2016 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 vm_RS00540 f306bbc0a4563c7ae9f9ea5109b95165 398 Gene3D G3DSA:1.25.40.10 313 389 7.4E-10 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS00540 f306bbc0a4563c7ae9f9ea5109b95165 398 Gene3D G3DSA:1.25.40.10 87 213 4.1E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS10775 b8870cf50310fb9b5b7766176dc955e5 63 Pfam PF14056 Domain of unknown function (DUF4250) 8 62 6.8E-21 T 11-11-2016 IPR025346 Protein of unknown function DUF4250 vm_RS01760 4f65637b4a7db35345f5e6afdb4e6082 825 Pfam PF00912 Transglycosylase 55 229 1.7E-62 T 11-11-2016 IPR001264 Glycosyl transferase, family 51 vm_RS01760 4f65637b4a7db35345f5e6afdb4e6082 825 SUPERFAMILY SSF53955 43 256 1.49E-77 T 11-11-2016 IPR023346 Lysozyme-like domain vm_RS01760 4f65637b4a7db35345f5e6afdb4e6082 825 Pfam PF00905 Penicillin binding protein transpeptidase domain 434 698 4.4E-29 T 11-11-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 vm_RS01760 4f65637b4a7db35345f5e6afdb4e6082 825 SUPERFAMILY SSF56601 428 811 2.11E-115 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS01760 4f65637b4a7db35345f5e6afdb4e6082 825 SUPERFAMILY SSF56601 211 233 2.11E-115 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS01760 4f65637b4a7db35345f5e6afdb4e6082 825 SUPERFAMILY SSF56601 262 314 2.11E-115 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS01760 4f65637b4a7db35345f5e6afdb4e6082 825 Pfam PF17092 Penicillin-binding protein OB-like domain 317 431 5.9E-31 T 11-11-2016 IPR031376 Penicillin-binding protein, OB-like domain vm_RS01760 4f65637b4a7db35345f5e6afdb4e6082 825 Gene3D G3DSA:3.40.710.10 428 812 1.1E-128 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS01760 4f65637b4a7db35345f5e6afdb4e6082 825 Gene3D G3DSA:3.40.710.10 232 314 1.1E-128 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS01760 4f65637b4a7db35345f5e6afdb4e6082 825 Gene3D G3DSA:1.10.3810.10 55 231 2.0E-73 T 11-11-2016 vm_RS01760 4f65637b4a7db35345f5e6afdb4e6082 825 Gene3D G3DSA:2.40.50.140 348 427 5.0E-19 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01760 4f65637b4a7db35345f5e6afdb4e6082 825 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 65 757 1.0E-168 T 11-11-2016 vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 Gene3D G3DSA:3.30.930.10 156 505 2.5E-120 T 11-11-2016 vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 391 407 8.1E-38 T 11-11-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 243 256 8.1E-38 T 11-11-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 214 230 8.1E-38 T 11-11-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 198 208 8.1E-38 T 11-11-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 PRINTS PR00982 Lysyl-tRNA synthetase signature 261 278 8.1E-38 T 11-11-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 Pfam PF00152 tRNA synthetases class II (D, K and N) 161 506 1.1E-80 T 11-11-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 Pfam PF01336 OB-fold nucleic acid binding domain 73 144 2.4E-7 T 11-11-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 SUPERFAMILY SSF55681 161 507 2.95E-118 T 11-11-2016 vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 24 509 43.14 T 11-11-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 19 509 4.7E-200 T 11-11-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 SUPERFAMILY SSF50249 16 154 2.94E-32 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS11855 e51702a5d993d5045ca4cb5b75d62a2b 510 Gene3D G3DSA:2.40.50.140 19 153 4.3E-34 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS03395 d03599f3f7d7e758d81a5b4f6e768a49 260 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 30 260 3.0E-99 T 11-11-2016 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 vm_RS03395 d03599f3f7d7e758d81a5b4f6e768a49 260 Gene3D G3DSA:2.40.230.20 23 260 1.2E-101 T 11-11-2016 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 vm_RS03395 d03599f3f7d7e758d81a5b4f6e768a49 260 SUPERFAMILY SSF111364 30 260 2.22E-85 T 11-11-2016 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 vm_RS02545 969b9011c8261e4c22a6f41916972605 573 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 168 2.0E-59 T 11-11-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 vm_RS02545 969b9011c8261e4c22a6f41916972605 573 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 432 451 - T 11-11-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 vm_RS02545 969b9011c8261e4c22a6f41916972605 573 Gene3D G3DSA:3.40.50.970 2 172 5.2E-76 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS02545 969b9011c8261e4c22a6f41916972605 573 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 395 544 8.7E-49 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 vm_RS02545 969b9011c8261e4c22a6f41916972605 573 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 568 7.2E-269 T 11-11-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 vm_RS02545 969b9011c8261e4c22a6f41916972605 573 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 330 5.1E-46 T 11-11-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 vm_RS02545 969b9011c8261e4c22a6f41916972605 573 SUPERFAMILY SSF52518 1 179 1.26E-65 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS02545 969b9011c8261e4c22a6f41916972605 573 Gene3D G3DSA:3.40.50.970 358 557 1.1E-73 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS02545 969b9011c8261e4c22a6f41916972605 573 Gene3D G3DSA:3.40.50.1220 191 357 9.6E-66 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS02545 969b9011c8261e4c22a6f41916972605 573 SUPERFAMILY SSF52518 372 566 1.97E-66 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS02545 969b9011c8261e4c22a6f41916972605 573 SUPERFAMILY SSF52467 190 363 7.09E-62 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS04020 fe433f3a3f4b4713ebda4a759d942b9c 196 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 112 122 - T 11-11-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 vm_RS04020 fe433f3a3f4b4713ebda4a759d942b9c 196 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 5 191 5.8E-69 T 11-11-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 vm_RS04020 fe433f3a3f4b4713ebda4a759d942b9c 196 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 5 184 35.887 T 11-11-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 vm_RS04020 fe433f3a3f4b4713ebda4a759d942b9c 196 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 18 31 - T 11-11-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 vm_RS04020 fe433f3a3f4b4713ebda4a759d942b9c 196 SUPERFAMILY SSF53178 5 194 8.37E-69 T 11-11-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 vm_RS04020 fe433f3a3f4b4713ebda4a759d942b9c 196 Gene3D G3DSA:3.40.50.1470 3 193 1.0E-70 T 11-11-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 vm_RS04020 fe433f3a3f4b4713ebda4a759d942b9c 196 Pfam PF01195 Peptidyl-tRNA hydrolase 7 189 6.9E-53 T 11-11-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 vm_RS00565 35cf2a51476ab12109958865672a6a17 843 Pfam PF01295 Adenylate cyclase, class-I 226 829 2.9E-253 T 11-11-2016 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 vm_RS00565 35cf2a51476ab12109958865672a6a17 843 Pfam PF12633 Adenylate cyclase NT domain 5 198 2.3E-76 T 11-11-2016 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 vm_RS00565 35cf2a51476ab12109958865672a6a17 843 PIRSF PIRSF001444 1 843 0.0 T 11-11-2016 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 vm_RS08120 963dfe7d7b3a90fd9934975bb9a5d623 158 SUPERFAMILY SSF55729 4 148 2.13E-27 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS08120 963dfe7d7b3a90fd9934975bb9a5d623 158 Pfam PF00583 Acetyltransferase (GNAT) family 63 146 2.1E-14 T 11-11-2016 IPR000182 GNAT domain GO:0008080 vm_RS08120 963dfe7d7b3a90fd9934975bb9a5d623 158 Gene3D G3DSA:3.40.630.30 9 147 3.9E-30 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS14895 15392ff8133d3ce62ed541f0d9e67268 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.8E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS14895 15392ff8133d3ce62ed541f0d9e67268 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.8E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS14895 15392ff8133d3ce62ed541f0d9e67268 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.8E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS14895 15392ff8133d3ce62ed541f0d9e67268 303 Pfam PF03466 LysR substrate binding domain 102 293 2.2E-17 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS14895 15392ff8133d3ce62ed541f0d9e67268 303 SUPERFAMILY SSF53850 87 293 1.74E-36 T 11-11-2016 vm_RS14895 15392ff8133d3ce62ed541f0d9e67268 303 Gene3D G3DSA:3.40.190.10 270 298 2.8E-22 T 11-11-2016 vm_RS14895 15392ff8133d3ce62ed541f0d9e67268 303 Gene3D G3DSA:3.40.190.10 87 169 2.8E-22 T 11-11-2016 vm_RS14895 15392ff8133d3ce62ed541f0d9e67268 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 6.1E-17 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS14895 15392ff8133d3ce62ed541f0d9e67268 303 Gene3D G3DSA:1.10.10.10 2 82 1.2E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS14895 15392ff8133d3ce62ed541f0d9e67268 303 SUPERFAMILY SSF46785 2 80 2.18E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS14895 15392ff8133d3ce62ed541f0d9e67268 303 Gene3D G3DSA:3.40.190.10 170 265 1.2E-25 T 11-11-2016 vm_RS03505 f49d415d37a3cf02a4e4e9451a375677 301 Gene3D G3DSA:3.40.50.20 5 102 5.8E-19 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS03505 f49d415d37a3cf02a4e4e9451a375677 301 Gene3D G3DSA:3.30.1490.20 103 172 5.8E-7 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS03505 f49d415d37a3cf02a4e4e9451a375677 301 Pfam PF08443 RimK-like ATP-grasp domain 98 286 3.4E-68 T 11-11-2016 IPR013651 ATP-grasp fold, RimK-type vm_RS03505 f49d415d37a3cf02a4e4e9451a375677 301 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 286 2.9E-87 T 11-11-2016 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 vm_RS03505 f49d415d37a3cf02a4e4e9451a375677 301 Gene3D G3DSA:3.30.470.20 173 276 3.7E-36 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS03505 f49d415d37a3cf02a4e4e9451a375677 301 SUPERFAMILY SSF56059 98 288 1.12E-49 T 11-11-2016 vm_RS03505 f49d415d37a3cf02a4e4e9451a375677 301 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 53.935 T 11-11-2016 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK vm_RS11350 7938798478d0bbc8ebf782d75f62ce77 77 ProDom PD060428 YFGJ CYTOPLASMIC VP0614 ECS3372 VC0765 YPO2873 Y1359 STY2763A VV0773 5 68 4.0E-27 T 11-11-2016 IPR010807 Protein of unknown function DUF1407 vm_RS11350 7938798478d0bbc8ebf782d75f62ce77 77 SUPERFAMILY SSF161187 1 69 3.53E-26 T 11-11-2016 IPR029037 YfgJ-like vm_RS11350 7938798478d0bbc8ebf782d75f62ce77 77 Pfam PF07191 zinc-ribbons 4 67 7.8E-26 T 11-11-2016 IPR010807 Protein of unknown function DUF1407 vm_RS11350 7938798478d0bbc8ebf782d75f62ce77 77 Gene3D G3DSA:2.10.290.10 1 70 1.5E-28 T 11-11-2016 IPR029037 YfgJ-like vm_RS02540 c4545f38131cb98067b684e428d5da25 601 Gene3D G3DSA:3.40.50.980 333 387 1.0E-30 T 11-11-2016 vm_RS02540 c4545f38131cb98067b684e428d5da25 601 Gene3D G3DSA:3.40.50.980 189 280 1.0E-30 T 11-11-2016 vm_RS02540 c4545f38131cb98067b684e428d5da25 601 SUPERFAMILY SSF56801 7 285 4.71E-116 T 11-11-2016 vm_RS02540 c4545f38131cb98067b684e428d5da25 601 SUPERFAMILY SSF56801 336 597 4.71E-116 T 11-11-2016 vm_RS02540 c4545f38131cb98067b684e428d5da25 601 ProSitePatterns PS00455 Putative AMP-binding domain signature. 183 194 - T 11-11-2016 IPR020845 AMP-binding, conserved site vm_RS02540 c4545f38131cb98067b684e428d5da25 601 Gene3D G3DSA:3.40.50.980 8 188 6.1E-33 T 11-11-2016 vm_RS02540 c4545f38131cb98067b684e428d5da25 601 Pfam PF00501 AMP-binding enzyme 14 466 2.6E-99 T 11-11-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 vm_RS02540 c4545f38131cb98067b684e428d5da25 601 Gene3D G3DSA:2.30.38.10 401 460 6.5E-19 T 11-11-2016 vm_RS01795 67b6593683965573b1c18a179fffed57 361 Gene3D G3DSA:3.40.50.1970 2 171 3.0E-67 T 11-11-2016 vm_RS01795 67b6593683965573b1c18a179fffed57 361 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 353 2.2E-122 T 11-11-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 vm_RS01795 67b6593683965573b1c18a179fffed57 361 SUPERFAMILY SSF56796 4 356 9.94E-120 T 11-11-2016 vm_RS01795 67b6593683965573b1c18a179fffed57 361 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 2 357 43.403 T 11-11-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 vm_RS01795 67b6593683965573b1c18a179fffed57 361 PIRSF PIRSF001455 17 360 1.3E-108 T 11-11-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 vm_RS01795 67b6593683965573b1c18a179fffed57 361 Pfam PF01761 3-dehydroquinate synthase 67 324 8.9E-114 T 11-11-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164 vm_RS01795 67b6593683965573b1c18a179fffed57 361 Gene3D G3DSA:1.20.1090.10 172 355 7.8E-69 T 11-11-2016 vm_RS06360 fc9e5f9163359eba6013c05590c819f7 260 Pfam PF08241 Methyltransferase domain 52 148 2.7E-12 T 11-11-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 vm_RS06360 fc9e5f9163359eba6013c05590c819f7 260 Gene3D G3DSA:3.40.50.150 33 259 4.4E-26 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS06360 fc9e5f9163359eba6013c05590c819f7 260 SUPERFAMILY SSF53335 5 259 1.86E-31 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS06360 fc9e5f9163359eba6013c05590c819f7 260 Hamap MF_02057 tRNA 5-carboxymethoxyuridine methyltransferase [cmoM]. 3 259 41.644 T 11-11-2016 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase GO:0008168 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 SUPERFAMILY SSF52418 73 333 3.53E-89 T 11-11-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 Gene3D G3DSA:3.90.1170.30 339 431 1.1E-32 T 11-11-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 Gene3D G3DSA:1.20.970.10 2 67 4.3E-29 T 11-11-2016 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 351 423 4.7E-23 T 11-11-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 TIGRFAM TIGR02643 T_phosphoryl: thymidine phosphorylase 3 426 3.3E-214 T 11-11-2016 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 5 423 3.6E-161 T 11-11-2016 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 PIRSF PIRSF000478 1 437 7.0E-152 T 11-11-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 113 128 - T 11-11-2016 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 Gene3D G3DSA:3.40.1030.10 75 338 1.3E-110 T 11-11-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 SMART SM00941 350 424 6.3E-26 T 11-11-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 SUPERFAMILY SSF54680 337 435 2.49E-28 T 11-11-2016 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 Pfam PF00591 Glycosyl transferase family, a/b domain 80 309 2.8E-49 T 11-11-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 Pfam PF02885 Glycosyl transferase family, helical bundle domain 6 67 9.6E-21 T 11-11-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 SUPERFAMILY SSF47648 2 70 1.83E-21 T 11-11-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 vm_RS03200 3f31099cb7b75cbb16fdbdca114e249f 442 Hamap MF_01628 Thymidine phosphorylase [deoA]. 1 438 51.057 T 11-11-2016 IPR013465 Thymidine phosphorylase GO:0006213|GO:0009032 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181 vm_RS05750 870eb8d8c58daff98319ff8b8082481d 256 SUPERFAMILY SSF52540 7 251 4.44E-76 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05750 870eb8d8c58daff98319ff8b8082481d 256 PIRSF PIRSF039085 3 256 1.6E-120 T 11-11-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 vm_RS05750 870eb8d8c58daff98319ff8b8082481d 256 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS05750 870eb8d8c58daff98319ff8b8082481d 256 Gene3D G3DSA:3.40.50.300 6 253 7.7E-83 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05750 870eb8d8c58daff98319ff8b8082481d 256 SMART SM00382 31 229 2.0E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS05750 870eb8d8c58daff98319ff8b8082481d 256 Pfam PF00005 ABC transporter 22 181 3.2E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS08105 1b34eee6f09b2795171d0d1dc5d6519a 357 SUPERFAMILY SSF54593 5 341 3.89E-79 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase vm_RS08105 1b34eee6f09b2795171d0d1dc5d6519a 357 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 163 275 5.5E-15 T 11-11-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain vm_RS08105 1b34eee6f09b2795171d0d1dc5d6519a 357 PIRSF PIRSF009283 1 355 1.7E-127 T 11-11-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 vm_RS08105 1b34eee6f09b2795171d0d1dc5d6519a 357 Gene3D G3DSA:3.10.180.10 5 147 1.4E-45 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase vm_RS08105 1b34eee6f09b2795171d0d1dc5d6519a 357 Gene3D G3DSA:3.10.180.10 159 354 5.0E-74 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase vm_RS08105 1b34eee6f09b2795171d0d1dc5d6519a 357 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 6 143 1.6E-58 T 11-11-2016 vm_RS08105 1b34eee6f09b2795171d0d1dc5d6519a 357 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 12 354 1.9E-136 T 11-11-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 vm_RS00380 41924975edf7cf04e0aae5a1d9139464 395 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 3.4E-9 T 11-11-2016 vm_RS00380 41924975edf7cf04e0aae5a1d9139464 395 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 156 165 3.4E-9 T 11-11-2016 vm_RS00380 41924975edf7cf04e0aae5a1d9139464 395 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 363 370 3.4E-9 T 11-11-2016 vm_RS00380 41924975edf7cf04e0aae5a1d9139464 395 Pfam PF03486 HI0933-like protein 6 393 3.5E-157 T 11-11-2016 vm_RS00380 41924975edf7cf04e0aae5a1d9139464 395 SUPERFAMILY SSF51905 1 189 7.46E-58 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS00380 41924975edf7cf04e0aae5a1d9139464 395 SUPERFAMILY SSF51905 338 395 7.46E-58 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS00380 41924975edf7cf04e0aae5a1d9139464 395 SUPERFAMILY SSF160996 191 339 1.96E-42 T 11-11-2016 vm_RS00380 41924975edf7cf04e0aae5a1d9139464 395 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 7 393 1.1E-130 T 11-11-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like vm_RS00380 41924975edf7cf04e0aae5a1d9139464 395 Gene3D G3DSA:1.10.8.260 271 322 9.4E-25 T 11-11-2016 IPR023166 HI0933 insert-like domain vm_RS00380 41924975edf7cf04e0aae5a1d9139464 395 Gene3D G3DSA:2.40.30.10 190 270 1.9E-28 T 11-11-2016 vm_RS00380 41924975edf7cf04e0aae5a1d9139464 395 Gene3D G3DSA:3.50.50.60 2 187 3.0E-52 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS00380 41924975edf7cf04e0aae5a1d9139464 395 Gene3D G3DSA:3.50.50.60 340 393 3.0E-52 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS10695 b50451f274edde91c0ad2cb66b2a3814 294 SUPERFAMILY SSF48576 3 288 1.6E-85 T 11-11-2016 IPR008949 Isoprenoid synthase domain vm_RS10695 b50451f274edde91c0ad2cb66b2a3814 294 Pfam PF00348 Polyprenyl synthetase 31 268 5.9E-56 T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 vm_RS10695 b50451f274edde91c0ad2cb66b2a3814 294 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 213 225 - T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 vm_RS10695 b50451f274edde91c0ad2cb66b2a3814 294 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 79 95 - T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 vm_RS10695 b50451f274edde91c0ad2cb66b2a3814 294 Gene3D G3DSA:1.10.600.10 3 293 2.8E-90 T 11-11-2016 IPR008949 Isoprenoid synthase domain vm_RS02445 86cd2ac628f73ec5022ad062261494dd 356 Pfam PF03739 Predicted permease YjgP/YjgQ family 7 352 5.7E-66 T 11-11-2016 IPR005495 Permease LptG/LptF-related GO:0016021 vm_RS02445 86cd2ac628f73ec5022ad062261494dd 356 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 354 7.1E-130 T 11-11-2016 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 SUPERFAMILY SSF54211 5 145 1.27E-48 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 SUPERFAMILY SSF55666 146 236 8.27E-29 T 11-11-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 SUPERFAMILY SSF55666 451 550 2.24E-27 T 11-11-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 321 2.3E-25 T 11-11-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 PIRSF PIRSF005499 2 708 9.5E-299 T 11-11-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 SUPERFAMILY SSF54211 293 489 2.53E-47 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 Pfam PF00575 S1 RNA binding domain 620 691 1.5E-18 T 11-11-2016 IPR003029 S1 domain GO:0003676 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 Pfam PF03725 3' exoribonuclease family, domain 2 148 211 1.7E-14 T 11-11-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 Gene3D G3DSA:3.30.230.70 3 226 5.4E-81 T 11-11-2016 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 Gene3D G3DSA:3.30.230.70 315 543 9.3E-89 T 11-11-2016 IPR027408 PNPase/RNase PH domain Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 SUPERFAMILY SSF54791 555 623 1.52E-16 T 11-11-2016 IPR004088 K Homology domain, type 1 GO:0003723 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 Gene3D G3DSA:1.10.10.400 227 314 8.6E-27 T 11-11-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 SMART SM00322 553 618 1.2E-11 T 11-11-2016 IPR004087 K Homology domain GO:0003676 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 1.7E-20 T 11-11-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 Pfam PF01138 3' exoribonuclease family, domain 1 17 145 2.0E-16 T 11-11-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 Gene3D G3DSA:2.40.50.140 620 693 1.3E-26 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 SUPERFAMILY SSF50249 608 694 2.91E-21 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 11 692 0.0 T 11-11-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 SMART SM00316 621 691 1.8E-25 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 Gene3D G3DSA:3.30.1370.10 553 619 5.1E-25 T 11-11-2016 IPR004088 K Homology domain, type 1 GO:0003723 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 Pfam PF00013 KH domain 558 615 2.9E-9 T 11-11-2016 IPR004088 K Homology domain, type 1 GO:0003723 vm_RS11945 bc1dc94c9e7a02d13b4e98a6feab6afb 709 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 4 694 30.277 T 11-11-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 vm_RS06980 45584360c4a19cbaf0627138741dd02e 477 Gene3D G3DSA:1.20.1250.20 272 460 1.3E-15 T 11-11-2016 vm_RS06980 45584360c4a19cbaf0627138741dd02e 477 Pfam PF07690 Major Facilitator Superfamily 18 408 3.5E-53 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 vm_RS06980 45584360c4a19cbaf0627138741dd02e 477 Gene3D G3DSA:1.20.1250.20 14 180 4.2E-29 T 11-11-2016 vm_RS06980 45584360c4a19cbaf0627138741dd02e 477 ProSitePatterns PS00217 Sugar transport proteins signature 2. 108 133 - T 11-11-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 vm_RS06980 45584360c4a19cbaf0627138741dd02e 477 SUPERFAMILY SSF103473 4 191 3.92E-60 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS06980 45584360c4a19cbaf0627138741dd02e 477 SUPERFAMILY SSF103473 248 466 3.92E-60 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS07660 f447974dfcb81ac3eac1536cbcd213d4 398 Pfam PF08495 FIST N domain 41 236 7.7E-32 T 11-11-2016 IPR013702 FIST domain, N-terminal vm_RS07660 f447974dfcb81ac3eac1536cbcd213d4 398 Pfam PF10442 FIST C domain 239 366 9.1E-14 T 11-11-2016 IPR019494 FIST, C-domain vm_RS07660 f447974dfcb81ac3eac1536cbcd213d4 398 SMART SM01204 239 369 3.9E-25 T 11-11-2016 IPR019494 FIST, C-domain vm_RS07660 f447974dfcb81ac3eac1536cbcd213d4 398 SMART SM00897 38 238 3.2E-50 T 11-11-2016 IPR013702 FIST domain, N-terminal vm_RS02900 47a4ad4a214026905163704cc1e4a9b5 338 Pfam PF02833 DHHA2 domain 210 334 5.9E-22 T 11-11-2016 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1 vm_RS02900 47a4ad4a214026905163704cc1e4a9b5 338 SUPERFAMILY SSF64182 33 335 1.44E-57 T 11-11-2016 vm_RS02900 47a4ad4a214026905163704cc1e4a9b5 338 SMART SM01131 208 335 3.3E-42 T 11-11-2016 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1 vm_RS02900 47a4ad4a214026905163704cc1e4a9b5 338 Gene3D G3DSA:3.90.1640.10 33 212 4.7E-38 T 11-11-2016 vm_RS02900 47a4ad4a214026905163704cc1e4a9b5 338 Pfam PF01368 DHH family 37 167 9.8E-11 T 11-11-2016 IPR001667 DDH domain vm_RS12100 ecf6f03ac7d15d2365f380d597183b5d 328 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 325 5.0E-39 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12100 ecf6f03ac7d15d2365f380d597183b5d 328 Gene3D G3DSA:1.10.3720.10 94 320 2.4E-16 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12100 ecf6f03ac7d15d2365f380d597183b5d 328 SUPERFAMILY SSF161098 93 324 2.83E-13 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS11775 b32181f095324920cd55f60ff82015fa 520 Pfam PF03023 MviN-like protein 30 480 1.2E-145 T 11-11-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ vm_RS11775 b32181f095324920cd55f60ff82015fa 520 PIRSF PIRSF002869 1 518 1.1E-150 T 11-11-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ vm_RS11775 b32181f095324920cd55f60ff82015fa 520 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 5 511 4.3E-137 T 11-11-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ vm_RS11775 b32181f095324920cd55f60ff82015fa 520 PRINTS PR01806 Virulence factor MviN signature 366 385 5.9E-78 T 11-11-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ vm_RS11775 b32181f095324920cd55f60ff82015fa 520 PRINTS PR01806 Virulence factor MviN signature 54 70 5.9E-78 T 11-11-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ vm_RS11775 b32181f095324920cd55f60ff82015fa 520 PRINTS PR01806 Virulence factor MviN signature 35 54 5.9E-78 T 11-11-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ vm_RS11775 b32181f095324920cd55f60ff82015fa 520 PRINTS PR01806 Virulence factor MviN signature 142 166 5.9E-78 T 11-11-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ vm_RS11775 b32181f095324920cd55f60ff82015fa 520 PRINTS PR01806 Virulence factor MviN signature 268 294 5.9E-78 T 11-11-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ vm_RS11775 b32181f095324920cd55f60ff82015fa 520 PRINTS PR01806 Virulence factor MviN signature 418 435 5.9E-78 T 11-11-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ vm_RS11775 b32181f095324920cd55f60ff82015fa 520 PRINTS PR01806 Virulence factor MviN signature 166 187 5.9E-78 T 11-11-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ vm_RS04655 0258990d45555df7846f8beaafcac1b4 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 29 50 9.1E-70 T 11-11-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04655 0258990d45555df7846f8beaafcac1b4 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 55 72 9.1E-70 T 11-11-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04655 0258990d45555df7846f8beaafcac1b4 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 158 177 9.1E-70 T 11-11-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04655 0258990d45555df7846f8beaafcac1b4 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 195 218 9.1E-70 T 11-11-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04655 0258990d45555df7846f8beaafcac1b4 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 103 121 9.1E-70 T 11-11-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04655 0258990d45555df7846f8beaafcac1b4 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 78 101 9.1E-70 T 11-11-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04655 0258990d45555df7846f8beaafcac1b4 222 Pfam PF03379 CcmB protein 6 219 4.0E-89 T 11-11-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04655 0258990d45555df7846f8beaafcac1b4 222 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 9 218 6.4E-92 T 11-11-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria vm_RS04655 0258990d45555df7846f8beaafcac1b4 222 PIRSF PIRSF002764 1 222 3.8E-83 T 11-11-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria vm_RS12750 5d041c92449cc298e06b4dfc1ac613d4 238 Gene3D G3DSA:3.40.190.10 36 150 3.3E-6 T 11-11-2016 vm_RS12750 5d041c92449cc298e06b4dfc1ac613d4 238 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 215 2.6E-8 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS12750 5d041c92449cc298e06b4dfc1ac613d4 238 SUPERFAMILY SSF53850 30 236 4.24E-22 T 11-11-2016 vm_RS02210 a89a3cb4f2ce3f706c2b387c8fb81383 176 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 36.05 T 11-11-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 vm_RS02210 a89a3cb4f2ce3f706c2b387c8fb81383 176 SUPERFAMILY SSF50324 3 174 1.96E-65 T 11-11-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 vm_RS02210 a89a3cb4f2ce3f706c2b387c8fb81383 176 Pfam PF00719 Inorganic pyrophosphatase 18 173 1.8E-51 T 11-11-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 vm_RS02210 a89a3cb4f2ce3f706c2b387c8fb81383 176 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 11-11-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 vm_RS02210 a89a3cb4f2ce3f706c2b387c8fb81383 176 Gene3D G3DSA:3.90.80.10 4 175 8.1E-59 T 11-11-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1 vm_RS06105 395ec539b801271c25b85d27634280d9 247 SUPERFAMILY SSF46689 143 192 2.96E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS06105 395ec539b801271c25b85d27634280d9 247 Pfam PF12833 Helix-turn-helix domain 169 243 5.6E-21 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS06105 395ec539b801271c25b85d27634280d9 247 SMART SM00342 159 243 1.6E-26 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS06105 395ec539b801271c25b85d27634280d9 247 Gene3D G3DSA:1.10.10.60 196 245 2.0E-16 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS06105 395ec539b801271c25b85d27634280d9 247 Gene3D G3DSA:1.10.10.60 142 195 3.8E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS06105 395ec539b801271c25b85d27634280d9 247 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 196 239 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 vm_RS06105 395ec539b801271c25b85d27634280d9 247 SUPERFAMILY SSF46689 196 243 1.16E-12 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS06105 395ec539b801271c25b85d27634280d9 247 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 212 227 3.6E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS06105 395ec539b801271c25b85d27634280d9 247 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 227 243 3.6E-7 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS07170 a1de2e5af50eeb30202d78822220f5af 236 Gene3D G3DSA:3.20.20.190 4 234 6.8E-67 T 11-11-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 vm_RS07170 a1de2e5af50eeb30202d78822220f5af 236 SUPERFAMILY SSF51695 4 235 1.09E-67 T 11-11-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 vm_RS07170 a1de2e5af50eeb30202d78822220f5af 236 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 8 232 1.1E-37 T 11-11-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 vm_RS10800 69445ff8ef4b5e9176fc4f97a0ee3eb8 170 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 14 155 44.119 T 11-11-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 vm_RS10800 69445ff8ef4b5e9176fc4f97a0ee3eb8 170 SUPERFAMILY SSF53927 5 159 7.03E-57 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 vm_RS10800 69445ff8ef4b5e9176fc4f97a0ee3eb8 170 Pfam PF14437 MafB19-like deaminase 10 155 1.3E-31 T 11-11-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 vm_RS10800 69445ff8ef4b5e9176fc4f97a0ee3eb8 170 Gene3D G3DSA:3.40.140.10 7 153 1.5E-59 T 11-11-2016 vm_RS10800 69445ff8ef4b5e9176fc4f97a0ee3eb8 170 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 59 96 - T 11-11-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 vm_RS10355 fe612dbb8c5a16a717e39a4cd873d91f 204 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 9 166 26.052 T 11-11-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 vm_RS10355 fe612dbb8c5a16a717e39a4cd873d91f 204 Gene3D G3DSA:3.30.160.150 24 171 2.0E-57 T 11-11-2016 vm_RS10355 fe612dbb8c5a16a717e39a4cd873d91f 204 Pfam PF04390 Lipopolysaccharide-assembly 16 161 1.4E-18 T 11-11-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 vm_RS08305 836af56b97613c75a5e436b3e2d25a69 505 Gene3D G3DSA:3.20.130.10 302 490 3.8E-75 T 11-11-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 vm_RS08305 836af56b97613c75a5e436b3e2d25a69 505 SUPERFAMILY SSF117457 316 489 1.96E-64 T 11-11-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 vm_RS08305 836af56b97613c75a5e436b3e2d25a69 505 Pfam PF05683 Fumarase C-terminus 289 490 2.3E-84 T 11-11-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 vm_RS08305 836af56b97613c75a5e436b3e2d25a69 505 PIRSF PIRSF001394 1 505 3.8E-216 T 11-11-2016 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384 vm_RS08305 836af56b97613c75a5e436b3e2d25a69 505 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 12 284 1.1E-63 T 11-11-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 vm_RS08305 836af56b97613c75a5e436b3e2d25a69 505 Pfam PF05681 Fumarate hydratase (Fumerase) 11 285 2.1E-98 T 11-11-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 vm_RS08305 836af56b97613c75a5e436b3e2d25a69 505 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 325 488 3.4E-51 T 11-11-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 vm_RS05305 4bfd1585b9a22b14fb191ce641a88f5a 433 SUPERFAMILY SSF109998 248 430 5.62E-50 T 11-11-2016 IPR027304 Trigger factor/SurA domain vm_RS05305 4bfd1585b9a22b14fb191ce641a88f5a 433 TIGRFAM TIGR00115 tig: trigger factor 11 412 5.2E-143 T 11-11-2016 IPR005215 Trigger factor GO:0015031 vm_RS05305 4bfd1585b9a22b14fb191ce641a88f5a 433 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 156 235 5.3E-13 T 11-11-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 vm_RS05305 4bfd1585b9a22b14fb191ce641a88f5a 433 Pfam PF05697 Bacterial trigger factor protein (TF) 1 144 4.0E-44 T 11-11-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 vm_RS05305 4bfd1585b9a22b14fb191ce641a88f5a 433 SUPERFAMILY SSF102735 1 130 6.54E-42 T 11-11-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 vm_RS05305 4bfd1585b9a22b14fb191ce641a88f5a 433 Gene3D G3DSA:3.10.50.40 155 215 2.4E-9 T 11-11-2016 vm_RS05305 4bfd1585b9a22b14fb191ce641a88f5a 433 SUPERFAMILY SSF54534 90 241 4.71E-37 T 11-11-2016 vm_RS05305 4bfd1585b9a22b14fb191ce641a88f5a 433 Gene3D G3DSA:1.10.3120.10 216 388 1.6E-60 T 11-11-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 vm_RS05305 4bfd1585b9a22b14fb191ce641a88f5a 433 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 263 412 2.4E-39 T 11-11-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 vm_RS05305 4bfd1585b9a22b14fb191ce641a88f5a 433 Gene3D G3DSA:3.30.70.1050 1 118 3.9E-41 T 11-11-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 vm_RS05305 4bfd1585b9a22b14fb191ce641a88f5a 433 PIRSF PIRSF003095 1 432 2.0E-127 T 11-11-2016 IPR005215 Trigger factor GO:0015031 vm_RS05305 4bfd1585b9a22b14fb191ce641a88f5a 433 Hamap MF_00303 Trigger factor [tig]. 1 418 21.789 T 11-11-2016 IPR005215 Trigger factor GO:0015031 vm_RS15285 bcf84b5a07a9edbd6f54a6ccfbc86104 93 Gene3D G3DSA:3.90.1200.10 15 92 3.2E-20 T 11-11-2016 vm_RS15285 bcf84b5a07a9edbd6f54a6ccfbc86104 93 Pfam PF01636 Phosphotransferase enzyme family 9 86 2.0E-18 T 11-11-2016 IPR002575 Aminoglycoside phosphotransferase vm_RS15285 bcf84b5a07a9edbd6f54a6ccfbc86104 93 SUPERFAMILY SSF56112 5 92 8.16E-26 T 11-11-2016 IPR011009 Protein kinase-like domain vm_RS04540 d05eb0eb5817c53e0c2f118357b00aa2 1115 SUPERFAMILY SSF46689 1064 1111 2.02E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS04540 d05eb0eb5817c53e0c2f118357b00aa2 1115 Gene3D G3DSA:1.10.10.60 1065 1109 1.8E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS04540 d05eb0eb5817c53e0c2f118357b00aa2 1115 Pfam PF12833 Helix-turn-helix domain 1035 1110 1.2E-23 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS04540 d05eb0eb5817c53e0c2f118357b00aa2 1115 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 1094 1110 6.9E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS04540 d05eb0eb5817c53e0c2f118357b00aa2 1115 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 1079 1094 6.9E-5 T 11-11-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 vm_RS04540 d05eb0eb5817c53e0c2f118357b00aa2 1115 SUPERFAMILY SSF63829 348 446 6.28E-11 T 11-11-2016 vm_RS04540 d05eb0eb5817c53e0c2f118357b00aa2 1115 SUPERFAMILY SSF63829 204 308 6.28E-11 T 11-11-2016 vm_RS04540 d05eb0eb5817c53e0c2f118357b00aa2 1115 Gene3D G3DSA:1.10.10.60 1010 1064 1.9E-9 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS04540 d05eb0eb5817c53e0c2f118357b00aa2 1115 SMART SM00342 1028 1110 1.1E-27 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS04540 d05eb0eb5817c53e0c2f118357b00aa2 1115 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 1065 1106 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 vm_RS04540 d05eb0eb5817c53e0c2f118357b00aa2 1115 SUPERFAMILY SSF55874 852 972 2.47E-5 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS04540 d05eb0eb5817c53e0c2f118357b00aa2 1115 Gene3D G3DSA:2.120.10.30 253 447 3.1E-8 T 11-11-2016 IPR011042 Six-bladed beta-propeller, TolB-like vm_RS08150 38ae37bb2508e867c15e62cbd91f3bce 234 SUPERFAMILY SSF48008 87 223 2.14E-24 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal vm_RS08150 38ae37bb2508e867c15e62cbd91f3bce 234 Gene3D G3DSA:1.20.120.530 83 226 3.0E-31 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal vm_RS08150 38ae37bb2508e867c15e62cbd91f3bce 234 SMART SM00345 22 80 7.1E-14 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS08150 38ae37bb2508e867c15e62cbd91f3bce 234 Pfam PF07729 FCD domain 90 216 5.1E-26 T 11-11-2016 IPR011711 GntR, C-terminal vm_RS08150 38ae37bb2508e867c15e62cbd91f3bce 234 SMART SM00895 90 217 1.5E-22 T 11-11-2016 IPR011711 GntR, C-terminal vm_RS08150 38ae37bb2508e867c15e62cbd91f3bce 234 Gene3D G3DSA:1.10.10.10 7 81 2.5E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS08150 38ae37bb2508e867c15e62cbd91f3bce 234 SUPERFAMILY SSF46785 15 107 1.9E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS08150 38ae37bb2508e867c15e62cbd91f3bce 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 80 3.9E-15 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS05140 6682036fd4e040ee43785182b5fc2a16 196 SUPERFAMILY SSF46689 7 79 1.99E-6 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS05140 6682036fd4e040ee43785182b5fc2a16 196 Pfam PF13305 WHG domain 91 172 2.3E-11 T 11-11-2016 IPR025996 WHG domain vm_RS05140 6682036fd4e040ee43785182b5fc2a16 196 SUPERFAMILY SSF48498 84 195 7.23E-19 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal vm_RS05140 6682036fd4e040ee43785182b5fc2a16 196 Gene3D G3DSA:1.10.357.10 2 196 1.1E-29 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 vm_RS05495 95d7032f12ba2d0ec57f65742bb9bbe2 609 Gene3D G3DSA:3.40.190.10 161 331 1.2E-14 T 11-11-2016 vm_RS05495 95d7032f12ba2d0ec57f65742bb9bbe2 609 Gene3D G3DSA:3.10.105.10 332 538 3.3E-39 T 11-11-2016 vm_RS05495 95d7032f12ba2d0ec57f65742bb9bbe2 609 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 90 484 7.5E-56 T 11-11-2016 IPR000914 Solute-binding protein family 5 domain vm_RS05495 95d7032f12ba2d0ec57f65742bb9bbe2 609 PIRSF PIRSF002741 1 564 9.9E-65 T 11-11-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 vm_RS05495 95d7032f12ba2d0ec57f65742bb9bbe2 609 Gene3D G3DSA:3.90.76.10 81 160 3.9E-18 T 11-11-2016 vm_RS05495 95d7032f12ba2d0ec57f65742bb9bbe2 609 SUPERFAMILY SSF53850 41 559 6.7E-93 T 11-11-2016 vm_RS10835 8b7542cd7f1a73259effa8f55a2b7844 147 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 16 38 9.0E-7 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS10835 8b7542cd7f1a73259effa8f55a2b7844 147 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 16 39 1.8E-9 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS10835 8b7542cd7f1a73259effa8f55a2b7844 147 Gene3D G3DSA:3.30.700.10 20 122 5.0E-16 T 11-11-2016 vm_RS10835 8b7542cd7f1a73259effa8f55a2b7844 147 SUPERFAMILY SSF54523 19 131 2.15E-20 T 11-11-2016 vm_RS10835 8b7542cd7f1a73259effa8f55a2b7844 147 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 17 37 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS10835 8b7542cd7f1a73259effa8f55a2b7844 147 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 40 126 3.5E-14 T 11-11-2016 IPR031982 Type IV minor pilin ComP vm_RS12230 15d090c36df20fbd87a0f625c5b78c1f 256 Pfam PF01061 ABC-2 type transporter 8 218 3.4E-40 T 11-11-2016 IPR013525 ABC-2 type transporter GO:0016020 Reactome: R-HSA-1369062 vm_RS12230 15d090c36df20fbd87a0f625c5b78c1f 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 58 80 1.0E-6 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 vm_RS12230 15d090c36df20fbd87a0f625c5b78c1f 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 196 215 1.0E-6 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 vm_RS12230 15d090c36df20fbd87a0f625c5b78c1f 256 PRINTS PR00164 ABC-2 type transport system membrane protein signature 176 195 1.0E-6 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 vm_RS12230 15d090c36df20fbd87a0f625c5b78c1f 256 PIRSF PIRSF006648 8 252 1.9E-26 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 vm_RS05490 1e9691c948fc4ec0afead1353fc7c266 347 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 161 341 8.5E-29 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS05490 1e9691c948fc4ec0afead1353fc7c266 347 SUPERFAMILY SSF161098 139 325 4.45E-20 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS05490 1e9691c948fc4ec0afead1353fc7c266 347 Gene3D G3DSA:1.10.3720.10 134 340 9.7E-19 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12740 f65b0148d53ee74c2e28f3693aa93f59 154 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 3 144 2.3E-33 T 11-11-2016 IPR017734 Type VI secretion system, lipoprotein SciN vm_RS12740 f65b0148d53ee74c2e28f3693aa93f59 154 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 12 143 3.3E-34 T 11-11-2016 IPR017734 Type VI secretion system, lipoprotein SciN vm_RS11290 9915563f0453004c85b7d813808877f1 106 Pfam PF08883 Dopa 4,5-dioxygenase family 2 102 1.0E-25 T 11-11-2016 IPR014980 Dopa 4,5-dioxygenase vm_RS11290 9915563f0453004c85b7d813808877f1 106 PIRSF PIRSF028139 1 106 2.3E-39 T 11-11-2016 IPR014980 Dopa 4,5-dioxygenase vm_RS11290 9915563f0453004c85b7d813808877f1 106 SUPERFAMILY SSF143410 1 105 2.62E-33 T 11-11-2016 IPR023389 DOPA-like domain vm_RS11290 9915563f0453004c85b7d813808877f1 106 Gene3D G3DSA:3.30.70.1240 1 106 1.5E-31 T 11-11-2016 IPR023389 DOPA-like domain vm_RS20480 3c6ec0808005cce80cada2266d7f2c16 462 Pfam PF13307 Helicase C-terminal domain 315 461 2.9E-35 T 11-11-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 vm_RS20480 3c6ec0808005cce80cada2266d7f2c16 462 Gene3D G3DSA:3.40.50.300 292 455 2.8E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS20480 3c6ec0808005cce80cada2266d7f2c16 462 SMART SM00491 324 460 1.1E-29 T 11-11-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 vm_RS20480 3c6ec0808005cce80cada2266d7f2c16 462 SUPERFAMILY SSF52540 299 399 4.26E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS20480 3c6ec0808005cce80cada2266d7f2c16 462 SUPERFAMILY SSF52540 2 54 4.26E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS20480 3c6ec0808005cce80cada2266d7f2c16 462 SUPERFAMILY SSF52540 430 454 4.26E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 Gene3D G3DSA:3.30.390.30 337 462 2.8E-44 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 SUPERFAMILY SSF55424 343 466 6.36E-39 T 11-11-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 SUPERFAMILY SSF51905 1 322 3.89E-59 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 Gene3D G3DSA:3.50.50.60 152 271 1.5E-34 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 Gene3D G3DSA:3.50.50.60 7 149 2.6E-66 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 Gene3D G3DSA:3.50.50.60 272 336 2.6E-66 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PIRSF PIRSF000350 1 469 5.5E-83 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 2.6E-41 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 2.6E-41 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 2.6E-41 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 2.6E-41 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 280 2.6E-41 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 42 52 - T 11-11-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 8 460 8.5E-151 T 11-11-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 3.2E-35 T 11-11-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 328 6.9E-66 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 3.2E-68 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 3.2E-68 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 3.2E-68 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 3.2E-68 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 3.2E-68 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 3.2E-68 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 3.2E-68 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 41 56 3.2E-68 T 11-11-2016 vm_RS02925 7b47a9c75e9481af3b101d71c84ffe29 475 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 265 279 3.2E-68 T 11-11-2016 vm_RS14110 614816fbd4420c03f53a5993dc78116f 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 11-11-2016 IPR017937 Thioredoxin, conserved site GO:0045454 vm_RS14110 614816fbd4420c03f53a5993dc78116f 108 SUPERFAMILY SSF52833 3 107 3.93E-38 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS14110 614816fbd4420c03f53a5993dc78116f 108 PRINTS PR00421 Thioredoxin family signature 24 32 3.3E-10 T 11-11-2016 vm_RS14110 614816fbd4420c03f53a5993dc78116f 108 PRINTS PR00421 Thioredoxin family signature 72 83 3.3E-10 T 11-11-2016 vm_RS14110 614816fbd4420c03f53a5993dc78116f 108 PRINTS PR00421 Thioredoxin family signature 32 41 3.3E-10 T 11-11-2016 vm_RS14110 614816fbd4420c03f53a5993dc78116f 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 2.4E-37 T 11-11-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 vm_RS14110 614816fbd4420c03f53a5993dc78116f 108 Gene3D G3DSA:3.40.30.10 2 107 1.2E-39 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS14110 614816fbd4420c03f53a5993dc78116f 108 Pfam PF00085 Thioredoxin 5 106 1.3E-32 T 11-11-2016 IPR013766 Thioredoxin domain GO:0045454 vm_RS14110 614816fbd4420c03f53a5993dc78116f 108 PIRSF PIRSF000077 2 108 1.3E-42 T 11-11-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 vm_RS07380 8e80687a10949a0b52216ccfc06d5584 355 Gene3D G3DSA:1.20.950.20 120 335 1.1E-63 T 11-11-2016 vm_RS07380 8e80687a10949a0b52216ccfc06d5584 355 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 123 328 2.3E-87 T 11-11-2016 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 vm_RS07380 8e80687a10949a0b52216ccfc06d5584 355 SUPERFAMILY SSF81342 120 334 1.41E-45 T 11-11-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 vm_RS07380 8e80687a10949a0b52216ccfc06d5584 355 Pfam PF01292 Prokaryotic cytochrome b561 126 307 6.6E-27 T 11-11-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 vm_RS04550 bf87bed85856a959942913dea3ffd45e 758 Pfam PF07670 Nucleoside recognition 349 440 1.6E-13 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 vm_RS04550 bf87bed85856a959942913dea3ffd45e 758 Pfam PF07670 Nucleoside recognition 510 691 4.1E-35 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 vm_RS04550 bf87bed85856a959942913dea3ffd45e 758 Gene3D G3DSA:3.40.50.300 4 168 9.5E-34 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04550 bf87bed85856a959942913dea3ffd45e 758 Pfam PF07664 Ferrous iron transport protein B C terminus 452 504 3.3E-19 T 11-11-2016 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 vm_RS04550 bf87bed85856a959942913dea3ffd45e 758 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 9 688 1.4E-178 T 11-11-2016 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 vm_RS04550 bf87bed85856a959942913dea3ffd45e 758 Pfam PF02421 Ferrous iron transport protein B 4 161 6.8E-58 T 11-11-2016 IPR011619 Ferrous iron transport protein B, N-terminal GO:0005525|GO:0015093|GO:0015684|GO:0016021 vm_RS04550 bf87bed85856a959942913dea3ffd45e 758 SUPERFAMILY SSF52540 4 173 6.49E-38 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06685 d844f7a94405b4897d36675f8f387fbd 806 Pfam PF01752 Collagenase 272 558 1.7E-107 T 11-11-2016 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004252|GO:0005576|GO:0006508|GO:0008270 vm_RS06685 d844f7a94405b4897d36675f8f387fbd 806 Pfam PF04151 Bacterial pre-peptidase C-terminal domain 602 673 4.0E-7 T 11-11-2016 IPR007280 Peptidase, C-terminal, archaeal/bacterial vm_RS06685 d844f7a94405b4897d36675f8f387fbd 806 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 97 115 5.9E-29 T 11-11-2016 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004252|GO:0005576|GO:0006508|GO:0008270 vm_RS06685 d844f7a94405b4897d36675f8f387fbd 806 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 374 388 5.9E-29 T 11-11-2016 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004252|GO:0005576|GO:0006508|GO:0008270 vm_RS06685 d844f7a94405b4897d36675f8f387fbd 806 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 434 452 5.9E-29 T 11-11-2016 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004252|GO:0005576|GO:0006508|GO:0008270 vm_RS06685 d844f7a94405b4897d36675f8f387fbd 806 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 458 473 5.9E-29 T 11-11-2016 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004252|GO:0005576|GO:0006508|GO:0008270 vm_RS06685 d844f7a94405b4897d36675f8f387fbd 806 PRINTS PR00931 Microbial collagenase metalloprotease (M9) signature 392 408 5.9E-29 T 11-11-2016 IPR002169 Peptidase M9A/M9B, collagenase, bacterial GO:0004252|GO:0005576|GO:0006508|GO:0008270 vm_RS06685 d844f7a94405b4897d36675f8f387fbd 806 Pfam PF08453 Peptidase family M9 N-terminal 31 210 4.1E-48 T 11-11-2016 IPR013661 Peptidase M9, collagenase, N-terminal domain vm_RS00395 4b8f310825d762db0cab739f619a3cb3 510 Pfam PF02646 RmuC family 181 477 2.6E-105 T 11-11-2016 IPR003798 DNA recombination RmuC vm_RS04825 b9d236115846fa3c5fb33ad299652eb1 316 SMART SM00363 20 80 4.5E-8 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS04825 b9d236115846fa3c5fb33ad299652eb1 316 Pfam PF00849 RNA pseudouridylate synthase 103 248 5.6E-32 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS04825 b9d236115846fa3c5fb33ad299652eb1 316 SUPERFAMILY SSF55120 97 312 6.08E-66 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS04825 b9d236115846fa3c5fb33ad299652eb1 316 SUPERFAMILY SSF55174 19 71 4.27E-9 T 11-11-2016 vm_RS04825 b9d236115846fa3c5fb33ad299652eb1 316 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 313 4.3E-92 T 11-11-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS04825 b9d236115846fa3c5fb33ad299652eb1 316 Gene3D G3DSA:3.10.290.10 20 68 8.5E-8 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS04825 b9d236115846fa3c5fb33ad299652eb1 316 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 142 156 - T 11-11-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS04825 b9d236115846fa3c5fb33ad299652eb1 316 Pfam PF01479 S4 domain 20 66 4.0E-9 T 11-11-2016 IPR002942 RNA-binding S4 domain GO:0003723 vm_RS07335 842bc9640432502ed038c486b4530312 620 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 413 618 1.4E-42 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS07335 842bc9640432502ed038c486b4530312 620 Gene3D G3DSA:1.10.287.950 373 588 5.0E-48 T 11-11-2016 vm_RS07335 842bc9640432502ed038c486b4530312 620 SMART SM00283 358 619 7.6E-60 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS07335 842bc9640432502ed038c486b4530312 620 SMART SM00304 289 343 7.0E-9 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS07335 842bc9640432502ed038c486b4530312 620 Pfam PF00672 HAMP domain 272 339 2.6E-11 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS07335 842bc9640432502ed038c486b4530312 620 SUPERFAMILY SSF58104 311 620 1.7E-66 T 11-11-2016 vm_RS09835 5393416f53eac0d3c3aa1da67a864205 109 Pfam PF02575 YbaB/EbfC DNA-binding family 11 100 7.7E-36 T 11-11-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family vm_RS09835 5393416f53eac0d3c3aa1da67a864205 109 Gene3D G3DSA:3.30.1310.10 1 109 1.5E-51 T 11-11-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family vm_RS09835 5393416f53eac0d3c3aa1da67a864205 109 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 1 105 2.7E-39 T 11-11-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family vm_RS09835 5393416f53eac0d3c3aa1da67a864205 109 PIRSF PIRSF004555 3 109 4.2E-40 T 11-11-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family vm_RS09835 5393416f53eac0d3c3aa1da67a864205 109 SUPERFAMILY SSF82607 11 103 1.12E-36 T 11-11-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family vm_RS09835 5393416f53eac0d3c3aa1da67a864205 109 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 5 98 23.506 T 11-11-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family vm_RS09830 fbf0407985b03ac9318d3793af5daac1 200 Hamap MF_00017 Recombination protein RecR [recR]. 1 199 100.936 T 11-11-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 vm_RS09830 fbf0407985b03ac9318d3793af5daac1 200 Pfam PF02132 RecR protein 40 77 2.5E-15 T 11-11-2016 IPR023628 Recombination protein RecR, C4-type zinc finger vm_RS09830 fbf0407985b03ac9318d3793af5daac1 200 SMART SM00493 81 166 2.6E-18 T 11-11-2016 IPR006171 Toprim domain vm_RS09830 fbf0407985b03ac9318d3793af5daac1 200 Gene3D G3DSA:3.40.50.140 135 171 5.7E-4 T 11-11-2016 IPR006171 Toprim domain vm_RS09830 fbf0407985b03ac9318d3793af5daac1 200 SUPERFAMILY SSF111304 2 199 6.67E-71 T 11-11-2016 IPR023627 Recombination protein RecR vm_RS09830 fbf0407985b03ac9318d3793af5daac1 200 TIGRFAM TIGR00615 recR: recombination protein RecR 3 197 4.8E-79 T 11-11-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 vm_RS09830 fbf0407985b03ac9318d3793af5daac1 200 Pfam PF13662 Toprim domain 82 172 1.2E-23 T 11-11-2016 IPR006171 Toprim domain vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 Gene3D G3DSA:2.40.37.10 269 414 2.6E-50 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 36 283 5.2E-73 T 11-11-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 58 76 - T 11-11-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 5 412 4.2E-171 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 287 390 3.4E-17 T 11-11-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 SUPERFAMILY SSF51419 27 284 8.64E-82 T 11-11-2016 IPR029066 PLP-binding barrel vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 PRINTS PR01181 Diaminopimelate decarboxylase signature 76 93 3.2E-31 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 PRINTS PR01181 Diaminopimelate decarboxylase signature 380 402 3.2E-31 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 PRINTS PR01181 Diaminopimelate decarboxylase signature 165 174 3.2E-31 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 PRINTS PR01181 Diaminopimelate decarboxylase signature 300 318 3.2E-31 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 58 76 7.9E-27 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 191 204 7.9E-27 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 78 90 7.9E-27 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 370 383 7.9E-27 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 272 291 7.9E-27 T 11-11-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 SUPERFAMILY SSF50621 259 414 7.12E-54 T 11-11-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 16 413 41.498 T 11-11-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 Gene3D G3DSA:3.20.20.10 37 268 1.2E-81 T 11-11-2016 IPR029066 PLP-binding barrel vm_RS00580 8e297a2e13f66f538276166d080f0d4c 417 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 227 242 - T 11-11-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site vm_RS00905 480891e2e0fc4eeb2227ecb9036c5fac 194 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 3 186 3.0E-13 T 11-11-2016 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 vm_RS00905 480891e2e0fc4eeb2227ecb9036c5fac 194 Pfam PF12019 Type II transport protein GspH 42 181 2.2E-8 T 11-11-2016 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 vm_RS00905 480891e2e0fc4eeb2227ecb9036c5fac 194 PRINTS PR00885 Bacterial general secretion pathway protein H signature 2 16 3.1E-22 T 11-11-2016 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 vm_RS00905 480891e2e0fc4eeb2227ecb9036c5fac 194 PRINTS PR00885 Bacterial general secretion pathway protein H signature 17 31 3.1E-22 T 11-11-2016 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 vm_RS00905 480891e2e0fc4eeb2227ecb9036c5fac 194 PRINTS PR00885 Bacterial general secretion pathway protein H signature 145 160 3.1E-22 T 11-11-2016 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 vm_RS00905 480891e2e0fc4eeb2227ecb9036c5fac 194 Gene3D G3DSA:3.55.40.10 37 193 1.3E-52 T 11-11-2016 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 vm_RS00905 480891e2e0fc4eeb2227ecb9036c5fac 194 SUPERFAMILY SSF54523 7 79 1.02E-7 T 11-11-2016 vm_RS00905 480891e2e0fc4eeb2227ecb9036c5fac 194 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS00905 480891e2e0fc4eeb2227ecb9036c5fac 194 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 1.7E-5 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS00915 fbc754ef1275f3525a7a900ebe78f3bd 221 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 14 36 1.1E-7 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS00915 fbc754ef1275f3525a7a900ebe78f3bd 221 SUPERFAMILY SSF54523 47 209 1.92E-55 T 11-11-2016 vm_RS00915 fbc754ef1275f3525a7a900ebe78f3bd 221 Gene3D G3DSA:2.10.70.20 160 208 9.6E-22 T 11-11-2016 vm_RS00915 fbc754ef1275f3525a7a900ebe78f3bd 221 Pfam PF13633 Prokaryotic N-terminal methylation site 14 39 2.1E-10 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS00915 fbc754ef1275f3525a7a900ebe78f3bd 221 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 14 34 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS00915 fbc754ef1275f3525a7a900ebe78f3bd 221 Pfam PF11612 Type II secretion system (T2SS), protein J 66 203 3.7E-40 T 11-11-2016 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 vm_RS00915 fbc754ef1275f3525a7a900ebe78f3bd 221 TIGRFAM TIGR01711 gspJ: type II secretion system protein J 14 205 7.1E-95 T 11-11-2016 IPR010055 Type II secretion system protein J GO:0008565|GO:0015627|GO:0015628 vm_RS00915 fbc754ef1275f3525a7a900ebe78f3bd 221 Gene3D G3DSA:3.10.610.10 45 158 9.2E-45 T 11-11-2016 vm_RS02560 655dbd81e3ea914e3c335519bff5b42d 218 Gene3D G3DSA:3.40.50.1360 1 136 2.1E-58 T 11-11-2016 vm_RS02560 655dbd81e3ea914e3c335519bff5b42d 218 SUPERFAMILY SSF100950 1 146 1.58E-47 T 11-11-2016 vm_RS02560 655dbd81e3ea914e3c335519bff5b42d 218 SUPERFAMILY SSF75445 127 198 3.27E-24 T 11-11-2016 vm_RS02560 655dbd81e3ea914e3c335519bff5b42d 218 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 6 214 3.8E-69 T 11-11-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 vm_RS02560 655dbd81e3ea914e3c335519bff5b42d 218 Gene3D G3DSA:3.30.70.260 137 196 8.5E-30 T 11-11-2016 vm_RS02560 655dbd81e3ea914e3c335519bff5b42d 218 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 217 33.938 T 11-11-2016 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 vm_RS02560 655dbd81e3ea914e3c335519bff5b42d 218 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 49 213 1.3E-58 T 11-11-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-5659996|Reactome: R-HSA-6791461|Reactome: R-HSA-71336 vm_RS13280 8576383f6d50bde590c1c69d401813c6 345 Gene3D G3DSA:2.130.10.10 6 340 4.3E-75 T 11-11-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 vm_RS13280 8576383f6d50bde590c1c69d401813c6 345 SUPERFAMILY SSF51004 29 327 5.89E-30 T 11-11-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain vm_RS13280 8576383f6d50bde590c1c69d401813c6 345 Pfam PF10282 Lactonase, 7-bladed beta-propeller 8 339 4.9E-97 T 11-11-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31 vm_RS04260 96aadb75c369b0efb8d6166876139429 136 TIGRFAM TIGR00208 fliS: flagellar protein FliS 4 122 2.4E-26 T 11-11-2016 IPR003713 Flagellar protein FliS GO:0044780 vm_RS04260 96aadb75c369b0efb8d6166876139429 136 Gene3D G3DSA:1.20.120.340 6 126 5.9E-43 T 11-11-2016 IPR003713 Flagellar protein FliS GO:0044780 vm_RS04260 96aadb75c369b0efb8d6166876139429 136 Pfam PF02561 Flagellar protein FliS 6 122 1.5E-38 T 11-11-2016 IPR003713 Flagellar protein FliS GO:0044780 vm_RS04260 96aadb75c369b0efb8d6166876139429 136 PIRSF PIRSF039090 1 133 8.1E-45 T 11-11-2016 IPR003713 Flagellar protein FliS GO:0044780 vm_RS04260 96aadb75c369b0efb8d6166876139429 136 SUPERFAMILY SSF101116 6 127 6.15E-40 T 11-11-2016 IPR003713 Flagellar protein FliS GO:0044780 vm_RS12380 64813eb7cd260de05a8a035c7a4495b6 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 121 140 1.1E-50 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 vm_RS12380 64813eb7cd260de05a8a035c7a4495b6 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 5 23 1.1E-50 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 vm_RS12380 64813eb7cd260de05a8a035c7a4495b6 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 49 67 1.1E-50 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 vm_RS12380 64813eb7cd260de05a8a035c7a4495b6 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 77 95 1.1E-50 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 vm_RS12380 64813eb7cd260de05a8a035c7a4495b6 172 PRINTS PR01487 Bacterial autoinducer-2 (AI-2) production protein LuxS signature 28 46 1.1E-50 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 vm_RS12380 64813eb7cd260de05a8a035c7a4495b6 172 PIRSF PIRSF006160 1 162 3.5E-65 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 vm_RS12380 64813eb7cd260de05a8a035c7a4495b6 172 SUPERFAMILY SSF63411 4 162 6.68E-65 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS12380 64813eb7cd260de05a8a035c7a4495b6 172 Hamap MF_00091 S-ribosylhomocysteine lyase [luxS]. 1 159 34.755 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 vm_RS12380 64813eb7cd260de05a8a035c7a4495b6 172 Gene3D G3DSA:3.30.1360.80 1 171 9.7E-75 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 vm_RS12380 64813eb7cd260de05a8a035c7a4495b6 172 ProDom PD013172 LYASE SYNTHESIS LUXS AUTOINDUCER-2 PRODUCTION AUTOINDUCER S-RIBOSYLHOMOCYSTEINE AI-2 QUORUM SENSING 9 154 1.0E-83 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 vm_RS12380 64813eb7cd260de05a8a035c7a4495b6 172 Pfam PF02664 S-Ribosylhomocysteinase (LuxS) 4 153 1.9E-60 T 11-11-2016 IPR003815 S-ribosylhomocysteinase (LuxS) GO:0005506|GO:0009372|GO:0043768 KEGG: 00270+4.4.1.21|MetaCyc: PWY-6151|MetaCyc: PWY-6153|MetaCyc: PWY-6154 vm_RS04870 a4b0f5dacef66d32b376b97131c57245 416 SUPERFAMILY SSF53901 5 254 2.74E-82 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS04870 a4b0f5dacef66d32b376b97131c57245 416 SMART SM00825 Beta-ketoacyl synthase 8 416 3.0E-17 T 11-11-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain vm_RS04870 a4b0f5dacef66d32b376b97131c57245 416 Gene3D G3DSA:3.40.47.10 4 262 6.1E-82 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS04870 a4b0f5dacef66d32b376b97131c57245 416 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 6 249 3.6E-65 T 11-11-2016 IPR014030 Beta-ketoacyl synthase, N-terminal vm_RS04870 a4b0f5dacef66d32b376b97131c57245 416 Gene3D G3DSA:3.40.47.10 265 415 7.9E-59 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS04870 a4b0f5dacef66d32b376b97131c57245 416 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 157 173 - T 11-11-2016 IPR018201 Beta-ketoacyl synthase, active site vm_RS04870 a4b0f5dacef66d32b376b97131c57245 416 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 6 414 2.3E-193 T 11-11-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 vm_RS04870 a4b0f5dacef66d32b376b97131c57245 416 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 257 372 3.3E-37 T 11-11-2016 IPR014031 Beta-ketoacyl synthase, C-terminal vm_RS04870 a4b0f5dacef66d32b376b97131c57245 416 SUPERFAMILY SSF53901 217 415 2.62E-68 T 11-11-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 vm_RS04870 a4b0f5dacef66d32b376b97131c57245 416 PIRSF PIRSF000447 3 416 3.4E-206 T 11-11-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 vm_RS19305 5c520c253dd65f4ef30828894696a475 218 SMART SM01231 82 142 7.6E-18 T 11-11-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 vm_RS19305 5c520c253dd65f4ef30828894696a475 218 SUPERFAMILY SSF55874 145 216 1.25E-6 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS19305 5c520c253dd65f4ef30828894696a475 218 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 82 142 1.5E-13 T 11-11-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 vm_RS19305 5c520c253dd65f4ef30828894696a475 218 Gene3D G3DSA:3.30.565.10 144 216 3.3E-5 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS19305 5c520c253dd65f4ef30828894696a475 218 SUPERFAMILY SSF47384 83 143 6.28E-15 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS19305 5c520c253dd65f4ef30828894696a475 218 Gene3D G3DSA:1.10.287.560 82 143 5.8E-20 T 11-11-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 vm_RS02775 6d82f11a56df50fdb85b66f92c2b4f8e 505 SMART SM00880 229 497 4.8E-25 T 11-11-2016 IPR007899 CHAD domain vm_RS02775 6d82f11a56df50fdb85b66f92c2b4f8e 505 Pfam PF01928 CYTH domain 3 197 6.2E-36 T 11-11-2016 IPR023577 CYTH domain Reactome: R-HSA-196819 vm_RS02775 6d82f11a56df50fdb85b66f92c2b4f8e 505 Gene3D G3DSA:2.40.320.10 1 209 3.9E-39 T 11-11-2016 IPR023577 CYTH domain Reactome: R-HSA-196819 vm_RS02775 6d82f11a56df50fdb85b66f92c2b4f8e 505 Pfam PF05235 CHAD domain 230 384 2.3E-8 T 11-11-2016 IPR007899 CHAD domain vm_RS02775 6d82f11a56df50fdb85b66f92c2b4f8e 505 SUPERFAMILY SSF55154 1 216 6.38E-53 T 11-11-2016 IPR033469 CYTH-like domain Reactome: R-HSA-196819 vm_RS02775 6d82f11a56df50fdb85b66f92c2b4f8e 505 SMART SM01118 2 203 1.2E-43 T 11-11-2016 IPR023577 CYTH domain Reactome: R-HSA-196819 vm_RS12265 b1a59998f6bc3f86e35dfe196edba6b5 601 Gene3D G3DSA:3.40.50.2300 367 530 5.5E-51 T 11-11-2016 vm_RS12265 b1a59998f6bc3f86e35dfe196edba6b5 601 Pfam PF04348 LppC putative lipoprotein 39 599 1.2E-217 T 11-11-2016 IPR007443 Penicillin-binding protein activator LpoA vm_RS12265 b1a59998f6bc3f86e35dfe196edba6b5 601 Hamap MF_01890 Penicillin-binding protein activator LpoA [lpoA]. 1 601 29.915 T 11-11-2016 IPR007443 Penicillin-binding protein activator LpoA vm_RS12265 b1a59998f6bc3f86e35dfe196edba6b5 601 SUPERFAMILY SSF53822 454 598 3.77E-68 T 11-11-2016 IPR028082 Periplasmic binding protein-like I vm_RS12265 b1a59998f6bc3f86e35dfe196edba6b5 601 SUPERFAMILY SSF53822 260 426 3.77E-68 T 11-11-2016 IPR028082 Periplasmic binding protein-like I vm_RS12265 b1a59998f6bc3f86e35dfe196edba6b5 601 Gene3D G3DSA:3.40.50.2300 256 366 1.7E-53 T 11-11-2016 vm_RS12265 b1a59998f6bc3f86e35dfe196edba6b5 601 Gene3D G3DSA:3.40.50.2300 531 594 1.7E-53 T 11-11-2016 vm_RS02020 76ccbe69aefad1bfb795b52145b3e6f0 101 ProSitePatterns PS00527 Ribosomal protein S14 signature. 63 85 - T 11-11-2016 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02020 76ccbe69aefad1bfb795b52145b3e6f0 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.729 T 11-11-2016 IPR023036 Ribosomal protein S14, bacterial/plastid vm_RS02020 76ccbe69aefad1bfb795b52145b3e6f0 101 Gene3D G3DSA:4.10.830.10 41 101 2.1E-29 T 11-11-2016 vm_RS02020 76ccbe69aefad1bfb795b52145b3e6f0 101 Pfam PF00253 Ribosomal protein S14p/S29e 47 100 6.5E-24 T 11-11-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS02020 76ccbe69aefad1bfb795b52145b3e6f0 101 SUPERFAMILY SSF57716 2 101 1.71E-36 T 11-11-2016 vm_RS10460 d418385788887acb1bb80f5fe1faf622 439 Pfam PF04932 O-Antigen ligase 217 358 8.4E-20 T 11-11-2016 IPR007016 O-antigen ligase-related vm_RS14450 4004a66c337c2524c3434e91af9f23fd 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 25 46 1.5E-49 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 vm_RS14450 4004a66c337c2524c3434e91af9f23fd 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 90 106 1.5E-49 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 vm_RS14450 4004a66c337c2524c3434e91af9f23fd 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 54 78 1.5E-49 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 vm_RS14450 4004a66c337c2524c3434e91af9f23fd 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 7 25 1.5E-49 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 vm_RS14450 4004a66c337c2524c3434e91af9f23fd 164 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 117 139 1.5E-49 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 vm_RS14450 4004a66c337c2524c3434e91af9f23fd 164 SUPERFAMILY SSF52374 8 162 3.75E-44 T 11-11-2016 vm_RS14450 4004a66c337c2524c3434e91af9f23fd 164 Pfam PF01467 Cytidylyltransferase-like 10 138 1.4E-19 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 vm_RS14450 4004a66c337c2524c3434e91af9f23fd 164 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 16 118 0.007 T 11-11-2016 vm_RS14450 4004a66c337c2524c3434e91af9f23fd 164 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 7 163 35.182 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 vm_RS14450 4004a66c337c2524c3434e91af9f23fd 164 Gene3D G3DSA:3.40.50.620 8 162 1.3E-53 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS14450 4004a66c337c2524c3434e91af9f23fd 164 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 8 68 1.4E-19 T 11-11-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 vm_RS14450 4004a66c337c2524c3434e91af9f23fd 164 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 9 161 4.4E-58 T 11-11-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3 vm_RS02430 f8aa2cccde4e677cf8c1a30024a05b41 149 Gene3D G3DSA:3.40.50.10110 1 146 8.1E-44 T 11-11-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 vm_RS02430 f8aa2cccde4e677cf8c1a30024a05b41 149 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 142 1.1E-31 T 11-11-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 vm_RS02430 f8aa2cccde4e677cf8c1a30024a05b41 149 SUPERFAMILY SSF102400 1 145 5.49E-42 T 11-11-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 vm_RS13725 90d54fe65e85a3605296f18edcd82c03 149 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 1.0E-55 T 11-11-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13725 90d54fe65e85a3605296f18edcd82c03 149 SUPERFAMILY SSF55653 60 149 6.41E-26 T 11-11-2016 IPR020069 Ribosomal protein L9, C-terminal vm_RS13725 90d54fe65e85a3605296f18edcd82c03 149 SUPERFAMILY SSF55658 1 57 3.14E-19 T 11-11-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal vm_RS13725 90d54fe65e85a3605296f18edcd82c03 149 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 149 26.301 T 11-11-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13725 90d54fe65e85a3605296f18edcd82c03 149 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 11-11-2016 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13725 90d54fe65e85a3605296f18edcd82c03 149 Gene3D G3DSA:3.40.5.10 1 52 3.7E-25 T 11-11-2016 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13725 90d54fe65e85a3605296f18edcd82c03 149 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 148 2.3E-25 T 11-11-2016 IPR020069 Ribosomal protein L9, C-terminal vm_RS13725 90d54fe65e85a3605296f18edcd82c03 149 Gene3D G3DSA:3.10.430.100 61 149 2.3E-28 T 11-11-2016 IPR020069 Ribosomal protein L9, C-terminal vm_RS13725 90d54fe65e85a3605296f18edcd82c03 149 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 6.4E-22 T 11-11-2016 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS04875 832bbfc81e90316594b48044d4df3169 267 ProSitePatterns PS00770 Aminotransferases class-IV signature. 173 202 - T 11-11-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: R-HSA-70895 vm_RS04875 832bbfc81e90316594b48044d4df3169 267 Pfam PF01063 Amino-transferase class IV 24 247 9.4E-45 T 11-11-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 vm_RS04875 832bbfc81e90316594b48044d4df3169 267 Gene3D G3DSA:3.30.470.10 1 108 1.9E-31 T 11-11-2016 vm_RS04875 832bbfc81e90316594b48044d4df3169 267 Gene3D G3DSA:3.20.10.10 123 262 3.0E-40 T 11-11-2016 vm_RS04875 832bbfc81e90316594b48044d4df3169 267 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 3 263 5.5E-102 T 11-11-2016 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543 vm_RS04875 832bbfc81e90316594b48044d4df3169 267 SUPERFAMILY SSF56752 1 261 2.35E-70 T 11-11-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: R-HSA-70895 vm_RS05870 62dc40192760b762b945fc0f8dc7d051 227 TIGRFAM TIGR02796 tolQ: protein TolQ 6 220 1.0E-91 T 11-11-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 vm_RS05870 62dc40192760b762b945fc0f8dc7d051 227 Pfam PF01618 MotA/TolQ/ExbB proton channel family 80 207 2.3E-42 T 11-11-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 vm_RS10805 3c68a19aa6e236e8ae8ba285df3d80bf 519 Pfam PF03806 AbgT putative transporter family 19 517 2.8E-218 T 11-11-2016 IPR004697 p-aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 vm_RS11990 a113689cc6b44c0f4dac58f09207902b 111 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 3 73 2.6E-26 T 11-11-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 vm_RS11990 a113689cc6b44c0f4dac58f09207902b 111 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 2.5E-45 T 11-11-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 vm_RS11990 a113689cc6b44c0f4dac58f09207902b 111 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 2.5E-45 T 11-11-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 vm_RS11990 a113689cc6b44c0f4dac58f09207902b 111 PRINTS PR01651 Protein-export SecG membrane protein signature 38 54 2.5E-45 T 11-11-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 vm_RS11990 a113689cc6b44c0f4dac58f09207902b 111 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 2.5E-45 T 11-11-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 vm_RS11990 a113689cc6b44c0f4dac58f09207902b 111 Pfam PF03840 Preprotein translocase SecG subunit 4 72 1.8E-22 T 11-11-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 vm_RS05420 b596b97184f8710ef7d40a34eaba5673 487 Pfam PF01943 Polysaccharide biosynthesis protein 19 272 2.1E-14 T 11-11-2016 IPR002797 Polysaccharide biosynthesis protein GO:0016020 vm_RS12370 9d8472334205dfa58ac72c272de68c23 264 Pfam PF01578 Cytochrome C assembly protein 37 262 7.8E-46 T 11-11-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 vm_RS09125 19945741b7ab4947aad25a1852c7a832 87 SUPERFAMILY SSF52833 3 82 1.54E-21 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS09125 19945741b7ab4947aad25a1852c7a832 87 Gene3D G3DSA:3.40.30.10 2 82 5.2E-27 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS09125 19945741b7ab4947aad25a1852c7a832 87 TIGRFAM TIGR02183 GRXA: glutaredoxin, GrxA family 2 85 2.7E-49 T 11-11-2016 IPR011902 Glutaredoxin, GrxA GO:0009055|GO:0015035|GO:0045454 vm_RS09125 19945741b7ab4947aad25a1852c7a832 87 PRINTS PR00160 Glutaredoxin signature 66 79 2.6E-11 T 11-11-2016 IPR014025 Glutaredoxin subgroup vm_RS09125 19945741b7ab4947aad25a1852c7a832 87 PRINTS PR00160 Glutaredoxin signature 52 65 2.6E-11 T 11-11-2016 IPR014025 Glutaredoxin subgroup vm_RS09125 19945741b7ab4947aad25a1852c7a832 87 PRINTS PR00160 Glutaredoxin signature 3 21 2.6E-11 T 11-11-2016 IPR014025 Glutaredoxin subgroup vm_RS09125 19945741b7ab4947aad25a1852c7a832 87 Pfam PF00462 Glutaredoxin 3 69 1.6E-16 T 11-11-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 vm_RS01960 e3ba5fe6e6dd088bb25a5aa5e7de3ce3 200 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 12 197 5.0E-76 T 11-11-2016 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS01960 e3ba5fe6e6dd088bb25a5aa5e7de3ce3 200 Gene3D G3DSA:3.40.1370.10 52 200 1.3E-59 T 11-11-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 vm_RS01960 e3ba5fe6e6dd088bb25a5aa5e7de3ce3 200 Pfam PF00573 Ribosomal protein L4/L1 family 12 197 1.3E-65 T 11-11-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 vm_RS01960 e3ba5fe6e6dd088bb25a5aa5e7de3ce3 200 SUPERFAMILY SSF52166 8 199 7.46E-74 T 11-11-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 vm_RS01960 e3ba5fe6e6dd088bb25a5aa5e7de3ce3 200 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 3 200 33.953 T 11-11-2016 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS07010 27a7e569da491817a0177ff1213fcca0 146 Pfam PF04224 Protein of unknown function, DUF417 4 145 3.0E-44 T 11-11-2016 IPR007339 Protein of unknown function DUF417 vm_RS07010 27a7e569da491817a0177ff1213fcca0 146 PIRSF PIRSF028065 1 146 1.4E-72 T 11-11-2016 IPR016865 Uncharacterised conserved protein UCP028065, membrane vm_RS07770 05d594b83995cf5dfd7544575782d022 267 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 5 253 8.0E-127 T 11-11-2016 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52 vm_RS07770 05d594b83995cf5dfd7544575782d022 267 SUPERFAMILY SSF51621 1 253 5.34E-80 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS07770 05d594b83995cf5dfd7544575782d022 267 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 19 242 2.4E-51 T 11-11-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 vm_RS07770 05d594b83995cf5dfd7544575782d022 267 Gene3D G3DSA:3.20.20.60 3 253 2.0E-80 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS05770 51b98fdffbc5df6ff6f11c4784b83c69 268 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 260 2.9E-27 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase vm_RS05770 51b98fdffbc5df6ff6f11c4784b83c69 268 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 11-11-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 vm_RS05770 51b98fdffbc5df6ff6f11c4784b83c69 268 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 268 2.0E-86 T 11-11-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 vm_RS05770 51b98fdffbc5df6ff6f11c4784b83c69 268 SUPERFAMILY SSF56219 1 268 8.64E-86 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase vm_RS05770 51b98fdffbc5df6ff6f11c4784b83c69 268 Gene3D G3DSA:3.60.10.10 1 268 9.9E-86 T 11-11-2016 IPR005135 Endonuclease/exonuclease/phosphatase vm_RS05770 51b98fdffbc5df6ff6f11c4784b83c69 268 ProSitePatterns PS00727 AP endonucleases family 1 signature 2. 198 214 - T 11-11-2016 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 Reactome: R-HSA-110357|Reactome: R-HSA-110362|Reactome: R-HSA-110373|Reactome: R-HSA-5651801|Reactome: R-HSA-73930|Reactome: R-HSA-73933 vm_RS05770 51b98fdffbc5df6ff6f11c4784b83c69 268 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 267 6.1E-100 T 11-11-2016 vm_RS09325 b0322d03b288943cdd0a11d62260a13d 326 SUPERFAMILY SSF51395 1 310 2.38E-72 T 11-11-2016 vm_RS09325 b0322d03b288943cdd0a11d62260a13d 326 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 11-11-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 vm_RS09325 b0322d03b288943cdd0a11d62260a13d 326 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 310 53.187 T 11-11-2016 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 vm_RS09325 b0322d03b288943cdd0a11d62260a13d 326 Gene3D G3DSA:3.20.20.70 2 241 7.8E-62 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS09325 b0322d03b288943cdd0a11d62260a13d 326 Pfam PF01207 Dihydrouridine synthase (Dus) 5 287 2.9E-76 T 11-11-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 vm_RS09325 b0322d03b288943cdd0a11d62260a13d 326 PIRSF PIRSF006621 1 319 8.2E-74 T 11-11-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 vm_RS07975 715a02dbc49c47990ac0cabfbe6a4159 358 SUPERFAMILY SSF55073 202 352 1.41E-43 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS07975 715a02dbc49c47990ac0cabfbe6a4159 358 SMART SM00267 183 353 3.6E-44 T 11-11-2016 IPR000160 GGDEF domain vm_RS07975 715a02dbc49c47990ac0cabfbe6a4159 358 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 196 353 1.7E-39 T 11-11-2016 IPR000160 GGDEF domain vm_RS07975 715a02dbc49c47990ac0cabfbe6a4159 358 Pfam PF00990 Diguanylate cyclase, GGDEF domain 198 349 3.7E-38 T 11-11-2016 IPR000160 GGDEF domain vm_RS07975 715a02dbc49c47990ac0cabfbe6a4159 358 Gene3D G3DSA:3.30.70.270 199 354 5.1E-48 T 11-11-2016 vm_RS11065 105f34877689d5602cd71e2c7bd7e21a 399 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 33 207 1.7E-20 T 11-11-2016 IPR013830 SGNH hydrolase-type esterase domain vm_RS11065 105f34877689d5602cd71e2c7bd7e21a 399 Gene3D G3DSA:3.40.50.1110 25 217 8.0E-29 T 11-11-2016 IPR013830 SGNH hydrolase-type esterase domain vm_RS11065 105f34877689d5602cd71e2c7bd7e21a 399 SUPERFAMILY SSF52266 22 216 1.55E-29 T 11-11-2016 IPR013830 SGNH hydrolase-type esterase domain vm_RS02565 b981b46144f7594851d963b38d6a7377 194 PIRSF PIRSF006806 1 191 4.5E-37 T 11-11-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase vm_RS02565 b981b46144f7594851d963b38d6a7377 194 SUPERFAMILY SSF100950 4 194 1.67E-57 T 11-11-2016 vm_RS02565 b981b46144f7594851d963b38d6a7377 194 Gene3D G3DSA:3.40.50.10420 6 193 1.3E-57 T 11-11-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain vm_RS02565 b981b46144f7594851d963b38d6a7377 194 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 7 188 4.2E-44 T 11-11-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase vm_RS02565 b981b46144f7594851d963b38d6a7377 194 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 7 188 1.4E-54 T 11-11-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase vm_RS07095 a8ca013caabaf60634ec0ceef3986695 135 Gene3D G3DSA:3.40.50.360 4 131 2.8E-45 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS07095 a8ca013caabaf60634ec0ceef3986695 135 Pfam PF07972 NrdI Flavodoxin like 5 122 1.4E-39 T 11-11-2016 IPR004465 Ribonucleotide reductase Class Ib, NrdI vm_RS07095 a8ca013caabaf60634ec0ceef3986695 135 TIGRFAM TIGR00333 nrdI: nrdI protein 5 130 5.5E-40 T 11-11-2016 IPR004465 Ribonucleotide reductase Class Ib, NrdI vm_RS07095 a8ca013caabaf60634ec0ceef3986695 135 Hamap MF_00128 Protein NrdI [nrdI]. 3 133 30.226 T 11-11-2016 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial vm_RS07095 a8ca013caabaf60634ec0ceef3986695 135 PIRSF PIRSF005087 1 135 3.1E-45 T 11-11-2016 IPR004465 Ribonucleotide reductase Class Ib, NrdI vm_RS07095 a8ca013caabaf60634ec0ceef3986695 135 SUPERFAMILY SSF52218 1 132 8.94E-20 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS19985 90ac324e64ad46efed667c03d4dec9e6 162 SUPERFAMILY SSF55874 51 158 8.72E-12 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS19985 90ac324e64ad46efed667c03d4dec9e6 162 SMART SM00388 14 82 5.5E-11 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS19985 90ac324e64ad46efed667c03d4dec9e6 162 Gene3D G3DSA:3.30.565.10 69 161 5.7E-11 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS19985 90ac324e64ad46efed667c03d4dec9e6 162 Pfam PF00512 His Kinase A (phospho-acceptor) domain 15 79 1.2E-12 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS19985 90ac324e64ad46efed667c03d4dec9e6 162 Gene3D G3DSA:1.10.287.130 13 68 5.7E-10 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS19985 90ac324e64ad46efed667c03d4dec9e6 162 SUPERFAMILY SSF47384 10 80 1.22E-13 T 11-11-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 vm_RS02885 4f271dd39799c6e2cacaa402fb3707fc 298 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 8 90 2.7E-19 T 11-11-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 vm_RS02885 4f271dd39799c6e2cacaa402fb3707fc 298 SUPERFAMILY SSF56349 7 290 1.44E-55 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS02885 4f271dd39799c6e2cacaa402fb3707fc 298 Pfam PF00589 Phage integrase family 112 284 3.0E-53 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS02885 4f271dd39799c6e2cacaa402fb3707fc 298 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 9 298 2.0E-116 T 11-11-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 vm_RS02885 4f271dd39799c6e2cacaa402fb3707fc 298 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 4 298 61.465 T 11-11-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 vm_RS02885 4f271dd39799c6e2cacaa402fb3707fc 298 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 6 298 55.657 T 11-11-2016 IPR023009 Tyrosine recombinase XerC/XerD vm_RS02885 4f271dd39799c6e2cacaa402fb3707fc 298 Gene3D G3DSA:1.10.443.10 113 289 1.8E-56 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS02885 4f271dd39799c6e2cacaa402fb3707fc 298 Gene3D G3DSA:1.10.150.130 7 99 4.4E-29 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal vm_RS10125 1ee439de700e3a7706fac07f6dc3acf3 504 Gene3D G3DSA:3.40.50.2020 270 443 2.2E-46 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS10125 1ee439de700e3a7706fac07f6dc3acf3 504 Gene3D G3DSA:3.60.20.10 2 257 6.8E-65 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS10125 1ee439de700e3a7706fac07f6dc3acf3 504 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 463 4.9E-165 T 11-11-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 vm_RS10125 1ee439de700e3a7706fac07f6dc3acf3 504 PIRSF PIRSF000485 1 480 9.8E-169 T 11-11-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 vm_RS10125 1ee439de700e3a7706fac07f6dc3acf3 504 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 465 44.58 T 11-11-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 vm_RS10125 1ee439de700e3a7706fac07f6dc3acf3 504 SUPERFAMILY SSF53271 249 482 2.1E-69 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS10125 1ee439de700e3a7706fac07f6dc3acf3 504 SUPERFAMILY SSF56235 2 256 2.06E-72 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS10125 1ee439de700e3a7706fac07f6dc3acf3 504 Pfam PF13522 Glutamine amidotransferase domain 64 207 1.2E-17 T 11-11-2016 vm_RS04665 9c9dacf4cc28192151d8bca81c619c90 68 Pfam PF04995 Heme exporter protein D (CcmD) 13 56 1.6E-15 T 11-11-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 vm_RS04665 9c9dacf4cc28192151d8bca81c619c90 68 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 10 56 3.0E-16 T 11-11-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 vm_RS00285 ccd1da76f6ed985548ef58a0d2533bff 646 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 143 595 6.2E-220 T 11-11-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 vm_RS00285 ccd1da76f6ed985548ef58a0d2533bff 646 Pfam PF13667 ThiC-associated domain 22 103 2.1E-32 T 11-11-2016 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 vm_RS00285 ccd1da76f6ed985548ef58a0d2533bff 646 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 143 597 56.418 T 11-11-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 vm_RS00285 ccd1da76f6ed985548ef58a0d2533bff 646 Pfam PF01964 Radical SAM ThiC family 144 592 4.2E-201 T 11-11-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890 vm_RS09960 d8d5cba3d6bd10b4cd35817291b61196 154 Gene3D G3DSA:3.90.1170.40 3 149 1.8E-58 T 11-11-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 vm_RS09960 d8d5cba3d6bd10b4cd35817291b61196 154 Pfam PF02391 MoaE protein 7 120 2.4E-37 T 11-11-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 vm_RS09960 d8d5cba3d6bd10b4cd35817291b61196 154 SUPERFAMILY SSF54690 4 149 4.84E-55 T 11-11-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|Reactome: R-HSA-947581 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 4.2E-13 T 11-11-2016 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 4.2E-13 T 11-11-2016 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 4.2E-13 T 11-11-2016 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 1.1E-5 T 11-11-2016 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 1.1E-5 T 11-11-2016 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 192 1.4E-86 T 11-11-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 Gene3D G3DSA:3.40.50.880 2 191 5.4E-68 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 SUPERFAMILY SSF52317 1 191 9.7E-56 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 PRINTS PR00097 Anthranilate synthase component II signature 99 107 3.6E-36 T 11-11-2016 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 PRINTS PR00097 Anthranilate synthase component II signature 119 131 3.6E-36 T 11-11-2016 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 PRINTS PR00097 Anthranilate synthase component II signature 2 16 3.6E-36 T 11-11-2016 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 PRINTS PR00097 Anthranilate synthase component II signature 74 85 3.6E-36 T 11-11-2016 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 PRINTS PR00097 Anthranilate synthase component II signature 47 56 3.6E-36 T 11-11-2016 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 PRINTS PR00097 Anthranilate synthase component II signature 169 182 3.6E-36 T 11-11-2016 vm_RS01845 771b5b688bad6b91764e40b922dffd5d 192 Pfam PF00117 Glutamine amidotransferase class-I 4 190 6.6E-56 T 11-11-2016 IPR017926 Glutamine amidotransferase vm_RS09270 85311a5fa70cfb62f331edcac1d8d9ba 287 Gene3D G3DSA:3.30.2010.10 74 160 1.9E-32 T 11-11-2016 vm_RS09270 85311a5fa70cfb62f331edcac1d8d9ba 287 Hamap MF_00188 Protease HtpX [htpX]. 1 287 25.433 T 11-11-2016 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 vm_RS09270 85311a5fa70cfb62f331edcac1d8d9ba 287 Pfam PF01435 Peptidase family M48 79 287 9.5E-41 T 11-11-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 vm_RS10645 8000f0ebe38a0de49c5b3163f0ec6663 521 SMART SM00267 351 521 2.0E-36 T 11-11-2016 IPR000160 GGDEF domain vm_RS10645 8000f0ebe38a0de49c5b3163f0ec6663 521 SUPERFAMILY SSF55073 366 519 7.14E-37 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS10645 8000f0ebe38a0de49c5b3163f0ec6663 521 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 360 518 1.6E-36 T 11-11-2016 IPR000160 GGDEF domain vm_RS10645 8000f0ebe38a0de49c5b3163f0ec6663 521 Gene3D G3DSA:3.30.70.270 363 519 2.4E-41 T 11-11-2016 vm_RS10645 8000f0ebe38a0de49c5b3163f0ec6663 521 Pfam PF00990 Diguanylate cyclase, GGDEF domain 361 514 5.1E-36 T 11-11-2016 IPR000160 GGDEF domain vm_RS12625 13785e4990eb67dd02577fea265263da 407 SMART SM00954 111 239 9.0E-18 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 vm_RS12625 13785e4990eb67dd02577fea265263da 407 SUPERFAMILY SSF81301 78 230 1.63E-23 T 11-11-2016 vm_RS12625 13785e4990eb67dd02577fea265263da 407 Gene3D G3DSA:3.30.460.10 73 219 3.5E-21 T 11-11-2016 vm_RS12625 13785e4990eb67dd02577fea265263da 407 Pfam PF04607 Region found in RelA / SpoT proteins 111 228 1.2E-15 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 vm_RS06045 8a2c1d41589258e4d54223a6c32a9938 237 Gene3D G3DSA:3.30.1300.30 144 237 2.7E-7 T 11-11-2016 vm_RS06045 8a2c1d41589258e4d54223a6c32a9938 237 Pfam PF03895 YadA-like C-terminal region 157 237 2.5E-13 T 11-11-2016 IPR005594 YadA-like, C-terminal vm_RS06045 8a2c1d41589258e4d54223a6c32a9938 237 SUPERFAMILY SSF54523 144 237 4.71E-10 T 11-11-2016 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 Pfam PF00391 PEP-utilising enzyme, mobile domain 319 391 2.2E-16 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 SUPERFAMILY SSF55781 2 158 2.18E-32 T 11-11-2016 IPR029016 GAF domain-like vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 612 630 - T 11-11-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 171 721 1.9E-131 T 11-11-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 SUPERFAMILY SSF47831 203 311 1.07E-26 T 11-11-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 Pfam PF05524 PEP-utilising enzyme, N-terminal 172 294 5.3E-23 T 11-11-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 612 627 1.2E-22 T 11-11-2016 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 629 644 1.2E-22 T 11-11-2016 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 478 1.2E-22 T 11-11-2016 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 665 677 1.2E-22 T 11-11-2016 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 Pfam PF01590 GAF domain 20 151 1.9E-14 T 11-11-2016 IPR003018 GAF domain GO:0005515 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 424 706 9.1E-92 T 11-11-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 Gene3D G3DSA:1.10.274.10 200 301 7.2E-31 T 11-11-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 Gene3D G3DSA:3.50.30.10 302 418 1.5E-29 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 Gene3D G3DSA:3.30.450.40 1 166 4.8E-46 T 11-11-2016 IPR029016 GAF domain-like vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 Gene3D G3DSA:3.20.20.60 421 736 3.2E-94 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 351 362 - T 11-11-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 SMART SM00065 17 163 1.3E-21 T 11-11-2016 IPR003018 GAF domain GO:0005515 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 SUPERFAMILY SSF52009 293 413 2.09E-26 T 11-11-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 vm_RS11820 66be4b18fc926b8aa3e2b3b157569e3f 748 SUPERFAMILY SSF51621 419 714 1.1E-95 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS01310 e5e973b1b4cfc2bef52e2a2124506b8e 76 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 3 74 3.8E-17 T 11-11-2016 IPR012783 Zinc finger, C4 DksA/TraR-type vm_RS01310 e5e973b1b4cfc2bef52e2a2124506b8e 76 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 43 74 3.5E-10 T 11-11-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 vm_RS01310 e5e973b1b4cfc2bef52e2a2124506b8e 76 SUPERFAMILY SSF57716 44 74 5.13E-6 T 11-11-2016 vm_RS11020 e5e973b1b4cfc2bef52e2a2124506b8e 76 TIGRFAM TIGR02419 C4_traR_proteo: phage/conjugal plasmid C-4 type zinc finger protein, TraR family 3 74 3.8E-17 T 11-11-2016 IPR012783 Zinc finger, C4 DksA/TraR-type vm_RS11020 e5e973b1b4cfc2bef52e2a2124506b8e 76 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 43 74 3.5E-10 T 11-11-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 vm_RS11020 e5e973b1b4cfc2bef52e2a2124506b8e 76 SUPERFAMILY SSF57716 44 74 5.13E-6 T 11-11-2016 vm_RS04960 d887f3162d2f7a51c79357559bad24c4 306 SUPERFAMILY SSF159501 24 275 4.97E-73 T 11-11-2016 vm_RS04960 d887f3162d2f7a51c79357559bad24c4 306 PIRSF PIRSF020419 1 290 2.4E-107 T 11-11-2016 IPR016773 Ferric uptake regulator, CjrA, predicted vm_RS04960 d887f3162d2f7a51c79357559bad24c4 306 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 47 246 6.5E-58 T 11-11-2016 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN vm_RS11640 44732110b20fa13eaf460c0f353aacf8 240 Gene3D G3DSA:3.60.140.10 2 239 6.3E-96 T 11-11-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase vm_RS11640 44732110b20fa13eaf460c0f353aacf8 240 SUPERFAMILY SSF64438 2 239 9.34E-86 T 11-11-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic vm_RS11640 44732110b20fa13eaf460c0f353aacf8 240 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 17 237 1.8E-72 T 11-11-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase vm_RS11640 44732110b20fa13eaf460c0f353aacf8 240 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 24 238 3.0E-64 T 11-11-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase vm_RS09475 bf46f88434dcda40e7ae888ae1c00dda 276 Pfam PF02517 CAAX protease self-immunity 174 263 1.4E-17 T 11-11-2016 IPR003675 CAAX amino terminal protease GO:0016020 vm_RS08575 5aedf8ea1dcd22ffa9cd8390e47ef29b 461 PIRSF PIRSF000243 8 460 3.3E-127 T 11-11-2016 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 vm_RS08575 5aedf8ea1dcd22ffa9cd8390e47ef29b 461 Pfam PF02335 Cytochrome c552 27 456 5.6E-179 T 11-11-2016 IPR003321 Cytochrome c552 GO:0006807|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 vm_RS08575 5aedf8ea1dcd22ffa9cd8390e47ef29b 461 Gene3D G3DSA:1.20.140.10 297 430 2.6E-54 T 11-11-2016 vm_RS08575 5aedf8ea1dcd22ffa9cd8390e47ef29b 461 Gene3D G3DSA:1.10.710.10 33 296 1.9E-18 T 11-11-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 vm_RS08575 5aedf8ea1dcd22ffa9cd8390e47ef29b 461 TIGRFAM TIGR03152 cyto_c552_HCOOH: formate-dependent cytochrome c nitrite reductase, c552 subunit 23 459 7.5E-245 T 11-11-2016 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 vm_RS08575 5aedf8ea1dcd22ffa9cd8390e47ef29b 461 Hamap MF_01182 Cytochrome c-552 [nrfA]. 1 461 56.836 T 11-11-2016 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit GO:0005509|GO:0006807|GO:0020037|GO:0042279|GO:0042597|GO:0055114 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674 vm_RS08575 5aedf8ea1dcd22ffa9cd8390e47ef29b 461 SUPERFAMILY SSF48695 23 457 4.33E-161 T 11-11-2016 IPR011031 Multihaem cytochrome vm_RS14185 b236a564574a7bead075af2ecc9c266c 332 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 65 315 8.1E-33 T 11-11-2016 IPR001761 Periplasmic binding protein/LacI sugar binding domain vm_RS14185 b236a564574a7bead075af2ecc9c266c 332 Gene3D G3DSA:3.40.50.2300 175 332 8.9E-46 T 11-11-2016 vm_RS14185 b236a564574a7bead075af2ecc9c266c 332 ProSitePatterns PS00356 LacI-type HTH domain signature. 9 27 - T 11-11-2016 vm_RS14185 b236a564574a7bead075af2ecc9c266c 332 SUPERFAMILY SSF53822 64 319 1.53E-58 T 11-11-2016 IPR028082 Periplasmic binding protein-like I vm_RS14185 b236a564574a7bead075af2ecc9c266c 332 Gene3D G3DSA:1.10.260.40 5 61 2.8E-17 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS14185 b236a564574a7bead075af2ecc9c266c 332 SUPERFAMILY SSF47413 6 64 2.35E-13 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS14185 b236a564574a7bead075af2ecc9c266c 332 SMART SM00354 6 76 3.8E-25 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS14185 b236a564574a7bead075af2ecc9c266c 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 8 53 1.8E-15 T 11-11-2016 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 vm_RS14185 b236a564574a7bead075af2ecc9c266c 332 Gene3D G3DSA:3.40.50.2300 63 174 8.8E-39 T 11-11-2016 vm_RS10040 d330d238cf618ed1e7a7b5b559057820 335 Gene3D G3DSA:3.40.50.410 96 283 8.1E-24 T 11-11-2016 IPR002035 von Willebrand factor, type A vm_RS10040 d330d238cf618ed1e7a7b5b559057820 335 SUPERFAMILY SSF53300 94 284 8.16E-33 T 11-11-2016 IPR002035 von Willebrand factor, type A vm_RS10040 d330d238cf618ed1e7a7b5b559057820 335 Pfam PF00092 von Willebrand factor type A domain 97 264 2.3E-22 T 11-11-2016 IPR002035 von Willebrand factor, type A vm_RS10040 d330d238cf618ed1e7a7b5b559057820 335 SMART SM00327 95 288 1.6E-18 T 11-11-2016 IPR002035 von Willebrand factor, type A vm_RS08470 9c9eeedd7cf88ccb8d06b879fe42e2e2 218 SMART SM00849 14 195 4.8E-39 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS08470 9c9eeedd7cf88ccb8d06b879fe42e2e2 218 Pfam PF00753 Metallo-beta-lactamase superfamily 12 195 3.0E-29 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS08470 9c9eeedd7cf88ccb8d06b879fe42e2e2 218 Gene3D G3DSA:3.60.15.10 3 213 1.8E-58 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS08470 9c9eeedd7cf88ccb8d06b879fe42e2e2 218 SUPERFAMILY SSF56281 4 211 1.62E-55 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS11715 c4d72503ef5971b21d8cc15af699e05d 237 Pfam PF04397 LytTr DNA-binding domain 142 234 9.0E-26 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 vm_RS11715 c4d72503ef5971b21d8cc15af699e05d 237 Gene3D G3DSA:2.20.25.10 215 236 3.8E-7 T 11-11-2016 vm_RS11715 c4d72503ef5971b21d8cc15af699e05d 237 SMART SM00850 141 235 3.3E-30 T 11-11-2016 IPR007492 LytTR DNA-binding domain GO:0003677 vm_RS11715 c4d72503ef5971b21d8cc15af699e05d 237 Gene3D G3DSA:2.40.50.40 133 197 1.5E-11 T 11-11-2016 vm_RS11715 c4d72503ef5971b21d8cc15af699e05d 237 Gene3D G3DSA:3.40.50.2300 1 122 1.4E-32 T 11-11-2016 vm_RS11715 c4d72503ef5971b21d8cc15af699e05d 237 SMART SM00448 2 112 7.2E-27 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS11715 c4d72503ef5971b21d8cc15af699e05d 237 Pfam PF00072 Response regulator receiver domain 5 112 6.6E-24 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS11715 c4d72503ef5971b21d8cc15af699e05d 237 SUPERFAMILY SSF52172 1 123 6.97E-32 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS11175 b201729a213bf9833b92553a5b79f3b2 1098 Pfam PF04851 Type III restriction enzyme, res subunit 292 490 2.0E-13 T 11-11-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 vm_RS11175 b201729a213bf9833b92553a5b79f3b2 1098 SUPERFAMILY SSF52540 240 537 1.01E-23 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11175 b201729a213bf9833b92553a5b79f3b2 1098 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 137 759 2.1E-128 T 11-11-2016 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 vm_RS11175 b201729a213bf9833b92553a5b79f3b2 1098 Pfam PF11867 Domain of unknown function (DUF3387) 757 1092 1.0E-96 T 11-11-2016 IPR021810 Protein of unknown function DUF3387 vm_RS11175 b201729a213bf9833b92553a5b79f3b2 1098 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 5 231 9.0E-37 T 11-11-2016 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 vm_RS11175 b201729a213bf9833b92553a5b79f3b2 1098 Gene3D G3DSA:3.40.50.300 655 738 2.5E-5 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11175 b201729a213bf9833b92553a5b79f3b2 1098 SMART SM00487 285 517 1.4E-8 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS11175 b201729a213bf9833b92553a5b79f3b2 1098 Gene3D G3DSA:3.40.50.300 322 493 4.7E-12 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11175 b201729a213bf9833b92553a5b79f3b2 1098 SUPERFAMILY SSF52540 649 768 1.71E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11175 b201729a213bf9833b92553a5b79f3b2 1098 SUPERFAMILY SSF52540 332 387 1.71E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11165 4005afb120e8bdeb8415aafe259fbfd3 287 Gene3D G3DSA:1.10.150.130 5 80 1.1E-11 T 11-11-2016 IPR023109 Integrase/recombinase, N-terminal vm_RS11165 4005afb120e8bdeb8415aafe259fbfd3 287 SUPERFAMILY SSF56349 3 260 5.89E-55 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS11165 4005afb120e8bdeb8415aafe259fbfd3 287 Pfam PF00589 Phage integrase family 88 250 1.1E-26 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS11165 4005afb120e8bdeb8415aafe259fbfd3 287 Gene3D G3DSA:1.10.443.10 88 256 5.7E-24 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS11060 67c745c560921f73f91a6e58e5b96342 170 Pfam PF16532 Sf6-type phage tail needle knob or tip of some Caudovirales 14 158 7.3E-33 T 11-11-2016 IPR032395 Sf6-type phage tail needle knob vm_RS10195 22e2d71867a96514847256eb4908c8d7 493 SUPERFAMILY SSF103473 8 202 3.31E-23 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS10195 22e2d71867a96514847256eb4908c8d7 493 SUPERFAMILY SSF103473 246 477 3.31E-23 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS10195 22e2d71867a96514847256eb4908c8d7 493 Pfam PF00854 POT family 79 442 6.4E-81 T 11-11-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: R-HSA-427975 vm_RS10195 22e2d71867a96514847256eb4908c8d7 493 Gene3D G3DSA:1.20.1250.20 13 197 7.1E-20 T 11-11-2016 vm_RS10195 22e2d71867a96514847256eb4908c8d7 493 Gene3D G3DSA:1.20.1250.20 270 460 9.5E-8 T 11-11-2016 vm_RS10195 22e2d71867a96514847256eb4908c8d7 493 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 6 480 7.2E-127 T 11-11-2016 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 vm_RS10195 22e2d71867a96514847256eb4908c8d7 493 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 147 159 - T 11-11-2016 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 vm_RS10195 22e2d71867a96514847256eb4908c8d7 493 ProSitePatterns PS01022 PTR2 family proton/oligopeptide symporters signature 1. 67 91 - T 11-11-2016 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: R-HSA-427975 vm_RS01290 1e35a843a58dcdfa751b7a5bbe4f2acb 138 SUPERFAMILY SSF46689 36 128 1.31E-21 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS01290 1e35a843a58dcdfa751b7a5bbe4f2acb 138 Pfam PF08765 Mor transcription activator family 36 137 4.7E-26 T 11-11-2016 IPR014875 Mor transcription activator vm_RS01290 1e35a843a58dcdfa751b7a5bbe4f2acb 138 Gene3D G3DSA:1.10.10.60 82 138 2.6E-23 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS01290 1e35a843a58dcdfa751b7a5bbe4f2acb 138 Gene3D G3DSA:1.10.10.60 36 81 2.3E-25 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS11000 1e35a843a58dcdfa751b7a5bbe4f2acb 138 SUPERFAMILY SSF46689 36 128 1.31E-21 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS11000 1e35a843a58dcdfa751b7a5bbe4f2acb 138 Pfam PF08765 Mor transcription activator family 36 137 4.7E-26 T 11-11-2016 IPR014875 Mor transcription activator vm_RS11000 1e35a843a58dcdfa751b7a5bbe4f2acb 138 Gene3D G3DSA:1.10.10.60 82 138 2.6E-23 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS11000 1e35a843a58dcdfa751b7a5bbe4f2acb 138 Gene3D G3DSA:1.10.10.60 36 81 2.3E-25 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS11370 e492ba5b25834d17d1468e4651c02198 204 PIRSF PIRSF006170 1 204 2.4E-54 T 11-11-2016 IPR026039 Uncharacterised protein family UPF0070 vm_RS11370 e492ba5b25834d17d1468e4651c02198 204 SUPERFAMILY SSF48452 90 189 2.06E-7 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS11370 e492ba5b25834d17d1468e4651c02198 204 Gene3D G3DSA:1.25.40.10 71 188 1.8E-7 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS11370 e492ba5b25834d17d1468e4651c02198 204 Pfam PF09976 Tetratricopeptide repeat-like domain 15 204 2.9E-57 T 11-11-2016 IPR018704 Tetratricopeptide repeat-like domain Reactome: R-HSA-192823|Reactome: R-HSA-381038 vm_RS08045 52b53c9ff1cd8c6c4f7c99b902944574 223 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 19 216 2.0E-44 T 11-11-2016 vm_RS11665 ba7c3e3a25bdad83e11c192479a4d8f6 346 Gene3D G3DSA:3.40.190.10 22 133 3.1E-13 T 11-11-2016 vm_RS11665 ba7c3e3a25bdad83e11c192479a4d8f6 346 Gene3D G3DSA:3.40.190.10 134 290 6.5E-28 T 11-11-2016 vm_RS11665 ba7c3e3a25bdad83e11c192479a4d8f6 346 Pfam PF13416 Bacterial extracellular solute-binding protein 36 295 1.8E-19 T 11-11-2016 vm_RS11665 ba7c3e3a25bdad83e11c192479a4d8f6 346 SUPERFAMILY SSF53850 22 336 3.16E-54 T 11-11-2016 vm_RS11665 ba7c3e3a25bdad83e11c192479a4d8f6 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 156 175 2.7E-16 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS11665 ba7c3e3a25bdad83e11c192479a4d8f6 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 286 312 2.7E-16 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS11665 ba7c3e3a25bdad83e11c192479a4d8f6 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 26 42 2.7E-16 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS11665 ba7c3e3a25bdad83e11c192479a4d8f6 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 42 63 2.7E-16 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS11665 ba7c3e3a25bdad83e11c192479a4d8f6 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 111 127 2.7E-16 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS11665 ba7c3e3a25bdad83e11c192479a4d8f6 346 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 241 260 2.7E-16 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS06400 19371555ecae42fa70ce24777dab466b 919 Pfam PF00675 Insulinase (Peptidase family M16) 49 185 5.0E-28 T 11-11-2016 IPR011765 Peptidase M16, N-terminal vm_RS06400 19371555ecae42fa70ce24777dab466b 919 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 62 85 - T 11-11-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 vm_RS06400 19371555ecae42fa70ce24777dab466b 919 Gene3D G3DSA:3.30.830.10 308 447 2.8E-5 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 vm_RS06400 19371555ecae42fa70ce24777dab466b 919 Gene3D G3DSA:3.30.830.10 764 906 3.0E-9 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 vm_RS06400 19371555ecae42fa70ce24777dab466b 919 SUPERFAMILY SSF63411 500 716 1.12E-23 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS06400 19371555ecae42fa70ce24777dab466b 919 Pfam PF05193 Peptidase M16 inactive domain 201 374 2.4E-17 T 11-11-2016 IPR007863 Peptidase M16, C-terminal vm_RS06400 19371555ecae42fa70ce24777dab466b 919 Pfam PF05193 Peptidase M16 inactive domain 672 847 3.6E-9 T 11-11-2016 IPR007863 Peptidase M16, C-terminal vm_RS06400 19371555ecae42fa70ce24777dab466b 919 Gene3D G3DSA:3.30.830.10 21 249 4.4E-48 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 vm_RS06400 19371555ecae42fa70ce24777dab466b 919 SUPERFAMILY SSF63411 21 250 2.62E-48 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS06400 19371555ecae42fa70ce24777dab466b 919 Gene3D G3DSA:3.30.830.10 505 716 1.2E-16 T 11-11-2016 IPR011237 Peptidase M16 domain GO:0046872 vm_RS06400 19371555ecae42fa70ce24777dab466b 919 SUPERFAMILY SSF63411 758 906 6.98E-15 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS06400 19371555ecae42fa70ce24777dab466b 919 SUPERFAMILY SSF63411 295 460 1.61E-11 T 11-11-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 vm_RS04475 ca1c044938b33beaf18151e16da7bf03 252 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 9 238 1.1E-59 T 11-11-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 vm_RS04475 ca1c044938b33beaf18151e16da7bf03 252 Gene3D G3DSA:3.40.1390.30 2 107 1.0E-37 T 11-11-2016 vm_RS04475 ca1c044938b33beaf18151e16da7bf03 252 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 1 251 1.4E-66 T 11-11-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 vm_RS04475 ca1c044938b33beaf18151e16da7bf03 252 SUPERFAMILY SSF102705 1 251 1.31E-82 T 11-11-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 vm_RS04475 ca1c044938b33beaf18151e16da7bf03 252 Gene3D G3DSA:3.40.1390.30 108 219 3.2E-28 T 11-11-2016 vm_RS09405 d1053fb4aa9533c76b4dbed7f6f6ac67 535 SMART SM00387 420 531 7.4E-16 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09405 d1053fb4aa9533c76b4dbed7f6f6ac67 535 SMART SM00304 174 226 1.5E-6 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS09405 d1053fb4aa9533c76b4dbed7f6f6ac67 535 SUPERFAMILY SSF55874 391 532 6.94E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09405 d1053fb4aa9533c76b4dbed7f6f6ac67 535 Pfam PF00672 HAMP domain 159 223 3.3E-10 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS09405 d1053fb4aa9533c76b4dbed7f6f6ac67 535 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 425 530 3.4E-14 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09405 d1053fb4aa9533c76b4dbed7f6f6ac67 535 SUPERFAMILY SSF158472 176 223 6.93E-6 T 11-11-2016 vm_RS09405 d1053fb4aa9533c76b4dbed7f6f6ac67 535 Gene3D G3DSA:3.30.565.10 366 381 2.5E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09405 d1053fb4aa9533c76b4dbed7f6f6ac67 535 Gene3D G3DSA:3.30.565.10 418 531 2.5E-27 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS09405 d1053fb4aa9533c76b4dbed7f6f6ac67 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 515 528 3.2E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09405 d1053fb4aa9533c76b4dbed7f6f6ac67 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 478 488 3.2E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09405 d1053fb4aa9533c76b4dbed7f6f6ac67 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 509 3.2E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS09405 d1053fb4aa9533c76b4dbed7f6f6ac67 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 474 3.2E-12 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS07450 deef2ad54cd424925f876737bf5ce358 207 Hamap MF_00749 RNA chaperone ProQ [proQ]. 3 207 29.808 T 11-11-2016 IPR023529 RNA chaperone ProQ GO:0003723|GO:0010608|GO:0033592|GO:0034057 vm_RS07450 deef2ad54cd424925f876737bf5ce358 207 SMART SM00945 5 119 8.4E-62 T 11-11-2016 IPR016103 ProQ/FinO domain vm_RS07450 deef2ad54cd424925f876737bf5ce358 207 SUPERFAMILY SSF48657 5 118 3.14E-39 T 11-11-2016 IPR016103 ProQ/FinO domain vm_RS07450 deef2ad54cd424925f876737bf5ce358 207 Pfam PF04352 ProQ/FINO family 8 115 3.1E-42 T 11-11-2016 IPR016103 ProQ/FinO domain vm_RS07450 deef2ad54cd424925f876737bf5ce358 207 Gene3D G3DSA:1.10.1710.10 3 117 8.5E-37 T 11-11-2016 IPR016103 ProQ/FinO domain vm_RS09105 1f6b433e8545d6964ddca229982a6a67 548 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 63 442 2.3E-53 T 11-11-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 vm_RS09105 1f6b433e8545d6964ddca229982a6a67 548 Gene3D G3DSA:3.40.640.10 116 395 4.0E-83 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS09105 1f6b433e8545d6964ddca229982a6a67 548 SUPERFAMILY SSF53383 26 530 1.44E-113 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS09105 1f6b433e8545d6964ddca229982a6a67 548 TIGRFAM TIGR03799 NOD_PanD_pyr: putative pyridoxal-dependent aspartate 1-decarboxylase 7 527 3.1E-290 T 11-11-2016 IPR022517 Aspartate 1-decarboxylase, pyridoxal-dependent vm_RS09105 1f6b433e8545d6964ddca229982a6a67 548 Gene3D G3DSA:3.90.1150.10 396 530 3.2E-38 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS00530 f4c64d5407c88f36609e5241f7fa30d4 162 Pfam PF10675 Protein of unknown function (DUF2489) 14 146 4.5E-46 T 11-11-2016 IPR019617 Domain of unknown function DUF2489 vm_RS09865 dbdb65b9b1a33e0a3cd56a7513ad10ac 291 Pfam PF03466 LysR substrate binding domain 88 286 2.3E-41 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS09865 dbdb65b9b1a33e0a3cd56a7513ad10ac 291 SUPERFAMILY SSF46785 1 84 6.86E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09865 dbdb65b9b1a33e0a3cd56a7513ad10ac 291 Gene3D G3DSA:1.10.10.10 1 82 2.3E-20 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS09865 dbdb65b9b1a33e0a3cd56a7513ad10ac 291 Gene3D G3DSA:3.40.190.10 177 257 1.0E-16 T 11-11-2016 vm_RS09865 dbdb65b9b1a33e0a3cd56a7513ad10ac 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.0E-12 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS09865 dbdb65b9b1a33e0a3cd56a7513ad10ac 291 Gene3D G3DSA:3.40.190.10 91 176 1.3E-23 T 11-11-2016 vm_RS09865 dbdb65b9b1a33e0a3cd56a7513ad10ac 291 SUPERFAMILY SSF53850 88 288 3.26E-39 T 11-11-2016 vm_RS03275 ca57d48f7278daef4e6897c4ec59c441 114 Gene3D G3DSA:2.40.50.140 8 113 1.1E-30 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS03275 ca57d48f7278daef4e6897c4ec59c441 114 Pfam PF01588 Putative tRNA binding domain 18 111 1.6E-21 T 11-11-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 vm_RS03275 ca57d48f7278daef4e6897c4ec59c441 114 SUPERFAMILY SSF50249 11 113 1.62E-25 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 PIRSF PIRSF003101 1 420 2.0E-146 T 11-11-2016 IPR020823 Cell division protein FtsA GO:0007049 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 SMART SM00842 10 196 1.2E-96 T 11-11-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 9 385 4.3E-151 T 11-11-2016 IPR020823 Cell division protein FtsA GO:0007049 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 Pfam PF02491 SHS2 domain inserted in FTSA 85 162 1.7E-28 T 11-11-2016 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0007049 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 Gene3D G3DSA:3.30.420.40 298 359 5.4E-26 T 11-11-2016 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 Gene3D G3DSA:3.30.420.40 209 234 5.4E-26 T 11-11-2016 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 Gene3D G3DSA:3.90.640.10 235 297 2.3E-19 T 11-11-2016 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 Gene3D G3DSA:3.30.1490.110 100 166 1.6E-13 T 11-11-2016 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 Hamap MF_02033 Cell division protein FtsA [ftsA]. 6 420 29.102 T 11-11-2016 IPR020823 Cell division protein FtsA GO:0007049 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 SUPERFAMILY SSF53067 8 221 4.4E-60 T 11-11-2016 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 Gene3D G3DSA:3.30.420.40 3 83 1.1E-22 T 11-11-2016 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 Gene3D G3DSA:3.30.420.40 168 208 1.1E-22 T 11-11-2016 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 Pfam PF14450 Cell division protein FtsA 207 381 9.5E-24 T 11-11-2016 vm_RS02990 d77019630b785cd8b2db34a38f5c3add 420 SUPERFAMILY SSF53067 198 384 4.32E-44 T 11-11-2016 vm_RS03285 ca848018599266a56e8339203f72d99e 313 Gene3D G3DSA:1.20.58.340 136 225 1.2E-4 T 11-11-2016 vm_RS03285 ca848018599266a56e8339203f72d99e 313 SUPERFAMILY SSF144083 244 306 2.62E-13 T 11-11-2016 vm_RS03285 ca848018599266a56e8339203f72d99e 313 Gene3D G3DSA:1.20.58.340 241 308 9.1E-17 T 11-11-2016 vm_RS03285 ca848018599266a56e8339203f72d99e 313 SUPERFAMILY SSF143865 24 230 3.27E-30 T 11-11-2016 vm_RS03285 ca848018599266a56e8339203f72d99e 313 Pfam PF01544 CorA-like Mg2+ transporter protein 29 305 2.0E-55 T 11-11-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 vm_RS11135 99916d6d9d65b35cf18f92df9b5d3af2 204 Pfam PF06890 Bacteriophage Mu Gp45 protein 25 190 9.2E-38 T 11-11-2016 IPR014462 Phage-associated protein Gp45 vm_RS11135 99916d6d9d65b35cf18f92df9b5d3af2 204 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 17 195 4.2E-26 T 11-11-2016 IPR013046 Phage baseplate assembly protein V/Gp45 vm_RS11135 99916d6d9d65b35cf18f92df9b5d3af2 204 PIRSF PIRSF012337 4 203 1.2E-56 T 11-11-2016 IPR014462 Phage-associated protein Gp45 vm_RS09140 7677f9232a593e7c18a1aa734f61b7e0 106 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 23 102 3.0E-33 T 11-11-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 Reactome: R-HSA-983168 vm_RS09140 7677f9232a593e7c18a1aa734f61b7e0 106 SUPERFAMILY SSF54736 22 105 4.29E-32 T 11-11-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like vm_RS09140 7677f9232a593e7c18a1aa734f61b7e0 106 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 9 101 27.773 T 11-11-2016 IPR022935 ATP-dependent Clp protease adaptor protein ClpS vm_RS09140 7677f9232a593e7c18a1aa734f61b7e0 106 Gene3D G3DSA:3.30.1390.10 4 106 4.5E-44 T 11-11-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like vm_RS05775 0f0500967b670ffdadc62ae4cc920de9 706 SMART SM00283 443 704 1.4E-62 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS05775 0f0500967b670ffdadc62ae4cc920de9 706 SMART SM00304 374 428 1.1E-13 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS05775 0f0500967b670ffdadc62ae4cc920de9 706 Gene3D G3DSA:1.10.287.950 458 674 3.9E-49 T 11-11-2016 vm_RS05775 0f0500967b670ffdadc62ae4cc920de9 706 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 497 703 7.9E-42 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS05775 0f0500967b670ffdadc62ae4cc920de9 706 Gene3D G3DSA:3.30.450.20 212 339 6.8E-6 T 11-11-2016 vm_RS05775 0f0500967b670ffdadc62ae4cc920de9 706 SUPERFAMILY SSF58104 396 705 2.62E-69 T 11-11-2016 vm_RS05775 0f0500967b670ffdadc62ae4cc920de9 706 Pfam PF00672 HAMP domain 355 424 3.4E-15 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS04280 2f8b04505ca7f96271b0358faf9c3368 103 Pfam PF02049 Flagellar hook-basal body complex protein FliE 18 103 2.8E-30 T 11-11-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 vm_RS04280 2f8b04505ca7f96271b0358faf9c3368 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 67 83 5.5E-13 T 11-11-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 vm_RS04280 2f8b04505ca7f96271b0358faf9c3368 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 32 48 5.5E-13 T 11-11-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 vm_RS04280 2f8b04505ca7f96271b0358faf9c3368 103 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 88 101 5.5E-13 T 11-11-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 vm_RS04280 2f8b04505ca7f96271b0358faf9c3368 103 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 6 102 7.5E-20 T 11-11-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 vm_RS04280 2f8b04505ca7f96271b0358faf9c3368 103 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 1 103 16.509 T 11-11-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 vm_RS14210 aa34bb7f603be4b8b94eafb5867ee418 680 Gene3D G3DSA:2.40.170.20 161 680 4.7E-138 T 11-11-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 vm_RS14210 aa34bb7f603be4b8b94eafb5867ee418 680 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 663 680 - T 11-11-2016 IPR010917 TonB-dependent receptor, conserved site vm_RS14210 aa34bb7f603be4b8b94eafb5867ee418 680 SUPERFAMILY SSF56935 20 680 2.75E-126 T 11-11-2016 vm_RS14210 aa34bb7f603be4b8b94eafb5867ee418 680 Pfam PF07715 TonB-dependent Receptor Plug Domain 53 146 6.2E-21 T 11-11-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 vm_RS14210 aa34bb7f603be4b8b94eafb5867ee418 680 Pfam PF00593 TonB dependent receptor 444 679 7.9E-33 T 11-11-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 vm_RS14210 aa34bb7f603be4b8b94eafb5867ee418 680 Gene3D G3DSA:2.170.130.10 39 152 1.7E-31 T 11-11-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 vm_RS14210 aa34bb7f603be4b8b94eafb5867ee418 680 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 54 680 2.1E-104 T 11-11-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 vm_RS04630 dc9c97de02eadd1efca4013943e9d785 258 SUPERFAMILY SSF52540 1 252 9.77E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04630 dc9c97de02eadd1efca4013943e9d785 258 Gene3D G3DSA:3.40.50.300 3 248 6.1E-57 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04630 dc9c97de02eadd1efca4013943e9d785 258 Pfam PF13614 AAA domain 4 180 1.7E-49 T 11-11-2016 IPR025669 AAA domain vm_RS06095 1fde590cafa8507972d671d7d20a5470 547 SMART SM00710 170 212 1100.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat vm_RS06095 1fde590cafa8507972d671d7d20a5470 547 SMART SM00710 266 288 130.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat vm_RS06095 1fde590cafa8507972d671d7d20a5470 547 SMART SM00710 221 243 700.0 T 11-11-2016 IPR006626 Parallel beta-helix repeat vm_RS06095 1fde590cafa8507972d671d7d20a5470 547 Pfam PF13229 Right handed beta helix region 267 412 1.9E-6 T 11-11-2016 vm_RS06095 1fde590cafa8507972d671d7d20a5470 547 SUPERFAMILY SSF51126 47 422 2.88E-24 T 11-11-2016 IPR011050 Pectin lyase fold/virulence factor vm_RS06095 1fde590cafa8507972d671d7d20a5470 547 SUPERFAMILY SSF51126 481 521 2.88E-24 T 11-11-2016 IPR011050 Pectin lyase fold/virulence factor vm_RS05045 6eeb57706d5d953c889a73aa9596e016 284 Gene3D G3DSA:3.40.50.1820 9 281 2.7E-40 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS05045 6eeb57706d5d953c889a73aa9596e016 284 PRINTS PR00412 Epoxide hydrolase signature 258 280 9.1E-6 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS05045 6eeb57706d5d953c889a73aa9596e016 284 PRINTS PR00412 Epoxide hydrolase signature 100 113 9.1E-6 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS05045 6eeb57706d5d953c889a73aa9596e016 284 PRINTS PR00412 Epoxide hydrolase signature 114 127 9.1E-6 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS05045 6eeb57706d5d953c889a73aa9596e016 284 PRINTS PR00412 Epoxide hydrolase signature 56 71 9.1E-6 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS05045 6eeb57706d5d953c889a73aa9596e016 284 PRINTS PR00412 Epoxide hydrolase signature 34 52 9.1E-6 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS05045 6eeb57706d5d953c889a73aa9596e016 284 Pfam PF00561 alpha/beta hydrolase fold 29 147 4.7E-18 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 vm_RS05045 6eeb57706d5d953c889a73aa9596e016 284 SUPERFAMILY SSF53474 9 282 1.25E-47 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS02085 53e2a444852f855428604a46d2795594 128 Gene3D G3DSA:3.90.1030.10 1 117 1.4E-51 T 11-11-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02085 53e2a444852f855428604a46d2795594 128 Pfam PF01196 Ribosomal protein L17 20 116 6.8E-35 T 11-11-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02085 53e2a444852f855428604a46d2795594 128 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 1.4E-49 T 11-11-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02085 53e2a444852f855428604a46d2795594 128 SUPERFAMILY SSF64263 1 119 3.4E-51 T 11-11-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02085 53e2a444852f855428604a46d2795594 128 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 26.737 T 11-11-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS02085 53e2a444852f855428604a46d2795594 128 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 11-11-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS09950 ed8f0f7f31147a0552a3afcf1fdec406 138 Pfam PF00571 CBS domain 73 127 1.0E-13 T 11-11-2016 IPR000644 CBS domain vm_RS09950 ed8f0f7f31147a0552a3afcf1fdec406 138 Pfam PF00571 CBS domain 6 61 2.7E-7 T 11-11-2016 IPR000644 CBS domain vm_RS09950 ed8f0f7f31147a0552a3afcf1fdec406 138 Gene3D G3DSA:3.10.580.10 1 132 8.9E-31 T 11-11-2016 vm_RS09950 ed8f0f7f31147a0552a3afcf1fdec406 138 SMART SM00116 80 127 4.8E-10 T 11-11-2016 IPR000644 CBS domain vm_RS09950 ed8f0f7f31147a0552a3afcf1fdec406 138 SMART SM00116 13 61 0.011 T 11-11-2016 IPR000644 CBS domain vm_RS09950 ed8f0f7f31147a0552a3afcf1fdec406 138 SUPERFAMILY SSF54631 1 126 1.39E-32 T 11-11-2016 vm_RS13915 a12f3288594448026514cf87bb7e9bc4 285 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 9 285 49.164 T 11-11-2016 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 vm_RS13915 a12f3288594448026514cf87bb7e9bc4 285 Pfam PF02666 Phosphatidylserine decarboxylase 62 280 3.3E-59 T 11-11-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 vm_RS13915 a12f3288594448026514cf87bb7e9bc4 285 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 48 283 2.1E-87 T 11-11-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 vm_RS04660 7a395a192962da7c586531faaed0a3e0 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 204 228 3.3E-64 T 11-11-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04660 7a395a192962da7c586531faaed0a3e0 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 62 82 3.3E-64 T 11-11-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04660 7a395a192962da7c586531faaed0a3e0 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 45 62 3.3E-64 T 11-11-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04660 7a395a192962da7c586531faaed0a3e0 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 121 141 3.3E-64 T 11-11-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04660 7a395a192962da7c586531faaed0a3e0 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 100 120 3.3E-64 T 11-11-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04660 7a395a192962da7c586531faaed0a3e0 250 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 156 182 3.3E-64 T 11-11-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04660 7a395a192962da7c586531faaed0a3e0 250 Pfam PF01578 Cytochrome C assembly protein 28 184 2.8E-30 T 11-11-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 vm_RS04660 7a395a192962da7c586531faaed0a3e0 250 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 45 228 1.4E-84 T 11-11-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04740 2402219db3077d3c28e2bc0d448384b9 240 Gene3D G3DSA:3.40.50.720 2 237 5.1E-35 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04740 2402219db3077d3c28e2bc0d448384b9 240 Pfam PF00106 short chain dehydrogenase 3 189 2.0E-28 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04740 2402219db3077d3c28e2bc0d448384b9 240 SUPERFAMILY SSF51735 3 220 6.76E-34 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS04740 2402219db3077d3c28e2bc0d448384b9 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 4.5E-11 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04740 2402219db3077d3c28e2bc0d448384b9 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 4.5E-11 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS04740 2402219db3077d3c28e2bc0d448384b9 240 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 4.5E-11 T 11-11-2016 IPR002347 Short-chain dehydrogenase/reductase SDR vm_RS10715 36c874fbe021442e2ea83d3cc39a1af0 345 Pfam PF12069 Protein of unknown function (DUF3549) 3 340 2.3E-130 T 11-11-2016 IPR021936 Protein of unknown function DUF3549 vm_RS14875 d54489ade848ce71cb9f78d66f1553ea 257 SUPERFAMILY SSF52540 2 253 4.37E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14875 d54489ade848ce71cb9f78d66f1553ea 257 Pfam PF13614 AAA domain 2 178 1.9E-62 T 11-11-2016 IPR025669 AAA domain vm_RS14875 d54489ade848ce71cb9f78d66f1553ea 257 Gene3D G3DSA:3.40.50.300 3 254 9.9E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12765 91dae5c9bc3c7ec3fe19dcb2000ccb04 384 SUPERFAMILY SSF52440 18 120 9.21E-6 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS12765 91dae5c9bc3c7ec3fe19dcb2000ccb04 384 Gene3D G3DSA:3.30.1490.20 121 214 4.7E-9 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS12765 91dae5c9bc3c7ec3fe19dcb2000ccb04 384 Pfam PF07478 D-ala D-ala ligase C-terminus 136 355 9.6E-19 T 11-11-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS12765 91dae5c9bc3c7ec3fe19dcb2000ccb04 384 Gene3D G3DSA:3.30.470.20 215 355 6.0E-20 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS12765 91dae5c9bc3c7ec3fe19dcb2000ccb04 384 SUPERFAMILY SSF56059 128 326 1.04E-24 T 11-11-2016 vm_RS03085 ebfbc81dea9a5507c625f6e3f0bb897b 1514 SUPERFAMILY SSF69336 1235 1498 4.05E-94 T 11-11-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 vm_RS03085 ebfbc81dea9a5507c625f6e3f0bb897b 1514 Pfam PF01645 Conserved region in glutamate synthase 817 1187 8.8E-152 T 11-11-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 vm_RS03085 ebfbc81dea9a5507c625f6e3f0bb897b 1514 Pfam PF04898 Glutamate synthase central domain 472 756 5.5E-116 T 11-11-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 vm_RS03085 ebfbc81dea9a5507c625f6e3f0bb897b 1514 SUPERFAMILY SSF56235 21 447 5.1E-152 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS03085 ebfbc81dea9a5507c625f6e3f0bb897b 1514 Pfam PF01493 GXGXG motif 1267 1452 4.2E-82 T 11-11-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 vm_RS03085 ebfbc81dea9a5507c625f6e3f0bb897b 1514 Gene3D G3DSA:3.60.20.10 21 454 3.7E-183 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS03085 ebfbc81dea9a5507c625f6e3f0bb897b 1514 Pfam PF00310 Glutamine amidotransferases class-II 21 443 4.9E-186 T 11-11-2016 IPR017932 Glutamine amidotransferase type 2 domain vm_RS03085 ebfbc81dea9a5507c625f6e3f0bb897b 1514 SUPERFAMILY SSF51395 461 1220 2.24E-269 T 11-11-2016 vm_RS03085 ebfbc81dea9a5507c625f6e3f0bb897b 1514 Gene3D G3DSA:2.160.20.60 1241 1507 2.8E-106 T 11-11-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 vm_RS03085 ebfbc81dea9a5507c625f6e3f0bb897b 1514 Gene3D G3DSA:3.20.20.70 455 804 6.2E-109 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS03085 ebfbc81dea9a5507c625f6e3f0bb897b 1514 Gene3D G3DSA:3.20.20.70 861 1220 8.2E-181 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS06180 d182e950a39379b16eff4713ba42df54 346 Pfam PF13181 Tetratricopeptide repeat 281 308 0.026 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS06180 d182e950a39379b16eff4713ba42df54 346 Pfam PF13181 Tetratricopeptide repeat 196 214 0.12 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS06180 d182e950a39379b16eff4713ba42df54 346 SUPERFAMILY SSF48452 56 327 1.9E-27 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS06180 d182e950a39379b16eff4713ba42df54 346 Pfam PF13432 Tetratricopeptide repeat 91 148 7.6E-4 T 11-11-2016 vm_RS06180 d182e950a39379b16eff4713ba42df54 346 SMART SM00028 121 154 1.7 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS06180 d182e950a39379b16eff4713ba42df54 346 SMART SM00028 182 215 0.077 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS06180 d182e950a39379b16eff4713ba42df54 346 SMART SM00028 87 120 0.0076 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS06180 d182e950a39379b16eff4713ba42df54 346 SMART SM00028 280 313 2.7E-4 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS06180 d182e950a39379b16eff4713ba42df54 346 SMART SM00028 216 249 9.3E-5 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS06180 d182e950a39379b16eff4713ba42df54 346 Gene3D G3DSA:1.25.40.10 53 327 8.6E-40 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS06180 d182e950a39379b16eff4713ba42df54 346 Pfam PF07719 Tetratricopeptide repeat 218 249 2.8E-7 T 11-11-2016 IPR013105 Tetratricopeptide repeat 2 vm_RS12255 6b2ff26dc853ddb238accca74b6d7a84 203 Gene3D G3DSA:1.10.357.10 65 199 1.6E-14 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 vm_RS12255 6b2ff26dc853ddb238accca74b6d7a84 203 SUPERFAMILY SSF48498 94 198 4.14E-8 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal vm_RS12255 6b2ff26dc853ddb238accca74b6d7a84 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 67 6.8E-12 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS12255 6b2ff26dc853ddb238accca74b6d7a84 203 Gene3D G3DSA:1.10.10.60 8 64 1.2E-15 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS12255 6b2ff26dc853ddb238accca74b6d7a84 203 SUPERFAMILY SSF46689 9 85 1.75E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS12255 6b2ff26dc853ddb238accca74b6d7a84 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 1.0E-5 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS12255 6b2ff26dc853ddb238accca74b6d7a84 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 1.0E-5 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS02675 4f694cca4dcf0dea603f2ee910fbdded 126 Gene3D G3DSA:3.90.470.20 1 124 3.7E-42 T 11-11-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 vm_RS02675 4f694cca4dcf0dea603f2ee910fbdded 126 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 1 125 5.9E-33 T 11-11-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 vm_RS02675 4f694cca4dcf0dea603f2ee910fbdded 126 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 88 1.0E-35 T 11-11-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 vm_RS02675 4f694cca4dcf0dea603f2ee910fbdded 126 SUPERFAMILY SSF56214 1 124 5.62E-32 T 11-11-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 vm_RS02675 4f694cca4dcf0dea603f2ee910fbdded 126 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 125 26.755 T 11-11-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 vm_RS02675 4f694cca4dcf0dea603f2ee910fbdded 126 TIGRFAM TIGR00516 acpS: holo-[acyl-carrier-protein] synthase 1 125 3.0E-44 T 11-11-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 vm_RS02675 4f694cca4dcf0dea603f2ee910fbdded 126 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 120 1.4E-22 T 11-11-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|Reactome: R-HSA-199220 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 SUPERFAMILY SSF51604 144 428 4.53E-128 T 11-11-2016 IPR029065 Enolase C-terminal domain-like vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 SUPERFAMILY SSF54826 3 138 3.36E-56 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 429 1.0E-207 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 ProSitePatterns PS00164 Enolase signature. 340 353 - T 11-11-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 PIRSF PIRSF001400 1 431 6.2E-193 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 Gene3D G3DSA:3.20.20.120 128 429 8.2E-136 T 11-11-2016 IPR029065 Enolase C-terminal domain-like vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 Pfam PF00113 Enolase, C-terminal TIM barrel domain 145 430 5.5E-139 T 11-11-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 Gene3D G3DSA:3.30.390.10 3 127 3.9E-54 T 11-11-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 PRINTS PR00148 Enolase signature 369 386 4.0E-44 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 PRINTS PR00148 Enolase signature 317 328 4.0E-44 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 PRINTS PR00148 Enolase signature 165 178 4.0E-44 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 PRINTS PR00148 Enolase signature 340 354 4.0E-44 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 PRINTS PR00148 Enolase signature 37 51 4.0E-44 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 PRINTS PR00148 Enolase signature 107 123 4.0E-44 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 Hamap MF_00318 Enolase [eno]. 2 417 44.6 T 11-11-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 SMART SM01193 4 134 2.5E-92 T 11-11-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 SMART SM01192 143 431 5.8E-213 T 11-11-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS02725 caeb8e9d4285cb03358569066bc035b4 433 Pfam PF03952 Enolase, N-terminal domain 4 134 5.8E-58 T 11-11-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS01135 e1d9da715c0d411f12077225932437c0 240 SMART SM00862 156 232 2.3E-21 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS01135 e1d9da715c0d411f12077225932437c0 240 SUPERFAMILY SSF52172 3 127 2.28E-42 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS01135 e1d9da715c0d411f12077225932437c0 240 SUPERFAMILY SSF46894 132 234 2.35E-27 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS01135 e1d9da715c0d411f12077225932437c0 240 Pfam PF00072 Response regulator receiver domain 7 117 1.4E-29 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS01135 e1d9da715c0d411f12077225932437c0 240 Gene3D G3DSA:3.40.50.2300 4 124 7.5E-42 T 11-11-2016 vm_RS01135 e1d9da715c0d411f12077225932437c0 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 232 3.5E-22 T 11-11-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 vm_RS01135 e1d9da715c0d411f12077225932437c0 240 Gene3D G3DSA:1.10.10.10 133 235 1.7E-32 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS01135 e1d9da715c0d411f12077225932437c0 240 SMART SM00448 5 116 3.6E-45 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS15025 a850611b53fcc0d4cb0ea496ed590cf5 413 Pfam PF03090 Replicase family 41 168 7.9E-49 T 11-11-2016 IPR004322 Plasmid replicase, bacterial vm_RS15025 a850611b53fcc0d4cb0ea496ed590cf5 413 Pfam PF08708 Primase C terminal 1 (PriCT-1) 184 259 5.0E-18 T 11-11-2016 IPR014820 Primase, C-terminal 1 vm_RS10080 d13568e43a64858090f21339a63da43c 209 PIRSF PIRSF006091 1 206 2.3E-80 T 11-11-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 vm_RS10080 d13568e43a64858090f21339a63da43c 209 Hamap MF_00479 Electron transport complex subunit RsxG [rsxG]. 2 194 27.269 T 11-11-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 vm_RS10080 d13568e43a64858090f21339a63da43c 209 SMART SM00900 100 192 3.5E-35 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 vm_RS10080 d13568e43a64858090f21339a63da43c 209 Pfam PF04205 FMN-binding domain 100 189 6.3E-21 T 11-11-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 vm_RS10080 d13568e43a64858090f21339a63da43c 209 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 9 193 4.4E-72 T 11-11-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 vm_RS02530 9c783392d7fba3a6f91137bc0c70e25c 362 SUPERFAMILY SSF53756 11 320 3.14E-14 T 11-11-2016 vm_RS02530 9c783392d7fba3a6f91137bc0c70e25c 362 TIGRFAM TIGR00661 MJ1255: conserved hypothetical protein 2 311 1.4E-138 T 11-11-2016 IPR005262 Conserved hypothetical protein CHP00661 vm_RS02530 9c783392d7fba3a6f91137bc0c70e25c 362 Pfam PF13528 Glycosyl transferase family 1 2 300 2.0E-36 T 11-11-2016 vm_RS02530 9c783392d7fba3a6f91137bc0c70e25c 362 Gene3D G3DSA:3.40.50.2000 9 129 5.5E-4 T 11-11-2016 vm_RS02530 9c783392d7fba3a6f91137bc0c70e25c 362 Gene3D G3DSA:3.40.50.2000 218 301 1.7E-5 T 11-11-2016 vm_RS10095 ad9ed5d56ab8f9c72c64fd398f50381d 138 ProSitePatterns PS00934 Glyoxalase I signature 1. 8 29 - T 11-11-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 vm_RS10095 ad9ed5d56ab8f9c72c64fd398f50381d 138 Gene3D G3DSA:3.10.180.10 4 131 2.3E-47 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase vm_RS10095 ad9ed5d56ab8f9c72c64fd398f50381d 138 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 3 136 2.7E-67 T 11-11-2016 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 vm_RS10095 ad9ed5d56ab8f9c72c64fd398f50381d 138 SUPERFAMILY SSF54593 4 131 2.55E-35 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase vm_RS10095 ad9ed5d56ab8f9c72c64fd398f50381d 138 ProSitePatterns PS00935 Glyoxalase I signature 2. 72 84 - T 11-11-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|Reactome: R-HSA-70268 vm_RS10095 ad9ed5d56ab8f9c72c64fd398f50381d 138 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 126 8.6E-23 T 11-11-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain vm_RS05030 5fee7e63c9d54c9459bd040e00d5a895 232 SUPERFAMILY SSF53067 4 107 1.12E-31 T 11-11-2016 vm_RS05030 5fee7e63c9d54c9459bd040e00d5a895 232 SUPERFAMILY SSF53067 111 218 1.94E-23 T 11-11-2016 vm_RS05030 5fee7e63c9d54c9459bd040e00d5a895 232 Pfam PF00814 Glycoprotease family 30 152 5.9E-32 T 11-11-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 vm_RS05030 5fee7e63c9d54c9459bd040e00d5a895 232 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 220 1.4E-67 T 11-11-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 vm_RS05030 5fee7e63c9d54c9459bd040e00d5a895 232 Gene3D G3DSA:3.30.420.40 4 132 1.1E-45 T 11-11-2016 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 Pfam PF00459 Inositol monophosphatase family 2 259 8.4E-70 T 11-11-2016 IPR000760 Inositol monophosphatase GO:0046854 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 Gene3D G3DSA:3.30.540.10 2 151 5.8E-52 T 11-11-2016 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 SUPERFAMILY SSF56655 1 262 2.88E-84 T 11-11-2016 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 11-11-2016 IPR020583 Inositol monophosphatase, metal-binding site vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 208 232 2.9E-58 T 11-11-2016 IPR000760 Inositol monophosphatase GO:0046854 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 177 198 2.9E-58 T 11-11-2016 IPR000760 Inositol monophosphatase GO:0046854 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 2.9E-58 T 11-11-2016 IPR000760 Inositol monophosphatase GO:0046854 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 2.9E-58 T 11-11-2016 IPR000760 Inositol monophosphatase GO:0046854 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 2.9E-58 T 11-11-2016 IPR000760 Inositol monophosphatase GO:0046854 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 2.9E-58 T 11-11-2016 IPR000760 Inositol monophosphatase GO:0046854 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 211 225 - T 11-11-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 104 123 2.5E-32 T 11-11-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 2.5E-32 T 11-11-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 156 182 2.5E-32 T 11-11-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 PRINTS PR01959 SuhB family inositol monophosphatase signature 198 210 2.5E-32 T 11-11-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 vm_RS11450 e204de53c1729cdc41810d7eb4da0abb 267 Gene3D G3DSA:3.40.190.80 152 259 8.3E-39 T 11-11-2016 vm_RS07750 150dd1dd0b4d09b1d316d28f160243ae 131 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 124 4.5E-16 T 11-11-2016 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 vm_RS07750 150dd1dd0b4d09b1d316d28f160243ae 131 SUPERFAMILY SSF55331 2 124 8.97E-41 T 11-11-2016 IPR014347 Tautomerase/MIF superfamily vm_RS07750 150dd1dd0b4d09b1d316d28f160243ae 131 Gene3D G3DSA:3.30.429.10 2 125 9.3E-43 T 11-11-2016 vm_RS06340 01c7bad5e063f27cf604afb6f4e2e213 221 Gene3D G3DSA:1.10.3480.10 3 215 6.9E-51 T 11-11-2016 IPR020945 DMSO/Nitrate reductase chaperone vm_RS06340 01c7bad5e063f27cf604afb6f4e2e213 221 SUPERFAMILY SSF89155 9 217 4.97E-52 T 11-11-2016 IPR020945 DMSO/Nitrate reductase chaperone vm_RS06340 01c7bad5e063f27cf604afb6f4e2e213 221 Pfam PF02613 Nitrate reductase delta subunit 51 183 2.1E-39 T 11-11-2016 IPR020945 DMSO/Nitrate reductase chaperone vm_RS06340 01c7bad5e063f27cf604afb6f4e2e213 221 Hamap MF_01150 Chaperone protein TorD [torD]. 4 212 34.357 T 11-11-2016 IPR023069 Chaperone TorD vm_RS08345 3a2f6012c42f998fdd39a0a89658e50c 280 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 12 269 1.9E-99 T 11-11-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 vm_RS08345 3a2f6012c42f998fdd39a0a89658e50c 280 SUPERFAMILY SSF53613 8 271 3.12E-81 T 11-11-2016 IPR029056 Ribokinase-like vm_RS08345 3a2f6012c42f998fdd39a0a89658e50c 280 Gene3D G3DSA:3.40.1190.20 10 269 2.2E-101 T 11-11-2016 IPR029056 Ribokinase-like vm_RS08345 3a2f6012c42f998fdd39a0a89658e50c 280 Pfam PF08543 Phosphomethylpyrimidine kinase 19 267 5.8E-94 T 11-11-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-964975 vm_RS11035 dd7dea213ff05cb6e2759549748fa3e5 193 Pfam PF11985 Protein of unknown function (DUF3486) 7 191 5.9E-56 T 11-11-2016 IPR021874 Bacteriophage Mu, Gp27 vm_RS01995 b5c9a463e207be38c908743088107eba 63 SUPERFAMILY SSF46561 1 61 1.7E-23 T 11-11-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01995 b5c9a463e207be38c908743088107eba 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 19.159 T 11-11-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01995 b5c9a463e207be38c908743088107eba 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 11-11-2016 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01995 b5c9a463e207be38c908743088107eba 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 3.7E-24 T 11-11-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01995 b5c9a463e207be38c908743088107eba 63 Gene3D G3DSA:1.10.287.310 1 60 4.0E-30 T 11-11-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01995 b5c9a463e207be38c908743088107eba 63 Pfam PF00831 Ribosomal L29 protein 4 60 1.4E-25 T 11-11-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS12565 99e4c5dfbfbc4468ef39530ca1d00ad8 168 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 129 6.4E-25 T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS12565 99e4c5dfbfbc4468ef39530ca1d00ad8 168 Gene3D G3DSA:3.30.70.560 4 149 1.6E-37 T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS12565 99e4c5dfbfbc4468ef39530ca1d00ad8 168 SUPERFAMILY SSF55083 1 148 1.44E-37 T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS12565 99e4c5dfbfbc4468ef39530ca1d00ad8 168 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 4 129 3.2E-32 T 11-11-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS07635 ce58fb9daf250b104915f98896d14bfe 256 Gene3D G3DSA:1.10.3720.10 4 254 4.2E-58 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS07635 ce58fb9daf250b104915f98896d14bfe 256 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 251 4.3E-19 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS07635 ce58fb9daf250b104915f98896d14bfe 256 SUPERFAMILY SSF161098 5 254 1.31E-55 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS11600 65dd0b61be65f61d2fdcc1b4e70ab733 304 Gene3D G3DSA:3.40.50.1820 77 303 1.2E-51 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS11600 65dd0b61be65f61d2fdcc1b4e70ab733 304 SUPERFAMILY SSF53474 79 302 2.1E-40 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS11600 65dd0b61be65f61d2fdcc1b4e70ab733 304 Pfam PF01738 Dienelactone hydrolase family 92 299 7.8E-45 T 11-11-2016 IPR002925 Dienelactone hydrolase GO:0016787 vm_RS08230 9f51555da65344d1b7d732e4a6fe7685 306 Pfam PF04393 Protein of unknown function (DUF535) 25 295 5.7E-78 T 11-11-2016 IPR007488 Protein of unknown function DUF535 vm_RS06165 138d8e1d53e24bb557160b9549b9713d 495 Gene3D G3DSA:3.30.450.90 141 238 3.1E-37 T 11-11-2016 vm_RS06165 138d8e1d53e24bb557160b9549b9713d 495 Pfam PF00437 Type II/IV secretion system protein 144 421 1.0E-85 T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 vm_RS06165 138d8e1d53e24bb557160b9549b9713d 495 SUPERFAMILY SSF52540 126 459 5.06E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06165 138d8e1d53e24bb557160b9549b9713d 495 Gene3D G3DSA:3.40.50.300 242 474 3.2E-67 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09725 caca179e8a3980bd2932f66b9c1afa97 402 Pfam PF06527 TniQ 5 156 6.0E-14 T 11-11-2016 IPR009492 TniQ vm_RS13370 766d41c2c05009ecc8cfa55cf8868925 670 Gene3D G3DSA:1.10.443.10 275 488 3.0E-7 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS13370 766d41c2c05009ecc8cfa55cf8868925 670 SUPERFAMILY SSF56349 275 348 2.12E-5 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS13370 766d41c2c05009ecc8cfa55cf8868925 670 SUPERFAMILY SSF56349 390 486 2.12E-5 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 Pfam PF02368 Bacterial Ig-like domain (group 2) 140 211 2.3E-5 T 11-11-2016 IPR003343 Bacterial Ig-like, group 2 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 Pfam PF02368 Bacterial Ig-like domain (group 2) 227 301 1.4E-5 T 11-11-2016 IPR003343 Bacterial Ig-like, group 2 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 Pfam PF02368 Bacterial Ig-like domain (group 2) 53 122 7.0E-7 T 11-11-2016 IPR003343 Bacterial Ig-like, group 2 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 Pfam PF02368 Bacterial Ig-like domain (group 2) 400 467 1.3E-7 T 11-11-2016 IPR003343 Bacterial Ig-like, group 2 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 SUPERFAMILY SSF49373 168 219 6.28E-6 T 11-11-2016 IPR008964 Invasin/intimin cell-adhesion fragments vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 SMART SM00635 50 132 8.7E-10 T 11-11-2016 IPR003343 Bacterial Ig-like, group 2 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 SMART SM00635 138 219 0.011 T 11-11-2016 IPR003343 Bacterial Ig-like, group 2 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 SMART SM00635 397 478 4.1E-10 T 11-11-2016 IPR003343 Bacterial Ig-like, group 2 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 SMART SM00635 225 305 2.5E-5 T 11-11-2016 IPR003343 Bacterial Ig-like, group 2 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 SMART SM00635 311 391 2.6E-4 T 11-11-2016 IPR003343 Bacterial Ig-like, group 2 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 SUPERFAMILY SSF49373 428 479 5.1E-7 T 11-11-2016 IPR008964 Invasin/intimin cell-adhesion fragments vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 Gene3D G3DSA:2.60.40.1080 49 125 9.4E-8 T 11-11-2016 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 Gene3D G3DSA:2.60.40.1080 139 222 3.2E-7 T 11-11-2016 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 Gene3D G3DSA:2.60.40.1080 227 308 3.0E-5 T 11-11-2016 vm_RS06060 02122f38641e4d3e0b99c17f46720b12 683 Gene3D G3DSA:2.60.40.1080 398 479 1.5E-10 T 11-11-2016 vm_RS14925 0d00de335518bb98804eccdc260392f2 609 Pfam PF07669 Eco57I restriction-modification methylase 241 346 1.3E-11 T 11-11-2016 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 vm_RS14925 0d00de335518bb98804eccdc260392f2 609 Gene3D G3DSA:3.40.50.150 127 362 1.4E-35 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS14925 0d00de335518bb98804eccdc260392f2 609 SUPERFAMILY SSF53335 104 352 4.22E-46 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS14925 0d00de335518bb98804eccdc260392f2 609 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 245 251 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 vm_RS14925 0d00de335518bb98804eccdc260392f2 609 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 273 297 8.3E-19 T 11-11-2016 vm_RS14925 0d00de335518bb98804eccdc260392f2 609 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 153 167 8.3E-19 T 11-11-2016 vm_RS14925 0d00de335518bb98804eccdc260392f2 609 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 242 254 8.3E-19 T 11-11-2016 vm_RS14925 0d00de335518bb98804eccdc260392f2 609 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 125 141 8.3E-19 T 11-11-2016 vm_RS03435 8612b701e0d5c064dd71565b49ff50e2 106 SUPERFAMILY SSF82657 1 89 3.92E-32 T 11-11-2016 IPR002634 BolA protein vm_RS03435 8612b701e0d5c064dd71565b49ff50e2 106 Gene3D G3DSA:3.30.300.90 1 101 7.7E-35 T 11-11-2016 IPR002634 BolA protein vm_RS03435 8612b701e0d5c064dd71565b49ff50e2 106 PIRSF PIRSF003113 1 99 2.0E-38 T 11-11-2016 IPR002634 BolA protein vm_RS03435 8612b701e0d5c064dd71565b49ff50e2 106 Pfam PF01722 BolA-like protein 10 83 3.5E-32 T 11-11-2016 IPR002634 BolA protein vm_RS13930 2a4975ae069d22fe680a445a06a36ed9 510 SUPERFAMILY SSF64158 78 308 1.02E-81 T 11-11-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS13930 2a4975ae069d22fe680a445a06a36ed9 510 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 83 297 2.8E-80 T 11-11-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS13930 2a4975ae069d22fe680a445a06a36ed9 510 Gene3D G3DSA:3.40.1450.10 79 308 1.8E-94 T 11-11-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS13930 2a4975ae069d22fe680a445a06a36ed9 510 PIRSF PIRSF001492 1 510 2.9E-204 T 11-11-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS13930 2a4975ae069d22fe680a445a06a36ed9 510 Gene3D G3DSA:3.40.720.10 5 78 4.3E-90 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 vm_RS13930 2a4975ae069d22fe680a445a06a36ed9 510 Gene3D G3DSA:3.40.720.10 313 508 4.3E-90 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 vm_RS13930 2a4975ae069d22fe680a445a06a36ed9 510 Pfam PF01676 Metalloenzyme superfamily 5 496 1.7E-82 T 11-11-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 vm_RS13930 2a4975ae069d22fe680a445a06a36ed9 510 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 5 510 49.582 T 11-11-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS13930 2a4975ae069d22fe680a445a06a36ed9 510 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 5 508 3.4E-228 T 11-11-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 vm_RS13930 2a4975ae069d22fe680a445a06a36ed9 510 SUPERFAMILY SSF53649 309 509 1.03E-78 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 vm_RS13930 2a4975ae069d22fe680a445a06a36ed9 510 SUPERFAMILY SSF53649 5 78 1.03E-78 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 vm_RS06055 bd61f98f25ebed9cc6a653e940ed05d0 400 SUPERFAMILY SSF52402 7 231 2.46E-31 T 11-11-2016 vm_RS06055 bd61f98f25ebed9cc6a653e940ed05d0 400 Pfam PF11922 Domain of unknown function (DUF3440) 346 388 3.7E-7 T 11-11-2016 IPR021845 Protein of unknown function DUF3440 vm_RS06055 bd61f98f25ebed9cc6a653e940ed05d0 400 Pfam PF11922 Domain of unknown function (DUF3440) 236 339 7.7E-29 T 11-11-2016 IPR021845 Protein of unknown function DUF3440 vm_RS06055 bd61f98f25ebed9cc6a653e940ed05d0 400 Gene3D G3DSA:3.40.50.620 12 234 4.9E-23 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS06055 bd61f98f25ebed9cc6a653e940ed05d0 400 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 28 233 1.8E-8 T 11-11-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 Reactome: R-HSA-196843 vm_RS05040 7d6ec31fe738e62bf35f9756b8c24e4f 185 TIGRFAM TIGR00752 slp: outer membrane lipoprotein, Slp family 8 160 8.7E-34 T 11-11-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 vm_RS05040 7d6ec31fe738e62bf35f9756b8c24e4f 185 Pfam PF03843 Outer membrane lipoprotein Slp family 17 168 3.9E-44 T 11-11-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 vm_RS05040 7d6ec31fe738e62bf35f9756b8c24e4f 185 PIRSF PIRSF004982 2 185 1.4E-67 T 11-11-2016 IPR004658 Outer membrane lipoprotein Slp GO:0019867 vm_RS14580 77c501832ffed0b6abd4e9fd6c84c111 302 SUPERFAMILY SSF103481 188 289 3.53E-8 T 11-11-2016 vm_RS14580 77c501832ffed0b6abd4e9fd6c84c111 302 Pfam PF00892 EamA-like transporter family 10 144 3.0E-15 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS14580 77c501832ffed0b6abd4e9fd6c84c111 302 SUPERFAMILY SSF103481 44 144 2.09E-13 T 11-11-2016 vm_RS14580 77c501832ffed0b6abd4e9fd6c84c111 302 TIGRFAM TIGR00688 rarD: protein RarD 10 263 7.5E-83 T 11-11-2016 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 Gene3D G3DSA:1.10.560.10 3 188 1.7E-48 T 11-11-2016 IPR027413 GroEL-like equatorial domain vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 Gene3D G3DSA:3.50.7.10 189 368 5.0E-99 T 11-11-2016 IPR027409 GroEL-like apical domain vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 522 1.5E-94 T 11-11-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 SUPERFAMILY SSF52029 185 376 2.27E-83 T 11-11-2016 IPR027409 GroEL-like apical domain vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 PRINTS PR00298 60kDa chaperonin signature 27 53 2.5E-74 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 PRINTS PR00298 60kDa chaperonin signature 83 110 2.5E-74 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 PRINTS PR00298 60kDa chaperonin signature 398 419 2.5E-74 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 PRINTS PR00298 60kDa chaperonin signature 350 375 2.5E-74 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 PRINTS PR00298 60kDa chaperonin signature 268 291 2.5E-74 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 SUPERFAMILY SSF54849 139 203 1.14E-23 T 11-11-2016 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 11-11-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 Hamap MF_00600 60 kDa chaperonin [groL]. 2 543 41.454 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 SUPERFAMILY SSF48592 406 521 7.41E-77 T 11-11-2016 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 SUPERFAMILY SSF48592 7 134 7.41E-77 T 11-11-2016 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 4.5E-252 T 11-11-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020 vm_RS01640 f98181dc66a28f7b5e21f0532fdb83b1 544 Gene3D G3DSA:1.10.560.10 369 518 4.3E-41 T 11-11-2016 IPR027413 GroEL-like equatorial domain vm_RS00650 3eebd49137e22afcc167f6759d8a174f 109 Pfam PF10694 Protein of unknown function (DUF2500) 5 105 1.9E-23 T 11-11-2016 IPR019635 Protein of unknown function DUF2500 vm_RS02910 1258721117500359b9d155119b1474fa 256 SMART SM00895 99 227 2.2E-20 T 11-11-2016 IPR011711 GntR, C-terminal vm_RS02910 1258721117500359b9d155119b1474fa 256 Pfam PF07729 FCD domain 99 226 1.5E-20 T 11-11-2016 IPR011711 GntR, C-terminal vm_RS02910 1258721117500359b9d155119b1474fa 256 SUPERFAMILY SSF46785 5 77 5.73E-22 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS02910 1258721117500359b9d155119b1474fa 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 2.8E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS02910 1258721117500359b9d155119b1474fa 256 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 2.8E-9 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS02910 1258721117500359b9d155119b1474fa 256 Gene3D G3DSA:1.10.10.10 7 77 2.8E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS02910 1258721117500359b9d155119b1474fa 256 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 3.4E-25 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS02910 1258721117500359b9d155119b1474fa 256 SUPERFAMILY SSF48008 97 235 4.71E-21 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal vm_RS02910 1258721117500359b9d155119b1474fa 256 Gene3D G3DSA:1.20.120.530 98 238 3.2E-21 T 11-11-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal vm_RS02910 1258721117500359b9d155119b1474fa 256 SMART SM00345 15 74 2.8E-27 T 11-11-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 vm_RS01980 a06f7175b099c7582a5efb6f7eed1b69 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 11-11-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01980 a06f7175b099c7582a5efb6f7eed1b69 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 1.2E-49 T 11-11-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS01980 a06f7175b099c7582a5efb6f7eed1b69 110 Gene3D G3DSA:3.90.470.10 1 109 1.3E-45 T 11-11-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 vm_RS01980 a06f7175b099c7582a5efb6f7eed1b69 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 29.588 T 11-11-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS01980 a06f7175b099c7582a5efb6f7eed1b69 110 SUPERFAMILY SSF54843 1 109 6.15E-45 T 11-11-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 vm_RS01980 a06f7175b099c7582a5efb6f7eed1b69 110 Pfam PF00237 Ribosomal protein L22p/L17e 9 107 6.9E-36 T 11-11-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 SMART SM00841 131 186 9.2E-31 T 11-11-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 SUPERFAMILY SSF50249 70 128 1.93E-16 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 5 61 5.9E-25 T 11-11-2016 IPR013185 Translation elongation factor, KOW-like vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 Pfam PF01132 Elongation factor P (EF-P) OB domain 71 123 1.7E-21 T 11-11-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 PIRSF PIRSF005901 2 188 3.2E-63 T 11-11-2016 IPR020599 Translation elongation factor P/YeiP vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 Hamap MF_00141 Elongation factor P [efp]. 3 187 49.005 T 11-11-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 Gene3D G3DSA:2.40.50.140 130 187 5.2E-28 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 SMART SM01185 69 123 2.6E-24 T 11-11-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 TIGRFAM TIGR00038 efp: translation elongation factor P 5 187 2.1E-76 T 11-11-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 SUPERFAMILY SSF50249 130 187 3.6E-18 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 SUPERFAMILY SSF50104 2 64 2.31E-20 T 11-11-2016 IPR008991 Translation protein SH3-like domain vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 Pfam PF09285 Elongation factor P, C-terminal 131 186 9.1E-25 T 11-11-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 ProSitePatterns PS01275 Elongation factor P signature. 152 171 - T 11-11-2016 IPR013852 Translation elongation factor P/YeiP, conserved site vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 Gene3D G3DSA:2.40.50.140 67 129 2.8E-24 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01655 93ee3c62db67479aa1f46dbad7a647b1 188 Gene3D G3DSA:2.30.30.30 1 65 1.9E-28 T 11-11-2016 IPR014722 Ribosomal protein L2 domain 2 vm_RS07715 4ab8f26501c02711c6914edf73eb1831 172 SUPERFAMILY SSF141452 3 168 1.57E-40 T 11-11-2016 IPR008514 Type VI secretion system effector, Hcp vm_RS07715 4ab8f26501c02711c6914edf73eb1831 172 Pfam PF05638 Type VI secretion system effector, Hcp 6 155 2.4E-34 T 11-11-2016 IPR008514 Type VI secretion system effector, Hcp vm_RS07715 4ab8f26501c02711c6914edf73eb1831 172 Gene3D G3DSA:2.30.110.20 1 166 4.6E-35 T 11-11-2016 IPR008514 Type VI secretion system effector, Hcp vm_RS07715 4ab8f26501c02711c6914edf73eb1831 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 168 8.6E-65 T 11-11-2016 IPR008514 Type VI secretion system effector, Hcp vm_RS06440 5b2cf0eeeb0d4a2ba27c0582313ed93c 181 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 175 18.684 T 11-11-2016 IPR006008 Intracellular septation protein A GO:0016021 vm_RS06440 5b2cf0eeeb0d4a2ba27c0582313ed93c 181 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 177 4.7E-66 T 11-11-2016 IPR006008 Intracellular septation protein A GO:0016021 vm_RS06440 5b2cf0eeeb0d4a2ba27c0582313ed93c 181 Pfam PF04279 Intracellular septation protein A 1 174 2.6E-69 T 11-11-2016 IPR006008 Intracellular septation protein A GO:0016021 vm_RS11090 731282d9d242a6bcb232df52ff876605 180 Pfam PF05069 Phage virion morphogenesis family 14 172 3.8E-22 T 11-11-2016 IPR006522 Phage virion morphogensis protein vm_RS01390 731282d9d242a6bcb232df52ff876605 180 Pfam PF05069 Phage virion morphogenesis family 14 172 3.8E-22 T 11-11-2016 IPR006522 Phage virion morphogensis protein vm_RS05310 10b0ca4ecb417346f5fa4add63f28b3a 208 SUPERFAMILY SSF52096 23 206 7.23E-76 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS05310 10b0ca4ecb417346f5fa4add63f28b3a 208 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 16 206 44.565 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 vm_RS05310 10b0ca4ecb417346f5fa4add63f28b3a 208 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 103 114 - T 11-11-2016 IPR018215 ClpP, Ser active site vm_RS05310 10b0ca4ecb417346f5fa4add63f28b3a 208 Pfam PF00574 Clp protease 25 205 5.8E-90 T 11-11-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA vm_RS05310 10b0ca4ecb417346f5fa4add63f28b3a 208 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 15 205 2.5E-107 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 vm_RS05310 10b0ca4ecb417346f5fa4add63f28b3a 208 Gene3D G3DSA:3.90.226.10 16 205 2.6E-93 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS05310 10b0ca4ecb417346f5fa4add63f28b3a 208 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 125 138 - T 11-11-2016 IPR033135 ClpP, histidine active site vm_RS05310 10b0ca4ecb417346f5fa4add63f28b3a 208 PRINTS PR00127 Clp protease catalytic subunit P signature 32 47 2.3E-54 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 vm_RS05310 10b0ca4ecb417346f5fa4add63f28b3a 208 PRINTS PR00127 Clp protease catalytic subunit P signature 181 200 2.3E-54 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 vm_RS05310 10b0ca4ecb417346f5fa4add63f28b3a 208 PRINTS PR00127 Clp protease catalytic subunit P signature 103 120 2.3E-54 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 vm_RS05310 10b0ca4ecb417346f5fa4add63f28b3a 208 PRINTS PR00127 Clp protease catalytic subunit P signature 72 92 2.3E-54 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 vm_RS05310 10b0ca4ecb417346f5fa4add63f28b3a 208 PRINTS PR00127 Clp protease catalytic subunit P signature 124 143 2.3E-54 T 11-11-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 vm_RS04110 fa6368aed72640fba51fdb2370c5fce9 78 Pfam PF01206 Sulfurtransferase TusA 5 55 1.4E-12 T 11-11-2016 IPR001455 TusA-like domain vm_RS04110 fa6368aed72640fba51fdb2370c5fce9 78 SUPERFAMILY SSF64307 4 64 3.27E-12 T 11-11-2016 IPR001455 TusA-like domain vm_RS04110 fa6368aed72640fba51fdb2370c5fce9 78 Gene3D G3DSA:3.30.110.40 5 72 8.2E-13 T 11-11-2016 IPR001455 TusA-like domain vm_RS08380 e383524f0701b51d54bd5401e18a8dd4 545 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 22 545 55.943 T 11-11-2016 IPR023704 Glucan biosynthesis protein G vm_RS08380 e383524f0701b51d54bd5401e18a8dd4 545 PIRSF PIRSF006281 26 545 3.8E-210 T 11-11-2016 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D vm_RS08380 e383524f0701b51d54bd5401e18a8dd4 545 Gene3D G3DSA:2.60.40.10 449 544 2.4E-19 T 11-11-2016 IPR013783 Immunoglobulin-like fold vm_RS08380 e383524f0701b51d54bd5401e18a8dd4 545 SUPERFAMILY SSF74650 72 442 5.65E-163 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 vm_RS08380 e383524f0701b51d54bd5401e18a8dd4 545 Gene3D G3DSA:2.70.98.10 71 444 7.1E-169 T 11-11-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 vm_RS08380 e383524f0701b51d54bd5401e18a8dd4 545 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 72 543 1.5E-193 T 11-11-2016 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 vm_RS08380 e383524f0701b51d54bd5401e18a8dd4 545 SUPERFAMILY SSF81296 448 544 4.48E-17 T 11-11-2016 IPR014756 Immunoglobulin E-set vm_RS13395 951b822626bfc738fe17c8b3dd32971f 140 PIRSF PIRSF018193 8 140 2.1E-60 T 11-11-2016 IPR016716 Regulator of ribonuclease activity B vm_RS13395 951b822626bfc738fe17c8b3dd32971f 140 Pfam PF06877 Regulator of ribonuclease activity B 19 120 2.3E-33 T 11-11-2016 IPR009671 Regulator of ribonuclease activity B domain vm_RS13395 951b822626bfc738fe17c8b3dd32971f 140 Gene3D G3DSA:3.30.70.970 9 129 5.0E-51 T 11-11-2016 IPR009671 Regulator of ribonuclease activity B domain vm_RS13395 951b822626bfc738fe17c8b3dd32971f 140 Hamap MF_01888 Regulator of ribonuclease activity B [rraB]. 11 124 30.107 T 11-11-2016 IPR016716 Regulator of ribonuclease activity B vm_RS13395 951b822626bfc738fe17c8b3dd32971f 140 SUPERFAMILY SSF89946 7 126 6.15E-40 T 11-11-2016 IPR009671 Regulator of ribonuclease activity B domain vm_RS02805 75cfa0157dcef1b32b095b1cca2d1843 208 SUPERFAMILY SSF55811 3 206 1.65E-44 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS02805 75cfa0157dcef1b32b095b1cca2d1843 208 Gene3D G3DSA:3.90.79.10 14 201 1.4E-52 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS02805 75cfa0157dcef1b32b095b1cca2d1843 208 ProSitePatterns PS00893 Nudix box signature. 96 117 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 vm_RS02805 75cfa0157dcef1b32b095b1cca2d1843 208 Pfam PF00293 NUDIX domain 59 175 9.6E-8 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 vm_RS02805 75cfa0157dcef1b32b095b1cca2d1843 208 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 15 198 1.4E-59 T 11-11-2016 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 Reactome: R-HSA-480985 vm_RS08735 7f4cf8c1fef0b00fff645c20f4c8e0dd 98 SUPERFAMILY SSF47729 3 95 1.4E-32 T 11-11-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 vm_RS08735 7f4cf8c1fef0b00fff645c20f4c8e0dd 98 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 2 94 9.2E-51 T 11-11-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 vm_RS08735 7f4cf8c1fef0b00fff645c20f4c8e0dd 98 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 5.9E-17 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS08735 7f4cf8c1fef0b00fff645c20f4c8e0dd 98 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 5.9E-17 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS08735 7f4cf8c1fef0b00fff645c20f4c8e0dd 98 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 5.9E-17 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS08735 7f4cf8c1fef0b00fff645c20f4c8e0dd 98 SMART SM00411 3 92 7.9E-41 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS08735 7f4cf8c1fef0b00fff645c20f4c8e0dd 98 Pfam PF00216 Bacterial DNA-binding protein 3 91 5.2E-32 T 11-11-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 vm_RS08735 7f4cf8c1fef0b00fff645c20f4c8e0dd 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 48 67 - T 11-11-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 vm_RS08735 7f4cf8c1fef0b00fff645c20f4c8e0dd 98 Gene3D G3DSA:4.10.520.10 2 93 2.5E-37 T 11-11-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 vm_RS08735 7f4cf8c1fef0b00fff645c20f4c8e0dd 98 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 1 97 30.411 T 11-11-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355 vm_RS07070 8784ec671e4c80e406b93c67fcdd7e98 248 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 2 244 2.2E-109 T 11-11-2016 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 vm_RS07070 8784ec671e4c80e406b93c67fcdd7e98 248 SUPERFAMILY SSF52540 2 230 8.79E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07070 8784ec671e4c80e406b93c67fcdd7e98 248 Gene3D G3DSA:3.40.50.300 1 231 5.5E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07070 8784ec671e4c80e406b93c67fcdd7e98 248 SMART SM00382 26 223 5.6E-11 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS07070 8784ec671e4c80e406b93c67fcdd7e98 248 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS07070 8784ec671e4c80e406b93c67fcdd7e98 248 Pfam PF00005 ABC transporter 17 172 7.6E-21 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS02510 b636f15067a6d1bd824d7584b8cbe695 363 SUPERFAMILY SSF53659 4 360 1.67E-123 T 11-11-2016 vm_RS02510 b636f15067a6d1bd824d7584b8cbe695 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 356 2.6E-137 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 vm_RS02510 b636f15067a6d1bd824d7584b8cbe695 363 Gene3D G3DSA:3.40.718.10 3 359 6.3E-134 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 vm_RS02510 b636f15067a6d1bd824d7584b8cbe695 363 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 6 360 51.328 T 11-11-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 vm_RS02510 b636f15067a6d1bd824d7584b8cbe695 363 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 7 355 3.5E-164 T 11-11-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396 vm_RS02510 b636f15067a6d1bd824d7584b8cbe695 363 SMART SM01329 7 356 1.5E-203 T 11-11-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 vm_RS02510 b636f15067a6d1bd824d7584b8cbe695 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 248 267 - T 11-11-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 vm_RS02590 ae36ab88bfaedbad6174e3fd6c9ea85a 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 156 171 2.4E-20 T 11-11-2016 vm_RS02590 ae36ab88bfaedbad6174e3fd6c9ea85a 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 2.4E-20 T 11-11-2016 vm_RS02590 ae36ab88bfaedbad6174e3fd6c9ea85a 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 2.4E-20 T 11-11-2016 vm_RS02590 ae36ab88bfaedbad6174e3fd6c9ea85a 409 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 2.4E-20 T 11-11-2016 vm_RS02590 ae36ab88bfaedbad6174e3fd6c9ea85a 409 Pfam PF01494 FAD binding domain 5 348 9.2E-30 T 11-11-2016 IPR002938 FAD-binding domain GO:0071949 vm_RS02590 ae36ab88bfaedbad6174e3fd6c9ea85a 409 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 391 7.8E-140 T 11-11-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 Reactome: R-HSA-2142789 vm_RS02590 ae36ab88bfaedbad6174e3fd6c9ea85a 409 SUPERFAMILY SSF51905 5 177 2.72E-62 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02590 ae36ab88bfaedbad6174e3fd6c9ea85a 409 SUPERFAMILY SSF51905 268 385 2.72E-62 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02590 ae36ab88bfaedbad6174e3fd6c9ea85a 409 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 295 308 - T 11-11-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 Reactome: R-HSA-2142789 vm_RS02590 ae36ab88bfaedbad6174e3fd6c9ea85a 409 Gene3D G3DSA:3.50.50.60 269 357 4.2E-48 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS02590 ae36ab88bfaedbad6174e3fd6c9ea85a 409 Gene3D G3DSA:3.50.50.60 4 182 4.2E-48 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS12310 de8d52f4b6d11b1db6381760fadb44c8 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 5.6E-47 T 11-11-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 vm_RS12310 de8d52f4b6d11b1db6381760fadb44c8 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 11-11-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 vm_RS12310 de8d52f4b6d11b1db6381760fadb44c8 130 SUPERFAMILY SSF54211 5 130 2.31E-48 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS12310 de8d52f4b6d11b1db6381760fadb44c8 130 Gene3D G3DSA:3.30.230.10 4 130 2.0E-51 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS12310 de8d52f4b6d11b1db6381760fadb44c8 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.585 T 11-11-2016 IPR023035 Ribosomal protein S9, bacterial/plastid vm_RS09620 acde59c911e91fdd06920450c3620aad 436 SUPERFAMILY SSF51905 6 225 5.44E-21 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS09620 acde59c911e91fdd06920450c3620aad 436 Gene3D G3DSA:3.50.50.60 24 189 1.5E-16 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS09620 acde59c911e91fdd06920450c3620aad 436 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 9 336 1.2E-107 T 11-11-2016 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase vm_RS09620 acde59c911e91fdd06920450c3620aad 436 Gene3D G3DSA:3.50.50.60 190 220 1.7E-5 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS09620 acde59c911e91fdd06920450c3620aad 436 Gene3D G3DSA:3.50.50.60 258 404 1.7E-5 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS09620 acde59c911e91fdd06920450c3620aad 436 SUPERFAMILY SSF51905 183 223 1.77E-5 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS09620 acde59c911e91fdd06920450c3620aad 436 SUPERFAMILY SSF51905 264 408 1.77E-5 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS11495 5287bca52af82dd918d89b550b61699b 437 PIRSF PIRSF001362 1 437 6.2E-225 T 11-11-2016 vm_RS11495 5287bca52af82dd918d89b550b61699b 437 Pfam PF00463 Isocitrate lyase family 14 257 5.3E-62 T 11-11-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 vm_RS11495 5287bca52af82dd918d89b550b61699b 437 Pfam PF00463 Isocitrate lyase family 258 436 2.3E-52 T 11-11-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 vm_RS11495 5287bca52af82dd918d89b550b61699b 437 SUPERFAMILY SSF51621 6 436 8.52E-154 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS11495 5287bca52af82dd918d89b550b61699b 437 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 258 436 8.8E-90 T 11-11-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 vm_RS11495 5287bca52af82dd918d89b550b61699b 437 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 10 257 2.6E-113 T 11-11-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969 vm_RS11495 5287bca52af82dd918d89b550b61699b 437 ProSitePatterns PS00161 Isocitrate lyase signature. 195 200 - T 11-11-2016 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 vm_RS11495 5287bca52af82dd918d89b550b61699b 437 Gene3D G3DSA:3.20.20.60 7 419 5.5E-169 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS03440 52d15ab9c46a27964613e7863e52deb8 446 TIGRFAM TIGR01936 nqrA: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit 2 446 9.7E-212 T 11-11-2016 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 vm_RS03440 52d15ab9c46a27964613e7863e52deb8 446 Hamap MF_00425 Na(+)-translocating NADH-quinone reductase subunit A [nqrA]. 1 446 46.292 T 11-11-2016 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 vm_RS03440 52d15ab9c46a27964613e7863e52deb8 446 Pfam PF11973 NQRA C-terminal domain 261 310 4.8E-21 T 11-11-2016 IPR022615 Na(+)-translocating NADH-quinone reductase subunit A, C-terminal domain GO:0016655|GO:0055114 vm_RS03440 52d15ab9c46a27964613e7863e52deb8 446 Pfam PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) 1 256 1.7E-114 T 11-11-2016 IPR008703 Na(+)-translocating NADH-quinone reductase subunit A GO:0006814|GO:0016655|GO:0055114 vm_RS02185 386c74e50b6e92a7858e02774f18d0b1 212 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 44 197 5.8E-66 T 11-11-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 vm_RS02185 386c74e50b6e92a7858e02774f18d0b1 212 Gene3D G3DSA:3.30.1060.10 4 197 8.4E-82 T 11-11-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 vm_RS02185 386c74e50b6e92a7858e02774f18d0b1 212 Pfam PF01625 Peptide methionine sulfoxide reductase 44 197 6.5E-68 T 11-11-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 vm_RS02185 386c74e50b6e92a7858e02774f18d0b1 212 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 42 203 38.258 T 11-11-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 vm_RS02185 386c74e50b6e92a7858e02774f18d0b1 212 SUPERFAMILY SSF55068 3 207 9.03E-81 T 11-11-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 Reactome: R-HSA-5676934 vm_RS14295 d18475f0fa55c6625476a50f9f163044 646 Gene3D G3DSA:3.40.50.720 281 471 1.9E-38 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14295 d18475f0fa55c6625476a50f9f163044 646 Gene3D G3DSA:3.40.50.720 140 228 1.4E-13 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14295 d18475f0fa55c6625476a50f9f163044 646 Pfam PF13727 CoA-binding domain 69 238 1.0E-7 T 11-11-2016 vm_RS14295 d18475f0fa55c6625476a50f9f163044 646 Gene3D G3DSA:3.90.25.10 472 557 3.4E-7 T 11-11-2016 vm_RS14295 d18475f0fa55c6625476a50f9f163044 646 SUPERFAMILY SSF51735 280 559 5.23E-51 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14295 d18475f0fa55c6625476a50f9f163044 646 SUPERFAMILY SSF51735 146 269 3.78E-16 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS14295 d18475f0fa55c6625476a50f9f163044 646 Pfam PF02719 Polysaccharide biosynthesis protein 283 580 1.2E-128 T 11-11-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain vm_RS00590 17889056e8f1344b94366bb3f603a408 232 Gene3D G3DSA:3.30.450.40 53 215 0.001 T 11-11-2016 IPR029016 GAF domain-like vm_RS00590 17889056e8f1344b94366bb3f603a408 232 Pfam PF04340 Protein of unknown function, DUF484 5 221 1.1E-81 T 11-11-2016 IPR007435 Protein of unknown function DUF484 vm_RS07520 8053af7048ccdbf2c2b9fc4e629ea0b0 549 SUPERFAMILY SSF54211 314 506 7.21E-34 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS07520 8053af7048ccdbf2c2b9fc4e629ea0b0 549 Pfam PF13654 AAA domain 79 287 1.9E-19 T 11-11-2016 vm_RS07520 8053af7048ccdbf2c2b9fc4e629ea0b0 549 Gene3D G3DSA:3.30.230.10 306 506 6.8E-33 T 11-11-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup vm_RS07520 8053af7048ccdbf2c2b9fc4e629ea0b0 549 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 314 330 1.1E-11 T 11-11-2016 vm_RS07520 8053af7048ccdbf2c2b9fc4e629ea0b0 549 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 427 446 1.1E-11 T 11-11-2016 vm_RS07520 8053af7048ccdbf2c2b9fc4e629ea0b0 549 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 397 416 1.1E-11 T 11-11-2016 vm_RS07520 8053af7048ccdbf2c2b9fc4e629ea0b0 549 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 457 475 1.1E-11 T 11-11-2016 vm_RS07520 8053af7048ccdbf2c2b9fc4e629ea0b0 549 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 400 503 1.2E-9 T 11-11-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 vm_RS10850 2b36766209544905afd65ec9cedc4a19 200 SUPERFAMILY SSF51064 145 200 2.35E-19 T 11-11-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 vm_RS10850 2b36766209544905afd65ec9cedc4a19 200 PRINTS PR00773 GrpE protein signature 97 112 6.9E-29 T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 vm_RS10850 2b36766209544905afd65ec9cedc4a19 200 PRINTS PR00773 GrpE protein signature 69 85 6.9E-29 T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 vm_RS10850 2b36766209544905afd65ec9cedc4a19 200 PRINTS PR00773 GrpE protein signature 152 167 6.9E-29 T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 vm_RS10850 2b36766209544905afd65ec9cedc4a19 200 PRINTS PR00773 GrpE protein signature 179 198 6.9E-29 T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 vm_RS10850 2b36766209544905afd65ec9cedc4a19 200 Gene3D G3DSA:3.90.20.20 44 143 4.7E-32 T 11-11-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 vm_RS10850 2b36766209544905afd65ec9cedc4a19 200 SUPERFAMILY SSF58014 46 144 3.53E-28 T 11-11-2016 vm_RS10850 2b36766209544905afd65ec9cedc4a19 200 Pfam PF01025 GrpE 39 200 1.8E-54 T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 vm_RS10850 2b36766209544905afd65ec9cedc4a19 200 Hamap MF_01151 Protein GrpE [grpE]. 2 200 22.252 T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 vm_RS10850 2b36766209544905afd65ec9cedc4a19 200 ProSitePatterns PS01071 grpE protein signature. 155 198 - T 11-11-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 vm_RS10850 2b36766209544905afd65ec9cedc4a19 200 Gene3D G3DSA:2.30.22.10 144 200 6.1E-27 T 11-11-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 vm_RS06585 39946501e147c131d1c7a09baa41e0c2 396 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 7 388 3.7E-115 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 vm_RS06585 39946501e147c131d1c7a09baa41e0c2 396 TIGRFAM TIGR01324 cysta_beta_ly_B: cystathionine beta-lyase 7 389 1.4E-171 T 11-11-2016 IPR006233 Cystathionine beta-lyase, bacterial GO:0004121|GO:0005737|GO:0006520 KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8|MetaCyc: PWY-6936 vm_RS06585 39946501e147c131d1c7a09baa41e0c2 396 SUPERFAMILY SSF53383 21 388 7.31E-100 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS06585 39946501e147c131d1c7a09baa41e0c2 396 PIRSF PIRSF001434 1 391 3.5E-123 T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 vm_RS06585 39946501e147c131d1c7a09baa41e0c2 396 Gene3D G3DSA:3.90.1150.10 256 389 2.3E-36 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS06585 39946501e147c131d1c7a09baa41e0c2 396 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 199 213 - T 11-11-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 vm_RS06585 39946501e147c131d1c7a09baa41e0c2 396 Gene3D G3DSA:3.40.640.10 6 255 1.7E-80 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS09905 363f3b61c9ef0a00f3e122d231db0dc6 155 SMART SM00226 2 148 7.0E-35 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily vm_RS09905 363f3b61c9ef0a00f3e122d231db0dc6 155 Gene3D G3DSA:3.40.50.270 1 149 7.0E-50 T 11-11-2016 vm_RS09905 363f3b61c9ef0a00f3e122d231db0dc6 155 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 4 146 2.0E-35 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily vm_RS09905 363f3b61c9ef0a00f3e122d231db0dc6 155 SUPERFAMILY SSF52788 1 149 7.33E-47 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily vm_RS09905 363f3b61c9ef0a00f3e122d231db0dc6 155 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 120 135 1.4E-21 T 11-11-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 vm_RS09905 363f3b61c9ef0a00f3e122d231db0dc6 155 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 4 21 1.4E-21 T 11-11-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 vm_RS09905 363f3b61c9ef0a00f3e122d231db0dc6 155 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 45 61 1.4E-21 T 11-11-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 vm_RS09905 363f3b61c9ef0a00f3e122d231db0dc6 155 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 79 94 1.4E-21 T 11-11-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 vm_RS08095 ecca8d7079621c46f52cc50b2d6133a6 340 SUPERFAMILY SSF56529 76 334 2.75E-58 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 vm_RS08095 ecca8d7079621c46f52cc50b2d6133a6 340 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 80 332 1.1E-45 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 vm_RS08095 ecca8d7079621c46f52cc50b2d6133a6 340 Gene3D G3DSA:3.90.850.10 68 269 1.8E-43 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 vm_RS08095 ecca8d7079621c46f52cc50b2d6133a6 340 Gene3D G3DSA:3.90.850.10 305 321 1.8E-43 T 11-11-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 vm_RS06310 8a7ff624a6cb5486cd1b2bbab2c3a61d 484 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 5 479 7.6E-156 T 11-11-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 vm_RS06310 8a7ff624a6cb5486cd1b2bbab2c3a61d 484 SUPERFAMILY SSF53756 5 481 8.17E-115 T 11-11-2016 vm_RS06310 8a7ff624a6cb5486cd1b2bbab2c3a61d 484 Hamap MF_00484 Glycogen synthase [glgA]. 4 481 41.202 T 11-11-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 vm_RS06310 8a7ff624a6cb5486cd1b2bbab2c3a61d 484 Pfam PF00534 Glycosyl transferases group 1 300 443 2.7E-14 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 vm_RS06310 8a7ff624a6cb5486cd1b2bbab2c3a61d 484 Pfam PF08323 Starch synthase catalytic domain 5 235 1.2E-67 T 11-11-2016 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 vm_RS06310 8a7ff624a6cb5486cd1b2bbab2c3a61d 484 Gene3D G3DSA:3.40.50.2000 254 463 1.1E-64 T 11-11-2016 vm_RS00485 69f7e7631f9f6283b9957aca6a073ebc 255 SUPERFAMILY SSF51556 1 254 1.67E-79 T 11-11-2016 IPR032466 Metal-dependent hydrolase vm_RS00485 69f7e7631f9f6283b9957aca6a073ebc 255 Pfam PF01026 TatD related DNase 2 252 2.8E-66 T 11-11-2016 IPR001130 TatD family GO:0016788 vm_RS00485 69f7e7631f9f6283b9957aca6a073ebc 255 PIRSF PIRSF005902 1 255 3.1E-70 T 11-11-2016 IPR001130 TatD family GO:0016788 vm_RS00485 69f7e7631f9f6283b9957aca6a073ebc 255 Gene3D G3DSA:3.20.20.140 1 254 1.7E-79 T 11-11-2016 vm_RS00485 69f7e7631f9f6283b9957aca6a073ebc 255 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 1 252 1.2E-71 T 11-11-2016 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 vm_RS09845 18b314f95310fd1a08bb4051b27a3656 181 Pfam PF00156 Phosphoribosyl transferase domain 30 154 5.3E-15 T 11-11-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 vm_RS09845 18b314f95310fd1a08bb4051b27a3656 181 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 9 177 4.7E-74 T 11-11-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|Reactome: R-HSA-74217 vm_RS09845 18b314f95310fd1a08bb4051b27a3656 181 Gene3D G3DSA:3.40.50.2020 5 179 5.6E-69 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS09845 18b314f95310fd1a08bb4051b27a3656 181 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 9 178 38.352 T 11-11-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|Reactome: R-HSA-74217 vm_RS09845 18b314f95310fd1a08bb4051b27a3656 181 SUPERFAMILY SSF53271 11 178 3.69E-52 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS13260 f34616f65ce607c8bdd4423f95019744 854 Pfam PF11874 Domain of unknown function (DUF3394) 673 852 3.0E-68 T 11-11-2016 IPR021814 Protein of unknown function DUF3394 vm_RS13260 f34616f65ce607c8bdd4423f95019744 854 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 33 727 4.3E-210 T 11-11-2016 IPR011853 TRAP transporter, 4TM/12TM fusion protein vm_RS13260 f34616f65ce607c8bdd4423f95019744 854 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 134 669 2.3E-77 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit vm_RS06560 8b2f873e2d0e09dd9b5db99fa1e30b5b 222 Pfam PF04012 PspA/IM30 family 2 218 2.4E-62 T 11-11-2016 IPR007157 PspA/IM30 vm_RS06560 8b2f873e2d0e09dd9b5db99fa1e30b5b 222 TIGRFAM TIGR02977 phageshock_pspA: phage shock protein A 1 219 6.6E-95 T 11-11-2016 IPR014319 Phage shock protein, PspA vm_RS07830 ae1a82201efde860f0c40dce57cf3dba 161 SUPERFAMILY SSF52402 5 157 2.09E-29 T 11-11-2016 vm_RS07830 ae1a82201efde860f0c40dce57cf3dba 161 Pfam PF00582 Universal stress protein family 6 157 1.5E-24 T 11-11-2016 IPR006016 UspA GO:0006950 vm_RS07830 ae1a82201efde860f0c40dce57cf3dba 161 Gene3D G3DSA:3.40.50.620 5 157 3.3E-32 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS07830 ae1a82201efde860f0c40dce57cf3dba 161 PRINTS PR01438 Universal stress protein signature 5 23 1.8E-10 T 11-11-2016 IPR006015 Universal stress protein A vm_RS07830 ae1a82201efde860f0c40dce57cf3dba 161 PRINTS PR01438 Universal stress protein signature 117 129 1.8E-10 T 11-11-2016 IPR006015 Universal stress protein A vm_RS07830 ae1a82201efde860f0c40dce57cf3dba 161 PRINTS PR01438 Universal stress protein signature 135 157 1.8E-10 T 11-11-2016 IPR006015 Universal stress protein A vm_RS08530 27aae17eb0cbd1332c738ff8a80ed6a7 327 SMART SM00450 113 214 5.1E-21 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS08530 27aae17eb0cbd1332c738ff8a80ed6a7 327 SUPERFAMILY SSF52821 94 237 2.47E-30 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS08530 27aae17eb0cbd1332c738ff8a80ed6a7 327 Gene3D G3DSA:3.40.250.10 90 226 8.0E-40 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS08530 27aae17eb0cbd1332c738ff8a80ed6a7 327 Pfam PF00581 Rhodanese-like domain 119 210 4.1E-8 T 11-11-2016 IPR001763 Rhodanese-like domain vm_RS08530 27aae17eb0cbd1332c738ff8a80ed6a7 327 Hamap MF_00469 UPF0176 protein YceA [yceA]. 2 254 44.844 T 11-11-2016 IPR020936 Uncharacterised protein family UPF0176 vm_RS04635 3a46e70f2d912409ef2198ba94a9f34a 329 PIRSF PIRSF020479 4 329 7.8E-133 T 11-11-2016 IPR014506 Uncharacterised conserved protein UCP020479, signal transduction CheW-like vm_RS04635 3a46e70f2d912409ef2198ba94a9f34a 329 Pfam PF01584 CheW-like domain 185 317 2.3E-14 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS04635 3a46e70f2d912409ef2198ba94a9f34a 329 SUPERFAMILY SSF50341 183 317 9.94E-14 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS04635 3a46e70f2d912409ef2198ba94a9f34a 329 SMART SM00260 181 315 0.0017 T 11-11-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 vm_RS13440 8699ce039c80f34a14b4d6fd62dd69bf 162 PIRSF PIRSF018472 1 162 5.0E-43 T 11-11-2016 IPR026034 Cell shape-determining protein MreD, proteobacterial type vm_RS13440 8699ce039c80f34a14b4d6fd62dd69bf 162 Pfam PF04093 rod shape-determining protein MreD 7 154 4.3E-44 T 11-11-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 vm_RS13440 8699ce039c80f34a14b4d6fd62dd69bf 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 9 154 2.3E-36 T 11-11-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 vm_RS06615 72746cf68d1c912bdefd3a59afb2d621 566 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 368 536 2.5E-10 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS06615 72746cf68d1c912bdefd3a59afb2d621 566 Gene3D G3DSA:1.10.3720.10 7 275 1.4E-20 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS06615 72746cf68d1c912bdefd3a59afb2d621 566 Gene3D G3DSA:1.10.3720.10 302 546 5.1E-23 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS06615 72746cf68d1c912bdefd3a59afb2d621 566 SUPERFAMILY SSF161098 5 273 1.01E-22 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS06615 72746cf68d1c912bdefd3a59afb2d621 566 SUPERFAMILY SSF161098 300 538 2.22E-26 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS09315 8524d9280852dd6fd7965fa12861e86c 198 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 28 185 4.9E-55 T 11-11-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like vm_RS09315 8524d9280852dd6fd7965fa12861e86c 198 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 5 196 30.726 T 11-11-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 vm_RS09315 8524d9280852dd6fd7965fa12861e86c 198 SUPERFAMILY SSF89392 20 197 5.1E-52 T 11-11-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX vm_RS09315 8524d9280852dd6fd7965fa12861e86c 198 Gene3D G3DSA:2.50.20.10 20 197 1.7E-52 T 11-11-2016 vm_RS09315 8524d9280852dd6fd7965fa12861e86c 198 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 5 197 3.1E-57 T 11-11-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 Gene3D G3DSA:3.30.460.10 178 324 1.5E-45 T 11-11-2016 vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 Gene3D G3DSA:3.30.70.260 630 695 5.5E-10 T 11-11-2016 vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 Pfam PF13291 ACT domain 626 702 4.2E-16 T 11-11-2016 IPR002912 ACT domain GO:0008152|GO:0016597 vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 SMART SM00954 235 345 6.9E-57 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 Pfam PF13328 HD domain 28 175 3.1E-53 T 11-11-2016 IPR003607 HD/PDEase domain vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 SUPERFAMILY SSF55021 630 702 1.95E-8 T 11-11-2016 vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 27 702 9.3E-272 T 11-11-2016 IPR004811 RelA/SpoT family GO:0015969 vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 SMART SM00471 41 153 3.5E-11 T 11-11-2016 IPR003607 HD/PDEase domain vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 SUPERFAMILY SSF81301 180 393 4.58E-59 T 11-11-2016 vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 Pfam PF02824 TGS domain 389 447 1.7E-19 T 11-11-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 1.1E-34 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 SUPERFAMILY SSF109604 3 190 1.98E-74 T 11-11-2016 vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 SUPERFAMILY SSF81271 376 448 1.05E-20 T 11-11-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 vm_RS01155 c348fa8dd73ac4d7efe2e3154623305a 705 Gene3D G3DSA:3.10.20.30 388 448 8.1E-20 T 11-11-2016 IPR012675 Beta-grasp domain vm_RS11100 d05cf610e1d9b0e5c78816fa2ed44e58 66 ProDom PD027295 GP38 FLUMU BACTERIOPHAGE MU-LIKE ECS4978 SB12 PHAGE ORF10 PROPHAGE 10 47 0.003 T 11-11-2016 IPR024400 Protein of unknown function DUF2635 vm_RS11100 d05cf610e1d9b0e5c78816fa2ed44e58 66 Pfam PF10948 Protein of unknown function (DUF2635) 8 52 2.3E-16 T 11-11-2016 IPR024400 Protein of unknown function DUF2635 vm_RS01400 d05cf610e1d9b0e5c78816fa2ed44e58 66 ProDom PD027295 GP38 FLUMU BACTERIOPHAGE MU-LIKE ECS4978 SB12 PHAGE ORF10 PROPHAGE 10 47 0.003 T 11-11-2016 IPR024400 Protein of unknown function DUF2635 vm_RS01400 d05cf610e1d9b0e5c78816fa2ed44e58 66 Pfam PF10948 Protein of unknown function (DUF2635) 8 52 2.3E-16 T 11-11-2016 IPR024400 Protein of unknown function DUF2635 vm_RS03430 96092e57946277c93782fc5bc94b5d56 376 PIRSF PIRSF037565 1 376 3.0E-171 T 11-11-2016 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS03430 96092e57946277c93782fc5bc94b5d56 376 Pfam PF05175 Methyltransferase small domain 200 372 2.6E-51 T 11-11-2016 IPR007848 Methyltransferase small domain GO:0008168 vm_RS03430 96092e57946277c93782fc5bc94b5d56 376 SUPERFAMILY SSF53335 197 351 4.03E-24 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS03430 96092e57946277c93782fc5bc94b5d56 376 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 302 308 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 vm_RS03430 96092e57946277c93782fc5bc94b5d56 376 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 2 375 49.159 T 11-11-2016 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS03430 96092e57946277c93782fc5bc94b5d56 376 Gene3D G3DSA:3.40.50.150 201 368 4.1E-20 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS02960 4e7ca828b9d7c9a60bbf5cf3ef9c5c79 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 6.3E-6 T 11-11-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 vm_RS02960 4e7ca828b9d7c9a60bbf5cf3ef9c5c79 360 Pfam PF00953 Glycosyl transferase family 4 99 283 1.5E-36 T 11-11-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 vm_RS02960 4e7ca828b9d7c9a60bbf5cf3ef9c5c79 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 11-11-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 vm_RS02960 4e7ca828b9d7c9a60bbf5cf3ef9c5c79 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 25.344 T 11-11-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 vm_RS02960 4e7ca828b9d7c9a60bbf5cf3ef9c5c79 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 11-11-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 vm_RS02960 4e7ca828b9d7c9a60bbf5cf3ef9c5c79 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 37 360 2.4E-155 T 11-11-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 vm_RS01175 654f04979a99250b4c0058dc9b69e3ef 567 Pfam PF00474 Sodium:solute symporter family 373 489 3.5E-18 T 11-11-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 vm_RS01175 654f04979a99250b4c0058dc9b69e3ef 567 Pfam PF00474 Sodium:solute symporter family 33 299 8.7E-33 T 11-11-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 vm_RS01175 654f04979a99250b4c0058dc9b69e3ef 567 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 471 491 - T 11-11-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 vm_RS01175 654f04979a99250b4c0058dc9b69e3ef 567 TIGRFAM TIGR03648 Na_symport_lg: probable sodium:solute symporter, VC_2705 subfamily 8 558 2.9E-263 T 11-11-2016 IPR019899 Sodium/solute symporter, VC2705 subfamily vm_RS01725 0c4308a5e3decea9e7416ecaeaf2edb3 262 Hamap MF_00082_B Acetylglutamate kinase [argB]. 5 262 26.524 T 11-11-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 vm_RS01725 0c4308a5e3decea9e7416ecaeaf2edb3 262 Gene3D G3DSA:3.40.1160.10 9 260 2.2E-75 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS01725 0c4308a5e3decea9e7416ecaeaf2edb3 262 SUPERFAMILY SSF53633 9 262 2.09E-58 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS01725 0c4308a5e3decea9e7416ecaeaf2edb3 262 TIGRFAM TIGR00761 argB: acetylglutamate kinase 9 234 2.5E-64 T 11-11-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 vm_RS01725 0c4308a5e3decea9e7416ecaeaf2edb3 262 Pfam PF00696 Amino acid kinase family 9 238 5.1E-35 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS01725 0c4308a5e3decea9e7416ecaeaf2edb3 262 PIRSF PIRSF000728 1 261 4.0E-70 T 11-11-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400 vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 Pfam PF03705 CheR methyltransferase, all-alpha domain 9 57 1.3E-10 T 11-11-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 PRINTS PR00996 Glutamate methyltransferase family signature 30 43 6.8E-43 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 PRINTS PR00996 Glutamate methyltransferase family signature 212 226 6.8E-43 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 PRINTS PR00996 Glutamate methyltransferase family signature 143 159 6.8E-43 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 PRINTS PR00996 Glutamate methyltransferase family signature 106 126 6.8E-43 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 PRINTS PR00996 Glutamate methyltransferase family signature 231 254 6.8E-43 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 PRINTS PR00996 Glutamate methyltransferase family signature 69 81 6.8E-43 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 Gene3D G3DSA:3.40.50.150 75 270 1.8E-63 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 Gene3D G3DSA:1.10.155.10 3 74 7.7E-16 T 11-11-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 SUPERFAMILY SSF47757 3 75 2.22E-15 T 11-11-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 SMART SM00138 8 272 1.2E-132 T 11-11-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 SUPERFAMILY SSF53335 76 269 2.09E-49 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS03865 e3b3b6d9b08738fe9335e8cf59733d53 275 Pfam PF01739 CheR methyltransferase, SAM binding domain 76 269 9.5E-68 T 11-11-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal vm_RS00465 219199f04e13f5295422c2e0d9b7abf5 136 Pfam PF03748 Flagellar basal body-associated protein FliL 34 136 3.9E-19 T 11-11-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 vm_RS00200 1d7fee47bf3c16d4b520d33d38b019b2 188 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 67 102 4.8E-16 T 11-11-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 vm_RS00200 1d7fee47bf3c16d4b520d33d38b019b2 188 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 113 151 1.2E-14 T 11-11-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 vm_RS00200 1d7fee47bf3c16d4b520d33d38b019b2 188 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 154 178 0.81 T 11-11-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 vm_RS00200 1d7fee47bf3c16d4b520d33d38b019b2 188 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 22 57 4.3E-15 T 11-11-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 vm_RS00200 1d7fee47bf3c16d4b520d33d38b019b2 188 SUPERFAMILY SSF57783 66 101 4.59E-13 T 11-11-2016 vm_RS00200 1d7fee47bf3c16d4b520d33d38b019b2 188 Gene3D G3DSA:3.30.65.10 17 60 9.7E-15 T 11-11-2016 vm_RS00200 1d7fee47bf3c16d4b520d33d38b019b2 188 Gene3D G3DSA:3.30.65.10 67 101 5.2E-14 T 11-11-2016 vm_RS00200 1d7fee47bf3c16d4b520d33d38b019b2 188 Gene3D G3DSA:3.30.65.10 109 147 1.5E-7 T 11-11-2016 vm_RS00200 1d7fee47bf3c16d4b520d33d38b019b2 188 SUPERFAMILY SSF57783 16 64 1.87E-14 T 11-11-2016 vm_RS00200 1d7fee47bf3c16d4b520d33d38b019b2 188 SUPERFAMILY SSF57783 109 146 2.04E-5 T 11-11-2016 vm_RS02520 fbdd92cce74e240f0ad4c59649683800 210 SUPERFAMILY SSF48498 87 205 3.34E-7 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal vm_RS02520 fbdd92cce74e240f0ad4c59649683800 210 SUPERFAMILY SSF46689 7 83 1.54E-14 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS02520 fbdd92cce74e240f0ad4c59649683800 210 Gene3D G3DSA:1.10.357.10 4 205 3.6E-40 T 11-11-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 vm_RS02520 fbdd92cce74e240f0ad4c59649683800 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 2.2E-11 T 11-11-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 vm_RS02520 fbdd92cce74e240f0ad4c59649683800 210 Pfam PF14514 Transcriptional regulator, TetR, C-terminal 88 207 1.5E-6 T 11-11-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal vm_RS00950 da5b9e1ea4999f79c99ac35709bd1628 195 Pfam PF01106 NifU-like domain 114 179 5.3E-19 T 11-11-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 vm_RS00950 da5b9e1ea4999f79c99ac35709bd1628 195 Pfam PF01521 Iron-sulphur cluster biosynthesis 5 102 3.3E-12 T 11-11-2016 IPR000361 FeS cluster biogenesis vm_RS00950 da5b9e1ea4999f79c99ac35709bd1628 195 Gene3D G3DSA:2.60.300.12 4 100 5.2E-19 T 11-11-2016 IPR000361 FeS cluster biogenesis vm_RS00950 da5b9e1ea4999f79c99ac35709bd1628 195 SUPERFAMILY SSF89360 4 100 3.92E-22 T 11-11-2016 IPR000361 FeS cluster biogenesis vm_RS00950 da5b9e1ea4999f79c99ac35709bd1628 195 SUPERFAMILY SSF117916 98 187 1.37E-22 T 11-11-2016 vm_RS00950 da5b9e1ea4999f79c99ac35709bd1628 195 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 122 181 2.0E-27 T 11-11-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 vm_RS00950 da5b9e1ea4999f79c99ac35709bd1628 195 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 5 195 2.4E-95 T 11-11-2016 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 vm_RS00950 da5b9e1ea4999f79c99ac35709bd1628 195 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 4 195 44.682 T 11-11-2016 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 vm_RS02635 97c913fb7b12c61b9b811127340c4a1c 321 Pfam PF17188 MucB/RseB C-terminal domain 217 311 3.2E-28 T 11-11-2016 IPR033436 MucB/RseB, C-terminal vm_RS02635 97c913fb7b12c61b9b811127340c4a1c 321 Pfam PF03888 MucB/RseB N-terminal domain 25 205 3.2E-59 T 11-11-2016 IPR033434 MucB/RseB, N-terminal vm_RS02635 97c913fb7b12c61b9b811127340c4a1c 321 PIRSF PIRSF005427 1 316 2.5E-86 T 11-11-2016 IPR005588 MucB/RseB vm_RS02635 97c913fb7b12c61b9b811127340c4a1c 321 Gene3D G3DSA:2.50.20.10 119 182 4.0E-9 T 11-11-2016 vm_RS12755 6d4a79a5d823bdd02dbbfb3b3b2eb2ba 376 Gene3D G3DSA:3.40.50.2300 177 324 3.0E-20 T 11-11-2016 vm_RS12755 6d4a79a5d823bdd02dbbfb3b3b2eb2ba 376 Gene3D G3DSA:3.40.50.2300 102 176 6.1E-10 T 11-11-2016 vm_RS12755 6d4a79a5d823bdd02dbbfb3b3b2eb2ba 376 Pfam PF04392 ABC transporter substrate binding protein 104 355 1.4E-17 T 11-11-2016 IPR007487 ABC transporter, substrate-binding protein vm_RS00940 04d14fdbd13f3981cb0b5fe5c084180a 275 Pfam PF00459 Inositol monophosphatase family 14 253 1.5E-51 T 11-11-2016 IPR000760 Inositol monophosphatase GO:0046854 vm_RS00940 04d14fdbd13f3981cb0b5fe5c084180a 275 Gene3D G3DSA:3.40.190.80 164 262 1.2E-35 T 11-11-2016 vm_RS00940 04d14fdbd13f3981cb0b5fe5c084180a 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 65 81 6.4E-5 T 11-11-2016 IPR000760 Inositol monophosphatase GO:0046854 vm_RS00940 04d14fdbd13f3981cb0b5fe5c084180a 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 89 105 6.4E-5 T 11-11-2016 IPR000760 Inositol monophosphatase GO:0046854 vm_RS00940 04d14fdbd13f3981cb0b5fe5c084180a 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 43 63 6.4E-5 T 11-11-2016 IPR000760 Inositol monophosphatase GO:0046854 vm_RS00940 04d14fdbd13f3981cb0b5fe5c084180a 275 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 10 260 8.0E-112 T 11-11-2016 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial GO:0000287|GO:0016020 KEGG: 00920+3.1.3.7 vm_RS00940 04d14fdbd13f3981cb0b5fe5c084180a 275 SUPERFAMILY SSF56655 6 273 2.36E-78 T 11-11-2016 vm_RS00940 04d14fdbd13f3981cb0b5fe5c084180a 275 Gene3D G3DSA:3.30.540.10 6 163 1.6E-45 T 11-11-2016 vm_RS11755 dc2b86d29c09e121c2708acf3da06ab1 144 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 5 140 4.7E-13 T 11-11-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 vm_RS11755 dc2b86d29c09e121c2708acf3da06ab1 144 SUPERFAMILY SSF54534 4 143 6.29E-39 T 11-11-2016 vm_RS11755 dc2b86d29c09e121c2708acf3da06ab1 144 Gene3D G3DSA:3.10.50.40 5 79 5.1E-19 T 11-11-2016 vm_RS11755 dc2b86d29c09e121c2708acf3da06ab1 144 Gene3D G3DSA:3.10.50.40 130 144 5.1E-19 T 11-11-2016 vm_RS00315 9aee3c8df078317daa6ae1e401729dc9 597 Gene3D G3DSA:3.40.350.10 5 129 6.9E-20 T 11-11-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal vm_RS00315 9aee3c8df078317daa6ae1e401729dc9 597 Pfam PF16188 C-terminal region of peptidase_M24 534 594 1.8E-22 T 11-11-2016 IPR032416 Peptidase M24, C-terminal domain vm_RS00315 9aee3c8df078317daa6ae1e401729dc9 597 Pfam PF01321 Creatinase/Prolidase N-terminal domain 8 137 4.6E-18 T 11-11-2016 IPR000587 Creatinase, N-terminal GO:0016787 vm_RS00315 9aee3c8df078317daa6ae1e401729dc9 597 Pfam PF16189 Creatinase/Prolidase N-terminal domain 148 306 1.1E-33 T 11-11-2016 vm_RS00315 9aee3c8df078317daa6ae1e401729dc9 597 SUPERFAMILY SSF55920 303 559 2.88E-58 T 11-11-2016 IPR000994 Peptidase M24, structural domain vm_RS00315 9aee3c8df078317daa6ae1e401729dc9 597 Pfam PF00557 Metallopeptidase family M24 309 525 1.9E-47 T 11-11-2016 IPR000994 Peptidase M24, structural domain vm_RS00315 9aee3c8df078317daa6ae1e401729dc9 597 Gene3D G3DSA:3.90.230.10 301 560 9.9E-63 T 11-11-2016 IPR000994 Peptidase M24, structural domain vm_RS00315 9aee3c8df078317daa6ae1e401729dc9 597 SUPERFAMILY SSF53092 7 130 1.74E-14 T 11-11-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal vm_RS12920 80f795ecd2d58cb07ba205923b3c0435 586 SUPERFAMILY SSF55729 312 452 4.08E-22 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS12920 80f795ecd2d58cb07ba205923b3c0435 586 Pfam PF13444 Acetyltransferase (GNAT) domain 329 430 3.0E-21 T 11-11-2016 vm_RS12920 80f795ecd2d58cb07ba205923b3c0435 586 SUPERFAMILY SSF69593 61 248 1.57E-7 T 11-11-2016 vm_RS12920 80f795ecd2d58cb07ba205923b3c0435 586 Pfam PF01553 Acyltransferase 66 196 2.1E-5 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 vm_RS12920 80f795ecd2d58cb07ba205923b3c0435 586 SMART SM00563 75 199 1.8E-12 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 vm_RS09240 d1aefb3066d12c801bb264b680fc2140 179 Pfam PF11086 Protein of unknown function (DUF2878) 4 149 3.4E-30 T 11-11-2016 IPR021306 Protein of unknown function DUF2878 vm_RS14990 7cb8350f0acd04a459cdebb9f9bdcc8f 478 Pfam PF06122 Conjugative relaxosome accessory transposon protein 35 401 2.4E-93 T 11-11-2016 IPR010927 Type IV conjugative transfer system protein TraH vm_RS17725 fb82d21293fd220475abe5e9922b45fc 287 Pfam PF00149 Calcineurin-like phosphoesterase 12 230 7.2E-15 T 11-11-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 vm_RS17725 fb82d21293fd220475abe5e9922b45fc 287 PRINTS PR01607 Apyrase family signature 186 203 2.6E-14 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS17725 fb82d21293fd220475abe5e9922b45fc 287 PRINTS PR01607 Apyrase family signature 213 236 2.6E-14 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS17725 fb82d21293fd220475abe5e9922b45fc 287 PRINTS PR01607 Apyrase family signature 240 260 2.6E-14 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS17725 fb82d21293fd220475abe5e9922b45fc 287 PRINTS PR01607 Apyrase family signature 9 27 2.6E-14 T 11-11-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS17725 fb82d21293fd220475abe5e9922b45fc 287 ProSitePatterns PS00786 5'-nucleotidase signature 2. 90 101 - T 11-11-2016 IPR006146 5'-Nucleotidase, conserved site GO:0000166|GO:0016788|GO:0046872 Reactome: R-HSA-73621|Reactome: R-HSA-74259 vm_RS17725 fb82d21293fd220475abe5e9922b45fc 287 SUPERFAMILY SSF56300 3 285 3.47E-72 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS17725 fb82d21293fd220475abe5e9922b45fc 287 Gene3D G3DSA:3.60.21.10 6 286 3.4E-78 T 11-11-2016 IPR029052 Metallo-dependent phosphatase-like vm_RS11465 36ac5ac3d07fef0f4bd11e8194d64ac0 111 SMART SM01323 19 103 4.7E-38 T 11-11-2016 IPR003849 Preprotein translocase YajC vm_RS11465 36ac5ac3d07fef0f4bd11e8194d64ac0 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 21 41 1.5E-15 T 11-11-2016 IPR003849 Preprotein translocase YajC vm_RS11465 36ac5ac3d07fef0f4bd11e8194d64ac0 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 59 77 1.5E-15 T 11-11-2016 IPR003849 Preprotein translocase YajC vm_RS11465 36ac5ac3d07fef0f4bd11e8194d64ac0 111 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 21 103 2.8E-30 T 11-11-2016 IPR003849 Preprotein translocase YajC vm_RS11465 36ac5ac3d07fef0f4bd11e8194d64ac0 111 Pfam PF02699 Preprotein translocase subunit 23 100 4.5E-26 T 11-11-2016 IPR003849 Preprotein translocase YajC vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 SUPERFAMILY SSF55021 283 380 5.55E-27 T 11-11-2016 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 Gene3D G3DSA:3.30.70.260 298 381 2.1E-28 T 11-11-2016 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 Pfam PF01817 Chorismate mutase type II 12 91 2.5E-18 T 11-11-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 SUPERFAMILY SSF53850 108 294 3.15E-55 T 11-11-2016 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 SMART SM00830 12 93 9.3E-24 T 11-11-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 Gene3D G3DSA:3.40.190.10 197 276 4.9E-26 T 11-11-2016 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 328 335 - T 11-11-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 264 286 - T 11-11-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 Gene3D G3DSA:3.40.190.10 110 196 1.6E-31 T 11-11-2016 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 Gene3D G3DSA:1.20.59.10 4 109 1.9E-42 T 11-11-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 PIRSF PIRSF001500 1 383 3.2E-146 T 11-11-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 SUPERFAMILY SSF48600 7 95 1.83E-20 T 11-11-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 TIGRFAM TIGR01797 CM_P_1: chorismate mutase 8 91 1.9E-27 T 11-11-2016 IPR010952 Chorismate mutase, gammaproteobacteria GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626 vm_RS11660 177739e5d698fe701801f1d3f6a5417b 391 Pfam PF00800 Prephenate dehydratase 109 290 1.8E-58 T 11-11-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432 vm_RS03675 7ed4a51a4a3e7dd785a63b2927f1c65f 206 Pfam PF01351 Ribonuclease HII 22 196 5.8E-39 T 11-11-2016 IPR024567 Ribonuclease HII/HIII domain vm_RS03675 7ed4a51a4a3e7dd785a63b2927f1c65f 206 Hamap MF_00052_B Ribonuclease HII [rnhB]. 20 199 37.986 T 11-11-2016 IPR022898 Ribonuclease HII GO:0004523 vm_RS03675 7ed4a51a4a3e7dd785a63b2927f1c65f 206 SUPERFAMILY SSF53098 15 204 2.73E-70 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS03675 7ed4a51a4a3e7dd785a63b2927f1c65f 206 Gene3D G3DSA:3.30.420.10 20 161 2.6E-49 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS12585 8db37af669cd78ef5a8b3ed3eb12b63e 270 SUPERFAMILY SSF53474 4 266 1.93E-59 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS12585 8db37af669cd78ef5a8b3ed3eb12b63e 270 PRINTS PR00412 Epoxide hydrolase signature 45 60 5.2E-9 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS12585 8db37af669cd78ef5a8b3ed3eb12b63e 270 PRINTS PR00412 Epoxide hydrolase signature 104 117 5.2E-9 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS12585 8db37af669cd78ef5a8b3ed3eb12b63e 270 PRINTS PR00412 Epoxide hydrolase signature 243 265 5.2E-9 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS12585 8db37af669cd78ef5a8b3ed3eb12b63e 270 Gene3D G3DSA:3.40.50.1820 6 267 5.4E-57 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS12585 8db37af669cd78ef5a8b3ed3eb12b63e 270 Pfam PF12697 Alpha/beta hydrolase family 23 258 6.4E-17 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 vm_RS12585 8db37af669cd78ef5a8b3ed3eb12b63e 270 PRINTS PR00111 Alpha/beta hydrolase fold signature 45 60 1.5E-8 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 vm_RS12585 8db37af669cd78ef5a8b3ed3eb12b63e 270 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 1.5E-8 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 vm_RS12585 8db37af669cd78ef5a8b3ed3eb12b63e 270 PRINTS PR00111 Alpha/beta hydrolase fold signature 90 103 1.5E-8 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 vm_RS12585 8db37af669cd78ef5a8b3ed3eb12b63e 270 PRINTS PR00111 Alpha/beta hydrolase fold signature 212 226 1.5E-8 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 vm_RS09790 a5825003f5380ac78028a26a3c6dbbec 144 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 33 136 4.5E-41 T 11-11-2016 vm_RS07130 0d33b3e3dccd1a7b421dd3905cc55b8e 377 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 45 257 1.7E-16 T 11-11-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain vm_RS07130 0d33b3e3dccd1a7b421dd3905cc55b8e 377 Gene3D G3DSA:2.40.50.100 59 91 6.4E-13 T 11-11-2016 vm_RS07130 0d33b3e3dccd1a7b421dd3905cc55b8e 377 Gene3D G3DSA:2.40.50.100 175 197 6.4E-13 T 11-11-2016 vm_RS07130 0d33b3e3dccd1a7b421dd3905cc55b8e 377 SUPERFAMILY SSF111369 50 233 8.11E-16 T 11-11-2016 vm_RS07130 0d33b3e3dccd1a7b421dd3905cc55b8e 377 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 35 367 1.2E-32 T 11-11-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 Pfam PF00813 FliP family 102 293 5.1E-79 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 226 246 5.4E-66 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 119 139 5.4E-66 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 100 119 5.4E-66 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 271 296 5.4E-66 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 139 158 5.4E-66 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 247 268 5.4E-66 T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 158 170 4.3E-18 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 98 107 4.3E-18 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 170 184 4.3E-18 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 287 297 4.3E-18 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 219 231 4.3E-18 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 198 210 4.3E-18 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 274 286 - T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 226 241 - T 11-11-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 vm_RS04335 b90eef62d4634fa5805bb7dc2f947686 299 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 102 297 1.0E-82 T 11-11-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 vm_RS04250 509c335b7faaead2067ab9f3ef8da566 666 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 430 655 4.2E-54 T 11-11-2016 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 vm_RS04250 509c335b7faaead2067ab9f3ef8da566 666 Pfam PF07196 Flagellin hook IN motif 125 178 2.8E-8 T 11-11-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 vm_RS04250 509c335b7faaead2067ab9f3ef8da566 666 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 10 107 7.4E-22 T 11-11-2016 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 vm_RS10770 b2680da64c1e655414ced95ef4216690 67 ProDom PD054643 UPF0253 YAEP CYTOPLASMIC VP2335 YPO1064.1/Y3113/YP2785 VC0872 VV2574 PBPRA2947 VV11836 7 65 1.0E-14 T 11-11-2016 IPR009624 Uncharacterised protein family UPF0253 vm_RS10770 b2680da64c1e655414ced95ef4216690 67 Hamap MF_01064 UPF0253 protein YaeP [yaeP]. 1 67 26.513 T 11-11-2016 IPR009624 Uncharacterised protein family UPF0253 vm_RS10770 b2680da64c1e655414ced95ef4216690 67 Pfam PF06786 Uncharacterised protein family (UPF0253) 1 67 1.9E-33 T 11-11-2016 IPR009624 Uncharacterised protein family UPF0253 vm_RS12330 9ab4da21997cc0fbd155172e591a1471 147 Pfam PF06295 Protein of unknown function (DUF1043) 6 129 2.1E-45 T 11-11-2016 IPR009386 Protein of unknown function DUF1043 vm_RS12330 9ab4da21997cc0fbd155172e591a1471 147 PIRSF PIRSF006318 1 136 1.4E-52 T 11-11-2016 IPR009386 Protein of unknown function DUF1043 vm_RS02100 a023ab63ff9162c42a6a2c47702e1480 189 Pfam PF08525 Opacity-associated protein A N-terminal motif 36 62 2.4E-6 T 11-11-2016 IPR013731 Opacity-associated protein A, N-terminal vm_RS02100 a023ab63ff9162c42a6a2c47702e1480 189 Pfam PF04225 Opacity-associated protein A LysM-like domain 105 189 2.9E-38 T 11-11-2016 IPR007340 Opacity-associated protein A vm_RS20090 758d0674abf260d2819d002569f9b4bd 199 Pfam PF02706 Chain length determinant protein 5 126 2.5E-7 T 11-11-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 vm_RS09245 bf380674cc1b84e5f1ae0c8e50fed125 413 SUPERFAMILY SSF53335 45 366 1.82E-86 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS09245 bf380674cc1b84e5f1ae0c8e50fed125 413 Pfam PF02353 Mycolic acid cyclopropane synthetase 138 406 8.8E-84 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS09245 bf380674cc1b84e5f1ae0c8e50fed125 413 Gene3D G3DSA:3.40.50.150 134 411 5.6E-99 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS09245 bf380674cc1b84e5f1ae0c8e50fed125 413 PIRSF PIRSF003085 18 413 4.2E-123 T 11-11-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 vm_RS10825 dd52ecb64d768cda157ba236d2193758 196 PIRSF PIRSF004525 3 196 1.1E-15 T 11-11-2016 IPR016419 Prepilin peptidase-dependent protein B, predicted vm_RS00210 2594a9415a8a45169e29fae1b0ddb8b6 161 Gene3D G3DSA:3.40.50.7700 1 158 9.3E-75 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 vm_RS00210 2594a9415a8a45169e29fae1b0ddb8b6 161 PIRSF PIRSF001338 1 161 1.8E-68 T 11-11-2016 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 vm_RS00210 2594a9415a8a45169e29fae1b0ddb8b6 161 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 3 156 32.582 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 vm_RS00210 2594a9415a8a45169e29fae1b0ddb8b6 161 Pfam PF00731 AIR carboxylase 3 150 7.2E-65 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 vm_RS00210 2594a9415a8a45169e29fae1b0ddb8b6 161 SUPERFAMILY SSF52255 2 159 6.8E-67 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 vm_RS00210 2594a9415a8a45169e29fae1b0ddb8b6 161 SMART SM01001 1 152 9.2E-104 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 vm_RS00210 2594a9415a8a45169e29fae1b0ddb8b6 161 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 3 157 1.5E-68 T 11-11-2016 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 vm_RS13785 2606b180cea98a1711c7a77329e5f00a 131 Pfam PF02635 DsrE/DsrF-like family 6 131 4.8E-26 T 11-11-2016 IPR003787 Sulphur relay, DsrE/F-like protein vm_RS13785 2606b180cea98a1711c7a77329e5f00a 131 Gene3D G3DSA:3.40.1260.10 6 131 2.5E-27 T 11-11-2016 IPR027396 DsrEFH-like vm_RS13785 2606b180cea98a1711c7a77329e5f00a 131 SUPERFAMILY SSF75169 6 131 1.22E-34 T 11-11-2016 IPR027396 DsrEFH-like vm_RS13785 2606b180cea98a1711c7a77329e5f00a 131 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 5 131 6.3E-52 T 11-11-2016 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 vm_RS10120 47d444ff2e997bbf0abec6787b514b9e 441 Pfam PF13726 Na+-H+ antiporter family 2 88 9.8E-36 T 11-11-2016 IPR032813 Putative Na+/H+ antiporter, N-terminal vm_RS10120 47d444ff2e997bbf0abec6787b514b9e 441 PRINTS PR00173 Glutamate-aspartate symporter signature 20 40 9.2E-7 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS10120 47d444ff2e997bbf0abec6787b514b9e 441 PRINTS PR00173 Glutamate-aspartate symporter signature 374 393 9.2E-7 T 11-11-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 vm_RS10120 47d444ff2e997bbf0abec6787b514b9e 441 Pfam PF03553 Na+/H+ antiporter family 150 435 2.9E-76 T 11-11-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 vm_RS01170 fb21b9ddb919fc0ac8902c369cc180a5 223 Pfam PF02592 Putative vitamin uptake transporter 43 199 4.0E-38 T 11-11-2016 IPR003744 Protein of unknown function DUF165 vm_RS01170 fb21b9ddb919fc0ac8902c369cc180a5 223 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 15 204 1.9E-62 T 11-11-2016 IPR003744 Protein of unknown function DUF165 vm_RS06015 9f27ca4597cc6405b231c5b85e791e26 364 Pfam PF04245 37-kD nucleoid-associated bacterial protein 12 327 4.2E-15 T 11-11-2016 IPR007358 Nucleoid-associated protein NdpA GO:0009295 vm_RS07855 34d315db8fb12439549575caac1e55f3 398 SUPERFAMILY SSF52540 73 358 6.95E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07855 34d315db8fb12439549575caac1e55f3 398 SMART SM00490 257 338 1.1E-28 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS07855 34d315db8fb12439549575caac1e55f3 398 Gene3D G3DSA:3.40.50.300 218 370 1.7E-47 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07855 34d315db8fb12439549575caac1e55f3 398 Pfam PF00271 Helicase conserved C-terminal domain 232 337 1.5E-26 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS07855 34d315db8fb12439549575caac1e55f3 398 Pfam PF00270 DEAD/DEAH box helicase 25 195 4.4E-50 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 vm_RS07855 34d315db8fb12439549575caac1e55f3 398 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 11-11-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site vm_RS07855 34d315db8fb12439549575caac1e55f3 398 SMART SM00487 20 221 4.8E-62 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS07855 34d315db8fb12439549575caac1e55f3 398 Gene3D G3DSA:3.40.50.300 2 217 1.8E-76 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS07090 96acf32d28d568666bbb30d9a1ee2b56 72 Gene3D G3DSA:3.40.30.10 1 72 2.9E-27 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS07090 96acf32d28d568666bbb30d9a1ee2b56 72 SUPERFAMILY SSF52833 1 69 1.74E-18 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS07090 96acf32d28d568666bbb30d9a1ee2b56 72 Pfam PF00462 Glutaredoxin 3 61 1.1E-13 T 11-11-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 vm_RS07090 96acf32d28d568666bbb30d9a1ee2b56 72 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 72 5.6E-31 T 11-11-2016 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 vm_RS06265 6d538bc9f6c6f77ea7368b64215185a3 401 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 82 317 2.3E-111 T 11-11-2016 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 vm_RS06265 6d538bc9f6c6f77ea7368b64215185a3 401 Pfam PF07055 Enoyl reductase FAD binding domain 326 389 1.8E-29 T 11-11-2016 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 vm_RS06265 6d538bc9f6c6f77ea7368b64215185a3 401 Gene3D G3DSA:3.40.50.720 40 281 1.6E-5 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS06265 6d538bc9f6c6f77ea7368b64215185a3 401 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 1 395 56.519 T 11-11-2016 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 vm_RS06265 6d538bc9f6c6f77ea7368b64215185a3 401 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2 79 2.7E-37 T 11-11-2016 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 vm_RS08110 7bac2e06500647fb77f923c430b5bf5e 368 SUPERFAMILY SSF53187 7 177 1.39E-59 T 11-11-2016 vm_RS08110 7bac2e06500647fb77f923c430b5bf5e 368 SUPERFAMILY SSF53187 287 365 1.39E-59 T 11-11-2016 vm_RS08110 7bac2e06500647fb77f923c430b5bf5e 368 TIGRFAM TIGR01883 PepT-like: peptidase T-like protein 8 367 2.9E-185 T 11-11-2016 IPR010162 Peptidase M20B, peptidase T-like vm_RS08110 7bac2e06500647fb77f923c430b5bf5e 368 SUPERFAMILY SSF55031 178 289 5.36E-22 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain vm_RS08110 7bac2e06500647fb77f923c430b5bf5e 368 Pfam PF01546 Peptidase family M20/M25/M40 72 365 3.5E-21 T 11-11-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 vm_RS08110 7bac2e06500647fb77f923c430b5bf5e 368 Pfam PF07687 Peptidase dimerisation domain 185 273 6.1E-13 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain vm_RS08110 7bac2e06500647fb77f923c430b5bf5e 368 Gene3D G3DSA:3.30.70.360 178 282 9.1E-24 T 11-11-2016 IPR011650 Peptidase M20, dimerisation domain vm_RS08110 7bac2e06500647fb77f923c430b5bf5e 368 Gene3D G3DSA:3.40.630.10 4 177 3.4E-71 T 11-11-2016 vm_RS08110 7bac2e06500647fb77f923c430b5bf5e 368 Gene3D G3DSA:3.40.630.10 287 364 3.4E-71 T 11-11-2016 vm_RS06535 fb14c2e370678a02844e921e383496ab 331 SUPERFAMILY SSF52540 4 268 1.38E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06535 fb14c2e370678a02844e921e383496ab 331 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 305 1.2E-15 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 vm_RS06535 fb14c2e370678a02844e921e383496ab 331 Gene3D G3DSA:3.40.50.300 2 262 6.8E-56 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06535 fb14c2e370678a02844e921e383496ab 331 SMART SM00382 32 237 6.7E-4 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS06535 fb14c2e370678a02844e921e383496ab 331 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 1.7E-20 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 vm_RS06535 fb14c2e370678a02844e921e383496ab 331 Pfam PF00005 ABC transporter 24 187 2.8E-26 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS06985 7b8b3cb27a102368fe758cb692825f92 351 SUPERFAMILY SSF54197 6 179 7.05E-72 T 11-11-2016 IPR011146 HIT-like domain GO:0003824 vm_RS06985 7b8b3cb27a102368fe758cb692825f92 351 TIGRFAM TIGR00209 galT_1: galactose-1-phosphate uridylyltransferase 5 350 2.1E-186 T 11-11-2016 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 vm_RS06985 7b8b3cb27a102368fe758cb692825f92 351 ProSitePatterns PS00117 Galactose-1-phosphate uridyl transferase family 1 active site signature. 153 170 - T 11-11-2016 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 vm_RS06985 7b8b3cb27a102368fe758cb692825f92 351 Pfam PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain 188 350 3.4E-65 T 11-11-2016 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 vm_RS06985 7b8b3cb27a102368fe758cb692825f92 351 PIRSF PIRSF000808 2 345 7.3E-123 T 11-11-2016 IPR001937 Galactose-1-phosphate uridyl transferase, class I GO:0006012|GO:0008108|GO:0008270 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 vm_RS06985 7b8b3cb27a102368fe758cb692825f92 351 Gene3D G3DSA:3.30.428.10 46 177 1.4E-56 T 11-11-2016 IPR011146 HIT-like domain GO:0003824 vm_RS06985 7b8b3cb27a102368fe758cb692825f92 351 Gene3D G3DSA:3.30.428.10 178 349 2.9E-74 T 11-11-2016 IPR011146 HIT-like domain GO:0003824 vm_RS06985 7b8b3cb27a102368fe758cb692825f92 351 Pfam PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain 6 178 5.2E-68 T 11-11-2016 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal GO:0006012|GO:0008108 KEGG: 00052+2.7.7.12|KEGG: 00520+2.7.7.12|MetaCyc: PWY-6317|MetaCyc: PWY-6527|Reactome: R-HSA-5609978|Reactome: R-HSA-70370 vm_RS06985 7b8b3cb27a102368fe758cb692825f92 351 SUPERFAMILY SSF54197 181 349 3.23E-54 T 11-11-2016 IPR011146 HIT-like domain GO:0003824 vm_RS02180 600231c064f117be9188fa2902b3a6da 183 Pfam PF09695 Bacterial protein of unknown function (YtfJ_HI0045) 24 181 7.3E-77 T 11-11-2016 IPR006513 Conserved hypothetical protein CHP01626, YtfJ vm_RS02180 600231c064f117be9188fa2902b3a6da 183 TIGRFAM TIGR01626 ytfJ_HI0045: conserved hypothetical protein YtfJ-family, TIGR01626 1 182 4.8E-96 T 11-11-2016 IPR006513 Conserved hypothetical protein CHP01626, YtfJ vm_RS02180 600231c064f117be9188fa2902b3a6da 183 Gene3D G3DSA:3.40.30.10 114 176 9.8E-5 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS05540 acfeb69bac1046fa9a7e52006b4ee478 374 PIRSF PIRSF000183 1 371 1.1E-156 T 11-11-2016 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 vm_RS05540 acfeb69bac1046fa9a7e52006b4ee478 374 SUPERFAMILY SSF51735 137 303 3.12E-49 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS05540 acfeb69bac1046fa9a7e52006b4ee478 374 SMART SM01003 4 137 3.8E-79 T 11-11-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal vm_RS05540 acfeb69bac1046fa9a7e52006b4ee478 374 SUPERFAMILY SSF52283 305 360 1.19E-67 T 11-11-2016 vm_RS05540 acfeb69bac1046fa9a7e52006b4ee478 374 SUPERFAMILY SSF52283 1 137 1.19E-67 T 11-11-2016 vm_RS05540 acfeb69bac1046fa9a7e52006b4ee478 374 SMART SM01002 149 297 1.3E-87 T 11-11-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain vm_RS05540 acfeb69bac1046fa9a7e52006b4ee478 374 Gene3D G3DSA:3.40.50.1770 203 358 6.1E-30 T 11-11-2016 vm_RS05540 acfeb69bac1046fa9a7e52006b4ee478 374 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 137 3.6E-46 T 11-11-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal vm_RS05540 acfeb69bac1046fa9a7e52006b4ee478 374 Gene3D G3DSA:3.50.50.60 179 202 2.7E-7 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS05540 acfeb69bac1046fa9a7e52006b4ee478 374 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 141 353 9.0E-84 T 11-11-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain vm_RS05540 acfeb69bac1046fa9a7e52006b4ee478 374 TIGRFAM TIGR00518 alaDH: alanine dehydrogenase 1 370 2.5E-156 T 11-11-2016 IPR008141 Alanine dehydrogenase GO:0000286|GO:0042853 KEGG: 00250+1.4.1.1|KEGG: 00430+1.4.1.1 vm_RS05540 acfeb69bac1046fa9a7e52006b4ee478 374 Gene3D G3DSA:3.40.50.1770 3 178 3.5E-62 T 11-11-2016 vm_RS12745 460088f283298899522ff1c6136c4439 319 Gene3D G3DSA:2.60.200.20 5 102 1.9E-13 T 11-11-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 vm_RS12745 460088f283298899522ff1c6136c4439 319 Pfam PF00498 FHA domain 30 97 6.5E-11 T 11-11-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 vm_RS12745 460088f283298899522ff1c6136c4439 319 SUPERFAMILY SSF49879 19 111 1.76E-16 T 11-11-2016 IPR008984 SMAD/FHA domain GO:0005515 vm_RS09345 94a50a7738449a683488e55ebb827ddd 321 Gene3D G3DSA:3.40.50.2300 26 155 1.4E-59 T 11-11-2016 vm_RS09345 94a50a7738449a683488e55ebb827ddd 321 Gene3D G3DSA:3.40.50.2300 156 287 5.7E-47 T 11-11-2016 vm_RS09345 94a50a7738449a683488e55ebb827ddd 321 SUPERFAMILY SSF53822 43 275 6.56E-19 T 11-11-2016 IPR028082 Periplasmic binding protein-like I vm_RS09345 94a50a7738449a683488e55ebb827ddd 321 Pfam PF04392 ABC transporter substrate binding protein 29 320 5.3E-122 T 11-11-2016 IPR007487 ABC transporter, substrate-binding protein vm_RS03690 fc6b60cf7be00aa9e25d99a335b9b314 440 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 19 201 1.9E-53 T 11-11-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 vm_RS03690 fc6b60cf7be00aa9e25d99a335b9b314 440 Pfam PF11734 TilS substrate C-terminal domain 364 430 2.3E-22 T 11-11-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 vm_RS03690 fc6b60cf7be00aa9e25d99a335b9b314 440 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 362 408 2.0E-15 T 11-11-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 vm_RS03690 fc6b60cf7be00aa9e25d99a335b9b314 440 Pfam PF01171 PP-loop family 20 197 9.9E-59 T 11-11-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 vm_RS03690 fc6b60cf7be00aa9e25d99a335b9b314 440 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 9 308 22.539 T 11-11-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 vm_RS03690 fc6b60cf7be00aa9e25d99a335b9b314 440 SMART SM00977 362 431 3.7E-22 T 11-11-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 vm_RS03690 fc6b60cf7be00aa9e25d99a335b9b314 440 SUPERFAMILY SSF56037 320 433 5.23E-27 T 11-11-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Reactome: R-HSA-379716 vm_RS03690 fc6b60cf7be00aa9e25d99a335b9b314 440 SUPERFAMILY SSF52402 15 231 7.12E-61 T 11-11-2016 vm_RS03690 fc6b60cf7be00aa9e25d99a335b9b314 440 SUPERFAMILY SSF82829 232 315 7.98E-22 T 11-11-2016 vm_RS03690 fc6b60cf7be00aa9e25d99a335b9b314 440 Gene3D G3DSA:3.40.50.620 13 178 9.7E-15 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS03690 fc6b60cf7be00aa9e25d99a335b9b314 440 Pfam PF09179 TilS substrate binding domain 246 313 5.3E-19 T 11-11-2016 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 vm_RS03790 0de343bc673910feb6e27910bc11ddf3 288 Pfam PF01963 TraB family 22 276 2.8E-55 T 11-11-2016 IPR002816 Pheromone shutdown, TraB vm_RS12205 912c01a0a657997dc3ef0046e719574b 296 SUPERFAMILY SSF52374 3 282 9.29E-86 T 11-11-2016 vm_RS12205 912c01a0a657997dc3ef0046e719574b 296 Gene3D G3DSA:3.90.800.10 69 168 5.3E-19 T 11-11-2016 vm_RS12205 912c01a0a657997dc3ef0046e719574b 296 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 6 236 6.9E-44 T 11-11-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 vm_RS12205 912c01a0a657997dc3ef0046e719574b 296 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 3 288 39.8 T 11-11-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 vm_RS12205 912c01a0a657997dc3ef0046e719574b 296 PRINTS PR00987 Glutamyl-tRNA synthetase signature 35 48 5.6E-14 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS12205 912c01a0a657997dc3ef0046e719574b 296 PRINTS PR00987 Glutamyl-tRNA synthetase signature 20 31 5.6E-14 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS12205 912c01a0a657997dc3ef0046e719574b 296 PRINTS PR00987 Glutamyl-tRNA synthetase signature 184 192 5.6E-14 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS12205 912c01a0a657997dc3ef0046e719574b 296 PRINTS PR00987 Glutamyl-tRNA synthetase signature 6 18 5.6E-14 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS12205 912c01a0a657997dc3ef0046e719574b 296 PRINTS PR00987 Glutamyl-tRNA synthetase signature 168 178 5.6E-14 T 11-11-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 vm_RS12205 912c01a0a657997dc3ef0046e719574b 296 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 3 269 2.3E-112 T 11-11-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 vm_RS12205 912c01a0a657997dc3ef0046e719574b 296 Gene3D G3DSA:3.40.50.620 170 218 1.6E-38 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS12205 912c01a0a657997dc3ef0046e719574b 296 Gene3D G3DSA:3.40.50.620 3 68 1.6E-38 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS03470 f5d58879a298ae4ee44e81ad664ad4a5 334 PIRSF PIRSF006268 1 334 4.5E-96 T 11-11-2016 IPR024932 Flavin transferase ApbE GO:0017013 vm_RS03470 f5d58879a298ae4ee44e81ad664ad4a5 334 SUPERFAMILY SSF143631 23 332 1.13E-103 T 11-11-2016 IPR003374 ApbE-like domain vm_RS03470 f5d58879a298ae4ee44e81ad664ad4a5 334 Pfam PF02424 ApbE family 31 309 5.3E-85 T 11-11-2016 IPR024932 Flavin transferase ApbE GO:0017013 vm_RS07005 4ae8d324bdb2986c27ebc85585f30bd1 1526 SMART SM01276 1092 1395 7.3E-89 T 11-11-2016 IPR031161 Peptidase family M60 domain vm_RS07005 4ae8d324bdb2986c27ebc85585f30bd1 1526 Pfam PF13402 Peptidase M60, enhancin and enhancin-like 1086 1477 1.7E-57 T 11-11-2016 IPR031161 Peptidase family M60 domain vm_RS07005 4ae8d324bdb2986c27ebc85585f30bd1 1526 Pfam PF13322 Domain of unknown function (DUF4092) 398 571 1.0E-94 T 11-11-2016 IPR025385 Domain of unknown function DUF4092 vm_RS14585 9519a044b728e55b70fcf6e6aa212d4c 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 164 183 3.1E-62 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 vm_RS14585 9519a044b728e55b70fcf6e6aa212d4c 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 266 282 3.1E-62 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 vm_RS14585 9519a044b728e55b70fcf6e6aa212d4c 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 296 315 3.1E-62 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 vm_RS14585 9519a044b728e55b70fcf6e6aa212d4c 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 71 96 3.1E-62 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 vm_RS14585 9519a044b728e55b70fcf6e6aa212d4c 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 146 164 3.1E-62 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 vm_RS14585 9519a044b728e55b70fcf6e6aa212d4c 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 405 423 3.1E-62 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 vm_RS14585 9519a044b728e55b70fcf6e6aa212d4c 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 463 478 3.1E-62 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 vm_RS14585 9519a044b728e55b70fcf6e6aa212d4c 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 487 504 3.1E-62 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 vm_RS14585 9519a044b728e55b70fcf6e6aa212d4c 584 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 427 445 3.1E-62 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 vm_RS14585 9519a044b728e55b70fcf6e6aa212d4c 584 SUPERFAMILY SSF56235 40 583 5.02E-170 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS14585 9519a044b728e55b70fcf6e6aa212d4c 584 Pfam PF01019 Gamma-glutamyltranspeptidase 64 579 1.4E-162 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 vm_RS14585 9519a044b728e55b70fcf6e6aa212d4c 584 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 50 576 1.2E-139 T 11-11-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 vm_RS14350 a4d2641f840040b66ffcb0a97e09c115 196 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 101 136 3.3E-4 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS14350 a4d2641f840040b66ffcb0a97e09c115 196 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 51 75 3.8E-5 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS14350 a4d2641f840040b66ffcb0a97e09c115 196 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 15 49 1.2E-7 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS14350 a4d2641f840040b66ffcb0a97e09c115 196 SUPERFAMILY SSF51161 3 158 3.05E-42 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS14350 a4d2641f840040b66ffcb0a97e09c115 196 Gene3D G3DSA:2.160.10.10 4 155 1.8E-42 T 11-11-2016 vm_RS01440 894202fecb50d2a0e5a634984c5718b9 149 Pfam PF07409 Phage protein GP46 26 140 1.4E-37 T 11-11-2016 IPR010877 Bacteriophage Mu, Gp46 vm_RS11140 894202fecb50d2a0e5a634984c5718b9 149 Pfam PF07409 Phage protein GP46 26 140 1.4E-37 T 11-11-2016 IPR010877 Bacteriophage Mu, Gp46 vm_RS04235 e8feba387d129aacafdfcd26b98a55b9 377 Gene3D G3DSA:1.20.1330.10 55 171 4.4E-59 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS04235 e8feba387d129aacafdfcd26b98a55b9 377 Gene3D G3DSA:1.20.1330.10 279 332 4.4E-59 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS04235 e8feba387d129aacafdfcd26b98a55b9 377 PRINTS PR00207 Flagellin signature 37 54 2.5E-27 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS04235 e8feba387d129aacafdfcd26b98a55b9 377 PRINTS PR00207 Flagellin signature 111 134 2.5E-27 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS04235 e8feba387d129aacafdfcd26b98a55b9 377 PRINTS PR00207 Flagellin signature 76 95 2.5E-27 T 11-11-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 vm_RS04235 e8feba387d129aacafdfcd26b98a55b9 377 SUPERFAMILY SSF64518 1 376 3.01E-96 T 11-11-2016 vm_RS04235 e8feba387d129aacafdfcd26b98a55b9 377 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 142 3.0E-41 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS04235 e8feba387d129aacafdfcd26b98a55b9 377 Pfam PF07196 Flagellin hook IN motif 194 249 2.8E-11 T 11-11-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 vm_RS04235 e8feba387d129aacafdfcd26b98a55b9 377 Pfam PF00700 Bacterial flagellin C-terminal helical region 292 376 1.2E-24 T 11-11-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 vm_RS06370 b7f7a6c108320550a0d9d16b6cc1e916 240 Pfam PF04288 MukE-like family 10 234 2.5E-117 T 11-11-2016 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 vm_RS06370 b7f7a6c108320550a0d9d16b6cc1e916 240 Hamap MF_01802 Chromosome partition protein MukE [mukE]. 10 239 48.588 T 11-11-2016 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE GO:0005737|GO:0007059|GO:0030261 vm_RS05900 1e2b3dad1ff38a813a707b34abf1d408 353 SUPERFAMILY SSF142754 28 341 2.35E-106 T 11-11-2016 vm_RS05900 1e2b3dad1ff38a813a707b34abf1d408 353 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 347 66.653 T 11-11-2016 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342 vm_RS05900 1e2b3dad1ff38a813a707b34abf1d408 353 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 29 341 2.1E-113 T 11-11-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 vm_RS05900 1e2b3dad1ff38a813a707b34abf1d408 353 Pfam PF02445 Quinolinate synthetase A protein 32 340 7.3E-101 T 11-11-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342 vm_RS10255 b6e4ec9f94846af0755ebca08ba49547 149 Pfam PF01957 NfeD-like C-terminal, partner-binding 12 148 3.2E-25 T 11-11-2016 IPR002810 NfeD-like, C-terminal domain vm_RS10255 b6e4ec9f94846af0755ebca08ba49547 149 SUPERFAMILY SSF141322 94 148 3.14E-7 T 11-11-2016 vm_RS10255 b6e4ec9f94846af0755ebca08ba49547 149 Gene3D G3DSA:2.40.50.140 93 149 5.2E-16 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 SMART SM00419 160 208 4.2E-17 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 ProSitePatterns PS00042 Crp-type HTH domain signature. 168 191 - T 11-11-2016 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 71 89 - T 11-11-2016 IPR018488 Cyclic nucleotide-binding, conserved site vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 SUPERFAMILY SSF51206 8 137 6.42E-35 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 SMART SM00100 2 122 1.5E-26 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 SUPERFAMILY SSF46785 139 207 2.69E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 Pfam PF00325 Bacterial regulatory proteins, crp family 166 197 8.6E-16 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 ProSitePatterns PS00888 Cyclic nucleotide-binding domain signature 1. 30 46 - T 11-11-2016 IPR018488 Cyclic nucleotide-binding, conserved site vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 Gene3D G3DSA:1.10.10.10 144 207 1.2E-26 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 182 197 5.7E-11 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 166 182 5.7E-11 T 11-11-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 Gene3D G3DSA:2.60.120.10 6 143 6.0E-44 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS01870 0b7d81fec9fe22fd9ccc9352d89bc4f8 210 Pfam PF00027 Cyclic nucleotide-binding domain 23 109 2.7E-23 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain vm_RS07845 f7c7443facacf440eeb5ac3485d25c07 379 Gene3D G3DSA:3.40.50.720 166 344 5.8E-28 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS07845 f7c7443facacf440eeb5ac3485d25c07 379 Gene3D G3DSA:3.30.1780.10 8 165 1.2E-41 T 11-11-2016 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 vm_RS07845 f7c7443facacf440eeb5ac3485d25c07 379 PIRSF PIRSF001439 3 373 8.2E-104 T 11-11-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 vm_RS07845 f7c7443facacf440eeb5ac3485d25c07 379 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 23 364 1.9E-70 T 11-11-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 vm_RS07845 f7c7443facacf440eeb5ac3485d25c07 379 SUPERFAMILY SSF51735 4 376 2.4E-67 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS03015 01331a3d93123e8d9a5724d80b6e5d18 132 Pfam PF00293 NUDIX domain 6 125 2.0E-19 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 vm_RS03015 01331a3d93123e8d9a5724d80b6e5d18 132 Gene3D G3DSA:3.90.79.10 2 127 6.2E-31 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS03015 01331a3d93123e8d9a5724d80b6e5d18 132 ProSitePatterns PS00893 Nudix box signature. 39 60 - T 11-11-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 vm_RS03015 01331a3d93123e8d9a5724d80b6e5d18 132 TIGRFAM TIGR00586 mutt: mutator mutT protein 2 126 2.4E-39 T 11-11-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 vm_RS03015 01331a3d93123e8d9a5724d80b6e5d18 132 PRINTS PR00502 NUDIX hydrolase family signature 34 48 3.8E-9 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 vm_RS03015 01331a3d93123e8d9a5724d80b6e5d18 132 PRINTS PR00502 NUDIX hydrolase family signature 48 63 3.8E-9 T 11-11-2016 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 vm_RS03015 01331a3d93123e8d9a5724d80b6e5d18 132 SUPERFAMILY SSF55811 2 127 2.3E-33 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS04460 59a71eb0f81e11adea466f7d151b9b9e 178 Gene3D G3DSA:1.20.1380.10 67 178 1.2E-50 T 11-11-2016 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 vm_RS04460 59a71eb0f81e11adea466f7d151b9b9e 178 Pfam PF03925 SeqA protein C-terminal domain 69 176 1.7E-45 T 11-11-2016 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 vm_RS04460 59a71eb0f81e11adea466f7d151b9b9e 178 Hamap MF_00908 Negative modulator of initiation of replication [seqA]. 1 178 40.665 T 11-11-2016 IPR005621 Negative modulator of initiation of replicationr SeqA GO:0003677|GO:0032297 vm_RS04460 59a71eb0f81e11adea466f7d151b9b9e 178 SUPERFAMILY SSF47598 1 34 4.22E-13 T 11-11-2016 IPR010985 Ribbon-helix-helix GO:0006355 vm_RS04460 59a71eb0f81e11adea466f7d151b9b9e 178 SUPERFAMILY SSF82808 64 177 8.5E-49 T 11-11-2016 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain GO:0003677 vm_RS04460 59a71eb0f81e11adea466f7d151b9b9e 178 Gene3D G3DSA:1.10.1220.10 1 38 3.3E-25 T 11-11-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 vm_RS16260 3c49f8708d3df3254f20b1b4ebca46d3 400 Gene3D G3DSA:3.40.50.300 172 356 1.8E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS16260 3c49f8708d3df3254f20b1b4ebca46d3 400 Gene3D G3DSA:3.40.50.300 2 171 1.2E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS16260 3c49f8708d3df3254f20b1b4ebca46d3 400 SMART SM00487 1 177 4.9E-22 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS16260 3c49f8708d3df3254f20b1b4ebca46d3 400 Pfam PF00270 DEAD/DEAH box helicase 11 151 7.9E-19 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 vm_RS16260 3c49f8708d3df3254f20b1b4ebca46d3 400 Pfam PF00271 Helicase conserved C-terminal domain 198 306 6.1E-20 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS16260 3c49f8708d3df3254f20b1b4ebca46d3 400 SUPERFAMILY SSF52540 35 317 2.92E-55 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS16260 3c49f8708d3df3254f20b1b4ebca46d3 400 SMART SM00490 223 307 3.6E-23 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS06605 6f342b2021bba2cd3d26172ae98f5b37 211 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 68 89 - T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 vm_RS06605 6f342b2021bba2cd3d26172ae98f5b37 211 Pfam PF01066 CDP-alcohol phosphatidyltransferase 28 89 4.6E-10 T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 vm_RS02115 a1d72ce96a1b48e6c89eb1ac8189c2b8 460 SUPERFAMILY SSF52540 73 354 5.35E-71 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02115 a1d72ce96a1b48e6c89eb1ac8189c2b8 460 Pfam PF00270 DEAD/DEAH box helicase 28 194 1.0E-46 T 11-11-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 vm_RS02115 a1d72ce96a1b48e6c89eb1ac8189c2b8 460 Gene3D G3DSA:3.40.50.300 3 209 7.1E-76 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02115 a1d72ce96a1b48e6c89eb1ac8189c2b8 460 SMART SM00490 257 338 4.7E-30 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS02115 a1d72ce96a1b48e6c89eb1ac8189c2b8 460 Pfam PF03880 DbpA RNA binding domain 387 457 8.0E-23 T 11-11-2016 IPR005580 DbpA, RNA-binding domain vm_RS02115 a1d72ce96a1b48e6c89eb1ac8189c2b8 460 Pfam PF00271 Helicase conserved C-terminal domain 232 338 2.4E-27 T 11-11-2016 IPR001650 Helicase, C-terminal vm_RS02115 a1d72ce96a1b48e6c89eb1ac8189c2b8 460 Gene3D G3DSA:3.40.50.300 212 368 2.7E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02115 a1d72ce96a1b48e6c89eb1ac8189c2b8 460 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 152 160 - T 11-11-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site vm_RS02115 a1d72ce96a1b48e6c89eb1ac8189c2b8 460 SMART SM00487 23 220 1.8E-54 T 11-11-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain vm_RS04245 deaa2b9651ad61fbde29c056f99149e3 153 Pfam PF03646 FlaG protein 52 150 3.4E-25 T 11-11-2016 IPR005186 FlaG protein vm_RS04245 deaa2b9651ad61fbde29c056f99149e3 153 Gene3D G3DSA:3.30.160.170 57 140 3.1E-25 T 11-11-2016 IPR005186 FlaG protein vm_RS04245 deaa2b9651ad61fbde29c056f99149e3 153 SUPERFAMILY SSF160214 59 150 1.02E-22 T 11-11-2016 IPR005186 FlaG protein vm_RS12295 a2680b3b8087729b1631d7e302b4ae94 245 Pfam PF02167 Cytochrome C1 family 34 244 2.4E-15 T 11-11-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 Reactome: R-HSA-1268020|Reactome: R-HSA-611105 vm_RS12295 a2680b3b8087729b1631d7e302b4ae94 245 Gene3D G3DSA:1.20.5.100 214 245 4.6E-9 T 11-11-2016 vm_RS12295 a2680b3b8087729b1631d7e302b4ae94 245 Gene3D G3DSA:1.10.760.10 16 210 3.0E-62 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS12295 a2680b3b8087729b1631d7e302b4ae94 245 SUPERFAMILY SSF46626 16 209 5.3E-48 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS13935 52a9452e63527a248ffc43226ef45f60 382 Pfam PF01551 Peptidase family M23 283 376 8.2E-23 T 11-11-2016 IPR016047 Peptidase M23 vm_RS13935 52a9452e63527a248ffc43226ef45f60 382 SUPERFAMILY SSF51261 172 380 7.32E-47 T 11-11-2016 IPR011055 Duplicated hybrid motif vm_RS13935 52a9452e63527a248ffc43226ef45f60 382 Gene3D G3DSA:2.70.70.10 241 381 1.8E-33 T 11-11-2016 vm_RS12950 746d3bc42237d220181cd26b0dc8fd47 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 8.8E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS12950 746d3bc42237d220181cd26b0dc8fd47 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 8.8E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS12950 746d3bc42237d220181cd26b0dc8fd47 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 8.8E-7 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS12950 746d3bc42237d220181cd26b0dc8fd47 298 Pfam PF03466 LysR substrate binding domain 97 260 7.1E-10 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS12950 746d3bc42237d220181cd26b0dc8fd47 298 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 4 295 9.0E-104 T 11-11-2016 IPR017685 HTH-type transcriptional regulator ArgP vm_RS12950 746d3bc42237d220181cd26b0dc8fd47 298 Gene3D G3DSA:1.10.10.10 4 86 2.2E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12950 746d3bc42237d220181cd26b0dc8fd47 298 Hamap MF_00513 HTH-type transcriptional regulator ArgP [argP]. 1 298 58.464 T 11-11-2016 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria vm_RS12950 746d3bc42237d220181cd26b0dc8fd47 298 SUPERFAMILY SSF53850 96 294 9.77E-20 T 11-11-2016 vm_RS12950 746d3bc42237d220181cd26b0dc8fd47 298 SUPERFAMILY SSF46785 4 112 8.71E-16 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12950 746d3bc42237d220181cd26b0dc8fd47 298 Gene3D G3DSA:3.40.190.10 93 198 4.0E-41 T 11-11-2016 vm_RS12950 746d3bc42237d220181cd26b0dc8fd47 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 1.5E-15 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS00305 a2261d3660adb342359cf0a239ce9be0 256 Hamap MF_00443 Thiazole synthase [thiG]. 1 253 43.453 T 11-11-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 vm_RS00305 a2261d3660adb342359cf0a239ce9be0 256 Gene3D G3DSA:3.20.20.70 1 252 6.4E-63 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS00305 a2261d3660adb342359cf0a239ce9be0 256 SUPERFAMILY SSF110399 1 235 4.05E-86 T 11-11-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892 vm_RS00305 a2261d3660adb342359cf0a239ce9be0 256 Pfam PF05690 Thiazole biosynthesis protein ThiG 4 247 4.3E-110 T 11-11-2016 vm_RS10815 e737867640fef169d4a4fb01a89eb864 137 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 8.3E-5 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS10815 e737867640fef169d4a4fb01a89eb864 137 Pfam PF13633 Prokaryotic N-terminal methylation site 5 31 3.1E-9 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS01765 1cce4e4dfe51eadbfb24f1807e6060d6 338 SUPERFAMILY SSF53067 185 326 2.66E-7 T 11-11-2016 vm_RS01765 1cce4e4dfe51eadbfb24f1807e6060d6 338 Gene3D G3DSA:3.30.420.40 3 99 1.2E-5 T 11-11-2016 vm_RS01765 1cce4e4dfe51eadbfb24f1807e6060d6 338 Gene3D G3DSA:3.30.420.40 186 297 1.6E-5 T 11-11-2016 vm_RS01765 1cce4e4dfe51eadbfb24f1807e6060d6 338 PIRSF PIRSF019169 1 330 1.7E-85 T 11-11-2016 IPR005883 Type IV pilus assembly protein PilM vm_RS01765 1cce4e4dfe51eadbfb24f1807e6060d6 338 TIGRFAM TIGR01175 pilM: type IV pilus assembly protein PilM 3 329 1.1E-113 T 11-11-2016 IPR005883 Type IV pilus assembly protein PilM vm_RS01765 1cce4e4dfe51eadbfb24f1807e6060d6 338 SUPERFAMILY SSF53067 5 165 9.23E-6 T 11-11-2016 vm_RS01765 1cce4e4dfe51eadbfb24f1807e6060d6 338 Pfam PF11104 Type IV pilus assembly protein PilM; 8 328 3.3E-48 T 11-11-2016 IPR005883 Type IV pilus assembly protein PilM vm_RS06870 049b639b34c06afe81806465985323a6 289 Gene3D G3DSA:3.40.190.10 90 175 3.0E-18 T 11-11-2016 vm_RS06870 049b639b34c06afe81806465985323a6 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.7E-21 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS06870 049b639b34c06afe81806465985323a6 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.0E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS06870 049b639b34c06afe81806465985323a6 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.0E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS06870 049b639b34c06afe81806465985323a6 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.0E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS06870 049b639b34c06afe81806465985323a6 289 Pfam PF03466 LysR substrate binding domain 89 287 2.0E-44 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS06870 049b639b34c06afe81806465985323a6 289 SUPERFAMILY SSF53850 89 288 2.51E-39 T 11-11-2016 vm_RS06870 049b639b34c06afe81806465985323a6 289 SUPERFAMILY SSF46785 1 86 8.76E-25 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS06870 049b639b34c06afe81806465985323a6 289 Gene3D G3DSA:3.40.190.10 176 261 7.3E-18 T 11-11-2016 vm_RS06870 049b639b34c06afe81806465985323a6 289 Gene3D G3DSA:1.10.10.10 1 85 2.0E-30 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS14850 2efaef2e8a4eab24d41f056d39ef3248 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 156 13.144 T 11-11-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 vm_RS14850 2efaef2e8a4eab24d41f056d39ef3248 156 SUPERFAMILY SSF81573 63 121 5.1E-15 T 11-11-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain vm_RS14850 2efaef2e8a4eab24d41f056d39ef3248 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 137 4.2E-36 T 11-11-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 vm_RS14850 2efaef2e8a4eab24d41f056d39ef3248 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 156 5.8E-59 T 11-11-2016 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 vm_RS14850 2efaef2e8a4eab24d41f056d39ef3248 156 Gene3D G3DSA:1.20.5.620 63 122 1.1E-24 T 11-11-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain vm_RS11865 d5f1dc4ba5b6b4e18f0813796d4d69cc 437 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 14 413 3.0E-133 T 11-11-2016 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 vm_RS11865 d5f1dc4ba5b6b4e18f0813796d4d69cc 437 Pfam PF05525 Branched-chain amino acid transport protein 8 425 1.4E-156 T 11-11-2016 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 vm_RS01005 7c76bfead1380088abd20593499975bb 456 Pfam PF07693 KAP family P-loop domain 46 250 8.1E-28 T 11-11-2016 IPR011646 KAP family P-loop domain vm_RS08535 69844092f46d6e553601337b88615938 70 SMART SM00357 6 70 2.6E-29 T 11-11-2016 IPR011129 Cold shock protein GO:0003676 vm_RS08535 69844092f46d6e553601337b88615938 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 11-11-2016 IPR019844 Cold-shock conserved site vm_RS08535 69844092f46d6e553601337b88615938 70 SUPERFAMILY SSF50249 4 69 1.54E-25 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS08535 69844092f46d6e553601337b88615938 70 PIRSF PIRSF002599 1 70 7.0E-25 T 11-11-2016 IPR012156 Cold shock, CspA GO:0003676 vm_RS08535 69844092f46d6e553601337b88615938 70 Pfam PF00313 'Cold-shock' DNA-binding domain 6 69 1.9E-30 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 vm_RS08535 69844092f46d6e553601337b88615938 70 PRINTS PR00050 Cold shock protein signature 7 22 3.2E-16 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 vm_RS08535 69844092f46d6e553601337b88615938 70 PRINTS PR00050 Cold shock protein signature 28 37 3.2E-16 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 vm_RS08535 69844092f46d6e553601337b88615938 70 PRINTS PR00050 Cold shock protein signature 43 61 3.2E-16 T 11-11-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 vm_RS08535 69844092f46d6e553601337b88615938 70 Gene3D G3DSA:2.40.50.140 5 69 6.5E-31 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS09165 c87dcd4cb726b3595a15f342f9314b3f 210 SUPERFAMILY SSF141734 13 123 1.57E-46 T 11-11-2016 vm_RS09165 c87dcd4cb726b3595a15f342f9314b3f 210 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 37 109 7.5E-33 T 11-11-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 vm_RS09165 c87dcd4cb726b3595a15f342f9314b3f 210 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 60 109 6.0E-24 T 11-11-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 vm_RS09165 c87dcd4cb726b3595a15f342f9314b3f 210 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 12 210 38.104 T 11-11-2016 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 vm_RS09165 c87dcd4cb726b3595a15f342f9314b3f 210 SUPERFAMILY SSF101386 122 210 8.6E-26 T 11-11-2016 vm_RS09165 c87dcd4cb726b3595a15f342f9314b3f 210 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 122 209 3.5E-19 T 11-11-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 vm_RS09165 c87dcd4cb726b3595a15f342f9314b3f 210 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 119 205 19.854 T 11-11-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 vm_RS09165 c87dcd4cb726b3595a15f342f9314b3f 210 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 122 205 1.7E-32 T 11-11-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 vm_RS11220 0fb1093f108d9a3e07e1050c88817d51 313 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 34 302 8.0E-83 T 11-11-2016 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 vm_RS11220 0fb1093f108d9a3e07e1050c88817d51 313 Hamap MF_00397 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [citG]. 1 313 170.039 T 11-11-2016 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 vm_RS11220 0fb1093f108d9a3e07e1050c88817d51 313 TIGRFAM TIGR03125 citrate_citG: triphosphoribosyl-dephospho-CoA synthase CitG 32 304 1.6E-114 T 11-11-2016 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 vm_RS01340 bfa711b85924ccead85bdf89d7d2d43e 272 Pfam PF04233 Phage Mu protein F like protein 52 180 1.4E-17 T 11-11-2016 IPR006528 Phage head morphogenesis domain vm_RS11050 bfa711b85924ccead85bdf89d7d2d43e 272 Pfam PF04233 Phage Mu protein F like protein 52 180 1.4E-17 T 11-11-2016 IPR006528 Phage head morphogenesis domain vm_RS04710 2eb23b68bbe5fbe4ee19c2a6760b3afb 194 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 82 1.3E-34 T 11-11-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS04710 2eb23b68bbe5fbe4ee19c2a6760b3afb 194 PIRSF PIRSF000349 1 194 1.9E-83 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS04710 2eb23b68bbe5fbe4ee19c2a6760b3afb 194 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 190 1.3E-37 T 11-11-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS04710 2eb23b68bbe5fbe4ee19c2a6760b3afb 194 SUPERFAMILY SSF54719 84 193 8.25E-43 T 11-11-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS04710 2eb23b68bbe5fbe4ee19c2a6760b3afb 194 SUPERFAMILY SSF46609 1 84 2.36E-35 T 11-11-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS04710 2eb23b68bbe5fbe4ee19c2a6760b3afb 194 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 158 165 - T 11-11-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS04710 2eb23b68bbe5fbe4ee19c2a6760b3afb 194 Gene3D G3DSA:1.10.287.990 20 82 4.6E-24 T 11-11-2016 vm_RS04710 2eb23b68bbe5fbe4ee19c2a6760b3afb 194 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 1.4E-21 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS04710 2eb23b68bbe5fbe4ee19c2a6760b3afb 194 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.4E-21 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS04710 2eb23b68bbe5fbe4ee19c2a6760b3afb 194 PRINTS PR01703 Manganese superoxide dismutase signature 156 168 1.4E-21 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS04710 2eb23b68bbe5fbe4ee19c2a6760b3afb 194 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.4E-21 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS04710 2eb23b68bbe5fbe4ee19c2a6760b3afb 194 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 1.4E-21 T 11-11-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS07600 aae9c91012bee4f1a9caa45c44a0d89c 315 SUPERFAMILY SSF52402 4 159 9.21E-26 T 11-11-2016 vm_RS07600 aae9c91012bee4f1a9caa45c44a0d89c 315 Pfam PF00582 Universal stress protein family 4 148 4.2E-13 T 11-11-2016 IPR006016 UspA GO:0006950 vm_RS07600 aae9c91012bee4f1a9caa45c44a0d89c 315 Pfam PF00582 Universal stress protein family 176 301 5.4E-16 T 11-11-2016 IPR006016 UspA GO:0006950 vm_RS07600 aae9c91012bee4f1a9caa45c44a0d89c 315 SUPERFAMILY SSF52402 173 309 3.35E-24 T 11-11-2016 vm_RS07600 aae9c91012bee4f1a9caa45c44a0d89c 315 Gene3D G3DSA:3.40.50.620 4 141 2.1E-19 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS07600 aae9c91012bee4f1a9caa45c44a0d89c 315 Gene3D G3DSA:3.40.50.620 142 300 2.9E-25 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS07740 96ab36745fd95dc05d4a6fa6ffc39121 285 TIGRFAM TIGR02298 HpaD_Fe: 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1 283 3.1E-170 T 11-11-2016 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD-Fe KEGG: 00350+1.13.11.15 vm_RS07740 96ab36745fd95dc05d4a6fa6ffc39121 285 SUPERFAMILY SSF53213 12 281 1.09E-50 T 11-11-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 vm_RS07740 96ab36745fd95dc05d4a6fa6ffc39121 285 Gene3D G3DSA:3.40.830.10 6 281 1.9E-27 T 11-11-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 vm_RS07740 96ab36745fd95dc05d4a6fa6ffc39121 285 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 281 1.3E-67 T 11-11-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 vm_RS12360 750d48d0630fd2625777f2e81240fc2c 82 SUPERFAMILY SSF54565 1 77 8.63E-28 T 11-11-2016 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12360 750d48d0630fd2625777f2e81240fc2c 82 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 79 5.2E-27 T 11-11-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12360 750d48d0630fd2625777f2e81240fc2c 82 Gene3D G3DSA:3.30.1320.10 1 79 8.1E-32 T 11-11-2016 IPR023803 Ribosomal protein S16 domain Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12360 750d48d0630fd2625777f2e81240fc2c 82 Pfam PF00886 Ribosomal protein S16 8 68 2.3E-23 T 11-11-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12360 750d48d0630fd2625777f2e81240fc2c 82 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 22.793 T 11-11-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12360 750d48d0630fd2625777f2e81240fc2c 82 ProSitePatterns PS00732 Ribosomal protein S16 signature. 2 11 - T 11-11-2016 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 Gene3D G3DSA:3.40.50.80 103 234 1.7E-36 T 11-11-2016 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 135 144 1.2E-13 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 30 42 1.2E-13 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 110 129 1.2E-13 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 46 53 1.2E-13 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 PRINTS PR00410 Phenol hydroxylase reductase family signature 95 104 1.2E-13 T 11-11-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 Pfam PF00970 Oxidoreductase FAD-binding domain 16 99 5.1E-5 T 11-11-2016 IPR008333 Oxidoreductase, FAD-binding domain Reactome: R-HSA-1237044 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 110 129 9.6E-5 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 135 144 9.6E-5 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 46 53 9.6E-5 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 30 40 9.6E-5 T 11-11-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 Pfam PF00175 Oxidoreductase NAD-binding domain 111 214 4.5E-22 T 11-11-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 Gene3D G3DSA:2.40.30.10 2 101 1.7E-25 T 11-11-2016 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 SUPERFAMILY SSF63380 2 100 5.03E-17 T 11-11-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 vm_RS14085 27aa8bd3dc199c7c7c592292650e9198 236 SUPERFAMILY SSF52343 103 234 5.37E-34 T 11-11-2016 vm_RS01555 0004434239f7bfb3ba0c30e9365687ba 105 ProDom PD020365 REPRESSOR MET BIOSYNTHESIS TRANSCRIPTION METJ METHIONINE REGULON DNA-BINDING REGULATORY AMINO-ACID 10 101 8.0E-49 T 11-11-2016 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 vm_RS01555 0004434239f7bfb3ba0c30e9365687ba 105 Hamap MF_00744 Met repressor [metJ]. 1 105 35.123 T 11-11-2016 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 vm_RS01555 0004434239f7bfb3ba0c30e9365687ba 105 SUPERFAMILY SSF47598 3 104 2.89E-56 T 11-11-2016 IPR010985 Ribbon-helix-helix GO:0006355 vm_RS01555 0004434239f7bfb3ba0c30e9365687ba 105 Gene3D G3DSA:1.10.140.10 2 104 2.0E-62 T 11-11-2016 IPR023453 Methionine repressor MetJ domain vm_RS01555 0004434239f7bfb3ba0c30e9365687ba 105 Pfam PF01340 Met Apo-repressor, MetJ 3 99 4.6E-59 T 11-11-2016 IPR002084 Methionine repressor MetJ GO:0003700|GO:0006355|GO:0006555 vm_RS12930 52d37734ca054c34e169691506117e1f 610 Gene3D G3DSA:3.60.20.10 2 237 2.6E-79 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS12930 52d37734ca054c34e169691506117e1f 610 SUPERFAMILY SSF56235 2 234 3.95E-76 T 11-11-2016 IPR029055 Nucleophile aminohydrolases, N-terminal vm_RS12930 52d37734ca054c34e169691506117e1f 610 Gene3D G3DSA:3.40.50.10490 447 610 2.7E-65 T 11-11-2016 vm_RS12930 52d37734ca054c34e169691506117e1f 610 Pfam PF01380 SIS domain 463 592 5.9E-25 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 vm_RS12930 52d37734ca054c34e169691506117e1f 610 Pfam PF01380 SIS domain 290 418 1.8E-32 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 vm_RS12930 52d37734ca054c34e169691506117e1f 610 Pfam PF13522 Glutamine amidotransferase domain 64 174 4.0E-20 T 11-11-2016 vm_RS12930 52d37734ca054c34e169691506117e1f 610 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 610 40.438 T 11-11-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 vm_RS12930 52d37734ca054c34e169691506117e1f 610 SUPERFAMILY SSF53697 245 610 6.77E-111 T 11-11-2016 vm_RS12930 52d37734ca054c34e169691506117e1f 610 Gene3D G3DSA:3.40.50.10490 244 446 2.9E-66 T 11-11-2016 vm_RS12930 52d37734ca054c34e169691506117e1f 610 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 610 1.4E-260 T 11-11-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 vm_RS13290 cb8f8008563f874d246c2d5753aee8a7 505 Pfam PF00474 Sodium:solute symporter family 34 416 1.1E-45 T 11-11-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 vm_RS05010 27a2f9da734fea73e3e1cfdbd66021b7 666 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 327 6.6E-86 T 11-11-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 vm_RS05010 27a2f9da734fea73e3e1cfdbd66021b7 666 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 375 394 4.9E-9 T 11-11-2016 vm_RS05010 27a2f9da734fea73e3e1cfdbd66021b7 666 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 496 514 4.9E-9 T 11-11-2016 vm_RS05010 27a2f9da734fea73e3e1cfdbd66021b7 666 Gene3D G3DSA:3.50.50.60 359 462 3.7E-24 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS05010 27a2f9da734fea73e3e1cfdbd66021b7 666 Gene3D G3DSA:3.50.50.60 471 619 1.4E-42 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS05010 27a2f9da734fea73e3e1cfdbd66021b7 666 SUPERFAMILY SSF51905 371 600 7.9E-39 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS05010 27a2f9da734fea73e3e1cfdbd66021b7 666 Gene3D G3DSA:3.20.20.70 1 358 4.3E-121 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS05010 27a2f9da734fea73e3e1cfdbd66021b7 666 SUPERFAMILY SSF51395 2 361 2.35E-109 T 11-11-2016 vm_RS05010 27a2f9da734fea73e3e1cfdbd66021b7 666 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 373 627 1.6E-25 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS15070 907847a4c02766bd930ed3a6321d8dbb 223 Gene3D G3DSA:1.10.3720.10 14 219 5.2E-47 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS15070 907847a4c02766bd930ed3a6321d8dbb 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 218 2.0E-20 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS15070 907847a4c02766bd930ed3a6321d8dbb 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 112 1.7E-24 T 11-11-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 vm_RS15070 907847a4c02766bd930ed3a6321d8dbb 223 SUPERFAMILY SSF161098 13 206 2.09E-44 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS11835 b82915031cb355035df403f6c26a5275 344 Gene3D G3DSA:3.20.20.100 1 342 4.9E-107 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain vm_RS11835 b82915031cb355035df403f6c26a5275 344 Pfam PF00248 Aldo/keto reductase family 15 335 1.1E-74 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain vm_RS11835 b82915031cb355035df403f6c26a5275 344 SUPERFAMILY SSF51430 1 344 4.98E-109 T 11-11-2016 IPR023210 NADP-dependent oxidoreductase domain vm_RS10465 23b7b593956a4c467283e20c198e5283 957 Pfam PF16458 Beta-prism lectin 508 637 1.3E-54 T 11-11-2016 IPR032496 Hemolysin, beta-prism lectin vm_RS10465 23b7b593956a4c467283e20c198e5283 957 Pfam PF16458 Beta-prism lectin 822 955 3.0E-53 T 11-11-2016 IPR032496 Hemolysin, beta-prism lectin vm_RS10465 23b7b593956a4c467283e20c198e5283 957 ProSitePatterns PS00018 EF-hand calcium-binding domain. 255 267 - T 11-11-2016 IPR018247 EF-Hand 1, calcium-binding site vm_RS10465 23b7b593956a4c467283e20c198e5283 957 SUPERFAMILY SSF69318 252 487 5.14E-17 T 11-11-2016 vm_RS10465 23b7b593956a4c467283e20c198e5283 957 SUPERFAMILY SSF69318 633 767 1.23E-7 T 11-11-2016 vm_RS10935 c89c73fe7d93205b5d0cb404d7b43129 204 Pfam PF11363 Protein of unknown function (DUF3164) 10 203 2.5E-83 T 11-11-2016 IPR021505 Bacteriophage B3, Orf6 vm_RS01225 c89c73fe7d93205b5d0cb404d7b43129 204 Pfam PF11363 Protein of unknown function (DUF3164) 10 203 2.5E-83 T 11-11-2016 IPR021505 Bacteriophage B3, Orf6 vm_RS13445 7de1537fa7c1aa2304fa73cc2d5110be 296 Pfam PF04085 rod shape-determining protein MreC 123 269 3.0E-39 T 11-11-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 vm_RS13445 7de1537fa7c1aa2304fa73cc2d5110be 296 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 1 273 3.4E-83 T 11-11-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 vm_RS13445 7de1537fa7c1aa2304fa73cc2d5110be 296 PIRSF PIRSF038471 2 283 1.7E-78 T 11-11-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 vm_RS09750 eaababfa439e7510c15dec026c647375 102 Gene3D G3DSA:1.10.260.40 5 74 5.2E-19 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS09750 eaababfa439e7510c15dec026c647375 102 Pfam PF12844 Helix-turn-helix domain 10 70 8.0E-12 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 vm_RS09750 eaababfa439e7510c15dec026c647375 102 SUPERFAMILY SSF47413 6 74 3.94E-15 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS09750 eaababfa439e7510c15dec026c647375 102 SMART SM00530 10 69 8.8E-13 T 11-11-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 vm_RS09050 b2cd1de8c5c824b862246aff8ace4ba5 328 TIGRFAM TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog 10 323 5.2E-168 T 11-11-2016 IPR011758 Alpha-L-glutamate ligase-related protein vm_RS09050 b2cd1de8c5c824b862246aff8ace4ba5 328 Gene3D G3DSA:3.30.470.20 45 106 5.8E-5 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS09050 b2cd1de8c5c824b862246aff8ace4ba5 328 Gene3D G3DSA:3.30.470.20 238 290 3.2E-5 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS09050 b2cd1de8c5c824b862246aff8ace4ba5 328 SUPERFAMILY SSF56059 51 207 6.92E-20 T 11-11-2016 vm_RS09050 b2cd1de8c5c824b862246aff8ace4ba5 328 SUPERFAMILY SSF56059 237 285 6.92E-20 T 11-11-2016 vm_RS09050 b2cd1de8c5c824b862246aff8ace4ba5 328 Gene3D G3DSA:3.30.470.20 167 209 3.4E-4 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS09050 b2cd1de8c5c824b862246aff8ace4ba5 328 Pfam PF14397 Sugar-transfer associated ATP-grasp 26 299 1.2E-116 T 11-11-2016 vm_RS12830 97bb08fa054d6442fd1ef80d6b81c3cd 98 Pfam PF05488 PAAR motif 24 88 2.6E-22 T 11-11-2016 IPR008727 PAAR motif vm_RS09635 857c2ab28ed6c96cee64a0d0e1e0af10 300 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 94 279 1.1E-35 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS09635 857c2ab28ed6c96cee64a0d0e1e0af10 300 Gene3D G3DSA:1.10.287.950 64 271 2.7E-39 T 11-11-2016 vm_RS09635 857c2ab28ed6c96cee64a0d0e1e0af10 300 SMART SM00283 53 300 8.1E-23 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS09635 857c2ab28ed6c96cee64a0d0e1e0af10 300 SUPERFAMILY SSF58104 42 298 4.32E-46 T 11-11-2016 vm_RS04840 4cf50f3009f1b510ab361c71f281eb03 56 SUPERFAMILY SSF57829 2 55 3.97E-18 T 11-11-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 vm_RS04840 4cf50f3009f1b510ab361c71f281eb03 56 Pfam PF01783 Ribosomal L32p protein family 2 56 5.1E-20 T 11-11-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS04840 4cf50f3009f1b510ab361c71f281eb03 56 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 17.068 T 11-11-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS04840 4cf50f3009f1b510ab361c71f281eb03 56 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 55 6.5E-20 T 11-11-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS00455 095b088222c5e0a398c921e0431cc5cf 179 Gene3D G3DSA:3.40.1410.10 11 174 5.0E-49 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain vm_RS00455 095b088222c5e0a398c921e0431cc5cf 179 SUPERFAMILY SSF64288 8 174 8.17E-46 T 11-11-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain vm_RS00455 095b088222c5e0a398c921e0431cc5cf 179 Pfam PF04345 Chorismate lyase 12 179 1.8E-69 T 11-11-2016 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148 vm_RS00455 095b088222c5e0a398c921e0431cc5cf 179 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 15 174 23.213 T 11-11-2016 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148 vm_RS08815 503e11ceb91b4f0f8395e94b8aa00a9d 106 SUPERFAMILY SSF102816 3 105 8.24E-47 T 11-11-2016 IPR007376 dsDNA mimic, putative vm_RS08815 503e11ceb91b4f0f8395e94b8aa00a9d 106 ProDom PD020447 UPF0263 YCIU HD0986 VV1228 UNCHARACTERIZED 3D-STRUCTURE VV13059 BCR PM0536 VC1208 8 104 3.0E-41 T 11-11-2016 IPR007376 dsDNA mimic, putative vm_RS08815 503e11ceb91b4f0f8395e94b8aa00a9d 106 Gene3D G3DSA:3.10.450.140 6 105 1.6E-44 T 11-11-2016 IPR007376 dsDNA mimic, putative vm_RS08815 503e11ceb91b4f0f8395e94b8aa00a9d 106 PIRSF PIRSF004916 1 105 4.7E-53 T 11-11-2016 IPR007376 dsDNA mimic, putative vm_RS08815 503e11ceb91b4f0f8395e94b8aa00a9d 106 Hamap MF_00680 UPF0263 protein YciU [yciU]. 1 106 35.712 T 11-11-2016 IPR007376 dsDNA mimic, putative vm_RS08815 503e11ceb91b4f0f8395e94b8aa00a9d 106 Pfam PF04269 Protein of unknown function, DUF440 5 105 3.6E-44 T 11-11-2016 IPR007376 dsDNA mimic, putative vm_RS04440 4960ab5a26f487960a4862a777c01864 230 Pfam PF04172 LrgB-like family 14 225 2.6E-71 T 11-11-2016 IPR007300 CidB/LrgB family vm_RS09330 4c1b81f49512cf518f5d40a05d7fc57f 489 SUPERFAMILY SSF55073 340 489 3.06E-37 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS09330 4c1b81f49512cf518f5d40a05d7fc57f 489 SMART SM00267 324 489 2.1E-41 T 11-11-2016 IPR000160 GGDEF domain vm_RS09330 4c1b81f49512cf518f5d40a05d7fc57f 489 Pfam PF00990 Diguanylate cyclase, GGDEF domain 335 486 4.0E-37 T 11-11-2016 IPR000160 GGDEF domain vm_RS09330 4c1b81f49512cf518f5d40a05d7fc57f 489 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 333 488 1.5E-41 T 11-11-2016 IPR000160 GGDEF domain vm_RS09330 4c1b81f49512cf518f5d40a05d7fc57f 489 Gene3D G3DSA:3.30.70.270 337 489 4.8E-42 T 11-11-2016 vm_RS07435 2d9eef51c02b23564124cce6a45676d8 414 TIGRFAM TIGR00155 pqiA_fam: integral membrane protein, PqiA family 12 405 3.7E-106 T 11-11-2016 IPR005219 Conserved hypothetical protein CHP00155 vm_RS07435 2d9eef51c02b23564124cce6a45676d8 414 Pfam PF04403 Paraquat-inducible protein A 57 208 1.2E-39 T 11-11-2016 IPR007498 Paraquat-inducible protein A vm_RS07435 2d9eef51c02b23564124cce6a45676d8 414 Pfam PF04403 Paraquat-inducible protein A 252 406 1.3E-49 T 11-11-2016 IPR007498 Paraquat-inducible protein A vm_RS06865 abcf442e93e467f46923af95adbeb43d 405 SUPERFAMILY SSF103473 6 393 1.27E-53 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS06865 abcf442e93e467f46923af95adbeb43d 405 Pfam PF07690 Major Facilitator Superfamily 16 352 5.2E-41 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 vm_RS06865 abcf442e93e467f46923af95adbeb43d 405 Gene3D G3DSA:1.20.1250.20 13 192 6.1E-27 T 11-11-2016 vm_RS06865 abcf442e93e467f46923af95adbeb43d 405 Gene3D G3DSA:1.20.1250.20 212 392 3.3E-9 T 11-11-2016 vm_RS00125 29ac46d1abe848212bac035367797330 328 Hamap MF_01497 Stress response kinase A [srkA]. 4 318 47.383 T 11-11-2016 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 vm_RS00125 29ac46d1abe848212bac035367797330 328 Gene3D G3DSA:3.90.1200.10 110 325 2.5E-49 T 11-11-2016 vm_RS00125 29ac46d1abe848212bac035367797330 328 Pfam PF01636 Phosphotransferase enzyme family 35 256 1.5E-41 T 11-11-2016 IPR002575 Aminoglycoside phosphotransferase vm_RS00125 29ac46d1abe848212bac035367797330 328 SUPERFAMILY SSF56112 6 328 1.02E-89 T 11-11-2016 IPR011009 Protein kinase-like domain vm_RS00825 3e7945d19d80f707c6e462e9247af4d1 469 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 14 95 1.4E-31 T 11-11-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 vm_RS00825 3e7945d19d80f707c6e462e9247af4d1 469 SUPERFAMILY SSF55931 102 468 8.44E-140 T 11-11-2016 vm_RS00825 3e7945d19d80f707c6e462e9247af4d1 469 SMART SM01230 102 379 4.0E-153 T 11-11-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 vm_RS00825 3e7945d19d80f707c6e462e9247af4d1 469 ProSitePatterns PS00180 Glutamine synthetase signature 1. 50 68 - T 11-11-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 vm_RS00825 3e7945d19d80f707c6e462e9247af4d1 469 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 259 274 - T 11-11-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 vm_RS00825 3e7945d19d80f707c6e462e9247af4d1 469 Pfam PF00120 Glutamine synthetase, catalytic domain 103 466 1.9E-140 T 11-11-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 vm_RS00825 3e7945d19d80f707c6e462e9247af4d1 469 Gene3D G3DSA:3.10.20.70 3 105 1.6E-40 T 11-11-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 vm_RS00825 3e7945d19d80f707c6e462e9247af4d1 469 Gene3D G3DSA:3.30.590.10 106 455 3.6E-142 T 11-11-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 vm_RS00825 3e7945d19d80f707c6e462e9247af4d1 469 SUPERFAMILY SSF54368 3 100 9.42E-37 T 11-11-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 vm_RS00825 3e7945d19d80f707c6e462e9247af4d1 469 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 4 468 1.0E-213 T 11-11-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 vm_RS00825 3e7945d19d80f707c6e462e9247af4d1 469 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 386 398 - T 11-11-2016 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 vm_RS07025 2e7c6a4ef1d2f7df9d1da6da10f3fec2 170 Pfam PF00080 Copper/zinc superoxide dismutase (SODC) 31 169 1.7E-31 T 11-11-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS07025 2e7c6a4ef1d2f7df9d1da6da10f3fec2 170 Gene3D G3DSA:2.60.40.200 22 170 2.6E-47 T 11-11-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS07025 2e7c6a4ef1d2f7df9d1da6da10f3fec2 170 ProSitePatterns PS00332 Copper/Zinc superoxide dismutase signature 2. 158 169 - T 11-11-2016 IPR018152 Superoxide dismutase, copper/zinc, binding site GO:0004784|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS07025 2e7c6a4ef1d2f7df9d1da6da10f3fec2 170 SUPERFAMILY SSF49329 23 169 6.28E-51 T 11-11-2016 IPR001424 Superoxide dismutase, copper/zinc binding domain GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854|Reactome: R-HSA-3299685 vm_RS11780 6c6a4b650beaa41462799be7d4f7eaf7 86 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 85 3.4E-31 T 11-11-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS11780 6c6a4b650beaa41462799be7d4f7eaf7 86 Pfam PF01649 Ribosomal protein S20 2 84 9.8E-29 T 11-11-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS11780 6c6a4b650beaa41462799be7d4f7eaf7 86 Gene3D G3DSA:1.20.58.110 1 86 3.9E-32 T 11-11-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS11780 6c6a4b650beaa41462799be7d4f7eaf7 86 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 13 86 4.0E-36 T 11-11-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS11780 6c6a4b650beaa41462799be7d4f7eaf7 86 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.341 T 11-11-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS11780 6c6a4b650beaa41462799be7d4f7eaf7 86 SUPERFAMILY SSF46992 3 86 2.49E-32 T 11-11-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS07495 011fd98955d314c8548cf7b55d1c3590 80 Gene3D G3DSA:3.40.30.10 2 78 1.4E-28 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS07495 011fd98955d314c8548cf7b55d1c3590 80 SUPERFAMILY SSF52833 1 74 7.48E-15 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS07495 011fd98955d314c8548cf7b55d1c3590 80 Pfam PF05768 Glutaredoxin-like domain (DUF836) 2 72 9.9E-21 T 11-11-2016 IPR008554 Glutaredoxin-like vm_RS11710 7366dfc8825be349c1e64dcd91614814 558 Gene3D G3DSA:3.30.565.10 414 553 6.7E-10 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS11710 7366dfc8825be349c1e64dcd91614814 558 Pfam PF06580 Histidine kinase 366 444 2.4E-27 T 11-11-2016 IPR010559 Signal transduction histidine kinase, internal region GO:0000155|GO:0000160|GO:0016021 vm_RS11710 7366dfc8825be349c1e64dcd91614814 558 Pfam PF07694 5TMR of 5TMR-LYT 25 193 5.7E-59 T 11-11-2016 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region GO:0000155|GO:0000160|GO:0004673|GO:0016021|GO:0071555 vm_RS11710 7366dfc8825be349c1e64dcd91614814 558 Gene3D G3DSA:3.30.450.40 291 358 1.1E-4 T 11-11-2016 IPR029016 GAF domain-like vm_RS11710 7366dfc8825be349c1e64dcd91614814 558 SUPERFAMILY SSF55781 227 351 1.26E-7 T 11-11-2016 IPR029016 GAF domain-like vm_RS11710 7366dfc8825be349c1e64dcd91614814 558 Pfam PF13492 GAF domain 242 351 2.0E-7 T 11-11-2016 IPR003018 GAF domain GO:0005515 vm_RS11710 7366dfc8825be349c1e64dcd91614814 558 SUPERFAMILY SSF55874 420 553 2.34E-9 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS03480 7cd2a9b5e5b502ce2672fb82855382bf 357 Gene3D G3DSA:1.10.150.20 169 238 2.6E-21 T 11-11-2016 vm_RS03480 7cd2a9b5e5b502ce2672fb82855382bf 357 Pfam PF00817 impB/mucB/samB family 11 158 4.4E-50 T 11-11-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 vm_RS03480 7cd2a9b5e5b502ce2672fb82855382bf 357 Gene3D G3DSA:3.30.70.270 70 168 3.1E-34 T 11-11-2016 vm_RS03480 7cd2a9b5e5b502ce2672fb82855382bf 357 Pfam PF11798 IMS family HHH motif 171 201 2.0E-5 T 11-11-2016 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 vm_RS03480 7cd2a9b5e5b502ce2672fb82855382bf 357 Hamap MF_01113 DNA polymerase IV [dinB]. 5 353 36.728 T 11-11-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5655862|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210 vm_RS03480 7cd2a9b5e5b502ce2672fb82855382bf 357 SUPERFAMILY SSF56672 3 238 1.07E-90 T 11-11-2016 vm_RS03480 7cd2a9b5e5b502ce2672fb82855382bf 357 Gene3D G3DSA:3.30.1490.100 241 354 9.4E-40 T 11-11-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 vm_RS03480 7cd2a9b5e5b502ce2672fb82855382bf 357 Pfam PF11799 impB/mucB/samB family C-terminal domain 241 340 3.1E-4 T 11-11-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 vm_RS03480 7cd2a9b5e5b502ce2672fb82855382bf 357 SUPERFAMILY SSF100879 245 353 3.53E-24 T 11-11-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 vm_RS15790 dfd6b567ecb94df05815ef3d4f546f2d 165 Gene3D G3DSA:1.10.3150.10 3 160 1.8E-26 T 11-11-2016 IPR013976 Metal-dependent hydrolase HDOD vm_RS15790 dfd6b567ecb94df05815ef3d4f546f2d 165 Pfam PF08668 HDOD domain 16 132 1.4E-14 T 11-11-2016 IPR013976 Metal-dependent hydrolase HDOD vm_RS15790 dfd6b567ecb94df05815ef3d4f546f2d 165 SUPERFAMILY SSF109604 4 160 2.13E-31 T 11-11-2016 vm_RS08970 ae1bd354889156d50c5224cbadea05be 36 ProDom PD926058 BIOSYNTHESIS PEPTIDE LEADER AROMATIC VC1176 VV1222 OPERON ACID AMINO AMINO-ACID 1 36 6.0E-6 T 11-11-2016 IPR012639 Tryptophan operon leader peptide vm_RS08970 ae1bd354889156d50c5224cbadea05be 36 Pfam PF08056 Tryptophan operon leader peptide 1 36 6.7E-12 T 11-11-2016 IPR012639 Tryptophan operon leader peptide vm_RS05530 34e2739eeb43e134c49a8fe680d7a9da 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 1.8E-16 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS05530 34e2739eeb43e134c49a8fe680d7a9da 324 SUPERFAMILY SSF46785 1 87 4.42E-14 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05530 34e2739eeb43e134c49a8fe680d7a9da 324 Gene3D G3DSA:1.10.10.10 1 81 3.3E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05530 34e2739eeb43e134c49a8fe680d7a9da 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 5.4E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS05530 34e2739eeb43e134c49a8fe680d7a9da 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 5.4E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS05530 34e2739eeb43e134c49a8fe680d7a9da 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 5.4E-8 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS05530 34e2739eeb43e134c49a8fe680d7a9da 324 Gene3D G3DSA:3.40.190.10 91 183 6.8E-20 T 11-11-2016 vm_RS05530 34e2739eeb43e134c49a8fe680d7a9da 324 Gene3D G3DSA:3.40.190.10 184 260 2.0E-29 T 11-11-2016 vm_RS05530 34e2739eeb43e134c49a8fe680d7a9da 324 Pfam PF03466 LysR substrate binding domain 91 292 4.8E-38 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS05530 34e2739eeb43e134c49a8fe680d7a9da 324 SUPERFAMILY SSF53850 91 322 4.44E-40 T 11-11-2016 vm_RS03580 bf4bfbda5395c435c3efdaa1e7ef6b27 324 SUPERFAMILY SSF56042 142 301 6.43E-35 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain vm_RS03580 bf4bfbda5395c435c3efdaa1e7ef6b27 324 SUPERFAMILY SSF55326 3 136 6.93E-34 T 11-11-2016 vm_RS03580 bf4bfbda5395c435c3efdaa1e7ef6b27 324 Gene3D G3DSA:3.90.650.10 144 320 5.9E-47 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain vm_RS03580 bf4bfbda5395c435c3efdaa1e7ef6b27 324 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 3 320 2.7E-105 T 11-11-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 vm_RS03580 bf4bfbda5395c435c3efdaa1e7ef6b27 324 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 2 317 29.721 T 11-11-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 vm_RS03580 bf4bfbda5395c435c3efdaa1e7ef6b27 324 Pfam PF00586 AIR synthase related protein, N-terminal domain 28 136 2.0E-21 T 11-11-2016 IPR016188 PurM-like, N-terminal domain vm_RS03580 bf4bfbda5395c435c3efdaa1e7ef6b27 324 Gene3D G3DSA:3.30.1330.10 3 140 2.8E-44 T 11-11-2016 IPR016188 PurM-like, N-terminal domain vm_RS03580 bf4bfbda5395c435c3efdaa1e7ef6b27 324 Pfam PF02769 AIR synthase related protein, C-terminal domain 149 299 1.2E-10 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain vm_RS03580 bf4bfbda5395c435c3efdaa1e7ef6b27 324 PIRSF PIRSF005303 1 320 3.8E-87 T 11-11-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897 vm_RS13805 1b94fdaad6d00bfb7de6d5a7c0ae32c4 75 Gene3D G3DSA:1.20.5.300 7 55 2.7E-22 T 11-11-2016 vm_RS13805 1b94fdaad6d00bfb7de6d5a7c0ae32c4 75 Hamap MF_00715 Protein SlyX [slyX]. 8 75 17.737 T 11-11-2016 IPR007236 SlyX vm_RS13805 1b94fdaad6d00bfb7de6d5a7c0ae32c4 75 Pfam PF04102 SlyX 9 75 2.1E-24 T 11-11-2016 IPR007236 SlyX vm_RS12500 133d5c2b5f326bd5a10c91e8e62482b9 283 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 15 278 3.4E-124 T 11-11-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 vm_RS12500 133d5c2b5f326bd5a10c91e8e62482b9 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 280 1.1E-24 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12500 133d5c2b5f326bd5a10c91e8e62482b9 283 SUPERFAMILY SSF161098 22 272 8.22E-55 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12500 133d5c2b5f326bd5a10c91e8e62482b9 283 Gene3D G3DSA:1.10.3720.10 25 274 5.6E-49 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12500 133d5c2b5f326bd5a10c91e8e62482b9 283 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 9 273 3.5E-102 T 11-11-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 vm_RS12525 f3c612db6bb2084e2a4cb5b9d011b8d0 311 Gene3D G3DSA:3.10.350.10 46 91 2.5E-13 T 11-11-2016 IPR018392 LysM domain vm_RS12525 f3c612db6bb2084e2a4cb5b9d011b8d0 311 SMART SM00257 47 91 8.7E-11 T 11-11-2016 IPR018392 LysM domain vm_RS12525 f3c612db6bb2084e2a4cb5b9d011b8d0 311 Gene3D G3DSA:2.70.70.10 178 310 2.8E-39 T 11-11-2016 vm_RS12525 f3c612db6bb2084e2a4cb5b9d011b8d0 311 Pfam PF01476 LysM domain 48 90 1.2E-9 T 11-11-2016 IPR018392 LysM domain vm_RS12525 f3c612db6bb2084e2a4cb5b9d011b8d0 311 Pfam PF01551 Peptidase family M23 212 306 9.1E-30 T 11-11-2016 IPR016047 Peptidase M23 vm_RS12525 f3c612db6bb2084e2a4cb5b9d011b8d0 311 SUPERFAMILY SSF51261 163 310 2.35E-47 T 11-11-2016 IPR011055 Duplicated hybrid motif vm_RS12525 f3c612db6bb2084e2a4cb5b9d011b8d0 311 SUPERFAMILY SSF54106 46 91 5.36E-10 T 11-11-2016 IPR018392 LysM domain vm_RS11040 28e3550cf705a307aa34f23f2ce5d888 521 PIRSF PIRSF007056 1 511 6.8E-236 T 11-11-2016 IPR012036 Bacteriophage Mu, Gp28 vm_RS12730 a325cab590b6a1a5ef882c79f70123d0 382 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 50 250 3.8E-43 T 11-11-2016 IPR017732 Type IV / VI secretion system, DotU vm_RS12730 a325cab590b6a1a5ef882c79f70123d0 382 Pfam PF09850 Type VI secretion system protein DotU 50 249 2.5E-46 T 11-11-2016 IPR017732 Type IV / VI secretion system, DotU vm_RS13565 0006dc932ca9080c648d9ce04b56b979 372 PIRSF PIRSF000524 5 372 6.7E-110 T 11-11-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661 vm_RS13565 0006dc932ca9080c648d9ce04b56b979 372 Pfam PF00266 Aminotransferase class-V 13 338 1.0E-36 T 11-11-2016 IPR000192 Aminotransferase class V domain vm_RS13565 0006dc932ca9080c648d9ce04b56b979 372 Gene3D G3DSA:3.90.1150.10 269 372 4.7E-37 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS13565 0006dc932ca9080c648d9ce04b56b979 372 SUPERFAMILY SSF53383 9 371 7.29E-104 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS13565 0006dc932ca9080c648d9ce04b56b979 372 Gene3D G3DSA:3.40.640.10 23 268 1.1E-60 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS13565 0006dc932ca9080c648d9ce04b56b979 372 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 189 209 - T 11-11-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site vm_RS14215 464702eed18ea55f87feea2afedb60b2 205 Pfam PF16357 Putative PepSY_TM-like 13 194 2.2E-13 T 11-11-2016 IPR032307 Putative PepSY TM-like protein vm_RS02500 0fe57a667375072d859691a2270ecb0c 200 Pfam PF00694 Aconitase C-terminal domain 1 125 5.9E-39 T 11-11-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33 vm_RS02500 0fe57a667375072d859691a2270ecb0c 200 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 199 44.018 T 11-11-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 vm_RS02500 0fe57a667375072d859691a2270ecb0c 200 Gene3D G3DSA:3.20.19.10 1 194 8.8E-51 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel vm_RS02500 0fe57a667375072d859691a2270ecb0c 200 SUPERFAMILY SSF52016 1 196 3.92E-61 T 11-11-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel vm_RS02500 0fe57a667375072d859691a2270ecb0c 200 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 188 2.3E-96 T 11-11-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33 vm_RS09130 a88847f63322288961692b157504e1ff 558 SUPERFAMILY SSF116726 292 375 1.07E-9 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS09130 a88847f63322288961692b157504e1ff 558 Gene3D G3DSA:3.30.70.1450 229 284 5.8E-8 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS09130 a88847f63322288961692b157504e1ff 558 Pfam PF02080 TrkA-C domain 228 279 1.8E-8 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS09130 a88847f63322288961692b157504e1ff 558 Pfam PF02080 TrkA-C domain 307 372 5.5E-8 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS09130 a88847f63322288961692b157504e1ff 558 Hamap MF_01015 Putative transport protein YbjL [ybjL]. 1 558 59.098 T 11-11-2016 IPR023017 Transport protein YbjL, putative vm_RS09130 a88847f63322288961692b157504e1ff 558 Pfam PF06826 Predicted Permease Membrane Region 17 185 2.6E-37 T 11-11-2016 IPR006512 YidE/YbjL duplication vm_RS09130 a88847f63322288961692b157504e1ff 558 Pfam PF06826 Predicted Permease Membrane Region 387 554 8.4E-43 T 11-11-2016 IPR006512 YidE/YbjL duplication vm_RS09130 a88847f63322288961692b157504e1ff 558 Gene3D G3DSA:3.30.70.1450 306 378 5.9E-7 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS09130 a88847f63322288961692b157504e1ff 558 SUPERFAMILY SSF116726 228 283 5.23E-10 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS09130 a88847f63322288961692b157504e1ff 558 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 391 542 4.7E-37 T 11-11-2016 IPR006512 YidE/YbjL duplication vm_RS09130 a88847f63322288961692b157504e1ff 558 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 21 171 4.8E-30 T 11-11-2016 IPR006512 YidE/YbjL duplication vm_RS00420 e699bc12ce58e70180b0729b289e22ea 135 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 81 1.0E-34 T 11-11-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 vm_RS00420 e699bc12ce58e70180b0729b289e22ea 135 Gene3D G3DSA:1.10.287.880 42 73 6.4E-4 T 11-11-2016 vm_RS00420 e699bc12ce58e70180b0729b289e22ea 135 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 1.6E-26 T 11-11-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 vm_RS00420 e699bc12ce58e70180b0729b289e22ea 135 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 1.6E-26 T 11-11-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 vm_RS00420 e699bc12ce58e70180b0729b289e22ea 135 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 1.6E-26 T 11-11-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 vm_RS00420 e699bc12ce58e70180b0729b289e22ea 135 Pfam PF02416 mttA/Hcf106 family 4 36 3.7E-6 T 11-11-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 vm_RS00420 e699bc12ce58e70180b0729b289e22ea 135 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 132 18.5 T 11-11-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 vm_RS09095 fe5ed3a32298f28b37972d68f549839a 301 Pfam PF03956 Membrane protein of unknown function (DUF340) 112 297 6.8E-55 T 11-11-2016 IPR005642 Lysine exporter LysO vm_RS09095 fe5ed3a32298f28b37972d68f549839a 301 ProDom PD022789 MEMBRANE SURFACE PRECURSOR SIGNAL PROTEIN YBJE TRANSMEMBRANE INNER PREDICTED STY0934 147 299 3.0E-79 T 11-11-2016 IPR005642 Lysine exporter LysO vm_RS05560 351665d180fde4d3e842153366c5693d 530 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 1 515 1.2E-295 T 11-11-2016 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 vm_RS05560 351665d180fde4d3e842153366c5693d 530 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 530 375.286 T 11-11-2016 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 vm_RS05560 351665d180fde4d3e842153366c5693d 530 TIGRFAM TIGR00774 NhaB: Na+/H+ antiporter NhaB 1 516 5.6E-301 T 11-11-2016 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 vm_RS03565 262889b062a426f398c7e31316fd2b5e 369 PIRSF PIRSF001259 3 369 4.1E-132 T 11-11-2016 vm_RS03565 262889b062a426f398c7e31316fd2b5e 369 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 7 199 1.7E-75 T 11-11-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS03565 262889b062a426f398c7e31316fd2b5e 369 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 3.3E-85 T 11-11-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS03565 262889b062a426f398c7e31316fd2b5e 369 SUPERFAMILY SSF142695 205 367 3.79E-48 T 11-11-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 vm_RS03565 262889b062a426f398c7e31316fd2b5e 369 Gene3D G3DSA:3.90.870.10 2 211 5.9E-101 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain vm_RS03565 262889b062a426f398c7e31316fd2b5e 369 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.161 T 11-11-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 vm_RS03565 262889b062a426f398c7e31316fd2b5e 369 Pfam PF00925 GTP cyclohydrolase II 207 367 4.6E-42 T 11-11-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539 vm_RS03565 262889b062a426f398c7e31316fd2b5e 369 SUPERFAMILY SSF55821 3 202 5.26E-87 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain vm_RS12145 270d7b82504e59fce479bcb734ece478 343 Pfam PF08402 TOBE domain 276 342 1.1E-7 T 11-11-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 vm_RS12145 270d7b82504e59fce479bcb734ece478 343 SMART SM00382 29 214 3.8E-19 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS12145 270d7b82504e59fce479bcb734ece478 343 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS12145 270d7b82504e59fce479bcb734ece478 343 SUPERFAMILY SSF50331 264 342 2.98E-8 T 11-11-2016 IPR008995 Molybdate/tungstate binding, C-terminal vm_RS12145 270d7b82504e59fce479bcb734ece478 343 Gene3D G3DSA:3.40.50.300 4 235 3.4E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12145 270d7b82504e59fce479bcb734ece478 343 Pfam PF00005 ABC transporter 20 164 2.3E-35 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS12145 270d7b82504e59fce479bcb734ece478 343 SUPERFAMILY SSF52540 5 242 1.14E-79 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12910 09437c24404ad4143e942f50f90bc088 290 Gene3D G3DSA:1.10.10.10 6 61 7.4E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12910 09437c24404ad4143e942f50f90bc088 290 Pfam PF13280 WYL domain 120 285 2.0E-18 T 11-11-2016 IPR026881 WYL domain vm_RS00855 98bcf34c1330a27deb53a0c8fc2639cf 308 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 157 296 1.7E-50 T 11-11-2016 IPR012660 Thioesterase, putative vm_RS00855 98bcf34c1330a27deb53a0c8fc2639cf 308 SUPERFAMILY SSF55729 2 160 2.09E-29 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS00855 98bcf34c1330a27deb53a0c8fc2639cf 308 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 164 296 5.9E-44 T 11-11-2016 IPR012660 Thioesterase, putative vm_RS00855 98bcf34c1330a27deb53a0c8fc2639cf 308 SUPERFAMILY SSF54637 154 296 8.96E-39 T 11-11-2016 IPR029069 HotDog domain vm_RS00855 98bcf34c1330a27deb53a0c8fc2639cf 308 Pfam PF13673 Acetyltransferase (GNAT) domain 59 144 2.3E-11 T 11-11-2016 IPR000182 GNAT domain GO:0008080 vm_RS00855 98bcf34c1330a27deb53a0c8fc2639cf 308 Gene3D G3DSA:3.40.630.30 5 144 3.9E-26 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS00855 98bcf34c1330a27deb53a0c8fc2639cf 308 Gene3D G3DSA:3.10.129.10 145 297 4.5E-62 T 11-11-2016 IPR029069 HotDog domain vm_RS08100 65080ea8f8cf44a55218f70c3df56db3 378 Gene3D G3DSA:2.60.120.10 213 352 4.5E-28 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS08100 65080ea8f8cf44a55218f70c3df56db3 378 Gene3D G3DSA:2.60.120.10 67 165 8.3E-21 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS08100 65080ea8f8cf44a55218f70c3df56db3 378 Pfam PF04209 homogentisate 1,2-dioxygenase 55 375 2.6E-23 T 11-11-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|Reactome: R-HSA-71182 vm_RS08100 65080ea8f8cf44a55218f70c3df56db3 378 SUPERFAMILY SSF51182 69 376 1.78E-89 T 11-11-2016 IPR011051 RmlC-like cupin domain vm_RS11445 6f659bd0a0ff4df68d8993d1f83129ef 243 SUPERFAMILY SSF75217 5 175 2.62E-36 T 11-11-2016 IPR029028 Alpha/beta knot methyltransferases vm_RS11445 6f659bd0a0ff4df68d8993d1f83129ef 243 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 239 1.1E-83 T 11-11-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 vm_RS11445 6f659bd0a0ff4df68d8993d1f83129ef 243 Pfam PF00588 SpoU rRNA Methylase family 5 154 1.8E-32 T 11-11-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 vm_RS11445 6f659bd0a0ff4df68d8993d1f83129ef 243 PIRSF PIRSF004808 1 243 6.2E-74 T 11-11-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 vm_RS11445 6f659bd0a0ff4df68d8993d1f83129ef 243 Gene3D G3DSA:3.40.1280.10 3 158 1.4E-31 T 11-11-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal vm_RS10735 0994f63c68f52f5c1ff2a34c1639a446 149 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 145 1.0E-47 T 11-11-2016 IPR003791 Protein of unknown function UPF0178 vm_RS10735 0994f63c68f52f5c1ff2a34c1639a446 149 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 30.637 T 11-11-2016 IPR003791 Protein of unknown function UPF0178 vm_RS10300 cceb840ef05a8b4ddaea4cc3d6c6e170 85 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 11-11-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site vm_RS10300 cceb840ef05a8b4ddaea4cc3d6c6e170 85 Gene3D G3DSA:3.30.1340.10 1 83 1.0E-31 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS10300 cceb840ef05a8b4ddaea4cc3d6c6e170 85 SUPERFAMILY SSF55594 1 82 3.01E-26 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS10300 cceb840ef05a8b4ddaea4cc3d6c6e170 85 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 39 54 - T 11-11-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site vm_RS10300 cceb840ef05a8b4ddaea4cc3d6c6e170 85 Pfam PF00381 PTS HPr component phosphorylation site 3 82 2.6E-26 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS10300 cceb840ef05a8b4ddaea4cc3d6c6e170 85 PRINTS PR00107 Phosphocarrier protein signature 13 29 6.5E-18 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS10300 cceb840ef05a8b4ddaea4cc3d6c6e170 85 PRINTS PR00107 Phosphocarrier protein signature 53 70 6.5E-18 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS10300 cceb840ef05a8b4ddaea4cc3d6c6e170 85 PRINTS PR00107 Phosphocarrier protein signature 38 53 6.5E-18 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS10300 cceb840ef05a8b4ddaea4cc3d6c6e170 85 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 81 5.0E-28 T 11-11-2016 IPR000032 Phosphocarrier protein HPr-like vm_RS03380 a48598fdc3fbccff3911134671303eca 403 PIRSF PIRSF005572 21 403 2.2E-57 T 11-11-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 vm_RS03380 a48598fdc3fbccff3911134671303eca 403 Gene3D G3DSA:3.90.1150.10 283 398 4.3E-26 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS03380 a48598fdc3fbccff3911134671303eca 403 TIGRFAM TIGR03392 FeS_syn_CsdA: cysteine desulfurase, catalytic subunit CsdA 4 403 1.1E-157 T 11-11-2016 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA GO:0016226|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 vm_RS03380 a48598fdc3fbccff3911134671303eca 403 Pfam PF00266 Aminotransferase class-V 24 392 1.3E-155 T 11-11-2016 IPR000192 Aminotransferase class V domain vm_RS03380 a48598fdc3fbccff3911134671303eca 403 SUPERFAMILY SSF53383 3 400 5.85E-128 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS03380 a48598fdc3fbccff3911134671303eca 403 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 6 401 9.6E-171 T 11-11-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 vm_RS03380 a48598fdc3fbccff3911134671303eca 403 Gene3D G3DSA:3.40.640.10 35 282 5.7E-85 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS12460 7a6f27f8436717385bc9ae8173fc6a03 65 Pfam PF02599 Global regulator protein family 1 52 2.1E-26 T 11-11-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 vm_RS12460 7a6f27f8436717385bc9ae8173fc6a03 65 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 48 4.0E-20 T 11-11-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 vm_RS12460 7a6f27f8436717385bc9ae8173fc6a03 65 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 57 6.2E-30 T 11-11-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 vm_RS12460 7a6f27f8436717385bc9ae8173fc6a03 65 SUPERFAMILY SSF117130 1 54 6.93E-21 T 11-11-2016 vm_RS12460 7a6f27f8436717385bc9ae8173fc6a03 65 Hamap MF_00167 Carbon storage regulator [csrA]. 1 62 20.37 T 11-11-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 vm_RS08205 1d15c13fbce7144d85e4ef6cf6aa0cfb 68 Pfam PF04400 Protein of unknown function (DUF539) 21 62 5.8E-21 T 11-11-2016 IPR007495 (Na+)-NQR maturation factor NqrM vm_RS01825 489d7c6abdb5cf9dc5e05cde563c81e6 255 SUPERFAMILY SSF53850 18 249 4.45E-21 T 11-11-2016 vm_RS01825 489d7c6abdb5cf9dc5e05cde563c81e6 255 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 249 7.1E-7 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS01825 489d7c6abdb5cf9dc5e05cde563c81e6 255 Gene3D G3DSA:3.40.190.10 26 112 1.4E-8 T 11-11-2016 vm_RS01825 489d7c6abdb5cf9dc5e05cde563c81e6 255 Gene3D G3DSA:3.40.190.10 204 249 1.4E-8 T 11-11-2016 vm_RS07430 ba90ceba037dda215aa79fb3fd72d280 878 Pfam PF02470 MlaD protein 640 704 1.1E-5 T 11-11-2016 IPR003399 Mce/MlaD vm_RS07430 ba90ceba037dda215aa79fb3fd72d280 878 Pfam PF02470 MlaD protein 164 224 1.3E-7 T 11-11-2016 IPR003399 Mce/MlaD vm_RS07430 ba90ceba037dda215aa79fb3fd72d280 878 Pfam PF02470 MlaD protein 747 816 2.0E-8 T 11-11-2016 IPR003399 Mce/MlaD vm_RS07430 ba90ceba037dda215aa79fb3fd72d280 878 Pfam PF02470 MlaD protein 398 462 5.1E-9 T 11-11-2016 IPR003399 Mce/MlaD vm_RS07430 ba90ceba037dda215aa79fb3fd72d280 878 Pfam PF02470 MlaD protein 287 374 2.2E-8 T 11-11-2016 IPR003399 Mce/MlaD vm_RS07430 ba90ceba037dda215aa79fb3fd72d280 878 Pfam PF02470 MlaD protein 47 138 6.3E-12 T 11-11-2016 IPR003399 Mce/MlaD vm_RS09465 ccca1a636f942abe8f9e22c8b086fb4a 260 SMART SM00342 172 253 2.2E-20 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS09465 ccca1a636f942abe8f9e22c8b086fb4a 260 Pfam PF12833 Helix-turn-helix domain 178 254 2.3E-16 T 11-11-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 vm_RS09465 ccca1a636f942abe8f9e22c8b086fb4a 260 SUPERFAMILY SSF46689 207 255 5.38E-10 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS09465 ccca1a636f942abe8f9e22c8b086fb4a 260 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 208 249 - T 11-11-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 vm_RS09465 ccca1a636f942abe8f9e22c8b086fb4a 260 Gene3D G3DSA:1.10.10.60 207 255 5.7E-13 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS01465 d69f5d4cf1020aaf3b6b71b9d240c44e 551 SUPERFAMILY SSF56176 469 540 2.38E-6 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 vm_RS01465 d69f5d4cf1020aaf3b6b71b9d240c44e 551 Gene3D G3DSA:3.30.70.1450 392 455 8.0E-7 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS01465 d69f5d4cf1020aaf3b6b71b9d240c44e 551 Pfam PF03471 Transporter associated domain 467 540 2.6E-5 T 11-11-2016 IPR005170 Transporter-associated domain vm_RS01465 d69f5d4cf1020aaf3b6b71b9d240c44e 551 Pfam PF00999 Sodium/hydrogen exchanger family 29 356 1.2E-51 T 11-11-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 vm_RS01465 d69f5d4cf1020aaf3b6b71b9d240c44e 551 Pfam PF02080 TrkA-C domain 387 454 1.2E-11 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS01465 d69f5d4cf1020aaf3b6b71b9d240c44e 551 SUPERFAMILY SSF116726 383 454 4.58E-10 T 11-11-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 vm_RS01465 d69f5d4cf1020aaf3b6b71b9d240c44e 551 Gene3D G3DSA:3.30.465.10 470 539 8.5E-7 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 vm_RS01465 d69f5d4cf1020aaf3b6b71b9d240c44e 551 Hamap MF_01075 K(+)/H(+) antiporter NhaP2 [nhaP2]. 1 545 47.124 T 11-11-2016 IPR023729 K(+)/H(+) antiporter NhaP2 GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0016021 vm_RS01465 d69f5d4cf1020aaf3b6b71b9d240c44e 551 SMART SM01091 463 542 1.4E-6 T 11-11-2016 IPR005170 Transporter-associated domain vm_RS13545 8aa81f6dd5949733ccebad8895bdf367 214 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 208 2.3E-20 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS13545 8aa81f6dd5949733ccebad8895bdf367 214 Gene3D G3DSA:1.10.10.10 131 212 4.6E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS13545 8aa81f6dd5949733ccebad8895bdf367 214 SUPERFAMILY SSF46894 139 211 6.8E-20 T 11-11-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 vm_RS13545 8aa81f6dd5949733ccebad8895bdf367 214 SMART SM00421 152 209 5.7E-20 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS13545 8aa81f6dd5949733ccebad8895bdf367 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 4.4E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS13545 8aa81f6dd5949733ccebad8895bdf367 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 4.4E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS13545 8aa81f6dd5949733ccebad8895bdf367 214 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 4.4E-12 T 11-11-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 vm_RS13480 ce8bac794b3f859cf63cd87361d522e0 159 Pfam PF13633 Prokaryotic N-terminal methylation site 4 28 8.8E-9 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS13480 ce8bac794b3f859cf63cd87361d522e0 159 SUPERFAMILY SSF54523 7 103 1.02E-12 T 11-11-2016 vm_RS13480 ce8bac794b3f859cf63cd87361d522e0 159 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS13480 ce8bac794b3f859cf63cd87361d522e0 159 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 26 7.6E-8 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS13480 ce8bac794b3f859cf63cd87361d522e0 159 Gene3D G3DSA:3.30.700.10 7 46 7.6E-6 T 11-11-2016 vm_RS05845 a17cadd32e48711a930fb5169d157500 528 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 7 501 3.8E-177 T 11-11-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 vm_RS04315 a6fa26aa0ba4738d4c83ac55041dfa6b 166 Pfam PF03748 Flagellar basal body-associated protein FliL 65 166 5.0E-21 T 11-11-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 vm_RS11515 f79d2c2efdbe08304a8aece107ee3d66 252 Pfam PF03932 CutC family 4 205 3.4E-90 T 11-11-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 vm_RS11515 f79d2c2efdbe08304a8aece107ee3d66 252 SUPERFAMILY SSF110395 4 249 3.01E-70 T 11-11-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 vm_RS11515 f79d2c2efdbe08304a8aece107ee3d66 252 Gene3D G3DSA:3.20.20.380 4 249 5.1E-91 T 11-11-2016 IPR023648 Copper homeostasis CutC domain GO:0005507|GO:0055070 Reactome: R-HSA-936837 vm_RS11515 f79d2c2efdbe08304a8aece107ee3d66 252 Hamap MF_00795 Copper homeostasis protein CutC [cutC]. 3 247 40.512 T 11-11-2016 IPR005627 Copper homeostasis protein CutC GO:0005507|GO:0055070 Reactome: R-HSA-936837 vm_RS12985 dec168405db54b600b3d97004c5a8010 298 Pfam PF03466 LysR substrate binding domain 88 292 5.0E-25 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS12985 dec168405db54b600b3d97004c5a8010 298 Gene3D G3DSA:1.10.10.10 3 88 8.0E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12985 dec168405db54b600b3d97004c5a8010 298 SUPERFAMILY SSF53850 89 295 4.89E-26 T 11-11-2016 vm_RS12985 dec168405db54b600b3d97004c5a8010 298 Gene3D G3DSA:3.40.190.10 92 189 6.4E-14 T 11-11-2016 vm_RS12985 dec168405db54b600b3d97004c5a8010 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 6.0E-16 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS12985 dec168405db54b600b3d97004c5a8010 298 SUPERFAMILY SSF46785 3 88 1.56E-17 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS02205 5d4acd841dc182b4d97ba0ccf167bf9d 122 Pfam PF10973 Protein of unknown function (DUF2799) 27 115 7.1E-16 T 11-11-2016 IPR021242 Protein of unknown function DUF2799 vm_RS05905 31fbf2e0361dd820720ea55b865710a5 190 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 2 175 2.1E-42 T 11-11-2016 IPR011978 Uncharacterised protein family UPF0149 vm_RS05905 31fbf2e0361dd820720ea55b865710a5 190 Pfam PF03695 Uncharacterised protein family (UPF0149) 3 179 1.6E-40 T 11-11-2016 IPR011978 Uncharacterised protein family UPF0149 vm_RS05905 31fbf2e0361dd820720ea55b865710a5 190 SUPERFAMILY SSF101327 2 177 4.58E-34 T 11-11-2016 IPR011978 Uncharacterised protein family UPF0149 vm_RS12570 5ff36cbeec0f50ccabb6676247c1d233 117 TIGRFAM TIGR00526 folB_dom: FolB domain 1 116 8.8E-38 T 11-11-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS12570 5ff36cbeec0f50ccabb6676247c1d233 117 Gene3D G3DSA:3.30.1130.10 1 116 5.9E-44 T 11-11-2016 vm_RS12570 5ff36cbeec0f50ccabb6676247c1d233 117 SUPERFAMILY SSF55620 1 116 8.34E-38 T 11-11-2016 vm_RS12570 5ff36cbeec0f50ccabb6676247c1d233 117 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 2 114 5.1E-30 T 11-11-2016 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS12570 5ff36cbeec0f50ccabb6676247c1d233 117 Pfam PF02152 Dihydroneopterin aldolase 4 113 6.8E-33 T 11-11-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS12570 5ff36cbeec0f50ccabb6676247c1d233 117 SMART SM00905 4 114 4.7E-50 T 11-11-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539 vm_RS14545 ab0243524123a45831de106b35e9a5c0 653 Gene3D G3DSA:1.10.3470.10 338 652 1.4E-70 T 11-11-2016 IPR029022 ABC transporter, BtuC-like vm_RS14545 ab0243524123a45831de106b35e9a5c0 653 Gene3D G3DSA:1.10.3470.10 4 325 1.7E-64 T 11-11-2016 IPR029022 ABC transporter, BtuC-like vm_RS14545 ab0243524123a45831de106b35e9a5c0 653 SUPERFAMILY SSF81345 337 648 1.12E-61 T 11-11-2016 IPR029022 ABC transporter, BtuC-like vm_RS14545 ab0243524123a45831de106b35e9a5c0 653 Pfam PF01032 FecCD transport family 372 648 4.2E-66 T 11-11-2016 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 vm_RS14545 ab0243524123a45831de106b35e9a5c0 653 Pfam PF01032 FecCD transport family 12 323 6.1E-62 T 11-11-2016 IPR000522 ABC transporter, FecCD-like GO:0005215|GO:0016020 vm_RS14545 ab0243524123a45831de106b35e9a5c0 653 SUPERFAMILY SSF81345 4 323 6.28E-56 T 11-11-2016 IPR029022 ABC transporter, BtuC-like vm_RS19990 b2ec2d39dda7892fea72d28d70b88d19 253 SUPERFAMILY SSF103190 2 137 1.73E-30 T 11-11-2016 IPR029151 Periplasmic sensor domain-like vm_RS19990 b2ec2d39dda7892fea72d28d70b88d19 253 Gene3D G3DSA:3.30.450.20 52 90 7.3E-6 T 11-11-2016 vm_RS05225 a72d530c559b996c73ae93dc04dc51a9 180 Pfam PF01569 PAP2 superfamily 85 155 1.6E-12 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase vm_RS05225 a72d530c559b996c73ae93dc04dc51a9 180 Gene3D G3DSA:1.20.144.10 36 153 8.5E-23 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase vm_RS05225 a72d530c559b996c73ae93dc04dc51a9 180 SMART SM00014 54 154 2.9E-6 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase vm_RS05225 a72d530c559b996c73ae93dc04dc51a9 180 SUPERFAMILY SSF48317 24 154 1.7E-26 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase vm_RS05655 3824988b8ebdea7ec505a4192c91a2e0 747 Pfam PF03772 Competence protein 208 464 1.4E-57 T 11-11-2016 IPR004477 ComEC/Rec2-related protein vm_RS05655 3824988b8ebdea7ec505a4192c91a2e0 747 SUPERFAMILY SSF56281 492 726 5.28E-44 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS05655 3824988b8ebdea7ec505a4192c91a2e0 747 Pfam PF13567 Domain of unknown function (DUF4131) 18 172 3.3E-10 T 11-11-2016 IPR025405 Domain of unknown function DUF4131 vm_RS05655 3824988b8ebdea7ec505a4192c91a2e0 747 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 230 402 7.6E-26 T 11-11-2016 IPR004477 ComEC/Rec2-related protein vm_RS05655 3824988b8ebdea7ec505a4192c91a2e0 747 SMART SM00849 501 684 6.1E-9 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS05655 3824988b8ebdea7ec505a4192c91a2e0 747 Pfam PF00753 Metallo-beta-lactamase superfamily 499 675 1.7E-14 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS05655 3824988b8ebdea7ec505a4192c91a2e0 747 Gene3D G3DSA:3.60.15.10 479 710 1.9E-27 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS05655 3824988b8ebdea7ec505a4192c91a2e0 747 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 132 713 4.6E-129 T 11-11-2016 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 vm_RS02555 e356988fd2580e9e498de6c0a93dbbd4 409 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 13 326 3.0E-38 T 11-11-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 vm_RS02555 e356988fd2580e9e498de6c0a93dbbd4 409 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 11-11-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 vm_RS02555 e356988fd2580e9e498de6c0a93dbbd4 409 Gene3D G3DSA:3.40.50.720 120 297 4.8E-64 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS02555 e356988fd2580e9e498de6c0a93dbbd4 409 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site vm_RS02555 e356988fd2580e9e498de6c0a93dbbd4 409 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 118 294 5.6E-53 T 11-11-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 vm_RS02555 e356988fd2580e9e498de6c0a93dbbd4 409 SUPERFAMILY SSF52283 7 136 3.59E-49 T 11-11-2016 vm_RS02555 e356988fd2580e9e498de6c0a93dbbd4 409 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 11-11-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site vm_RS02555 e356988fd2580e9e498de6c0a93dbbd4 409 SUPERFAMILY SSF51735 108 295 7.8E-59 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS02555 e356988fd2580e9e498de6c0a93dbbd4 409 Gene3D G3DSA:3.40.50.720 8 119 2.2E-37 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS02555 e356988fd2580e9e498de6c0a93dbbd4 409 Gene3D G3DSA:3.30.70.260 324 408 1.6E-29 T 11-11-2016 vm_RS02555 e356988fd2580e9e498de6c0a93dbbd4 409 SUPERFAMILY SSF55021 333 408 2.37E-18 T 11-11-2016 vm_RS12035 aae1131111ac795bc432f6b72b343810 481 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 28 442 2.9E-98 T 11-11-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 vm_RS12035 aae1131111ac795bc432f6b72b343810 481 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 58 441 1.3E-95 T 11-11-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 vm_RS12035 aae1131111ac795bc432f6b72b343810 481 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 340 354 7.8E-27 T 11-11-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 vm_RS12035 aae1131111ac795bc432f6b72b343810 481 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 355 369 7.8E-27 T 11-11-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 vm_RS12035 aae1131111ac795bc432f6b72b343810 481 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 281 303 7.8E-27 T 11-11-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 vm_RS12035 aae1131111ac795bc432f6b72b343810 481 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 419 432 7.8E-27 T 11-11-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 vm_RS12035 aae1131111ac795bc432f6b72b343810 481 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 63 82 7.8E-27 T 11-11-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 vm_RS12035 aae1131111ac795bc432f6b72b343810 481 Gene3D G3DSA:3.40.710.10 222 449 3.5E-56 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS12035 aae1131111ac795bc432f6b72b343810 481 Gene3D G3DSA:3.40.710.10 34 80 4.0E-4 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS12035 aae1131111ac795bc432f6b72b343810 481 SUPERFAMILY SSF56601 28 444 5.64E-86 T 11-11-2016 IPR012338 Beta-lactamase/transpeptidase-like vm_RS06215 aac270b205044f5210f0adbcbdad12ef 243 SUPERFAMILY SSF52317 1 210 1.18E-38 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS06215 aac270b205044f5210f0adbcbdad12ef 243 Gene3D G3DSA:3.40.50.880 1 233 1.5E-67 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS06215 aac270b205044f5210f0adbcbdad12ef 243 Pfam PF03575 Peptidase family S51 3 208 1.3E-49 T 11-11-2016 IPR005320 Peptidase S51 GO:0006508|GO:0008236 vm_RS03615 dc969d94a3fbaf5929d72600cac465ac 243 Hamap MF_01220_B Uridylate kinase [pyrH]. 7 240 44.259 T 11-11-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 vm_RS03615 dc969d94a3fbaf5929d72600cac465ac 243 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 9 240 1.7E-102 T 11-11-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 vm_RS03615 dc969d94a3fbaf5929d72600cac465ac 243 PIRSF PIRSF005650 4 243 5.6E-89 T 11-11-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 vm_RS03615 dc969d94a3fbaf5929d72600cac465ac 243 SUPERFAMILY SSF53633 7 240 7.72E-72 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS03615 dc969d94a3fbaf5929d72600cac465ac 243 Gene3D G3DSA:3.40.1160.10 2 240 4.6E-87 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS03615 dc969d94a3fbaf5929d72600cac465ac 243 Pfam PF00696 Amino acid kinase family 11 219 9.1E-27 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS14300 e78672d0cc7a35c60f16fc568c6dd55b 391 PIRSF PIRSF000390 3 390 4.0E-115 T 11-11-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase vm_RS14300 e78672d0cc7a35c60f16fc568c6dd55b 391 SUPERFAMILY SSF53383 9 387 9.63E-101 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS14300 e78672d0cc7a35c60f16fc568c6dd55b 391 Gene3D G3DSA:3.40.640.10 9 255 2.2E-76 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS14300 e78672d0cc7a35c60f16fc568c6dd55b 391 Gene3D G3DSA:3.90.1150.10 257 383 2.1E-14 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS14300 e78672d0cc7a35c60f16fc568c6dd55b 391 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 13 382 4.5E-91 T 11-11-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase vm_RS06315 c67c7afd509641dbcc5b9591f0950e2d 268 Pfam PF00561 alpha/beta hydrolase fold 22 124 1.0E-20 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 vm_RS06315 c67c7afd509641dbcc5b9591f0950e2d 268 SUPERFAMILY SSF53474 18 263 2.29E-45 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS06315 c67c7afd509641dbcc5b9591f0950e2d 268 Gene3D G3DSA:3.40.50.1820 17 264 4.4E-44 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS06315 c67c7afd509641dbcc5b9591f0950e2d 268 PRINTS PR00412 Epoxide hydrolase signature 208 224 4.1E-5 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS06315 c67c7afd509641dbcc5b9591f0950e2d 268 PRINTS PR00412 Epoxide hydrolase signature 27 45 4.1E-5 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS06315 c67c7afd509641dbcc5b9591f0950e2d 268 PRINTS PR00412 Epoxide hydrolase signature 240 262 4.1E-5 T 11-11-2016 IPR000639 Epoxide hydrolase-like GO:0003824 vm_RS03140 cde06af066d6b2658bd8ce097b17b6e8 125 TIGRFAM TIGR04365 spare_glycyl: autonomous glycyl radical cofactor GrcA 2 125 1.4E-67 T 11-11-2016 IPR011140 Autonomous glycyl radical cofactor GrcA vm_RS03140 cde06af066d6b2658bd8ce097b17b6e8 125 Gene3D G3DSA:3.20.70.20 60 124 2.3E-33 T 11-11-2016 vm_RS03140 cde06af066d6b2658bd8ce097b17b6e8 125 SUPERFAMILY SSF51998 64 124 1.83E-23 T 11-11-2016 vm_RS03140 cde06af066d6b2658bd8ce097b17b6e8 125 ProSitePatterns PS00850 Glycine radical domain signature. 95 103 - T 11-11-2016 IPR019777 Formate C-acetyltransferase glycine radical, conserved site vm_RS03140 cde06af066d6b2658bd8ce097b17b6e8 125 PIRSF PIRSF000378 2 125 5.1E-54 T 11-11-2016 IPR011140 Autonomous glycyl radical cofactor GrcA vm_RS03140 cde06af066d6b2658bd8ce097b17b6e8 125 Pfam PF01228 Glycine radical 15 106 4.9E-24 T 11-11-2016 IPR001150 Glycine radical domain GO:0003824|GO:0008152 vm_RS03140 cde06af066d6b2658bd8ce097b17b6e8 125 Hamap MF_00806 Autonomous glycyl radical cofactor [grcA]. 1 125 40.997 T 11-11-2016 IPR011140 Autonomous glycyl radical cofactor GrcA vm_RS10155 bf94329de63537ef392879f81fa09dbb 1599 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 88 160 1.8E-24 T 11-11-2016 IPR020012 Motility protein FimV, N-terminal vm_RS10155 bf94329de63537ef392879f81fa09dbb 1599 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 1553 1595 5.5E-16 T 11-11-2016 IPR020011 Motility protein FimV, C-terminal vm_RS07815 e1a273b1dde8ea3450116a1585060d53 495 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 18 436 2.0E-118 T 11-11-2016 IPR002823 Protein of unknown function DUF112, transmembrane vm_RS13820 9aa15d2cdeed600e0b98d5a24aff36c3 395 SMART SM00244 85 245 2.0E-51 T 11-11-2016 IPR001107 Band 7 domain vm_RS13820 9aa15d2cdeed600e0b98d5a24aff36c3 395 PRINTS PR00721 Stomatin signature 92 114 6.8E-7 T 11-11-2016 IPR001972 Stomatin family GO:0016020 vm_RS13820 9aa15d2cdeed600e0b98d5a24aff36c3 395 PRINTS PR00721 Stomatin signature 139 160 6.8E-7 T 11-11-2016 IPR001972 Stomatin family GO:0016020 vm_RS13820 9aa15d2cdeed600e0b98d5a24aff36c3 395 PRINTS PR00721 Stomatin signature 195 218 6.8E-7 T 11-11-2016 IPR001972 Stomatin family GO:0016020 vm_RS13820 9aa15d2cdeed600e0b98d5a24aff36c3 395 Pfam PF01145 SPFH domain / Band 7 family 89 260 1.9E-31 T 11-11-2016 IPR001107 Band 7 domain vm_RS13820 9aa15d2cdeed600e0b98d5a24aff36c3 395 SUPERFAMILY SSF117892 118 250 1.18E-22 T 11-11-2016 IPR001107 Band 7 domain vm_RS13820 9aa15d2cdeed600e0b98d5a24aff36c3 395 TIGRFAM TIGR01933 hflK: HflK protein 87 347 1.8E-125 T 11-11-2016 IPR010201 HflK GO:0016021 vm_RS13820 9aa15d2cdeed600e0b98d5a24aff36c3 395 Pfam PF12221 Bacterial membrane protein N terminal 1 56 1.7E-14 T 11-11-2016 IPR020980 Menbrane protein HflK, N-terminal vm_RS04115 4db3658b2b164249a3b9c74595f3ab6d 356 Pfam PF01594 Domain of unknown function DUF20 20 345 1.1E-78 T 11-11-2016 IPR002549 Transmembrane protein TqsA-like vm_RS05240 3b144cb0dfe7eb7a987caead9b211612 221 Pfam PF01553 Acyltransferase 27 157 1.8E-19 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 vm_RS05240 3b144cb0dfe7eb7a987caead9b211612 221 Gene3D G3DSA:3.40.1130.10 29 188 1.1E-15 T 11-11-2016 vm_RS05240 3b144cb0dfe7eb7a987caead9b211612 221 SMART SM00563 38 160 2.1E-28 T 11-11-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 vm_RS05240 3b144cb0dfe7eb7a987caead9b211612 221 SUPERFAMILY SSF69593 7 204 1.96E-27 T 11-11-2016 vm_RS09025 cc201b914c00714c8e92ee193e8d4ed1 288 Gene3D G3DSA:3.20.20.410 5 274 6.3E-77 T 11-11-2016 IPR002763 Protein of unknown function DUF72 vm_RS09025 cc201b914c00714c8e92ee193e8d4ed1 288 Pfam PF01904 Protein of unknown function DUF72 23 262 7.3E-56 T 11-11-2016 IPR002763 Protein of unknown function DUF72 vm_RS09025 cc201b914c00714c8e92ee193e8d4ed1 288 SUPERFAMILY SSF117396 5 265 2.49E-74 T 11-11-2016 IPR002763 Protein of unknown function DUF72 vm_RS13920 ea448c4b477d152df43de01b3b24efe0 471 Pfam PF00939 Sodium:sulfate symporter transmembrane region 11 467 4.2E-49 T 11-11-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 vm_RS13920 ea448c4b477d152df43de01b3b24efe0 471 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 38 468 4.1E-81 T 11-11-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: R-HSA-433137 vm_RS11150 f2fa9f64d574e2fabdeb02a4c1553fd2 195 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 12 187 2.3E-38 T 11-11-2016 IPR018755 Bacteriophage Mu, Gp48 vm_RS01450 f2fa9f64d574e2fabdeb02a4c1553fd2 195 Pfam PF10076 Uncharacterised protein conserved in bacteria (DUF2313) 12 187 2.3E-38 T 11-11-2016 IPR018755 Bacteriophage Mu, Gp48 vm_RS09250 7fe97dcd6e4597a0365f3e0a91b5b454 268 Pfam PF07103 Protein of unknown function (DUF1365) 14 255 1.6E-69 T 11-11-2016 IPR010775 Protein of unknown function DUF1365 vm_RS03290 b8a87df9779b511f26a38d6738ebb646 483 SUPERFAMILY SSF56059 268 476 6.14E-40 T 11-11-2016 vm_RS03290 b8a87df9779b511f26a38d6738ebb646 483 Pfam PF14401 RimK-like ATPgrasp N-terminal domain 27 167 2.4E-42 T 11-11-2016 IPR025839 RimK-like ATPgrasp N-terminal domain vm_RS03290 b8a87df9779b511f26a38d6738ebb646 483 Gene3D G3DSA:3.30.1490.20 283 356 1.0E-10 T 11-11-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 vm_RS03290 b8a87df9779b511f26a38d6738ebb646 483 Gene3D G3DSA:3.30.470.20 276 282 7.2E-6 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS03290 b8a87df9779b511f26a38d6738ebb646 483 Gene3D G3DSA:3.30.470.20 357 454 7.2E-6 T 11-11-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 vm_RS03290 b8a87df9779b511f26a38d6738ebb646 483 Gene3D G3DSA:3.40.50.20 208 275 6.8E-9 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS03290 b8a87df9779b511f26a38d6738ebb646 483 Pfam PF08443 RimK-like ATP-grasp domain 277 455 8.7E-12 T 11-11-2016 IPR013651 ATP-grasp fold, RimK-type vm_RS01975 e27e0493fa345e5c0619c92bb100427c 92 PIRSF PIRSF002144 1 92 7.3E-32 T 11-11-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01975 e27e0493fa345e5c0619c92bb100427c 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 25.757 T 11-11-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01975 e27e0493fa345e5c0619c92bb100427c 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 6.9E-25 T 11-11-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01975 e27e0493fa345e5c0619c92bb100427c 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 6.9E-25 T 11-11-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01975 e27e0493fa345e5c0619c92bb100427c 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 6.9E-25 T 11-11-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01975 e27e0493fa345e5c0619c92bb100427c 92 Pfam PF00203 Ribosomal protein S19 3 83 2.9E-37 T 11-11-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01975 e27e0493fa345e5c0619c92bb100427c 92 Gene3D G3DSA:3.30.860.10 1 91 2.8E-41 T 11-11-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01975 e27e0493fa345e5c0619c92bb100427c 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 91 1.1E-46 T 11-11-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 vm_RS01975 e27e0493fa345e5c0619c92bb100427c 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 11-11-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS01975 e27e0493fa345e5c0619c92bb100427c 92 SUPERFAMILY SSF54570 3 84 1.01E-35 T 11-11-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS13275 64cd93c8470b8cb90cccd547b859a37e 265 Gene3D G3DSA:2.60.120.260 52 128 2.1E-6 T 11-11-2016 IPR008979 Galactose-binding domain-like vm_RS13275 64cd93c8470b8cb90cccd547b859a37e 265 SUPERFAMILY SSF49785 2 155 4.93E-20 T 11-11-2016 IPR008979 Galactose-binding domain-like vm_RS13455 595ee2b98523808dc55791acc114f460 1232 Gene3D G3DSA:2.60.120.200 288 529 2.3E-17 T 11-11-2016 IPR013320 Concanavalin A-like lectin/glucanase domain vm_RS13455 595ee2b98523808dc55791acc114f460 1232 SUPERFAMILY SSF49899 273 526 5.06E-24 T 11-11-2016 IPR013320 Concanavalin A-like lectin/glucanase domain vm_RS07040 3f42db55b1ccf2ce7b872cfc3552b871 116 Pfam PF04342 Putative member of DMT superfamily (DUF486) 8 111 4.8E-47 T 11-11-2016 IPR007437 Putative member of DMT superfamily vm_RS07040 3f42db55b1ccf2ce7b872cfc3552b871 116 PIRSF PIRSF021239 1 114 1.5E-57 T 11-11-2016 IPR007437 Putative member of DMT superfamily vm_RS10755 ed5a635de0888aa9364cf072f19d3aee 231 ProSitePatterns PS01318 TsaA-like domain signature. 85 96 - T 11-11-2016 IPR023368 Uncharacterised protein family UPF0066, conserved site vm_RS10755 ed5a635de0888aa9364cf072f19d3aee 231 SUPERFAMILY SSF118196 1 225 1.23E-77 T 11-11-2016 IPR023370 TsaA-like domain vm_RS10755 ed5a635de0888aa9364cf072f19d3aee 231 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 2 147 7.0E-48 T 11-11-2016 IPR023370 TsaA-like domain vm_RS10755 ed5a635de0888aa9364cf072f19d3aee 231 Gene3D G3DSA:2.40.30.70 3 157 3.7E-50 T 11-11-2016 IPR023370 TsaA-like domain vm_RS10755 ed5a635de0888aa9364cf072f19d3aee 231 Pfam PF01980 Uncharacterised protein family UPF0066 19 141 7.4E-40 T 11-11-2016 IPR023370 TsaA-like domain vm_RS11895 3c7b309b322d60afd6af7503758480ba 135 Pfam PF03603 DNA polymerase III psi subunit 4 128 2.0E-32 T 11-11-2016 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS11895 3c7b309b322d60afd6af7503758480ba 135 Gene3D G3DSA:3.40.50.10220 32 132 8.2E-35 T 11-11-2016 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS11895 3c7b309b322d60afd6af7503758480ba 135 ProDom PD032475 DNA POLYMERASE PSI SUBUNIT III TRANSFERASE NUCLEOTIDYLTRANSFERASE III 3D-STRUCTURE DNA-DIRECTED 39 127 0.002 T 11-11-2016 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS11895 3c7b309b322d60afd6af7503758480ba 135 SUPERFAMILY SSF102220 30 132 8.63E-29 T 11-11-2016 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS11895 3c7b309b322d60afd6af7503758480ba 135 PIRSF PIRSF029225 1 133 8.6E-44 T 11-11-2016 IPR004615 DNA polymerase III, psi subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS13230 e3aad298f1f3d8c38241881c09c62f66 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 2.6E-40 T 11-11-2016 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13230 e3aad298f1f3d8c38241881c09c62f66 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 1.3E-44 T 11-11-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13230 e3aad298f1f3d8c38241881c09c62f66 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.497 T 11-11-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13230 e3aad298f1f3d8c38241881c09c62f66 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 11-11-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13230 e3aad298f1f3d8c38241881c09c62f66 103 SUPERFAMILY SSF141091 1 102 9.94E-39 T 11-11-2016 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS03215 a0381d365a34a4bb4a0d3b3d527b6b4e 207 Pfam PF10144 Bacterial virulence factor haemolysin 6 152 5.5E-44 T 11-11-2016 IPR019305 Uncharacterised protein family Smp vm_RS04295 efa7637ee49f40577fb18b1d8160fbfe 266 PRINTS PR01003 Flagellar assembly protein FliH signature 217 233 1.7E-9 T 11-11-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 vm_RS04295 efa7637ee49f40577fb18b1d8160fbfe 266 PRINTS PR01003 Flagellar assembly protein FliH signature 127 146 1.7E-9 T 11-11-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 vm_RS04295 efa7637ee49f40577fb18b1d8160fbfe 266 PRINTS PR01003 Flagellar assembly protein FliH signature 147 164 1.7E-9 T 11-11-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 vm_RS04295 efa7637ee49f40577fb18b1d8160fbfe 266 PRINTS PR01003 Flagellar assembly protein FliH signature 85 107 1.7E-9 T 11-11-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 vm_RS04295 efa7637ee49f40577fb18b1d8160fbfe 266 PRINTS PR01003 Flagellar assembly protein FliH signature 108 126 1.7E-9 T 11-11-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 vm_RS04295 efa7637ee49f40577fb18b1d8160fbfe 266 Pfam PF02108 Flagellar assembly protein FliH 125 251 7.9E-34 T 11-11-2016 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE vm_RS12795 6b3a8e779b612008997d341bdcfba0ef 493 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 65 492 9.7E-165 T 11-11-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath vm_RS12795 6b3a8e779b612008997d341bdcfba0ef 493 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 20 492 6.6E-176 T 11-11-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath vm_RS13045 aed4782e75a2e2b731b689a96bb97fb7 368 Pfam PF00437 Type II/IV secretion system protein 115 268 4.9E-37 T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 vm_RS13045 aed4782e75a2e2b731b689a96bb97fb7 368 Gene3D G3DSA:3.40.50.300 100 342 1.5E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13045 aed4782e75a2e2b731b689a96bb97fb7 368 SUPERFAMILY SSF52540 4 334 4.24E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13045 aed4782e75a2e2b731b689a96bb97fb7 368 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 342 2.5E-126 T 11-11-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 vm_RS05805 389e06506146aa93d5663c6a565337b7 121 Pfam PF02810 SEC-C motif 104 121 5.2E-9 T 11-11-2016 IPR004027 SEC-C motif vm_RS05805 389e06506146aa93d5663c6a565337b7 121 SUPERFAMILY SSF54427 1 95 6.83E-28 T 11-11-2016 IPR032710 NTF2-like domain vm_RS05805 389e06506146aa93d5663c6a565337b7 121 SUPERFAMILY SSF103642 101 121 2.94E-7 T 11-11-2016 vm_RS05805 389e06506146aa93d5663c6a565337b7 121 Gene3D G3DSA:3.10.450.50 1 121 1.9E-40 T 11-11-2016 IPR032710 NTF2-like domain vm_RS07260 40fc9df3fcff5fb4645c26332f1a23c7 113 Pfam PF12290 Protein of unknown function (DUF3802) 2 109 2.9E-42 T 11-11-2016 IPR020979 Uncharacterised protein family A0KLC6 vm_RS14040 5479f1a3ec89ba371120a57321542c94 347 SUPERFAMILY SSF56176 8 197 2.53E-43 T 11-11-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 vm_RS14040 5479f1a3ec89ba371120a57321542c94 347 Pfam PF01565 FAD binding domain 24 153 1.3E-19 T 11-11-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 vm_RS14040 5479f1a3ec89ba371120a57321542c94 347 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 347 85.308 T 11-11-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS14040 5479f1a3ec89ba371120a57321542c94 347 Gene3D G3DSA:3.90.78.10 233 342 1.2E-43 T 11-11-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS14040 5479f1a3ec89ba371120a57321542c94 347 SUPERFAMILY SSF56194 205 342 1.31E-48 T 11-11-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS14040 5479f1a3ec89ba371120a57321542c94 347 Gene3D G3DSA:3.30.43.10 7 71 2.9E-21 T 11-11-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 vm_RS14040 5479f1a3ec89ba371120a57321542c94 347 Gene3D G3DSA:3.30.465.10 76 232 6.1E-53 T 11-11-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 vm_RS14040 5479f1a3ec89ba371120a57321542c94 347 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 9 332 6.3E-97 T 11-11-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS14040 5479f1a3ec89ba371120a57321542c94 347 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 209 330 3.1E-34 T 11-11-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS00105 c201feed395eaebbba47be91b65d1c02 548 SUPERFAMILY SSF52467 183 341 1.42E-55 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS00105 c201feed395eaebbba47be91b65d1c02 548 Gene3D G3DSA:3.40.50.970 345 546 3.0E-70 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS00105 c201feed395eaebbba47be91b65d1c02 548 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 188 322 5.7E-40 T 11-11-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 vm_RS00105 c201feed395eaebbba47be91b65d1c02 548 SUPERFAMILY SSF52518 1 177 6.43E-61 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS00105 c201feed395eaebbba47be91b65d1c02 548 Gene3D G3DSA:3.40.50.970 1 173 6.7E-72 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS00105 c201feed395eaebbba47be91b65d1c02 548 SUPERFAMILY SSF52518 358 545 7.51E-64 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS00105 c201feed395eaebbba47be91b65d1c02 548 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 412 431 - T 11-11-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 vm_RS00105 c201feed395eaebbba47be91b65d1c02 548 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 375 523 3.3E-47 T 11-11-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 vm_RS00105 c201feed395eaebbba47be91b65d1c02 548 Gene3D G3DSA:3.40.50.1220 178 340 1.6E-54 T 11-11-2016 IPR029035 DHS-like NAD/FAD-binding domain vm_RS00105 c201feed395eaebbba47be91b65d1c02 548 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 1 546 8.6E-209 T 11-11-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111 vm_RS00105 c201feed395eaebbba47be91b65d1c02 548 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 1 166 1.1E-55 T 11-11-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 vm_RS07410 f698d336c7856dea2242433261220cbb 161 Gene3D G3DSA:3.10.129.10 11 156 6.8E-25 T 11-11-2016 IPR029069 HotDog domain vm_RS07410 f698d336c7856dea2242433261220cbb 161 Pfam PF14539 Domain of unknown function (DUF4442) 17 78 1.0E-7 T 11-11-2016 IPR027961 Protein of unknown function DUF4442 vm_RS07410 f698d336c7856dea2242433261220cbb 161 SUPERFAMILY SSF54637 12 153 9.7E-14 T 11-11-2016 IPR029069 HotDog domain vm_RS11890 844d1dbdef85d70c711ff1a147683c1b 149 Pfam PF00583 Acetyltransferase (GNAT) family 49 121 1.3E-14 T 11-11-2016 IPR000182 GNAT domain GO:0008080 vm_RS11890 844d1dbdef85d70c711ff1a147683c1b 149 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 12 144 1.3E-39 T 11-11-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 vm_RS11890 844d1dbdef85d70c711ff1a147683c1b 149 Gene3D G3DSA:3.40.630.30 5 146 4.0E-32 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS11890 844d1dbdef85d70c711ff1a147683c1b 149 SUPERFAMILY SSF55729 2 146 2.03E-31 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS11310 7a621b7faf53a75a734c96a77b602909 516 PRINTS PR00175 Sodium/alanine symporter signature 189 207 1.1E-56 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS11310 7a621b7faf53a75a734c96a77b602909 516 PRINTS PR00175 Sodium/alanine symporter signature 217 236 1.1E-56 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS11310 7a621b7faf53a75a734c96a77b602909 516 PRINTS PR00175 Sodium/alanine symporter signature 365 387 1.1E-56 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS11310 7a621b7faf53a75a734c96a77b602909 516 PRINTS PR00175 Sodium/alanine symporter signature 86 108 1.1E-56 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS11310 7a621b7faf53a75a734c96a77b602909 516 PRINTS PR00175 Sodium/alanine symporter signature 304 322 1.1E-56 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS11310 7a621b7faf53a75a734c96a77b602909 516 PRINTS PR00175 Sodium/alanine symporter signature 428 448 1.1E-56 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS11310 7a621b7faf53a75a734c96a77b602909 516 TIGRFAM TIGR00835 agcS: amino acid carrier protein 13 462 7.5E-134 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS11310 7a621b7faf53a75a734c96a77b602909 516 Pfam PF01235 Sodium:alanine symporter family 50 471 1.3E-147 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS13325 0cadd582765e67c54a26d62b4f9fff2c 439 Pfam PF07804 HipA-like C-terminal domain 250 403 1.8E-29 T 11-11-2016 IPR012893 HipA-like, C-terminal vm_RS13325 0cadd582765e67c54a26d62b4f9fff2c 439 Pfam PF07805 HipA-like N-terminal domain 153 241 5.4E-18 T 11-11-2016 IPR012894 HipA, N-terminal subdomain 2 vm_RS13325 0cadd582765e67c54a26d62b4f9fff2c 439 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 17 111 4.7E-19 T 11-11-2016 IPR017508 HipA, N-terminal subdomain 1 vm_RS13325 0cadd582765e67c54a26d62b4f9fff2c 439 Pfam PF13657 HipA N-terminal domain 18 111 2.5E-14 T 11-11-2016 IPR017508 HipA, N-terminal subdomain 1 vm_RS07135 08e294595b964199c0c8202a851f7e1b 370 Pfam PF00753 Metallo-beta-lactamase superfamily 86 260 5.4E-15 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS07135 08e294595b964199c0c8202a851f7e1b 370 SUPERFAMILY SSF56281 70 309 2.94E-40 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS07135 08e294595b964199c0c8202a851f7e1b 370 Gene3D G3DSA:3.60.15.10 67 306 4.0E-41 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS07135 08e294595b964199c0c8202a851f7e1b 370 SMART SM00849 87 281 2.8E-19 T 11-11-2016 IPR001279 Metallo-beta-lactamase vm_RS07205 bdaf98439cede4864fb73c4f40210673 252 PIRSF PIRSF028069 1 252 2.9E-105 T 11-11-2016 IPR016866 Uncharacterised conserved protein UCP028069 vm_RS07205 bdaf98439cede4864fb73c4f40210673 252 Pfam PF11932 Protein of unknown function (DUF3450) 5 245 7.5E-85 T 11-11-2016 IPR016866 Uncharacterised conserved protein UCP028069 vm_RS12640 33119ce84a3f119c28698f4673abc348 345 Pfam PF13730 Helix-turn-helix domain 121 175 8.4E-6 T 11-11-2016 vm_RS00355 3a6246ae0f84549578f3e31440c8ef72 295 SUPERFAMILY SSF103481 35 131 1.7E-5 T 11-11-2016 vm_RS00355 3a6246ae0f84549578f3e31440c8ef72 295 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 11 274 3.6E-72 T 11-11-2016 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 vm_RS00355 3a6246ae0f84549578f3e31440c8ef72 295 SUPERFAMILY SSF103481 183 277 1.19E-6 T 11-11-2016 vm_RS00355 3a6246ae0f84549578f3e31440c8ef72 295 Pfam PF00892 EamA-like transporter family 139 276 4.4E-7 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.557 T 11-11-2016 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 PIRSF PIRSF002133 1 124 7.7E-54 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 PRINTS PR01034 Ribosomal protein S12 signature 94 110 7.1E-60 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 PRINTS PR01034 Ribosomal protein S12 signature 110 122 7.1E-60 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 PRINTS PR01034 Ribosomal protein S12 signature 77 94 7.1E-60 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 PRINTS PR01034 Ribosomal protein S12 signature 58 77 7.1E-60 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 PRINTS PR01034 Ribosomal protein S12 signature 27 42 7.1E-60 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 PRINTS PR01034 Ribosomal protein S12 signature 42 57 7.1E-60 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 SUPERFAMILY SSF50249 3 123 1.03E-51 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 2.5E-70 T 11-11-2016 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 Pfam PF00164 Ribosomal protein S12/S23 5 123 6.4E-43 T 11-11-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS13770 e7c5a46bfe4c3264e7058a488094437b 124 Gene3D G3DSA:2.40.50.140 1 123 3.4E-65 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS18290 d0b1daf55a9cd9aa4074a8b9099313f3 98 Gene3D G3DSA:1.20.1250.20 2 95 1.6E-5 T 11-11-2016 vm_RS18290 d0b1daf55a9cd9aa4074a8b9099313f3 98 SUPERFAMILY SSF103473 2 95 1.44E-6 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS01090 c16befc562fa5ec91bbd6dfadc83a022 917 Gene3D G3DSA:1.10.443.10 387 559 9.3E-8 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS01090 c16befc562fa5ec91bbd6dfadc83a022 917 Pfam PF00589 Phage integrase family 497 561 3.1E-5 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS01090 c16befc562fa5ec91bbd6dfadc83a022 917 Pfam PF13009 Putative phage integrase 121 431 1.6E-82 T 11-11-2016 IPR024965 Putative phage integrase vm_RS01090 c16befc562fa5ec91bbd6dfadc83a022 917 SUPERFAMILY SSF56349 496 559 2.12E-6 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS05830 871dbafe5c5876115eec21020ae98850 173 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 47.158 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 vm_RS05830 871dbafe5c5876115eec21020ae98850 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 2.8E-42 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 vm_RS05830 871dbafe5c5876115eec21020ae98850 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 2.8E-42 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 vm_RS05830 871dbafe5c5876115eec21020ae98850 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 2.8E-42 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 vm_RS05830 871dbafe5c5876115eec21020ae98850 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 2.8E-42 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 vm_RS05830 871dbafe5c5876115eec21020ae98850 173 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 2.8E-42 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 vm_RS05830 871dbafe5c5876115eec21020ae98850 173 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 11-11-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 vm_RS05830 871dbafe5c5876115eec21020ae98850 173 SUPERFAMILY SSF53098 3 156 6.07E-55 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS05830 871dbafe5c5876115eec21020ae98850 173 Gene3D G3DSA:3.30.420.10 3 156 6.9E-66 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS05830 871dbafe5c5876115eec21020ae98850 173 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 155 8.7E-74 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 vm_RS05830 871dbafe5c5876115eec21020ae98850 173 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 6.5E-62 T 11-11-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 vm_RS04575 8114304b613e9edeb9d4e42900c9e91a 198 SUPERFAMILY SSF54593 2 196 1.18E-64 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase vm_RS04575 8114304b613e9edeb9d4e42900c9e91a 198 Pfam PF06185 YecM protein 13 196 9.5E-67 T 11-11-2016 IPR010393 Protein of unknown function DUF991 vm_RS04575 8114304b613e9edeb9d4e42900c9e91a 198 Gene3D G3DSA:3.10.180.10 1 197 5.5E-71 T 11-11-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase vm_RS03725 80171c7a535b52d0ec5c03be4104924a 156 Gene3D G3DSA:3.30.420.10 2 149 6.3E-60 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS03725 80171c7a535b52d0ec5c03be4104924a 156 Pfam PF00075 RNase H 3 142 1.8E-53 T 11-11-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 vm_RS03725 80171c7a535b52d0ec5c03be4104924a 156 SUPERFAMILY SSF53098 3 143 2.15E-57 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS03725 80171c7a535b52d0ec5c03be4104924a 156 Hamap MF_00042 Ribonuclease H [rnhA]. 2 149 36.292 T 11-11-2016 IPR022892 Ribonuclease H GO:0004523 vm_RS02670 27c2d27b7668498e246881b325666479 243 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 6 238 5.3E-99 T 11-11-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 vm_RS02670 27c2d27b7668498e246881b325666479 243 Gene3D G3DSA:3.20.20.70 3 241 1.5E-112 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS02670 27c2d27b7668498e246881b325666479 243 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 243 133.713 T 11-11-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 vm_RS02670 27c2d27b7668498e246881b325666479 243 SUPERFAMILY SSF63892 4 241 5.1E-102 T 11-11-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 vm_RS02670 27c2d27b7668498e246881b325666479 243 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 6 238 5.8E-106 T 11-11-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2 vm_RS04385 407893d9b727eaa1674c3fa369f14ec3 87 Pfam PF08891 YfcL protein 4 84 4.1E-32 T 11-11-2016 IPR014987 Uncharacterised protein family YfcL vm_RS14385 eca90f07b4b270678042e457639e3291 399 Pfam PF04932 O-Antigen ligase 174 329 7.3E-17 T 11-11-2016 IPR007016 O-antigen ligase-related vm_RS06595 0eb567a6a2474816f78cac162dfa6dd3 444 SUPERFAMILY SSF161070 6 443 1.44E-117 T 11-11-2016 vm_RS06595 0eb567a6a2474816f78cac162dfa6dd3 444 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 43 62 1.5E-7 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS06595 0eb567a6a2474816f78cac162dfa6dd3 444 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 307 326 1.5E-7 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS06595 0eb567a6a2474816f78cac162dfa6dd3 444 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 14 35 1.5E-7 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS06595 0eb567a6a2474816f78cac162dfa6dd3 444 Pfam PF00209 Sodium:neurotransmitter symporter family 144 443 5.7E-27 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS06595 0eb567a6a2474816f78cac162dfa6dd3 444 Pfam PF00209 Sodium:neurotransmitter symporter family 6 123 7.7E-20 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS13240 c4b28dce072fdd76d98df29b124d9c20 468 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 3 466 2.6E-159 T 11-11-2016 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 vm_RS13240 c4b28dce072fdd76d98df29b124d9c20 468 PIRSF PIRSF006060 1 468 2.0E-46 T 11-11-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 vm_RS13240 c4b28dce072fdd76d98df29b124d9c20 468 Pfam PF13520 Amino acid permease 5 411 2.8E-68 T 11-11-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 vm_RS00175 e39bf693c500406df4fb4370938665be 315 Gene3D G3DSA:3.40.50.170 4 208 8.5E-76 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS00175 e39bf693c500406df4fb4370938665be 315 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 5 315 37.032 T 11-11-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 vm_RS00175 e39bf693c500406df4fb4370938665be 315 Gene3D G3DSA:3.10.25.10 210 307 1.6E-34 T 11-11-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS00175 e39bf693c500406df4fb4370938665be 315 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 5 312 4.4E-109 T 11-11-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 vm_RS00175 e39bf693c500406df4fb4370938665be 315 SUPERFAMILY SSF50486 208 310 4.55E-32 T 11-11-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 vm_RS00175 e39bf693c500406df4fb4370938665be 315 Pfam PF02911 Formyl transferase, C-terminal domain 207 303 2.2E-28 T 11-11-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS00175 e39bf693c500406df4fb4370938665be 315 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 136 159 - T 11-11-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS00175 e39bf693c500406df4fb4370938665be 315 Pfam PF00551 Formyl transferase 6 183 5.7E-48 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS00175 e39bf693c500406df4fb4370938665be 315 SUPERFAMILY SSF53328 5 210 3.92E-68 T 11-11-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 vm_RS03780 87b404e054e6d4ed1a8eb0c4ba1bff9b 46 Pfam PF11346 Protein of unknown function (DUF3149) 4 43 2.6E-16 T 11-11-2016 IPR021494 Protein of unknown function DUF3149 vm_RS09925 1b1d85b0fee5c18c46874e19ede52a68 358 Gene3D G3DSA:3.40.50.300 89 337 3.3E-107 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09925 1b1d85b0fee5c18c46874e19ede52a68 358 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 94 337 1.3E-101 T 11-11-2016 IPR019591 Mrp/NBP35 ATP-binding protein vm_RS09925 1b1d85b0fee5c18c46874e19ede52a68 358 SUPERFAMILY SSF52540 88 321 3.27E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09925 1b1d85b0fee5c18c46874e19ede52a68 358 Hamap MF_02040 Iron-sulfur cluster carrier protein. 89 338 36.889 T 11-11-2016 IPR019591 Mrp/NBP35 ATP-binding protein vm_RS09925 1b1d85b0fee5c18c46874e19ede52a68 358 ProSitePatterns PS01215 Mrp family signature. 201 217 - T 11-11-2016 IPR000808 Mrp, conserved site GO:0005524 vm_RS04690 9a8b521d547f5dd5cba0f16622bcd1fd 404 Pfam PF14559 Tetratricopeptide repeat 177 244 1.6E-7 T 11-11-2016 vm_RS04690 9a8b521d547f5dd5cba0f16622bcd1fd 404 SUPERFAMILY SSF48452 163 264 1.14E-12 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS04690 9a8b521d547f5dd5cba0f16622bcd1fd 404 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 3 117 4.7E-31 T 11-11-2016 IPR017560 Cytochrome c-type biogenesis protein CcmI vm_RS04690 9a8b521d547f5dd5cba0f16622bcd1fd 404 Gene3D G3DSA:1.25.40.10 161 203 1.4E-4 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS04690 9a8b521d547f5dd5cba0f16622bcd1fd 404 Gene3D G3DSA:1.25.40.10 204 288 4.8E-17 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS10865 46812aa3ba5c39c1f7542364ac9d5611 119 Pfam PF04355 SmpA / OmlA family 35 104 5.5E-26 T 11-11-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 vm_RS10865 46812aa3ba5c39c1f7542364ac9d5611 119 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 7 112 34.558 T 11-11-2016 IPR026592 Outer membrane protein assembly factor BamE vm_RS06065 0b97ab88f9d32e975d065f38e2642e01 494 Pfam PF00884 Sulfatase 5 322 7.6E-43 T 11-11-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 vm_RS06065 0b97ab88f9d32e975d065f38e2642e01 494 SUPERFAMILY SSF53649 4 373 9.29E-76 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 vm_RS06065 0b97ab88f9d32e975d065f38e2642e01 494 SUPERFAMILY SSF53649 438 477 9.29E-76 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 vm_RS06065 0b97ab88f9d32e975d065f38e2642e01 494 Gene3D G3DSA:3.40.720.10 5 368 5.5E-65 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 vm_RS11965 034927469ae3ace889faaa2408f60dde 898 SUPERFAMILY SSF50447 799 895 1.96E-34 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS11965 034927469ae3ace889faaa2408f60dde 898 SUPERFAMILY SSF46955 3 50 1.68E-12 T 11-11-2016 IPR009061 Putative DNA-binding domain vm_RS11965 034927469ae3ace889faaa2408f60dde 898 Gene3D G3DSA:3.40.50.10050 697 776 7.7E-26 T 11-11-2016 IPR023115 Translation initiation factor IF- 2, domain 3 vm_RS11965 034927469ae3ace889faaa2408f60dde 898 Gene3D G3DSA:2.40.30.10 799 895 8.9E-40 T 11-11-2016 vm_RS11965 034927469ae3ace889faaa2408f60dde 898 SUPERFAMILY SSF52540 391 565 4.86E-52 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11965 034927469ae3ace889faaa2408f60dde 898 SUPERFAMILY SSF50447 571 652 1.27E-24 T 11-11-2016 IPR009000 Translation protein, beta-barrel domain vm_RS11965 034927469ae3ace889faaa2408f60dde 898 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 61 99 1.1E-15 T 11-11-2016 IPR013575 Initiation factor 2 associated domain, bacterial vm_RS11965 034927469ae3ace889faaa2408f60dde 898 ProSitePatterns PS01176 Initiation factor 2 signature. 848 870 - T 11-11-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 vm_RS11965 034927469ae3ace889faaa2408f60dde 898 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 315 897 3.8E-285 T 11-11-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 vm_RS11965 034927469ae3ace889faaa2408f60dde 898 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 323 372 1.4E-14 T 11-11-2016 IPR006847 Translation initiation factor IF-2, N-terminal vm_RS11965 034927469ae3ace889faaa2408f60dde 898 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 50 2.6E-7 T 11-11-2016 IPR006847 Translation initiation factor IF-2, N-terminal vm_RS11965 034927469ae3ace889faaa2408f60dde 898 Pfam PF11987 Translation-initiation factor 2 682 787 1.0E-37 T 11-11-2016 IPR023115 Translation initiation factor IF- 2, domain 3 vm_RS11965 034927469ae3ace889faaa2408f60dde 898 Gene3D G3DSA:2.40.30.10 570 661 5.8E-23 T 11-11-2016 vm_RS11965 034927469ae3ace889faaa2408f60dde 898 Gene3D G3DSA:3.30.56.50 2 50 1.5E-22 T 11-11-2016 vm_RS11965 034927469ae3ace889faaa2408f60dde 898 SUPERFAMILY SSF52156 675 804 6.8E-39 T 11-11-2016 IPR023115 Translation initiation factor IF- 2, domain 3 vm_RS11965 034927469ae3ace889faaa2408f60dde 898 Gene3D G3DSA:3.40.50.300 389 557 1.7E-45 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS11965 034927469ae3ace889faaa2408f60dde 898 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 400 555 1.5E-32 T 11-11-2016 IPR005225 Small GTP-binding protein domain GO:0005525 vm_RS11965 034927469ae3ace889faaa2408f60dde 898 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 895 17.68 T 11-11-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 vm_RS11965 034927469ae3ace889faaa2408f60dde 898 Pfam PF00009 Elongation factor Tu GTP binding domain 401 558 3.7E-32 T 11-11-2016 vm_RS00290 4b53ec3d814f2bd3f0cd353c76790435 420 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 203 391 8.0E-46 T 11-11-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 vm_RS00290 4b53ec3d814f2bd3f0cd353c76790435 420 Gene3D G3DSA:3.20.20.70 183 396 2.8E-62 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS00290 4b53ec3d814f2bd3f0cd353c76790435 420 SUPERFAMILY SSF51391 192 392 4.71E-58 T 11-11-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 vm_RS00290 4b53ec3d814f2bd3f0cd353c76790435 420 Pfam PF02581 Thiamine monophosphate synthase/TENI 201 378 2.5E-51 T 11-11-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 vm_RS01740 1fbf313262bc03d8f666444b53a0cdba 84 Pfam PF12292 Protein of unknown function (DUF3624) 1 79 1.1E-37 T 11-11-2016 IPR022072 Protein of unknown function DUF3624 vm_RS13740 00546ef568bde59e47c7e6967ee6432f 122 Gene3D G3DSA:3.30.70.60 1 103 1.0E-42 T 11-11-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 vm_RS13740 00546ef568bde59e47c7e6967ee6432f 122 SUPERFAMILY SSF54995 1 103 1.44E-38 T 11-11-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13740 00546ef568bde59e47c7e6967ee6432f 122 Pfam PF01250 Ribosomal protein S6 3 91 1.3E-28 T 11-11-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13740 00546ef568bde59e47c7e6967ee6432f 122 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 1.1E-38 T 11-11-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS13740 00546ef568bde59e47c7e6967ee6432f 122 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 11-11-2016 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 vm_RS13740 00546ef568bde59e47c7e6967ee6432f 122 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 22.143 T 11-11-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 vm_RS04305 ed512c82883d91f57a7643d3b4505f0f 147 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 3 142 1.1E-33 T 11-11-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 vm_RS04305 ed512c82883d91f57a7643d3b4505f0f 147 Pfam PF02050 Flagellar FliJ protein 17 140 3.3E-30 T 11-11-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 vm_RS04090 90d82694f6fbd84944cc651858496b1b 138 Pfam PF09842 Predicted membrane protein (DUF2069) 11 113 1.0E-32 T 11-11-2016 IPR018643 Protein of unknown function DUF2069, membrane vm_RS04900 d782ef5d81a42ac2ad3b1cea4ada3e42 476 TIGRFAM TIGR02002 PTS-II-BC-glcB: PTS system, glucose-specific IIBC component 2 473 1.3E-198 T 11-11-2016 IPR011299 PTS system glucose-specific IIBC component GO:0005355|GO:0015758|GO:0016021 vm_RS04900 d782ef5d81a42ac2ad3b1cea4ada3e42 476 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 412 429 - T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 vm_RS04900 d782ef5d81a42ac2ad3b1cea4ada3e42 476 Pfam PF02378 Phosphotransferase system, EIIC 13 318 7.0E-75 T 11-11-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 vm_RS04900 d782ef5d81a42ac2ad3b1cea4ada3e42 476 Gene3D G3DSA:3.30.1360.60 397 472 4.4E-27 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS04900 d782ef5d81a42ac2ad3b1cea4ada3e42 476 Pfam PF00367 phosphotransferase system, EIIB 402 434 9.0E-13 T 11-11-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 vm_RS04900 d782ef5d81a42ac2ad3b1cea4ada3e42 476 TIGRFAM TIGR00826 EIIB_glc: PTS system, glucose-like IIB component 376 458 1.0E-20 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS04900 d782ef5d81a42ac2ad3b1cea4ada3e42 476 SUPERFAMILY SSF55604 399 472 9.02E-21 T 11-11-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 vm_RS12925 ad67388bd461472420d1772de815d51f 359 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 38 324 6.6E-74 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 vm_RS12925 ad67388bd461472420d1772de815d51f 359 PIRSF PIRSF039026 1 358 5.2E-132 T 11-11-2016 IPR026289 Solute binding protein, mannitol/chloroaromatic system-like vm_RS05060 d0f2468c7ad7dcd9afc5f9fdccca87db 615 SUPERFAMILY SSF55486 4 551 1.1E-71 T 11-11-2016 vm_RS05060 d0f2468c7ad7dcd9afc5f9fdccca87db 615 Gene3D G3DSA:1.10.1370.10 376 551 6.2E-24 T 11-11-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 vm_RS05060 d0f2468c7ad7dcd9afc5f9fdccca87db 615 Gene3D G3DSA:1.10.1370.10 128 261 6.2E-24 T 11-11-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 vm_RS05060 d0f2468c7ad7dcd9afc5f9fdccca87db 615 Pfam PF01432 Peptidase family M3 283 535 2.1E-15 T 11-11-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 vm_RS05060 d0f2468c7ad7dcd9afc5f9fdccca87db 615 Gene3D G3DSA:3.40.390.10 282 375 2.5E-12 T 11-11-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 vm_RS06295 c6eb782bf22e7cfdcde0e4fb0a9f6402 82 Pfam PF10692 Protein of unknown function (DUF2498) 3 80 1.3E-41 T 11-11-2016 IPR019633 Protein of unknown function DUF2498 vm_RS12775 18d25bb49338f8a9f685898966b80d7c 327 Pfam PF06996 Type VI secretion, VasB, ImpH, VC_A0111 17 310 2.2E-43 T 11-11-2016 IPR010732 Type VI secretion, TssG-like vm_RS06545 6fd0d8e3f0af3cd8445f810383a4d206 320 Gene3D G3DSA:1.10.3720.10 180 304 3.2E-17 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS06545 6fd0d8e3f0af3cd8445f810383a4d206 320 Gene3D G3DSA:1.10.3720.10 72 140 3.2E-17 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS06545 6fd0d8e3f0af3cd8445f810383a4d206 320 SUPERFAMILY SSF161098 177 298 3.6E-19 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS06545 6fd0d8e3f0af3cd8445f810383a4d206 320 SUPERFAMILY SSF161098 70 137 3.6E-19 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS06545 6fd0d8e3f0af3cd8445f810383a4d206 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 314 6.6E-41 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS10450 e5b9ec0157b476ea2f3cbc683b3c3c0f 464 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 20 464 1.8E-151 T 11-11-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase vm_RS10450 e5b9ec0157b476ea2f3cbc683b3c3c0f 464 Pfam PF13727 CoA-binding domain 62 238 1.4E-46 T 11-11-2016 vm_RS10450 e5b9ec0157b476ea2f3cbc683b3c3c0f 464 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 22 464 2.4E-173 T 11-11-2016 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 vm_RS10450 e5b9ec0157b476ea2f3cbc683b3c3c0f 464 SUPERFAMILY SSF51735 142 267 3.62E-9 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS10450 e5b9ec0157b476ea2f3cbc683b3c3c0f 464 Pfam PF02397 Bacterial sugar transferase 274 456 3.1E-57 T 11-11-2016 IPR003362 Bacterial sugar transferase vm_RS12415 e33e553b2d8a005b6a5f801e8127833f 93 Hamap MF_00404 Probable oxaloacetate decarboxylase gamma chain [oadG]. 1 93 36.212 T 11-11-2016 IPR023424 Oxaloacetate decarboxylase gamma chain, probable GO:0008948 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 vm_RS12415 e33e553b2d8a005b6a5f801e8127833f 93 TIGRFAM TIGR01195 oadG_fam: sodium pump decarboxylases, gamma subunit 13 89 9.3E-25 T 11-11-2016 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0071436 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 vm_RS12415 e33e553b2d8a005b6a5f801e8127833f 93 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 17 87 4.3E-21 T 11-11-2016 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0071436 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 vm_RS12235 b5d07c0eeefa94733f40b850bc345bce 305 SMART SM00382 29 212 9.4E-14 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS12235 b5d07c0eeefa94733f40b850bc345bce 305 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS12235 b5d07c0eeefa94733f40b850bc345bce 305 SUPERFAMILY SSF52540 3 229 9.35E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12235 b5d07c0eeefa94733f40b850bc345bce 305 Gene3D G3DSA:3.40.50.300 3 225 6.7E-70 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12235 b5d07c0eeefa94733f40b850bc345bce 305 Pfam PF00005 ABC transporter 20 164 1.1E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS03870 010caa95f428d7d7b7d0b9288c82d2a9 131 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 128 7.8E-29 T 11-11-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 vm_RS03870 010caa95f428d7d7b7d0b9288c82d2a9 131 PIRSF PIRSF002889 1 131 1.5E-33 T 11-11-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 vm_RS12195 ce677dea013141eac5aa531cd1053c2b 244 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 239 56.826 T 11-11-2016 IPR005224 Sugar fermentation stimulation protein vm_RS12195 ce677dea013141eac5aa531cd1053c2b 244 Pfam PF03749 Sugar fermentation stimulation protein 13 231 1.4E-77 T 11-11-2016 IPR005224 Sugar fermentation stimulation protein vm_RS12195 ce677dea013141eac5aa531cd1053c2b 244 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 6 229 3.0E-76 T 11-11-2016 IPR005224 Sugar fermentation stimulation protein vm_RS00735 6fbdbf06a7d8050c27f21b9eb152b3d4 265 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 74 82 - T 11-11-2016 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS00735 6fbdbf06a7d8050c27f21b9eb152b3d4 265 Hamap MF_00258 Glutamate racemase [murI]. 7 254 33.811 T 11-11-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS00735 6fbdbf06a7d8050c27f21b9eb152b3d4 265 Pfam PF01177 Asp/Glu/Hydantoin racemase 11 215 2.4E-27 T 11-11-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS00735 6fbdbf06a7d8050c27f21b9eb152b3d4 265 SUPERFAMILY SSF53681 8 108 7.19E-30 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS00735 6fbdbf06a7d8050c27f21b9eb152b3d4 265 SUPERFAMILY SSF53681 112 260 1.37E-34 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS00735 6fbdbf06a7d8050c27f21b9eb152b3d4 265 Gene3D G3DSA:3.40.50.1860 8 175 1.7E-46 T 11-11-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS00735 6fbdbf06a7d8050c27f21b9eb152b3d4 265 TIGRFAM TIGR00067 glut_race: glutamate racemase 9 224 5.3E-71 T 11-11-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS14380 2496dbcfd9853fb5a3cd98fb03ae9883 186 Gene3D G3DSA:2.160.10.10 8 179 2.1E-38 T 11-11-2016 vm_RS14380 2496dbcfd9853fb5a3cd98fb03ae9883 186 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 132 160 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 vm_RS14380 2496dbcfd9853fb5a3cd98fb03ae9883 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 124 158 7.5E-6 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS14380 2496dbcfd9853fb5a3cd98fb03ae9883 186 SUPERFAMILY SSF51161 66 179 1.39E-28 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS08895 ecd03c028619bcbd6885936db42d6e25 133 Gene3D G3DSA:3.40.50.300 20 126 3.5E-9 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08895 ecd03c028619bcbd6885936db42d6e25 133 SUPERFAMILY SSF52540 22 125 1.17E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06840 29e858498bbd1bc9853ed06bf509fe46 212 SUPERFAMILY SSF103647 28 79 2.22E-9 T 11-11-2016 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 vm_RS06840 29e858498bbd1bc9853ed06bf509fe46 212 PRINTS PR01021 OMPA domain signature 138 154 7.9E-9 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS06840 29e858498bbd1bc9853ed06bf509fe46 212 PRINTS PR01021 OMPA domain signature 93 115 7.9E-9 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS06840 29e858498bbd1bc9853ed06bf509fe46 212 PRINTS PR01021 OMPA domain signature 123 138 7.9E-9 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS06840 29e858498bbd1bc9853ed06bf509fe46 212 SUPERFAMILY SSF103088 65 192 2.35E-30 T 11-11-2016 IPR006665 OmpA-like domain vm_RS06840 29e858498bbd1bc9853ed06bf509fe46 212 Gene3D G3DSA:4.10.1080.10 48 78 1.6E-5 T 11-11-2016 IPR028974 TSP type-3 repeat GO:0005509 Reactome: R-HSA-186797 vm_RS06840 29e858498bbd1bc9853ed06bf509fe46 212 Gene3D G3DSA:3.30.1330.60 87 194 5.1E-30 T 11-11-2016 IPR006665 OmpA-like domain vm_RS06840 29e858498bbd1bc9853ed06bf509fe46 212 Pfam PF00691 OmpA family 92 187 2.8E-17 T 11-11-2016 IPR006665 OmpA-like domain vm_RS06240 86d05aae1ff1ff326a55c0cea6fb7775 483 Gene3D G3DSA:3.40.309.10 268 452 5.2E-66 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 vm_RS06240 86d05aae1ff1ff326a55c0cea6fb7775 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 11-11-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 vm_RS06240 86d05aae1ff1ff326a55c0cea6fb7775 483 Pfam PF00171 Aldehyde dehydrogenase family 19 476 3.7E-167 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 vm_RS06240 86d05aae1ff1ff326a55c0cea6fb7775 483 Gene3D G3DSA:3.40.605.10 12 267 6.1E-100 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 vm_RS06240 86d05aae1ff1ff326a55c0cea6fb7775 483 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 475 2.4E-206 T 11-11-2016 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 vm_RS06240 86d05aae1ff1ff326a55c0cea6fb7775 483 SUPERFAMILY SSF53720 5 479 1.44E-167 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 vm_RS08175 fbaf710976904887949ff0c5393ffe73 453 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 285 448 2.1E-39 T 11-11-2016 IPR000160 GGDEF domain vm_RS08175 fbaf710976904887949ff0c5393ffe73 453 SMART SM00267 275 451 3.0E-34 T 11-11-2016 IPR000160 GGDEF domain vm_RS08175 fbaf710976904887949ff0c5393ffe73 453 SUPERFAMILY SSF55073 293 447 2.04E-35 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS08175 fbaf710976904887949ff0c5393ffe73 453 Gene3D G3DSA:3.30.70.270 290 447 1.5E-40 T 11-11-2016 vm_RS08175 fbaf710976904887949ff0c5393ffe73 453 SMART SM01079 42 223 7.1E-20 T 11-11-2016 IPR006189 CHASE domain vm_RS08175 fbaf710976904887949ff0c5393ffe73 453 Pfam PF03924 CHASE domain 104 200 1.0E-11 T 11-11-2016 IPR006189 CHASE domain vm_RS08175 fbaf710976904887949ff0c5393ffe73 453 Pfam PF00990 Diguanylate cyclase, GGDEF domain 289 446 1.4E-37 T 11-11-2016 IPR000160 GGDEF domain vm_RS10485 4c1e5b6cda9ed92b158dd036c4ffd49a 395 SUPERFAMILY SSF48239 95 379 2.51E-15 T 11-11-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid vm_RS10485 4c1e5b6cda9ed92b158dd036c4ffd49a 395 Gene3D G3DSA:1.50.10.20 95 346 1.9E-6 T 11-11-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid vm_RS12600 c156936436f8ad536f2e4a6b70dc9c32 147 SUPERFAMILY SSF89095 1 146 2.2E-41 T 11-11-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 vm_RS12600 c156936436f8ad536f2e4a6b70dc9c32 147 Pfam PF09424 Yqey-like protein 5 146 3.5E-54 T 11-11-2016 IPR019004 Uncharacterised domain YOR215C, mitochondrial vm_RS12600 c156936436f8ad536f2e4a6b70dc9c32 147 Gene3D G3DSA:1.10.1510.10 1 90 3.6E-32 T 11-11-2016 vm_RS12600 c156936436f8ad536f2e4a6b70dc9c32 147 Gene3D G3DSA:1.10.10.410 91 147 7.8E-22 T 11-11-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal vm_RS06795 f68c1474f739c48b90d397ee21201456 458 TIGRFAM TIGR00797 matE: MATE efflux family protein 25 422 2.1E-62 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS06795 f68c1474f739c48b90d397ee21201456 458 PIRSF PIRSF006603 8 458 1.5E-65 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS06795 f68c1474f739c48b90d397ee21201456 458 Pfam PF01554 MatE 25 185 3.6E-27 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS06795 f68c1474f739c48b90d397ee21201456 458 Pfam PF01554 MatE 252 413 8.1E-17 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS14910 b0d189b7844853b2e34697d605e24b9b 484 Gene3D G3DSA:3.40.605.10 14 270 5.6E-95 T 11-11-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 vm_RS14910 b0d189b7844853b2e34697d605e24b9b 484 SUPERFAMILY SSF53720 8 482 2.09E-167 T 11-11-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 vm_RS14910 b0d189b7844853b2e34697d605e24b9b 484 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 256 263 - T 11-11-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 vm_RS14910 b0d189b7844853b2e34697d605e24b9b 484 Pfam PF00171 Aldehyde dehydrogenase family 21 479 3.3E-166 T 11-11-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 vm_RS14910 b0d189b7844853b2e34697d605e24b9b 484 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 284 295 - T 11-11-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 vm_RS14910 b0d189b7844853b2e34697d605e24b9b 484 Gene3D G3DSA:3.40.309.10 271 455 1.7E-67 T 11-11-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 vm_RS14910 b0d189b7844853b2e34697d605e24b9b 484 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 32 478 1.8E-197 T 11-11-2016 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 Reactome: R-HSA-916853 vm_RS01865 0f5a6e4cfafa6a16d5b5e386297babf5 263 SMART SM01150 3 262 6.3E-116 T 11-11-2016 IPR009770 Domain of unknown function DUF1338 vm_RS01865 0f5a6e4cfafa6a16d5b5e386297babf5 263 Pfam PF07063 Domain of unknown function (DUF1338) 30 118 8.0E-21 T 11-11-2016 IPR009770 Domain of unknown function DUF1338 vm_RS01865 0f5a6e4cfafa6a16d5b5e386297babf5 263 Pfam PF07063 Domain of unknown function (DUF1338) 136 261 9.8E-28 T 11-11-2016 IPR009770 Domain of unknown function DUF1338 vm_RS19390 a4f1f69aa4835914a36b3f93f48d365a 197 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 87 102 - T 11-11-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 vm_RS19390 a4f1f69aa4835914a36b3f93f48d365a 197 SMART SM00437 50 197 1.8E-6 T 11-11-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 vm_RS19390 a4f1f69aa4835914a36b3f93f48d365a 197 SUPERFAMILY SSF56712 6 195 5.62E-51 T 11-11-2016 IPR023405 DNA topoisomerase, type IA, core domain vm_RS19390 a4f1f69aa4835914a36b3f93f48d365a 197 Gene3D G3DSA:1.10.290.10 60 188 1.0E-37 T 11-11-2016 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 vm_RS19390 a4f1f69aa4835914a36b3f93f48d365a 197 Pfam PF01131 DNA topoisomerase 19 196 1.3E-47 T 11-11-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 vm_RS07895 68cdc92f1d138d73236f9022283a90ae 39 Pfam PF10013 Uncharacterized protein conserved in bacteria (DUF2256) 1 32 8.4E-17 T 11-11-2016 IPR017136 Uncharacterised conserved protein UCP037205 vm_RS03765 81723a2fc9e57dde273aaf33ff5c5949 208 SUPERFAMILY SSF53271 4 206 6.95E-67 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS03765 81723a2fc9e57dde273aaf33ff5c5949 208 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 1.7E-65 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS03765 81723a2fc9e57dde273aaf33ff5c5949 208 Gene3D G3DSA:3.40.50.2020 2 208 5.4E-76 T 11-11-2016 IPR029057 Phosphoribosyltransferase-like vm_RS03765 81723a2fc9e57dde273aaf33ff5c5949 208 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 208 2.1E-92 T 11-11-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 vm_RS03765 81723a2fc9e57dde273aaf33ff5c5949 208 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 44.714 T 11-11-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 vm_RS13410 0ec4facbff78316c81dc95d3d16751f3 553 Pfam PF03063 Prismane/CO dehydrogenase family 1 547 5.1E-163 T 11-11-2016 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 vm_RS13410 0ec4facbff78316c81dc95d3d16751f3 553 PIRSF PIRSF000076 1 553 1.9E-238 T 11-11-2016 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 vm_RS13410 0ec4facbff78316c81dc95d3d16751f3 553 Gene3D G3DSA:3.40.50.2030 383 550 3.9E-69 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 vm_RS13410 0ec4facbff78316c81dc95d3d16751f3 553 Gene3D G3DSA:1.20.1270.20 162 235 9.2E-25 T 11-11-2016 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 vm_RS13410 0ec4facbff78316c81dc95d3d16751f3 553 SUPERFAMILY SSF56821 1 551 4.73E-191 T 11-11-2016 IPR011254 Prismane-like GO:0003824|GO:0016491|GO:0055114 vm_RS13410 0ec4facbff78316c81dc95d3d16751f3 553 Gene3D G3DSA:1.20.1270.20 141 161 1.1E-35 T 11-11-2016 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 vm_RS13410 0ec4facbff78316c81dc95d3d16751f3 553 Gene3D G3DSA:1.20.1270.20 1 109 1.1E-35 T 11-11-2016 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 vm_RS13410 0ec4facbff78316c81dc95d3d16751f3 553 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 551 4.3E-227 T 11-11-2016 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 vm_RS13410 0ec4facbff78316c81dc95d3d16751f3 553 Gene3D G3DSA:3.40.50.2030 237 382 7.5E-67 T 11-11-2016 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 vm_RS13410 0ec4facbff78316c81dc95d3d16751f3 553 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 552 20.258 T 11-11-2016 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 vm_RS00235 431ae468ac2a92d8f3b2b8fb4f480599 183 Gene3D G3DSA:2.160.10.10 4 175 9.0E-42 T 11-11-2016 vm_RS00235 431ae468ac2a92d8f3b2b8fb4f480599 183 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 96 129 3.3E-7 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS00235 431ae468ac2a92d8f3b2b8fb4f480599 183 SUPERFAMILY SSF51161 4 175 7.21E-43 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS01385 e7e42dee4c59bb09053c9328a06b4795 144 Pfam PF07030 Protein of unknown function (DUF1320) 4 125 1.7E-32 T 11-11-2016 IPR009752 Bacteriophage Mu, Gp36 vm_RS11085 e7e42dee4c59bb09053c9328a06b4795 144 Pfam PF07030 Protein of unknown function (DUF1320) 4 125 1.7E-32 T 11-11-2016 IPR009752 Bacteriophage Mu, Gp36 vm_RS00155 5846a10639d4382abc190293383dc6cf 184 Pfam PF11355 Protein of unknown function (DUF3157) 7 183 2.7E-53 T 11-11-2016 IPR021501 Protein of unknown function DUF3157 vm_RS03650 8a511f025151523fb106cf917d9b3bac 169 PIRSF PIRSF002094 1 169 8.5E-41 T 11-11-2016 IPR005632 Chaperone protein Skp GO:0051082 vm_RS03650 8a511f025151523fb106cf917d9b3bac 169 SMART SM00935 15 169 1.0E-42 T 11-11-2016 IPR005632 Chaperone protein Skp GO:0051082 vm_RS03650 8a511f025151523fb106cf917d9b3bac 169 Gene3D G3DSA:3.30.910.20 17 68 1.3E-32 T 11-11-2016 vm_RS03650 8a511f025151523fb106cf917d9b3bac 169 Gene3D G3DSA:3.30.910.20 106 169 1.3E-32 T 11-11-2016 vm_RS03650 8a511f025151523fb106cf917d9b3bac 169 Pfam PF03938 Outer membrane protein (OmpH-like) 13 167 1.4E-25 T 11-11-2016 IPR005632 Chaperone protein Skp GO:0051082 vm_RS03650 8a511f025151523fb106cf917d9b3bac 169 SUPERFAMILY SSF111384 26 168 6.8E-32 T 11-11-2016 IPR024930 Skp domain vm_RS06010 a69e12d19892db7a6081e6b5c8effacb 212 Gene3D G3DSA:3.30.460.10 17 159 1.0E-20 T 11-11-2016 vm_RS06010 a69e12d19892db7a6081e6b5c8effacb 212 SUPERFAMILY SSF81301 2 205 4.09E-31 T 11-11-2016 vm_RS06010 a69e12d19892db7a6081e6b5c8effacb 212 Pfam PF04607 Region found in RelA / SpoT proteins 50 176 5.3E-18 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 vm_RS06010 a69e12d19892db7a6081e6b5c8effacb 212 SMART SM00954 49 179 8.1E-18 T 11-11-2016 IPR007685 RelA/SpoT GO:0015969 vm_RS08240 3de901c27bb91cbeab8212551505e7de 449 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 331 437 7.0E-17 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08240 3de901c27bb91cbeab8212551505e7de 449 SUPERFAMILY SSF51206 19 129 1.31E-15 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like vm_RS08240 3de901c27bb91cbeab8212551505e7de 449 Gene3D G3DSA:3.30.565.10 291 439 1.4E-32 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08240 3de901c27bb91cbeab8212551505e7de 449 SUPERFAMILY SSF55874 291 435 2.36E-29 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08240 3de901c27bb91cbeab8212551505e7de 449 Gene3D G3DSA:2.60.120.10 19 129 4.2E-12 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS08240 3de901c27bb91cbeab8212551505e7de 449 SMART SM00387 327 438 1.1E-23 T 11-11-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain vm_RS08240 3de901c27bb91cbeab8212551505e7de 449 Pfam PF00027 Cyclic nucleotide-binding domain 20 99 2.9E-9 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain vm_RS08240 3de901c27bb91cbeab8212551505e7de 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 394 1.8E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS08240 3de901c27bb91cbeab8212551505e7de 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 417 1.8E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS08240 3de901c27bb91cbeab8212551505e7de 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 366 380 1.8E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS08240 3de901c27bb91cbeab8212551505e7de 449 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 435 1.8E-10 T 11-11-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 SUPERFAMILY SSF53748 4 382 3.18E-143 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 3.8E-82 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 3.8E-82 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 3.8E-82 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 3.8E-82 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 3.8E-82 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 3.8E-82 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 3.8E-82 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 3.8E-82 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 3.8E-82 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 PIRSF PIRSF000724 1 387 8.4E-135 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 Pfam PF00162 Phosphoglycerate kinase 8 373 5.8E-137 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 Gene3D G3DSA:3.40.50.1270 175 371 4.5E-80 T 11-11-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 Gene3D G3DSA:3.40.50.1260 5 174 1.4E-63 T 11-11-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 6 383 38.561 T 11-11-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS12970 04d41112b121eebd5b51e452378afa8e 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 11-11-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 vm_RS00410 4355eb9032e07b48201193c1f4e144ab 544 Pfam PF03109 ABC1 family 111 230 2.2E-37 T 11-11-2016 IPR004147 UbiB domain vm_RS00410 4355eb9032e07b48201193c1f4e144ab 544 SUPERFAMILY SSF56112 94 158 6.54E-49 T 11-11-2016 IPR011009 Protein kinase-like domain vm_RS00410 4355eb9032e07b48201193c1f4e144ab 544 SUPERFAMILY SSF56112 193 436 6.54E-49 T 11-11-2016 IPR011009 Protein kinase-like domain vm_RS00410 4355eb9032e07b48201193c1f4e144ab 544 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 6 445 2.1E-179 T 11-11-2016 IPR010232 Probable protein kinase UbiB GO:0006744 vm_RS00410 4355eb9032e07b48201193c1f4e144ab 544 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 539 57.18 T 11-11-2016 IPR010232 Probable protein kinase UbiB GO:0006744 vm_RS12395 be493bf820ba69347c1325faa80b66f7 153 Pfam PF09335 SNARE associated Golgi protein 50 148 1.5E-10 T 11-11-2016 IPR032816 SNARE associated Golgi protein vm_RS02880 71eb5dfe6ea3d7be2d25678211c9be06 172 PIRSF PIRSF038996 1 171 1.3E-57 T 11-11-2016 IPR010086 Flavodoxin, long chain GO:0010181 vm_RS02880 71eb5dfe6ea3d7be2d25678211c9be06 172 ProSitePatterns PS00201 Flavodoxin signature. 5 21 - T 11-11-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 vm_RS02880 71eb5dfe6ea3d7be2d25678211c9be06 172 Pfam PF00258 Flavodoxin 5 160 1.9E-26 T 11-11-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 vm_RS02880 71eb5dfe6ea3d7be2d25678211c9be06 172 SUPERFAMILY SSF52218 1 168 3.28E-49 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS02880 71eb5dfe6ea3d7be2d25678211c9be06 172 Gene3D G3DSA:3.40.50.360 1 167 3.5E-58 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS02880 71eb5dfe6ea3d7be2d25678211c9be06 172 TIGRFAM TIGR01752 flav_long: flavodoxin 2 167 4.8E-68 T 11-11-2016 IPR010086 Flavodoxin, long chain GO:0010181 vm_RS11375 7953fb036ee67055349fc1a1c1ce8f17 422 Pfam PF13393 Histidyl-tRNA synthetase 10 312 5.4E-46 T 11-11-2016 vm_RS11375 7953fb036ee67055349fc1a1c1ce8f17 422 SUPERFAMILY SSF55681 5 321 4.78E-106 T 11-11-2016 vm_RS11375 7953fb036ee67055349fc1a1c1ce8f17 422 Gene3D G3DSA:3.40.50.800 327 419 6.5E-32 T 11-11-2016 IPR004154 Anticodon-binding vm_RS11375 7953fb036ee67055349fc1a1c1ce8f17 422 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 420 33.833 T 11-11-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 vm_RS11375 7953fb036ee67055349fc1a1c1ce8f17 422 Pfam PF03129 Anticodon binding domain 336 418 2.5E-11 T 11-11-2016 IPR004154 Anticodon-binding vm_RS11375 7953fb036ee67055349fc1a1c1ce8f17 422 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 410 7.3E-160 T 11-11-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 vm_RS11375 7953fb036ee67055349fc1a1c1ce8f17 422 PIRSF PIRSF001549 2 421 1.1E-124 T 11-11-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 vm_RS11375 7953fb036ee67055349fc1a1c1ce8f17 422 Gene3D G3DSA:3.30.930.10 4 185 4.3E-100 T 11-11-2016 vm_RS11375 7953fb036ee67055349fc1a1c1ce8f17 422 Gene3D G3DSA:3.30.930.10 221 320 4.3E-100 T 11-11-2016 vm_RS11375 7953fb036ee67055349fc1a1c1ce8f17 422 SUPERFAMILY SSF52954 327 419 4.25E-25 T 11-11-2016 IPR004154 Anticodon-binding vm_RS11750 735ed5c3b8b3f224c4ba55be12d73456 320 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 5 292 37.689 T 11-11-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 vm_RS11750 735ed5c3b8b3f224c4ba55be12d73456 320 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 6 290 2.7E-96 T 11-11-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 vm_RS11750 735ed5c3b8b3f224c4ba55be12d73456 320 Pfam PF02401 LytB protein 7 288 1.5E-91 T 11-11-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 vm_RS05505 b57a5c0f227bc19e775b82302c231e27 266 SMART SM00382 39 239 2.8E-17 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS05505 b57a5c0f227bc19e775b82302c231e27 266 SUPERFAMILY SSF52540 4 253 3.22E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05505 b57a5c0f227bc19e775b82302c231e27 266 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS05505 b57a5c0f227bc19e775b82302c231e27 266 Gene3D G3DSA:3.40.50.300 4 255 7.4E-82 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05505 b57a5c0f227bc19e775b82302c231e27 266 Pfam PF00005 ABC transporter 31 180 3.4E-35 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS06485 adc6089937bf02c6005eee785cf17ced 394 TIGRFAM TIGR02162 torC: trimethylamine-N-oxide reductase c-type cytochrome TorC 7 394 8.2E-204 T 11-11-2016 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 vm_RS06485 adc6089937bf02c6005eee785cf17ced 394 Gene3D G3DSA:1.10.3820.10 339 345 9.1E-29 T 11-11-2016 vm_RS06485 adc6089937bf02c6005eee785cf17ced 394 Gene3D G3DSA:1.10.3820.10 12 189 9.1E-29 T 11-11-2016 vm_RS06485 adc6089937bf02c6005eee785cf17ced 394 PIRSF PIRSF000014 1 394 4.5E-172 T 11-11-2016 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK GO:0005506|GO:0009055|GO:0009276|GO:0016021|GO:0020037 vm_RS06485 adc6089937bf02c6005eee785cf17ced 394 Pfam PF03264 NapC/NirT cytochrome c family, N-terminal region 16 187 1.2E-72 T 11-11-2016 IPR005126 NapC/NirT cytochrome c, N-terminal vm_RS06485 adc6089937bf02c6005eee785cf17ced 394 SUPERFAMILY SSF48695 12 187 4.86E-60 T 11-11-2016 IPR011031 Multihaem cytochrome vm_RS08670 bbce7a744ae5faf7da9216438490db2a 261 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 12 249 7.1E-34 T 11-11-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 vm_RS08670 bbce7a744ae5faf7da9216438490db2a 261 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 261 46.821 T 11-11-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 vm_RS08670 bbce7a744ae5faf7da9216438490db2a 261 Pfam PF02654 Cobalamin-5-phosphate synthase 15 249 6.0E-53 T 11-11-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 vm_RS11045 fa191226b67ad13dd9cf72db53ca49d5 519 Pfam PF06074 Protein of unknown function (DUF935) 5 516 1.2E-174 T 11-11-2016 IPR009279 Protein of unknown function DUF935 vm_RS04995 7958696415760382968832666d6b998c 95 Pfam PF07023 Protein of unknown function (DUF1315) 4 81 4.2E-29 T 11-11-2016 IPR009749 Protein of unknown function DUF1315 vm_RS14170 0857c485f81507c4010e3fadd443956b 295 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 287 3.7E-110 T 11-11-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 vm_RS14170 0857c485f81507c4010e3fadd443956b 295 Gene3D G3DSA:3.40.50.150 99 287 3.7E-45 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS14170 0857c485f81507c4010e3fadd443956b 295 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 293 1.5E-104 T 11-11-2016 vm_RS14170 0857c485f81507c4010e3fadd443956b 295 SUPERFAMILY SSF53335 43 273 1.24E-46 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS14170 0857c485f81507c4010e3fadd443956b 295 PIRSF PIRSF000401 1 295 1.2E-102 T 11-11-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 vm_RS14170 0857c485f81507c4010e3fadd443956b 295 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 293 33.879 T 11-11-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 vm_RS00925 ad65437507f79b3468f7decc9fc57d4d 403 SUPERFAMILY SSF53067 2 143 3.88E-40 T 11-11-2016 vm_RS00925 ad65437507f79b3468f7decc9fc57d4d 403 Pfam PF12693 GspL periplasmic domain 246 402 2.8E-51 T 11-11-2016 IPR025691 GspL periplasmic domain vm_RS00925 ad65437507f79b3468f7decc9fc57d4d 403 TIGRFAM TIGR01709 typeII_sec_gspL: type II secretion system protein L 5 402 1.4E-117 T 11-11-2016 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 vm_RS00925 ad65437507f79b3468f7decc9fc57d4d 403 PIRSF PIRSF015761 4 401 1.1E-36 T 11-11-2016 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 vm_RS00925 ad65437507f79b3468f7decc9fc57d4d 403 SUPERFAMILY SSF53067 146 239 9.71E-21 T 11-11-2016 vm_RS00925 ad65437507f79b3468f7decc9fc57d4d 403 Pfam PF05134 Type II secretion system (T2SS), protein L 5 241 1.1E-79 T 11-11-2016 IPR024230 GspL, cytoplasmic actin-ATPase-like domain vm_RS02065 9e39e2df7f54c6cba7a37a876bbb32f9 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 2.9E-32 T 11-11-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02065 9e39e2df7f54c6cba7a37a876bbb32f9 118 Gene3D G3DSA:1.10.8.50 2 71 3.9E-28 T 11-11-2016 vm_RS02065 9e39e2df7f54c6cba7a37a876bbb32f9 118 PIRSF PIRSF002134 1 118 2.1E-41 T 11-11-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02065 9e39e2df7f54c6cba7a37a876bbb32f9 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 25.709 T 11-11-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02065 9e39e2df7f54c6cba7a37a876bbb32f9 118 Gene3D G3DSA:4.10.910.10 72 118 3.5E-27 T 11-11-2016 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02065 9e39e2df7f54c6cba7a37a876bbb32f9 118 SUPERFAMILY SSF46946 2 114 3.68E-45 T 11-11-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 vm_RS02065 9e39e2df7f54c6cba7a37a876bbb32f9 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 11-11-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02065 9e39e2df7f54c6cba7a37a876bbb32f9 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 4.4E-53 T 11-11-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS10055 ed2e0b8ef72ecec2602d19368d77ab81 328 Pfam PF12710 haloacid dehalogenase-like hydrolase 66 267 2.1E-21 T 11-11-2016 vm_RS10055 ed2e0b8ef72ecec2602d19368d77ab81 328 SUPERFAMILY SSF56784 61 308 4.21E-28 T 11-11-2016 IPR023214 HAD-like domain vm_RS10055 ed2e0b8ef72ecec2602d19368d77ab81 328 Gene3D G3DSA:3.40.50.1000 63 79 7.5E-15 T 11-11-2016 IPR023214 HAD-like domain vm_RS10055 ed2e0b8ef72ecec2602d19368d77ab81 328 Gene3D G3DSA:3.40.50.1000 159 300 7.5E-15 T 11-11-2016 IPR023214 HAD-like domain vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 Gene3D G3DSA:3.30.70.270 514 655 8.6E-32 T 11-11-2016 vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 Gene3D G3DSA:3.40.190.10 247 360 2.5E-16 T 11-11-2016 vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 Gene3D G3DSA:3.40.190.10 44 124 6.0E-8 T 11-11-2016 vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 SUPERFAMILY SSF53850 48 226 3.8E-22 T 11-11-2016 vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 Gene3D G3DSA:3.40.190.10 125 175 1.1E-5 T 11-11-2016 vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 Gene3D G3DSA:3.40.190.10 361 426 3.6E-6 T 11-11-2016 vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 SUPERFAMILY SSF55073 517 656 7.45E-29 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 Pfam PF00990 Diguanylate cyclase, GGDEF domain 512 654 1.9E-28 T 11-11-2016 IPR000160 GGDEF domain vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 SUPERFAMILY SSF53850 250 464 1.21E-29 T 11-11-2016 vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 SMART SM00062 249 496 5.1E-11 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 SMART SM00062 29 230 2.5E-8 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 511 654 1.8E-26 T 11-11-2016 IPR000160 GGDEF domain vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 254 444 2.1E-26 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 46 182 6.1E-17 T 11-11-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF vm_RS09775 bd31140727888ceb25d5df677ad6032a 672 SMART SM00267 501 661 5.8E-24 T 11-11-2016 IPR000160 GGDEF domain vm_RS08665 43513e40e55c0483997db8e98b8d5950 179 PIRSF PIRSF006135 2 179 9.5E-57 T 11-11-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 vm_RS08665 43513e40e55c0483997db8e98b8d5950 179 SUPERFAMILY SSF52540 4 177 2.02E-54 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08665 43513e40e55c0483997db8e98b8d5950 179 Gene3D G3DSA:3.40.50.300 4 177 5.0E-63 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08665 43513e40e55c0483997db8e98b8d5950 179 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 5 176 7.9E-61 T 11-11-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269 vm_RS04425 ad2118a5962e43c898e1742a30f67bad 166 Pfam PF14539 Domain of unknown function (DUF4442) 14 151 1.1E-24 T 11-11-2016 IPR027961 Protein of unknown function DUF4442 vm_RS04425 ad2118a5962e43c898e1742a30f67bad 166 SUPERFAMILY SSF54637 11 156 7.46E-24 T 11-11-2016 IPR029069 HotDog domain vm_RS04425 ad2118a5962e43c898e1742a30f67bad 166 Gene3D G3DSA:3.10.129.10 11 157 1.2E-36 T 11-11-2016 IPR029069 HotDog domain vm_RS10490 94ead751489aacc350424714a2715028 351 Gene3D G3DSA:3.40.50.2000 174 326 6.4E-28 T 11-11-2016 vm_RS10490 94ead751489aacc350424714a2715028 351 Pfam PF00534 Glycosyl transferases group 1 174 326 3.0E-34 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 vm_RS10490 94ead751489aacc350424714a2715028 351 SUPERFAMILY SSF53756 43 350 7.85E-64 T 11-11-2016 vm_RS00990 9fce0e96d5f9cc8cf006b819afd2b1eb 124 Pfam PF09722 Protein of unknown function (DUF2384) 75 120 1.1E-4 T 11-11-2016 IPR024467 Domain of unknown function DUF2384 vm_RS02630 e7574c7f372e365ab4938f0723633054 205 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 137 188 5.3E-20 T 11-11-2016 IPR005573 Anti sigma-E protein RseA, C-terminal vm_RS02630 e7574c7f372e365ab4938f0723633054 205 SUPERFAMILY SSF89069 4 67 1.44E-20 T 11-11-2016 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 vm_RS02630 e7574c7f372e365ab4938f0723633054 205 PIRSF PIRSF016938 1 202 9.2E-36 T 11-11-2016 IPR026279 Sigma-E factor negative regulatory protein RseA GO:0006950|GO:0016989 vm_RS02630 e7574c7f372e365ab4938f0723633054 205 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 1 98 2.6E-33 T 11-11-2016 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 vm_RS09505 5378a6ad1a1722d58449e768aca02bc6 258 Pfam PF03609 PTS system sorbose-specific iic component 5 236 5.3E-72 T 11-11-2016 IPR004700 Phosphotransferase system, sorbose-specific IIC subunit GO:0009401|GO:0016021 vm_RS09375 5289a284653e257c273c6687bf2f7cbe 330 SMART SM00382 46 239 3.1E-17 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS09375 5289a284653e257c273c6687bf2f7cbe 330 Gene3D G3DSA:3.40.50.300 8 263 2.0E-80 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09375 5289a284653e257c273c6687bf2f7cbe 330 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 240 326 9.0E-27 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 vm_RS09375 5289a284653e257c273c6687bf2f7cbe 330 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 241 308 1.5E-19 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 vm_RS09375 5289a284653e257c273c6687bf2f7cbe 330 SUPERFAMILY SSF52540 9 261 2.35E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09375 5289a284653e257c273c6687bf2f7cbe 330 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS09375 5289a284653e257c273c6687bf2f7cbe 330 Pfam PF00005 ABC transporter 38 189 1.2E-33 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS11940 2eef716901c5bbe663c1c096d0cb2c61 303 PIRSF PIRSF004654 1 294 9.1E-87 T 11-11-2016 IPR023605 Lipoprotein NlpI vm_RS11940 2eef716901c5bbe663c1c096d0cb2c61 303 SMART SM00028 237 270 38.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS11940 2eef716901c5bbe663c1c096d0cb2c61 303 SMART SM00028 100 133 0.0014 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS11940 2eef716901c5bbe663c1c096d0cb2c61 303 SMART SM00028 66 99 0.68 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS11940 2eef716901c5bbe663c1c096d0cb2c61 303 SMART SM00028 134 167 330.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS11940 2eef716901c5bbe663c1c096d0cb2c61 303 Gene3D G3DSA:1.25.40.10 48 292 2.8E-25 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS11940 2eef716901c5bbe663c1c096d0cb2c61 303 SUPERFAMILY SSF48452 34 286 1.09E-65 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS07160 e9dfb686e05ca045551dcd7103377131 120 Pfam PF01042 Endoribonuclease L-PSP 33 114 1.8E-17 T 11-11-2016 IPR006175 YjgF/YER057c/UK114 family vm_RS07160 e9dfb686e05ca045551dcd7103377131 120 SUPERFAMILY SSF55298 1 116 8.17E-27 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like vm_RS07160 e9dfb686e05ca045551dcd7103377131 120 Gene3D G3DSA:3.30.1330.40 5 116 7.5E-20 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like vm_RS06020 1306215c38ca0f71f92442b4aeb29916 168 Pfam PF14015 Protein of unknown function (DUF4231) 27 103 3.1E-6 T 11-11-2016 IPR025325 Protein of unknown function DUF4231 vm_RS09495 cade72fb7c10d89a61f33702c359cb1f 145 SUPERFAMILY SSF53062 1 129 5.76E-33 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 vm_RS09495 cade72fb7c10d89a61f33702c359cb1f 145 Pfam PF03610 PTS system fructose IIA component 4 114 6.9E-28 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 vm_RS09495 cade72fb7c10d89a61f33702c359cb1f 145 Gene3D G3DSA:3.40.50.510 1 132 5.3E-37 T 11-11-2016 IPR004701 Phosphotransferase system, mannose-type IIA component GO:0009401|GO:0016021 vm_RS09555 fc1f07423027c83451d62a4512463a21 159 SUPERFAMILY SSF53927 8 142 4.61E-31 T 11-11-2016 IPR016193 Cytidine deaminase-like GO:0003824 vm_RS09555 fc1f07423027c83451d62a4512463a21 159 Gene3D G3DSA:3.40.140.10 9 139 1.6E-33 T 11-11-2016 vm_RS09555 fc1f07423027c83451d62a4512463a21 159 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 11 106 1.7E-16 T 11-11-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 vm_RS07720 6712022b5b3df2545327f1ccc257428c 495 Pfam PF02074 Carboxypeptidase Taq (M32) metallopeptidase 10 492 2.0E-92 T 11-11-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 vm_RS07720 6712022b5b3df2545327f1ccc257428c 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 444 462 6.0E-46 T 11-11-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 vm_RS07720 6712022b5b3df2545327f1ccc257428c 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 330 349 6.0E-46 T 11-11-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 vm_RS07720 6712022b5b3df2545327f1ccc257428c 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 261 280 6.0E-46 T 11-11-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 vm_RS07720 6712022b5b3df2545327f1ccc257428c 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 400 421 6.0E-46 T 11-11-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 vm_RS07720 6712022b5b3df2545327f1ccc257428c 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 241 260 6.0E-46 T 11-11-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 vm_RS07720 6712022b5b3df2545327f1ccc257428c 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 288 304 6.0E-46 T 11-11-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 vm_RS07720 6712022b5b3df2545327f1ccc257428c 495 PRINTS PR00998 Carboxypeptidase Taq (M32) metallopeptidase signature 145 165 6.0E-46 T 11-11-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 vm_RS07720 6712022b5b3df2545327f1ccc257428c 495 SUPERFAMILY SSF55486 1 493 3.79E-119 T 11-11-2016 vm_RS07720 6712022b5b3df2545327f1ccc257428c 495 PIRSF PIRSF006615 1 495 3.4E-199 T 11-11-2016 IPR001333 Peptidase M32, carboxypeptidase Taq metallopeptidase GO:0004181|GO:0006508 vm_RS07545 ef902f2dfa810e8cfdaa7c817925c1a9 327 Pfam PF10442 FIST C domain 160 306 1.8E-15 T 11-11-2016 IPR019494 FIST, C-domain vm_RS07545 ef902f2dfa810e8cfdaa7c817925c1a9 327 SMART SM00897 9 159 1.6E-11 T 11-11-2016 IPR013702 FIST domain, N-terminal vm_RS07545 ef902f2dfa810e8cfdaa7c817925c1a9 327 SMART SM01204 160 307 1.7E-26 T 11-11-2016 IPR019494 FIST, C-domain vm_RS07545 ef902f2dfa810e8cfdaa7c817925c1a9 327 Pfam PF08495 FIST N domain 33 158 5.8E-18 T 11-11-2016 IPR013702 FIST domain, N-terminal vm_RS01445 97cc5f8943aa552529ae06bfcaa2a64b 355 Pfam PF04865 Baseplate J-like protein 66 319 2.8E-55 T 11-11-2016 IPR006949 Baseplate protein J-like vm_RS11145 97cc5f8943aa552529ae06bfcaa2a64b 355 Pfam PF04865 Baseplate J-like protein 66 319 2.8E-55 T 11-11-2016 IPR006949 Baseplate protein J-like vm_RS05855 3cd22e08fd674eb53e4dbf06352a574e 35 TIGRFAM TIGR02106 cyd_oper_ybgT: cyd operon protein YbgT 1 30 1.1E-20 T 11-11-2016 IPR011724 Cyd operon protein YbgT MetaCyc: PWY-7545 vm_RS05855 3cd22e08fd674eb53e4dbf06352a574e 35 Pfam PF08173 Membrane bound YbgT-like protein 1 27 1.2E-17 T 11-11-2016 IPR012994 Membrane bound YbgT-like vm_RS13265 6cc256487157b7e0e54e7076d95b8b66 145 Pfam PF00582 Universal stress protein family 1 142 1.3E-33 T 11-11-2016 IPR006016 UspA GO:0006950 vm_RS13265 6cc256487157b7e0e54e7076d95b8b66 145 Gene3D G3DSA:3.40.50.620 1 144 2.9E-38 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS13265 6cc256487157b7e0e54e7076d95b8b66 145 PIRSF PIRSF006276 1 145 4.5E-20 T 11-11-2016 IPR006015 Universal stress protein A vm_RS13265 6cc256487157b7e0e54e7076d95b8b66 145 PRINTS PR01438 Universal stress protein signature 120 142 7.4E-12 T 11-11-2016 IPR006015 Universal stress protein A vm_RS13265 6cc256487157b7e0e54e7076d95b8b66 145 PRINTS PR01438 Universal stress protein signature 102 114 7.4E-12 T 11-11-2016 IPR006015 Universal stress protein A vm_RS13265 6cc256487157b7e0e54e7076d95b8b66 145 PRINTS PR01438 Universal stress protein signature 2 20 7.4E-12 T 11-11-2016 IPR006015 Universal stress protein A vm_RS13265 6cc256487157b7e0e54e7076d95b8b66 145 SUPERFAMILY SSF52402 2 143 3.1E-36 T 11-11-2016 vm_RS05215 748d381f89a4248a11ef2cd687638606 431 PIRSF PIRSF028704 1 384 1.4E-114 T 11-11-2016 IPR014550 Uncharacterised conserved protein UCP028704, OpgC vm_RS05215 748d381f89a4248a11ef2cd687638606 431 Pfam PF10129 OpgC protein 3 361 2.1E-83 T 11-11-2016 IPR014550 Uncharacterised conserved protein UCP028704, OpgC vm_RS09350 8089eb4b2324033cee2424cafe6de293 136 Gene3D G3DSA:1.10.720.30 19 77 2.4E-28 T 11-11-2016 IPR003034 SAP domain vm_RS09350 8089eb4b2324033cee2424cafe6de293 136 Pfam PF09905 Uncharacterized conserved protein (DUF2132) 11 73 2.3E-30 T 11-11-2016 IPR018668 DNA-binding protein VF530-like, bacteria GO:0003677 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 15 283 1.4E-126 T 11-11-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 Gene3D G3DSA:1.10.601.10 13 122 2.6E-34 T 11-11-2016 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 SUPERFAMILY SSF88659 198 283 2.24E-19 T 11-11-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 SUPERFAMILY SSF88946 11 122 6.02E-40 T 11-11-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 77 90 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 Pfam PF04542 Sigma-70 region 2 53 122 5.6E-17 T 11-11-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 285 53.917 T 11-11-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 48 282 2.6E-34 T 11-11-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 Pfam PF00140 Sigma-70 factor, region 1.2 14 40 6.6E-8 T 11-11-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 PRINTS PR00046 Major sigma-70 factor signature 268 279 7.9E-19 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 PRINTS PR00046 Major sigma-70 factor signature 253 268 7.9E-19 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 PRINTS PR00046 Major sigma-70 factor signature 233 245 7.9E-19 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 PRINTS PR00046 Major sigma-70 factor signature 77 90 7.9E-19 T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 Gene3D G3DSA:1.10.10.10 224 282 2.3E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 Pfam PF04545 Sigma-70, region 4 229 281 8.2E-16 T 11-11-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS00695 71486ff6c53b0b1f1a28f81e59e198de 286 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 253 279 - T 11-11-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 vm_RS01480 b09417e56d0810dae68da58049170fa9 435 Pfam PF03605 Anaerobic c4-dicarboxylate membrane transporter 5 367 1.2E-143 T 11-11-2016 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 vm_RS01480 b09417e56d0810dae68da58049170fa9 435 PIRSF PIRSF004539 1 435 1.2E-178 T 11-11-2016 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 vm_RS01480 b09417e56d0810dae68da58049170fa9 435 TIGRFAM TIGR00770 Dcu: transporter, anaerobic C4-dicarboxylate uptake (Dcu) family 5 434 6.1E-179 T 11-11-2016 IPR004668 Anaerobic c4-dicarboxylate membrane transporter GO:0015556|GO:0015740|GO:0016021 vm_RS00415 e26665ac44ac89c104ce62239f4681b5 82 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 80 24.286 T 11-11-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 vm_RS00415 e26665ac44ac89c104ce62239f4681b5 82 Pfam PF02416 mttA/Hcf106 family 4 55 4.7E-15 T 11-11-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 vm_RS00415 e26665ac44ac89c104ce62239f4681b5 82 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 48 1.9E-22 T 11-11-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 vm_RS06925 1e1f30a707f4221678df06b76fba20f2 472 Pfam PF02321 Outer membrane efflux protein 26 243 4.8E-22 T 11-11-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 vm_RS06925 1e1f30a707f4221678df06b76fba20f2 472 Pfam PF02321 Outer membrane efflux protein 264 445 5.5E-24 T 11-11-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 vm_RS06925 1e1f30a707f4221678df06b76fba20f2 472 SUPERFAMILY SSF56954 106 446 7.46E-68 T 11-11-2016 vm_RS06925 1e1f30a707f4221678df06b76fba20f2 472 SUPERFAMILY SSF56954 2 77 7.46E-68 T 11-11-2016 vm_RS06925 1e1f30a707f4221678df06b76fba20f2 472 Gene3D G3DSA:1.20.1600.10 22 444 1.3E-51 T 11-11-2016 vm_RS09870 bba6ae7aa4a4935af8a567ca7cc6a6e9 182 Gene3D G3DSA:3.40.109.10 1 181 5.1E-42 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 vm_RS09870 bba6ae7aa4a4935af8a567ca7cc6a6e9 182 Pfam PF00881 Nitroreductase family 8 161 3.3E-24 T 11-11-2016 IPR029479 Nitroreductase Reactome: R-HSA-209968 vm_RS09870 bba6ae7aa4a4935af8a567ca7cc6a6e9 182 PIRSF PIRSF000232 1 182 4.7E-62 T 11-11-2016 IPR026021 Putative NAD(P)H nitroreductase YdjA-like vm_RS09870 bba6ae7aa4a4935af8a567ca7cc6a6e9 182 SUPERFAMILY SSF55469 1 181 1.57E-41 T 11-11-2016 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 vm_RS14445 a34a0d70a57b536eb71fcc7c5b89c763 345 Gene3D G3DSA:3.40.50.2000 170 342 2.7E-25 T 11-11-2016 vm_RS14445 a34a0d70a57b536eb71fcc7c5b89c763 345 SUPERFAMILY SSF53756 2 341 1.7E-71 T 11-11-2016 vm_RS14445 a34a0d70a57b536eb71fcc7c5b89c763 345 Gene3D G3DSA:3.40.50.2000 2 142 1.9E-37 T 11-11-2016 vm_RS14445 a34a0d70a57b536eb71fcc7c5b89c763 345 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 70 310 4.0E-21 T 11-11-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 vm_RS07270 55b71520d31534fffc5f4383694b5934 673 Gene3D G3DSA:1.10.287.950 425 642 9.8E-48 T 11-11-2016 vm_RS07270 55b71520d31534fffc5f4383694b5934 673 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 477 667 3.2E-38 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS07270 55b71520d31534fffc5f4383694b5934 673 SUPERFAMILY SSF58104 368 671 3.4E-57 T 11-11-2016 vm_RS07270 55b71520d31534fffc5f4383694b5934 673 SMART SM00283 410 671 1.3E-40 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS14365 c9be3149d5ec111fe510ad334e3d952f 346 SUPERFAMILY SSF160355 68 311 3.66E-20 T 11-11-2016 vm_RS14365 c9be3149d5ec111fe510ad334e3d952f 346 Pfam PF02706 Chain length determinant protein 33 111 6.6E-6 T 11-11-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 vm_RS14365 c9be3149d5ec111fe510ad334e3d952f 346 Gene3D G3DSA:3.30.1890.10 65 314 5.5E-23 T 11-11-2016 vm_RS07390 21b9072af8bcac64e5d99f45d8280993 406 Gene3D G3DSA:1.10.3430.10 15 384 7.8E-96 T 11-11-2016 IPR029020 Ammonium/urea transporter vm_RS07390 21b9072af8bcac64e5d99f45d8280993 406 ProSitePatterns PS01219 Ammonium transporters signature. 167 192 - T 11-11-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 vm_RS07390 21b9072af8bcac64e5d99f45d8280993 406 SUPERFAMILY SSF111352 17 384 4.97E-97 T 11-11-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 vm_RS07390 21b9072af8bcac64e5d99f45d8280993 406 Pfam PF00909 Ammonium Transporter Family 23 401 1.9E-91 T 11-11-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 vm_RS04650 e2ea5b3dd7787f28cb021fc0fdad8a08 208 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 2 203 3.1E-79 T 11-11-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 vm_RS04650 e2ea5b3dd7787f28cb021fc0fdad8a08 208 Gene3D G3DSA:3.40.50.300 2 193 1.5E-39 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04650 e2ea5b3dd7787f28cb021fc0fdad8a08 208 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS04650 e2ea5b3dd7787f28cb021fc0fdad8a08 208 Pfam PF00005 ABC transporter 18 158 4.2E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS04650 e2ea5b3dd7787f28cb021fc0fdad8a08 208 SUPERFAMILY SSF52540 2 194 5.33E-41 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04650 e2ea5b3dd7787f28cb021fc0fdad8a08 208 SMART SM00382 26 208 3.9E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS05080 7310b16901137fa695fbc2b5931ec63e 194 Pfam PF13023 HD domain 11 167 2.6E-15 T 11-11-2016 IPR006674 HD domain vm_RS05080 7310b16901137fa695fbc2b5931ec63e 194 SUPERFAMILY SSF109604 4 184 1.48E-42 T 11-11-2016 vm_RS05080 7310b16901137fa695fbc2b5931ec63e 194 Hamap MF_01100 5'-deoxynucleotidase YfbR [yfbR]. 3 194 46.454 T 11-11-2016 IPR022971 5'-deoxynucleotidase YfbR KEGG: 00240+3.1.3.89 vm_RS05080 7310b16901137fa695fbc2b5931ec63e 194 Gene3D G3DSA:1.10.3210.10 3 193 1.9E-44 T 11-11-2016 IPR006674 HD domain vm_RS05080 7310b16901137fa695fbc2b5931ec63e 194 SMART SM00471 26 151 1.8E-8 T 11-11-2016 IPR003607 HD/PDEase domain vm_RS05080 7310b16901137fa695fbc2b5931ec63e 194 ProDom PD353566 UPF0207 HYDROLASE HD PHOSPHOHYDROLASE METAL-DEPENDENT SUBDOMAIN YFBR PHOSPHOHYDROLASE NUCLEOTIDE-BINDING NUCLEOSIDE 80 184 1.0E-44 T 11-11-2016 vm_RS11200 51ea2acf8e600494c13807935bed8157 538 Pfam PF01593 Flavin containing amine oxidoreductase 214 268 2.3E-4 T 11-11-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 vm_RS11200 51ea2acf8e600494c13807935bed8157 538 Gene3D G3DSA:3.50.50.60 100 288 3.9E-34 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS11200 51ea2acf8e600494c13807935bed8157 538 Gene3D G3DSA:3.50.50.60 473 530 3.9E-34 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS11200 51ea2acf8e600494c13807935bed8157 538 SUPERFAMILY SSF51905 100 286 1.4E-35 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS11200 51ea2acf8e600494c13807935bed8157 538 SUPERFAMILY SSF51905 479 529 1.4E-35 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS11200 51ea2acf8e600494c13807935bed8157 538 PIRSF PIRSF038984 1 534 4.7E-239 T 11-11-2016 IPR028348 FAD dependent protein vm_RS07940 4dd17780d13dd6d49e1ee809b37a2824 152 SUPERFAMILY SSF158682 1 146 2.75E-28 T 11-11-2016 IPR029024 TerB-like vm_RS07940 4dd17780d13dd6d49e1ee809b37a2824 152 Gene3D G3DSA:1.10.3680.10 1 147 1.5E-24 T 11-11-2016 IPR029024 TerB-like vm_RS07940 4dd17780d13dd6d49e1ee809b37a2824 152 Pfam PF05099 Tellurite resistance protein TerB 5 142 1.1E-38 T 11-11-2016 IPR007791 Co-chaperone DjlA, N-terminal vm_RS03880 6678886a32383247175faf974f673ad7 235 Pfam PF03963 Flagellar hook capping protein - N-terminal region 22 85 2.2E-21 T 11-11-2016 IPR005648 Flagellar hook capping protein vm_RS03880 6678886a32383247175faf974f673ad7 235 Pfam PF13861 FlgD Tudor-like domain 93 229 1.2E-14 T 11-11-2016 IPR025963 FlgD Tudor-like domain vm_RS03880 6678886a32383247175faf974f673ad7 235 Pfam PF13860 FlgD Ig-like domain 118 184 3.1E-20 T 11-11-2016 IPR025965 FlgD Ig-like domain vm_RS06465 e29564974c5ff8de629d8a651434b935 77 TIGRFAM TIGR02647 DNA: TIGR02647 family protein 1 77 7.9E-39 T 11-11-2016 IPR013468 Conserved hypothetical protein CHP02647 vm_RS06465 e29564974c5ff8de629d8a651434b935 77 Pfam PF06146 Phosphate-starvation-inducible E 8 68 8.4E-11 T 11-11-2016 IPR020948 Phosphate-starvation-induced PsiE-like vm_RS00160 2adeddf30b38fd31cd8c09dea73fdd74 481 Pfam PF02386 Cation transport protein 53 475 1.9E-48 T 11-11-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 vm_RS00160 2adeddf30b38fd31cd8c09dea73fdd74 481 PIRSF PIRSF006247 1 481 2.4E-167 T 11-11-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 vm_RS00160 2adeddf30b38fd31cd8c09dea73fdd74 481 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 85 464 3.7E-108 T 11-11-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 vm_RS05165 4caddce292081fcf6396aed145dcff1d 270 PIRSF PIRSF003092 1 270 1.2E-94 T 11-11-2016 IPR025501 ATP binding protein MinD vm_RS05165 4caddce292081fcf6396aed145dcff1d 270 SUPERFAMILY SSF52540 1 268 2.84E-53 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05165 4caddce292081fcf6396aed145dcff1d 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 3 268 1.8E-110 T 11-11-2016 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 vm_RS05165 4caddce292081fcf6396aed145dcff1d 270 Gene3D G3DSA:3.40.50.300 1 248 6.1E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05165 4caddce292081fcf6396aed145dcff1d 270 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 217 3.3E-26 T 11-11-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain vm_RS05450 efdf15c52d6bd547719e6409d8b452d4 228 Gene3D G3DSA:3.40.50.300 22 186 1.9E-11 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05450 efdf15c52d6bd547719e6409d8b452d4 228 SUPERFAMILY SSF52540 22 199 1.95E-14 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05450 efdf15c52d6bd547719e6409d8b452d4 228 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 25 207 4.5E-6 T 11-11-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain vm_RS10265 0967c03e3bf0235d5995d960765a9104 272 Pfam PF09829 Uncharacterized protein conserved in bacteria (DUF2057) 179 227 9.7E-5 T 11-11-2016 IPR018635 Uncharacterised protein family UPF0319 vm_RS10990 92ff004818b787a37aa4d09cf0ddac7f 181 Pfam PF06252 Protein of unknown function (DUF1018) 17 141 6.2E-31 T 11-11-2016 IPR009363 Bacteriophage Mu, Gp16 vm_RS01280 92ff004818b787a37aa4d09cf0ddac7f 181 Pfam PF06252 Protein of unknown function (DUF1018) 17 141 6.2E-31 T 11-11-2016 IPR009363 Bacteriophage Mu, Gp16 vm_RS06355 58e8b1a51ad2aedfa836e00f101cb8f8 278 Pfam PF02698 DUF218 domain 80 242 3.5E-29 T 11-11-2016 IPR003848 Domain of unknown function DUF218 vm_RS06355 58e8b1a51ad2aedfa836e00f101cb8f8 278 Gene3D G3DSA:3.40.50.620 79 210 2.6E-16 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS04085 394ff3b610108264b945fa560514bce8 373 Pfam PF09839 Uncharacterized protein conserved in bacteria (DUF2066) 18 249 2.6E-68 T 11-11-2016 IPR018642 Protein of unknown function DUF2066 vm_RS05370 66e319c1a72b6160674f73ab99e55178 231 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 57 70 - T 11-11-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS05370 66e319c1a72b6160674f73ab99e55178 231 SUPERFAMILY SSF51366 2 227 7.54E-77 T 11-11-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 vm_RS05370 66e319c1a72b6160674f73ab99e55178 231 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 5 222 1.0E-54 T 11-11-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS05370 66e319c1a72b6160674f73ab99e55178 231 SMART SM00934 5 226 2.3E-101 T 11-11-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS05370 66e319c1a72b6160674f73ab99e55178 231 Gene3D G3DSA:3.20.20.70 3 228 1.1E-90 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS05370 66e319c1a72b6160674f73ab99e55178 231 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 3 231 40.002 T 11-11-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS05370 66e319c1a72b6160674f73ab99e55178 231 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 6 226 4.0E-57 T 11-11-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|Reactome: R-HSA-500753 vm_RS12690 7020d4c9ff3b189cb25dd5552ca2604c 155 SUPERFAMILY SSF102712 51 125 7.32E-6 T 11-11-2016 vm_RS12690 7020d4c9ff3b189cb25dd5552ca2604c 155 Gene3D G3DSA:3.40.140.10 34 155 9.4E-50 T 11-11-2016 vm_RS12690 7020d4c9ff3b189cb25dd5552ca2604c 155 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 105 110 - T 11-11-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site vm_RS12690 7020d4c9ff3b189cb25dd5552ca2604c 155 Pfam PF04002 RadC-like JAB domain 37 154 1.8E-45 T 11-11-2016 IPR025657 RadC-like JAB domain vm_RS12690 7020d4c9ff3b189cb25dd5552ca2604c 155 TIGRFAM TIGR00608 radc: DNA repair protein RadC 26 155 1.5E-46 T 11-11-2016 IPR001405 RadC protein vm_RS14440 6daf77fde8938f025ed22407fd936746 259 Pfam PF00535 Glycosyl transferase family 2 8 128 4.3E-15 T 11-11-2016 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 vm_RS14440 6daf77fde8938f025ed22407fd936746 259 SUPERFAMILY SSF53448 3 145 3.06E-24 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS14440 6daf77fde8938f025ed22407fd936746 259 Gene3D G3DSA:3.90.550.10 2 119 2.2E-12 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS06625 c47a8d4c02c02dcbbb3f09d5f057dea4 147 Pfam PF03724 META domain 33 137 6.4E-28 T 11-11-2016 IPR005184 Domain of unknown function DUF306, Meta/HslJ vm_RS11070 3aae735bf8c63226b7372ae2f67653af 318 Pfam PF10123 Mu-like prophage I protein 26 309 7.1E-56 T 11-11-2016 IPR012106 Protease, Mu phage/prophage I type vm_RS06205 ac033ea246ab257dc52ce766bcf82be1 453 TIGRFAM TIGR00771 DcuC: transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family 56 443 4.0E-99 T 11-11-2016 IPR004669 C4-dicarboxylate anaerobic carrier GO:0015556|GO:0015740|GO:0016021 vm_RS06205 ac033ea246ab257dc52ce766bcf82be1 453 Pfam PF03606 C4-dicarboxylate anaerobic carrier 5 448 4.6E-81 T 11-11-2016 IPR018385 C4-dicarboxylate anaerobic carrier-like GO:0016021 vm_RS01605 95c14bd0b1f5ef3920fe94f4e477ea5c 463 PIRSF PIRSF006603 9 460 7.1E-127 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS01605 95c14bd0b1f5ef3920fe94f4e477ea5c 463 Pfam PF01554 MatE 34 192 8.6E-26 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS01605 95c14bd0b1f5ef3920fe94f4e477ea5c 463 Pfam PF01554 MatE 257 418 1.3E-19 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS01605 95c14bd0b1f5ef3920fe94f4e477ea5c 463 TIGRFAM TIGR00797 matE: MATE efflux family protein 34 425 6.2E-58 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS14470 2ebcb25dc395f35c8cdb08c6ae7775a0 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 21.185 T 11-11-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS14470 2ebcb25dc395f35c8cdb08c6ae7775a0 78 SUPERFAMILY SSF143800 2 76 6.47E-30 T 11-11-2016 vm_RS14470 2ebcb25dc395f35c8cdb08c6ae7775a0 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 3.3E-27 T 11-11-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS14470 2ebcb25dc395f35c8cdb08c6ae7775a0 78 Gene3D G3DSA:2.30.170.40 2 77 1.2E-35 T 11-11-2016 vm_RS14470 2ebcb25dc395f35c8cdb08c6ae7775a0 78 Pfam PF00830 Ribosomal L28 family 3 62 6.7E-26 T 11-11-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS08600 33220dcd4053234b006f1484ce6c3305 377 Pfam PF00268 Ribonucleotide reductase, small chain 32 333 4.6E-49 T 11-11-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS08600 33220dcd4053234b006f1484ce6c3305 377 SUPERFAMILY SSF47240 3 341 6.55E-112 T 11-11-2016 IPR009078 Ferritin-like superfamily vm_RS08600 33220dcd4053234b006f1484ce6c3305 377 Gene3D G3DSA:1.10.620.20 3 341 5.0E-124 T 11-11-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: R-HSA-499943 vm_RS08600 33220dcd4053234b006f1484ce6c3305 377 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 115 131 - T 11-11-2016 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 vm_RS02190 314c67ca0ba510dc8b83f6631d4af699 571 Gene3D G3DSA:2.40.160.50 279 568 8.4E-22 T 11-11-2016 vm_RS02190 314c67ca0ba510dc8b83f6631d4af699 571 Pfam PF01103 Surface antigen 274 568 2.8E-28 T 11-11-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020 vm_RS07280 482894eb07beace48791dc110d54f517 245 SMART SM01144 27 221 3.1E-65 T 11-11-2016 IPR005636 DTW vm_RS07280 482894eb07beace48791dc110d54f517 245 Pfam PF03942 DTW domain 29 215 2.2E-42 T 11-11-2016 IPR005636 DTW vm_RS02255 81ea9eec052f4599823c44f3cd2ee058 189 Pfam PF04751 Protein of unknown function (DUF615) 18 168 2.5E-55 T 11-11-2016 IPR006839 Ribosome-associated, YjgA vm_RS02255 81ea9eec052f4599823c44f3cd2ee058 189 PIRSF PIRSF016183 1 176 9.1E-72 T 11-11-2016 IPR006839 Ribosome-associated, YjgA vm_RS02255 81ea9eec052f4599823c44f3cd2ee058 189 Gene3D G3DSA:1.10.60.30 104 175 2.8E-28 T 11-11-2016 IPR023153 PSPTO4464-like domain vm_RS02255 81ea9eec052f4599823c44f3cd2ee058 189 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 8 172 23.401 T 11-11-2016 IPR006839 Ribosome-associated, YjgA vm_RS02255 81ea9eec052f4599823c44f3cd2ee058 189 SUPERFAMILY SSF158710 28 171 1.31E-51 T 11-11-2016 vm_RS02255 81ea9eec052f4599823c44f3cd2ee058 189 Gene3D G3DSA:1.10.60.30 28 102 2.7E-34 T 11-11-2016 IPR023153 PSPTO4464-like domain vm_RS04815 239701472adb3bd1e664e3da31eb1a9d 1031 Pfam PF10150 Ribonuclease E/G family 118 387 2.8E-94 T 11-11-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 vm_RS04815 239701472adb3bd1e664e3da31eb1a9d 1031 SMART SM00316 34 116 3.9E-11 T 11-11-2016 IPR022967 RNA-binding domain, S1 vm_RS04815 239701472adb3bd1e664e3da31eb1a9d 1031 SUPERFAMILY SSF50249 37 121 9.43E-20 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS04815 239701472adb3bd1e664e3da31eb1a9d 1031 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 10 421 7.8E-171 T 11-11-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 vm_RS04815 239701472adb3bd1e664e3da31eb1a9d 1031 Gene3D G3DSA:2.40.50.140 28 121 5.2E-34 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS04815 239701472adb3bd1e664e3da31eb1a9d 1031 Pfam PF00575 S1 RNA binding domain 34 115 4.4E-14 T 11-11-2016 IPR003029 S1 domain GO:0003676 vm_RS04815 239701472adb3bd1e664e3da31eb1a9d 1031 Hamap MF_00970 Ribonuclease E [rne]. 1 1018 35.613 T 11-11-2016 IPR028878 Ribonuclease E GO:0006396|GO:0008995 vm_RS00995 a356714e0674463b2e74400d0748bdc2 135 Gene3D G3DSA:2.10.109.10 14 126 4.5E-33 T 11-11-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain vm_RS00995 a356714e0674463b2e74400d0748bdc2 135 SUPERFAMILY SSF51306 3 124 1.22E-23 T 11-11-2016 IPR015927 Peptidase S24/S26A/S26B/S26C vm_RS00995 a356714e0674463b2e74400d0748bdc2 135 Pfam PF00717 Peptidase S24-like 47 107 9.7E-9 T 11-11-2016 IPR019759 Peptidase S24/S26A/S26B vm_RS06640 c8340b43f40e8226a7545a7b1d36b328 365 PRINTS PR00164 ABC-2 type transport system membrane protein signature 250 274 9.0E-7 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 vm_RS06640 c8340b43f40e8226a7545a7b1d36b328 365 PRINTS PR00164 ABC-2 type transport system membrane protein signature 307 326 9.0E-7 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 vm_RS06640 c8340b43f40e8226a7545a7b1d36b328 365 PRINTS PR00164 ABC-2 type transport system membrane protein signature 287 306 9.0E-7 T 11-11-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 vm_RS06640 c8340b43f40e8226a7545a7b1d36b328 365 Pfam PF12698 ABC-2 family transporter protein 24 356 4.6E-46 T 11-11-2016 vm_RS10035 8eaaf608b7d5394acc378deda3bf61b5 162 Pfam PF14316 Domain of unknown function (DUF4381) 13 154 8.2E-21 T 11-11-2016 IPR025489 Protein of unknown function (DUF4381 vm_RS12560 51a7cdd21adaaa595c31e3e53a0aa747 267 Pfam PF02673 Bacitracin resistance protein BacA 7 258 2.2E-74 T 11-11-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 vm_RS12560 51a7cdd21adaaa595c31e3e53a0aa747 267 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 7 257 3.5E-74 T 11-11-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 vm_RS12560 51a7cdd21adaaa595c31e3e53a0aa747 267 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 264 17.46 T 11-11-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 vm_RS04805 2810530431184b1ce2fa979ca586979e 291 SUPERFAMILY SSF103481 38 143 1.31E-7 T 11-11-2016 vm_RS04805 2810530431184b1ce2fa979ca586979e 291 SUPERFAMILY SSF103481 194 290 1.11E-7 T 11-11-2016 vm_RS07265 6bfcc5bd04fd39f729587265f490c163 166 Pfam PF00877 NlpC/P60 family 53 157 2.9E-30 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain vm_RS07265 6bfcc5bd04fd39f729587265f490c163 166 Gene3D G3DSA:3.90.1720.10 49 158 2.2E-39 T 11-11-2016 IPR000064 Endopeptidase, NLPC/P60 domain vm_RS07265 6bfcc5bd04fd39f729587265f490c163 166 SUPERFAMILY SSF54001 42 158 2.99E-39 T 11-11-2016 vm_RS05500 f9a76289f1e4703eb95bf839b431325d 288 SUPERFAMILY SSF52540 6 257 3.94E-68 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05500 f9a76289f1e4703eb95bf839b431325d 288 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS05500 f9a76289f1e4703eb95bf839b431325d 288 Gene3D G3DSA:3.40.50.300 5 259 2.4E-76 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05500 f9a76289f1e4703eb95bf839b431325d 288 SMART SM00382 35 244 4.7E-17 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS05500 f9a76289f1e4703eb95bf839b431325d 288 Pfam PF00005 ABC transporter 26 186 1.8E-29 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS11720 a79d8c2268867997b3f056d5f7bea104 330 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 12 283 1.1E-81 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 vm_RS11720 a79d8c2268867997b3f056d5f7bea104 330 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 3 326 46.37 T 11-11-2016 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902 vm_RS11720 a79d8c2268867997b3f056d5f7bea104 330 SUPERFAMILY SSF51445 2 286 2.63E-87 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS11720 a79d8c2268867997b3f056d5f7bea104 330 Gene3D G3DSA:3.20.20.300 3 284 4.4E-91 T 11-11-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 vm_RS11720 a79d8c2268867997b3f056d5f7bea104 330 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 228 245 - T 11-11-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 vm_RS11900 d9a4b3b7bd7bfe35d4265a969aa32eed 167 Gene3D G3DSA:3.40.630.30 1 128 1.2E-21 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS11900 d9a4b3b7bd7bfe35d4265a969aa32eed 167 Pfam PF13527 Acetyltransferase (GNAT) domain 3 123 9.4E-11 T 11-11-2016 vm_RS11900 d9a4b3b7bd7bfe35d4265a969aa32eed 167 SUPERFAMILY SSF55729 1 132 5.66E-28 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS17815 d13ddf6eb350d31ae31723e250623154 331 Pfam PF02875 Mur ligase family, glutamate ligase domain 178 266 6.4E-22 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS17815 d13ddf6eb350d31ae31723e250623154 331 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 1 322 9.8E-124 T 11-11-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387 vm_RS17815 d13ddf6eb350d31ae31723e250623154 331 Pfam PF08245 Mur ligase middle domain 28 156 6.1E-22 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS17815 d13ddf6eb350d31ae31723e250623154 331 SUPERFAMILY SSF53623 1 172 4.06E-51 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS17815 d13ddf6eb350d31ae31723e250623154 331 Gene3D G3DSA:3.90.190.20 178 324 1.5E-57 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS17815 d13ddf6eb350d31ae31723e250623154 331 SUPERFAMILY SSF53244 175 323 3.11E-48 T 11-11-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 vm_RS17815 d13ddf6eb350d31ae31723e250623154 331 Gene3D G3DSA:3.40.1190.10 1 177 3.1E-59 T 11-11-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Reactome: R-HSA-196757 vm_RS05250 98eb1e6baaa5ae7552549b8d59885aac 230 Pfam PF01066 CDP-alcohol phosphatidyltransferase 34 105 7.1E-9 T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 vm_RS04725 551f048c88203c83696ec8bf71d1009a 306 Pfam PF00850 Histone deacetylase domain 29 288 4.3E-48 T 11-11-2016 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 vm_RS04725 551f048c88203c83696ec8bf71d1009a 306 SUPERFAMILY SSF52768 3 290 5.76E-78 T 11-11-2016 vm_RS04725 551f048c88203c83696ec8bf71d1009a 306 PRINTS PR01270 Histone deacetylase superfamily signature 122 145 2.0E-16 T 11-11-2016 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 vm_RS04725 551f048c88203c83696ec8bf71d1009a 306 PRINTS PR01270 Histone deacetylase superfamily signature 156 171 2.0E-16 T 11-11-2016 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 vm_RS04725 551f048c88203c83696ec8bf71d1009a 306 PRINTS PR01270 Histone deacetylase superfamily signature 230 240 2.0E-16 T 11-11-2016 IPR000286 Histone deacetylase superfamily Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 vm_RS04725 551f048c88203c83696ec8bf71d1009a 306 Gene3D G3DSA:3.40.800.20 2 291 1.9E-62 T 11-11-2016 IPR023801 Histone deacetylase domain Reactome: R-HSA-2122947|Reactome: R-HSA-2644606|Reactome: R-HSA-2894862 vm_RS08335 82083a8bdcd4ce777c0f12bcd572484c 543 SMART SM00283 271 532 2.0E-50 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS08335 82083a8bdcd4ce777c0f12bcd572484c 543 Gene3D G3DSA:1.10.287.950 286 502 1.4E-47 T 11-11-2016 vm_RS08335 82083a8bdcd4ce777c0f12bcd572484c 543 SUPERFAMILY SSF58104 224 534 6.93E-62 T 11-11-2016 vm_RS08335 82083a8bdcd4ce777c0f12bcd572484c 543 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 531 2.1E-43 T 11-11-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 vm_RS08335 82083a8bdcd4ce777c0f12bcd572484c 543 SMART SM00304 203 256 0.0019 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08335 82083a8bdcd4ce777c0f12bcd572484c 543 SMART SM00304 473 529 89.0 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS08335 82083a8bdcd4ce777c0f12bcd572484c 543 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 398 427 5.0E-8 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS08335 82083a8bdcd4ce777c0f12bcd572484c 543 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 299 328 5.0E-8 T 11-11-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 vm_RS08335 82083a8bdcd4ce777c0f12bcd572484c 543 Pfam PF00672 HAMP domain 184 251 2.0E-7 T 11-11-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 vm_RS13100 b0cf75ff9fe2c07c96e07484672ba328 239 Pfam PF02390 Putative methyltransferase 63 232 7.9E-59 T 11-11-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 vm_RS13100 b0cf75ff9fe2c07c96e07484672ba328 239 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 47 238 5.1E-68 T 11-11-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 vm_RS13100 b0cf75ff9fe2c07c96e07484672ba328 239 Gene3D G3DSA:3.40.50.150 59 197 1.2E-13 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS13100 b0cf75ff9fe2c07c96e07484672ba328 239 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 23 238 30.136 T 11-11-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 vm_RS13100 b0cf75ff9fe2c07c96e07484672ba328 239 SUPERFAMILY SSF53335 15 236 1.72E-35 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS06860 964311981134e19264b197aceeeadda8 182 Pfam PF07209 Protein of unknown function (DUF1415) 6 172 3.4E-66 T 11-11-2016 IPR009858 Protein of unknown function DUF1415 vm_RS09710 8e8e2afd3e587ccae785101f50614652 212 TIGRFAM TIGR02563 cas_Csy4: CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST 15 197 1.5E-24 T 11-11-2016 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 vm_RS09710 8e8e2afd3e587ccae785101f50614652 212 Pfam PF09618 CRISPR-associated protein (Cas_Csy4) 13 197 2.0E-24 T 11-11-2016 IPR013396 CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST GO:0004519|GO:0043571 vm_RS07225 82c045ead8905ad540bb9dca9baea5fe 206 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 127 204 2.1E-19 T 11-11-2016 IPR006260 TonB, C-terminal GO:0006810 vm_RS07225 82c045ead8905ad540bb9dca9baea5fe 206 PRINTS PR01374 Gram-negative bacterial tonB protein signature 121 142 5.0E-12 T 11-11-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 vm_RS07225 82c045ead8905ad540bb9dca9baea5fe 206 PRINTS PR01374 Gram-negative bacterial tonB protein signature 142 160 5.0E-12 T 11-11-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 vm_RS07225 82c045ead8905ad540bb9dca9baea5fe 206 PRINTS PR01374 Gram-negative bacterial tonB protein signature 161 178 5.0E-12 T 11-11-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 vm_RS07225 82c045ead8905ad540bb9dca9baea5fe 206 Gene3D G3DSA:3.30.1150.10 114 205 4.0E-11 T 11-11-2016 vm_RS07225 82c045ead8905ad540bb9dca9baea5fe 206 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 126 204 3.4E-19 T 11-11-2016 IPR006260 TonB, C-terminal GO:0006810 vm_RS07225 82c045ead8905ad540bb9dca9baea5fe 206 SUPERFAMILY SSF74653 118 194 9.68E-24 T 11-11-2016 vm_RS04555 1b7498c6757e3ad55e14f5a4c26321c2 76 SUPERFAMILY SSF46785 2 51 3.12E-12 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS04555 1b7498c6757e3ad55e14f5a4c26321c2 76 Pfam PF09012 FeoC like transcriptional regulator 2 53 7.6E-14 T 11-11-2016 IPR015102 Transcriptional regulator HTH-type, FeoC vm_RS04555 1b7498c6757e3ad55e14f5a4c26321c2 76 Gene3D G3DSA:1.10.10.10 8 52 3.5E-5 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS12865 ba02e8ee4a257fed1f2efed993aa1e32 340 Pfam PF08808 RES domain 163 326 4.3E-21 T 11-11-2016 IPR014914 RES domain vm_RS12865 ba02e8ee4a257fed1f2efed993aa1e32 340 SMART SM00953 181 328 5.9E-5 T 11-11-2016 IPR014914 RES domain vm_RS13790 f0faf4bd12a5a85c25e51641590ba907 240 Pfam PF08348 YheO-like PAS domain 31 139 8.7E-35 T 11-11-2016 IPR013559 YheO-like vm_RS13790 f0faf4bd12a5a85c25e51641590ba907 240 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 30 143 8.0E-62 T 11-11-2016 IPR013559 YheO-like vm_RS13790 f0faf4bd12a5a85c25e51641590ba907 240 Pfam PF13309 HTH domain 174 231 1.6E-17 T 11-11-2016 vm_RS02320 2e8b748f4813f58b07b66fb7e38109f1 319 Pfam PF01699 Sodium/calcium exchanger protein 5 143 8.5E-27 T 11-11-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 vm_RS02320 2e8b748f4813f58b07b66fb7e38109f1 319 Pfam PF01699 Sodium/calcium exchanger protein 175 316 1.6E-30 T 11-11-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: R-HSA-425561 vm_RS02320 2e8b748f4813f58b07b66fb7e38109f1 319 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 3 311 5.6E-85 T 11-11-2016 IPR004481 Sodium/potassium/calcium exchanger Reactome: R-HSA-425561 vm_RS12710 906c323520bea480a4918a99e2f9ef52 169 SMART SM00247 89 167 6.5E-4 T 11-11-2016 IPR001064 Beta/gamma crystallin vm_RS12710 906c323520bea480a4918a99e2f9ef52 169 SUPERFAMILY SSF49695 87 167 9.98E-13 T 11-11-2016 IPR011024 Gamma-crystallin-related vm_RS12710 906c323520bea480a4918a99e2f9ef52 169 Pfam PF00030 Beta/Gamma crystallin 90 167 4.4E-6 T 11-11-2016 IPR001064 Beta/gamma crystallin vm_RS12710 906c323520bea480a4918a99e2f9ef52 169 Gene3D G3DSA:2.60.20.10 89 166 5.0E-17 T 11-11-2016 vm_RS06785 8b5f93a04829c7f8d1afb9e63e039cde 219 Pfam PF11140 Protein of unknown function (DUF2913) 3 213 2.3E-86 T 11-11-2016 IPR021316 Protein of unknown function DUF2913 vm_RS09680 c856a3eb536fd325380c95862c7fccb4 169 SUPERFAMILY SSF52540 1 136 3.88E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09680 c856a3eb536fd325380c95862c7fccb4 169 Gene3D G3DSA:3.40.50.300 3 139 9.5E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09680 c856a3eb536fd325380c95862c7fccb4 169 Pfam PF13207 AAA domain 9 122 7.3E-14 T 11-11-2016 vm_RS05105 6990f08c181ce80796af101cb5194a01 288 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 126 146 - T 11-11-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 vm_RS05105 6990f08c181ce80796af101cb5194a01 288 Gene3D G3DSA:1.10.12.10 226 276 4.0E-31 T 11-11-2016 IPR014748 Crontonase, C-terminal vm_RS05105 6990f08c181ce80796af101cb5194a01 288 TIGRFAM TIGR01929 menB: naphthoate synthase 25 284 9.7E-145 T 11-11-2016 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 vm_RS05105 6990f08c181ce80796af101cb5194a01 288 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 18 287 56.41 T 11-11-2016 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837 vm_RS05105 6990f08c181ce80796af101cb5194a01 288 Pfam PF00378 Enoyl-CoA hydratase/isomerase 34 282 4.2E-78 T 11-11-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 vm_RS05105 6990f08c181ce80796af101cb5194a01 288 SUPERFAMILY SSF52096 17 284 6.12E-79 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS05105 6990f08c181ce80796af101cb5194a01 288 Gene3D G3DSA:3.90.226.10 25 225 4.4E-69 T 11-11-2016 IPR029045 ClpP/crotonase-like domain vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 PIRSF PIRSF002560 1 157 4.3E-73 T 11-11-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 TIGRFAM TIGR00754 bfr: bacterioferritin 1 157 4.5E-85 T 11-11-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 Gene3D G3DSA:1.20.1260.10 1 155 5.5E-67 T 11-11-2016 IPR012347 Ferritin-related vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 SUPERFAMILY SSF47240 1 153 3.45E-56 T 11-11-2016 IPR009078 Ferritin-like superfamily vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 11-11-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 Pfam PF00210 Ferritin-like domain 8 143 1.3E-41 T 11-11-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 PRINTS PR00601 Bacterioferritin signature 86 106 2.1E-72 T 11-11-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 PRINTS PR00601 Bacterioferritin signature 23 43 2.1E-72 T 11-11-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 PRINTS PR00601 Bacterioferritin signature 65 85 2.1E-72 T 11-11-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 PRINTS PR00601 Bacterioferritin signature 107 127 2.1E-72 T 11-11-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 PRINTS PR00601 Bacterioferritin signature 128 149 2.1E-72 T 11-11-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 PRINTS PR00601 Bacterioferritin signature 3 22 2.1E-72 T 11-11-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 vm_RS13745 7a5585c52b088ee8a9b6a9c4e1697cda 158 PRINTS PR00601 Bacterioferritin signature 44 64 2.1E-72 T 11-11-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 vm_RS08605 739e19425d418172c33f27d3a9f299cd 92 Gene3D G3DSA:3.10.20.30 11 83 6.3E-19 T 11-11-2016 IPR012675 Beta-grasp domain vm_RS08605 739e19425d418172c33f27d3a9f299cd 92 SUPERFAMILY SSF54292 8 82 9.18E-20 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 vm_RS08605 739e19425d418172c33f27d3a9f299cd 92 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 35 43 - T 11-11-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 vm_RS08605 739e19425d418172c33f27d3a9f299cd 92 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 9 74 1.1E-9 T 11-11-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 vm_RS00645 de4a01ad73544077d2d3bda5f4d13b17 337 Pfam PF01757 Acyltransferase family 7 327 6.4E-31 T 11-11-2016 IPR002656 Acyltransferase 3 GO:0016747 vm_RS07805 1ba7c44780d5b8c21fdaab056bf0a009 81 Pfam PF11391 Protein of unknown function (DUF2798) 13 69 3.3E-18 T 11-11-2016 IPR021529 Protein of unknown function DUF2798 vm_RS05890 3822afca7771b053f987be324215827b 173 Gene3D G3DSA:3.30.1330.60 61 172 5.5E-34 T 11-11-2016 IPR006665 OmpA-like domain vm_RS05890 3822afca7771b053f987be324215827b 173 SUPERFAMILY SSF103088 64 173 3.92E-34 T 11-11-2016 IPR006665 OmpA-like domain vm_RS05890 3822afca7771b053f987be324215827b 173 PRINTS PR01021 OMPA domain signature 73 95 7.7E-16 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS05890 3822afca7771b053f987be324215827b 173 PRINTS PR01021 OMPA domain signature 118 134 7.7E-16 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS05890 3822afca7771b053f987be324215827b 173 PRINTS PR01021 OMPA domain signature 103 118 7.7E-16 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS05890 3822afca7771b053f987be324215827b 173 Pfam PF00691 OmpA family 72 167 9.4E-22 T 11-11-2016 IPR006665 OmpA-like domain vm_RS05890 3822afca7771b053f987be324215827b 173 ProSitePatterns PS01068 OmpA-like domain. 105 149 - T 11-11-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 vm_RS05890 3822afca7771b053f987be324215827b 173 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 70 173 3.9E-45 T 11-11-2016 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 vm_RS07245 2fd92d91e6aad84ec5eb2c9cfca18a21 457 PIRSF PIRSF006603 5 455 3.0E-62 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS07245 2fd92d91e6aad84ec5eb2c9cfca18a21 457 TIGRFAM TIGR00797 matE: MATE efflux family protein 17 422 2.0E-118 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS07245 2fd92d91e6aad84ec5eb2c9cfca18a21 457 Pfam PF01554 MatE 17 176 8.2E-37 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS07245 2fd92d91e6aad84ec5eb2c9cfca18a21 457 Pfam PF01554 MatE 243 404 7.0E-37 T 11-11-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 vm_RS12085 c969bedd1128f372b5c4a236df1a4068 340 Gene3D G3DSA:3.40.50.150 168 337 1.4E-22 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS12085 c969bedd1128f372b5c4a236df1a4068 340 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 269 275 - T 11-11-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 vm_RS12085 c969bedd1128f372b5c4a236df1a4068 340 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 4 340 46.399 T 11-11-2016 IPR023543 rRNA small subunit methyltransferase C GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS12085 c969bedd1128f372b5c4a236df1a4068 340 SUPERFAMILY SSF53335 157 320 4.59E-28 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS12085 c969bedd1128f372b5c4a236df1a4068 340 Pfam PF05175 Methyltransferase small domain 172 336 1.6E-59 T 11-11-2016 IPR007848 Methyltransferase small domain GO:0008168 vm_RS12085 c969bedd1128f372b5c4a236df1a4068 340 Pfam PF08468 Methyltransferase small domain N-terminal 9 163 1.5E-56 T 11-11-2016 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 vm_RS10535 ea25cf469af2d12901094758b66850cc 152 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 1 129 7.6E-18 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily vm_RS10535 ea25cf469af2d12901094758b66850cc 152 SMART SM00226 1 132 2.5E-5 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily vm_RS10535 ea25cf469af2d12901094758b66850cc 152 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 63 78 9.0E-6 T 11-11-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 vm_RS10535 ea25cf469af2d12901094758b66850cc 152 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 104 119 9.0E-6 T 11-11-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 vm_RS10535 ea25cf469af2d12901094758b66850cc 152 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 86 99 9.0E-6 T 11-11-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 vm_RS10535 ea25cf469af2d12901094758b66850cc 152 SUPERFAMILY SSF52788 1 132 2.22E-25 T 11-11-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily vm_RS10535 ea25cf469af2d12901094758b66850cc 152 Gene3D G3DSA:3.40.50.270 1 135 5.1E-26 T 11-11-2016 vm_RS02800 326ef9f272660f257e3914562940860e 438 Pfam PF02321 Outer membrane efflux protein 25 207 3.4E-26 T 11-11-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 vm_RS02800 326ef9f272660f257e3914562940860e 438 Pfam PF02321 Outer membrane efflux protein 231 419 1.9E-34 T 11-11-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 vm_RS02800 326ef9f272660f257e3914562940860e 438 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 22 433 1.3E-109 T 11-11-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 vm_RS02800 326ef9f272660f257e3914562940860e 438 SUPERFAMILY SSF56954 1 425 4.97E-91 T 11-11-2016 vm_RS02800 326ef9f272660f257e3914562940860e 438 Gene3D G3DSA:1.20.1600.10 22 426 3.4E-81 T 11-11-2016 vm_RS04770 394533ea68173f362c5b185afb2c84a8 333 Pfam PF04245 37-kD nucleoid-associated bacterial protein 9 326 4.1E-99 T 11-11-2016 IPR007358 Nucleoid-associated protein NdpA GO:0009295 vm_RS04770 394533ea68173f362c5b185afb2c84a8 333 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 3 332 46.561 T 11-11-2016 IPR007358 Nucleoid-associated protein NdpA GO:0009295 vm_RS00625 98bb86064683d8787ad9edbbf6400521 331 Pfam PF12146 Serine aminopeptidase, S33 53 310 4.7E-62 T 11-11-2016 IPR022742 Serine aminopeptidase, S33 vm_RS00625 98bb86064683d8787ad9edbbf6400521 331 Gene3D G3DSA:3.40.50.1820 28 324 7.9E-39 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS00625 98bb86064683d8787ad9edbbf6400521 331 SUPERFAMILY SSF53474 38 321 9.47E-37 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS11535 b0396ed260bb6901eebd17eca84bf58f 548 SUPERFAMILY SSF161098 259 529 6.54E-35 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS11535 b0396ed260bb6901eebd17eca84bf58f 548 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 279 539 1.3E-76 T 11-11-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 vm_RS11535 b0396ed260bb6901eebd17eca84bf58f 548 Gene3D G3DSA:1.10.3720.10 23 43 7.8E-48 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS11535 b0396ed260bb6901eebd17eca84bf58f 548 Gene3D G3DSA:1.10.3720.10 274 543 7.8E-48 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS11535 b0396ed260bb6901eebd17eca84bf58f 548 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 315 535 1.5E-16 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS13500 6cad552aecfc5ea2395553ef16281fa0 575 Pfam PF00437 Type II/IV secretion system protein 192 454 3.6E-74 T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 vm_RS13500 6cad552aecfc5ea2395553ef16281fa0 575 Gene3D G3DSA:3.30.450.90 159 287 8.4E-47 T 11-11-2016 vm_RS13500 6cad552aecfc5ea2395553ef16281fa0 575 SMART SM00382 315 436 0.008 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS13500 6cad552aecfc5ea2395553ef16281fa0 575 SUPERFAMILY SSF160246 5 146 8.63E-39 T 11-11-2016 vm_RS13500 6cad552aecfc5ea2395553ef16281fa0 575 Gene3D G3DSA:3.40.50.300 292 560 2.1E-88 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13500 6cad552aecfc5ea2395553ef16281fa0 575 SUPERFAMILY SSF52540 174 559 1.71E-92 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS13500 6cad552aecfc5ea2395553ef16281fa0 575 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 382 396 - T 11-11-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 vm_RS13500 6cad552aecfc5ea2395553ef16281fa0 575 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 43 149 3.2E-22 T 11-11-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 vm_RS12535 53f1b2ca41cc3f4654f894e09ebdb77a 250 SUPERFAMILY SSF64167 1 246 8.24E-86 T 11-11-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 vm_RS12535 53f1b2ca41cc3f4654f894e09ebdb77a 250 Gene3D G3DSA:3.40.1210.10 1 245 4.5E-90 T 11-11-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 vm_RS12535 53f1b2ca41cc3f4654f894e09ebdb77a 250 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 232 2.4E-74 T 11-11-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 vm_RS12535 53f1b2ca41cc3f4654f894e09ebdb77a 250 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 249 41.438 T 11-11-2016 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 vm_RS12535 53f1b2ca41cc3f4654f894e09ebdb77a 250 Pfam PF01975 Survival protein SurE 3 181 2.2E-60 T 11-11-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 vm_RS00035 5ac8c085efd9268005bd4fc4e2e19ae1 145 Gene3D G3DSA:2.60.40.790 5 137 4.2E-19 T 11-11-2016 IPR008978 HSP20-like chaperone vm_RS00035 5ac8c085efd9268005bd4fc4e2e19ae1 145 Pfam PF00011 Hsp20/alpha crystallin family 43 137 3.7E-20 T 11-11-2016 IPR002068 Alpha crystallin/Hsp20 domain vm_RS00035 5ac8c085efd9268005bd4fc4e2e19ae1 145 SUPERFAMILY SSF49764 6 138 2.86E-23 T 11-11-2016 IPR008978 HSP20-like chaperone vm_RS05380 4e7be329c247979921a3cd8efb0f9563 179 Pfam PF07700 Haem-NO-binding 2 158 1.9E-35 T 11-11-2016 IPR011644 Heme-NO binding GO:0020037 KEGG: 00230+4.6.1.2|Reactome: R-HSA-392154 vm_RS05380 4e7be329c247979921a3cd8efb0f9563 179 SUPERFAMILY SSF111126 1 174 3.3E-42 T 11-11-2016 IPR024096 NO signalling/Golgi transport ligand-binding domain vm_RS05380 4e7be329c247979921a3cd8efb0f9563 179 Gene3D G3DSA:3.90.1520.10 1 174 6.5E-48 T 11-11-2016 vm_RS02200 149ccd95838d9a779a83f215b778b7ee 115 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 5 112 2.0E-27 T 11-11-2016 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like vm_RS02200 149ccd95838d9a779a83f215b778b7ee 115 Gene3D G3DSA:3.10.490.10 2 114 3.4E-40 T 11-11-2016 IPR013024 Butirosin biosynthesis, BtrG-like vm_RS02200 149ccd95838d9a779a83f215b778b7ee 115 SUPERFAMILY SSF110857 3 114 6.02E-33 T 11-11-2016 IPR013024 Butirosin biosynthesis, BtrG-like vm_RS04075 8908434e2a2ddda4f66a01a187341d3c 160 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 156 8.4E-60 T 11-11-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC vm_RS04075 8908434e2a2ddda4f66a01a187341d3c 160 SUPERFAMILY SSF55826 2 157 1.96E-45 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 vm_RS04075 8908434e2a2ddda4f66a01a187341d3c 160 PIRSF PIRSF006181 1 159 1.4E-54 T 11-11-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC vm_RS04075 8908434e2a2ddda4f66a01a187341d3c 160 Pfam PF04073 Aminoacyl-tRNA editing domain 32 147 4.2E-26 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 vm_RS04075 8908434e2a2ddda4f66a01a187341d3c 160 Gene3D G3DSA:3.90.960.10 1 158 1.1E-60 T 11-11-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 vm_RS00545 f09dcef3a4cc307ef600e58ca2d7fca8 402 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 62 390 2.0E-104 T 11-11-2016 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX vm_RS18430 6e0c58939e2f7cea1483445dd055811d 82 SUPERFAMILY SSF56042 52 79 2.13E-5 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain vm_RS18430 6e0c58939e2f7cea1483445dd055811d 82 Gene3D G3DSA:3.30.1330.10 1 50 2.2E-11 T 11-11-2016 IPR016188 PurM-like, N-terminal domain vm_RS18430 6e0c58939e2f7cea1483445dd055811d 82 SUPERFAMILY SSF55326 2 51 1.99E-7 T 11-11-2016 vm_RS18430 6e0c58939e2f7cea1483445dd055811d 82 Gene3D G3DSA:3.90.650.10 54 81 3.3E-7 T 11-11-2016 IPR010918 AIR synthase-related protein, C-terminal domain vm_RS08280 8468056e78c88e3612e0080d6a3ba049 191 Pfam PF13302 Acetyltransferase (GNAT) domain 19 160 3.1E-19 T 11-11-2016 IPR000182 GNAT domain GO:0008080 vm_RS08280 8468056e78c88e3612e0080d6a3ba049 191 SUPERFAMILY SSF55729 14 185 6.31E-41 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS08280 8468056e78c88e3612e0080d6a3ba049 191 Gene3D G3DSA:3.40.630.30 15 186 1.0E-41 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS08750 304a7b07a3fd61c181e725649de8f9d4 161 SUPERFAMILY SSF55729 1 159 3.43E-27 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS08750 304a7b07a3fd61c181e725649de8f9d4 161 Pfam PF00583 Acetyltransferase (GNAT) family 61 138 9.4E-13 T 11-11-2016 IPR000182 GNAT domain GO:0008080 vm_RS08750 304a7b07a3fd61c181e725649de8f9d4 161 Gene3D G3DSA:3.40.630.30 1 160 9.8E-35 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS00400 1f5af0a4de8ac973df7ff7c9abbb866e 260 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 45 60 - T 11-11-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 vm_RS00400 1f5af0a4de8ac973df7ff7c9abbb866e 260 SUPERFAMILY SSF53335 28 258 2.48E-51 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS00400 1f5af0a4de8ac973df7ff7c9abbb866e 260 Pfam PF01209 ubiE/COQ5 methyltransferase family 29 259 8.2E-103 T 11-11-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 vm_RS00400 1f5af0a4de8ac973df7ff7c9abbb866e 260 Gene3D G3DSA:3.40.50.150 33 256 1.4E-59 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS00400 1f5af0a4de8ac973df7ff7c9abbb866e 260 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 34 259 3.6E-83 T 11-11-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 vm_RS00400 1f5af0a4de8ac973df7ff7c9abbb866e 260 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 25 259 38.171 T 11-11-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|Reactome: R-HSA-2142789 vm_RS00400 1f5af0a4de8ac973df7ff7c9abbb866e 260 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 167 181 - T 11-11-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 vm_RS00300 3d7291abb9a7f73f60c4bc10bdfb85f4 68 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 5 68 1.6E-17 T 11-11-2016 IPR010035 ThiS, thiamine-biosynthesis vm_RS00300 3d7291abb9a7f73f60c4bc10bdfb85f4 68 Gene3D G3DSA:3.10.20.30 4 68 5.3E-21 T 11-11-2016 IPR012675 Beta-grasp domain vm_RS00300 3d7291abb9a7f73f60c4bc10bdfb85f4 68 SUPERFAMILY SSF54285 4 68 4.36E-15 T 11-11-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp vm_RS00300 3d7291abb9a7f73f60c4bc10bdfb85f4 68 Pfam PF02597 ThiS family 6 68 1.0E-12 T 11-11-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 Reactome: R-HSA-947581 vm_RS11725 726b3f986df6cf49eb18e3c0f3a5554b 370 Gene3D G3DSA:3.30.420.40 6 197 2.0E-73 T 11-11-2016 vm_RS11725 726b3f986df6cf49eb18e3c0f3a5554b 370 SUPERFAMILY SSF53067 6 40 4.75E-26 T 11-11-2016 vm_RS11725 726b3f986df6cf49eb18e3c0f3a5554b 370 SUPERFAMILY SSF53067 67 112 4.75E-26 T 11-11-2016 vm_RS11725 726b3f986df6cf49eb18e3c0f3a5554b 370 SUPERFAMILY SSF53067 144 343 4.75E-26 T 11-11-2016 vm_RS11725 726b3f986df6cf49eb18e3c0f3a5554b 370 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 5 369 41.965 T 11-11-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 vm_RS11725 726b3f986df6cf49eb18e3c0f3a5554b 370 Pfam PF03702 Uncharacterised protein family (UPF0075) 6 368 1.2E-178 T 11-11-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17 vm_RS11675 ff2082390bc755ba9a82c3bde151b4ce 174 TIGRFAM TIGR00258 TIGR00258: inosine/xanthosine triphosphatase 6 171 1.5E-49 T 11-11-2016 IPR002786 Non-canonical purine NTP phosphatase vm_RS11675 ff2082390bc755ba9a82c3bde151b4ce 174 Hamap MF_00648 Non-canonical purine NTP phosphatase. 2 171 31.083 T 11-11-2016 IPR002786 Non-canonical purine NTP phosphatase vm_RS11675 ff2082390bc755ba9a82c3bde151b4ce 174 SUPERFAMILY SSF52972 1 171 3.84E-63 T 11-11-2016 IPR029001 Inosine triphosphate pyrophosphatase-like vm_RS11675 ff2082390bc755ba9a82c3bde151b4ce 174 Pfam PF01931 Protein of unknown function DUF84 7 166 5.1E-58 T 11-11-2016 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 vm_RS11675 ff2082390bc755ba9a82c3bde151b4ce 174 Gene3D G3DSA:3.90.950.10 2 171 1.5E-65 T 11-11-2016 IPR029001 Inosine triphosphate pyrophosphatase-like vm_RS03495 582f836fef1687f93440524c97c3c78a 451 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 15 36 4.9E-10 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS03495 582f836fef1687f93440524c97c3c78a 451 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 311 330 4.9E-10 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS03495 582f836fef1687f93440524c97c3c78a 451 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 44 63 4.9E-10 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS03495 582f836fef1687f93440524c97c3c78a 451 Pfam PF00209 Sodium:neurotransmitter symporter family 152 449 1.0E-26 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS03495 582f836fef1687f93440524c97c3c78a 451 Pfam PF00209 Sodium:neurotransmitter symporter family 7 127 5.7E-22 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS03495 582f836fef1687f93440524c97c3c78a 451 SUPERFAMILY SSF161070 7 450 7.19E-120 T 11-11-2016 vm_RS03410 bf4b1bd70bfdab6723a89d166c0933a0 226 Pfam PF12973 ChrR Cupin-like domain 121 200 2.3E-12 T 11-11-2016 IPR025979 ChrR-like cupin domain vm_RS03410 bf4b1bd70bfdab6723a89d166c0933a0 226 SUPERFAMILY SSF51182 115 209 1.29E-12 T 11-11-2016 IPR011051 RmlC-like cupin domain vm_RS03410 bf4b1bd70bfdab6723a89d166c0933a0 226 TIGRFAM TIGR02451 anti_sig_ChrR: anti-sigma factor, putative, ChrR family 3 223 5.7E-85 T 11-11-2016 IPR012807 Anti-sigma factor ChrR, putative vm_RS03410 bf4b1bd70bfdab6723a89d166c0933a0 226 Gene3D G3DSA:2.60.120.10 114 210 1.2E-12 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS03410 bf4b1bd70bfdab6723a89d166c0933a0 226 Pfam PF13490 Putative zinc-finger 9 37 7.7E-6 T 11-11-2016 IPR027383 Putative zinc-finger vm_RS07685 9b023ca1c2a20422d053bdfe207d60bc 458 PRINTS PR00175 Sodium/alanine symporter signature 412 432 7.4E-52 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS07685 9b023ca1c2a20422d053bdfe207d60bc 458 PRINTS PR00175 Sodium/alanine symporter signature 184 202 7.4E-52 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS07685 9b023ca1c2a20422d053bdfe207d60bc 458 PRINTS PR00175 Sodium/alanine symporter signature 212 231 7.4E-52 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS07685 9b023ca1c2a20422d053bdfe207d60bc 458 PRINTS PR00175 Sodium/alanine symporter signature 92 114 7.4E-52 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS07685 9b023ca1c2a20422d053bdfe207d60bc 458 PRINTS PR00175 Sodium/alanine symporter signature 307 325 7.4E-52 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS07685 9b023ca1c2a20422d053bdfe207d60bc 458 PRINTS PR00175 Sodium/alanine symporter signature 353 375 7.4E-52 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS07685 9b023ca1c2a20422d053bdfe207d60bc 458 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 443 6.1E-156 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS07685 9b023ca1c2a20422d053bdfe207d60bc 458 Pfam PF01235 Sodium:alanine symporter family 54 447 2.7E-140 T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS07685 9b023ca1c2a20422d053bdfe207d60bc 458 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 92 107 - T 11-11-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 vm_RS05465 8257e531c6878e876efffe5fa86e048b 106 SUPERFAMILY SSF52091 13 101 2.55E-18 T 11-11-2016 IPR002645 STAS domain vm_RS05465 8257e531c6878e876efffe5fa86e048b 106 Gene3D G3DSA:3.30.750.24 9 102 1.9E-18 T 11-11-2016 IPR002645 STAS domain vm_RS05465 8257e531c6878e876efffe5fa86e048b 106 Pfam PF01740 STAS domain 11 95 2.7E-10 T 11-11-2016 IPR002645 STAS domain vm_RS10290 9d2206ab4fb3f659774f9eeffaf21abe 322 TIGRFAM TIGR01139 cysK: cysteine synthase A 9 311 4.8E-142 T 11-11-2016 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 vm_RS10290 9d2206ab4fb3f659774f9eeffaf21abe 322 SUPERFAMILY SSF53686 3 313 2.62E-96 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS10290 9d2206ab4fb3f659774f9eeffaf21abe 322 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 10 299 4.5E-68 T 11-11-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme vm_RS10290 9d2206ab4fb3f659774f9eeffaf21abe 322 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 31 49 - T 11-11-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 vm_RS10290 9d2206ab4fb3f659774f9eeffaf21abe 322 Gene3D G3DSA:3.40.50.1100 133 312 4.9E-74 T 11-11-2016 vm_RS10290 9d2206ab4fb3f659774f9eeffaf21abe 322 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 311 4.0E-135 T 11-11-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 vm_RS10290 9d2206ab4fb3f659774f9eeffaf21abe 322 Gene3D G3DSA:3.40.50.1100 36 132 3.5E-38 T 11-11-2016 vm_RS03250 f49092b148c1a2901d7afccb27dbeca6 561 Gene3D G3DSA:2.30.38.10 370 434 3.4E-18 T 11-11-2016 vm_RS03250 f49092b148c1a2901d7afccb27dbeca6 561 Pfam PF00501 AMP-binding enzyme 23 440 4.5E-87 T 11-11-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 vm_RS03250 f49092b148c1a2901d7afccb27dbeca6 561 ProSitePatterns PS00455 Putative AMP-binding domain signature. 182 193 - T 11-11-2016 IPR020845 AMP-binding, conserved site vm_RS03250 f49092b148c1a2901d7afccb27dbeca6 561 Gene3D G3DSA:3.40.50.980 189 368 6.9E-26 T 11-11-2016 vm_RS03250 f49092b148c1a2901d7afccb27dbeca6 561 Gene3D G3DSA:3.40.50.980 19 188 8.4E-29 T 11-11-2016 vm_RS03250 f49092b148c1a2901d7afccb27dbeca6 561 SUPERFAMILY SSF56801 15 547 7.46E-109 T 11-11-2016 vm_RS03180 f7591089c85b5ff05105f5e33dc4a9d7 274 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 13 21 - T 11-11-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 vm_RS03180 f7591089c85b5ff05105f5e33dc4a9d7 274 Gene3D G3DSA:3.20.20.140 7 266 8.4E-78 T 11-11-2016 vm_RS03180 f7591089c85b5ff05105f5e33dc4a9d7 274 PIRSF PIRSF005902 1 269 1.4E-67 T 11-11-2016 IPR001130 TatD family GO:0016788 vm_RS03180 f7591089c85b5ff05105f5e33dc4a9d7 274 SUPERFAMILY SSF51556 13 266 1.73E-73 T 11-11-2016 IPR032466 Metal-dependent hydrolase vm_RS03180 f7591089c85b5ff05105f5e33dc4a9d7 274 Pfam PF01026 TatD related DNase 14 264 9.1E-67 T 11-11-2016 IPR001130 TatD family GO:0016788 vm_RS04610 8c75875534bc62571237dd4d32feeee1 122 Pfam PF00072 Response regulator receiver domain 3 115 1.1E-32 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS04610 8c75875534bc62571237dd4d32feeee1 122 SUPERFAMILY SSF52172 1 121 1.57E-37 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS04610 8c75875534bc62571237dd4d32feeee1 122 Gene3D G3DSA:3.40.50.2300 1 121 9.2E-40 T 11-11-2016 vm_RS04610 8c75875534bc62571237dd4d32feeee1 122 SMART SM00448 1 115 3.5E-35 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS03915 adf61d4d76a8ace72f02f51f7f42ac67 624 PRINTS PR01005 Flagellar hook-associated protein signature 12 35 1.0E-8 T 11-11-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 vm_RS03915 adf61d4d76a8ace72f02f51f7f42ac67 624 PRINTS PR01005 Flagellar hook-associated protein signature 214 232 1.0E-8 T 11-11-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 vm_RS03915 adf61d4d76a8ace72f02f51f7f42ac67 624 PRINTS PR01005 Flagellar hook-associated protein signature 50 72 1.0E-8 T 11-11-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 vm_RS03915 adf61d4d76a8ace72f02f51f7f42ac67 624 PRINTS PR01005 Flagellar hook-associated protein signature 360 382 1.0E-8 T 11-11-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 vm_RS03915 adf61d4d76a8ace72f02f51f7f42ac67 624 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 578 622 5.1E-9 T 11-11-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain vm_RS03915 adf61d4d76a8ace72f02f51f7f42ac67 624 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 5 345 1.4E-59 T 11-11-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 vm_RS03915 adf61d4d76a8ace72f02f51f7f42ac67 624 SUPERFAMILY SSF64518 168 359 4.71E-25 T 11-11-2016 vm_RS03915 adf61d4d76a8ace72f02f51f7f42ac67 624 SUPERFAMILY SSF64518 448 622 4.71E-25 T 11-11-2016 vm_RS09380 c23e14073904f1ac2b59b0e3f10c4a3e 323 Pfam PF00005 ABC transporter 24 180 1.8E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS09380 c23e14073904f1ac2b59b0e3f10c4a3e 323 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS09380 c23e14073904f1ac2b59b0e3f10c4a3e 323 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 296 1.8E-18 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 vm_RS09380 c23e14073904f1ac2b59b0e3f10c4a3e 323 SMART SM00382 32 238 5.4E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS09380 c23e14073904f1ac2b59b0e3f10c4a3e 323 SUPERFAMILY SSF52540 31 301 1.08E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09380 c23e14073904f1ac2b59b0e3f10c4a3e 323 Gene3D G3DSA:3.40.50.300 2 254 4.1E-72 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09380 c23e14073904f1ac2b59b0e3f10c4a3e 323 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 232 315 3.8E-23 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 vm_RS08920 2722a0012c12a71d9e3f23af0ffede0b 253 Pfam PF02698 DUF218 domain 71 207 1.1E-19 T 11-11-2016 IPR003848 Domain of unknown function DUF218 vm_RS08920 2722a0012c12a71d9e3f23af0ffede0b 253 Gene3D G3DSA:3.40.50.620 64 190 2.9E-8 T 11-11-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold vm_RS01790 7819811e542168f3475c759d6002e058 174 Hamap MF_00109 Shikimate kinase [aroK]. 4 170 29.663 T 11-11-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 vm_RS01790 7819811e542168f3475c759d6002e058 174 Gene3D G3DSA:3.40.50.300 2 172 2.9E-59 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01790 7819811e542168f3475c759d6002e058 174 ProSitePatterns PS01128 Shikimate kinase signature. 60 85 - T 11-11-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 vm_RS01790 7819811e542168f3475c759d6002e058 174 SUPERFAMILY SSF52540 4 169 1.33E-32 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01790 7819811e542168f3475c759d6002e058 174 PRINTS PR01100 Shikimate kinase family signature 98 115 4.0E-29 T 11-11-2016 vm_RS01790 7819811e542168f3475c759d6002e058 174 PRINTS PR01100 Shikimate kinase family signature 7 22 4.0E-29 T 11-11-2016 vm_RS01790 7819811e542168f3475c759d6002e058 174 PRINTS PR01100 Shikimate kinase family signature 77 86 4.0E-29 T 11-11-2016 vm_RS01790 7819811e542168f3475c759d6002e058 174 PRINTS PR01100 Shikimate kinase family signature 31 44 4.0E-29 T 11-11-2016 vm_RS01790 7819811e542168f3475c759d6002e058 174 PRINTS PR01100 Shikimate kinase family signature 59 67 4.0E-29 T 11-11-2016 vm_RS01790 7819811e542168f3475c759d6002e058 174 Pfam PF01202 Shikimate kinase 13 169 6.0E-57 T 11-11-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163 vm_RS08325 d735883759e2fc157d7a6e171de1c0f1 453 Gene3D G3DSA:3.30.1330.90 10 158 1.2E-53 T 11-11-2016 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 vm_RS08325 d735883759e2fc157d7a6e171de1c0f1 453 SUPERFAMILY SSF143548 16 158 2.62E-45 T 11-11-2016 IPR029009 Allosteric substrate binding domain Reactome: R-HSA-977347 vm_RS08325 d735883759e2fc157d7a6e171de1c0f1 453 Pfam PF03313 Serine dehydratase alpha chain 184 448 9.3E-99 T 11-11-2016 IPR005130 Serine dehydratase-like, alpha subunit vm_RS08325 d735883759e2fc157d7a6e171de1c0f1 453 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 2 451 3.4E-230 T 11-11-2016 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 vm_RS08325 d735883759e2fc157d7a6e171de1c0f1 453 Pfam PF03315 Serine dehydratase beta chain 3 155 2.1E-55 T 11-11-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 vm_RS11395 525aece65e3193dfe8d325d11de5213d 142 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 35.998 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 vm_RS11395 525aece65e3193dfe8d325d11de5213d 142 SMART SM00562 3 140 1.2E-91 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 vm_RS11395 525aece65e3193dfe8d325d11de5213d 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 9.2E-38 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 vm_RS11395 525aece65e3193dfe8d325d11de5213d 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 9.2E-38 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 vm_RS11395 525aece65e3193dfe8d325d11de5213d 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 9.2E-38 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 vm_RS11395 525aece65e3193dfe8d325d11de5213d 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 9.2E-38 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 vm_RS11395 525aece65e3193dfe8d325d11de5213d 142 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 9.2E-38 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 vm_RS11395 525aece65e3193dfe8d325d11de5213d 142 Gene3D G3DSA:3.30.70.141 1 140 1.9E-60 T 11-11-2016 vm_RS11395 525aece65e3193dfe8d325d11de5213d 142 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 11-11-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 vm_RS11395 525aece65e3193dfe8d325d11de5213d 142 Pfam PF00334 Nucleoside diphosphate kinase 4 138 4.8E-58 T 11-11-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 vm_RS11395 525aece65e3193dfe8d325d11de5213d 142 SUPERFAMILY SSF54919 1 140 1.07E-61 T 11-11-2016 vm_RS09970 57cddbe9e5a4223d0ec4d4722dad8a94 159 Pfam PF01967 MoaC family 15 150 2.8E-56 T 11-11-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 vm_RS09970 57cddbe9e5a4223d0ec4d4722dad8a94 159 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 2 158 36.202 T 11-11-2016 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type Reactome: R-HSA-947581 vm_RS09970 57cddbe9e5a4223d0ec4d4722dad8a94 159 SUPERFAMILY SSF55040 11 155 7.32E-62 T 11-11-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 vm_RS09970 57cddbe9e5a4223d0ec4d4722dad8a94 159 Gene3D G3DSA:3.30.70.640 3 157 2.6E-70 T 11-11-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 Reactome: R-HSA-947581 vm_RS09970 57cddbe9e5a4223d0ec4d4722dad8a94 159 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 1.7E-71 T 11-11-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 Reactome: R-HSA-947581 vm_RS09595 54a65eedd59b10ac6109c02e6524287d 297 Gene3D G3DSA:3.40.50.1980 124 294 1.9E-53 T 11-11-2016 vm_RS09595 54a65eedd59b10ac6109c02e6524287d 297 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 210 228 1.5E-17 T 11-11-2016 IPR008091 Ferrichrome-binding periplasmic protein vm_RS09595 54a65eedd59b10ac6109c02e6524287d 297 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 54 72 1.5E-17 T 11-11-2016 IPR008091 Ferrichrome-binding periplasmic protein vm_RS09595 54a65eedd59b10ac6109c02e6524287d 297 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 85 100 1.5E-17 T 11-11-2016 IPR008091 Ferrichrome-binding periplasmic protein vm_RS09595 54a65eedd59b10ac6109c02e6524287d 297 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 238 255 1.5E-17 T 11-11-2016 IPR008091 Ferrichrome-binding periplasmic protein vm_RS09595 54a65eedd59b10ac6109c02e6524287d 297 PRINTS PR01715 Ferrichrome-binding periplasmic protein signature 275 288 1.5E-17 T 11-11-2016 IPR008091 Ferrichrome-binding periplasmic protein vm_RS09595 54a65eedd59b10ac6109c02e6524287d 297 Pfam PF01497 Periplasmic binding protein 37 273 1.6E-28 T 11-11-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 vm_RS09595 54a65eedd59b10ac6109c02e6524287d 297 Gene3D G3DSA:3.40.50.1980 32 120 2.7E-33 T 11-11-2016 vm_RS09595 54a65eedd59b10ac6109c02e6524287d 297 SUPERFAMILY SSF53807 32 294 7.06E-59 T 11-11-2016 vm_RS07785 acd76e310c0bc87bec4b795498633009 175 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 25 153 4.4E-19 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component vm_RS14435 487301fbbeece15491e9eb528cdd41e1 355 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 74 304 3.7E-54 T 11-11-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 vm_RS14435 487301fbbeece15491e9eb528cdd41e1 355 SUPERFAMILY SSF53756 10 343 3.77E-89 T 11-11-2016 vm_RS14435 487301fbbeece15491e9eb528cdd41e1 355 Gene3D G3DSA:3.40.50.2000 164 344 6.0E-51 T 11-11-2016 vm_RS14435 487301fbbeece15491e9eb528cdd41e1 355 Gene3D G3DSA:3.40.50.2000 13 154 1.4E-25 T 11-11-2016 vm_RS09340 ec54ba557356299b48c14f21e66cb306 314 Pfam PF02653 Branched-chain amino acid transport system / permease component 7 265 1.8E-27 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 vm_RS14905 01b27de507f05e369adf33ca290d7bee 97 SUPERFAMILY SSF54909 1 95 8.05E-19 T 11-11-2016 IPR011008 Dimeric alpha-beta barrel vm_RS14905 01b27de507f05e369adf33ca290d7bee 97 Pfam PF07045 Domain of unknown function (DUF1330) 2 95 8.4E-21 T 11-11-2016 IPR010753 Domain of unknown function DUF1330 vm_RS14905 01b27de507f05e369adf33ca290d7bee 97 Gene3D G3DSA:3.30.70.900 1 96 5.8E-23 T 11-11-2016 vm_RS05710 eb6d9562b1efaaa4f328182492903f01 644 PIRSF PIRSF000549 1 644 1.2E-285 T 11-11-2016 IPR016230 Serine-protein kinase, PrkA GO:0004672 vm_RS05710 eb6d9562b1efaaa4f328182492903f01 644 Gene3D G3DSA:3.40.50.300 73 170 4.2E-10 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05710 eb6d9562b1efaaa4f328182492903f01 644 Gene3D G3DSA:3.40.50.300 243 329 4.2E-10 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05710 eb6d9562b1efaaa4f328182492903f01 644 SMART SM00763 19 380 1.5E-215 T 11-11-2016 IPR013153 PrkA AAA domain vm_RS05710 eb6d9562b1efaaa4f328182492903f01 644 Pfam PF06798 PrkA serine protein kinase C-terminal domain 383 636 8.5E-74 T 11-11-2016 IPR010650 PrkA C-terminal domain vm_RS05710 eb6d9562b1efaaa4f328182492903f01 644 Pfam PF08298 PrkA AAA domain 20 380 1.8E-173 T 11-11-2016 IPR013153 PrkA AAA domain vm_RS05710 eb6d9562b1efaaa4f328182492903f01 644 SUPERFAMILY SSF52540 71 145 3.61E-18 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05710 eb6d9562b1efaaa4f328182492903f01 644 SUPERFAMILY SSF52540 236 368 3.61E-18 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04970 cab7986f9947409e1ce5a35b77ad5969 334 Pfam PF11059 Protein of unknown function (DUF2860) 32 333 9.5E-102 T 11-11-2016 IPR016896 Protein of unknown function DUF2860 vm_RS04970 cab7986f9947409e1ce5a35b77ad5969 334 PIRSF PIRSF028696 1 334 3.4E-122 T 11-11-2016 IPR016896 Protein of unknown function DUF2860 vm_RS05180 4e662858307b2f998462455578e6aa33 323 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 23 322 1.0E-112 T 11-11-2016 IPR011970 Lytic murein transglycosylase vm_RS05180 4e662858307b2f998462455578e6aa33 323 SUPERFAMILY SSF53955 8 322 3.28E-102 T 11-11-2016 IPR023346 Lysozyme-like domain vm_RS05180 4e662858307b2f998462455578e6aa33 323 Pfam PF13406 Transglycosylase SLT domain 23 319 2.8E-110 T 11-11-2016 IPR031304 Transglycosylase SLT domain 2 vm_RS05180 4e662858307b2f998462455578e6aa33 323 Gene3D G3DSA:1.10.530.10 68 124 6.7E-61 T 11-11-2016 vm_RS05180 4e662858307b2f998462455578e6aa33 323 Gene3D G3DSA:1.10.530.10 205 322 6.7E-61 T 11-11-2016 vm_RS13380 ead6c91b7db4be04e6a56964047cf3f1 316 Gene3D G3DSA:1.10.443.10 49 277 5.5E-18 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS13380 ead6c91b7db4be04e6a56964047cf3f1 316 Pfam PF00589 Phage integrase family 50 275 2.7E-8 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS13380 ead6c91b7db4be04e6a56964047cf3f1 316 SUPERFAMILY SSF56349 67 144 1.88E-14 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS13380 ead6c91b7db4be04e6a56964047cf3f1 316 SUPERFAMILY SSF56349 186 277 1.88E-14 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS09515 77ee07d1d56e48b4fd3ac5134cb31eeb 387 Gene3D G3DSA:3.40.50.10490 4 196 2.9E-71 T 11-11-2016 vm_RS09515 77ee07d1d56e48b4fd3ac5134cb31eeb 387 Gene3D G3DSA:3.40.50.10490 209 373 5.0E-45 T 11-11-2016 vm_RS09515 77ee07d1d56e48b4fd3ac5134cb31eeb 387 Pfam PF01380 SIS domain 59 190 5.0E-14 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 vm_RS09515 77ee07d1d56e48b4fd3ac5134cb31eeb 387 TIGRFAM TIGR02815 agaS_fam: putative sugar isomerase, AgaS family 16 379 8.7E-177 T 11-11-2016 IPR014180 Sugar isomerase, AgaS GO:0016861 vm_RS09515 77ee07d1d56e48b4fd3ac5134cb31eeb 387 SUPERFAMILY SSF53697 19 370 5.67E-51 T 11-11-2016 vm_RS05115 20b0cb0155caf72e0c2ea5e49496089a 477 Gene3D G3DSA:3.40.50.980 7 164 6.6E-25 T 11-11-2016 vm_RS05115 20b0cb0155caf72e0c2ea5e49496089a 477 Pfam PF00501 AMP-binding enzyme 15 375 3.1E-53 T 11-11-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 vm_RS05115 20b0cb0155caf72e0c2ea5e49496089a 477 Pfam PF13193 AMP-binding enzyme C-terminal domain 384 441 2.2E-5 T 11-11-2016 IPR025110 AMP-binding enzyme C-terminal domain vm_RS05115 20b0cb0155caf72e0c2ea5e49496089a 477 Gene3D G3DSA:3.30.300.30 370 466 7.9E-18 T 11-11-2016 vm_RS05115 20b0cb0155caf72e0c2ea5e49496089a 477 Gene3D G3DSA:2.30.38.10 319 369 5.6E-5 T 11-11-2016 vm_RS05115 20b0cb0155caf72e0c2ea5e49496089a 477 ProSitePatterns PS00455 Putative AMP-binding domain signature. 158 169 - T 11-11-2016 IPR020845 AMP-binding, conserved site vm_RS05115 20b0cb0155caf72e0c2ea5e49496089a 477 Gene3D G3DSA:3.40.50.980 165 303 3.5E-27 T 11-11-2016 vm_RS05115 20b0cb0155caf72e0c2ea5e49496089a 477 TIGRFAM TIGR01923 menE: O-succinylbenzoate-CoA ligase 33 461 1.6E-161 T 11-11-2016 IPR010192 2-succinylbenzoate--CoA ligase GO:0005524|GO:0008756|GO:0009234 KEGG: 00130+6.2.1.26|MetaCyc: PWY-5837 vm_RS05115 20b0cb0155caf72e0c2ea5e49496089a 477 SUPERFAMILY SSF56801 7 470 1.1E-89 T 11-11-2016 vm_RS04760 9e01e992a977221ae6de2f223ee23ff4 601 Gene3D G3DSA:3.40.720.10 259 533 2.8E-31 T 11-11-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 vm_RS04760 9e01e992a977221ae6de2f223ee23ff4 601 SUPERFAMILY SSF53649 259 581 2.47E-46 T 11-11-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 vm_RS04760 9e01e992a977221ae6de2f223ee23ff4 601 PIRSF PIRSF004950 6 599 1.2E-245 T 11-11-2016 IPR012159 Inner membrane protein YejM vm_RS04760 9e01e992a977221ae6de2f223ee23ff4 601 Pfam PF00884 Sulfatase 265 514 2.8E-21 T 11-11-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 vm_RS04760 9e01e992a977221ae6de2f223ee23ff4 601 Pfam PF11893 Domain of unknown function (DUF3413) 6 251 4.3E-101 T 11-11-2016 IPR024588 Inner membrane protein YejM, N-terminal vm_RS08475 cc083eacf113d3230e2aed7121984bea 182 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 28 2.6E-4 T 11-11-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal vm_RS08475 cc083eacf113d3230e2aed7121984bea 182 Gene3D G3DSA:3.30.1380.10 52 180 2.0E-33 T 11-11-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 vm_RS08475 cc083eacf113d3230e2aed7121984bea 182 Pfam PF05951 Bacterial protein of unknown function (DUF882) 30 179 1.7E-73 T 11-11-2016 IPR010275 Protein of unknown function DUF882 vm_RS08475 cc083eacf113d3230e2aed7121984bea 182 SUPERFAMILY SSF55166 52 179 4.19E-35 T 11-11-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 vm_RS02280 9cb55b0c30da5db32a788dba9dcd0a71 148 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 51 67 - T 11-11-2016 IPR002178 PTS EIIA type-2 domain vm_RS02280 9cb55b0c30da5db32a788dba9dcd0a71 148 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 2 146 3.1E-52 T 11-11-2016 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 vm_RS02280 9cb55b0c30da5db32a788dba9dcd0a71 148 Gene3D G3DSA:3.40.930.10 1 147 1.1E-44 T 11-11-2016 IPR002178 PTS EIIA type-2 domain vm_RS02280 9cb55b0c30da5db32a788dba9dcd0a71 148 SUPERFAMILY SSF55804 1 146 3.01E-40 T 11-11-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: R-HSA-425381 vm_RS02280 9cb55b0c30da5db32a788dba9dcd0a71 148 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 9 145 6.4E-37 T 11-11-2016 IPR002178 PTS EIIA type-2 domain vm_RS07790 d8f3f389a3162b0f5ab66e0a19942226 432 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 423 1.3E-93 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit vm_RS07790 d8f3f389a3162b0f5ab66e0a19942226 432 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 19 428 1.2E-95 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 vm_RS07790 d8f3f389a3162b0f5ab66e0a19942226 432 PIRSF PIRSF006066 2 432 4.5E-97 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 vm_RS14520 f9be5ae0ef17b04c1055ec463ac8ae47 162 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 162 85.753 T 11-11-2016 IPR020765 Uncharacterised protein family UPF0114, gammaproteobacteria GO:0005886 vm_RS14520 f9be5ae0ef17b04c1055ec463ac8ae47 162 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 1 160 2.7E-67 T 11-11-2016 IPR020761 Uncharacterised protein family UPF0114, bacteria vm_RS14520 f9be5ae0ef17b04c1055ec463ac8ae47 162 Pfam PF03350 Uncharacterized protein family, UPF0114 9 125 1.6E-33 T 11-11-2016 IPR005134 Uncharacterised protein family UPF0114 vm_RS02345 c0bb2bbb32497bcfed0f18498d40799e 212 Pfam PF05494 MlaC protein 34 198 5.0E-48 T 11-11-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC vm_RS02345 c0bb2bbb32497bcfed0f18498d40799e 212 Gene3D G3DSA:3.10.450.50 115 172 7.1E-19 T 11-11-2016 IPR032710 NTF2-like domain vm_RS02345 c0bb2bbb32497bcfed0f18498d40799e 212 Gene3D G3DSA:3.10.450.50 27 71 7.1E-19 T 11-11-2016 IPR032710 NTF2-like domain vm_RS02345 c0bb2bbb32497bcfed0f18498d40799e 212 PIRSF PIRSF004649 1 211 1.2E-56 T 11-11-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC vm_RS02345 c0bb2bbb32497bcfed0f18498d40799e 212 Gene3D G3DSA:1.10.10.640 173 202 1.1E-9 T 11-11-2016 IPR023094 Toluene tolerance protein, alpha-helical vm_RS02345 c0bb2bbb32497bcfed0f18498d40799e 212 Gene3D G3DSA:1.10.10.640 78 112 1.1E-9 T 11-11-2016 IPR023094 Toluene tolerance protein, alpha-helical vm_RS05550 75225e2e5161a0ca696a8cd87503c0cb 947 Gene3D G3DSA:3.40.50.300 536 842 5.1E-92 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05550 75225e2e5161a0ca696a8cd87503c0cb 947 Pfam PF01580 FtsK/SpoIIIE family 562 775 6.8E-71 T 11-11-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 vm_RS05550 75225e2e5161a0ca696a8cd87503c0cb 947 Pfam PF09397 Ftsk gamma domain 881 941 1.2E-25 T 11-11-2016 IPR018541 FtsK gamma domain vm_RS05550 75225e2e5161a0ca696a8cd87503c0cb 947 SUPERFAMILY SSF46785 879 942 7.48E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05550 75225e2e5161a0ca696a8cd87503c0cb 947 SUPERFAMILY SSF52540 536 848 5.31E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05550 75225e2e5161a0ca696a8cd87503c0cb 947 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 28 199 1.3E-41 T 11-11-2016 IPR025199 DNA translocase FtsK, 4TM region vm_RS05550 75225e2e5161a0ca696a8cd87503c0cb 947 SMART SM00843 879 944 5.3E-39 T 11-11-2016 IPR018541 FtsK gamma domain vm_RS02025 ae1a8c36dede30f90c9f333e24a65300 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 31.287 T 11-11-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02025 ae1a8c36dede30f90c9f333e24a65300 130 Pfam PF00410 Ribosomal protein S8 5 129 1.7E-47 T 11-11-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02025 ae1a8c36dede30f90c9f333e24a65300 130 Gene3D G3DSA:3.30.1490.10 74 129 3.8E-28 T 11-11-2016 vm_RS02025 ae1a8c36dede30f90c9f333e24a65300 130 Gene3D G3DSA:3.30.1370.30 2 71 9.6E-26 T 11-11-2016 vm_RS02025 ae1a8c36dede30f90c9f333e24a65300 130 SUPERFAMILY SSF56047 2 129 2.35E-44 T 11-11-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS02025 ae1a8c36dede30f90c9f333e24a65300 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 11-11-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-975956|Reactome: R-HSA-975957 vm_RS08030 791cb11478c8ade03212e5e4c77ba940 401 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 91 155 3.6E-17 T 11-11-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 vm_RS08030 791cb11478c8ade03212e5e4c77ba940 401 SUPERFAMILY SSF161098 193 382 1.31E-24 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS08030 791cb11478c8ade03212e5e4c77ba940 401 SUPERFAMILY SSF161098 91 159 2.62E-12 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS08030 791cb11478c8ade03212e5e4c77ba940 401 Gene3D G3DSA:1.10.3720.10 237 396 6.3E-46 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS08030 791cb11478c8ade03212e5e4c77ba940 401 Gene3D G3DSA:1.10.3720.10 90 159 6.3E-46 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS08030 791cb11478c8ade03212e5e4c77ba940 401 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 111 396 1.2E-12 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS08170 83f8e90e305a40aa685c5555d481f890 509 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 18 444 1.7E-140 T 11-11-2016 IPR002823 Protein of unknown function DUF112, transmembrane vm_RS06540 ecac840f38c9d72ed323a09ecd5b1600 295 SUPERFAMILY SSF161098 89 276 1.01E-23 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS06540 ecac840f38c9d72ed323a09ecd5b1600 295 Gene3D G3DSA:1.10.3720.10 87 290 5.8E-22 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS06540 ecac840f38c9d72ed323a09ecd5b1600 295 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 294 2.0E-22 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS06540 ecac840f38c9d72ed323a09ecd5b1600 295 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 14 65 4.3E-15 T 11-11-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain vm_RS03845 0e9ce3134ba1b00778b116340a4a68cd 141 SUPERFAMILY SSF140566 1 113 1.03E-22 T 11-11-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 vm_RS03845 0e9ce3134ba1b00778b116340a4a68cd 141 Pfam PF05130 FlgN protein 2 131 1.3E-26 T 11-11-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 vm_RS03845 0e9ce3134ba1b00778b116340a4a68cd 141 Gene3D G3DSA:1.20.58.300 1 113 1.8E-24 T 11-11-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 vm_RS10520 43792db1b90f619926feb59052b723fd 184 Gene3D G3DSA:2.160.10.10 50 166 2.8E-28 T 11-11-2016 vm_RS10520 43792db1b90f619926feb59052b723fd 184 SUPERFAMILY SSF51161 51 167 1.52E-32 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS10520 43792db1b90f619926feb59052b723fd 184 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 123 151 - T 11-11-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 vm_RS10520 43792db1b90f619926feb59052b723fd 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 115 148 6.0E-8 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS08165 352c5f9f7ada716a566c48454628f265 165 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 21 156 1.3E-15 T 11-11-2016 IPR009936 Protein of unknown function DUF1468 vm_RS05880 2d52ebd147d41460887fedf07dfa2e52 356 TIGRFAM TIGR02794 tolA_full: protein TolA 13 355 8.2E-90 T 11-11-2016 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 vm_RS05880 2d52ebd147d41460887fedf07dfa2e52 356 Pfam PF06519 TolA C-terminal 254 353 5.6E-34 T 11-11-2016 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 vm_RS05880 2d52ebd147d41460887fedf07dfa2e52 356 Gene3D G3DSA:3.30.1150.10 252 355 1.7E-22 T 11-11-2016 vm_RS05880 2d52ebd147d41460887fedf07dfa2e52 356 SUPERFAMILY SSF74653 263 356 1.79E-14 T 11-11-2016 vm_RS02855 9d5d1657a3253462601e88e644ffacd0 408 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 168 196 - T 11-11-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 vm_RS02855 9d5d1657a3253462601e88e644ffacd0 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 372 386 5.6E-20 T 11-11-2016 IPR003004 GspF/PilC family vm_RS02855 9d5d1657a3253462601e88e644ffacd0 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 168 196 5.6E-20 T 11-11-2016 IPR003004 GspF/PilC family vm_RS02855 9d5d1657a3253462601e88e644ffacd0 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 388 407 5.6E-20 T 11-11-2016 IPR003004 GspF/PilC family vm_RS02855 9d5d1657a3253462601e88e644ffacd0 408 PRINTS PR00812 Bacterial general secretion pathway protein F signature 69 81 5.6E-20 T 11-11-2016 IPR003004 GspF/PilC family vm_RS02855 9d5d1657a3253462601e88e644ffacd0 408 Pfam PF00482 Type II secretion system (T2SS), protein F 277 399 1.5E-27 T 11-11-2016 IPR018076 Type II secretion system F domain vm_RS02855 9d5d1657a3253462601e88e644ffacd0 408 Pfam PF00482 Type II secretion system (T2SS), protein F 74 196 9.8E-32 T 11-11-2016 IPR018076 Type II secretion system F domain vm_RS09040 be176d2c56cc06993e434fa8ac5c20ee 245 SUPERFAMILY SSF50630 107 241 7.88E-42 T 11-11-2016 IPR021109 Aspartic peptidase domain vm_RS09040 be176d2c56cc06993e434fa8ac5c20ee 245 Gene3D G3DSA:2.40.70.10 106 235 1.2E-48 T 11-11-2016 IPR021109 Aspartic peptidase domain vm_RS09040 be176d2c56cc06993e434fa8ac5c20ee 245 Pfam PF05618 Putative ATP-dependant zinc protease 107 243 1.5E-50 T 11-11-2016 vm_RS06875 43fab52d27074ea9f1dabce1c85258ef 77 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 11-11-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 vm_RS06875 43fab52d27074ea9f1dabce1c85258ef 77 Gene3D G3DSA:3.40.30.10 3 74 1.4E-18 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS06875 43fab52d27074ea9f1dabce1c85258ef 77 Pfam PF00462 Glutaredoxin 4 60 1.2E-12 T 11-11-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 vm_RS06875 43fab52d27074ea9f1dabce1c85258ef 77 SUPERFAMILY SSF52833 3 68 1.2E-13 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS08560 fb3fc33a73d60990050b1a903dc66d73 318 TIGRFAM TIGR03148 cyt_nit_nrfD: cytochrome c nitrite reductase, NrfD subunit 7 318 5.2E-143 T 11-11-2016 IPR017566 NrfD vm_RS08560 fb3fc33a73d60990050b1a903dc66d73 318 Pfam PF03916 Polysulphide reductase, NrfD 7 317 3.3E-79 T 11-11-2016 IPR005614 NrfD family vm_RS07350 d7effaa5acb51b6353091ec9f61cbe26 192 Pfam PF11748 Protein of unknown function (DUF3306) 7 117 3.2E-20 T 11-11-2016 IPR021735 Protein of unknown function DUF3306 vm_RS11365 d2fa560848143091ce2b2b299500b076 386 SUPERFAMILY SSF50998 35 376 2.35E-80 T 11-11-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily vm_RS11365 d2fa560848143091ce2b2b299500b076 386 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 7 382 3.6E-136 T 11-11-2016 IPR017687 Outer membrane protein assembly factor BamB vm_RS11365 d2fa560848143091ce2b2b299500b076 386 Gene3D G3DSA:2.140.10.10 5 379 4.6E-70 T 11-11-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain vm_RS11365 d2fa560848143091ce2b2b299500b076 386 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 3 384 41.174 T 11-11-2016 IPR017687 Outer membrane protein assembly factor BamB vm_RS11365 d2fa560848143091ce2b2b299500b076 386 SMART SM00564 321 353 140.0 T 11-11-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat vm_RS11365 d2fa560848143091ce2b2b299500b076 386 SMART SM00564 243 274 9.1 T 11-11-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat vm_RS11365 d2fa560848143091ce2b2b299500b076 386 SMART SM00564 192 223 510.0 T 11-11-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat vm_RS11365 d2fa560848143091ce2b2b299500b076 386 SMART SM00564 106 138 12.0 T 11-11-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat vm_RS11365 d2fa560848143091ce2b2b299500b076 386 SMART SM00564 147 178 3.1 T 11-11-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat vm_RS11365 d2fa560848143091ce2b2b299500b076 386 SMART SM00564 63 94 3.2E-5 T 11-11-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat vm_RS11365 d2fa560848143091ce2b2b299500b076 386 SMART SM00564 280 312 25.0 T 11-11-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat vm_RS11365 d2fa560848143091ce2b2b299500b076 386 Pfam PF13360 PQQ-like domain 76 311 2.3E-53 T 11-11-2016 IPR002372 Pyrrolo-quinoline quinone repeat vm_RS11390 4df0354a91db94531673a3dbf85df26c 373 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 5 353 71.719 T 11-11-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS11390 4df0354a91db94531673a3dbf85df26c 373 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 3 358 2.4E-159 T 11-11-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS11390 4df0354a91db94531673a3dbf85df26c 373 Gene3D G3DSA:3.20.20.70 106 327 1.5E-15 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS11390 4df0354a91db94531673a3dbf85df26c 373 PIRSF PIRSF006004 3 367 6.6E-145 T 11-11-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 vm_RS11390 4df0354a91db94531673a3dbf85df26c 373 Pfam PF04055 Radical SAM superfamily 109 283 7.1E-15 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS11390 4df0354a91db94531673a3dbf85df26c 373 SUPERFAMILY SSF102114 105 332 2.22E-13 T 11-11-2016 vm_RS05875 a01cf7138ccb00c8ec14cf22f840cdb8 147 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 146 8.8E-26 T 11-11-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 vm_RS00690 19bc18d7077578d049d29c27e1991938 327 PIRSF PIRSF003097 28 323 3.1E-63 T 11-11-2016 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 vm_RS00690 19bc18d7077578d049d29c27e1991938 327 Pfam PF02687 FtsX-like permease family 205 321 2.2E-10 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 vm_RS05365 c5dc06234c5a7419e4b4fda84f05faa4 389 SUPERFAMILY SSF81901 39 276 1.8E-20 T 11-11-2016 vm_RS05365 c5dc06234c5a7419e4b4fda84f05faa4 389 Pfam PF13176 Tetratricopeptide repeat 71 94 0.031 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS05365 c5dc06234c5a7419e4b4fda84f05faa4 389 SMART SM00028 214 247 0.71 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS05365 c5dc06234c5a7419e4b4fda84f05faa4 389 SMART SM00028 249 282 180.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS05365 c5dc06234c5a7419e4b4fda84f05faa4 389 SMART SM00028 180 213 0.087 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS05365 c5dc06234c5a7419e4b4fda84f05faa4 389 SMART SM00028 69 102 81.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS05365 c5dc06234c5a7419e4b4fda84f05faa4 389 SMART SM00028 141 174 120.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS05365 c5dc06234c5a7419e4b4fda84f05faa4 389 Hamap MF_00994 Lipopolysaccharide assembly protein B [lapB]. 4 387 37.459 T 11-11-2016 IPR030865 Lipopolysaccharide assembly protein B GO:0008653 vm_RS05365 c5dc06234c5a7419e4b4fda84f05faa4 389 Gene3D G3DSA:1.25.40.10 110 229 8.5E-21 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS05365 c5dc06234c5a7419e4b4fda84f05faa4 389 Gene3D G3DSA:1.25.40.10 45 95 1.4E-4 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS05365 c5dc06234c5a7419e4b4fda84f05faa4 389 Pfam PF13181 Tetratricopeptide repeat 180 213 0.0095 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS05365 c5dc06234c5a7419e4b4fda84f05faa4 389 Gene3D G3DSA:1.25.40.10 230 348 2.8E-7 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS14130 ce558d6a04e203c5705c6ff494ec7e19 396 SUPERFAMILY SSF103473 9 374 2.09E-37 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS14130 ce558d6a04e203c5705c6ff494ec7e19 396 PIRSF PIRSF004925 3 387 7.7E-102 T 11-11-2016 IPR026032 Probable 3-phenylpropionic acid transporter vm_RS14130 ce558d6a04e203c5705c6ff494ec7e19 396 Gene3D G3DSA:1.20.1250.20 199 380 1.5E-18 T 11-11-2016 vm_RS14130 ce558d6a04e203c5705c6ff494ec7e19 396 Pfam PF12832 MFS_1 like family 13 361 1.6E-41 T 11-11-2016 IPR024989 Major facilitator superfamily associated domain vm_RS14130 ce558d6a04e203c5705c6ff494ec7e19 396 Gene3D G3DSA:1.20.1250.20 14 185 4.3E-15 T 11-11-2016 vm_RS05065 a384546dba9e4290cdce2207abe6f43d 183 TIGRFAM TIGR03902 rhom_GG_sort: rhombosortase 24 171 2.1E-49 T 11-11-2016 IPR023826 Rhomboid-like serine protease, proteobacteria vm_RS05065 a384546dba9e4290cdce2207abe6f43d 183 Gene3D G3DSA:1.20.1540.10 3 171 4.9E-19 T 11-11-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 vm_RS05065 a384546dba9e4290cdce2207abe6f43d 183 SUPERFAMILY SSF144091 3 172 4.05E-28 T 11-11-2016 vm_RS05065 a384546dba9e4290cdce2207abe6f43d 183 Pfam PF01694 Rhomboid family 33 172 1.3E-13 T 11-11-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 vm_RS05460 cce50afb51a9db4db93cd2a4ab6dca69 278 PRINTS PR01021 OMPA domain signature 159 181 5.7E-8 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS05460 cce50afb51a9db4db93cd2a4ab6dca69 278 PRINTS PR01021 OMPA domain signature 189 204 5.7E-8 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS05460 cce50afb51a9db4db93cd2a4ab6dca69 278 PRINTS PR01021 OMPA domain signature 204 220 5.7E-8 T 11-11-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 vm_RS05460 cce50afb51a9db4db93cd2a4ab6dca69 278 SUPERFAMILY SSF103088 147 259 4.84E-26 T 11-11-2016 IPR006665 OmpA-like domain vm_RS05460 cce50afb51a9db4db93cd2a4ab6dca69 278 Pfam PF00691 OmpA family 159 253 4.2E-19 T 11-11-2016 IPR006665 OmpA-like domain vm_RS05460 cce50afb51a9db4db93cd2a4ab6dca69 278 Gene3D G3DSA:3.30.1330.60 153 259 4.1E-24 T 11-11-2016 IPR006665 OmpA-like domain vm_RS03065 b54649f336fd97c5fb9862e180c757b1 121 PIRSF PIRSF026426 1 119 8.4E-44 T 11-11-2016 IPR010865 Protein of unknown function DUF1499 vm_RS03065 b54649f336fd97c5fb9862e180c757b1 121 Pfam PF07386 Protein of unknown function (DUF1499) 8 112 3.9E-23 T 11-11-2016 IPR010865 Protein of unknown function DUF1499 vm_RS10225 b80f6782363a7761ec39445a831d3771 97 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 6 77 1.1E-25 T 11-11-2016 IPR011893 Selenoprotein, Rdx type vm_RS10225 b80f6782363a7761ec39445a831d3771 97 Pfam PF10262 Rdx family 6 78 1.5E-32 T 11-11-2016 IPR011893 Selenoprotein, Rdx type vm_RS10225 b80f6782363a7761ec39445a831d3771 97 SUPERFAMILY SSF52833 5 87 1.52E-29 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS10225 b80f6782363a7761ec39445a831d3771 97 Gene3D G3DSA:3.40.30.10 2 94 1.2E-44 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS03445 800a6dd5eae73c15a326882788c4f25f 415 Pfam PF03116 NQR2, RnfD, RnfE family 41 406 1.1E-107 T 11-11-2016 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 vm_RS03445 800a6dd5eae73c15a326882788c4f25f 415 PIRSF PIRSF016055 1 414 7.6E-201 T 11-11-2016 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0022904|GO:0055114 vm_RS03445 800a6dd5eae73c15a326882788c4f25f 415 Hamap MF_00426 Na(+)-translocating NADH-quinone reductase subunit B [nqrB]. 2 412 36.502 T 11-11-2016 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0022904|GO:0055114 vm_RS03445 800a6dd5eae73c15a326882788c4f25f 415 TIGRFAM TIGR01937 nqrB: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit 3 408 1.4E-200 T 11-11-2016 IPR010966 Na(+)-translocating NADH-quinone reductase subunit B GO:0009276|GO:0010181|GO:0016021|GO:0016655|GO:0022904|GO:0055114 vm_RS09160 1dc0e09c9c7adc0994447364448a2264 241 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 70 240 4.5E-59 T 11-11-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 vm_RS09160 1dc0e09c9c7adc0994447364448a2264 241 Pfam PF00849 RNA pseudouridylate synthase 66 210 8.5E-15 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS09160 1dc0e09c9c7adc0994447364448a2264 241 SUPERFAMILY SSF55120 63 240 1.54E-45 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS09160 1dc0e09c9c7adc0994447364448a2264 241 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 101 115 - T 11-11-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 vm_RS10220 82f935819a4da75b2514b1d97b0e9595 173 ProDom PD016359 TRANSMEMBRANE TOXS REGULATORY MEMBRANE PERIPLASMIC 3 172 6.0E-80 T 11-11-2016 vm_RS19855 0c5f401a0bd37d9b2feb4e403ffd5402 123 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 1 123 2.1E-53 T 11-11-2016 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 vm_RS19855 0c5f401a0bd37d9b2feb4e403ffd5402 123 Gene3D G3DSA:2.160.20.70 34 123 1.3E-35 T 11-11-2016 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 vm_RS19855 0c5f401a0bd37d9b2feb4e403ffd5402 123 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 1 35 5.5E-7 T 11-11-2016 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 vm_RS19855 0c5f401a0bd37d9b2feb4e403ffd5402 123 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 48 122 1.1E-30 T 11-11-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 vm_RS19855 0c5f401a0bd37d9b2feb4e403ffd5402 123 SUPERFAMILY SSF63848 46 123 1.18E-28 T 11-11-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 vm_RS13295 6c7d0474407316ce17f8cb4ef9bd5f6a 130 Gene3D G3DSA:3.30.1330.40 17 126 9.7E-30 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like vm_RS13295 6c7d0474407316ce17f8cb4ef9bd5f6a 130 SUPERFAMILY SSF55298 18 126 1.12E-30 T 11-11-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like vm_RS13295 6c7d0474407316ce17f8cb4ef9bd5f6a 130 Pfam PF01042 Endoribonuclease L-PSP 20 123 4.5E-22 T 11-11-2016 IPR006175 YjgF/YER057c/UK114 family vm_RS08115 60b7e7d880e799c717bbb8c43ce0d221 482 Gene3D G3DSA:3.90.79.10 36 97 7.3E-14 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS08115 60b7e7d880e799c717bbb8c43ce0d221 482 Gene3D G3DSA:1.20.144.10 154 356 6.0E-4 T 11-11-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase vm_RS08115 60b7e7d880e799c717bbb8c43ce0d221 482 Pfam PF00293 NUDIX domain 37 116 4.4E-10 T 11-11-2016 IPR000086 NUDIX hydrolase domain GO:0016787 vm_RS08115 60b7e7d880e799c717bbb8c43ce0d221 482 SUPERFAMILY SSF55811 36 148 7.31E-16 T 11-11-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 vm_RS11580 35c918f543d32de99c24ba0e65f5e716 84 SUPERFAMILY SSF54862 5 72 2.69E-17 T 11-11-2016 vm_RS11580 35c918f543d32de99c24ba0e65f5e716 84 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 11-11-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site vm_RS11580 35c918f543d32de99c24ba0e65f5e716 84 Pfam PF12838 4Fe-4S dicluster domain 8 55 1.6E-6 T 11-11-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain vm_RS11580 35c918f543d32de99c24ba0e65f5e716 84 Gene3D G3DSA:3.30.70.20 5 73 4.8E-17 T 11-11-2016 vm_RS15720 6e343c60abaca7d69fa5ff7fa828a557 298 Pfam PF01295 Adenylate cyclase, class-I 106 298 5.5E-90 T 11-11-2016 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 vm_RS15720 6e343c60abaca7d69fa5ff7fa828a557 298 Pfam PF12633 Adenylate cyclase NT domain 2 78 5.6E-32 T 11-11-2016 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 vm_RS04505 137909ff34752fd4f508fe0a2664babe 936 Gene3D G3DSA:3.40.50.970 593 790 2.5E-24 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS04505 137909ff34752fd4f508fe0a2664babe 936 SMART SM00861 594 787 1.3E-62 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain vm_RS04505 137909ff34752fd4f508fe0a2664babe 936 Pfam PF02779 Transketolase, pyrimidine binding domain 593 788 7.7E-66 T 11-11-2016 IPR005475 Transketolase-like, pyrimidine-binding domain vm_RS04505 137909ff34752fd4f508fe0a2664babe 936 Pfam PF00676 Dehydrogenase E1 component 222 517 7.8E-49 T 11-11-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 vm_RS04505 137909ff34752fd4f508fe0a2664babe 936 PIRSF PIRSF000157 1 935 0.0 T 11-11-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 vm_RS04505 137909ff34752fd4f508fe0a2664babe 936 SUPERFAMILY SSF52518 122 532 8.1E-87 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS04505 137909ff34752fd4f508fe0a2664babe 936 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 792 933 1.3E-53 T 11-11-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 vm_RS04505 137909ff34752fd4f508fe0a2664babe 936 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 933 0.0 T 11-11-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 vm_RS04505 137909ff34752fd4f508fe0a2664babe 936 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 50 9.6E-14 T 11-11-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 vm_RS04505 137909ff34752fd4f508fe0a2664babe 936 Gene3D G3DSA:3.40.50.970 163 556 4.8E-79 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS04505 137909ff34752fd4f508fe0a2664babe 936 SUPERFAMILY SSF52518 577 794 2.02E-53 T 11-11-2016 IPR029061 Thiamin diphosphate-binding fold vm_RS05385 77c42eb6d6e00c8f8cf04c27e6747b77 213 Pfam PF02397 Bacterial sugar transferase 15 208 1.1E-51 T 11-11-2016 IPR003362 Bacterial sugar transferase vm_RS04910 ad4abc93aa5d057ab8aa9964faa06992 486 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 27 41 - T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS04910 ad4abc93aa5d057ab8aa9964faa06992 486 SUPERFAMILY SSF161070 3 475 1.02E-148 T 11-11-2016 vm_RS04910 ad4abc93aa5d057ab8aa9964faa06992 486 Pfam PF00209 Sodium:neurotransmitter symporter family 121 472 8.6E-79 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS04910 ad4abc93aa5d057ab8aa9964faa06992 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 11 32 5.8E-36 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS04910 ad4abc93aa5d057ab8aa9964faa06992 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 40 59 5.8E-36 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS04910 ad4abc93aa5d057ab8aa9964faa06992 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 84 110 5.8E-36 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS04910 ad4abc93aa5d057ab8aa9964faa06992 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 388 408 5.8E-36 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS04910 ad4abc93aa5d057ab8aa9964faa06992 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 257 277 5.8E-36 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS04910 ad4abc93aa5d057ab8aa9964faa06992 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 311 330 5.8E-36 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS04910 ad4abc93aa5d057ab8aa9964faa06992 486 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 428 448 5.8E-36 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS11195 4c04b3a0705d01f133c5e5e67d10be0f 227 PIRSF PIRSF028137 1 227 1.6E-100 T 11-11-2016 IPR016870 Uncharacterised conserved protein UCP028137, membrane vm_RS03340 3b3ff7f298d70c842c719dbcbbe9afa7 706 Gene3D G3DSA:3.40.50.300 625 684 6.2E-13 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03340 3b3ff7f298d70c842c719dbcbbe9afa7 706 SUPERFAMILY SSF52540 531 704 8.5E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03340 3b3ff7f298d70c842c719dbcbbe9afa7 706 SUPERFAMILY SSF52540 433 464 8.5E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03340 3b3ff7f298d70c842c719dbcbbe9afa7 706 SUPERFAMILY SSF52540 366 406 8.5E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03340 3b3ff7f298d70c842c719dbcbbe9afa7 706 Gene3D G3DSA:3.40.50.300 225 403 1.7E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03340 3b3ff7f298d70c842c719dbcbbe9afa7 706 Gene3D G3DSA:3.40.50.300 436 463 1.7E-49 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03340 3b3ff7f298d70c842c719dbcbbe9afa7 706 Pfam PF13538 UvrD-like helicase C-terminal domain 633 678 2.1E-13 T 11-11-2016 IPR027785 UvrD-like helicase C-terminal domain vm_RS03340 3b3ff7f298d70c842c719dbcbbe9afa7 706 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 10 704 2.2E-253 T 11-11-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 vm_RS03340 3b3ff7f298d70c842c719dbcbbe9afa7 706 Pfam PF13604 AAA domain 238 400 1.6E-30 T 11-11-2016 vm_RS03340 3b3ff7f298d70c842c719dbcbbe9afa7 706 SUPERFAMILY SSF52540 229 446 3.7E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03340 3b3ff7f298d70c842c719dbcbbe9afa7 706 SUPERFAMILY SSF52540 16 163 3.7E-48 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS03340 3b3ff7f298d70c842c719dbcbbe9afa7 706 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 18 702 49.417 T 11-11-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 vm_RS07700 340ae65eb5dd1a2764c7f18cda21c87e 709 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 239 503 1.4E-18 T 11-11-2016 IPR018712 Domain of unknown function DUF2235 vm_RS04835 244c8ebef1997a724db08427d5b527c4 174 Pfam PF02620 Uncharacterized ACR, COG1399 62 173 5.4E-17 T 11-11-2016 IPR003772 Protein of unknown function DUF177 vm_RS12900 db703fa3bcdb52f1f43b6bb55f30f00e 60 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 29 49 - T 11-11-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 vm_RS19035 dc55b8f2037c01d4b2910c2c35e1b8cb 133 Pfam PF02108 Flagellar assembly protein FliH 47 132 1.3E-20 T 11-11-2016 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE vm_RS19035 dc55b8f2037c01d4b2910c2c35e1b8cb 133 PRINTS PR01003 Flagellar assembly protein FliH signature 69 86 2.4E-10 T 11-11-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 vm_RS19035 dc55b8f2037c01d4b2910c2c35e1b8cb 133 PRINTS PR01003 Flagellar assembly protein FliH signature 49 68 2.4E-10 T 11-11-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 vm_RS19035 dc55b8f2037c01d4b2910c2c35e1b8cb 133 PRINTS PR01003 Flagellar assembly protein FliH signature 110 133 2.4E-10 T 11-11-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 vm_RS19035 dc55b8f2037c01d4b2910c2c35e1b8cb 133 PRINTS PR01003 Flagellar assembly protein FliH signature 7 29 2.4E-10 T 11-11-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 vm_RS19035 dc55b8f2037c01d4b2910c2c35e1b8cb 133 PRINTS PR01003 Flagellar assembly protein FliH signature 30 48 2.4E-10 T 11-11-2016 IPR000563 Flagellar assembly protein FliH GO:0003774|GO:0009288|GO:0071973 vm_RS05675 9757db8c0a2a3df08f38b9b8ae709502 251 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 248 46.83 T 11-11-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 vm_RS05675 9757db8c0a2a3df08f38b9b8ae709502 251 Gene3D G3DSA:3.90.550.10 1 248 6.7E-89 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS05675 9757db8c0a2a3df08f38b9b8ae709502 251 SUPERFAMILY SSF53448 3 246 3.38E-66 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS05675 9757db8c0a2a3df08f38b9b8ae709502 251 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 1 241 2.2E-116 T 11-11-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 vm_RS05675 9757db8c0a2a3df08f38b9b8ae709502 251 Pfam PF02348 Cytidylyltransferase 5 221 3.2E-65 T 11-11-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 vm_RS01990 ec8bc877369c3db2337dffb6a950aede 136 Gene3D G3DSA:3.90.1170.10 22 134 1.7E-53 T 11-11-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 vm_RS01990 ec8bc877369c3db2337dffb6a950aede 136 Pfam PF00252 Ribosomal protein L16p/L10e 4 131 3.3E-47 T 11-11-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 vm_RS01990 ec8bc877369c3db2337dffb6a950aede 136 PRINTS PR00060 Ribosomal protein L16 signature 87 116 4.5E-40 T 11-11-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS01990 ec8bc877369c3db2337dffb6a950aede 136 PRINTS PR00060 Ribosomal protein L16 signature 23 35 4.5E-40 T 11-11-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS01990 ec8bc877369c3db2337dffb6a950aede 136 PRINTS PR00060 Ribosomal protein L16 signature 57 86 4.5E-40 T 11-11-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS01990 ec8bc877369c3db2337dffb6a950aede 136 PRINTS PR00060 Ribosomal protein L16 signature 41 52 4.5E-40 T 11-11-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS01990 ec8bc877369c3db2337dffb6a950aede 136 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 58 69 - T 11-11-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01990 ec8bc877369c3db2337dffb6a950aede 136 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 133 37.369 T 11-11-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS01990 ec8bc877369c3db2337dffb6a950aede 136 SUPERFAMILY SSF54686 3 133 7.33E-53 T 11-11-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 vm_RS01990 ec8bc877369c3db2337dffb6a950aede 136 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 125 4.5E-57 T 11-11-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS12580 feb7c8d3afe6a83c395c89d46eaba1d3 200 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 2 194 7.7E-75 T 11-11-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 vm_RS12580 feb7c8d3afe6a83c395c89d46eaba1d3 200 Pfam PF02660 Glycerol-3-phosphate acyltransferase 11 184 3.3E-51 T 11-11-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 vm_RS12580 feb7c8d3afe6a83c395c89d46eaba1d3 200 SMART SM01207 10 185 1.2E-85 T 11-11-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 vm_RS12580 feb7c8d3afe6a83c395c89d46eaba1d3 200 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 7 193 19.008 T 11-11-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 vm_RS12495 cc21aa2c8f1457c70c0758212913c530 287 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 15 274 3.5E-130 T 11-11-2016 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 vm_RS12495 cc21aa2c8f1457c70c0758212913c530 287 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 14 272 7.3E-101 T 11-11-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 vm_RS12495 cc21aa2c8f1457c70c0758212913c530 287 Gene3D G3DSA:1.10.3720.10 16 274 3.0E-50 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12495 cc21aa2c8f1457c70c0758212913c530 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 275 5.9E-15 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS12495 cc21aa2c8f1457c70c0758212913c530 287 SUPERFAMILY SSF161098 13 265 1.07E-56 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS11595 a8198502d3ac66f25716a9d79290492f 107 SUPERFAMILY SSF55331 1 107 6.96E-39 T 11-11-2016 IPR014347 Tautomerase/MIF superfamily vm_RS11595 a8198502d3ac66f25716a9d79290492f 107 Gene3D G3DSA:3.30.429.10 1 107 9.9E-43 T 11-11-2016 vm_RS11595 a8198502d3ac66f25716a9d79290492f 107 Pfam PF08921 Domain of unknown function (DUF1904) 1 106 3.6E-36 T 11-11-2016 IPR015017 Protein of unknown function DUF1904 vm_RS00470 b8ca6d1ad5817e9a04f03542a474d266 278 Pfam PF01694 Rhomboid family 133 273 3.7E-34 T 11-11-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 vm_RS00470 b8ca6d1ad5817e9a04f03542a474d266 278 Gene3D G3DSA:1.20.1540.10 99 269 1.1E-36 T 11-11-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 vm_RS00470 b8ca6d1ad5817e9a04f03542a474d266 278 Pfam PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease 1 86 3.3E-31 T 11-11-2016 IPR022732 Peptidase S54, GlpG peptidase, N-terminal GO:0004252|GO:0016021 vm_RS00470 b8ca6d1ad5817e9a04f03542a474d266 278 TIGRFAM TIGR04239 rhombo_GlpG: rhomboid family protease GlpG 4 272 5.9E-116 T 11-11-2016 IPR023662 Rhomboid protease GlpG GO:0004252|GO:0006508|GO:0016021 vm_RS00470 b8ca6d1ad5817e9a04f03542a474d266 278 SUPERFAMILY SSF144091 97 273 1.83E-43 T 11-11-2016 vm_RS00215 b34f9ba53cf5172522c343ab0757c5bb 185 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 1 183 39.892 T 11-11-2016 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 vm_RS00215 b34f9ba53cf5172522c343ab0757c5bb 185 SUPERFAMILY SSF55821 2 178 1.07E-54 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain vm_RS00215 b34f9ba53cf5172522c343ab0757c5bb 185 Gene3D G3DSA:3.90.870.10 2 185 6.8E-58 T 11-11-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain vm_RS00215 b34f9ba53cf5172522c343ab0757c5bb 185 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 3 185 4.5E-39 T 11-11-2016 IPR006070 YrdC-like domain GO:0003725 vm_RS00215 b34f9ba53cf5172522c343ab0757c5bb 185 Pfam PF01300 Telomere recombination 10 185 4.3E-47 T 11-11-2016 IPR006070 YrdC-like domain GO:0003725 vm_RS02175 b47ccc121a28026cb558a918d53dafb3 81 Pfam PF10795 Protein of unknown function (DUF2607) 1 79 1.8E-36 T 11-11-2016 IPR019731 Protein of unknown function DUF2607 vm_RS00405 ecda822baffe765a494c5a72bb99d5bc 201 Pfam PF02036 SCP-2 sterol transfer family 15 111 4.0E-20 T 11-11-2016 IPR003033 SCP2 sterol-binding domain vm_RS00405 ecda822baffe765a494c5a72bb99d5bc 201 Gene3D G3DSA:3.30.1050.10 24 115 1.1E-5 T 11-11-2016 IPR003033 SCP2 sterol-binding domain vm_RS00405 ecda822baffe765a494c5a72bb99d5bc 201 SUPERFAMILY SSF55718 15 117 1.97E-9 T 11-11-2016 IPR003033 SCP2 sterol-binding domain vm_RS14495 cd964cb2b945fc59f92e80f999451947 315 PIRSF PIRSF026649 7 311 5.1E-79 T 11-11-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 vm_RS14495 cd964cb2b945fc59f92e80f999451947 315 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 9 308 6.7E-125 T 11-11-2016 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 vm_RS14495 cd964cb2b945fc59f92e80f999451947 315 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 10 302 2.8E-69 T 11-11-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 vm_RS14495 cd964cb2b945fc59f92e80f999451947 315 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 8 314 44.111 T 11-11-2016 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24 vm_RS02170 4b4fca4ad5b5e481b1cad83ff1398973 227 Pfam PF10986 Protein of unknown function (DUF2796) 33 148 1.4E-27 T 11-11-2016 IPR021253 Protein of unknown function DUF2796 vm_RS02170 4b4fca4ad5b5e481b1cad83ff1398973 227 Pfam PF10986 Protein of unknown function (DUF2796) 142 223 5.0E-19 T 11-11-2016 IPR021253 Protein of unknown function DUF2796 vm_RS13485 995f9ad4700483707a82a8a934693ace 184 SUPERFAMILY SSF54523 8 105 3.61E-13 T 11-11-2016 vm_RS13485 995f9ad4700483707a82a8a934693ace 184 Pfam PF13633 Prokaryotic N-terminal methylation site 5 29 6.4E-7 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS13485 995f9ad4700483707a82a8a934693ace 184 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 28 5.3E-7 T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS13485 995f9ad4700483707a82a8a934693ace 184 Gene3D G3DSA:3.30.700.10 8 56 2.5E-6 T 11-11-2016 vm_RS13485 995f9ad4700483707a82a8a934693ace 184 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 11-11-2016 IPR012902 Prokaryotic N-terminal methylation site vm_RS06425 e42784b8b4f41b4353feb7731e2be735 132 Pfam PF16549 Type II secretion system (T2SS) pilotin, S protein 16 130 2.9E-46 T 11-11-2016 IPR016502 Type II secretion system (T2SS) pilotin, S protein vm_RS06425 e42784b8b4f41b4353feb7731e2be735 132 PIRSF PIRSF007010 1 132 1.7E-58 T 11-11-2016 IPR016502 Type II secretion system (T2SS) pilotin, S protein vm_RS06600 864718f7338b763aafbce73966a177e3 233 SUPERFAMILY SSF55120 2 191 1.2E-45 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS06600 864718f7338b763aafbce73966a177e3 233 Pfam PF00849 RNA pseudouridylate synthase 10 153 1.3E-25 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS06600 864718f7338b763aafbce73966a177e3 233 TIGRFAM TIGR01621 RluA-like: pseudouridine synthase Rlu family protein, TIGR01621 1 220 2.3E-115 T 11-11-2016 IPR006508 Pseudouridine synthase, RluA-like vm_RS06600 864718f7338b763aafbce73966a177e3 233 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 47 61 - T 11-11-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS13505 da7d08c11740718baa2d28e2a791be5a 357 Pfam PF14559 Tetratricopeptide repeat 176 243 9.8E-6 T 11-11-2016 vm_RS13505 da7d08c11740718baa2d28e2a791be5a 357 SMART SM00028 300 333 400.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS13505 da7d08c11740718baa2d28e2a791be5a 357 SMART SM00028 200 233 300.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS13505 da7d08c11740718baa2d28e2a791be5a 357 SMART SM00028 166 199 12.0 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS13505 da7d08c11740718baa2d28e2a791be5a 357 SMART SM00028 266 299 0.21 T 11-11-2016 IPR019734 Tetratricopeptide repeat GO:0005515 vm_RS13505 da7d08c11740718baa2d28e2a791be5a 357 Gene3D G3DSA:1.25.40.10 266 333 4.9E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS13505 da7d08c11740718baa2d28e2a791be5a 357 SUPERFAMILY SSF48452 171 325 1.39E-14 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS13505 da7d08c11740718baa2d28e2a791be5a 357 Gene3D G3DSA:1.25.40.10 157 253 2.8E-11 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS05270 5ff4068c034e61bd2b42d53115c508ee 489 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 5 475 44.286 T 11-11-2016 IPR003846 Uncharacterised protein family UPF0061 vm_RS05270 5ff4068c034e61bd2b42d53115c508ee 489 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 9 458 2.3E-155 T 11-11-2016 IPR003846 Uncharacterised protein family UPF0061 vm_RS04975 f8545e11979bfd87dca44bc701743e85 296 Pfam PF01263 Aldose 1-epimerase 27 292 2.0E-53 T 11-11-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 vm_RS04975 f8545e11979bfd87dca44bc701743e85 296 PIRSF PIRSF016020 4 296 2.3E-64 T 11-11-2016 IPR025532 Glucose-6-phosphate 1-epimerase vm_RS04975 f8545e11979bfd87dca44bc701743e85 296 SUPERFAMILY SSF74650 7 284 4.96E-74 T 11-11-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 vm_RS04975 f8545e11979bfd87dca44bc701743e85 296 Gene3D G3DSA:2.70.98.10 12 292 3.5E-90 T 11-11-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0003824|GO:0005975|GO:0030246 vm_RS10900 f82f674ec6db4ee9a32e6ce074d955f1 85 SUPERFAMILY SSF47413 14 80 5.62E-28 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS10900 f82f674ec6db4ee9a32e6ce074d955f1 85 Gene3D G3DSA:1.10.260.40 14 79 1.2E-34 T 11-11-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 vm_RS10900 f82f674ec6db4ee9a32e6ce074d955f1 85 Pfam PF13693 Winged helix-turn-helix DNA-binding 16 80 1.2E-30 T 11-11-2016 vm_RS03735 fea8963bf5f3119b4b78aeeea8e30694 418 TIGRFAM TIGR03503 TIGR03503: TIGR03503 family protein 24 401 1.6E-150 T 11-11-2016 IPR020010 Conserved hypothetical protein CHP03503 vm_RS03000 35da7c2b8cd1d075f61a7f64fda2b29b 305 SUPERFAMILY SSF54211 3 126 1.82E-42 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS03000 35da7c2b8cd1d075f61a7f64fda2b29b 305 SUPERFAMILY SSF54211 134 278 3.53E-52 T 11-11-2016 IPR020568 Ribosomal protein S5 domain 2-type fold vm_RS03000 35da7c2b8cd1d075f61a7f64fda2b29b 305 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 280 46.442 T 11-11-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS03000 35da7c2b8cd1d075f61a7f64fda2b29b 305 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 298 8.5E-142 T 11-11-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS03000 35da7c2b8cd1d075f61a7f64fda2b29b 305 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 276 6.5E-108 T 11-11-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS03000 35da7c2b8cd1d075f61a7f64fda2b29b 305 Gene3D G3DSA:3.30.1700.10 129 283 1.4E-60 T 11-11-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS03000 35da7c2b8cd1d075f61a7f64fda2b29b 305 Gene3D G3DSA:3.30.230.20 3 126 3.3E-47 T 11-11-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 vm_RS00055 491b281eaf5ca43b62781c4414d4cb0c 184 Pfam PF01169 Uncharacterized protein family UPF0016 7 80 1.5E-20 T 11-11-2016 IPR001727 Gdt1 family GO:0032472 vm_RS00055 491b281eaf5ca43b62781c4414d4cb0c 184 Pfam PF01169 Uncharacterized protein family UPF0016 103 178 1.9E-20 T 11-11-2016 IPR001727 Gdt1 family GO:0032472 vm_RS02160 684e72cad549cf2356114d74a07c12b5 419 Pfam PF12704 MacB-like periplasmic core domain 20 207 1.6E-10 T 11-11-2016 IPR025857 MacB-like periplasmic core domain vm_RS02160 684e72cad549cf2356114d74a07c12b5 419 Pfam PF02687 FtsX-like permease family 293 410 8.3E-17 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 vm_RS03840 f50d76eaf9610dbb2dbac0065377640b 144 Pfam PF02169 LPP20 lipoprotein 27 119 6.6E-9 T 11-11-2016 IPR024952 Lipoprotein LPP20-like vm_RS03840 f50d76eaf9610dbb2dbac0065377640b 144 PIRSF PIRSF028687 1 144 1.1E-61 T 11-11-2016 IPR007293 Flagellar protein FlgP vm_RS04435 bbc4d5656afed89a0ea816dfd0504276 140 Pfam PF03788 LrgA family 21 114 6.3E-28 T 11-11-2016 IPR005538 LrgA/CidA family GO:0016021 vm_RS04420 be365cd601577bd11034a292496b445a 150 SUPERFAMILY SSF46785 5 134 9.54E-44 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS04420 be365cd601577bd11034a292496b445a 150 Pfam PF01475 Ferric uptake regulator family 11 130 3.9E-47 T 11-11-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 vm_RS04420 be365cd601577bd11034a292496b445a 150 Gene3D G3DSA:1.10.10.10 2 82 1.0E-30 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS04170 2cbf4ba0c995bc4a2a49e6f9dce8bed0 115 Gene3D G3DSA:3.40.30.10 2 109 7.0E-40 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS04170 2cbf4ba0c995bc4a2a49e6f9dce8bed0 115 SUPERFAMILY SSF52833 1 113 1.85E-39 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS04170 2cbf4ba0c995bc4a2a49e6f9dce8bed0 115 Pfam PF00578 AhpC/TSA family 7 113 5.3E-33 T 11-11-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 vm_RS13235 3cc89993cb8e4f34867016a03481761f 323 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 vm_RS13235 3cc89993cb8e4f34867016a03481761f 323 SUPERFAMILY SSF48576 4 322 3.42E-101 T 11-11-2016 IPR008949 Isoprenoid synthase domain vm_RS13235 3cc89993cb8e4f34867016a03481761f 323 Gene3D G3DSA:1.10.600.10 3 323 2.4E-101 T 11-11-2016 IPR008949 Isoprenoid synthase domain vm_RS13235 3cc89993cb8e4f34867016a03481761f 323 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 vm_RS13235 3cc89993cb8e4f34867016a03481761f 323 Pfam PF00348 Polyprenyl synthetase 32 273 1.6E-73 T 11-11-2016 IPR000092 Polyprenyl synthetase GO:0008299 vm_RS03460 612151345acc50300895c9ab587d7999 198 TIGRFAM TIGR01940 nqrE: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit 2 197 1.8E-107 T 11-11-2016 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 vm_RS03460 612151345acc50300895c9ab587d7999 198 PIRSF PIRSF006102 1 198 3.4E-67 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 vm_RS03460 612151345acc50300895c9ab587d7999 198 Hamap MF_00429 Na(+)-translocating NADH-quinone reductase subunit E [nqrE]. 1 198 29.969 T 11-11-2016 IPR010967 Na(+)-translocating NADH-quinone reductase subunit E GO:0009276|GO:0016021|GO:0016655|GO:0022904|GO:0055114 vm_RS03460 612151345acc50300895c9ab587d7999 198 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 196 9.1E-61 T 11-11-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 vm_RS05235 af30792c42dc4e97c146e40c1ada13ce 149 SUPERFAMILY SSF54637 4 139 2.08E-31 T 11-11-2016 IPR029069 HotDog domain vm_RS05235 af30792c42dc4e97c146e40c1ada13ce 149 Gene3D G3DSA:3.10.129.10 5 140 1.8E-40 T 11-11-2016 IPR029069 HotDog domain vm_RS05235 af30792c42dc4e97c146e40c1ada13ce 149 Pfam PF13279 Thioesterase-like superfamily 16 134 2.7E-20 T 11-11-2016 vm_RS06565 a8b26fbc387a045a6cb3f9d4066dafc6 77 Pfam PF06667 Phage shock protein B 3 74 4.0E-33 T 11-11-2016 IPR009554 Phage shock protein B GO:0006355|GO:0009271 vm_RS06565 a8b26fbc387a045a6cb3f9d4066dafc6 77 TIGRFAM TIGR02976 phageshock_pspB: phage shock protein B 1 74 3.1E-35 T 11-11-2016 IPR009554 Phage shock protein B GO:0006355|GO:0009271 vm_RS14680 12fcf03e28a5a56070cd4c918bed486d 135 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 58 131 2.0E-14 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS14680 12fcf03e28a5a56070cd4c918bed486d 135 PRINTS PR00607 Class IE cytochrome C signature 78 88 6.1E-16 T 11-11-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 vm_RS14680 12fcf03e28a5a56070cd4c918bed486d 135 PRINTS PR00607 Class IE cytochrome C signature 121 132 6.1E-16 T 11-11-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 vm_RS14680 12fcf03e28a5a56070cd4c918bed486d 135 PRINTS PR00607 Class IE cytochrome C signature 106 118 6.1E-16 T 11-11-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 vm_RS14680 12fcf03e28a5a56070cd4c918bed486d 135 PRINTS PR00607 Class IE cytochrome C signature 67 78 6.1E-16 T 11-11-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 vm_RS14680 12fcf03e28a5a56070cd4c918bed486d 135 SUPERFAMILY SSF46626 57 131 2.63E-18 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS14680 12fcf03e28a5a56070cd4c918bed486d 135 Gene3D G3DSA:1.10.760.10 56 132 9.5E-32 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS01565 825609e1d4784817f857d221c09dfb07 72 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 67 1.7E-34 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01565 825609e1d4784817f857d221c09dfb07 72 ProSitePatterns PS01143 Ribosomal protein L31 signature. 36 57 - T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01565 825609e1d4784817f857d221c09dfb07 72 Pfam PF01197 Ribosomal protein L31 1 66 1.0E-30 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01565 825609e1d4784817f857d221c09dfb07 72 PRINTS PR01249 Ribosomal protein L31 signature 2 19 5.3E-22 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01565 825609e1d4784817f857d221c09dfb07 72 PRINTS PR01249 Ribosomal protein L31 signature 32 47 5.3E-22 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01565 825609e1d4784817f857d221c09dfb07 72 PRINTS PR01249 Ribosomal protein L31 signature 47 65 5.3E-22 T 11-11-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01565 825609e1d4784817f857d221c09dfb07 72 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 69 31.658 T 11-11-2016 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS01565 825609e1d4784817f857d221c09dfb07 72 SUPERFAMILY SSF143800 1 68 1.06E-26 T 11-11-2016 vm_RS11320 5633fd5cf8911b030053f8804e64395c 301 Pfam PF03466 LysR substrate binding domain 96 299 7.0E-21 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS11320 5633fd5cf8911b030053f8804e64395c 301 SUPERFAMILY SSF53850 89 298 2.71E-38 T 11-11-2016 vm_RS11320 5633fd5cf8911b030053f8804e64395c 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 7.4E-19 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11320 5633fd5cf8911b030053f8804e64395c 301 Gene3D G3DSA:3.40.190.10 89 173 2.3E-23 T 11-11-2016 vm_RS11320 5633fd5cf8911b030053f8804e64395c 301 Gene3D G3DSA:3.40.190.10 274 301 2.3E-23 T 11-11-2016 vm_RS11320 5633fd5cf8911b030053f8804e64395c 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 5.0E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11320 5633fd5cf8911b030053f8804e64395c 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 5.0E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11320 5633fd5cf8911b030053f8804e64395c 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 5.0E-5 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS11320 5633fd5cf8911b030053f8804e64395c 301 Gene3D G3DSA:1.10.10.10 2 80 1.8E-27 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11320 5633fd5cf8911b030053f8804e64395c 301 SUPERFAMILY SSF46785 2 80 7.07E-19 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS11320 5633fd5cf8911b030053f8804e64395c 301 Gene3D G3DSA:3.40.190.10 174 269 5.8E-21 T 11-11-2016 vm_RS03730 3d29e4e4be805f17e602b4cc538dee10 247 Gene3D G3DSA:3.30.420.10 6 191 6.0E-67 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS03730 3d29e4e4be805f17e602b4cc538dee10 247 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 11 246 1.0E-105 T 11-11-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS03730 3d29e4e4be805f17e602b4cc538dee10 247 SUPERFAMILY SSF53098 10 190 3.8E-56 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS03730 3d29e4e4be805f17e602b4cc538dee10 247 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 10 230 1.9E-81 T 11-11-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS03730 3d29e4e4be805f17e602b4cc538dee10 247 Pfam PF00929 Exonuclease 13 180 1.7E-40 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS03730 3d29e4e4be805f17e602b4cc538dee10 247 SMART SM00479 11 189 6.7E-51 T 11-11-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III vm_RS05620 4df9fd0499123d8727cb725b3b90c76c 256 Pfam PF10972 Peptidoglycan-binding protein, CsiV 7 254 2.4E-63 T 11-11-2016 IPR021241 Peptidoglycan-binding protein, CsiV vm_RS11915 459606b6935a0ab7e2e93dc52b885029 337 ProSitePatterns PS01276 Peptidase family U32 signature. 163 181 - T 11-11-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 vm_RS11915 459606b6935a0ab7e2e93dc52b885029 337 Pfam PF01136 Peptidase family U32 75 336 1.2E-71 T 11-11-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 vm_RS04795 989d069544d0bfef22f4bb80991cb7e1 212 Pfam PF01914 MarC family integral membrane protein 8 208 3.5E-65 T 11-11-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 vm_RS04795 989d069544d0bfef22f4bb80991cb7e1 212 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 6 204 7.8E-67 T 11-11-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 vm_RS07900 3ce9cfcd79dd70df7a0fb10238eba320 801 SUPERFAMILY SSF49303 192 284 1.5E-15 T 11-11-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 vm_RS07900 3ce9cfcd79dd70df7a0fb10238eba320 801 SUPERFAMILY SSF49785 2 187 6.97E-44 T 11-11-2016 IPR008979 Galactose-binding domain-like vm_RS07900 3ce9cfcd79dd70df7a0fb10238eba320 801 SUPERFAMILY SSF49303 733 800 1.01E-11 T 11-11-2016 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich GO:0004553|GO:0005975 vm_RS07900 3ce9cfcd79dd70df7a0fb10238eba320 801 Gene3D G3DSA:3.20.20.80 566 631 9.3E-66 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS07900 3ce9cfcd79dd70df7a0fb10238eba320 801 Gene3D G3DSA:3.20.20.80 284 528 9.3E-66 T 11-11-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 vm_RS07900 3ce9cfcd79dd70df7a0fb10238eba320 801 Gene3D G3DSA:2.60.120.260 4 188 3.2E-13 T 11-11-2016 IPR008979 Galactose-binding domain-like vm_RS07900 3ce9cfcd79dd70df7a0fb10238eba320 801 Gene3D G3DSA:2.60.40.320 192 283 1.6E-13 T 11-11-2016 IPR013812 Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain GO:0004553|GO:0005975 vm_RS07900 3ce9cfcd79dd70df7a0fb10238eba320 801 SUPERFAMILY SSF51445 282 630 1.25E-102 T 11-11-2016 IPR017853 Glycoside hydrolase superfamily vm_RS05640 5fd1e8511d21b968ecac8cdcd1c0ef57 228 SUPERFAMILY SSF52540 4 225 4.54E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05640 5fd1e8511d21b968ecac8cdcd1c0ef57 228 SMART SM00382 33 221 6.7E-13 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS05640 5fd1e8511d21b968ecac8cdcd1c0ef57 228 Pfam PF00005 ABC transporter 24 172 1.9E-34 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS05640 5fd1e8511d21b968ecac8cdcd1c0ef57 228 Gene3D G3DSA:3.40.50.300 2 222 1.3E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS05640 5fd1e8511d21b968ecac8cdcd1c0ef57 228 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 4 223 4.3E-109 T 11-11-2016 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0006810|GO:0016020 vm_RS05640 5fd1e8511d21b968ecac8cdcd1c0ef57 228 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS08425 0f3fe6812e93c63ba823040415bc52da 534 ProSitePatterns PS01303 BCCT family of transporters signature. 336 345 - T 11-11-2016 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 vm_RS08425 0f3fe6812e93c63ba823040415bc52da 534 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 33 520 5.0E-175 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 vm_RS08425 0f3fe6812e93c63ba823040415bc52da 534 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 73 521 5.7E-139 T 11-11-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 vm_RS10480 b7b896d5b43bd328f8219c0cfb7f4b5f 252 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 63 231 1.5E-49 T 11-11-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 vm_RS10480 b7b896d5b43bd328f8219c0cfb7f4b5f 252 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 65 230 1.5E-61 T 11-11-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622 vm_RS09755 f67d898c6c7eb90cbaac7ffbcf10a2a8 365 Pfam PF05621 Bacterial TniB protein 29 203 1.4E-18 T 11-11-2016 IPR008868 Bacterial TniB vm_RS09755 f67d898c6c7eb90cbaac7ffbcf10a2a8 365 Gene3D G3DSA:3.40.50.300 50 202 1.1E-7 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09755 f67d898c6c7eb90cbaac7ffbcf10a2a8 365 SUPERFAMILY SSF52540 44 296 7.04E-8 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS09860 97d10316057851434e475e3b13f296b0 365 SUPERFAMILY SSF52172 22 138 1.42E-32 T 11-11-2016 IPR011006 CheY-like superfamily vm_RS09860 97d10316057851434e475e3b13f296b0 365 Gene3D G3DSA:3.40.50.2300 22 145 2.5E-33 T 11-11-2016 vm_RS09860 97d10316057851434e475e3b13f296b0 365 SMART SM00448 20 132 1.3E-30 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS09860 97d10316057851434e475e3b13f296b0 365 Pfam PF00072 Response regulator receiver domain 22 124 3.0E-26 T 11-11-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 vm_RS14055 b20481e05fcdc7a0a61536321c05164a 446 SMART SM00155 126 152 0.0015 T 11-11-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 vm_RS14055 b20481e05fcdc7a0a61536321c05164a 446 SMART SM00155 347 374 0.058 T 11-11-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 vm_RS14055 b20481e05fcdc7a0a61536321c05164a 446 Gene3D G3DSA:3.30.870.10 244 408 3.2E-21 T 11-11-2016 vm_RS14055 b20481e05fcdc7a0a61536321c05164a 446 Gene3D G3DSA:3.30.870.10 21 182 5.7E-16 T 11-11-2016 vm_RS14055 b20481e05fcdc7a0a61536321c05164a 446 SUPERFAMILY SSF56024 7 187 4.93E-26 T 11-11-2016 vm_RS14055 b20481e05fcdc7a0a61536321c05164a 446 SUPERFAMILY SSF56024 248 413 3.66E-26 T 11-11-2016 vm_RS14055 b20481e05fcdc7a0a61536321c05164a 446 PIRSF PIRSF000850 1 446 6.8E-235 T 11-11-2016 IPR016270 Phospholipase D, phosphatidylserine synthase type GO:0008654|GO:0016780 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|Reactome: R-HSA-1483148 vm_RS14055 b20481e05fcdc7a0a61536321c05164a 446 Pfam PF13091 PLD-like domain 34 146 2.8E-6 T 11-11-2016 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 vm_RS14055 b20481e05fcdc7a0a61536321c05164a 446 Pfam PF13091 PLD-like domain 251 402 2.2E-26 T 11-11-2016 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148 vm_RS05515 0733a0b6078f7a5fedd5f9a9e8572b0b 1229 Pfam PF16313 Met-zincin 610 686 8.6E-8 T 11-11-2016 IPR032534 Domian of unknown function DUF4953 vm_RS05515 0733a0b6078f7a5fedd5f9a9e8572b0b 1229 SUPERFAMILY SSF55486 600 679 2.42E-17 T 11-11-2016 vm_RS05515 0733a0b6078f7a5fedd5f9a9e8572b0b 1229 SUPERFAMILY SSF55486 305 414 2.42E-17 T 11-11-2016 vm_RS05515 0733a0b6078f7a5fedd5f9a9e8572b0b 1229 Gene3D G3DSA:3.40.390.10 474 679 2.8E-7 T 11-11-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 vm_RS00575 d82329e46fba033e6de513adca33ee49 71 Pfam PF13627 Prokaryotic lipoprotein-attachment site 39 61 1.5E-9 T 11-11-2016 IPR032831 Prokaryotic lipoprotein-attachment site vm_RS01490 ac68970401a1ff41f8d2cbecb0a04450 161 Pfam PF04186 FxsA cytoplasmic membrane protein 8 113 5.3E-35 T 11-11-2016 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 vm_RS08260 7fdc290780c1df4c2b462736af6f10ff 292 Pfam PF00892 EamA-like transporter family 146 276 1.8E-15 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS08260 7fdc290780c1df4c2b462736af6f10ff 292 SUPERFAMILY SSF103481 182 279 1.96E-9 T 11-11-2016 vm_RS08260 7fdc290780c1df4c2b462736af6f10ff 292 SUPERFAMILY SSF103481 47 133 6.8E-5 T 11-11-2016 vm_RS05850 49b82dbd737c65f5c230f95ac28345e9 378 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 1 378 1.0E-171 T 11-11-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 vm_RS05850 49b82dbd737c65f5c230f95ac28345e9 378 PIRSF PIRSF000267 2 377 1.9E-121 T 11-11-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 vm_RS05850 49b82dbd737c65f5c230f95ac28345e9 378 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 7 361 1.1E-105 T 11-11-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 vm_RS12555 d4a7ba655713aec0744deb945a76070c 94 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 90 35.712 T 11-11-2016 IPR023081 Cell division protein FtsB vm_RS12555 d4a7ba655713aec0744deb945a76070c 94 Pfam PF04977 Septum formation initiator 11 89 9.3E-28 T 11-11-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 vm_RS05435 80772859cf99a12997b00ece1a904734 355 Gene3D G3DSA:3.40.50.2000 189 314 5.0E-17 T 11-11-2016 vm_RS05435 80772859cf99a12997b00ece1a904734 355 Pfam PF13579 Glycosyl transferase 4-like domain 29 168 5.6E-16 T 11-11-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 vm_RS05435 80772859cf99a12997b00ece1a904734 355 Pfam PF00534 Glycosyl transferases group 1 186 313 2.1E-18 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 vm_RS05435 80772859cf99a12997b00ece1a904734 355 SUPERFAMILY SSF53756 24 353 1.48E-55 T 11-11-2016 vm_RS14645 d66a922d191aedb79f6dada3405ae86e 571 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 271 8.0E-8 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 vm_RS14645 d66a922d191aedb79f6dada3405ae86e 571 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 534 562 0.0013 T 11-11-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 vm_RS14645 d66a922d191aedb79f6dada3405ae86e 571 SUPERFAMILY SSF52540 303 553 4.11E-73 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14645 d66a922d191aedb79f6dada3405ae86e 571 ProSitePatterns PS00211 ABC transporters family signature. 455 469 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS14645 d66a922d191aedb79f6dada3405ae86e 571 Pfam PF00005 ABC transporter 24 181 3.5E-28 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS14645 d66a922d191aedb79f6dada3405ae86e 571 Pfam PF00005 ABC transporter 330 483 9.0E-35 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS14645 d66a922d191aedb79f6dada3405ae86e 571 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS14645 d66a922d191aedb79f6dada3405ae86e 571 SUPERFAMILY SSF52540 3 253 4.55E-66 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14645 d66a922d191aedb79f6dada3405ae86e 571 SMART SM00382 338 534 2.0E-17 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS14645 d66a922d191aedb79f6dada3405ae86e 571 SMART SM00382 32 231 3.9E-17 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS14645 d66a922d191aedb79f6dada3405ae86e 571 Gene3D G3DSA:3.40.50.300 2 255 1.6E-74 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS14645 d66a922d191aedb79f6dada3405ae86e 571 Gene3D G3DSA:3.40.50.300 301 555 3.9E-81 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06580 1f87fdff2a573ad6816bd6da47cefb13 189 SUPERFAMILY SSF48150 8 187 1.02E-76 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 vm_RS06580 1f87fdff2a573ad6816bd6da47cefb13 189 Gene3D G3DSA:1.10.340.30 7 187 1.3E-81 T 11-11-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 vm_RS06580 1f87fdff2a573ad6816bd6da47cefb13 189 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 9 184 3.1E-71 T 11-11-2016 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 vm_RS06580 1f87fdff2a573ad6816bd6da47cefb13 189 Pfam PF03352 Methyladenine glycosylase 11 185 1.3E-76 T 11-11-2016 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 vm_RS06220 9b9c626896b66b9526944d09921b2682 264 SUPERFAMILY SSF141868 26 261 1.57E-40 T 11-11-2016 IPR001633 EAL domain vm_RS06220 9b9c626896b66b9526944d09921b2682 264 Gene3D G3DSA:3.20.20.450 26 246 1.1E-34 T 11-11-2016 IPR001633 EAL domain vm_RS06220 9b9c626896b66b9526944d09921b2682 264 SMART SM00052 12 258 1.5E-10 T 11-11-2016 IPR001633 EAL domain vm_RS06220 9b9c626896b66b9526944d09921b2682 264 Pfam PF00563 EAL domain 29 253 2.1E-36 T 11-11-2016 IPR001633 EAL domain vm_RS04300 8ff64e7eace3b9501fde990af6393559 439 Gene3D G3DSA:3.40.50.300 94 359 2.5E-92 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04300 8ff64e7eace3b9501fde990af6393559 439 SUPERFAMILY SSF52540 94 362 1.24E-95 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS04300 8ff64e7eace3b9501fde990af6393559 439 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 146 357 4.1E-73 T 11-11-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS04300 8ff64e7eace3b9501fde990af6393559 439 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 21 437 3.2E-174 T 11-11-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS04300 8ff64e7eace3b9501fde990af6393559 439 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 24 435 3.5E-194 T 11-11-2016 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS04300 8ff64e7eace3b9501fde990af6393559 439 SMART SM00382 158 342 6.7E-6 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS04300 8ff64e7eace3b9501fde990af6393559 439 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 348 357 - T 11-11-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 vm_RS14890 25e532bf5d5bd40e40b3b86227507677 144 Pfam PF00258 Flavodoxin 4 136 6.1E-22 T 11-11-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 vm_RS14890 25e532bf5d5bd40e40b3b86227507677 144 Gene3D G3DSA:3.40.50.360 2 143 6.7E-36 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS14890 25e532bf5d5bd40e40b3b86227507677 144 SUPERFAMILY SSF52218 2 144 2.1E-40 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS12675 6714a53b76477d560f11bc5219ea2cc7 112 Pfam PF06803 Protein of unknown function (DUF1232) 50 85 5.6E-13 T 11-11-2016 IPR010652 Protein of unknown function DUF1232 vm_RS12675 6714a53b76477d560f11bc5219ea2cc7 112 PIRSF PIRSF031804 1 112 1.5E-40 T 11-11-2016 IPR016983 Uncharacterised conserved protein UCP031804 vm_RS04055 9f850a00d90f51b567f8af1c996dc914 127 Pfam PF04247 Invasion gene expression up-regulator, SirB 2 123 3.5E-37 T 11-11-2016 IPR007360 Invasion gene expression up-regulator, SirB vm_RS04055 9f850a00d90f51b567f8af1c996dc914 127 PIRSF PIRSF005610 1 121 1.9E-18 T 11-11-2016 IPR007360 Invasion gene expression up-regulator, SirB vm_RS09785 b008d99e2892a2571fa142cc1c97ffa6 100 SUPERFAMILY SSF46767 2 84 1.1E-24 T 11-11-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 vm_RS09785 b008d99e2892a2571fa142cc1c97ffa6 100 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 4 83 1.6E-22 T 11-11-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 vm_RS09785 b008d99e2892a2571fa142cc1c97ffa6 100 Gene3D G3DSA:1.10.10.10 2 87 8.1E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05705 e44fb2744716f77fb4a45f50db21353c 423 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 423 40.561 T 11-11-2016 IPR006698 Uncharacterised protein family UPF0229 vm_RS05705 e44fb2744716f77fb4a45f50db21353c 423 Pfam PF04285 Protein of unknown function (DUF444) 3 421 5.8E-189 T 11-11-2016 IPR006698 Uncharacterised protein family UPF0229 vm_RS04330 062119687f6c08221d2e357ae1cfc5ce 129 Pfam PF04347 Flagellar biosynthesis protein, FliO 43 121 2.8E-19 T 11-11-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 vm_RS04330 062119687f6c08221d2e357ae1cfc5ce 129 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 31 98 8.5E-23 T 11-11-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 vm_RS08365 031c6f23c2beb21fed4e3e8538d233c1 629 Gene3D G3DSA:2.60.120.10 7 140 5.8E-24 T 11-11-2016 IPR014710 RmlC-like jelly roll fold vm_RS08365 031c6f23c2beb21fed4e3e8538d233c1 629 SMART SM00116 233 280 4.7E-6 T 11-11-2016 IPR000644 CBS domain vm_RS08365 031c6f23c2beb21fed4e3e8538d233c1 629 SMART SM00116 159 216 0.27 T 11-11-2016 IPR000644 CBS domain vm_RS08365 031c6f23c2beb21fed4e3e8538d233c1 629 Gene3D G3DSA:3.10.580.10 149 277 5.5E-30 T 11-11-2016 vm_RS08365 031c6f23c2beb21fed4e3e8538d233c1 629 Pfam PF03445 Putative nucleotidyltransferase DUF294 305 442 8.0E-47 T 11-11-2016 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 vm_RS08365 031c6f23c2beb21fed4e3e8538d233c1 629 Pfam PF00571 CBS domain 152 215 2.7E-8 T 11-11-2016 IPR000644 CBS domain vm_RS08365 031c6f23c2beb21fed4e3e8538d233c1 629 Pfam PF00571 CBS domain 226 278 1.5E-9 T 11-11-2016 IPR000644 CBS domain vm_RS08365 031c6f23c2beb21fed4e3e8538d233c1 629 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 478 622 2.1E-45 T 11-11-2016 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding vm_RS08365 031c6f23c2beb21fed4e3e8538d233c1 629 SUPERFAMILY SSF51206 7 135 3.4E-27 T 11-11-2016 IPR018490 Cyclic nucleotide-binding-like vm_RS08365 031c6f23c2beb21fed4e3e8538d233c1 629 Pfam PF00027 Cyclic nucleotide-binding domain 37 117 4.0E-14 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain vm_RS08365 031c6f23c2beb21fed4e3e8538d233c1 629 SUPERFAMILY SSF54631 151 278 1.21E-26 T 11-11-2016 vm_RS08365 031c6f23c2beb21fed4e3e8538d233c1 629 SMART SM00100 17 134 2.7E-8 T 11-11-2016 IPR000595 Cyclic nucleotide-binding domain vm_RS00895 28c6e168b9505af31dc1163dd0203b1a 406 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 403 9.0E-160 T 11-11-2016 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 vm_RS00895 28c6e168b9505af31dc1163dd0203b1a 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 385 404 2.2E-38 T 11-11-2016 IPR003004 GspF/PilC family vm_RS00895 28c6e168b9505af31dc1163dd0203b1a 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 67 79 2.2E-38 T 11-11-2016 IPR003004 GspF/PilC family vm_RS00895 28c6e168b9505af31dc1163dd0203b1a 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 369 383 2.2E-38 T 11-11-2016 IPR003004 GspF/PilC family vm_RS00895 28c6e168b9505af31dc1163dd0203b1a 406 PRINTS PR00812 Bacterial general secretion pathway protein F signature 166 194 2.2E-38 T 11-11-2016 IPR003004 GspF/PilC family vm_RS00895 28c6e168b9505af31dc1163dd0203b1a 406 Pfam PF00482 Type II secretion system (T2SS), protein F 72 194 1.9E-34 T 11-11-2016 IPR018076 Type II secretion system F domain vm_RS00895 28c6e168b9505af31dc1163dd0203b1a 406 Pfam PF00482 Type II secretion system (T2SS), protein F 274 396 1.1E-24 T 11-11-2016 IPR018076 Type II secretion system F domain vm_RS00895 28c6e168b9505af31dc1163dd0203b1a 406 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 166 194 - T 11-11-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 vm_RS05425 014cff05d7accd3ae18181930fd0c8be 395 SUPERFAMILY SSF53756 1 369 6.28E-33 T 11-11-2016 vm_RS05425 014cff05d7accd3ae18181930fd0c8be 395 Gene3D G3DSA:3.40.50.2000 206 358 2.8E-14 T 11-11-2016 vm_RS05425 014cff05d7accd3ae18181930fd0c8be 395 Pfam PF00534 Glycosyl transferases group 1 210 358 1.6E-14 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 vm_RS02730 ce742c227f63073b11db74a43084ecc5 285 Gene3D G3DSA:3.40.1190.20 1 271 2.7E-29 T 11-11-2016 IPR029056 Ribokinase-like vm_RS02730 ce742c227f63073b11db74a43084ecc5 285 Pfam PF08543 Phosphomethylpyrimidine kinase 125 232 2.4E-5 T 11-11-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-964975 vm_RS02730 ce742c227f63073b11db74a43084ecc5 285 SUPERFAMILY SSF53613 1 269 4.68E-17 T 11-11-2016 IPR029056 Ribokinase-like vm_RS10960 5aecc3f5e119bb2004730402a6731a2e 89 Pfam PF12961 Domain of Unknown Function with PDB structure (DUF3850) 7 80 3.7E-21 T 11-11-2016 vm_RS10960 5aecc3f5e119bb2004730402a6731a2e 89 SUPERFAMILY SSF88697 5 77 7.95E-16 T 11-11-2016 IPR015947 PUA-like domain vm_RS10960 5aecc3f5e119bb2004730402a6731a2e 89 Gene3D G3DSA:3.10.480.10 5 74 1.4E-9 T 11-11-2016 vm_RS01250 5aecc3f5e119bb2004730402a6731a2e 89 Pfam PF12961 Domain of Unknown Function with PDB structure (DUF3850) 7 80 3.7E-21 T 11-11-2016 vm_RS01250 5aecc3f5e119bb2004730402a6731a2e 89 SUPERFAMILY SSF88697 5 77 7.95E-16 T 11-11-2016 IPR015947 PUA-like domain vm_RS01250 5aecc3f5e119bb2004730402a6731a2e 89 Gene3D G3DSA:3.10.480.10 5 74 1.4E-9 T 11-11-2016 vm_RS03905 677961c17c9031a3e409a0f20f7d06db 361 PRINTS PR01010 Flagellar P-ring protein signature 100 117 4.7E-86 T 11-11-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 vm_RS03905 677961c17c9031a3e409a0f20f7d06db 361 PRINTS PR01010 Flagellar P-ring protein signature 158 176 4.7E-86 T 11-11-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 vm_RS03905 677961c17c9031a3e409a0f20f7d06db 361 PRINTS PR01010 Flagellar P-ring protein signature 184 202 4.7E-86 T 11-11-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 vm_RS03905 677961c17c9031a3e409a0f20f7d06db 361 PRINTS PR01010 Flagellar P-ring protein signature 248 260 4.7E-86 T 11-11-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 vm_RS03905 677961c17c9031a3e409a0f20f7d06db 361 PRINTS PR01010 Flagellar P-ring protein signature 52 67 4.7E-86 T 11-11-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 vm_RS03905 677961c17c9031a3e409a0f20f7d06db 361 PRINTS PR01010 Flagellar P-ring protein signature 20 35 4.7E-86 T 11-11-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 vm_RS03905 677961c17c9031a3e409a0f20f7d06db 361 PRINTS PR01010 Flagellar P-ring protein signature 35 50 4.7E-86 T 11-11-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 vm_RS03905 677961c17c9031a3e409a0f20f7d06db 361 PRINTS PR01010 Flagellar P-ring protein signature 117 135 4.7E-86 T 11-11-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 vm_RS03905 677961c17c9031a3e409a0f20f7d06db 361 PRINTS PR01010 Flagellar P-ring protein signature 78 97 4.7E-86 T 11-11-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 vm_RS03905 677961c17c9031a3e409a0f20f7d06db 361 Hamap MF_00416 Flagellar P-ring protein [flgI]. 3 361 40.211 T 11-11-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 vm_RS03905 677961c17c9031a3e409a0f20f7d06db 361 Pfam PF02119 Flagellar P-ring protein 20 360 8.3E-137 T 11-11-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 vm_RS11235 218c499566869f5d29431c1b83840213 291 Gene3D G3DSA:3.20.20.60 2 236 6.9E-74 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS11235 218c499566869f5d29431c1b83840213 291 SUPERFAMILY SSF51621 2 235 3.18E-61 T 11-11-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 vm_RS11235 218c499566869f5d29431c1b83840213 291 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 6 225 1.1E-86 T 11-11-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 vm_RS11235 218c499566869f5d29431c1b83840213 291 TIGRFAM TIGR01588 citE: citrate (pro-3S)-lyase, beta subunit 3 285 2.8E-141 T 11-11-2016 IPR006475 Citrate lyase, beta subunit, bacteria GO:0005737|GO:0006084|GO:0008816|GO:0009346 KEGG: 00720+4.1.3.34|MetaCyc: PWY-5392|MetaCyc: PWY-6038 vm_RS11235 218c499566869f5d29431c1b83840213 291 PIRSF PIRSF015582 1 291 4.0E-76 T 11-11-2016 IPR011206 Citrate lyase beta subunit-like vm_RS14415 c20c73a7571f0458053d6b19c37ddf55 527 SUPERFAMILY SSF53448 21 227 2.33E-5 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS14415 c20c73a7571f0458053d6b19c37ddf55 527 SUPERFAMILY SSF56112 483 509 1.46E-7 T 11-11-2016 IPR011009 Protein kinase-like domain vm_RS14415 c20c73a7571f0458053d6b19c37ddf55 527 SUPERFAMILY SSF56112 341 433 1.46E-7 T 11-11-2016 IPR011009 Protein kinase-like domain vm_RS14930 77369ff9f202d5e5485bc9a74ff9dac2 361 Pfam PF06616 BsuBI/PstI restriction endonuclease C-terminus 49 350 1.4E-67 T 11-11-2016 IPR009528 Restriction endonuclease, type II, BsuBI/PstI, C-terminal GO:0000287|GO:0003677|GO:0009036|GO:0009307 vm_RS09585 3097bf946340dbcf380eb1c5f6503aa2 402 SUPERFAMILY SSF103473 11 391 8.63E-34 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS09585 3097bf946340dbcf380eb1c5f6503aa2 402 Gene3D G3DSA:1.20.1250.20 11 199 1.5E-19 T 11-11-2016 vm_RS09585 3097bf946340dbcf380eb1c5f6503aa2 402 Gene3D G3DSA:1.20.1250.20 216 395 1.5E-10 T 11-11-2016 vm_RS09585 3097bf946340dbcf380eb1c5f6503aa2 402 Pfam PF07690 Major Facilitator Superfamily 15 275 1.8E-19 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 vm_RS01660 eb5ac532202afa0d9ab98398c3b95934 120 ProDom PD015693 FUMARATE MEMBRANE REDUCTASE D SUBUNIT INNER TRANSMEMBRANE HYDROPHOBIC REDUCTASE POLYPEPTIDE 5 116 4.0E-59 T 11-11-2016 IPR003418 Fumarate reductase, D subunit GO:0006106|GO:0016020 vm_RS01660 eb5ac532202afa0d9ab98398c3b95934 120 Pfam PF02313 Fumarate reductase subunit D 6 118 1.4E-45 T 11-11-2016 IPR003418 Fumarate reductase, D subunit GO:0006106|GO:0016020 vm_RS01660 eb5ac532202afa0d9ab98398c3b95934 120 SUPERFAMILY SSF81343 2 120 3.05E-50 T 11-11-2016 vm_RS01660 eb5ac532202afa0d9ab98398c3b95934 120 Gene3D G3DSA:1.20.1300.10 2 120 2.2E-53 T 11-11-2016 vm_RS01660 eb5ac532202afa0d9ab98398c3b95934 120 Hamap MF_00709 Fumarate reductase subunit D [frdD]. 2 120 24.821 T 11-11-2016 IPR003418 Fumarate reductase, D subunit GO:0006106|GO:0016020 vm_RS01660 eb5ac532202afa0d9ab98398c3b95934 120 PIRSF PIRSF000179 1 120 2.6E-57 T 11-11-2016 IPR003418 Fumarate reductase, D subunit GO:0006106|GO:0016020 vm_RS03900 1cb3c27b7aac7a30fb4e10b605e34f0b 258 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 258 28.311 T 11-11-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 vm_RS03900 1cb3c27b7aac7a30fb4e10b605e34f0b 258 PRINTS PR01008 Flagellar L-ring protein signature 221 235 1.8E-21 T 11-11-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 vm_RS03900 1cb3c27b7aac7a30fb4e10b605e34f0b 258 PRINTS PR01008 Flagellar L-ring protein signature 237 251 1.8E-21 T 11-11-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 vm_RS03900 1cb3c27b7aac7a30fb4e10b605e34f0b 258 PRINTS PR01008 Flagellar L-ring protein signature 200 216 1.8E-21 T 11-11-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 vm_RS03900 1cb3c27b7aac7a30fb4e10b605e34f0b 258 PRINTS PR01008 Flagellar L-ring protein signature 102 114 1.8E-21 T 11-11-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 vm_RS03900 1cb3c27b7aac7a30fb4e10b605e34f0b 258 PRINTS PR01008 Flagellar L-ring protein signature 174 189 1.8E-21 T 11-11-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 vm_RS03900 1cb3c27b7aac7a30fb4e10b605e34f0b 258 Pfam PF02107 Flagellar L-ring protein 80 255 6.6E-58 T 11-11-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 vm_RS05725 75aef319db79442749683fe7da62cfeb 246 Pfam PF04055 Radical SAM superfamily 24 178 9.3E-32 T 11-11-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 vm_RS05725 75aef319db79442749683fe7da62cfeb 246 ProSitePatterns PS01087 Radical activating enzymes signature. 18 39 - T 11-11-2016 IPR001989 Radical-activating enzyme, conserved site GO:0016491|GO:0051539|GO:0055114 vm_RS05725 75aef319db79442749683fe7da62cfeb 246 TIGRFAM TIGR02493 PFLA: pyruvate formate-lyase 1-activating enzyme 6 239 1.0E-109 T 11-11-2016 IPR012838 Pyruvate formate-lyase activating enzyme GO:0043365|GO:0055114 vm_RS05725 75aef319db79442749683fe7da62cfeb 246 Pfam PF13353 4Fe-4S single cluster domain 16 137 2.3E-20 T 11-11-2016 vm_RS05725 75aef319db79442749683fe7da62cfeb 246 SUPERFAMILY SSF102114 23 220 2.49E-30 T 11-11-2016 vm_RS05725 75aef319db79442749683fe7da62cfeb 246 Gene3D G3DSA:3.80.30.10 69 245 4.5E-72 T 11-11-2016 vm_RS01425 178130738ddee52f8eea7bf6c7d7ab2a 439 ProDom PD332323 CIRCULATION DNA PROTEIN TAIL/DNA PHAGE PROPHAGE VIRION FLUMU BACTERIOPHAGE MU-LIKE 5 134 5.0E-58 T 11-11-2016 IPR009826 DNA circulation, N-terminal vm_RS01425 178130738ddee52f8eea7bf6c7d7ab2a 439 Pfam PF07157 DNA circularisation protein N-terminus 7 92 3.9E-28 T 11-11-2016 IPR009826 DNA circulation, N-terminal vm_RS07065 39f905bafd8ad298b14e28e5c8c35a2b 487 Pfam PF01458 Uncharacterized protein family (UPF0051) 225 458 2.7E-68 T 11-11-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 vm_RS07065 39f905bafd8ad298b14e28e5c8c35a2b 487 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 17 478 9.6E-193 T 11-11-2016 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 vm_RS07065 39f905bafd8ad298b14e28e5c8c35a2b 487 SUPERFAMILY SSF101960 38 83 9.15E-135 T 11-11-2016 vm_RS07065 39f905bafd8ad298b14e28e5c8c35a2b 487 SUPERFAMILY SSF101960 116 484 9.15E-135 T 11-11-2016 vm_RS11745 4de4ee6140456f49aaebdf156b964c19 494 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 327 436 1.8E-21 T 11-11-2016 IPR025299 CstA, C-terminal domain vm_RS11745 4de4ee6140456f49aaebdf156b964c19 494 Pfam PF02554 Carbon starvation protein CstA 5 144 5.6E-33 T 11-11-2016 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 vm_RS11745 4de4ee6140456f49aaebdf156b964c19 494 Pfam PF02554 Carbon starvation protein CstA 148 294 2.1E-19 T 11-11-2016 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 vm_RS11740 3dd09fbd707c8a6e2344482c27329012 113 Pfam PF10973 Protein of unknown function (DUF2799) 28 108 6.9E-23 T 11-11-2016 IPR021242 Protein of unknown function DUF2799 vm_RS08700 6fd5d41c0792fa993c2226d7140c898c 224 Pfam PF04172 LrgB-like family 6 218 6.8E-73 T 11-11-2016 IPR007300 CidB/LrgB family vm_RS05580 77dd9b9c3b8f335b5b0f066b15371ad3 116 PRINTS PR00332 Histidine triad family signature 27 45 1.3E-18 T 11-11-2016 IPR001310 Histidine triad (HIT) protein vm_RS05580 77dd9b9c3b8f335b5b0f066b15371ad3 116 PRINTS PR00332 Histidine triad family signature 6 22 1.3E-18 T 11-11-2016 IPR001310 Histidine triad (HIT) protein vm_RS05580 77dd9b9c3b8f335b5b0f066b15371ad3 116 PRINTS PR00332 Histidine triad family signature 95 105 1.3E-18 T 11-11-2016 IPR001310 Histidine triad (HIT) protein vm_RS05580 77dd9b9c3b8f335b5b0f066b15371ad3 116 SUPERFAMILY SSF54197 2 113 9.74E-35 T 11-11-2016 IPR011146 HIT-like domain GO:0003824 vm_RS05580 77dd9b9c3b8f335b5b0f066b15371ad3 116 Pfam PF01230 HIT domain 12 109 1.0E-28 T 11-11-2016 IPR001310 Histidine triad (HIT) protein vm_RS05580 77dd9b9c3b8f335b5b0f066b15371ad3 116 Gene3D G3DSA:3.30.428.10 3 110 5.6E-35 T 11-11-2016 IPR011146 HIT-like domain GO:0003824 vm_RS05580 77dd9b9c3b8f335b5b0f066b15371ad3 116 ProSitePatterns PS00892 HIT domain signature. 88 106 - T 11-11-2016 IPR019808 Histidine triad, conserved site vm_RS05185 816e7af374419e9854215b321319d00c 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 1.1E-18 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS05185 816e7af374419e9854215b321319d00c 315 SUPERFAMILY SSF53850 90 300 1.03E-48 T 11-11-2016 vm_RS05185 816e7af374419e9854215b321319d00c 315 Gene3D G3DSA:3.40.190.10 176 263 2.7E-23 T 11-11-2016 vm_RS05185 816e7af374419e9854215b321319d00c 315 Gene3D G3DSA:3.40.190.10 91 175 4.2E-9 T 11-11-2016 vm_RS05185 816e7af374419e9854215b321319d00c 315 SUPERFAMILY SSF46785 7 114 7.24E-21 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS05185 816e7af374419e9854215b321319d00c 315 Pfam PF03466 LysR substrate binding domain 90 296 7.1E-47 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS05185 816e7af374419e9854215b321319d00c 315 Gene3D G3DSA:1.10.10.10 7 88 4.6E-24 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS14340 2028ef8b5d76512247a4de53c2d87a5e 422 Pfam PF13440 Polysaccharide biosynthesis protein 39 334 3.0E-24 T 11-11-2016 vm_RS03585 313fcdf1920baaa5cd0002a3267dd0d7 168 PIRSF PIRSF006162 4 166 1.9E-54 T 11-11-2016 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668 vm_RS03585 313fcdf1920baaa5cd0002a3267dd0d7 168 Pfam PF04608 Phosphatidylglycerophosphatase A 15 160 8.1E-53 T 11-11-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 vm_RS03585 313fcdf1920baaa5cd0002a3267dd0d7 168 SUPERFAMILY SSF101307 8 161 1.44E-48 T 11-11-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 vm_RS05255 16853a2b77591e9b2d524045a55ff28f 610 SUPERFAMILY SSF55073 172 332 7.3E-26 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS05255 16853a2b77591e9b2d524045a55ff28f 610 Pfam PF00990 Diguanylate cyclase, GGDEF domain 167 324 2.8E-26 T 11-11-2016 IPR000160 GGDEF domain vm_RS05255 16853a2b77591e9b2d524045a55ff28f 610 Gene3D G3DSA:3.30.70.270 169 335 6.9E-30 T 11-11-2016 vm_RS05255 16853a2b77591e9b2d524045a55ff28f 610 SMART SM00052 341 588 7.4E-67 T 11-11-2016 IPR001633 EAL domain vm_RS05255 16853a2b77591e9b2d524045a55ff28f 610 SMART SM00267 156 331 3.0E-23 T 11-11-2016 IPR000160 GGDEF domain vm_RS05255 16853a2b77591e9b2d524045a55ff28f 610 Pfam PF00563 EAL domain 349 583 9.2E-60 T 11-11-2016 IPR001633 EAL domain vm_RS05255 16853a2b77591e9b2d524045a55ff28f 610 Gene3D G3DSA:3.20.20.450 347 595 8.2E-73 T 11-11-2016 IPR001633 EAL domain vm_RS05255 16853a2b77591e9b2d524045a55ff28f 610 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 164 330 6.2E-22 T 11-11-2016 IPR000160 GGDEF domain vm_RS05255 16853a2b77591e9b2d524045a55ff28f 610 SUPERFAMILY SSF141868 356 596 1.7E-68 T 11-11-2016 IPR001633 EAL domain vm_RS03155 cf0108afd97274c8a64180a522e2ca40 183 Gene3D G3DSA:1.20.120.520 2 154 1.7E-16 T 11-11-2016 vm_RS03155 cf0108afd97274c8a64180a522e2ca40 183 Pfam PF01814 Hemerythrin HHE cation binding domain 3 135 1.9E-14 T 11-11-2016 IPR012312 Haemerythrin-like Reactome: R-HSA-390471 vm_RS02295 091948e18b0844d2373a9abbfa6dc92f 241 Gene3D G3DSA:3.40.50.300 3 235 4.5E-69 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02295 091948e18b0844d2373a9abbfa6dc92f 241 Pfam PF00005 ABC transporter 20 166 7.1E-35 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS02295 091948e18b0844d2373a9abbfa6dc92f 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS02295 091948e18b0844d2373a9abbfa6dc92f 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 4 241 1.2E-126 T 11-11-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 vm_RS02295 091948e18b0844d2373a9abbfa6dc92f 241 SUPERFAMILY SSF52540 3 237 2.89E-64 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02295 091948e18b0844d2373a9abbfa6dc92f 241 SMART SM00382 28 202 3.0E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS02295 091948e18b0844d2373a9abbfa6dc92f 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 214 236 2.8E-9 T 11-11-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal vm_RS06905 738ba0104399bdc64f9706eb6f1cf821 124 Gene3D G3DSA:3.40.50.300 3 121 1.2E-20 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06905 738ba0104399bdc64f9706eb6f1cf821 124 SUPERFAMILY SSF52540 2 123 7.45E-15 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06905 738ba0104399bdc64f9706eb6f1cf821 124 Pfam PF13671 AAA domain 5 103 1.8E-15 T 11-11-2016 vm_RS09235 0301cfc92f436ae1db02ef4e228ca06d 192 Pfam PF16036 Chalcone isomerase-like 47 184 2.0E-8 T 11-11-2016 IPR016087 Chalcone isomerase GO:0016872 vm_RS06320 fda22fb81e97a05894bd0a30ed9f398a 103 Pfam PF09413 Putative prokaryotic signal transducing protein 2 67 2.8E-12 T 11-11-2016 IPR018551 Domain of unknown function DUF2007 vm_RS14705 7c14b1369818e37106377357cd2d3db5 83 Pfam PF04380 Membrane fusogenic activity 1 78 3.5E-27 T 11-11-2016 IPR007475 Membrane fusogenic activity vm_RS12540 35d5540ad27113d87ab625c7a313222e 361 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 6 341 28.427 T 11-11-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS12540 35d5540ad27113d87ab625c7a313222e 361 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 78 91 - T 11-11-2016 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Reactome: R-HSA-6782315 vm_RS12540 35d5540ad27113d87ab625c7a313222e 361 SUPERFAMILY SSF55120 6 337 5.75E-96 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS12540 35d5540ad27113d87ab625c7a313222e 361 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 187 336 4.8E-20 T 11-11-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS12540 35d5540ad27113d87ab625c7a313222e 361 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 9 171 2.6E-40 T 11-11-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS09215 3eaeb1965b078fcbaa15f4ec3ee5abc7 434 Gene3D G3DSA:3.40.1190.20 337 434 4.3E-45 T 11-11-2016 IPR029056 Ribokinase-like vm_RS09215 3eaeb1965b078fcbaa15f4ec3ee5abc7 434 Gene3D G3DSA:3.40.1190.20 96 298 4.3E-45 T 11-11-2016 IPR029056 Ribokinase-like vm_RS09215 3eaeb1965b078fcbaa15f4ec3ee5abc7 434 SUPERFAMILY SSF53613 338 417 2.65E-44 T 11-11-2016 IPR029056 Ribokinase-like vm_RS09215 3eaeb1965b078fcbaa15f4ec3ee5abc7 434 SUPERFAMILY SSF53613 31 305 2.65E-44 T 11-11-2016 IPR029056 Ribokinase-like vm_RS09215 3eaeb1965b078fcbaa15f4ec3ee5abc7 434 Gene3D G3DSA:3.30.1110.10 45 95 1.4E-5 T 11-11-2016 vm_RS09215 3eaeb1965b078fcbaa15f4ec3ee5abc7 434 Pfam PF00294 pfkB family carbohydrate kinase 77 292 8.2E-11 T 11-11-2016 IPR011611 Carbohydrate kinase PfkB vm_RS03740 db83521932c3e4f34bc9b95cb3e8dbe0 814 Gene3D G3DSA:1.10.540.10 96 235 4.0E-30 T 11-11-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 vm_RS03740 db83521932c3e4f34bc9b95cb3e8dbe0 814 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 361 508 5.9E-15 T 11-11-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 vm_RS03740 db83521932c3e4f34bc9b95cb3e8dbe0 814 SUPERFAMILY SSF56645 121 356 1.31E-41 T 11-11-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 vm_RS03740 db83521932c3e4f34bc9b95cb3e8dbe0 814 Pfam PF09317 Domain of unknown function (DUF1974) 515 796 6.0E-113 T 11-11-2016 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 vm_RS03740 db83521932c3e4f34bc9b95cb3e8dbe0 814 Gene3D G3DSA:2.40.110.10 238 349 6.3E-15 T 11-11-2016 vm_RS03740 db83521932c3e4f34bc9b95cb3e8dbe0 814 Gene3D G3DSA:1.20.140.10 350 508 6.4E-25 T 11-11-2016 vm_RS03740 db83521932c3e4f34bc9b95cb3e8dbe0 814 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 140 234 2.9E-15 T 11-11-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 vm_RS03740 db83521932c3e4f34bc9b95cb3e8dbe0 814 SUPERFAMILY SSF47203 361 508 1.05E-23 T 11-11-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 Pfam PF01578 Cytochrome C assembly protein 89 297 7.3E-55 T 11-11-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 316 639 2.9E-126 T 11-11-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 53 642 1.4E-259 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 190 205 8.6E-62 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 113 136 8.6E-62 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 352 369 8.6E-62 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 4 28 8.6E-62 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 632 645 8.6E-62 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 314 329 8.6E-62 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 395 414 8.6E-62 T 11-11-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 275 295 2.1E-94 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 80 106 2.1E-94 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 160 182 2.1E-94 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 245 265 2.1E-94 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 211 237 2.1E-94 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 295 311 2.1E-94 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 132 149 2.1E-94 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS04675 c4b320b1268c3c326cbab53b21aa6390 651 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 311 330 2.1E-94 T 11-11-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 vm_RS01115 bb2d977920691ada572867fe102e6c28 493 Gene3D G3DSA:3.40.50.300 255 487 1.2E-44 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01115 bb2d977920691ada572867fe102e6c28 493 Gene3D G3DSA:3.40.50.300 3 226 8.9E-61 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01115 bb2d977920691ada572867fe102e6c28 493 ProSitePatterns PS00211 ABC transporters family signature. 397 411 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS01115 bb2d977920691ada572867fe102e6c28 493 SUPERFAMILY SSF52540 4 225 8.95E-58 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01115 bb2d977920691ada572867fe102e6c28 493 Pfam PF00005 ABC transporter 20 169 2.1E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS01115 bb2d977920691ada572867fe102e6c28 493 Pfam PF00005 ABC transporter 270 424 6.3E-21 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS01115 bb2d977920691ada572867fe102e6c28 493 SUPERFAMILY SSF52540 260 479 1.51E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS01115 bb2d977920691ada572867fe102e6c28 493 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS01115 bb2d977920691ada572867fe102e6c28 493 SMART SM00382 29 216 1.5E-8 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS01115 bb2d977920691ada572867fe102e6c28 493 SMART SM00382 279 472 0.0017 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS09090 8bab14117ccc015675e4b1fdb210a19b 306 Pfam PF08668 HDOD domain 39 232 2.1E-34 T 11-11-2016 IPR013976 Metal-dependent hydrolase HDOD vm_RS09090 8bab14117ccc015675e4b1fdb210a19b 306 Gene3D G3DSA:1.10.3150.10 14 301 4.0E-51 T 11-11-2016 IPR013976 Metal-dependent hydrolase HDOD vm_RS09090 8bab14117ccc015675e4b1fdb210a19b 306 SUPERFAMILY SSF109604 32 300 1.98E-36 T 11-11-2016 vm_RS07590 1c305ccceb50ea98b44330df88927001 224 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 8 211 6.8E-56 T 11-11-2016 vm_RS07565 ae5748d5035e2cf8e1a903f82ea82e56 54 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 6 45 5.0E-14 T 11-11-2016 IPR008621 Cbb3-type cytochrome oxidase component vm_RS03720 a47d3e7327971fb1829befe3f204a1c7 245 Pfam PF08241 Methyltransferase domain 70 125 3.2E-8 T 11-11-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 vm_RS03720 a47d3e7327971fb1829befe3f204a1c7 245 Gene3D G3DSA:3.40.50.150 72 213 9.2E-16 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS03720 a47d3e7327971fb1829befe3f204a1c7 245 SUPERFAMILY SSF53335 71 212 7.53E-19 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS01615 81565a2b8a8b3624464e04263aadf3c2 116 SUPERFAMILY SSF55331 2 115 1.83E-34 T 11-11-2016 IPR014347 Tautomerase/MIF superfamily vm_RS01615 81565a2b8a8b3624464e04263aadf3c2 116 Gene3D G3DSA:3.30.429.10 1 115 6.6E-38 T 11-11-2016 vm_RS01615 81565a2b8a8b3624464e04263aadf3c2 116 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 92 5.4E-5 T 11-11-2016 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10 vm_RS00525 c607d16145f5f4df4c3bb24ae7f05c3f 182 Pfam PF04220 Der GTPase activator (YihI) 21 172 1.1E-44 T 11-11-2016 IPR007336 Der GTPase activator vm_RS00525 c607d16145f5f4df4c3bb24ae7f05c3f 182 Hamap MF_01058 Der GTPase-activating protein YihI [yihI]. 1 175 16.526 T 11-11-2016 IPR007336 Der GTPase activator vm_RS05445 029b80fad835e015f55940ad40973968 127 Pfam PF01627 Hpt domain 34 94 1.0E-7 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS05445 029b80fad835e015f55940ad40973968 127 Gene3D G3DSA:1.20.120.160 9 110 7.0E-19 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS05445 029b80fad835e015f55940ad40973968 127 SUPERFAMILY SSF47226 10 121 1.7E-17 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS11325 14b9ce8fb5335ef64674b69ae2f69aaf 197 Pfam PF01184 GPR1/FUN34/yaaH family 3 182 5.6E-36 T 11-11-2016 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 vm_RS11325 14b9ce8fb5335ef64674b69ae2f69aaf 197 ProSitePatterns PS01114 GPR1/FUN34/yaaH family signature. 7 16 - T 11-11-2016 IPR000791 Acetate transporter GPR1/FUN34/SatP family GO:0016021 vm_RS10380 a5b61b342b746dfa336066505f4e2617 373 Pfam PF01098 Cell cycle protein 23 367 9.3E-115 T 11-11-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 vm_RS10380 a5b61b342b746dfa336066505f4e2617 373 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 324 348 - T 11-11-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 vm_RS10380 a5b61b342b746dfa336066505f4e2617 373 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 20 367 1.5E-138 T 11-11-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 vm_RS09825 4119f9a952944f9b499a1d3b8d2c4742 82 Pfam PF03692 Putative zinc- or iron-chelating domain 3 60 4.3E-6 T 11-11-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein vm_RS15020 e985446bc91827d98f8d9083bb3da912 929 Pfam PF06986 Type-1V conjugative transfer system mating pair stabilisation 460 619 1.8E-14 T 11-11-2016 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN vm_RS15020 e985446bc91827d98f8d9083bb3da912 929 Pfam PF06986 Type-1V conjugative transfer system mating pair stabilisation 768 842 6.0E-26 T 11-11-2016 IPR014121 Type-F conjugative transfer system mating-pair stabilisation protein TraN vm_RS01595 b11cb9f9c3cdaf4e3d8af3f86b5b2a3a 305 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 13 296 2.7E-98 T 11-11-2016 vm_RS01595 b11cb9f9c3cdaf4e3d8af3f86b5b2a3a 305 PIRSF PIRSF005355 1 303 9.6E-82 T 11-11-2016 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 Reactome: R-HSA-6806664 vm_RS01595 b11cb9f9c3cdaf4e3d8af3f86b5b2a3a 305 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 4 298 20.577 T 11-11-2016 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895 vm_RS01595 b11cb9f9c3cdaf4e3d8af3f86b5b2a3a 305 Pfam PF01040 UbiA prenyltransferase family 20 263 7.7E-36 T 11-11-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 vm_RS04190 2015e9fe68214e788357350adccf930e 70 Pfam PF11446 Protein of unknown function (DUF2897) 5 51 2.1E-18 T 11-11-2016 IPR021550 Protein of unknown function DUF2897 vm_RS12240 9063f8d928fe290e2826a87e8288e939 550 SUPERFAMILY SSF52091 439 541 1.96E-11 T 11-11-2016 IPR002645 STAS domain vm_RS12240 9063f8d928fe290e2826a87e8288e939 550 Gene3D G3DSA:3.30.750.24 439 527 9.4E-10 T 11-11-2016 IPR002645 STAS domain vm_RS12240 9063f8d928fe290e2826a87e8288e939 550 Pfam PF01740 STAS domain 440 533 1.4E-11 T 11-11-2016 IPR002645 STAS domain vm_RS12240 9063f8d928fe290e2826a87e8288e939 550 Pfam PF00916 Sulfate permease family 11 376 6.5E-84 T 11-11-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 vm_RS03185 0d34232e63c08bfc0177a3e7061241ec 421 Pfam PF07670 Nucleoside recognition 99 195 1.0E-7 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 vm_RS03185 0d34232e63c08bfc0177a3e7061241ec 421 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 5 415 7.5E-152 T 11-11-2016 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 vm_RS03185 0d34232e63c08bfc0177a3e7061241ec 421 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 8 81 2.1E-26 T 11-11-2016 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 vm_RS03185 0d34232e63c08bfc0177a3e7061241ec 421 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 201 415 1.1E-74 T 11-11-2016 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 vm_RS20445 059cbdc1801de65c332f3dbb547c7a76 192 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 14 185 2.9E-20 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS20445 059cbdc1801de65c332f3dbb547c7a76 192 Gene3D G3DSA:1.10.3720.10 1 64 2.7E-34 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS20445 059cbdc1801de65c332f3dbb547c7a76 192 Gene3D G3DSA:1.10.3720.10 96 183 2.7E-34 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS20445 059cbdc1801de65c332f3dbb547c7a76 192 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 1 57 7.5E-14 T 11-11-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 vm_RS20445 059cbdc1801de65c332f3dbb547c7a76 192 SUPERFAMILY SSF161098 1 61 4.19E-35 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS20445 059cbdc1801de65c332f3dbb547c7a76 192 SUPERFAMILY SSF161098 93 187 4.19E-35 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS10105 f3dd09f74dd0c2d40c255786da59bf7a 145 Pfam PF10952 Protein of unknown function (DUF2753) 6 145 7.5E-79 T 11-11-2016 IPR020206 Uncharacterised protein family, VP2110 vm_RS10105 f3dd09f74dd0c2d40c255786da59bf7a 145 ProDom PD087558 YRN2_VIBPA ORF2 VV1184 VV13101 MOTY 3'REGION VC1009 VP2110 3 144 7.0E-78 T 11-11-2016 IPR020206 Uncharacterised protein family, VP2110 vm_RS09760 6402a29587c7cf6cb9b250a00ccf422e 621 Gene3D G3DSA:3.30.420.10 210 404 5.8E-16 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS09760 6402a29587c7cf6cb9b250a00ccf422e 621 Pfam PF00665 Integrase core domain 215 352 1.2E-8 T 11-11-2016 IPR001584 Integrase, catalytic core GO:0015074 vm_RS09760 6402a29587c7cf6cb9b250a00ccf422e 621 Gene3D G3DSA:1.10.10.60 131 199 1.1E-7 T 11-11-2016 IPR009057 Homeodomain-like GO:0003677 vm_RS09760 6402a29587c7cf6cb9b250a00ccf422e 621 SUPERFAMILY SSF53098 209 403 5.31E-13 T 11-11-2016 IPR012337 Ribonuclease H-like domain GO:0003676 vm_RS09760 6402a29587c7cf6cb9b250a00ccf422e 621 Pfam PF09299 Mu transposase, C-terminal 441 501 5.7E-6 T 11-11-2016 IPR015378 Transposase-like, Mu, C-terminal vm_RS08500 51db50980446da1bb0ad1c6cf7a0ee81 420 Pfam PF09375 Imelysin 40 398 2.2E-95 T 11-11-2016 vm_RS13550 6ee1ede048c40bd384f4c2d2a0322fc7 290 Pfam PF00483 Nucleotidyl transferase 9 266 2.1E-31 T 11-11-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 vm_RS13550 6ee1ede048c40bd384f4c2d2a0322fc7 290 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 263 6.3E-126 T 11-11-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 vm_RS13550 6ee1ede048c40bd384f4c2d2a0322fc7 290 SUPERFAMILY SSF53448 2 273 1.86E-64 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS13550 6ee1ede048c40bd384f4c2d2a0322fc7 290 Gene3D G3DSA:3.90.550.10 3 272 4.9E-67 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS18595 da23877aca72e3376082cc5ae9428d28 234 TIGRFAM TIGR03503 TIGR03503: TIGR03503 family protein 1 234 1.7E-103 T 11-11-2016 IPR020010 Conserved hypothetical protein CHP03503 vm_RS12735 01656b5f0d0e5c7cff6ee1c577239970 438 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 18 437 1.3E-102 T 11-11-2016 IPR010263 Type VI secretion protein, VC_A0114 vm_RS12735 01656b5f0d0e5c7cff6ee1c577239970 438 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 4 438 6.8E-98 T 11-11-2016 IPR010263 Type VI secretion protein, VC_A0114 vm_RS18540 aab6681fca8d19e0c644979e9e57ccf7 208 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 52 208 1.6E-68 T 11-11-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 vm_RS02240 d1b10e109f13d1b45d969698bcce7f8e 330 Pfam PF13343 Bacterial extracellular solute-binding protein 76 294 6.1E-21 T 11-11-2016 vm_RS02240 d1b10e109f13d1b45d969698bcce7f8e 330 TIGRFAM TIGR01254 sfuA: ABC transporter periplasmic binding protein, thiB subfamily 21 324 1.0E-154 T 11-11-2016 IPR005948 Thiamine ABC transporter periplasmic binding protein GO:0005215|GO:0006810|GO:0015888|GO:0030288|GO:0030975 vm_RS02240 d1b10e109f13d1b45d969698bcce7f8e 330 SUPERFAMILY SSF53850 24 326 1.96E-66 T 11-11-2016 vm_RS02240 d1b10e109f13d1b45d969698bcce7f8e 330 TIGRFAM TIGR01276 thiB: thiamin/thiamin pyrophosphate ABC transporter, thiamin/thiamin pyrophospate-binding protein 9 329 3.6E-148 T 11-11-2016 IPR005967 Proteobacterial thiamine ABC transporter, periplasmic binding protein GO:0005524|GO:0015888|GO:0030288|GO:0048502 vm_RS02240 d1b10e109f13d1b45d969698bcce7f8e 330 Gene3D G3DSA:3.40.190.10 244 288 4.8E-36 T 11-11-2016 vm_RS02240 d1b10e109f13d1b45d969698bcce7f8e 330 Gene3D G3DSA:3.40.190.10 23 131 4.8E-36 T 11-11-2016 vm_RS04185 45d170ba6fe82fbe82aeb0c05b6ff2d3 339 Pfam PF06804 NlpB/DapX lipoprotein 35 335 7.5E-102 T 11-11-2016 IPR010653 NlpB/DapX lipoprotein vm_RS04185 45d170ba6fe82fbe82aeb0c05b6ff2d3 339 Hamap MF_00924 Outer membrane protein assembly factor BamC [bamC]. 4 337 36.531 T 11-11-2016 IPR014524 Outer membrane protein assembly factor BamC vm_RS04185 45d170ba6fe82fbe82aeb0c05b6ff2d3 339 PIRSF PIRSF026343 4 339 2.5E-146 T 11-11-2016 IPR014524 Outer membrane protein assembly factor BamC vm_RS10575 f902d9bc8ed80d7d3a62e5de43537da4 329 PIRSF PIRSF028696 1 329 1.1E-101 T 11-11-2016 IPR016896 Protein of unknown function DUF2860 vm_RS10575 f902d9bc8ed80d7d3a62e5de43537da4 329 Pfam PF11059 Protein of unknown function (DUF2860) 29 327 8.3E-84 T 11-11-2016 IPR016896 Protein of unknown function DUF2860 vm_RS14500 fd64aee6b9c73651e471278538925d88 325 PIRSF PIRSF026649 13 316 6.0E-86 T 11-11-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 vm_RS14500 fd64aee6b9c73651e471278538925d88 325 TIGRFAM TIGR02208 lipid_A_msbB: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 14 316 1.6E-116 T 11-11-2016 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243|KEGG: 00600+2.3.1.24 vm_RS14500 fd64aee6b9c73651e471278538925d88 325 Hamap MF_01944 Lipid A biosynthesis myristoyltransferase [lpxM]. 7 313 50.811 T 11-11-2016 IPR011921 Lipid A biosynthesis myristoyltransferase GO:0009103|GO:0009276|GO:0016021|GO:0016747 KEGG: 00540+2.3.1.243|KEGG: 00600+2.3.1.24 vm_RS14500 fd64aee6b9c73651e471278538925d88 325 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 15 308 6.1E-76 T 11-11-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 vm_RS11225 9f7ca5b0fde08d954e0931be13c37d6d 178 Pfam PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 9 173 1.9E-56 T 11-11-2016 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 vm_RS11225 9f7ca5b0fde08d954e0931be13c37d6d 178 TIGRFAM TIGR03124 citrate_citX: holo-ACP synthase CitX 9 174 1.0E-63 T 11-11-2016 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 vm_RS11225 9f7ca5b0fde08d954e0931be13c37d6d 178 Hamap MF_00398 Probable apo-citrate lyase phosphoribosyl-dephospho-CoA transferase [citX]. 4 178 35.819 T 11-11-2016 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase GO:0051191 vm_RS10515 30eed7816a0481603838d5b948939199 382 SUPERFAMILY SSF53756 20 381 2.47E-45 T 11-11-2016 vm_RS10515 30eed7816a0481603838d5b948939199 382 Pfam PF13439 Glycosyltransferase Family 4 21 189 1.6E-9 T 11-11-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 vm_RS10515 30eed7816a0481603838d5b948939199 382 Pfam PF00534 Glycosyl transferases group 1 195 347 4.6E-20 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 vm_RS10515 30eed7816a0481603838d5b948939199 382 Gene3D G3DSA:3.40.50.2000 212 321 1.5E-11 T 11-11-2016 vm_RS03035 0daa85b9b7648f17616877ce432a3c82 261 Pfam PF01925 Sulfite exporter TauE/SafE 12 246 7.2E-40 T 11-11-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 vm_RS12300 78cfa45a2e2f264b01768a45f60d5de5 421 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 295 396 9.0E-42 T 11-11-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 vm_RS12300 78cfa45a2e2f264b01768a45f60d5de5 421 Pfam PF00033 Cytochrome b/b6/petB 23 211 6.6E-66 T 11-11-2016 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 vm_RS12300 78cfa45a2e2f264b01768a45f60d5de5 421 SUPERFAMILY SSF81342 248 296 7.53E-93 T 11-11-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 vm_RS12300 78cfa45a2e2f264b01768a45f60d5de5 421 SUPERFAMILY SSF81342 6 221 7.53E-93 T 11-11-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 Reactome: R-HSA-611105 vm_RS12300 78cfa45a2e2f264b01768a45f60d5de5 421 SUPERFAMILY SSF81648 297 411 1.0E-33 T 11-11-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 Reactome: R-HSA-611105 vm_RS12300 78cfa45a2e2f264b01768a45f60d5de5 421 PIRSF PIRSF038885 1 421 1.1E-153 T 11-11-2016 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 Reactome: R-HSA-611105 vm_RS12300 78cfa45a2e2f264b01768a45f60d5de5 421 Gene3D G3DSA:1.20.810.10 6 416 4.3E-158 T 11-11-2016 IPR027387 Cytochrome b/b6-like domain Reactome: R-HSA-611105 vm_RS04685 bf7de1efcf81ea8b16ae796ba27acdd9 158 Pfam PF03918 Cytochrome C biogenesis protein 9 150 3.5E-55 T 11-11-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family vm_RS20435 b0b998a329b5fadd0fcb4cc1ddaf57bf 190 ProSitePatterns PS00211 ABC transporters family signature. 121 135 - T 11-11-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 vm_RS20435 b0b998a329b5fadd0fcb4cc1ddaf57bf 190 SMART SM00382 1 187 5.3E-7 T 11-11-2016 IPR003593 AAA+ ATPase domain vm_RS20435 b0b998a329b5fadd0fcb4cc1ddaf57bf 190 Pfam PF00005 ABC transporter 2 149 1.9E-30 T 11-11-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 vm_RS20435 b0b998a329b5fadd0fcb4cc1ddaf57bf 190 SUPERFAMILY SSF52540 2 190 1.82E-60 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS20435 b0b998a329b5fadd0fcb4cc1ddaf57bf 190 Gene3D G3DSA:3.40.50.300 2 190 2.6E-62 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06125 aad5b117fb1d8a90562908ae57873c8e 449 SUPERFAMILY SSF52540 153 199 2.16E-19 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06125 aad5b117fb1d8a90562908ae57873c8e 449 SUPERFAMILY SSF52540 250 437 2.16E-19 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06125 aad5b117fb1d8a90562908ae57873c8e 449 Gene3D G3DSA:3.40.50.300 151 197 5.2E-12 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06125 aad5b117fb1d8a90562908ae57873c8e 449 Gene3D G3DSA:3.40.50.300 282 375 5.2E-12 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS06125 aad5b117fb1d8a90562908ae57873c8e 449 Gene3D G3DSA:3.40.50.300 230 238 5.2E-12 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS08295 0d64742f219e038321b12061ce52384f 457 PIRSF PIRSF019381 1 457 2.5E-196 T 11-11-2016 IPR007413 Protein of unknown function DUF463, YcjX-like protein vm_RS08295 0d64742f219e038321b12061ce52384f 457 Pfam PF04317 YcjX-like family, DUF463 20 456 9.8E-185 T 11-11-2016 IPR007413 Protein of unknown function DUF463, YcjX-like protein vm_RS18120 d1e7657735062d4b270082c0daa431cc 86 Gene3D G3DSA:3.30.70.240 1 78 1.2E-26 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS18120 d1e7657735062d4b270082c0daa431cc 86 SMART SM00838 1 75 1.4E-31 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS18120 d1e7657735062d4b270082c0daa431cc 86 SUPERFAMILY SSF54980 1 80 1.25E-25 T 11-11-2016 IPR009022 Elongation factor G, III-V domain vm_RS18120 d1e7657735062d4b270082c0daa431cc 86 Pfam PF00679 Elongation factor G C-terminus 1 74 8.7E-24 T 11-11-2016 IPR000640 Translation elongation factor EFG, V domain vm_RS07585 bd7b2a10c647a6f866bb764f1fa7a101 55 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 48 5.7E-16 T 11-11-2016 IPR004714 Cytochrome oxidase maturation protein cbb3-type vm_RS07585 bd7b2a10c647a6f866bb764f1fa7a101 55 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 2 45 2.4E-21 T 11-11-2016 IPR004714 Cytochrome oxidase maturation protein cbb3-type vm_RS02355 5912290ab6c6540959c330f86c7e1c41 84 Gene3D G3DSA:3.30.300.90 3 80 2.0E-25 T 11-11-2016 IPR002634 BolA protein vm_RS02355 5912290ab6c6540959c330f86c7e1c41 84 SUPERFAMILY SSF82657 4 82 1.96E-27 T 11-11-2016 IPR002634 BolA protein vm_RS02355 5912290ab6c6540959c330f86c7e1c41 84 Pfam PF01722 BolA-like protein 20 74 4.2E-11 T 11-11-2016 IPR002634 BolA protein vm_RS02355 5912290ab6c6540959c330f86c7e1c41 84 PIRSF PIRSF003113 1 83 2.5E-20 T 11-11-2016 IPR002634 BolA protein vm_RS08545 a87d200addb5d6ceafae6dd6b7275e87 139 TIGRFAM TIGR03147 cyt_nit_nrfF: cytochrome c nitrite reductase, accessory protein NrfF 27 139 5.1E-50 T 11-11-2016 IPR017565 Formate-dependent nitrite reductase complex, subunit NrfF vm_RS08545 a87d200addb5d6ceafae6dd6b7275e87 139 Pfam PF03918 Cytochrome C biogenesis protein 31 138 1.3E-43 T 11-11-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family vm_RS14405 127109f4cd4eec4aeccd9403afa3fc7f 426 SUPERFAMILY SSF53756 53 405 3.61E-14 T 11-11-2016 vm_RS14405 127109f4cd4eec4aeccd9403afa3fc7f 426 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 34 212 8.7E-64 T 11-11-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 vm_RS14405 127109f4cd4eec4aeccd9403afa3fc7f 426 Pfam PF00534 Glycosyl transferases group 1 235 400 2.5E-9 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 vm_RS00550 6941da1302cf6a1b8487253365d3268b 242 SUPERFAMILY SSF69618 1 240 2.49E-48 T 11-11-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00550 6941da1302cf6a1b8487253365d3268b 242 Pfam PF02602 Uroporphyrinogen-III synthase HemD 14 237 5.3E-32 T 11-11-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|Reactome: R-HSA-189451 vm_RS00550 6941da1302cf6a1b8487253365d3268b 242 Gene3D G3DSA:3.40.50.10090 2 113 3.0E-10 T 11-11-2016 vm_RS00550 6941da1302cf6a1b8487253365d3268b 242 Gene3D G3DSA:3.40.50.10090 119 240 1.3E-6 T 11-11-2016 vm_RS00135 7984f8f4e51c3d5e1fd8f3fe056dc20b 88 Pfam PF06288 Protein of unknown function (DUF1040) 1 86 2.7E-45 T 11-11-2016 IPR009383 Protein of unknown function DUF1040 vm_RS00135 7984f8f4e51c3d5e1fd8f3fe056dc20b 88 ProDom PD029038 YIHD CYTOPLASMIC ENZYME Y3814 GLYCOGEN YPO0013A HI0845 DIRECT ORF1 UNCHARACTERIZED 1 87 2.0E-37 T 11-11-2016 IPR009383 Protein of unknown function DUF1040 vm_RS09445 4333a757cd3660d17b37702027653ffb 121 SUPERFAMILY SSF47226 11 108 1.07E-17 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS09445 4333a757cd3660d17b37702027653ffb 121 SMART SM00073 14 110 0.0091 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS09445 4333a757cd3660d17b37702027653ffb 121 Gene3D G3DSA:1.20.120.160 10 109 3.9E-21 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS09445 4333a757cd3660d17b37702027653ffb 121 Pfam PF01627 Hpt domain 24 82 1.6E-9 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS02850 d755d5f708cc044fc1883471e807a4bc 291 Pfam PF01478 Type IV leader peptidase family 135 244 9.6E-28 T 11-11-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 vm_RS02850 d755d5f708cc044fc1883471e807a4bc 291 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 17 122 5.7E-33 T 11-11-2016 IPR010627 Peptidase A24A, N-terminal vm_RS02850 d755d5f708cc044fc1883471e807a4bc 291 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 224 239 9.6E-30 T 11-11-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial vm_RS02850 d755d5f708cc044fc1883471e807a4bc 291 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 201 211 9.6E-30 T 11-11-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial vm_RS02850 d755d5f708cc044fc1883471e807a4bc 291 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 212 223 9.6E-30 T 11-11-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial vm_RS02850 d755d5f708cc044fc1883471e807a4bc 291 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 143 160 9.6E-30 T 11-11-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial vm_RS05635 f6d7e64c155eb0506df30b4f688d0c94 402 Pfam PF12704 MacB-like periplasmic core domain 29 204 2.7E-12 T 11-11-2016 IPR025857 MacB-like periplasmic core domain vm_RS05635 f6d7e64c155eb0506df30b4f688d0c94 402 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 402 4.4E-131 T 11-11-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 vm_RS05635 f6d7e64c155eb0506df30b4f688d0c94 402 Pfam PF02687 FtsX-like permease family 271 395 7.3E-17 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 vm_RS12645 466f933bdc07a441ec8fa844f30debf3 214 Pfam PF11726 Protein of unknown function (DUF3296) 35 208 4.6E-39 T 11-11-2016 IPR021723 Inovirus Gp2 vm_RS14595 92827ccc6cbc052f8d5fb9ac807f31cb 226 Pfam PF01810 LysE type translocator 16 211 4.5E-41 T 11-11-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 vm_RS14595 92827ccc6cbc052f8d5fb9ac807f31cb 226 PIRSF PIRSF006324 1 217 2.7E-54 T 11-11-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 vm_RS02440 b35237c526a7a13ed40d4a9a9340c294 366 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 344 9.2E-70 T 11-11-2016 IPR005495 Permease LptG/LptF-related GO:0016021 vm_RS02440 b35237c526a7a13ed40d4a9a9340c294 366 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 346 1.4E-119 T 11-11-2016 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 vm_RS00230 07d48cacbc88fd2174d2971c51e8b8b8 91 Pfam PF07369 Protein of unknown function (DUF1488) 5 85 9.7E-26 T 11-11-2016 IPR009962 Protein of unknown function DUF1488 vm_RS00230 07d48cacbc88fd2174d2971c51e8b8b8 91 SUPERFAMILY SSF160272 1 86 1.14E-29 T 11-11-2016 IPR009962 Protein of unknown function DUF1488 vm_RS00230 07d48cacbc88fd2174d2971c51e8b8b8 91 Gene3D G3DSA:3.30.160.140 1 88 1.1E-35 T 11-11-2016 IPR009962 Protein of unknown function DUF1488 vm_RS04990 eb85ad41775c0d04fc6ac64bb91192e5 274 Pfam PF11207 Protein of unknown function (DUF2989) 16 218 7.6E-72 T 11-11-2016 IPR021372 Protein of unknown function DUF2989 vm_RS02735 121289bd0a4987362a79c6e2066b1a8b 399 ProSitePatterns PS00594 Aromatic amino acids permeases signature. 27 43 - T 11-11-2016 IPR013061 Tryptophan/tryrosine permease, conserved site vm_RS02735 121289bd0a4987362a79c6e2066b1a8b 399 Pfam PF03222 Tryptophan/tyrosine permease family 13 395 1.4E-105 T 11-11-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 vm_RS02735 121289bd0a4987362a79c6e2066b1a8b 399 TIGRFAM TIGR00837 araaP: aromatic amino acid transport protein 17 388 3.8E-107 T 11-11-2016 IPR013059 Tryptophan/tyrosine transporter GO:0005887|GO:0015173|GO:0015801 vm_RS02735 121289bd0a4987362a79c6e2066b1a8b 399 PRINTS PR00166 Aromatic amino acid permease signature 158 178 1.1E-77 T 11-11-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 vm_RS02735 121289bd0a4987362a79c6e2066b1a8b 399 PRINTS PR00166 Aromatic amino acid permease signature 231 250 1.1E-77 T 11-11-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 vm_RS02735 121289bd0a4987362a79c6e2066b1a8b 399 PRINTS PR00166 Aromatic amino acid permease signature 342 361 1.1E-77 T 11-11-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 vm_RS02735 121289bd0a4987362a79c6e2066b1a8b 399 PRINTS PR00166 Aromatic amino acid permease signature 92 112 1.1E-77 T 11-11-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 vm_RS02735 121289bd0a4987362a79c6e2066b1a8b 399 PRINTS PR00166 Aromatic amino acid permease signature 192 214 1.1E-77 T 11-11-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 vm_RS02735 121289bd0a4987362a79c6e2066b1a8b 399 PRINTS PR00166 Aromatic amino acid permease signature 288 307 1.1E-77 T 11-11-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 vm_RS02735 121289bd0a4987362a79c6e2066b1a8b 399 PRINTS PR00166 Aromatic amino acid permease signature 321 339 1.1E-77 T 11-11-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 vm_RS02735 121289bd0a4987362a79c6e2066b1a8b 399 PRINTS PR00166 Aromatic amino acid permease signature 20 43 1.1E-77 T 11-11-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 vm_RS02735 121289bd0a4987362a79c6e2066b1a8b 399 PRINTS PR00166 Aromatic amino acid permease signature 47 66 1.1E-77 T 11-11-2016 IPR002091 Aromatic amino acid permease GO:0006865|GO:0016020 vm_RS07505 b7a23d7209d8e87b511deb88a48ed113 566 Pfam PF11949 Protein of unknown function (DUF3466) 268 565 3.2E-62 T 11-11-2016 IPR022562 Protein of unknown function DUF3466 vm_RS07505 b7a23d7209d8e87b511deb88a48ed113 566 TIGRFAM TIGR03501 GlyGly_CTERM: GlyGly-CTERM domain 546 565 0.0033 T 11-11-2016 IPR020008 GlyGly-CTERM domain vm_RS07220 29755ded9590f6c3d2fa40d7b4aa17e5 134 Pfam PF02472 Biopolymer transport protein ExbD/TolR 9 132 6.4E-29 T 11-11-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 vm_RS13210 8113b0cf10a721ada25eee2c7fab9415 157 Pfam PF12821 Threonine/Serine exporter, ThrE 13 147 3.2E-36 T 11-11-2016 IPR024528 Threonine/Serine exporter, ThrE vm_RS14230 7a603177106a2ff88165e303f0700917 445 Pfam PF13520 Amino acid permease 8 421 5.9E-36 T 11-11-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 vm_RS14230 7a603177106a2ff88165e303f0700917 445 PIRSF PIRSF006060 1 437 4.6E-49 T 11-11-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 vm_RS06570 15379955657e5bed2d132a76cde33815 129 Pfam PF04024 PspC domain 4 62 6.5E-17 T 11-11-2016 IPR007168 Phage shock protein, PspC, N-terminal vm_RS06570 15379955657e5bed2d132a76cde33815 129 TIGRFAM TIGR02978 phageshock_pspC: phage shock protein C 3 129 1.7E-45 T 11-11-2016 IPR014320 Phage shock protein, PspC vm_RS10630 b842aa46192c31d028ca61176df6aee7 182 Pfam PF07348 Syd protein (SUKH-2) 7 179 2.4E-70 T 11-11-2016 IPR009948 Syd GO:0009898 vm_RS10630 b842aa46192c31d028ca61176df6aee7 182 Hamap MF_01104 Protein Syd [syd]. 3 181 37.473 T 11-11-2016 IPR009948 Syd GO:0009898 vm_RS10870 3aaa2023790f75ed351dddcd48467a2e 107 Hamap MF_00460 Protein RnfH [rnfH]. 6 96 25.278 T 11-11-2016 IPR005346 RnfH protein vm_RS10870 3aaa2023790f75ed351dddcd48467a2e 107 SUPERFAMILY SSF54285 4 80 1.09E-25 T 11-11-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp vm_RS10870 3aaa2023790f75ed351dddcd48467a2e 107 Gene3D G3DSA:3.10.20.280 1 90 3.1E-37 T 11-11-2016 IPR005346 RnfH protein vm_RS10870 3aaa2023790f75ed351dddcd48467a2e 107 Pfam PF03658 RnfH family Ubiquitin 6 88 5.3E-34 T 11-11-2016 IPR005346 RnfH protein vm_RS08870 0dff51e6f6b4307794f88159da35df49 227 SUPERFAMILY SSF103039 10 173 1.7E-24 T 11-11-2016 IPR028976 CheC-like domain vm_RS08870 0dff51e6f6b4307794f88159da35df49 227 Gene3D G3DSA:3.40.1550.10 15 173 2.0E-14 T 11-11-2016 IPR028976 CheC-like domain vm_RS08870 0dff51e6f6b4307794f88159da35df49 227 Pfam PF11813 Protein of unknown function (DUF3334) 3 227 3.0E-115 T 11-11-2016 IPR024513 Protein of unknown function DUF3334 vm_RS00715 6bc39045d9fea0a09fc5be82bab1fc99 123 ProDom PD076479 MEMBRANE INNER YIJD TRANSMEMBRANE Y0323 AAA SIMILAR A ACETYL-COENZYME VV0128 7 116 3.0E-47 T 11-11-2016 IPR009867 Protein of unknown function DUF1422 vm_RS00715 6bc39045d9fea0a09fc5be82bab1fc99 123 Pfam PF07226 Protein of unknown function (DUF1422) 9 118 5.3E-47 T 11-11-2016 IPR009867 Protein of unknown function DUF1422 vm_RS11805 3f0bca9b205aeb2a04530ec4f4965dde 283 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 2 283 2.7E-43 T 11-11-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 vm_RS11805 3f0bca9b205aeb2a04530ec4f4965dde 283 PRINTS PR00108 Thymidylate synthase family signature 211 228 7.2E-14 T 11-11-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 vm_RS11805 3f0bca9b205aeb2a04530ec4f4965dde 283 PRINTS PR00108 Thymidylate synthase family signature 44 65 7.2E-14 T 11-11-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 vm_RS11805 3f0bca9b205aeb2a04530ec4f4965dde 283 PRINTS PR00108 Thymidylate synthase family signature 173 199 7.2E-14 T 11-11-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 vm_RS11805 3f0bca9b205aeb2a04530ec4f4965dde 283 PRINTS PR00108 Thymidylate synthase family signature 129 148 7.2E-14 T 11-11-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 vm_RS11805 3f0bca9b205aeb2a04530ec4f4965dde 283 Hamap MF_00008 Thymidylate synthase [thyA]. 1 283 32.752 T 11-11-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 vm_RS11805 3f0bca9b205aeb2a04530ec4f4965dde 283 Pfam PF00303 Thymidylate synthase 2 283 7.1E-74 T 11-11-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 vm_RS11805 3f0bca9b205aeb2a04530ec4f4965dde 283 SUPERFAMILY SSF55831 2 283 1.44E-91 T 11-11-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 vm_RS11805 3f0bca9b205aeb2a04530ec4f4965dde 283 ProSitePatterns PS00091 Thymidylate synthase active site. 140 168 - T 11-11-2016 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 vm_RS11805 3f0bca9b205aeb2a04530ec4f4965dde 283 Gene3D G3DSA:3.30.572.10 2 283 1.9E-78 T 11-11-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|Reactome: R-HSA-113510|Reactome: R-HSA-500753|Reactome: R-HSA-69205 vm_RS07215 d67eac400baa367674bcf3994d51851b 180 Pfam PF01618 MotA/TolQ/ExbB proton channel family 68 173 2.6E-22 T 11-11-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 vm_RS00520 4f648b41b56e8296fff88edcf907540b 212 SUPERFAMILY SSF53335 46 199 3.58E-22 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS00520 4f648b41b56e8296fff88edcf907540b 212 Pfam PF13489 Methyltransferase domain 61 192 7.5E-21 T 11-11-2016 vm_RS00520 4f648b41b56e8296fff88edcf907540b 212 Gene3D G3DSA:3.40.50.150 72 203 6.7E-17 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS14420 db1003649d9765500a5aad06beea9959 247 SUPERFAMILY SSF53448 2 239 4.61E-21 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS14420 db1003649d9765500a5aad06beea9959 247 Gene3D G3DSA:3.90.550.10 2 240 2.4E-13 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS14420 db1003649d9765500a5aad06beea9959 247 PIRSF PIRSF028162 1 246 8.1E-103 T 11-11-2016 IPR016873 Capsular polysaccharide biosynthesis protein, BcbE, predicted vm_RS11705 7f131d3a5bebb229d8ecf76245f3f6d6 357 Gene3D G3DSA:3.20.20.70 10 347 5.9E-153 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS11705 7f131d3a5bebb229d8ecf76245f3f6d6 357 Pfam PF00793 DAHP synthetase I family 41 340 1.8E-104 T 11-11-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 vm_RS11705 7f131d3a5bebb229d8ecf76245f3f6d6 357 SUPERFAMILY SSF51569 8 345 1.74E-137 T 11-11-2016 vm_RS11705 7f131d3a5bebb229d8ecf76245f3f6d6 357 PIRSF PIRSF001361 1 353 2.6E-163 T 11-11-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 vm_RS11705 7f131d3a5bebb229d8ecf76245f3f6d6 357 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 8 347 1.8E-161 T 11-11-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164 vm_RS11355 92d9d9fe309f36ebec19c24713135f15 289 SUPERFAMILY SSF55186 205 273 1.47E-10 T 11-11-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 vm_RS11355 92d9d9fe309f36ebec19c24713135f15 289 SUPERFAMILY SSF55186 122 176 1.47E-10 T 11-11-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 vm_RS12405 ca45f182afdbeb5386018236e13bb2f9 376 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 19 370 1.4E-171 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 vm_RS12405 ca45f182afdbeb5386018236e13bb2f9 376 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 20 374 3.0E-159 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 vm_RS12405 ca45f182afdbeb5386018236e13bb2f9 376 PIRSF PIRSF015658 1 376 5.3E-179 T 11-11-2016 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 vm_RS13800 ce4eca8de0da0a3a6a23cadca37da677 326 SUPERFAMILY SSF50998 33 317 2.2E-42 T 11-11-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily vm_RS13800 ce4eca8de0da0a3a6a23cadca37da677 326 Gene3D G3DSA:2.130.10.10 94 325 3.8E-37 T 11-11-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 vm_RS13800 ce4eca8de0da0a3a6a23cadca37da677 326 Gene3D G3DSA:2.130.10.10 40 93 1.7E-5 T 11-11-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 vm_RS13800 ce4eca8de0da0a3a6a23cadca37da677 326 Pfam PF00400 WD domain, G-beta repeat 157 189 0.0016 T 11-11-2016 IPR001680 WD40 repeat GO:0005515 vm_RS13800 ce4eca8de0da0a3a6a23cadca37da677 326 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 176 190 - T 11-11-2016 IPR019775 WD40 repeat, conserved site vm_RS13800 ce4eca8de0da0a3a6a23cadca37da677 326 SMART SM00320 277 323 270.0 T 11-11-2016 IPR001680 WD40 repeat GO:0005515 vm_RS13800 ce4eca8de0da0a3a6a23cadca37da677 326 SMART SM00320 150 189 2.9E-4 T 11-11-2016 IPR001680 WD40 repeat GO:0005515 vm_RS13800 ce4eca8de0da0a3a6a23cadca37da677 326 SMART SM00320 236 274 0.51 T 11-11-2016 IPR001680 WD40 repeat GO:0005515 vm_RS13800 ce4eca8de0da0a3a6a23cadca37da677 326 SMART SM00320 192 230 0.073 T 11-11-2016 IPR001680 WD40 repeat GO:0005515 vm_RS13800 ce4eca8de0da0a3a6a23cadca37da677 326 SMART SM00320 68 106 37.0 T 11-11-2016 IPR001680 WD40 repeat GO:0005515 vm_RS08270 959202c8df8ae37d1d6e18ebbae8008c 157 Pfam PF11163 Protein of unknown function (DUF2947) 3 154 3.7E-71 T 11-11-2016 IPR021334 Protein of unknown function DUF2947 vm_RS10495 78df2729be1adb1bf257f06b0cbacb54 447 Pfam PF00501 AMP-binding enzyme 117 275 1.2E-5 T 11-11-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 vm_RS10495 78df2729be1adb1bf257f06b0cbacb54 447 SUPERFAMILY SSF56801 111 438 9.42E-19 T 11-11-2016 vm_RS10495 78df2729be1adb1bf257f06b0cbacb54 447 Gene3D G3DSA:3.40.50.980 117 272 7.8E-8 T 11-11-2016 vm_RS13680 e06ed01b888fc055b1d28325f6a9de96 69 TIGRFAM TIGR02975 phageshock_pspG: phage shock protein G 3 63 9.3E-20 T 11-11-2016 IPR014318 Phage shock protein, PspG vm_RS13680 e06ed01b888fc055b1d28325f6a9de96 69 Pfam PF09583 Phage shock protein G (Phageshock_PspG) 1 63 4.3E-21 T 11-11-2016 IPR014318 Phage shock protein, PspG vm_RS19025 e5df9abaaed0222d00e7e13ce87ab13b 153 Pfam PF01514 Secretory protein of YscJ/FliF family 21 153 4.2E-32 T 11-11-2016 IPR006182 Secretory protein YscJ/FliF vm_RS14375 b349ce1ac5e5f3de612729c0a8040740 590 Gene3D G3DSA:3.20.20.370 395 543 1.2E-32 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 vm_RS14375 b349ce1ac5e5f3de612729c0a8040740 590 SUPERFAMILY SSF88713 366 563 5.34E-40 T 11-11-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 vm_RS14375 b349ce1ac5e5f3de612729c0a8040740 590 Pfam PF01522 Polysaccharide deacetylase 405 541 1.3E-33 T 11-11-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 vm_RS14375 b349ce1ac5e5f3de612729c0a8040740 590 SUPERFAMILY SSF53756 10 338 2.55E-33 T 11-11-2016 vm_RS14375 b349ce1ac5e5f3de612729c0a8040740 590 Pfam PF13439 Glycosyltransferase Family 4 13 158 1.1E-23 T 11-11-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 vm_RS08190 4976febbeb60875e5bde9e0abbd9e0c1 324 SUPERFAMILY SSF53822 23 323 2.17E-77 T 11-11-2016 IPR028082 Periplasmic binding protein-like I vm_RS08190 4976febbeb60875e5bde9e0abbd9e0c1 324 Gene3D G3DSA:3.40.50.2300 166 312 7.9E-41 T 11-11-2016 vm_RS08190 4976febbeb60875e5bde9e0abbd9e0c1 324 Gene3D G3DSA:3.40.50.2300 24 165 1.5E-35 T 11-11-2016 vm_RS08190 4976febbeb60875e5bde9e0abbd9e0c1 324 Pfam PF13407 Periplasmic binding protein domain 26 296 1.3E-59 T 11-11-2016 IPR025997 Periplasmic binding protein vm_RS08385 a6be360cbd1427e081602b644e807270 717 SUPERFAMILY SSF53448 132 420 3.71E-24 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS08385 a6be360cbd1427e081602b644e807270 717 Pfam PF13506 Glycosyl transferase family 21 201 378 1.3E-11 T 11-11-2016 IPR025993 Ceramide glucosyltransferase GO:0016757 KEGG: 00600+2.4.1.80|MetaCyc: PWY-5129|Reactome: R-HSA-1660662 vm_RS08385 a6be360cbd1427e081602b644e807270 717 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 1 635 45.146 T 11-11-2016 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 vm_RS16930 402e529c5c34dd1fc2c47fd7a431d8e3 96 SUPERFAMILY SSF50249 1 90 9.71E-26 T 11-11-2016 IPR012340 Nucleic acid-binding, OB-fold vm_RS16930 402e529c5c34dd1fc2c47fd7a431d8e3 96 ProSitePatterns PS01175 Ribonuclease II family signature. 2 26 - T 11-11-2016 IPR022966 Ribonuclease II/R, conserved site vm_RS16930 402e529c5c34dd1fc2c47fd7a431d8e3 96 Pfam PF00773 RNB domain 1 34 1.7E-13 T 11-11-2016 vm_RS09625 b22eb8fbbf16fc462b004264ef2c2e54 723 SUPERFAMILY SSF56935 41 430 6.23E-89 T 11-11-2016 vm_RS09625 b22eb8fbbf16fc462b004264ef2c2e54 723 SUPERFAMILY SSF56935 461 723 6.23E-89 T 11-11-2016 vm_RS09625 b22eb8fbbf16fc462b004264ef2c2e54 723 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 56 723 8.1E-83 T 11-11-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 vm_RS09625 b22eb8fbbf16fc462b004264ef2c2e54 723 Pfam PF07715 TonB-dependent Receptor Plug Domain 55 157 6.6E-18 T 11-11-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 vm_RS09625 b22eb8fbbf16fc462b004264ef2c2e54 723 Gene3D G3DSA:2.170.130.10 33 159 4.8E-27 T 11-11-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 vm_RS09625 b22eb8fbbf16fc462b004264ef2c2e54 723 Gene3D G3DSA:2.40.170.20 160 723 4.4E-67 T 11-11-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 vm_RS09115 fc7d24e59e3560ed22cc093e3d68d4a9 415 Gene3D G3DSA:1.20.1090.10 188 381 4.9E-42 T 11-11-2016 vm_RS09115 fc7d24e59e3560ed22cc093e3d68d4a9 415 Gene3D G3DSA:3.40.50.1970 1 179 2.9E-47 T 11-11-2016 vm_RS09115 fc7d24e59e3560ed22cc093e3d68d4a9 415 SUPERFAMILY SSF56796 1 380 1.31E-88 T 11-11-2016 vm_RS09115 fc7d24e59e3560ed22cc093e3d68d4a9 415 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 372 1.0E-88 T 11-11-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 vm_RS02940 000b033560bc97e5285a02c5a800d264 106 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 21 104 5.0E-30 T 11-11-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 vm_RS02940 000b033560bc97e5285a02c5a800d264 106 Pfam PF04999 Cell division protein FtsL 9 104 3.1E-35 T 11-11-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 vm_RS02940 000b033560bc97e5285a02c5a800d264 106 Hamap MF_00910 Cell division protein FtsL [ftsL]. 20 103 15.872 T 11-11-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 vm_RS10130 397026c8b1c95a870adcc20b9cf6e664 163 Pfam PF02674 Colicin V production protein 4 142 5.8E-36 T 11-11-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 vm_RS15495 3df3165a91611eec01b39a4605d6573c 217 SUPERFAMILY SSF51391 177 211 3.4E-5 T 11-11-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 vm_RS15495 3df3165a91611eec01b39a4605d6573c 217 Gene3D G3DSA:3.20.20.70 168 211 6.7E-5 T 11-11-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 vm_RS08655 60245e67d169bcef4ead8194fd92d69d 342 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 53 330 1.4E-75 T 11-11-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 vm_RS08655 60245e67d169bcef4ead8194fd92d69d 342 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 342 133.355 T 11-11-2016 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 vm_RS08655 60245e67d169bcef4ead8194fd92d69d 342 SUPERFAMILY SSF53187 9 329 7.61E-79 T 11-11-2016 vm_RS08655 60245e67d169bcef4ead8194fd92d69d 342 Gene3D G3DSA:3.40.630.10 50 232 2.1E-11 T 11-11-2016 vm_RS08655 60245e67d169bcef4ead8194fd92d69d 342 PIRSF PIRSF017020 4 336 1.1E-121 T 11-11-2016 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96 vm_RS03315 bc2152d2325a5d7fc9a0c6398339f7b2 102 Gene3D G3DSA:1.10.10.710 20 87 1.8E-24 T 11-11-2016 IPR009813 Uncharacterised protein family YebG vm_RS03315 bc2152d2325a5d7fc9a0c6398339f7b2 102 Pfam PF07130 YebG protein 1 72 2.0E-31 T 11-11-2016 IPR009813 Uncharacterised protein family YebG vm_RS02720 71e79066c034f37ff4a44b5cc25964c4 545 TIGRFAM TIGR00337 PyrG: CTP synthase 2 535 2.0E-259 T 11-11-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 vm_RS02720 71e79066c034f37ff4a44b5cc25964c4 545 Pfam PF00117 Glutamine amidotransferase class-I 301 535 2.8E-62 T 11-11-2016 IPR017926 Glutamine amidotransferase vm_RS02720 71e79066c034f37ff4a44b5cc25964c4 545 Gene3D G3DSA:3.40.50.880 288 540 1.9E-98 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS02720 71e79066c034f37ff4a44b5cc25964c4 545 Gene3D G3DSA:3.40.50.300 1 280 1.4E-133 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02720 71e79066c034f37ff4a44b5cc25964c4 545 Hamap MF_01227 CTP synthase [pyrG]. 3 540 51.226 T 11-11-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 vm_RS02720 71e79066c034f37ff4a44b5cc25964c4 545 SUPERFAMILY SSF52540 3 269 6.2E-122 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS02720 71e79066c034f37ff4a44b5cc25964c4 545 Pfam PF06418 CTP synthase N-terminus 5 265 2.6E-125 T 11-11-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 vm_RS02720 71e79066c034f37ff4a44b5cc25964c4 545 SUPERFAMILY SSF52317 289 540 1.41E-87 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS00195 8b0330c080e6a8e37024dfd198349e67 158 Pfam PF04361 Protein of unknown function (DUF494) 2 158 3.2E-59 T 11-11-2016 IPR007456 Smg vm_RS00195 8b0330c080e6a8e37024dfd198349e67 158 Hamap MF_00598 Protein Smg [smg]. 2 158 32.953 T 11-11-2016 IPR007456 Smg vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 SUPERFAMILY SSF53850 24 342 3.64E-95 T 11-11-2016 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 PIRSF PIRSF019574 1 345 1.2E-125 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 Pfam PF13416 Bacterial extracellular solute-binding protein 40 311 1.1E-42 T 11-11-2016 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 146 160 2.8E-87 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 120 136 2.8E-87 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 245 264 2.8E-87 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 46 67 2.8E-87 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 89 102 2.8E-87 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 164 183 2.8E-87 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 73 87 2.8E-87 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 30 46 2.8E-87 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 201 220 2.8E-87 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 290 316 2.8E-87 T 11-11-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 Gene3D G3DSA:3.40.190.10 268 312 4.1E-64 T 11-11-2016 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 Gene3D G3DSA:3.40.190.10 23 129 4.1E-64 T 11-11-2016 vm_RS07645 d5b056d5dc5bbdf77a0d7a5b6e914dc7 345 Gene3D G3DSA:3.40.190.10 131 267 1.6E-23 T 11-11-2016 vm_RS03260 4495b309af4ecdff7d25d8d844940fe5 380 Pfam PF02417 Chromate transporter 3 168 2.7E-32 T 11-11-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 vm_RS03260 4495b309af4ecdff7d25d8d844940fe5 380 Pfam PF02417 Chromate transporter 211 372 2.0E-33 T 11-11-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 vm_RS03260 4495b309af4ecdff7d25d8d844940fe5 380 TIGRFAM TIGR00937 2A51: chromate efflux transporter 8 374 6.6E-88 T 11-11-2016 IPR014047 Chromate transporter, long chain vm_RS03260 4495b309af4ecdff7d25d8d844940fe5 380 PIRSF PIRSF004810 1 380 4.9E-112 T 11-11-2016 IPR014047 Chromate transporter, long chain vm_RS02575 b20209aef8c83b633b4b59fe55eaf409 102 SUPERFAMILY SSF102829 6 95 1.57E-24 T 11-11-2016 IPR007838 Cell division protein ZapA-like vm_RS02575 b20209aef8c83b633b4b59fe55eaf409 102 Pfam PF05164 Cell division protein ZapA 6 89 3.6E-20 T 11-11-2016 IPR007838 Cell division protein ZapA-like vm_RS00975 519b7541454c7ff4c2c3c469d941b39b 560 SUPERFAMILY SSF56112 43 186 1.35E-12 T 11-11-2016 IPR011009 Protein kinase-like domain vm_RS00975 519b7541454c7ff4c2c3c469d941b39b 560 Gene3D G3DSA:1.10.510.10 109 216 3.3E-8 T 11-11-2016 vm_RS05285 f0a29a2a649feffa11eabba1a667c9ce 453 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 260 5.7E-86 T 11-11-2016 IPR004681 TRAP transporter permease protein GO:0016021 vm_RS05285 f0a29a2a649feffa11eabba1a667c9ce 453 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 437 4.0E-116 T 11-11-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit vm_RS00280 5cb2446496da9504e284f8efae1e4754 126 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 8 119 2.5E-23 T 11-11-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 vm_RS00280 5cb2446496da9504e284f8efae1e4754 126 TIGRFAM TIGR00494 crcB: protein CrcB 9 120 1.4E-27 T 11-11-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 vm_RS00280 5cb2446496da9504e284f8efae1e4754 126 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 6 124 18.967 T 11-11-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 vm_RS16570 ff57b17d6da662b286aeba4d05d025ae 186 SUPERFAMILY SSF53633 3 185 7.2E-35 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS16570 ff57b17d6da662b286aeba4d05d025ae 186 Gene3D G3DSA:3.40.1160.10 40 184 4.8E-29 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS16570 ff57b17d6da662b286aeba4d05d025ae 186 Pfam PF00696 Amino acid kinase family 36 183 2.5E-27 T 11-11-2016 IPR001048 Aspartate/glutamate/uridylate kinase vm_RS06430 8d31bd04607ae9e20c1e96f00cc611b0 98 SUPERFAMILY SSF54909 1 98 7.69E-33 T 11-11-2016 IPR011008 Dimeric alpha-beta barrel vm_RS06430 8d31bd04607ae9e20c1e96f00cc611b0 98 Gene3D G3DSA:3.30.70.1060 1 98 3.0E-39 T 11-11-2016 vm_RS06430 8d31bd04607ae9e20c1e96f00cc611b0 98 Pfam PF03795 YCII-related domain 1 95 2.3E-31 T 11-11-2016 IPR005545 YCII-related vm_RS01120 552e0cd2d6bcc9f82cdf5f70df1e9bb6 329 Pfam PF02653 Branched-chain amino acid transport system / permease component 50 316 2.8E-45 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 vm_RS12280 d19037f2a525dfb78fb1c787d0ab067e 189 Pfam PF04972 BON domain 122 188 3.0E-15 T 11-11-2016 IPR007055 BON domain vm_RS12280 d19037f2a525dfb78fb1c787d0ab067e 189 Pfam PF04972 BON domain 46 112 7.6E-10 T 11-11-2016 IPR007055 BON domain vm_RS12280 d19037f2a525dfb78fb1c787d0ab067e 189 SMART SM00749 50 113 13.0 T 11-11-2016 IPR014004 Transport-associated and nodulation domain, bacteria vm_RS12280 d19037f2a525dfb78fb1c787d0ab067e 189 SMART SM00749 127 189 1.2 T 11-11-2016 IPR014004 Transport-associated and nodulation domain, bacteria vm_RS01035 d563b2798099501a2725b56655a9cd08 480 Pfam PF13250 Domain of unknown function (DUF4041) 201 256 7.1E-16 T 11-11-2016 IPR025280 Domain of unknown function DUF4041 vm_RS01035 d563b2798099501a2725b56655a9cd08 480 SMART SM00974 371 454 5.3E-32 T 11-11-2016 IPR018306 Bacteriophage T5, Orf172 DNA-binding vm_RS01035 d563b2798099501a2725b56655a9cd08 480 Pfam PF13455 Meiotically up-regulated gene 113 377 454 1.4E-14 T 11-11-2016 vm_RS00985 44ec2b192ae53e090a71adcd8f4cc03e 277 Gene3D G3DSA:3.40.50.410 12 96 6.6E-7 T 11-11-2016 IPR002035 von Willebrand factor, type A vm_RS00985 44ec2b192ae53e090a71adcd8f4cc03e 277 Gene3D G3DSA:3.40.50.410 130 189 6.6E-7 T 11-11-2016 IPR002035 von Willebrand factor, type A vm_RS00985 44ec2b192ae53e090a71adcd8f4cc03e 277 SUPERFAMILY SSF53300 16 214 7.05E-14 T 11-11-2016 IPR002035 von Willebrand factor, type A vm_RS06790 c65bac449487167e0e10a7d4e2551ace 478 Gene3D G3DSA:3.40.50.720 1 224 3.1E-25 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS06790 c65bac449487167e0e10a7d4e2551ace 478 Pfam PF13460 NAD(P)H-binding 8 151 3.4E-11 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS06790 c65bac449487167e0e10a7d4e2551ace 478 SUPERFAMILY SSF51735 1 295 1.31E-37 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS06790 c65bac449487167e0e10a7d4e2551ace 478 Pfam PF11066 Protein of unknown function (DUF2867) 335 467 1.1E-13 T 11-11-2016 IPR021295 Protein of unknown function DUF2867 vm_RS08465 1e2af24883ae55168521565e333be9dd 224 Pfam PF11201 Protein of unknown function (DUF2982) 67 216 6.4E-61 T 11-11-2016 IPR021367 Protein of unknown function DUF2982 vm_RS08935 9f9c7a2c301c46f4411a732aadffcfc8 218 Pfam PF10014 2OG-Fe dioxygenase 24 208 1.3E-50 T 11-11-2016 IPR018724 2OG-Fe dioxygenase vm_RS06630 43d6b519e015c019d7790683be0cece6 88 Pfam PF06945 Protein of unknown function (DUF1289) 11 56 2.0E-19 T 11-11-2016 IPR010710 Protein of unknown function DUF1289 vm_RS02495 c6f7155f63a0b164c0879e02ff2726e2 263 Pfam PF04784 Protein of unknown function, DUF547 87 198 3.8E-25 T 11-11-2016 IPR006869 Domain of unknown function DUF547 vm_RS13270 c9f759f7b8c8af983522ce02b3adb095 127 Pfam PF09834 Predicted membrane protein (DUF2061) 66 116 8.9E-22 T 11-11-2016 IPR018638 Domain of unknown function DUF2061, membrane vm_RS13270 c9f759f7b8c8af983522ce02b3adb095 127 Pfam PF09834 Predicted membrane protein (DUF2061) 1 52 4.3E-22 T 11-11-2016 IPR018638 Domain of unknown function DUF2061, membrane vm_RS05430 78815b221dbd81e5a1c68a70bb2c1b70 400 Gene3D G3DSA:3.40.50.2000 162 345 2.8E-29 T 11-11-2016 vm_RS05430 78815b221dbd81e5a1c68a70bb2c1b70 400 SUPERFAMILY SSF53756 7 373 9.42E-72 T 11-11-2016 vm_RS05430 78815b221dbd81e5a1c68a70bb2c1b70 400 Pfam PF13439 Glycosyltransferase Family 4 19 176 6.4E-18 T 11-11-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 vm_RS05430 78815b221dbd81e5a1c68a70bb2c1b70 400 Pfam PF00534 Glycosyl transferases group 1 186 343 2.0E-32 T 11-11-2016 IPR001296 Glycosyl transferase, family 1 vm_RS03630 00ef557fe4a012683b9c60b0ca0b2941 280 Pfam PF01148 Cytidylyltransferase family 2 280 8.5E-73 T 11-11-2016 vm_RS03630 00ef557fe4a012683b9c60b0ca0b2941 280 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 238 264 - T 11-11-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981 vm_RS02195 fff84f445b1e0279d2333db907d638a8 1254 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 917 1253 5.7E-63 T 11-11-2016 IPR007452 Translocation and assembly module TamB vm_RS10890 4879f71f239b4a1c021a7c3f23260048 134 Pfam PF13356 Domain of unknown function (DUF4102) 8 95 9.5E-22 T 11-11-2016 IPR025166 Domain of unknown function DUF4102 vm_RS07310 12caa121ff3b9fb605b56b68ffced1f5 232 Gene3D G3DSA:1.10.3720.10 16 228 1.5E-25 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS07310 12caa121ff3b9fb605b56b68ffced1f5 232 SUPERFAMILY SSF161098 8 222 1.7E-31 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS07310 12caa121ff3b9fb605b56b68ffced1f5 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 221 6.4E-10 T 11-11-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 vm_RS04775 c73c59cbd5a49b652cb5a06e0acd993f 397 Pfam PF01627 Hpt domain 301 367 9.7E-9 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS04775 c73c59cbd5a49b652cb5a06e0acd993f 397 Gene3D G3DSA:1.20.120.160 280 383 3.6E-22 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS04775 c73c59cbd5a49b652cb5a06e0acd993f 397 SUPERFAMILY SSF47226 277 366 6.28E-16 T 11-11-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 vm_RS09695 5bad207cd1c744ae0c17288760d1cf9a 480 Pfam PF13455 Meiotically up-regulated gene 113 377 454 1.4E-14 T 11-11-2016 vm_RS09695 5bad207cd1c744ae0c17288760d1cf9a 480 Pfam PF13250 Domain of unknown function (DUF4041) 201 256 7.1E-16 T 11-11-2016 IPR025280 Domain of unknown function DUF4041 vm_RS09695 5bad207cd1c744ae0c17288760d1cf9a 480 SMART SM00974 371 454 5.3E-32 T 11-11-2016 IPR018306 Bacteriophage T5, Orf172 DNA-binding vm_RS05190 24ffb2fcd695ed90ab2e9f8116306a96 401 TIGRFAM TIGR00804 nupC: nucleoside transporter, NupC family 1 397 3.0E-138 T 11-11-2016 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial GO:0005337|GO:0016020|GO:1901642 Reactome: R-HSA-83936 vm_RS05190 24ffb2fcd695ed90ab2e9f8116306a96 401 Pfam PF01773 Na+ dependent nucleoside transporter N-terminus 5 78 4.2E-25 T 11-11-2016 IPR002668 Concentrative nucleoside transporter N-terminal domain Reactome: R-HSA-83936 vm_RS05190 24ffb2fcd695ed90ab2e9f8116306a96 401 Pfam PF07662 Na+ dependent nucleoside transporter C-terminus 191 398 4.6E-73 T 11-11-2016 IPR011657 Concentrative nucleoside transporter C-terminal domain Reactome: R-HSA-83936 vm_RS05190 24ffb2fcd695ed90ab2e9f8116306a96 401 Pfam PF07670 Nucleoside recognition 89 184 3.0E-7 T 11-11-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 vm_RS11005 8a509d81ef88391f2787dded6c123a85 182 Gene3D G3DSA:1.20.141.10 13 175 2.2E-51 T 11-11-2016 vm_RS11005 8a509d81ef88391f2787dded6c123a85 182 Pfam PF05838 Glycosyl hydrolase 108 23 102 1.3E-23 T 11-11-2016 IPR008565 Protein of unknown function DUF847 vm_RS11005 8a509d81ef88391f2787dded6c123a85 182 SUPERFAMILY SSF53955 30 178 4.22E-44 T 11-11-2016 IPR023346 Lysozyme-like domain vm_RS11005 8a509d81ef88391f2787dded6c123a85 182 Pfam PF09374 Predicted Peptidoglycan domain 106 172 3.6E-15 T 11-11-2016 IPR018537 Peptidoglycan binding domain vm_RS01295 8a509d81ef88391f2787dded6c123a85 182 Gene3D G3DSA:1.20.141.10 13 175 2.2E-51 T 11-11-2016 vm_RS01295 8a509d81ef88391f2787dded6c123a85 182 Pfam PF05838 Glycosyl hydrolase 108 23 102 1.3E-23 T 11-11-2016 IPR008565 Protein of unknown function DUF847 vm_RS01295 8a509d81ef88391f2787dded6c123a85 182 SUPERFAMILY SSF53955 30 178 4.22E-44 T 11-11-2016 IPR023346 Lysozyme-like domain vm_RS01295 8a509d81ef88391f2787dded6c123a85 182 Pfam PF09374 Predicted Peptidoglycan domain 106 172 3.6E-15 T 11-11-2016 IPR018537 Peptidoglycan binding domain vm_RS07915 639d266b3fdd5a8f3be6bc867f6848ef 387 Pfam PF03738 Glutathionylspermidine synthase preATP-grasp 12 386 1.7E-156 T 11-11-2016 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain vm_RS07915 639d266b3fdd5a8f3be6bc867f6848ef 387 SUPERFAMILY SSF52440 174 280 2.04E-38 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS07915 639d266b3fdd5a8f3be6bc867f6848ef 387 SUPERFAMILY SSF56059 267 385 9.18E-88 T 11-11-2016 vm_RS07915 639d266b3fdd5a8f3be6bc867f6848ef 387 SUPERFAMILY SSF56059 1 169 9.18E-88 T 11-11-2016 vm_RS08320 826b391e3caa991453dfba0e2f566a7f 417 Pfam PF03222 Tryptophan/tyrosine permease family 28 413 1.2E-16 T 11-11-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 vm_RS06175 1e5e8e54cf3db6e2bbd8d37ddc686179 314 Pfam PF00482 Type II secretion system (T2SS), protein F 174 301 2.1E-22 T 11-11-2016 IPR018076 Type II secretion system F domain vm_RS14865 24f0b3794cbb3299c5d6245e1f756e09 129 Pfam PF03899 ATP synthase I chain 15 111 9.5E-18 T 11-11-2016 IPR005598 ATP synthase protein I vm_RS04545 b8ee9c7a32d5d0867bdcf7b9eedaa127 76 SUPERFAMILY SSF50037 4 74 1.83E-19 T 11-11-2016 IPR008988 Transcriptional repressor, C-terminal vm_RS04545 b8ee9c7a32d5d0867bdcf7b9eedaa127 76 Pfam PF04023 FeoA domain 1 74 7.0E-18 T 11-11-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 vm_RS04545 b8ee9c7a32d5d0867bdcf7b9eedaa127 76 SMART SM00899 1 74 1.8E-22 T 11-11-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 vm_RS00600 839223585ba8e490bff098975377cdc9 239 SUPERFAMILY SSF56784 9 238 2.18E-36 T 11-11-2016 IPR023214 HAD-like domain vm_RS00600 839223585ba8e490bff098975377cdc9 239 Pfam PF13419 Haloacid dehalogenase-like hydrolase 15 206 8.7E-13 T 11-11-2016 IPR023214 HAD-like domain vm_RS00600 839223585ba8e490bff098975377cdc9 239 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 116 200 4.3E-9 T 11-11-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 vm_RS00600 839223585ba8e490bff098975377cdc9 239 Gene3D G3DSA:3.40.50.1000 107 238 5.3E-29 T 11-11-2016 IPR023214 HAD-like domain vm_RS05605 600f90355c435d825edb9ec18c7f012e 179 SUPERFAMILY SSF53474 2 176 6.51E-6 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS05605 600f90355c435d825edb9ec18c7f012e 179 Hamap MF_01047 UPF0227 protein YcfP [ycfP]. 1 178 49.6 T 11-11-2016 IPR022987 Uncharacterised protein family UPF0227 vm_RS05605 600f90355c435d825edb9ec18c7f012e 179 Pfam PF05728 Uncharacterised protein family (UPF0227) 1 177 5.7E-71 T 11-11-2016 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA vm_RS03800 ad48145b47b3606517bccf1d3e6b28c4 146 Pfam PF04214 Protein of unknown function, DUF 48 117 2.8E-32 T 11-11-2016 IPR007332 Protein of unknown function DUF411 vm_RS04380 a8be505432acd5ae1c1900ccad3b4e78 176 Pfam PF04315 Elongation factor P hydroxylase 11 172 5.0E-74 T 11-11-2016 IPR007411 Elongation factor P hydroxylase vm_RS00150 dec4f40b57c14d289a642d675fcf7814 213 Pfam PF03006 Haemolysin-III related 6 203 1.0E-37 T 11-11-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 vm_RS00150 dec4f40b57c14d289a642d675fcf7814 213 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 9 210 1.9E-70 T 11-11-2016 IPR005744 Hly-III GO:0016021|GO:0019835 vm_RS13775 68b2b09ae19a72e7757f1f5f9d5fef9d 91 SUPERFAMILY SSF75169 1 91 2.06E-21 T 11-11-2016 IPR027396 DsrEFH-like vm_RS13775 68b2b09ae19a72e7757f1f5f9d5fef9d 91 Pfam PF04077 DsrH like protein 9 87 2.6E-21 T 11-11-2016 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 vm_RS13775 68b2b09ae19a72e7757f1f5f9d5fef9d 91 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 2 91 1.2E-23 T 11-11-2016 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 vm_RS13775 68b2b09ae19a72e7757f1f5f9d5fef9d 91 Gene3D G3DSA:3.40.1260.10 1 89 6.2E-22 T 11-11-2016 IPR027396 DsrEFH-like vm_RS05150 d8ab81d6ec4097a9e5dff83e0414ce66 105 SUPERFAMILY SSF158757 8 85 2.22E-36 T 11-11-2016 IPR023163 SMc04008-like domain vm_RS05150 d8ab81d6ec4097a9e5dff83e0414ce66 105 Pfam PF06844 Protein of unknown function (DUF1244) 35 101 3.1E-36 T 11-11-2016 IPR023163 SMc04008-like domain vm_RS05150 d8ab81d6ec4097a9e5dff83e0414ce66 105 Gene3D G3DSA:1.10.3340.10 6 92 2.1E-44 T 11-11-2016 IPR023163 SMc04008-like domain vm_RS03670 ac5941503e4fba7a38e3146a90711be4 381 SUPERFAMILY SSF53756 6 300 1.76E-28 T 11-11-2016 vm_RS03670 ac5941503e4fba7a38e3146a90711be4 381 SUPERFAMILY SSF53756 327 378 1.76E-28 T 11-11-2016 vm_RS03670 ac5941503e4fba7a38e3146a90711be4 381 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 3 376 5.8E-142 T 11-11-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 vm_RS03670 ac5941503e4fba7a38e3146a90711be4 381 Pfam PF02684 Lipid-A-disaccharide synthetase 7 373 4.0E-131 T 11-11-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 vm_RS03670 ac5941503e4fba7a38e3146a90711be4 381 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 4 378 43.086 T 11-11-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622 vm_RS03670 ac5941503e4fba7a38e3146a90711be4 381 Gene3D G3DSA:3.40.50.2000 161 343 7.8E-4 T 11-11-2016 vm_RS11800 9f4cb7ee86fac14f5176f886ba3ce2cd 382 Pfam PF02690 Na+/Pi-cotransporter 30 150 3.6E-23 T 11-11-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 vm_RS11800 9f4cb7ee86fac14f5176f886ba3ce2cd 382 Pfam PF02690 Na+/Pi-cotransporter 218 325 9.7E-19 T 11-11-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 vm_RS07745 564d21150c5a00e939655c081519ee90 317 Pfam PF03547 Membrane transport protein 165 308 4.9E-13 T 11-11-2016 IPR004776 Membrane transport protein GO:0016021|GO:0055085 vm_RS07745 564d21150c5a00e939655c081519ee90 317 Pfam PF03547 Membrane transport protein 7 153 1.1E-14 T 11-11-2016 IPR004776 Membrane transport protein GO:0016021|GO:0055085 vm_RS14325 b75724dfac7dd9fa0ba9e9fda00271a2 379 SUPERFAMILY SSF53756 58 378 1.62E-32 T 11-11-2016 vm_RS14325 b75724dfac7dd9fa0ba9e9fda00271a2 379 Pfam PF13439 Glycosyltransferase Family 4 59 179 4.4E-8 T 11-11-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 vm_RS08915 4df69b1d389876b747eadfbb65f7d6fc 109 Pfam PF11872 Protein of unknown function (DUF3392) 3 106 7.3E-40 T 11-11-2016 IPR021813 Protein of unknown function DUF3392 vm_RS07690 b96151447a64cf1b9e81e93cbfe1b0a6 212 PIRSF PIRSF006324 1 210 1.3E-53 T 11-11-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 vm_RS07690 b96151447a64cf1b9e81e93cbfe1b0a6 212 Pfam PF01810 LysE type translocator 15 208 6.4E-32 T 11-11-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 vm_RS14915 9aa8ed724cccaa9b748c8d8dd0bbac29 344 Pfam PF14280 Domain of unknown function (DUF4365) 13 139 2.3E-24 T 11-11-2016 IPR025375 Domain of unknown function DUF4365 vm_RS06910 3b567b5d0916de3c585d48f23b20939c 382 Pfam PF12698 ABC-2 family transporter protein 20 368 2.5E-41 T 11-11-2016 vm_RS04390 feabe841f2e3e0d35f7755ccaf9c324a 175 Pfam PF03358 NADPH-dependent FMN reductase 1 132 1.7E-23 T 11-11-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 vm_RS04390 feabe841f2e3e0d35f7755ccaf9c324a 175 SUPERFAMILY SSF52218 1 173 2.68E-33 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS04390 feabe841f2e3e0d35f7755ccaf9c324a 175 Gene3D G3DSA:3.40.50.360 1 173 7.7E-32 T 11-11-2016 IPR029039 Flavoprotein-like domain vm_RS08635 f6a978eb1d47123dfc068b3a003d987d 116 Pfam PF11042 Protein of unknown function (DUF2750) 13 113 3.7E-33 T 11-11-2016 IPR021284 Protein of unknown function DUF2750 vm_RS12015 fc223e93a14e7604d5ad83a6d8322b73 209 Pfam PF01728 FtsJ-like methyltransferase 31 207 1.5E-56 T 11-11-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 vm_RS12015 fc223e93a14e7604d5ad83a6d8322b73 209 PIRSF PIRSF005461 1 209 3.2E-79 T 11-11-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 vm_RS12015 fc223e93a14e7604d5ad83a6d8322b73 209 Gene3D G3DSA:3.40.50.150 1 208 5.2E-72 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS12015 fc223e93a14e7604d5ad83a6d8322b73 209 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 11 207 29.17 T 11-11-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 vm_RS12015 fc223e93a14e7604d5ad83a6d8322b73 209 SUPERFAMILY SSF53335 30 209 4.53E-46 T 11-11-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase vm_RS05155 1f640773b0a6927b1304f3f9edacab3d 162 Pfam PF04170 NlpE N-terminal domain 67 152 4.4E-30 T 11-11-2016 IPR007298 Copper resistance lipoprotein NlpE vm_RS02335 90ca8dfeee5dc8d89e01f93ef3cf40ee 263 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 10 261 1.2E-98 T 11-11-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria vm_RS02335 90ca8dfeee5dc8d89e01f93ef3cf40ee 263 Pfam PF02405 Permease MlaE 47 259 2.4E-75 T 11-11-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 vm_RS08860 953fd42adeaf9aed904ee16275397d6f 153 ProDom PD049902 METHYLTRANSFERASE TRANSFERASE PRECURSOR ISOPRENYLCYSTEINE SIGNAL CARBOXYL TRANSMEMBRANE MEMBRANE FAMILY XCC3183 108 153 9.0E-18 T 11-11-2016 vm_RS08860 953fd42adeaf9aed904ee16275397d6f 153 Pfam PF04191 Phospholipid methyltransferase 43 142 6.5E-10 T 11-11-2016 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 vm_RS10025 2adc8471a4d8915957444356ebaee382 338 Gene3D G3DSA:3.40.50.300 31 198 9.0E-43 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10025 2adc8471a4d8915957444356ebaee382 338 SUPERFAMILY SSF52540 10 231 2.33E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10025 2adc8471a4d8915957444356ebaee382 338 SUPERFAMILY SSF52540 266 312 2.33E-42 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS10025 2adc8471a4d8915957444356ebaee382 338 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 50 182 3.1E-62 T 11-11-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 vm_RS10025 2adc8471a4d8915957444356ebaee382 338 PIRSF PIRSF002849 1 338 4.4E-124 T 11-11-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted vm_RS10025 2adc8471a4d8915957444356ebaee382 338 Gene3D G3DSA:1.10.8.300 219 334 1.1E-38 T 11-11-2016 vm_RS03280 e3a60d1c8f927b548114a0b6130c9517 183 SUPERFAMILY SSF110857 1 123 7.59E-18 T 11-11-2016 IPR013024 Butirosin biosynthesis, BtrG-like vm_RS03280 e3a60d1c8f927b548114a0b6130c9517 183 Gene3D G3DSA:3.10.490.10 1 140 6.6E-8 T 11-11-2016 IPR013024 Butirosin biosynthesis, BtrG-like vm_RS03280 e3a60d1c8f927b548114a0b6130c9517 183 Pfam PF06094 Gamma-glutamyl cyclotransferase, AIG2-like 3 108 1.2E-7 T 11-11-2016 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like vm_RS09720 7675fbbfc43e11454d534953cbe4311b 695 Pfam PF09614 CRISPR-associated protein (Cas_Csy2) 436 567 2.4E-11 T 11-11-2016 IPR013398 CRISPR-associated protein Csy2 vm_RS05915 0a5201a9110f26066857cdb263a7c9c0 150 Hamap MF_00914 L-alanine exporter AlaE [alaE]. 2 145 31.839 T 11-11-2016 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 vm_RS05915 0a5201a9110f26066857cdb263a7c9c0 150 ProDom PD090021 MEMBRANE YGAW TRANSMEMBRANE INNER VV2263 Y3636 VC1828 VP1070 15 142 6.0E-68 T 11-11-2016 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 vm_RS05915 0a5201a9110f26066857cdb263a7c9c0 150 Pfam PF06610 L-alanine exporter 8 142 1.9E-67 T 11-11-2016 IPR010574 L-alanine exporter AlaE GO:0016021|GO:0034639 vm_RS04225 70969b8ef37504c929bc9745b8d17980 302 SUPERFAMILY SSF54909 2 297 5.72E-96 T 11-11-2016 IPR011008 Dimeric alpha-beta barrel vm_RS04225 70969b8ef37504c929bc9745b8d17980 302 Pfam PF04261 Dyp-type peroxidase family 5 293 8.3E-93 T 11-11-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 vm_RS04225 70969b8ef37504c929bc9745b8d17980 302 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 5 293 5.3E-88 T 11-11-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 vm_RS01770 9404199c0f5e93d864bb183c9155ca8c 194 Pfam PF05137 Fimbrial assembly protein (PilN) 102 178 2.3E-13 T 11-11-2016 IPR007813 Fimbrial assembly PilN vm_RS05745 b8b369182dbef1432353f576502ada26 513 Pfam PF11840 Protein of unknown function (DUF3360) 9 513 3.8E-270 T 11-11-2016 IPR021794 Protein of unknown function DUF3360 vm_RS04220 876acfe674bd6672c13b8597bcb14fdc 154 Pfam PF11143 Protein of unknown function (DUF2919) 3 147 1.2E-52 T 11-11-2016 IPR021318 Protein of unknown function DUF2919 vm_RS09255 6b0a79633a87adea276dc62fb689fe0a 425 Pfam PF01593 Flavin containing amine oxidoreductase 10 302 2.7E-19 T 11-11-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 vm_RS09255 6b0a79633a87adea276dc62fb689fe0a 425 SUPERFAMILY SSF51905 382 412 4.32E-50 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS09255 6b0a79633a87adea276dc62fb689fe0a 425 SUPERFAMILY SSF51905 1 299 4.32E-50 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS09255 6b0a79633a87adea276dc62fb689fe0a 425 Gene3D G3DSA:3.50.50.60 1 117 2.8E-29 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS09255 6b0a79633a87adea276dc62fb689fe0a 425 Gene3D G3DSA:3.50.50.60 200 298 2.8E-29 T 11-11-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 vm_RS10345 3a3ffea8c2fd76f90e3ebe0fabd0d143 156 Pfam PF07295 Zinc-ribbon containing domain 14 153 1.4E-49 T 11-11-2016 IPR009912 Zinc-ribbon containing domain vm_RS04715 f3634018aa880d107896a395a5d968a8 110 Pfam PF00462 Glutaredoxin 16 80 2.6E-16 T 11-11-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 vm_RS04715 f3634018aa880d107896a395a5d968a8 110 PIRSF PIRSF005894 1 107 7.1E-52 T 11-11-2016 IPR014434 Monothiol glutaredoxin vm_RS04715 f3634018aa880d107896a395a5d968a8 110 Gene3D G3DSA:3.40.30.10 7 102 1.6E-31 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS04715 f3634018aa880d107896a395a5d968a8 110 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 6.5E-46 T 11-11-2016 IPR004480 Monothiol glutaredoxin-related vm_RS04715 f3634018aa880d107896a395a5d968a8 110 SUPERFAMILY SSF52833 1 104 2.31E-33 T 11-11-2016 IPR012336 Thioredoxin-like fold vm_RS04195 08d3e06fafc474499cc9af4b75bc5250 224 SUPERFAMILY SSF55166 15 175 7.06E-22 T 11-11-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5658034 vm_RS04195 08d3e06fafc474499cc9af4b75bc5250 224 Pfam PF02557 D-alanyl-D-alanine carboxypeptidase 25 176 4.3E-35 T 11-11-2016 IPR003709 Peptidase M15B GO:0006508|GO:0008233 vm_RS07780 28c436d85bb0660d73ba887d5c30d7da 341 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 50 316 2.9E-28 T 11-11-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 vm_RS13005 f820acd822848dcea9233478da578865 162 SMART SM00731 12 161 1.2E-62 T 11-11-2016 IPR006640 SprT-like vm_RS13005 f820acd822848dcea9233478da578865 162 Hamap MF_00746 Protein SprT [sprT]. 8 161 41.818 T 11-11-2016 IPR023483 Uncharacterised protein family SprT vm_RS13005 f820acd822848dcea9233478da578865 162 Pfam PF10263 SprT-like family 24 159 1.7E-28 T 11-11-2016 IPR006640 SprT-like vm_RS04920 575874969adcd73328da0e3d7e37f531 404 SUPERFAMILY SSF52151 25 271 1.54E-36 T 11-11-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 vm_RS04920 575874969adcd73328da0e3d7e37f531 404 Pfam PF01734 Patatin-like phospholipase 29 198 1.6E-19 T 11-11-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 vm_RS12760 de0d2a3a4042d2ded6627df759090c48 732 Gene3D G3DSA:1.20.1250.20 553 729 3.8E-18 T 11-11-2016 vm_RS12760 de0d2a3a4042d2ded6627df759090c48 732 Pfam PF07690 Major Facilitator Superfamily 339 684 3.9E-29 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 vm_RS12760 de0d2a3a4042d2ded6627df759090c48 732 Gene3D G3DSA:1.20.1250.20 340 516 4.8E-17 T 11-11-2016 vm_RS12760 de0d2a3a4042d2ded6627df759090c48 732 SUPERFAMILY SSF103473 339 726 2.62E-43 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS10765 d34ac762f2df69c0f5a30a0efbedd735 214 SUPERFAMILY SSF158682 71 213 7.85E-28 T 11-11-2016 IPR029024 TerB-like vm_RS10765 d34ac762f2df69c0f5a30a0efbedd735 214 Pfam PF04391 Protein of unknown function (DUF533) 37 211 5.6E-65 T 11-11-2016 IPR007486 Inner membrane protein YebE vm_RS10765 d34ac762f2df69c0f5a30a0efbedd735 214 Gene3D G3DSA:1.10.3680.10 70 211 2.7E-29 T 11-11-2016 IPR029024 TerB-like vm_RS06460 575f9f7796bf1ef99761999448da081e 276 SUPERFAMILY SSF51735 2 262 3.8E-27 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS06460 575f9f7796bf1ef99761999448da081e 276 Gene3D G3DSA:3.40.50.720 1 178 6.3E-20 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS06460 575f9f7796bf1ef99761999448da081e 276 Pfam PF13460 NAD(P)H-binding 9 178 5.4E-14 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS05520 f955a54de62924b68544d7a64b7f9f74 258 SUPERFAMILY SSF47240 11 61 4.31E-74 T 11-11-2016 IPR009078 Ferritin-like superfamily vm_RS05520 f955a54de62924b68544d7a64b7f9f74 258 SUPERFAMILY SSF47240 109 255 4.31E-74 T 11-11-2016 IPR009078 Ferritin-like superfamily vm_RS05520 f955a54de62924b68544d7a64b7f9f74 258 Gene3D G3DSA:1.20.1260.10 109 255 6.3E-89 T 11-11-2016 IPR012347 Ferritin-related vm_RS05520 f955a54de62924b68544d7a64b7f9f74 258 Gene3D G3DSA:1.20.1260.10 8 61 6.3E-89 T 11-11-2016 IPR012347 Ferritin-related vm_RS05520 f955a54de62924b68544d7a64b7f9f74 258 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 9 252 1.4E-123 T 11-11-2016 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 vm_RS05520 f955a54de62924b68544d7a64b7f9f74 258 PIRSF PIRSF020736 2 257 1.7E-93 T 11-11-2016 IPR010386 tRNA-hydroxylase MiaE GO:0006400|GO:0045301 vm_RS00980 6b1c0926c824d5cf67fa18d85da89da8 245 Gene3D G3DSA:3.60.40.10 19 137 2.7E-4 T 11-11-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 vm_RS03485 5ea8ab4762811ff36d2509fcd0a79a9c 247 Pfam PF11101 Protein of unknown function (DUF2884) 21 245 2.1E-66 T 11-11-2016 IPR021307 Protein of unknown function DUF2884 vm_RS19170 d58bf4e2102331c77d1ba6725add5426 99 SUPERFAMILY SSF53738 2 78 9.92E-9 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS19170 d58bf4e2102331c77d1ba6725add5426 99 Gene3D G3DSA:3.40.120.10 1 78 1.3E-35 T 11-11-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS19170 d58bf4e2102331c77d1ba6725add5426 99 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 3 78 1.0E-7 T 11-11-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 vm_RS01625 debdc2c33aa6b1851b256574258d88ec 119 Pfam PF11333 Protein of unknown function (DUF3135) 14 93 2.8E-34 T 11-11-2016 IPR021482 Protein of unknown function DUF3135 vm_RS01095 43bb91703e3926d302432fb5e6fc78d9 433 Gene3D G3DSA:1.10.443.10 198 257 9.6E-22 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS01095 43bb91703e3926d302432fb5e6fc78d9 433 Gene3D G3DSA:1.10.443.10 297 428 9.6E-22 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS01095 43bb91703e3926d302432fb5e6fc78d9 433 Pfam PF00589 Phage integrase family 221 420 2.1E-14 T 11-11-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS01095 43bb91703e3926d302432fb5e6fc78d9 433 SUPERFAMILY SSF56349 300 431 1.08E-20 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS01095 43bb91703e3926d302432fb5e6fc78d9 433 SUPERFAMILY SSF56349 197 260 1.08E-20 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS10180 c3c03d3e716ddc2238cef02119763b10 528 SUPERFAMILY SSF51735 387 518 4.11E-16 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS10180 c3c03d3e716ddc2238cef02119763b10 528 Pfam PF00999 Sodium/hydrogen exchanger family 4 348 1.1E-34 T 11-11-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 vm_RS10180 c3c03d3e716ddc2238cef02119763b10 528 Pfam PF02254 TrkA-N domain 388 504 9.3E-21 T 11-11-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 vm_RS10180 c3c03d3e716ddc2238cef02119763b10 528 Gene3D G3DSA:3.40.50.720 380 526 2.0E-50 T 11-11-2016 IPR016040 NAD(P)-binding domain vm_RS07075 61ac1b7209425db6c2927dca8d0da706 417 SUPERFAMILY SSF101960 23 416 4.05E-89 T 11-11-2016 vm_RS07075 61ac1b7209425db6c2927dca8d0da706 417 Pfam PF01458 Uncharacterized protein family (UPF0051) 173 390 1.3E-60 T 11-11-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 vm_RS07075 61ac1b7209425db6c2927dca8d0da706 417 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 132 406 3.3E-72 T 11-11-2016 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 vm_RS19555 3542e4433273631966399ccfc5e50c40 164 Pfam PF00209 Sodium:neurotransmitter symporter family 4 162 2.2E-43 T 11-11-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 vm_RS19555 3542e4433273631966399ccfc5e50c40 164 SUPERFAMILY SSF161070 6 163 1.44E-52 T 11-11-2016 vm_RS10625 f746266fece9ca7baf89af65c0a1a479 258 PIRSF PIRSF029037 1 258 8.5E-115 T 11-11-2016 IPR016908 Uncharacterised conserved protein UCP029037 vm_RS10625 f746266fece9ca7baf89af65c0a1a479 258 Pfam PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) 1 256 1.9E-113 T 11-11-2016 IPR016908 Uncharacterised conserved protein UCP029037 vm_RS13075 5034399ef78067f2048661f77a3eb7be 143 Pfam PF14467 Domain of unknown function (DUF4426) 23 142 5.5E-47 T 11-11-2016 IPR025218 Domain of unknown function DUF4426 vm_RS07560 eec65e50e600526066820b1228ec7d36 206 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 9 186 7.1E-83 T 11-11-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO vm_RS07560 eec65e50e600526066820b1228ec7d36 206 Gene3D G3DSA:1.10.760.10 21 202 5.5E-35 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS07560 eec65e50e600526066820b1228ec7d36 206 SUPERFAMILY SSF46626 21 202 9.44E-29 T 11-11-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 Reactome: R-HSA-611105 vm_RS07560 eec65e50e600526066820b1228ec7d36 206 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 9 188 1.0E-82 T 11-11-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO vm_RS15015 6b5f565b9ddd310216c65d6fdf7f651f 180 Pfam PF05280 Flagellar transcriptional activator (FlhC) 18 174 7.3E-9 T 11-11-2016 IPR007944 Flagellar transcriptional activator FlhC GO:0003677|GO:0045893|GO:1902208 vm_RS15015 6b5f565b9ddd310216c65d6fdf7f651f 180 SUPERFAMILY SSF160930 10 172 2.88E-33 T 11-11-2016 vm_RS00040 9ce18514debae6f3f3e67da4456b8c68 418 SUPERFAMILY SSF53383 13 411 2.75E-61 T 11-11-2016 IPR015424 Pyridoxal phosphate-dependent transferase vm_RS00040 9ce18514debae6f3f3e67da4456b8c68 418 Gene3D G3DSA:3.90.1150.10 267 410 1.8E-18 T 11-11-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 vm_RS00040 9ce18514debae6f3f3e67da4456b8c68 418 Pfam PF00155 Aminotransferase class I and II 68 399 2.5E-26 T 11-11-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 vm_RS00040 9ce18514debae6f3f3e67da4456b8c68 418 Gene3D G3DSA:3.40.640.10 61 266 1.5E-40 T 11-11-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 vm_RS13925 4091ca17d26532f20968e27223b620f2 295 SUPERFAMILY SSF103481 36 140 2.88E-9 T 11-11-2016 vm_RS13925 4091ca17d26532f20968e27223b620f2 295 Pfam PF00892 EamA-like transporter family 157 294 7.4E-16 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS13925 4091ca17d26532f20968e27223b620f2 295 Pfam PF00892 EamA-like transporter family 4 135 6.1E-15 T 11-11-2016 IPR000620 EamA domain GO:0016020|GO:0016021 vm_RS13925 4091ca17d26532f20968e27223b620f2 295 SUPERFAMILY SSF103481 214 294 1.44E-9 T 11-11-2016 vm_RS02765 1d416978cb6df9783ae4b32b06fb50eb 420 Pfam PF01384 Phosphate transporter family 26 407 7.5E-118 T 11-11-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: R-HSA-427652 vm_RS05405 dfef2918f1e3153116021dc6a0352a98 370 Pfam PF13692 Glycosyl transferases group 1 213 338 9.7E-9 T 11-11-2016 vm_RS05405 dfef2918f1e3153116021dc6a0352a98 370 SUPERFAMILY SSF53756 70 340 3.09E-19 T 11-11-2016 vm_RS09265 392e8e8c8e55fefb2ec7bf57f8db724b 139 Gene3D G3DSA:3.10.450.50 4 134 1.9E-28 T 11-11-2016 IPR032710 NTF2-like domain vm_RS09265 392e8e8c8e55fefb2ec7bf57f8db724b 139 Pfam PF12680 SnoaL-like domain 6 109 1.2E-14 T 11-11-2016 IPR009959 Polyketide cyclase SnoaL-like domain vm_RS09265 392e8e8c8e55fefb2ec7bf57f8db724b 139 SUPERFAMILY SSF54427 4 131 2.06E-27 T 11-11-2016 IPR032710 NTF2-like domain vm_RS12680 1f1233ffd378f0f081b10f56e18739b1 143 Pfam PF10980 Protein of unknown function (DUF2787) 16 141 3.3E-42 T 11-11-2016 IPR021248 Protein of unknown function DUF2787 vm_RS07445 8fff779a7093089608a41987de62d138 157 Pfam PF13185 GAF domain 44 145 5.2E-9 T 11-11-2016 IPR003018 GAF domain GO:0005515 vm_RS07445 8fff779a7093089608a41987de62d138 157 Gene3D G3DSA:3.30.450.40 4 150 7.2E-47 T 11-11-2016 IPR029016 GAF domain-like vm_RS07445 8fff779a7093089608a41987de62d138 157 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 89 106 - T 11-11-2016 IPR000614 Free Met sulfoxide reductase conserved site vm_RS07445 8fff779a7093089608a41987de62d138 157 SUPERFAMILY SSF55781 4 145 4.21E-38 T 11-11-2016 IPR029016 GAF domain-like vm_RS08640 4456fa7ec16eb0c102e731b26dae664d 191 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 19 83 1.9E-9 T 11-11-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 vm_RS08640 4456fa7ec16eb0c102e731b26dae664d 191 Gene3D G3DSA:1.10.3420.10 166 189 5.0E-18 T 11-11-2016 IPR023292 NTP pyrophosphohydrolase-like domain vm_RS08640 4456fa7ec16eb0c102e731b26dae664d 191 Gene3D G3DSA:1.10.3420.10 12 127 5.0E-18 T 11-11-2016 IPR023292 NTP pyrophosphohydrolase-like domain vm_RS07365 3592264e32f5444815a01b64496a1c73 65 TIGRFAM TIGR02811 formate_TAT: formate dehydrogenase region TAT target 1 65 5.6E-25 T 11-11-2016 IPR014177 Putative formate dehydrogenase, TAT signal-containing vm_RS07365 3592264e32f5444815a01b64496a1c73 65 PIRSF PIRSF036704 1 65 5.4E-34 T 11-11-2016 IPR014177 Putative formate dehydrogenase, TAT signal-containing vm_RS07365 3592264e32f5444815a01b64496a1c73 65 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 10 30 7.1E-6 T 11-11-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal vm_RS07365 3592264e32f5444815a01b64496a1c73 65 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 10 33 2.7E-6 T 11-11-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal vm_RS13215 bc695383af664a8218e57855116bda12 253 Pfam PF06738 Putative threonine/serine exporter 10 246 1.4E-67 T 11-11-2016 IPR010619 Putative threonine/serine exporter vm_RS05790 f6e08074c57a0444263e36385e93213d 258 Pfam PF01925 Sulfite exporter TauE/SafE 12 249 4.4E-47 T 11-11-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 vm_RS06650 82eb20c3b2c2602ec5cd41faa4dd9946 315 Pfam PF13437 HlyD family secretion protein 196 276 1.0E-10 T 11-11-2016 vm_RS06650 82eb20c3b2c2602ec5cd41faa4dd9946 315 Gene3D G3DSA:2.40.50.100 194 225 2.2E-7 T 11-11-2016 vm_RS06650 82eb20c3b2c2602ec5cd41faa4dd9946 315 Gene3D G3DSA:2.40.50.100 44 67 2.2E-7 T 11-11-2016 vm_RS06650 82eb20c3b2c2602ec5cd41faa4dd9946 315 SUPERFAMILY SSF111369 169 244 5.36E-5 T 11-11-2016 vm_RS00960 b0c07e8459ef449476f9360d6909a0ed 253 Gene3D G3DSA:3.40.50.1820 3 251 1.6E-54 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS00960 b0c07e8459ef449476f9360d6909a0ed 253 Hamap MF_01260 Pimeloyl-[acyl-carrier protein] methyl ester esterase [bioH]. 3 252 45.373 T 11-11-2016 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 vm_RS00960 b0c07e8459ef449476f9360d6909a0ed 253 TIGRFAM TIGR01738 bioH: pimelyl-[acyl-carrier protein] methyl ester esterase 9 251 9.8E-120 T 11-11-2016 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase GO:0009102|GO:0052689 KEGG: 00780+3.1.1.85|MetaCyc: PWY-6519 vm_RS00960 b0c07e8459ef449476f9360d6909a0ed 253 Pfam PF00561 alpha/beta hydrolase fold 14 239 2.2E-22 T 11-11-2016 IPR000073 Alpha/beta hydrolase fold-1 vm_RS00960 b0c07e8459ef449476f9360d6909a0ed 253 SUPERFAMILY SSF53474 3 250 5.13E-50 T 11-11-2016 IPR029058 Alpha/Beta hydrolase fold vm_RS02875 aa6410928d77663c78e9104efd76b579 182 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 54 167 3.8E-21 T 11-11-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 vm_RS02875 aa6410928d77663c78e9104efd76b579 182 SUPERFAMILY SSF55846 2 179 3.14E-66 T 11-11-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 vm_RS02875 aa6410928d77663c78e9104efd76b579 182 SMART SM00644 16 167 1.0E-57 T 11-11-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 vm_RS02875 aa6410928d77663c78e9104efd76b579 182 Gene3D G3DSA:3.40.80.10 3 179 1.0E-67 T 11-11-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 vm_RS01515 337a07ee392119d07a8dfa204a63883f 166 PIRSF PIRSF034445 2 155 5.9E-16 T 11-11-2016 IPR012899 LTXXQ motif family protein GO:0042597 vm_RS01515 337a07ee392119d07a8dfa204a63883f 166 Pfam PF07813 LTXXQ motif family protein 39 144 4.0E-20 T 11-11-2016 IPR012899 LTXXQ motif family protein GO:0042597 vm_RS09850 0ea1f09b8e6069f57d712b36adedf5a7 132 Pfam PF04304 Protein of unknown function (DUF454) 7 121 2.1E-38 T 11-11-2016 IPR007401 Protein of unknown function DUF454 vm_RS09850 0ea1f09b8e6069f57d712b36adedf5a7 132 PIRSF PIRSF016789 6 127 1.4E-48 T 11-11-2016 IPR007401 Protein of unknown function DUF454 vm_RS06080 93cea6646069321663004995d91d7e89 330 SUPERFAMILY SSF53850 37 277 9.57E-7 T 11-11-2016 vm_RS06080 93cea6646069321663004995d91d7e89 330 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 302 4.0E-28 T 11-11-2016 IPR005064 Bordetella uptake gene GO:0030288 vm_RS13065 280e76aefa87a73033137c75c273cefc 185 Pfam PF02325 YGGT family 109 173 5.3E-20 T 11-11-2016 IPR003425 CCB3/YggT GO:0016020 vm_RS13065 280e76aefa87a73033137c75c273cefc 185 Pfam PF02325 YGGT family 9 78 8.3E-20 T 11-11-2016 IPR003425 CCB3/YggT GO:0016020 vm_RS02405 b97a526213cd0f1d26ba4cea575f20c4 245 Pfam PF00849 RNA pseudouridylate synthase 22 168 8.2E-28 T 11-11-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS02405 b97a526213cd0f1d26ba4cea575f20c4 245 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 60 74 - T 11-11-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS02405 b97a526213cd0f1d26ba4cea575f20c4 245 SUPERFAMILY SSF55120 14 220 2.08E-63 T 11-11-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 vm_RS15725 722ce411a3a2f3e6012f2ef9a9e2cdbc 278 Pfam PF01295 Adenylate cyclase, class-I 1 278 1.0E-96 T 11-11-2016 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 vm_RS12805 465fff13167edd6d468440e28ea21c8e 172 Gene3D G3DSA:2.30.110.20 3 152 7.9E-24 T 11-11-2016 IPR008514 Type VI secretion system effector, Hcp vm_RS12805 465fff13167edd6d468440e28ea21c8e 172 SUPERFAMILY SSF141452 1 166 3.27E-31 T 11-11-2016 IPR008514 Type VI secretion system effector, Hcp vm_RS12805 465fff13167edd6d468440e28ea21c8e 172 Pfam PF05638 Type VI secretion system effector, Hcp 5 143 7.7E-28 T 11-11-2016 IPR008514 Type VI secretion system effector, Hcp vm_RS12325 4844e9b80dd76361a4e0cdb96bb640b2 367 SUPERFAMILY SSF52540 58 202 4.17E-14 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12325 4844e9b80dd76361a4e0cdb96bb640b2 367 Gene3D G3DSA:3.40.50.300 4 177 8.8E-26 T 11-11-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase vm_RS12325 4844e9b80dd76361a4e0cdb96bb640b2 367 Pfam PF03969 AFG1-like ATPase 1 363 1.2E-170 T 11-11-2016 IPR005654 ATPase, AFG1-like GO:0005524 vm_RS12325 4844e9b80dd76361a4e0cdb96bb640b2 367 Hamap MF_01919 Cell division protein ZapE [zapE]. 1 367 54.653 T 11-11-2016 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 vm_RS02340 d8a9966bbe18621345b2f4c991b8035b 163 Pfam PF02470 MlaD protein 39 118 6.9E-21 T 11-11-2016 IPR003399 Mce/MlaD vm_RS02340 d8a9966bbe18621345b2f4c991b8035b 163 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 4 152 1.1E-54 T 11-11-2016 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 vm_RS14815 a4b7b3c5d105480615a05846b9aeee9e 400 SUPERFAMILY SSF103473 5 383 4.84E-54 T 11-11-2016 IPR020846 Major facilitator superfamily domain vm_RS14815 a4b7b3c5d105480615a05846b9aeee9e 400 Pfam PF07690 Major Facilitator Superfamily 14 348 1.5E-36 T 11-11-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 vm_RS14815 a4b7b3c5d105480615a05846b9aeee9e 400 Gene3D G3DSA:1.20.1250.20 202 383 4.3E-11 T 11-11-2016 vm_RS14815 a4b7b3c5d105480615a05846b9aeee9e 400 Gene3D G3DSA:1.20.1250.20 9 177 8.3E-23 T 11-11-2016 vm_RS14815 a4b7b3c5d105480615a05846b9aeee9e 400 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 5 371 4.9E-84 T 11-11-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 vm_RS12630 98818d87b2c97eb1406f3fad9ce31020 155 Pfam PF13274 Protein of unknown function (DUF4065) 32 122 1.7E-17 T 11-11-2016 IPR025272 Domain of unknown function DUF4065 vm_RS14305 2f9ca0b77d302333fbe356f6ee8de790 220 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 14 213 1.8E-65 T 11-11-2016 IPR020019 Sialic acid O-acyltransferase NeuD-like vm_RS14305 2f9ca0b77d302333fbe356f6ee8de790 220 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 129 163 3.1E-4 T 11-11-2016 IPR001451 Hexapeptide repeat vm_RS14305 2f9ca0b77d302333fbe356f6ee8de790 220 Gene3D G3DSA:3.40.50.20 13 96 2.5E-22 T 11-11-2016 IPR016185 Pre-ATP-grasp domain vm_RS14305 2f9ca0b77d302333fbe356f6ee8de790 220 SUPERFAMILY SSF51161 12 216 4.71E-42 T 11-11-2016 IPR011004 Trimeric LpxA-like vm_RS14305 2f9ca0b77d302333fbe356f6ee8de790 220 Gene3D G3DSA:2.160.10.10 101 218 1.6E-28 T 11-11-2016 vm_RS10665 d19d5a294f3a414f1d7cff9dbe509e0b 309 SUPERFAMILY SSF46785 3 85 2.72E-23 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS10665 d19d5a294f3a414f1d7cff9dbe509e0b 309 Gene3D G3DSA:1.10.10.10 1 86 4.9E-28 T 11-11-2016 IPR011991 Winged helix-turn-helix DNA-binding domain vm_RS10665 d19d5a294f3a414f1d7cff9dbe509e0b 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 2.7E-21 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS10665 d19d5a294f3a414f1d7cff9dbe509e0b 309 Pfam PF03466 LysR substrate binding domain 91 291 5.4E-36 T 11-11-2016 IPR005119 LysR, substrate-binding vm_RS10665 d19d5a294f3a414f1d7cff9dbe509e0b 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.9E-10 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS10665 d19d5a294f3a414f1d7cff9dbe509e0b 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.9E-10 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS10665 d19d5a294f3a414f1d7cff9dbe509e0b 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.9E-10 T 11-11-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 vm_RS10665 d19d5a294f3a414f1d7cff9dbe509e0b 309 Gene3D G3DSA:3.40.190.10 94 179 4.5E-34 T 11-11-2016 vm_RS10665 d19d5a294f3a414f1d7cff9dbe509e0b 309 Gene3D G3DSA:3.40.190.10 180 259 1.0E-15 T 11-11-2016 vm_RS10665 d19d5a294f3a414f1d7cff9dbe509e0b 309 SUPERFAMILY SSF53850 92 297 1.25E-37 T 11-11-2016 vm_RS08780 7c2f639672760a0521163c8d0feee08b 185 Pfam PF01066 CDP-alcohol phosphatidyltransferase 4 71 2.2E-18 T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 vm_RS08780 7c2f639672760a0521163c8d0feee08b 185 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 49 71 - T 11-11-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 vm_RS08780 7c2f639672760a0521163c8d0feee08b 185 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 3 180 1.7E-54 T 11-11-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 vm_RS08780 7c2f639672760a0521163c8d0feee08b 185 PIRSF PIRSF000847 1 184 9.5E-45 T 11-11-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668 vm_RS03745 ef4e47e3f665ba34beaa9e9a5de28141 191 Pfam PF13580 SIS domain 14 146 8.1E-30 T 11-11-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 vm_RS03745 ef4e47e3f665ba34beaa9e9a5de28141 191 Gene3D G3DSA:3.40.50.10490 1 190 1.4E-62 T 11-11-2016 vm_RS03745 ef4e47e3f665ba34beaa9e9a5de28141 191 SUPERFAMILY SSF53697 1 188 5.06E-51 T 11-11-2016 vm_RS03745 ef4e47e3f665ba34beaa9e9a5de28141 191 TIGRFAM TIGR00441 gmhA: phosphoheptose isomerase 34 187 1.1E-82 T 11-11-2016 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 vm_RS03745 ef4e47e3f665ba34beaa9e9a5de28141 191 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 190 37.879 T 11-11-2016 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 vm_RS14900 21c4907c06bb6b3540f0770edc97071d 228 SUPERFAMILY SSF52317 1 224 7.26E-75 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS14900 21c4907c06bb6b3540f0770edc97071d 228 Pfam PF01965 DJ-1/PfpI family 25 213 9.0E-15 T 11-11-2016 IPR002818 DJ-1/PfpI vm_RS14900 21c4907c06bb6b3540f0770edc97071d 228 Gene3D G3DSA:3.40.50.880 1 225 8.3E-91 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS12685 b659290897e0859313eb61214724f889 149 Pfam PF10980 Protein of unknown function (DUF2787) 15 138 9.3E-33 T 11-11-2016 IPR021248 Protein of unknown function DUF2787 vm_RS15060 3b0eb75b7a492dd002f8063a89b91aed 45 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 3 44 8.1E-26 T 11-11-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS15060 3b0eb75b7a492dd002f8063a89b91aed 45 Pfam PF00468 Ribosomal protein L34 3 44 2.4E-24 T 11-11-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS15060 3b0eb75b7a492dd002f8063a89b91aed 45 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 3 43 2.0E-15 T 11-11-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS15060 3b0eb75b7a492dd002f8063a89b91aed 45 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 2 45 16.462 T 11-11-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 vm_RS15060 3b0eb75b7a492dd002f8063a89b91aed 45 ProSitePatterns PS00784 Ribosomal protein L34 signature. 3 22 - T 11-11-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 vm_RS03385 f1a48d355e649604c688b457a9a8295e 201 Gene3D G3DSA:3.40.50.880 1 191 7.4E-54 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS03385 f1a48d355e649604c688b457a9a8295e 201 SUPERFAMILY SSF52317 3 187 1.15E-44 T 11-11-2016 IPR029062 Class I glutamine amidotransferase-like vm_RS03385 f1a48d355e649604c688b457a9a8295e 201 Pfam PF01965 DJ-1/PfpI family 3 168 2.4E-35 T 11-11-2016 IPR002818 DJ-1/PfpI vm_RS03385 f1a48d355e649604c688b457a9a8295e 201 TIGRFAM TIGR01383 not_thiJ: DJ-1 family protein 4 181 2.3E-64 T 11-11-2016 IPR006287 Protein deglycase DJ-1 GO:0006517|GO:0030091 vm_RS08580 6a3fcd55806509975f7e048b9b8f30e5 170 Gene3D G3DSA:1.25.40.10 78 165 7.6E-27 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS08580 6a3fcd55806509975f7e048b9b8f30e5 170 SUPERFAMILY SSF48452 22 139 9.7E-12 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS08580 6a3fcd55806509975f7e048b9b8f30e5 170 Gene3D G3DSA:1.25.40.10 17 74 7.6E-8 T 11-11-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 vm_RS07360 73b5ac6f63928a04c92d015804abfd00 218 Pfam PF02613 Nitrate reductase delta subunit 44 164 2.0E-34 T 11-11-2016 IPR020945 DMSO/Nitrate reductase chaperone vm_RS07360 73b5ac6f63928a04c92d015804abfd00 218 SUPERFAMILY SSF89155 10 199 6.41E-55 T 11-11-2016 IPR020945 DMSO/Nitrate reductase chaperone vm_RS07360 73b5ac6f63928a04c92d015804abfd00 218 Gene3D G3DSA:1.10.3480.10 8 200 1.9E-55 T 11-11-2016 IPR020945 DMSO/Nitrate reductase chaperone vm_RS02755 2a3dd0dbb5d829aa5e24b9684a13dd9f 250 Pfam PF16537 Type II secretion system protein B 185 244 5.3E-23 T 11-11-2016 IPR032389 Type II secretion system protein B vm_RS07905 1f9e60d2ea4fb9da907e5158995cb511 138 Pfam PF03994 Domain of Unknown Function (DUF350) 17 70 8.9E-11 T 11-11-2016 IPR007140 Protein of unknown function DUF350 vm_RS07905 1f9e60d2ea4fb9da907e5158995cb511 138 Pfam PF03994 Domain of Unknown Function (DUF350) 83 136 1.3E-12 T 11-11-2016 IPR007140 Protein of unknown function DUF350 vm_RS03360 be624238c74f9400bf13123d569b6990 138 Pfam PF11012 Protein of unknown function (DUF2850) 52 129 3.8E-27 T 11-11-2016 IPR021271 Protein of unknown function DUF2850 vm_RS07240 3bcc332ce5d61b15b8f51187b71aa70e 328 Pfam PF11279 Protein of unknown function (DUF3080) 28 323 5.1E-88 T 11-11-2016 IPR021431 Protein of unknown function DUF3080 vm_RS14330 fce5da69210c7c195add170b710524a7 436 TIGRFAM TIGR04370 glyco_rpt_poly: oligosaccharide repeat unit polymerase 118 419 2.5E-11 T 11-11-2016 vm_RS07695 16b398440383bfcc38ec681288b8c807 244 Pfam PF11153 Protein of unknown function (DUF2931) 4 228 1.6E-50 T 11-11-2016 IPR021326 Protein of unknown function DUF2931 vm_RS12635 92b3ef19d71b46e6c0d7760b1d424fa9 223 Gene3D G3DSA:1.10.418.10 20 112 3.6E-5 T 11-11-2016 IPR001715 Calponin homology domain GO:0005515 vm_RS03165 5fd2e7d6b76f36b7f750ce96ff7fe789 59 Pfam PF12065 Protein of unknown function (DUF3545) 1 57 3.4E-24 T 11-11-2016 IPR021932 Protein of unknown function DUF3545 vm_RS08180 446704f730e1a77f0c78ed884d459859 335 Pfam PF02653 Branched-chain amino acid transport system / permease component 40 324 3.6E-48 T 11-11-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 vm_RS06520 5f6bb03826eb7afe6efddff4929c2c39 129 Pfam PF11042 Protein of unknown function (DUF2750) 23 122 6.1E-37 T 11-11-2016 IPR021284 Protein of unknown function DUF2750 vm_RS06245 d750a8026edb2b96eea260a374d0de58 93 Pfam PF07383 Protein of unknown function (DUF1496) 34 78 7.8E-22 T 11-11-2016 IPR009971 Protein of unknown function DUF1496 vm_RS04155 e0743ce5611b595c126cf83ca4d4b5b8 733 SUPERFAMILY SSF56349 354 466 1.44E-8 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS04155 e0743ce5611b595c126cf83ca4d4b5b8 733 SUPERFAMILY SSF56349 493 541 1.44E-8 T 11-11-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 vm_RS04155 e0743ce5611b595c126cf83ca4d4b5b8 733 Gene3D G3DSA:1.10.443.10 353 542 1.3E-8 T 11-11-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 vm_RS14625 fdc45278217647f9fe76694d6a32ff55 314 SUPERFAMILY SSF110997 61 133 4.97E-5 T 11-11-2016 IPR007730 Sporulation-related domain GO:0042834 vm_RS16180 8af8bed7c8b1d4eb4f48326295bb15d0 203 Pfam PF13009 Putative phage integrase 2 203 3.3E-47 T 11-11-2016 IPR024965 Putative phage integrase vm_RS07120 80d447032621ba15f19203035f4b35b0 404 Pfam PF02687 FtsX-like permease family 281 396 3.6E-17 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 vm_RS07120 80d447032621ba15f19203035f4b35b0 404 Pfam PF12704 MacB-like periplasmic core domain 19 238 3.3E-23 T 11-11-2016 IPR025857 MacB-like periplasmic core domain vm_RS07985 78bae5e005e6386eb6919d20e7b22ae9 443 SMART SM00267 259 431 1.5E-50 T 11-11-2016 IPR000160 GGDEF domain vm_RS07985 78bae5e005e6386eb6919d20e7b22ae9 443 SUPERFAMILY SSF55073 275 430 2.28E-46 T 11-11-2016 IPR029787 Nucleotide cyclase vm_RS07985 78bae5e005e6386eb6919d20e7b22ae9 443 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 268 427 5.3E-44 T 11-11-2016 IPR000160 GGDEF domain vm_RS07985 78bae5e005e6386eb6919d20e7b22ae9 443 Gene3D G3DSA:3.30.70.270 272 432 2.6E-52 T 11-11-2016 vm_RS07985 78bae5e005e6386eb6919d20e7b22ae9 443 Pfam PF00990 Diguanylate cyclase, GGDEF domain 272 424 4.4E-46 T 11-11-2016 IPR000160 GGDEF domain vm_RS03055 d49f2ca14e8c12a6682c717c7351649f 317 Pfam PF03186 CobD/Cbib protein 19 290 6.8E-34 T 11-11-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 vm_RS13580 f92d86c897a84eb011dfb9347ed8dda7 444 Pfam PF00999 Sodium/hydrogen exchanger family 15 416 4.5E-56 T 11-11-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 vm_RS05175 7ac84d0c5ba392bd3e870d819424e710 92 Hamap MF_01866 Protein YcgL [ycgL]. 1 87 28.021 T 11-11-2016 IPR027354 YcgL domain vm_RS05175 7ac84d0c5ba392bd3e870d819424e710 92 SUPERFAMILY SSF160191 1 90 6.67E-38 T 11-11-2016 vm_RS05175 7ac84d0c5ba392bd3e870d819424e710 92 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 1 69 3.0E-33 T 11-11-2016 IPR027354 YcgL domain vm_RS05175 7ac84d0c5ba392bd3e870d819424e710 92 Pfam PF05166 YcgL domain 3 74 1.2E-32 T 11-11-2016 IPR027354 YcgL domain vm_RS10285 d214ddce86a1428a8e1af0084cfa9f3a 250 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 5 245 28.236 T 11-11-2016 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 vm_RS10285 d214ddce86a1428a8e1af0084cfa9f3a 250 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 11 227 4.0E-41 T 11-11-2016 vm_RS05595 02cfff04dd73ab9448de3b20e6b347b7 196 Pfam PF13036 Peptidoglycan-synthase activator LpoB 9 185 1.5E-65 T 11-11-2016 IPR014094 Penicillin-binding protein activator LpoB vm_RS05595 02cfff04dd73ab9448de3b20e6b347b7 196 TIGRFAM TIGR02722 lp_: uncharacterized lipoprotein 2 187 3.4E-75 T 11-11-2016 IPR014094 Penicillin-binding protein activator LpoB vm_RS03855 d6efd275cd5e325e39ea31cde08de274 201 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 67 199 1.9E-38 T 11-11-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal vm_RS03855 d6efd275cd5e325e39ea31cde08de274 201 SMART SM00858 79 141 2.4E-8 T 11-11-2016 IPR013974 SAF domain Reactome: R-HSA-4085001 vm_RS03855 d6efd275cd5e325e39ea31cde08de274 201 Pfam PF13144 Chaperone for flagella basal body P-ring formation 2 199 3.6E-51 T 11-11-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal vm_RS12810 cd4234623a5ebf03e6a287afcd6d2a4e 461 Pfam PF06812 ImpA, N-terminal, type VI secretion system 12 135 5.2E-19 T 11-11-2016 IPR010657 ImpA, N-terminal vm_RS04310 c084fd521039f9b12853c8b568c21164 650 Pfam PF02120 Flagellar hook-length control protein FliK 521 604 1.3E-26 T 11-11-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal vm_RS04375 b61f39c3173c3a65fa074322608b01d8 207 Pfam PF03458 UPF0126 domain 92 163 5.5E-21 T 11-11-2016 IPR005115 Uncharacterised domain UPF0126 vm_RS04375 b61f39c3173c3a65fa074322608b01d8 207 Pfam PF03458 UPF0126 domain 5 79 4.3E-20 T 11-11-2016 IPR005115 Uncharacterised domain UPF0126 vm_RS13830 dc9b612198cb9902e0ad8a95918165c7 87 Gene3D G3DSA:2.30.30.100 1 71 3.3E-38 T 11-11-2016 vm_RS13830 dc9b612198cb9902e0ad8a95918165c7 87 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 5 64 6.8E-30 T 11-11-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 vm_RS13830 dc9b612198cb9902e0ad8a95918165c7 87 SUPERFAMILY SSF50182 7 69 1.19E-24 T 11-11-2016 IPR010920 LSM domain vm_RS13830 dc9b612198cb9902e0ad8a95918165c7 87 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 3 64 27.727 T 11-11-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 vm_RS06145 5dff4e2423a379590a71896ee5ee8ca9 406 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 17 61 1.9E-7 T 11-11-2016 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal vm_RS09205 efa626da61e382f3a72ba7ca66fc733c 533 Pfam PF03553 Na+/H+ antiporter family 165 497 6.6E-104 T 11-11-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 vm_RS06915 fc9fa4501e64313e5bfebc1e34e0c6a2 382 Pfam PF12698 ABC-2 family transporter protein 16 369 4.8E-42 T 11-11-2016 vm_RS10030 ee7865af1949c72ccf64e652ca0dc707 316 Pfam PF01882 Protein of unknown function DUF58 53 138 4.5E-21 T 11-11-2016 IPR002881 Domain of unknown function DUF58 vm_RS09890 25bed5730743fa088b3fe403b4a949a8 243 Pfam PF11859 Protein of unknown function (DUF3379) 1 239 1.1E-83 T 11-11-2016 IPR021806 Protein of unknown function DUF3379 vm_RS09500 eea295e35f43f5c24be39e9403cc992a 294 Pfam PF03613 PTS system mannose/fructose/sorbose family IID component 38 294 4.5E-88 T 11-11-2016 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component GO:0009401|GO:0016021 vm_RS10685 5648f2e45429f27f2e8a1c45996e30ca 254 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 182 199 - T 11-11-2016 IPR000540 Flagellar motor protein MotA, conserved site vm_RS10685 5648f2e45429f27f2e8a1c45996e30ca 254 Pfam PF01618 MotA/TolQ/ExbB proton channel family 99 213 2.5E-21 T 11-11-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 vm_RS07615 2e7f3564f3c3f1bc7ccc3f0273087d3a 263 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 120 257 3.5E-18 T 11-11-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 vm_RS03520 6ee06615e40e7caf9803c711c18fc321 430 Pfam PF00860 Permease family 17 391 1.1E-55 T 11-11-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 vm_RS03520 6ee06615e40e7caf9803c711c18fc321 430 PIRSF PIRSF005353 1 430 1.1E-186 T 11-11-2016 IPR026033 Purine permease PbuG-like vm_RS07530 fee176bd5708b5d2750910ec35dca854 105 Pfam PF12321 Protein of unknown function (DUF3634) 2 102 3.4E-40 T 11-11-2016 IPR022090 Protein of unknown function DUF3634 vm_RS15030 50a2ca9d6883421b7d11f0786c55d26f 122 Pfam PF12728 Helix-turn-helix domain 46 97 1.1E-12 T 11-11-2016 vm_RS15030 50a2ca9d6883421b7d11f0786c55d26f 122 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 46 94 1.4E-18 T 11-11-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 vm_RS15030 50a2ca9d6883421b7d11f0786c55d26f 122 SUPERFAMILY SSF46955 46 107 4.03E-5 T 11-11-2016 IPR009061 Putative DNA-binding domain vm_RS10725 1a10975cab735f316583b08fb7431f84 177 Pfam PF13302 Acetyltransferase (GNAT) domain 9 142 4.2E-18 T 11-11-2016 IPR000182 GNAT domain GO:0008080 vm_RS10725 1a10975cab735f316583b08fb7431f84 177 SUPERFAMILY SSF55729 2 144 1.58E-23 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS10725 1a10975cab735f316583b08fb7431f84 177 Gene3D G3DSA:3.40.630.30 2 151 5.5E-24 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS06880 3ded5846669df79027bd25c7ea86a70f 168 Pfam PF01863 Protein of unknown function DUF45 98 150 5.8E-10 T 11-11-2016 IPR002725 Protein of unknown function DUF45 vm_RS04450 885c794724e5258048d82609b11317eb 73 Pfam PF10981 Protein of unknown function (DUF2788) 18 67 3.8E-19 T 11-11-2016 IPR021249 Protein of unknown function DUF2788 vm_RS06525 e38b949f7ab1544a99d0280fa387b288 255 Pfam PF11150 Protein of unknown function (DUF2927) 28 226 2.3E-64 T 11-11-2016 IPR021323 Protein of unknown function DUF2927 vm_RS00935 6d127922d55630500c19ffe8f26b647f 252 Pfam PF01203 Type II secretion system (T2SS), protein N 37 247 1.0E-58 T 11-11-2016 IPR022792 Type II secretion system, protein N vm_RS04780 5126017d800b62c6c33d75fe2e95fc91 479 TIGRFAM TIGR00931 antiport_nhaC: Na+/H+ antiporter NhaC 7 457 3.7E-161 T 11-11-2016 IPR004770 Na+/H+ antiporter NhaC GO:0015297|GO:0016021 vm_RS04780 5126017d800b62c6c33d75fe2e95fc91 479 Pfam PF03553 Na+/H+ antiporter family 161 453 5.0E-66 T 11-11-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 vm_RS02415 8c087e99ecaa9e295ef3d1be02596850 390 Pfam PF05987 Bacterial protein of unknown function (DUF898) 7 382 1.8E-93 T 11-11-2016 IPR010295 Protein of unknown function DUF898 vm_RS06805 0a6d38b1c3d3c78544a113a6488a8b08 817 Pfam PF02687 FtsX-like permease family 244 368 1.3E-12 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 vm_RS06805 0a6d38b1c3d3c78544a113a6488a8b08 817 Pfam PF02687 FtsX-like permease family 692 809 5.5E-12 T 11-11-2016 IPR003838 ABC transporter permease protein domain GO:0016020 vm_RS14310 74035cb7b3e615dadbf6b7b2f8cca3c8 204 Pfam PF02397 Bacterial sugar transferase 2 176 3.6E-58 T 11-11-2016 IPR003362 Bacterial sugar transferase vm_RS01535 161754478c0c1b59e8033ca723d0dc97 80 Hamap MF_01196 Cell division protein ZapB [zapB]. 1 79 18.04 T 11-11-2016 IPR009252 Cell division protein ZapB GO:0000917|GO:0005737|GO:0043093 vm_RS01535 161754478c0c1b59e8033ca723d0dc97 80 Pfam PF06005 Protein of unknown function (DUF904) 1 77 9.1E-26 T 11-11-2016 IPR009252 Cell division protein ZapB GO:0000917|GO:0005737|GO:0043093 vm_RS02420 73fa01e0ad954699035880ecf1904254 331 Pfam PF01435 Peptidase family M48 179 330 5.3E-24 T 11-11-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 vm_RS02420 73fa01e0ad954699035880ecf1904254 331 Gene3D G3DSA:3.30.2010.10 179 235 8.5E-10 T 11-11-2016 vm_RS04470 7d90e6759399007327923fce8d8f2a3b 249 Pfam PF08907 Domain of unknown function (DUF1853) 39 216 4.2E-35 T 11-11-2016 IPR015003 Protein of unknown function DUF1853 vm_RS12080 2b7343f06050bbb7cad2394ab175a17f 361 Pfam PF01594 Domain of unknown function DUF20 14 347 8.2E-55 T 11-11-2016 IPR002549 Transmembrane protein TqsA-like vm_RS05700 564615efe0f1547676a9aa132ab29b21 511 Pfam PF04293 SpoVR like protein 24 453 1.7E-177 T 11-11-2016 IPR007390 Sporulation stage V, protein R vm_RS05070 6d76501f297ed5b83e4b7458603ce158 200 Pfam PF03942 DTW domain 3 185 3.5E-50 T 11-11-2016 IPR005636 DTW vm_RS05070 6d76501f297ed5b83e4b7458603ce158 200 SMART SM01144 1 190 5.2E-67 T 11-11-2016 IPR005636 DTW vm_RS06655 39b38ceef165659ff20de73ac9a7a512 417 Pfam PF03222 Tryptophan/tyrosine permease family 30 385 2.8E-12 T 11-11-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 vm_RS14425 b2d363eebc6894d97c173da9aa53788f 307 Pfam PF07507 WavE lipopolysaccharide synthesis 9 305 3.1E-109 T 11-11-2016 IPR011122 WavE lipopolysaccharide synthesis vm_RS03005 7ef797f1ab29499b94fe0c153b9b21cf 157 Pfam PF05258 Protein of unknown function (DUF721) 11 88 1.9E-11 T 11-11-2016 IPR007922 Protein of unknown function DUF721/UPF0232 vm_RS06185 98429b9e26653293bb85c6dae1358362 550 Pfam PF01204 Trehalase 246 429 1.5E-19 T 11-11-2016 IPR001661 Glycoside hydrolase, family 37 GO:0004555|GO:0005991 KEGG: 00500+3.2.1.28|Reactome: R-HSA-189085 vm_RS06185 98429b9e26653293bb85c6dae1358362 550 SUPERFAMILY SSF48208 36 451 3.74E-74 T 11-11-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 vm_RS05360 5b6d36713cd1c36e4016d180be0b746f 93 Pfam PF06305 Protein of unknown function (DUF1049) 22 83 6.2E-14 T 11-11-2016 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 vm_RS05360 5b6d36713cd1c36e4016d180be0b746f 93 Hamap MF_01948 Lipopolysaccharide assembly protein A [lapA]. 1 93 18.8 T 11-11-2016 IPR032906 Lipopolysaccharide assembly protein A GO:0005886|GO:0008653 vm_RS03535 4c9798bc2c6bde747a1fc854ae61aeae 129 Pfam PF07417 Transcriptional regulator Crl 6 122 2.2E-48 T 11-11-2016 IPR009986 Sigma factor-binding protein Crl GO:0005737|GO:0045893 vm_RS03535 4c9798bc2c6bde747a1fc854ae61aeae 129 Hamap MF_01178 Sigma factor-binding protein Crl [crl]. 2 129 30.638 T 11-11-2016 IPR009986 Sigma factor-binding protein Crl GO:0005737|GO:0045893 vm_RS01910 bb8e9c827ff6d35c8bf9398563f63a2b 66 Pfam PF09526 Probable metal-binding protein (DUF2387) 4 56 8.1E-20 T 11-11-2016 IPR012658 Conserved hypothetical protein CHP02443 vm_RS01910 bb8e9c827ff6d35c8bf9398563f63a2b 66 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 2 60 2.0E-31 T 11-11-2016 IPR012658 Conserved hypothetical protein CHP02443 vm_RS08710 82ffe999e517e567c04869c093cc942b 291 Pfam PF03547 Membrane transport protein 143 284 4.9E-13 T 11-11-2016 IPR004776 Membrane transport protein GO:0016021|GO:0055085 vm_RS06150 7677d8969fb13c3d2c0aadbba92baa95 145 Pfam PF07811 TadE-like protein 12 54 2.5E-10 T 11-11-2016 IPR012495 TadE-like vm_RS12955 6ece3bbc90e103f45ab39ae044574740 211 Pfam PF01810 LysE type translocator 15 200 1.4E-39 T 11-11-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 vm_RS03425 37485c14f702da76a56a896538862aec 191 Pfam PF03923 Uncharacterized lipoprotein 28 186 6.6E-52 T 11-11-2016 IPR005619 Uncharacterised protein family, YajG vm_RS02090 3bec90e4f9a5421d9a5c741334bf450e 158 Pfam PF11075 Protein of unknown function VcgC/VcgE (DUF2780) 10 154 1.8E-33 T 11-11-2016 IPR021302 Protein of unknown function DUF2780, VcgC/VcgE vm_RS09580 526e733a5e5c607ad3bd9c39d67fdb66 241 TIGRFAM TIGR03950 sidero_Fe_reduc: siderophore ferric iron reductase, AHA_1954 family 10 235 3.1E-91 T 11-11-2016 IPR023998 Siderophore ferric iron reductase, AHA1954 family vm_RS07705 87b64a8e7638e5a3a488e65f7885495e 262 Pfam PF13503 Domain of unknown function (DUF4123) 14 126 5.5E-20 T 11-11-2016 IPR025391 Domain of unknown function DUF4123 vm_RS03110 e80a935cc621afc280c481490d30d958 129 Pfam PF11697 Protein of unknown function (DUF3293) 31 100 4.7E-19 T 11-11-2016 IPR021710 Protein of unknown function DUF3293 vm_RS10660 709b41417a9608930157e9722ef483a1 128 Pfam PF04241 Protein of unknown function (DUF423) 20 110 3.0E-31 T 11-11-2016 IPR006696 Protein of unknown function DUF423 vm_RS01230 90136dad58fb79ee157e64acd37ea7c3 90 Gene3D G3DSA:3.30.920.30 43 88 5.3E-4 T 11-11-2016 vm_RS10940 90136dad58fb79ee157e64acd37ea7c3 90 Gene3D G3DSA:3.30.920.30 43 88 5.3E-4 T 11-11-2016 vm_RS09915 877c908ceb3b23e8edfa16ce708ae29d 704 Pfam PF05170 AsmA family 1 595 9.2E-158 T 11-11-2016 IPR007844 AsmA vm_RS06075 4cb900eed865271db47bbdbf49fc9560 168 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 16 160 3.1E-12 T 11-11-2016 IPR009936 Protein of unknown function DUF1468 vm_RS09045 a90fa4d27cb6c73a4841cba47e9f248e 502 Pfam PF14400 Inactive transglutaminase fused to 7 transmembrane helices 25 183 4.7E-56 T 11-11-2016 IPR025838 Inactive transglutaminase fused to 7 transmembrane helices vm_RS09045 a90fa4d27cb6c73a4841cba47e9f248e 502 Pfam PF14402 7 transmembrane helices usually fused to an inactive transglutaminase 190 498 5.0E-134 T 11-11-2016 IPR025840 7 transmembrane helices usually fused to an inactive transglutaminase vm_RS09690 085a709d23dc7419a11f82580fd88e13 354 Gene3D G3DSA:3.40.630.30 25 139 6.2E-5 T 11-11-2016 IPR016181 Acyl-CoA N-acyltransferase vm_RS05260 9aa5ecf7613b49207639ef2104598d2d 156 SUPERFAMILY SSF56524 35 154 9.02E-10 T 11-11-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 Reactome: R-HSA-1614517 vm_RS02450 7134efc55967be9c64e74592a188edb5 157 Pfam PF06271 RDD family 8 147 1.2E-23 T 11-11-2016 IPR010432 RDD vm_RS06510 f1db3d163014cafd84f744776be37ba5 402 Pfam PF11449 Putative, 10TM heavy-metal exporter 40 400 5.0E-153 T 11-11-2016 IPR021552 Putative, 10TM heavy-metal exporter vm_RS06690 d8657ccd164909dfa283ceb6707f6422 247 Pfam PF06629 MltA-interacting protein MipA 33 245 4.4E-32 T 11-11-2016 IPR010583 MltA-interacting MipA vm_RS03300 7681868db4706d082045b4b74eea9bbb 394 Pfam PF05940 NnrS protein 16 388 3.6E-108 T 11-11-2016 IPR010266 NnrS vm_RS10740 0d2e6ad3af3a18b04b188b67fb4ce9e3 528 Pfam PF03806 AbgT putative transporter family 19 526 3.4E-229 T 11-11-2016 IPR004697 p-aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 vm_RS13750 2589cd7b81a818889d88e707eebc2548 62 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 52 9.3E-14 T 11-11-2016 IPR007419 BFD-like [2Fe-2S]-binding domain vm_RS06410 4efa57f3149bdb805b695a49532eb389 66 Pfam PF14056 Domain of unknown function (DUF4250) 10 61 7.5E-20 T 11-11-2016 IPR025346 Protein of unknown function DUF4250 vm_RS14995 569f2e46fc3d4b74fd02f33ff673e6bd 1147 Pfam PF07916 TraG-like protein, N-terminal region 6 465 1.7E-95 T 11-11-2016 IPR012931 TraG-like, N-terminal vm_RS05280 2763a1ead49a422bf2f280046a1a5656 220 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 28 180 4.0E-26 T 11-11-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component vm_RS05415 4ca33eb783e25d03a8b624b4d4aac9cf 458 Pfam PF04932 O-Antigen ligase 232 370 1.5E-20 T 11-11-2016 IPR007016 O-antigen ligase-related vm_RS00670 da1c2444b5b09ed769286fa3f4210f84 88 Pfam PF06611 Protein of unknown function (DUF1145) 4 59 5.6E-18 T 11-11-2016 IPR009525 Protein of unknown function DUF1145 vm_RS14400 5d53263c147e8ffcb71b249f9b6f8310 260 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 71 154 3.9E-18 T 11-11-2016 IPR007577 Glycosyltransferase, DXD sugar-binding motif vm_RS14400 5d53263c147e8ffcb71b249f9b6f8310 260 SUPERFAMILY SSF53448 14 258 5.81E-37 T 11-11-2016 IPR029044 Nucleotide-diphospho-sugar transferases vm_RS00820 48e2c3031c225c8da9c306faa563bb2b 195 Pfam PF13511 Domain of unknown function (DUF4124) 12 74 2.8E-8 T 11-11-2016 IPR025392 Domain of unknown function DUF4124 vm_RS13810 858681eafb7fe96af97c8228de7c53f5 62 Pfam PF09838 Uncharacterized protein conserved in bacteria (DUF2065) 5 59 1.0E-24 T 11-11-2016 IPR019201 Protein of unknown function DUF2065 vm_RS06480 77c6397c40a229b865db31d5dc69aefe 60 TIGRFAM TIGR02972 TMAO_torE: trimethylamine N-oxide reductase system, TorE protein 8 57 1.2E-30 T 11-11-2016 IPR014316 Trimethylamine N-oxide reductase system, TorE vm_RS06480 77c6397c40a229b865db31d5dc69aefe 60 Pfam PF06796 Periplasmic nitrate reductase protein NapE 5 55 5.6E-26 T 11-11-2016 IPR010649 Nitrate/trimethylamine N-oxide reductase NapE/TorE vm_RS08225 d3af9ae9e3267e87b68a6e33eec02720 257 Pfam PF06629 MltA-interacting protein MipA 49 257 1.5E-42 T 11-11-2016 IPR010583 MltA-interacting MipA vm_RS07035 b56cf30b01b26d025434acfcc11c4975 152 Pfam PF09900 Predicted membrane protein (DUF2127) 7 143 9.0E-41 T 11-11-2016 IPR021125 Protein of unknown function DUF2127 vm_RS03475 e8c3949fed99f447c853da2080ebd962 77 Pfam PF04400 Protein of unknown function (DUF539) 22 63 1.0E-21 T 11-11-2016 IPR007495 (Na+)-NQR maturation factor NqrM vm_RS10050 df7b0c7f4842a48635273fb6b70b1be2 416 Pfam PF13584 Oxygen tolerance 53 284 8.9E-30 T 11-11-2016 IPR025738 Aerotolerance-related protein BatD vm_RS05780 40903dcff7d7476790eb256692045fa1 60 Pfam PF10689 Protein of unknown function (DUF2496) 7 49 2.1E-23 T 11-11-2016 IPR019630 Protein of unknown function DUF2496, YbaM-related vm_RS14570 7835740bc84f453dedf7141ce6c7fb2e 99 Pfam PF12305 Protein of unknown function (DUF3630) 5 96 2.0E-36 T 11-11-2016 IPR022080 Protein of unknown function DUF3630 vm_RS09060 a72b5c7efbb83e138ffb31af3262ab00 421 Pfam PF06097 Bacterial protein of unknown function (DUF945) 5 409 4.2E-43 T 11-11-2016 IPR010352 Protein of unknown function DUF945 vm_RS06155 4a4272d1ebed6c24668f2d2cc2172c10 161 Pfam PF07811 TadE-like protein 3 45 1.5E-8 T 11-11-2016 IPR012495 TadE-like vm_RS11815 674570b65b8ff3fbbf7593b647da8624 264 Pfam PF01925 Sulfite exporter TauE/SafE 9 261 9.5E-51 T 11-11-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 vm_RS06070 9161d988de7225de1b2c66367d7a75b4 502 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 437 4.2E-128 T 11-11-2016 IPR002823 Protein of unknown function DUF112, transmembrane vm_RS06170 dc89a4ce00acdae042dd51ffbb86dd13 321 Pfam PF00482 Type II secretion system (T2SS), protein F 154 279 5.2E-18 T 11-11-2016 IPR018076 Type II secretion system F domain vm_RS07575 3d98db513e681925dba0c3405da3bc0b 158 Pfam PF05751 FixH 7 147 8.1E-43 T 11-11-2016 IPR008620 Nitrogen fixation protein FixH vm_RS07870 33069a983ae07a1e5b75269338e32386 104 SUPERFAMILY SSF103481 5 101 4.45E-18 T 11-11-2016 vm_RS07870 33069a983ae07a1e5b75269338e32386 104 Pfam PF00893 Small Multidrug Resistance protein 1 93 1.4E-25 T 11-11-2016 IPR000390 Small multidrug resistance protein family GO:0016021 vm_RS04645 8ae8e1da0e74d7704778d8879bda2c67 161 Pfam PF10975 Protein of unknown function (DUF2802) 68 134 8.6E-23 T 11-11-2016 IPR021244 Protein of unknown function DUF2802 vm_RS13720 768bb2e68f662f2be29cb8b07baa4674 269 Pfam PF04338 Protein of unknown function, DUF481 54 269 6.1E-52 T 11-11-2016 IPR007433 Protein of unknown function DUF481 vm_RS03835 0986382b32414f037659c2bcacdbb3f8 211 PIRSF PIRSF028688 1 211 2.9E-123 T 11-11-2016 IPR014549 Flagellar protein FlgO vm_RS18900 369d46834b601d590a2dd1a5e21c119c 276 Pfam PF01594 Domain of unknown function DUF20 2 269 5.1E-63 T 11-11-2016 IPR002549 Transmembrane protein TqsA-like vm_RS08850 7c1e1dccdd730dd99d4d135590ae4eb0 241 Pfam PF12119 Protein of unknown function (DUF3581) 1 216 3.4E-96 T 11-11-2016 IPR021974 Protein of unknown function DUF3581 vm_RS05590 ba3d3fea23fe33be1905fbb56839128e 129 Pfam PF07233 Protein of unknown function (DUF1425) 35 125 8.2E-31 T 11-11-2016 IPR010824 Protein of unknown function DUF1425 vm_RS04215 01c885b42cae88826024f74694872997 118 Pfam PF11169 Protein of unknown function (DUF2956) 9 113 8.3E-40 T 11-11-2016 IPR021339 Protein of unknown function DUF2956