locus-tag class description VPBB_RS00005 PF00258 Flavodoxin VPBB_RS00010 PF01926 50S ribosome-binding GTPase VPBB_RS00010 PF12631 MnmE helical domain VPBB_RS00010 PF10396 GTP-binding protein TrmE N-terminus VPBB_RS00015 PF14849 YidC periplasmic domain VPBB_RS00015 PF02096 60Kd inner membrane protein VPBB_RS00020 PF00825 Ribonuclease P VPBB_RS00025 PF00468 Ribosomal protein L34 VPBB_RS00030 PF00005 ABC transporter VPBB_RS00035 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS00040 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_RS00045 PF00308 Bacterial dnaA protein VPBB_RS00045 PF11638 DnaA N-terminal domain VPBB_RS00045 PF08299 Bacterial dnaA protein helix-turn-helix VPBB_RS00050 PF00712 DNA polymerase III beta subunit, N-terminal domain VPBB_RS00050 PF02768 DNA polymerase III beta subunit, C-terminal domain VPBB_RS00050 PF02767 DNA polymerase III beta subunit, central domain VPBB_RS00055 PF02463 RecF/RecN/SMC N terminal domain VPBB_RS00060 PF00986 DNA gyrase B subunit, carboxyl terminus VPBB_RS00060 PF18053 DNA gyrase B subunit insert domain VPBB_RS00060 PF00204 DNA gyrase B VPBB_RS00060 PF01751 Toprim domain VPBB_RS00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS00070 PF00011 Hsp20/alpha crystallin family VPBB_RS00075 PF00155 Aminotransferase class I and II VPBB_RS00080 PF00128 Alpha amylase, catalytic domain VPBB_RS00085 PF05746 DALR anticodon binding domain VPBB_RS00085 PF02092 Glycyl-tRNA synthetase beta subunit VPBB_RS00090 PF02091 Glycyl-tRNA synthetase alpha subunit VPBB_RS00095 PF01169 Uncharacterized protein family UPF0016 VPBB_RS00105 PF01206 Sulfurtransferase TusA VPBB_RS00115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS00115 PF03466 LysR substrate binding domain VPBB_RS00120 PF00107 Zinc-binding dehydrogenase VPBB_RS00120 PF08240 Alcohol dehydrogenase GroES-like domain VPBB_RS00125 PF00108 Thiolase, N-terminal domain VPBB_RS00125 PF02803 Thiolase, C-terminal domain VPBB_RS00130 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VPBB_RS00130 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VPBB_RS00130 PF00378 Enoyl-CoA hydratase/isomerase VPBB_RS00135 PF01205 Uncharacterized protein family UPF0029 VPBB_RS00135 PF09186 Domain of unknown function (DUF1949) VPBB_RS00140 PF02386 Cation transport protein VPBB_RS00145 PF12724 Flavodoxin domain VPBB_RS00180 PF03466 LysR substrate binding domain VPBB_RS00180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS00185 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VPBB_RS00185 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VPBB_RS00190 PF04380 Membrane fusogenic activity VPBB_RS00195 PF00873 AcrB/AcrD/AcrF family VPBB_RS00200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_RS00205 PF00440 Bacterial regulatory proteins, tetR family VPBB_RS00205 PF16295 Tetracyclin repressor-like, C-terminal domain VPBB_RS00210 PF00580 UvrD/REP helicase N-terminal domain VPBB_RS00210 PF13361 UvrD-like helicase C-terminal domain VPBB_RS00215 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VPBB_RS00245 PF13419 Haloacid dehalogenase-like hydrolase VPBB_RS00255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_RS00255 PF00005 ABC transporter VPBB_RS00260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_RS00265 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS00270 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS00270 PF12911 N-terminal TM domain of oligopeptide transport permease C VPBB_RS00300 PF00069 Protein kinase domain VPBB_RS00305 PF00356 Bacterial regulatory proteins, lacI family VPBB_RS00305 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VPBB_RS00310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS00310 PF03466 LysR substrate binding domain VPBB_RS00315 PF00893 Small Multidrug Resistance protein VPBB_RS00320 PF00893 Small Multidrug Resistance protein VPBB_RS00325 PF00920 Dehydratase family VPBB_RS00330 PF01202 Shikimate kinase VPBB_RS00335 PF02447 GntP family permease VPBB_RS00340 PF01081 KDPG and KHG aldolase VPBB_RS00345 PF01048 Phosphorylase superfamily VPBB_RS00350 PF03466 LysR substrate binding domain VPBB_RS00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS00355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VPBB_RS00355 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_RS00360 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VPBB_RS00365 PF01432 Peptidase family M3 VPBB_RS00370 PF01037 Lrp/AsnC ligand binding domain VPBB_RS00380 PF04445 Putative SAM-dependent methyltransferase VPBB_RS00390 PF00892 EamA-like transporter family VPBB_RS00395 PF00582 Universal stress protein family VPBB_RS00400 PF00210 Ferritin-like domain VPBB_RS00405 PF10625 Universal stress protein B (UspB) VPBB_RS00415 PF01590 GAF domain VPBB_RS00415 PF02954 Bacterial regulatory protein, Fis family VPBB_RS00415 PF00158 Sigma-54 interaction domain VPBB_RS00420 PF04972 BON domain VPBB_RS00440 PF00781 Diacylglycerol kinase catalytic domain VPBB_RS00470 PF01594 AI-2E family transporter VPBB_RS00475 PF00563 EAL domain VPBB_RS00475 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS00475 PF03707 Bacterial signalling protein N terminal repeat VPBB_RS00485 PF02646 RmuC family VPBB_RS00490 PF01209 ubiE/COQ5 methyltransferase family VPBB_RS00495 PF02036 SCP-2 sterol transfer family VPBB_RS00500 PF03109 ABC1 family VPBB_RS00505 PF02416 mttA/Hcf106 family VPBB_RS00510 PF02416 mttA/Hcf106 family VPBB_RS00515 PF00902 Sec-independent protein translocase protein (TatC) VPBB_RS00520 PF01026 TatD related DNase VPBB_RS00525 PF00490 Delta-aminolevulinic acid dehydratase VPBB_RS00535 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VPBB_RS00535 PF01612 3'-5' exonuclease VPBB_RS00535 PF01367 5'-3' exonuclease, C-terminal SAM fold VPBB_RS00535 PF00476 DNA polymerase family A VPBB_RS00540 PF01926 50S ribosome-binding GTPase VPBB_RS00545 PF00034 Cytochrome c VPBB_RS00555 PF04220 Der GTPase activator (YihI) VPBB_RS00560 PF10675 Protein of unknown function (DUF2489) VPBB_RS00565 PF06969 HemN C-terminal domain VPBB_RS00565 PF04055 Radical SAM superfamily VPBB_RS00570 PF00962 Adenosine/AMP deaminase VPBB_RS00575 PF00563 EAL domain VPBB_RS00575 PF03707 Bacterial signalling protein N terminal repeat VPBB_RS00575 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS00580 PF00158 Sigma-54 interaction domain VPBB_RS00580 PF02954 Bacterial regulatory protein, Fis family VPBB_RS00580 PF00072 Response regulator receiver domain VPBB_RS00585 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS00585 PF00989 PAS fold VPBB_RS00585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS00595 PF03951 Glutamine synthetase, beta-Grasp domain VPBB_RS00595 PF00120 Glutamine synthetase, catalytic domain VPBB_RS00600 PF00679 Elongation factor G C-terminus VPBB_RS00600 PF00009 Elongation factor Tu GTP binding domain VPBB_RS00600 PF03144 Elongation factor Tu domain 2 VPBB_RS00615 PF03631 Virulence factor BrkB VPBB_RS00620 PF02580 D-Tyr-tRNA(Tyr) deacylase VPBB_RS00625 PF09500 Putative thioesterase (yiiD_Cterm) VPBB_RS00625 PF00583 Acetyltransferase (GNAT) family VPBB_RS00635 PF01293 Phosphoenolpyruvate carboxykinase VPBB_RS00640 PF01430 Hsp33 protein VPBB_RS00645 PF01479 S4 domain VPBB_RS00650 PF11356 Type II secretion system protein C VPBB_RS00655 PF03958 Bacterial type II/III secretion system short domain VPBB_RS00655 PF00263 Bacterial type II and III secretion system protein VPBB_RS00660 PF00437 Type II/IV secretion system protein VPBB_RS00665 PF00482 Type II secretion system (T2SS), protein F VPBB_RS00670 PF08334 Type II secretion system (T2SS), protein G VPBB_RS00670 PF07963 Prokaryotic N-terminal methylation motif VPBB_RS00675 PF12019 Type II transport protein GspH VPBB_RS00680 PF07963 Prokaryotic N-terminal methylation motif VPBB_RS00680 PF02501 Type II secretion system (T2SS), protein I VPBB_RS00685 PF11612 Type II secretion system (T2SS), protein J VPBB_RS00685 PF07963 Prokaryotic N-terminal methylation motif VPBB_RS00690 PF03934 Type II secretion system (T2SS), protein K VPBB_RS00695 PF05134 Type II secretion system (T2SS), protein L VPBB_RS00695 PF12693 GspL periplasmic domain VPBB_RS00700 PF04612 Type II secretion system (T2SS), protein M VPBB_RS00705 PF01203 Type II secretion system (T2SS), protein N VPBB_RS00710 PF00459 Inositol monophosphatase family VPBB_RS00715 PF00293 NUDIX domain VPBB_RS00720 PF01521 Iron-sulphur cluster biosynthesis VPBB_RS00720 PF01106 NifU-like domain VPBB_RS00725 PF00561 alpha/beta hydrolase fold VPBB_RS00735 PF17674 HHH domain VPBB_RS00735 PF00575 S1 RNA binding domain VPBB_RS00735 PF09371 Tex-like protein N-terminal domain VPBB_RS00735 PF16921 Tex protein YqgF-like domain VPBB_RS00745 PF01272 Transcription elongation factor, GreA/GreB, C-term VPBB_RS00745 PF03449 Transcription elongation factor, N-terminal VPBB_RS00755 PF00486 Transcriptional regulatory protein, C terminal VPBB_RS00755 PF00072 Response regulator receiver domain VPBB_RS00760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS00760 PF00672 HAMP domain VPBB_RS00760 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS00765 PF00860 Permease family VPBB_RS00775 PF17191 RecG wedge domain VPBB_RS00775 PF00271 Helicase conserved C-terminal domain VPBB_RS00775 PF00270 DEAD/DEAH box helicase VPBB_RS00780 PF12105 SpoU, rRNA methylase, C-terminal VPBB_RS00780 PF00588 SpoU rRNA Methylase family VPBB_RS00785 PF13291 ACT domain VPBB_RS00785 PF04607 Region found in RelA / SpoT proteins VPBB_RS00785 PF02824 TGS domain VPBB_RS00790 PF01192 RNA polymerase Rpb6 VPBB_RS00795 PF00625 Guanylate kinase VPBB_RS00810 PF02472 Biopolymer transport protein ExbD/TolR VPBB_RS00815 PF01618 MotA/TolQ/ExbB proton channel family VPBB_RS00830 PF00593 TonB dependent receptor VPBB_RS00830 PF07715 TonB-dependent Receptor Plug Domain VPBB_RS00835 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS00840 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS00840 PF12911 N-terminal TM domain of oligopeptide transport permease C VPBB_RS00845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_RS00850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_RS00850 PF00005 ABC transporter VPBB_RS00855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_RS00855 PF00005 ABC transporter VPBB_RS00890 PF00075 RNase H VPBB_RS00930 PF04002 RadC-like JAB domain VPBB_RS00935 PF00145 C-5 cytosine-specific DNA methylase VPBB_RS00950 PF03755 YicC-like family, N-terminal region VPBB_RS00950 PF08340 Domain of unknown function (DUF1732) VPBB_RS00955 PF01138 3' exoribonuclease family, domain 1 VPBB_RS00955 PF03725 3' exoribonuclease family, domain 2 VPBB_RS00960 PF00156 Phosphoribosyl transferase domain VPBB_RS00965 PF03279 Bacterial lipid A biosynthesis acyltransferase VPBB_RS00970 PF00440 Bacterial regulatory proteins, tetR family VPBB_RS00975 PF02441 Flavoprotein VPBB_RS00975 PF04127 DNA / pantothenate metabolism flavoprotein VPBB_RS00980 PF00672 HAMP domain VPBB_RS00980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS00980 PF17200 Single Cache domain 2 VPBB_RS00985 PF04002 RadC-like JAB domain VPBB_RS00990 PF00830 Ribosomal L28 family VPBB_RS00995 PF00471 Ribosomal protein L33 VPBB_RS01000 PF00884 Sulfatase VPBB_RS01010 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VPBB_RS01010 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VPBB_RS01010 PF06827 Zinc finger found in FPG and IleRS VPBB_RS01015 PF01467 Cytidylyltransferase-like VPBB_RS01020 PF05686 Glycosyl transferase family 90 VPBB_RS01025 PF00535 Glycosyl transferase family 2 VPBB_RS01030 PF00535 Glycosyl transferase family 2 VPBB_RS01035 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VPBB_RS01040 PF01219 Prokaryotic diacylglycerol kinase VPBB_RS01050 PF16363 GDP-mannose 4,6 dehydratase VPBB_RS01055 PF00483 Nucleotidyl transferase VPBB_RS01060 PF05523 WxcM-like, C-terminal VPBB_RS01070 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VPBB_RS01090 PF01040 UbiA prenyltransferase family VPBB_RS01100 PF04030 D-arabinono-1,4-lactone oxidase VPBB_RS01100 PF01565 FAD binding domain VPBB_RS01115 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VPBB_RS01120 PF01531 Glycosyl transferase family 11 VPBB_RS01125 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VPBB_RS01135 PF03279 Bacterial lipid A biosynthesis acyltransferase VPBB_RS01140 PF01370 NAD dependent epimerase/dehydratase family VPBB_RS01145 PF06082 Exopolysaccharide biosynthesis protein YbjH VPBB_RS01180 PF02350 UDP-N-acetylglucosamine 2-epimerase VPBB_RS01185 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VPBB_RS01185 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VPBB_RS01185 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VPBB_RS01200 PF00534 Glycosyl transferases group 1 VPBB_RS01200 PF13579 Glycosyl transferase 4-like domain VPBB_RS01205 PF00534 Glycosyl transferases group 1 VPBB_RS01205 PF13439 Glycosyltransferase Family 4 VPBB_RS01220 PF16363 GDP-mannose 4,6 dehydratase VPBB_RS01225 PF01370 NAD dependent epimerase/dehydratase family VPBB_RS01230 PF00293 NUDIX domain VPBB_RS01235 PF00483 Nucleotidyl transferase VPBB_RS01235 PF01050 Mannose-6-phosphate isomerase VPBB_RS01240 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPBB_RS01240 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPBB_RS01240 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPBB_RS01240 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VPBB_RS01245 PF01238 Phosphomannose isomerase type I VPBB_RS01250 PF00535 Glycosyl transferase family 2 VPBB_RS01255 PF01370 NAD dependent epimerase/dehydratase family VPBB_RS01260 PF02397 Bacterial sugar transferase VPBB_RS01265 PF02719 Polysaccharide biosynthesis protein VPBB_RS01270 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VPBB_RS01270 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VPBB_RS01270 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VPBB_RS01275 PF00483 Nucleotidyl transferase VPBB_RS01285 PF00121 Triosephosphate isomerase VPBB_RS01305 PF08220 DeoR-like helix-turn-helix domain VPBB_RS01305 PF00455 DeoR C terminal sensor domain VPBB_RS01310 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VPBB_RS01315 PF06005 Cell division protein ZapB VPBB_RS01320 PF03737 Aldolase/RraA VPBB_RS01325 PF01040 UbiA prenyltransferase family VPBB_RS01330 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_RS01330 PF07724 AAA domain (Cdc48 subfamily) VPBB_RS01335 PF00227 Proteasome subunit VPBB_RS01345 PF00356 Bacterial regulatory proteins, lacI family VPBB_RS01350 PF00270 DEAD/DEAH box helicase VPBB_RS01350 PF00271 Helicase conserved C-terminal domain VPBB_RS01350 PF18074 Primosomal protein N C-terminal domain VPBB_RS01350 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VPBB_RS01350 PF17764 3′ DNA-binding domain (3′BD) VPBB_RS01355 PF01197 Ribosomal protein L31 VPBB_RS01360 PF00338 Ribosomal protein S10p/S20e VPBB_RS01365 PF00297 Ribosomal protein L3 VPBB_RS01370 PF00573 Ribosomal protein L4/L1 family VPBB_RS01375 PF00276 Ribosomal protein L23 VPBB_RS01380 PF03947 Ribosomal Proteins L2, C-terminal domain VPBB_RS01380 PF00181 Ribosomal Proteins L2, RNA binding domain VPBB_RS01385 PF00203 Ribosomal protein S19 VPBB_RS01390 PF00237 Ribosomal protein L22p/L17e VPBB_RS01395 PF00189 Ribosomal protein S3, C-terminal domain VPBB_RS01395 PF07650 KH domain VPBB_RS01400 PF00252 Ribosomal protein L16p/L10e VPBB_RS01405 PF00831 Ribosomal L29 protein VPBB_RS01410 PF00366 Ribosomal protein S17 VPBB_RS01415 PF00238 Ribosomal protein L14p/L23e VPBB_RS01420 PF00467 KOW motif VPBB_RS01420 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VPBB_RS01425 PF00673 ribosomal L5P family C-terminus VPBB_RS01425 PF00281 Ribosomal protein L5 VPBB_RS01430 PF00253 Ribosomal protein S14p/S29e VPBB_RS01435 PF00410 Ribosomal protein S8 VPBB_RS01440 PF00347 Ribosomal protein L6 VPBB_RS01445 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VPBB_RS01450 PF00333 Ribosomal protein S5, N-terminal domain VPBB_RS01450 PF03719 Ribosomal protein S5, C-terminal domain VPBB_RS01455 PF00327 Ribosomal protein L30p/L7e VPBB_RS01460 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VPBB_RS01465 PF00344 SecY translocase VPBB_RS01470 PF00444 Ribosomal protein L36 VPBB_RS01475 PF00416 Ribosomal protein S13/S18 VPBB_RS01480 PF00411 Ribosomal protein S11 VPBB_RS01485 PF00163 Ribosomal protein S4/S9 N-terminal domain VPBB_RS01485 PF01479 S4 domain VPBB_RS01490 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VPBB_RS01490 PF01000 RNA polymerase Rpb3/RpoA insert domain VPBB_RS01490 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VPBB_RS01495 PF01196 Ribosomal protein L17 VPBB_RS01505 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VPBB_RS01505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPBB_RS01515 PF13673 Acetyltransferase (GNAT) domain VPBB_RS01520 PF00270 DEAD/DEAH box helicase VPBB_RS01520 PF03880 DbpA RNA binding domain VPBB_RS01520 PF00271 Helicase conserved C-terminal domain VPBB_RS01530 PF02872 5'-nucleotidase, C-terminal domain VPBB_RS01530 PF00149 Calcineurin-like phosphoesterase VPBB_RS01535 PF10414 Sirohaem synthase dimerisation region VPBB_RS01535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPBB_RS01535 PF14824 Sirohaem biosynthesis protein central VPBB_RS01540 PF01507 Phosphoadenosine phosphosulfate reductase family VPBB_RS01545 PF00009 Elongation factor Tu GTP binding domain VPBB_RS01550 PF02080 TrkA-C domain VPBB_RS01550 PF03600 Citrate transporter VPBB_RS01575 PF00005 ABC transporter VPBB_RS01590 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VPBB_RS01595 PF06526 Protein of unknown function (DUF1107) VPBB_RS01600 PF01625 Peptide methionine sulfoxide reductase VPBB_RS01605 PF01103 Surface antigen VPBB_RS01605 PF17243 POTRA domain TamA domain 1 VPBB_RS01610 PF04357 TamB, inner membrane protein subunit of TAM complex VPBB_RS01615 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VPBB_RS01625 PF00719 Inorganic pyrophosphatase VPBB_RS01630 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VPBB_RS01635 PF02875 Mur ligase family, glutamate ligase domain VPBB_RS01635 PF08245 Mur ligase middle domain VPBB_RS01635 PF01225 Mur ligase family, catalytic domain VPBB_RS01640 PF02441 Flavoprotein VPBB_RS01650 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS01655 PF00005 ABC transporter VPBB_RS01670 PF16868 NMT1-like family VPBB_RS01675 PF02863 Arginine repressor, C-terminal domain VPBB_RS01675 PF01316 Arginine repressor, DNA binding domain VPBB_RS01680 PF00056 lactate/malate dehydrogenase, NAD binding domain VPBB_RS01680 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VPBB_RS01690 PF00348 Polyprenyl synthetase VPBB_RS01695 PF00829 Ribosomal prokaryotic L21 protein VPBB_RS01700 PF01016 Ribosomal L27 protein VPBB_RS01705 PF01018 GTP1/OBG VPBB_RS01705 PF01926 50S ribosome-binding GTPase VPBB_RS01710 PF06738 Putative threonine/serine exporter VPBB_RS01715 PF12821 Threonine/Serine exporter, ThrE VPBB_RS01720 PF00186 Dihydrofolate reductase VPBB_RS01725 PF00149 Calcineurin-like phosphoesterase VPBB_RS01730 PF04379 ApaG domain VPBB_RS01735 PF00398 Ribosomal RNA adenine dimethylase VPBB_RS01740 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VPBB_RS01745 PF09312 SurA N-terminal domain VPBB_RS01750 PF03968 OstA-like protein VPBB_RS01750 PF04453 LPS transport system D VPBB_RS01755 PF05099 Tellurite resistance protein TerB VPBB_RS01755 PF00226 DnaJ domain VPBB_RS01765 PF00694 Aconitase C-terminal domain VPBB_RS01770 PF00330 Aconitase family (aconitate hydratase) VPBB_RS01775 PF00180 Isocitrate/isopropylmalate dehydrogenase VPBB_RS01780 PF00682 HMGL-like VPBB_RS01780 PF08502 LeuA allosteric (dimerisation) domain VPBB_RS01790 PF01569 PAP2 superfamily VPBB_RS01800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS01800 PF03466 LysR substrate binding domain VPBB_RS01805 PF00501 AMP-binding enzyme VPBB_RS01810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VPBB_RS01810 PF00205 Thiamine pyrophosphate enzyme, central domain VPBB_RS01810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VPBB_RS01815 PF10369 Small subunit of acetolactate synthase VPBB_RS01820 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS01830 PF00224 Pyruvate kinase, barrel domain VPBB_RS01830 PF02887 Pyruvate kinase, alpha/beta domain VPBB_RS01835 PF00455 DeoR C terminal sensor domain VPBB_RS01835 PF08220 DeoR-like helix-turn-helix domain VPBB_RS01840 PF01380 SIS domain VPBB_RS01850 PF00072 Response regulator receiver domain VPBB_RS01850 PF00486 Transcriptional regulatory protein, C terminal VPBB_RS01855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS01855 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS01855 PF00672 HAMP domain VPBB_RS01860 PF00465 Iron-containing alcohol dehydrogenase VPBB_RS01865 PF02733 Dak1 domain VPBB_RS01870 PF02734 DAK2 domain VPBB_RS01875 PF05524 PEP-utilising enzyme, N-terminal VPBB_RS01875 PF02896 PEP-utilising enzyme, TIM barrel domain VPBB_RS01875 PF00391 PEP-utilising enzyme, mobile domain VPBB_RS01880 PF02954 Bacterial regulatory protein, Fis family VPBB_RS01880 PF00158 Sigma-54 interaction domain VPBB_RS01880 PF00989 PAS fold VPBB_RS01885 PF05068 Mannitol repressor VPBB_RS01890 PF08125 Mannitol dehydrogenase C-terminal domain VPBB_RS01890 PF01232 Mannitol dehydrogenase Rossmann domain VPBB_RS01895 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VPBB_RS01895 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPBB_RS01895 PF02378 Phosphotransferase system, EIIC VPBB_RS01925 PF12833 Helix-turn-helix domain VPBB_RS01935 PF03180 NLPA lipoprotein VPBB_RS01945 PF04546 Sigma-70, non-essential region VPBB_RS01945 PF00140 Sigma-70 factor, region 1.2 VPBB_RS01945 PF04542 Sigma-70 region 2 VPBB_RS01945 PF04539 Sigma-70 region 3 VPBB_RS01945 PF03979 Sigma-70 factor, region 1.1 VPBB_RS01945 PF04545 Sigma-70, region 4 VPBB_RS01950 PF10410 DnaB-helicase binding domain of primase VPBB_RS01950 PF08278 DNA primase DnaG DnaB-binding VPBB_RS01950 PF08275 DNA primase catalytic core, N-terminal domain VPBB_RS01950 PF01807 CHC2 zinc finger VPBB_RS01955 PF09424 Yqey-like protein VPBB_RS01960 PF01165 Ribosomal protein S21 VPBB_RS01965 PF00814 Glycoprotease family VPBB_RS01970 PF12697 Alpha/beta hydrolase family VPBB_RS01975 PF02660 Glycerol-3-phosphate acyltransferase VPBB_RS01980 PF02152 Dihydroneopterin aldolase VPBB_RS01985 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VPBB_RS01990 PF02673 Bacitracin resistance protein BacA VPBB_RS01995 PF01743 Poly A polymerase head domain VPBB_RS01995 PF01966 HD domain VPBB_RS01995 PF12627 Probable RNA and SrmB- binding site of polymerase A VPBB_RS02000 PF01471 Putative peptidoglycan binding domain VPBB_RS02000 PF13401 AAA domain VPBB_RS02010 PF08239 Bacterial SH3 domain VPBB_RS02015 PF01384 Phosphate transporter family VPBB_RS02020 PF01865 Protein of unknown function DUF47 VPBB_RS02025 PF01928 CYTH domain VPBB_RS02035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS02035 PF00672 HAMP domain VPBB_RS02040 PF03710 Glutamate-ammonia ligase adenylyltransferase VPBB_RS02040 PF08335 GlnD PII-uridylyltransferase VPBB_RS02045 PF00294 pfkB family carbohydrate kinase VPBB_RS02045 PF01467 Cytidylyltransferase-like VPBB_RS02050 PF02321 Outer membrane efflux protein VPBB_RS02055 PF00293 NUDIX domain VPBB_RS02060 PF06853 Protein of unknown function (DUF1249) VPBB_RS02065 PF00149 Calcineurin-like phosphoesterase VPBB_RS02070 PF05728 Uncharacterised protein family (UPF0227) VPBB_RS02075 PF01751 Toprim domain VPBB_RS02075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS02075 PF00986 DNA gyrase B subunit, carboxyl terminus VPBB_RS02075 PF00204 DNA gyrase B VPBB_RS02080 PF03989 DNA gyrase C-terminal domain, beta-propeller VPBB_RS02080 PF00521 DNA gyrase/topoisomerase IV, subunit A VPBB_RS02085 PF13180 PDZ domain VPBB_RS02090 PF00595 PDZ domain VPBB_RS02095 PF06295 Protein of unknown function (DUF1043) VPBB_RS02100 PF03969 AFG1-like ATPase VPBB_RS02105 PF00572 Ribosomal protein L13 VPBB_RS02110 PF00380 Ribosomal protein S9/S16 VPBB_RS02115 PF00355 Rieske [2Fe-2S] domain VPBB_RS02115 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VPBB_RS02120 PF00032 Cytochrome b(C-terminal)/b6/petD VPBB_RS02120 PF00033 Cytochrome b/b6/petB VPBB_RS02125 PF02167 Cytochrome C1 family VPBB_RS02130 PF00043 Glutathione S-transferase, C-terminal domain VPBB_RS02130 PF02798 Glutathione S-transferase, N-terminal domain VPBB_RS02135 PF04386 Stringent starvation protein B VPBB_RS02140 PF04972 BON domain VPBB_RS02145 PF13580 SIS domain VPBB_RS02150 PF02021 Uncharacterised protein family UPF0102 VPBB_RS02155 PF04348 LppC putative lipoprotein VPBB_RS02160 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPBB_RS02165 PF01795 MraW methylase family VPBB_RS02170 PF04999 Cell division protein FtsL VPBB_RS02175 PF03717 Penicillin-binding Protein dimerisation domain VPBB_RS02175 PF00905 Penicillin binding protein transpeptidase domain VPBB_RS02180 PF02875 Mur ligase family, glutamate ligase domain VPBB_RS02180 PF01225 Mur ligase family, catalytic domain VPBB_RS02180 PF08245 Mur ligase middle domain VPBB_RS02185 PF01225 Mur ligase family, catalytic domain VPBB_RS02185 PF08245 Mur ligase middle domain VPBB_RS02185 PF02875 Mur ligase family, glutamate ligase domain VPBB_RS02190 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VPBB_RS02190 PF00953 Glycosyl transferase family 4 VPBB_RS02195 PF08245 Mur ligase middle domain VPBB_RS02195 PF02875 Mur ligase family, glutamate ligase domain VPBB_RS02200 PF01098 Cell cycle protein VPBB_RS02205 PF03033 Glycosyltransferase family 28 N-terminal domain VPBB_RS02205 PF04101 Glycosyltransferase family 28 C-terminal domain VPBB_RS02210 PF01225 Mur ligase family, catalytic domain VPBB_RS02210 PF08245 Mur ligase middle domain VPBB_RS02210 PF02875 Mur ligase family, glutamate ligase domain VPBB_RS02215 PF03799 Cell division protein FtsQ VPBB_RS02215 PF08478 POTRA domain, FtsQ-type VPBB_RS02220 PF02491 SHS2 domain inserted in FTSA VPBB_RS02225 PF12327 FtsZ family, C-terminal domain VPBB_RS02225 PF00091 Tubulin/FtsZ family, GTPase domain VPBB_RS02230 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VPBB_RS02240 PF01043 SecA preprotein cross-linking domain VPBB_RS02240 PF07517 SecA DEAD-like domain VPBB_RS02240 PF07516 SecA Wing and Scaffold domain VPBB_RS02240 PF02810 SEC-C motif VPBB_RS02245 PF00293 NUDIX domain VPBB_RS02250 PF01113 Dihydrodipicolinate reductase, N-terminus VPBB_RS02250 PF05173 Dihydrodipicolinate reductase, C-terminus VPBB_RS02255 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VPBB_RS02255 PF00117 Glutamine amidotransferase class-I VPBB_RS02260 PF02142 MGS-like domain VPBB_RS02260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VPBB_RS02260 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VPBB_RS02275 PF01925 Sulfite exporter TauE/SafE VPBB_RS02280 PF03466 LysR substrate binding domain VPBB_RS02280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS02285 PF03458 UPF0126 domain VPBB_RS02290 PF01497 Periplasmic binding protein VPBB_RS02295 PF03186 CobD/Cbib protein VPBB_RS02295 PF17113 Regulatory signalling modulator protein AmpE VPBB_RS02300 PF01048 Phosphorylase superfamily VPBB_RS02310 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_RS02310 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VPBB_RS02315 PF00310 Glutamine amidotransferases class-II VPBB_RS02315 PF04898 Glutamate synthase central domain VPBB_RS02315 PF01645 Conserved region in glutamate synthase VPBB_RS02315 PF01493 GXGXG motif VPBB_RS02320 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_RS02320 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VPBB_RS02325 PF04898 Glutamate synthase central domain VPBB_RS02325 PF01645 Conserved region in glutamate synthase VPBB_RS02325 PF00310 Glutamine amidotransferases class-II VPBB_RS02325 PF01493 GXGXG motif VPBB_RS02330 PF16199 Radical_SAM C-terminal domain VPBB_RS02330 PF04055 Radical SAM superfamily VPBB_RS02335 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS02335 PF00360 Phytochrome region VPBB_RS02335 PF01590 GAF domain VPBB_RS02335 PF00563 EAL domain VPBB_RS02340 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS02340 PF00989 PAS fold VPBB_RS02340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS02340 PF00072 Response regulator receiver domain VPBB_RS02340 PF18415 Histidine kinase receptor ArcB trans-membrane domain VPBB_RS02340 PF01627 Hpt domain VPBB_RS02350 PF00486 Transcriptional regulatory protein, C terminal VPBB_RS02350 PF00072 Response regulator receiver domain VPBB_RS02360 PF03737 Aldolase/RraA VPBB_RS02370 PF01842 ACT domain VPBB_RS02370 PF00742 Homoserine dehydrogenase VPBB_RS02370 PF13840 ACT domain VPBB_RS02370 PF03447 Homoserine dehydrogenase, NAD binding domain VPBB_RS02370 PF00696 Amino acid kinase family VPBB_RS02375 PF00288 GHMP kinases N terminal domain VPBB_RS02375 PF08544 GHMP kinases C terminal VPBB_RS02380 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_RS02380 PF14821 Threonine synthase N terminus VPBB_RS02385 PF01228 Glycine radical VPBB_RS02390 PF01261 Xylose isomerase-like TIM barrel VPBB_RS02395 PF03167 Uracil DNA glycosylase superfamily VPBB_RS02410 PF01235 Sodium:alanine symporter family VPBB_RS02415 PF03883 Peroxide stress protein YaaA VPBB_RS02420 PF00270 DEAD/DEAH box helicase VPBB_RS02420 PF00271 Helicase conserved C-terminal domain VPBB_RS02425 PF05175 Methyltransferase small domain VPBB_RS02430 PF05525 Branched-chain amino acid transport protein VPBB_RS02435 PF00258 Flavodoxin VPBB_RS02440 PF00589 Phage integrase family VPBB_RS02440 PF02899 Phage integrase, N-terminal SAM-like domain VPBB_RS02445 PF10411 Disulfide bond isomerase protein N-terminus VPBB_RS02445 PF13098 Thioredoxin-like domain VPBB_RS02450 PF02272 DHHA1 domain VPBB_RS02450 PF01368 DHH family VPBB_RS02450 PF17768 RecJ OB domain VPBB_RS02455 PF03462 PCRF domain VPBB_RS02455 PF00472 RF-1 domain VPBB_RS02460 PF00152 tRNA synthetases class II (D, K and N) VPBB_RS02460 PF01336 OB-fold nucleic acid binding domain VPBB_RS02465 PF02954 Bacterial regulatory protein, Fis family VPBB_RS02465 PF00158 Sigma-54 interaction domain VPBB_RS02465 PF00072 Response regulator receiver domain VPBB_RS02475 PF00248 Aldo/keto reductase family VPBB_RS02485 PF02976 DNA mismatch repair enzyme MutH VPBB_RS02490 PF00293 NUDIX domain VPBB_RS02495 PF00391 PEP-utilising enzyme, mobile domain VPBB_RS02495 PF02896 PEP-utilising enzyme, TIM barrel domain VPBB_RS02495 PF05524 PEP-utilising enzyme, N-terminal VPBB_RS02495 PF01590 GAF domain VPBB_RS02500 PF01925 Sulfite exporter TauE/SafE VPBB_RS02505 PF01790 Prolipoprotein diacylglyceryl transferase VPBB_RS02510 PF00303 Thymidylate synthase VPBB_RS02520 PF02690 Na+/Pi-cotransporter VPBB_RS02525 PF03466 LysR substrate binding domain VPBB_RS02525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS02530 PF01022 Bacterial regulatory protein, arsR family VPBB_RS02535 PF01649 Ribosomal protein S20 VPBB_RS02540 PF03023 Lipid II flippase MurJ VPBB_RS02545 PF01687 Riboflavin kinase VPBB_RS02545 PF06574 FAD synthetase VPBB_RS02550 PF06827 Zinc finger found in FPG and IleRS VPBB_RS02550 PF00133 tRNA synthetases class I (I, L, M and V) VPBB_RS02550 PF08264 Anticodon-binding domain of tRNA VPBB_RS02555 PF01252 Signal peptidase (SPase) II VPBB_RS02560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPBB_RS02565 PF02401 LytB protein VPBB_RS02570 PF04397 LytTr DNA-binding domain VPBB_RS02570 PF00072 Response regulator receiver domain VPBB_RS02575 PF06580 Histidine kinase VPBB_RS02575 PF07694 5TMR of 5TMR-LYT VPBB_RS02580 PF02554 Carbon starvation protein CstA VPBB_RS02595 PF13580 SIS domain VPBB_RS02600 PF03702 Anhydro-N-acetylmuramic acid kinase VPBB_RS02605 PF00933 Glycosyl hydrolase family 3 N terminal domain VPBB_RS02610 PF00793 DAHP synthetase I family VPBB_RS02615 PF02153 Prephenate dehydrogenase VPBB_RS02615 PF01817 Chorismate mutase type II VPBB_RS02620 PF04225 Opacity-associated protein A LysM-like domain VPBB_RS02620 PF01551 Peptidase family M23 VPBB_RS02625 PF07238 PilZ domain VPBB_RS02630 PF00005 ABC transporter VPBB_RS02630 PF12848 ABC transporter VPBB_RS02635 PF01464 Transglycosylase SLT domain VPBB_RS02635 PF14718 Soluble lytic murein transglycosylase L domain VPBB_RS02640 PF01371 Trp repressor protein VPBB_RS02645 PF01931 Protein of unknown function DUF84 VPBB_RS02650 PF01817 Chorismate mutase type II VPBB_RS02650 PF00800 Prephenate dehydratase VPBB_RS02655 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VPBB_RS02660 PF01464 Transglycosylase SLT domain VPBB_RS02665 PF13525 Outer membrane lipoprotein VPBB_RS02670 PF01479 S4 domain VPBB_RS02670 PF00849 RNA pseudouridylate synthase VPBB_RS02675 PF02578 Multi-copper polyphenol oxidoreductase laccase VPBB_RS02680 PF10431 C-terminal, D2-small domain, of ClpB protein VPBB_RS02680 PF07724 AAA domain (Cdc48 subfamily) VPBB_RS02680 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_RS02680 PF02861 Clp amino terminal domain, pathogenicity island component VPBB_RS02680 PF17871 AAA lid domain VPBB_RS02725 PF03411 Penicillin-insensitive murein endopeptidase VPBB_RS02735 PF00037 4Fe-4S binding domain VPBB_RS02740 PF01136 Peptidase family U32 VPBB_RS02740 PF16325 Peptidase family U32 C-terminal domain VPBB_RS02745 PF04381 Putative exonuclease, RdgC VPBB_RS02750 PF00486 Transcriptional regulatory protein, C terminal VPBB_RS02750 PF00072 Response regulator receiver domain VPBB_RS02755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS02755 PF11808 Phosphate regulon sensor protein PhoR VPBB_RS02755 PF00989 PAS fold VPBB_RS02755 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS02760 PF12849 PBP superfamily domain VPBB_RS02765 PF02541 Ppx/GppA phosphatase family VPBB_RS02770 PF02503 Polyphosphate kinase middle domain VPBB_RS02770 PF13090 Polyphosphate kinase C-terminal domain 2 VPBB_RS02770 PF17941 Polyphosphate kinase C-terminal domain 1 VPBB_RS02770 PF13089 Polyphosphate kinase N-terminal domain VPBB_RS02775 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS02780 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS02785 PF00005 ABC transporter VPBB_RS02790 PF01895 PhoU domain VPBB_RS02795 PF03976 Polyphosphate kinase 2 (PPK2) VPBB_RS02800 PF03932 CutC family VPBB_RS02805 PF10417 C-terminal domain of 1-Cys peroxiredoxin VPBB_RS02805 PF00578 AhpC/TSA family VPBB_RS02810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS02810 PF03466 LysR substrate binding domain VPBB_RS02815 PF01274 Malate synthase VPBB_RS02820 PF00463 Isocitrate lyase family VPBB_RS02825 PF00571 CBS domain VPBB_RS02835 PF02547 Queuosine biosynthesis protein VPBB_RS02840 PF01702 Queuine tRNA-ribosyltransferase VPBB_RS02845 PF02699 Preprotein translocase subunit VPBB_RS02850 PF13721 SecD export protein N-terminal TM region VPBB_RS02850 PF07549 SecD/SecF GG Motif VPBB_RS02850 PF02355 Protein export membrane protein VPBB_RS02855 PF07549 SecD/SecF GG Motif VPBB_RS02855 PF02355 Protein export membrane protein VPBB_RS02860 PF00459 Inositol monophosphatase family VPBB_RS02865 PF00588 SpoU rRNA Methylase family VPBB_RS02870 PF02082 Transcriptional regulator VPBB_RS02875 PF00266 Aminotransferase class-V VPBB_RS02880 PF01592 NifU-like N terminal domain VPBB_RS02885 PF01521 Iron-sulphur cluster biosynthesis VPBB_RS02890 PF07743 HSCB C-terminal oligomerisation domain VPBB_RS02890 PF00226 DnaJ domain VPBB_RS02895 PF00012 Hsp70 protein VPBB_RS02900 PF00111 2Fe-2S iron-sulfur cluster binding domain VPBB_RS02905 PF04384 Iron-sulphur cluster assembly VPBB_RS02910 PF12404 Peptidase VPBB_RS02910 PF00883 Cytosol aminopeptidase family, catalytic domain VPBB_RS02915 PF00334 Nucleoside diphosphate kinase VPBB_RS02920 PF04055 Radical SAM superfamily VPBB_RS02925 PF13464 Domain of unknown function (DUF4115) VPBB_RS02930 PF04551 GcpE protein VPBB_RS02935 PF03129 Anticodon binding domain VPBB_RS02935 PF13393 Histidyl-tRNA synthetase VPBB_RS02940 PF09976 Tetratricopeptide repeat-like domain VPBB_RS02945 PF13360 PQQ-like domain VPBB_RS02950 PF01926 50S ribosome-binding GTPase VPBB_RS02950 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VPBB_RS02965 PF02601 Exonuclease VII, large subunit VPBB_RS02965 PF13742 OB-fold nucleic acid binding domain VPBB_RS02970 PF00478 IMP dehydrogenase / GMP reductase domain VPBB_RS02970 PF00571 CBS domain VPBB_RS02975 PF02540 NAD synthase VPBB_RS02975 PF00117 Glutamine amidotransferase class-I VPBB_RS02975 PF00958 GMP synthase C terminal domain VPBB_RS02980 PF03553 Na+/H+ antiporter family VPBB_RS02985 PF06483 Chitinase C VPBB_RS02985 PF00704 Glycosyl hydrolases family 18 VPBB_RS02990 PF01184 GPR1/FUN34/yaaH family VPBB_RS03000 PF01235 Sodium:alanine symporter family VPBB_RS03005 PF01266 FAD dependent oxidoreductase VPBB_RS03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS03010 PF03466 LysR substrate binding domain VPBB_RS03025 PF07969 Amidohydrolase family VPBB_RS03030 PF01053 Cys/Met metabolism PLP-dependent enzyme VPBB_RS03035 PF00202 Aminotransferase class-III VPBB_RS03055 PF00583 Acetyltransferase (GNAT) family VPBB_RS03055 PF00795 Carbon-nitrogen hydrolase VPBB_RS03060 PF03466 LysR substrate binding domain VPBB_RS03060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS03075 PF01661 Macro domain VPBB_RS03080 PF02796 Helix-turn-helix domain of resolvase VPBB_RS03080 PF00239 Resolvase, N terminal domain VPBB_RS03105 PF01668 SmpB protein VPBB_RS03110 PF03364 Polyketide cyclase / dehydrase and lipid transport VPBB_RS03115 PF03658 RnfH family Ubiquitin VPBB_RS03120 PF04355 SmpA / OmlA family VPBB_RS03125 PF02463 RecF/RecN/SMC N terminal domain VPBB_RS03135 PF01513 ATP-NAD kinase VPBB_RS03140 PF01025 GrpE VPBB_RS03145 PF00375 Sodium:dicarboxylate symporter family VPBB_RS03150 PF00012 Hsp70 protein VPBB_RS03155 PF00226 DnaJ domain VPBB_RS03155 PF01556 DnaJ C terminal domain VPBB_RS03155 PF00684 DnaJ central domain VPBB_RS03160 PF07963 Prokaryotic N-terminal methylation motif VPBB_RS03160 PF00114 Pilin (bacterial filament) VPBB_RS03165 PF00114 Pilin (bacterial filament) VPBB_RS03165 PF07963 Prokaryotic N-terminal methylation motif VPBB_RS03185 PF03806 AbgT putative transporter family VPBB_RS03190 PF14437 MafB19-like deaminase VPBB_RS03195 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_RS03195 PF01464 Transglycosylase SLT domain VPBB_RS03200 PF02769 AIR synthase related protein, C-terminal domain VPBB_RS03200 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VPBB_RS03200 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VPBB_RS03225 PF07687 Peptidase dimerisation domain VPBB_RS03225 PF01546 Peptidase family M20/M25/M40 VPBB_RS03230 PF00860 Permease family VPBB_RS03235 PF00156 Phosphoribosyl transferase domain VPBB_RS03240 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VPBB_RS03245 PF07417 Sigma factor-binding transcriptional regulator Crl VPBB_RS03250 PF00696 Amino acid kinase family VPBB_RS03250 PF01472 PUA domain VPBB_RS03255 PF00171 Aldehyde dehydrogenase family VPBB_RS03260 PF03477 ATP cone domain VPBB_RS03265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VPBB_RS03265 PF01872 RibD C-terminal domain VPBB_RS03270 PF00677 Lumazine binding domain VPBB_RS03275 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VPBB_RS03275 PF00925 GTP cyclohydrolase II VPBB_RS03280 PF00885 6,7-dimethyl-8-ribityllumazine synthase VPBB_RS03285 PF01029 NusB family VPBB_RS03290 PF00586 AIR synthase related protein, N-terminal domain VPBB_RS03290 PF02769 AIR synthase related protein, C-terminal domain VPBB_RS03295 PF04608 Phosphatidylglycerophosphatase A VPBB_RS03300 PF02779 Transketolase, pyrimidine binding domain VPBB_RS03300 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VPBB_RS03300 PF02780 Transketolase, C-terminal domain VPBB_RS03305 PF00348 Polyprenyl synthetase VPBB_RS03310 PF02609 Exonuclease VII small subunit VPBB_RS03315 PF01618 MotA/TolQ/ExbB proton channel family VPBB_RS03320 PF00691 OmpA family VPBB_RS03325 PF02568 Thiamine biosynthesis protein (ThiI) VPBB_RS03325 PF02926 THUMP domain VPBB_RS03330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS03330 PF03466 LysR substrate binding domain VPBB_RS03340 PF04241 Protein of unknown function (DUF423) VPBB_RS03345 PF01728 FtsJ-like methyltransferase VPBB_RS03345 PF18125 RlmM ferredoxin-like domain VPBB_RS03350 PF01223 DNA/RNA non-specific endonuclease VPBB_RS03355 PF01367 5'-3' exonuclease, C-terminal SAM fold VPBB_RS03355 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VPBB_RS03360 PF11892 Domain of unknown function (DUF3412) VPBB_RS03360 PF03641 Possible lysine decarboxylase VPBB_RS03360 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VPBB_RS03365 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS03375 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VPBB_RS03375 PF14489 QueF-like protein VPBB_RS03380 PF07348 Syd protein (SUKH-2) VPBB_RS03385 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VPBB_RS03390 PF03180 NLPA lipoprotein VPBB_RS03395 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS03400 PF00005 ABC transporter VPBB_RS03400 PF09383 NIL domain VPBB_RS03410 PF00356 Bacterial regulatory proteins, lacI family VPBB_RS03415 PF02378 Phosphotransferase system, EIIC VPBB_RS03415 PF00367 phosphotransferase system, EIIB VPBB_RS03420 PF16657 Maltogenic Amylase, C-terminal domain VPBB_RS03420 PF00128 Alpha amylase, catalytic domain VPBB_RS03435 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) VPBB_RS03435 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VPBB_RS03440 PF00464 Serine hydroxymethyltransferase VPBB_RS03445 PF04055 Radical SAM superfamily VPBB_RS03445 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VPBB_RS03450 PF03099 Biotin/lipoate A/B protein ligase family VPBB_RS03455 PF04359 Protein of unknown function (DUF493) VPBB_RS03460 PF00768 D-alanyl-D-alanine carboxypeptidase VPBB_RS03460 PF07943 Penicillin-binding protein 5, C-terminal domain VPBB_RS03465 PF05036 Sporulation related domain VPBB_RS03465 PF03330 Lytic transglycolase VPBB_RS03470 PF01098 Cell cycle protein VPBB_RS03475 PF00905 Penicillin binding protein transpeptidase domain VPBB_RS03475 PF03717 Penicillin-binding Protein dimerisation domain VPBB_RS03480 PF02590 Predicted SPOUT methyltransferase VPBB_RS03490 PF06144 DNA polymerase III, delta subunit VPBB_RS03490 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VPBB_RS03495 PF04390 Lipopolysaccharide-assembly VPBB_RS03500 PF13603 Leucyl-tRNA synthetase, Domain 2 VPBB_RS03500 PF00133 tRNA synthetases class I (I, L, M and V) VPBB_RS03500 PF08264 Anticodon-binding domain of tRNA VPBB_RS03505 PF07295 Zinc-ribbon containing domain VPBB_RS03510 PF00795 Carbon-nitrogen hydrolase VPBB_RS03515 PF00571 CBS domain VPBB_RS03515 PF03471 Transporter associated domain VPBB_RS03520 PF02130 Uncharacterized protein family UPF0054 VPBB_RS03525 PF02562 PhoH-like protein VPBB_RS03530 PF04055 Radical SAM superfamily VPBB_RS03530 PF01938 TRAM domain VPBB_RS03530 PF00919 Uncharacterized protein family UPF0004 VPBB_RS03535 PF01494 FAD binding domain VPBB_RS03640 PF06071 Protein of unknown function (DUF933) VPBB_RS03640 PF01926 50S ribosome-binding GTPase VPBB_RS03645 PF01195 Peptidyl-tRNA hydrolase VPBB_RS03650 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VPBB_RS03650 PF14572 Phosphoribosyl synthetase-associated domain VPBB_RS03655 PF08544 GHMP kinases C terminal VPBB_RS03655 PF00288 GHMP kinases N terminal domain VPBB_RS03660 PF03550 Outer membrane lipoprotein LolB VPBB_RS03665 PF01488 Shikimate / quinate 5-dehydrogenase VPBB_RS03665 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VPBB_RS03665 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VPBB_RS03670 PF03462 PCRF domain VPBB_RS03670 PF00472 RF-1 domain VPBB_RS03675 PF17827 PrmC N-terminal domain VPBB_RS03675 PF13847 Methyltransferase domain VPBB_RS03680 PF04247 Invasion gene expression up-regulator, SirB VPBB_RS03685 PF13369 Transglutaminase-like superfamily VPBB_RS03690 PF00793 DAHP synthetase I family VPBB_RS03695 PF00149 Calcineurin-like phosphoesterase VPBB_RS03695 PF02872 5'-nucleotidase, C-terminal domain VPBB_RS03700 PF04073 Aminoacyl-tRNA editing domain VPBB_RS03705 PF01479 S4 domain VPBB_RS03705 PF00849 RNA pseudouridylate synthase VPBB_RS03710 PF01713 Smr domain VPBB_RS03730 PF03173 Putative carbohydrate binding domain VPBB_RS03730 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VPBB_RS03730 PF00728 Glycosyl hydrolase family 20, catalytic domain VPBB_RS03730 PF02838 Glycosyl hydrolase family 20, domain 2 VPBB_RS03745 PF00403 Heavy-metal-associated domain VPBB_RS03750 PF13609 Gram-negative porin VPBB_RS03755 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VPBB_RS03760 PF00749 tRNA synthetases class I (E and Q), catalytic domain VPBB_RS03765 PF01389 OmpA-like transmembrane domain VPBB_RS03765 PF00691 OmpA family VPBB_RS03810 PF00072 Response regulator receiver domain VPBB_RS03810 PF01584 CheW-like domain VPBB_RS03815 PF03705 CheR methyltransferase, all-alpha domain VPBB_RS03815 PF01739 CheR methyltransferase, SAM binding domain VPBB_RS03820 PF00460 Flagella basal body rod protein VPBB_RS03825 PF00460 Flagella basal body rod protein VPBB_RS03825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_RS03830 PF13861 FlgD Tudor-like domain VPBB_RS03830 PF13860 FlgD Ig-like domain VPBB_RS03830 PF03963 Flagellar hook capping protein - N-terminal region VPBB_RS03835 PF00460 Flagella basal body rod protein VPBB_RS03835 PF07559 Flagellar basal body protein FlaE VPBB_RS03835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_RS03840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_RS03840 PF00460 Flagella basal body rod protein VPBB_RS03845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_RS03845 PF00460 Flagella basal body rod protein VPBB_RS03850 PF02107 Flagellar L-ring protein VPBB_RS03855 PF02119 Flagellar P-ring protein VPBB_RS03860 PF10135 Rod binding protein VPBB_RS03860 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VPBB_RS03865 PF07196 Flagellin hook IN motif VPBB_RS03865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_RS03870 PF00669 Bacterial flagellin N-terminal helical region VPBB_RS03875 PF00700 Bacterial flagellin C-terminal helical region VPBB_RS03875 PF07196 Flagellin hook IN motif VPBB_RS03875 PF00669 Bacterial flagellin N-terminal helical region VPBB_RS03880 PF00700 Bacterial flagellin C-terminal helical region VPBB_RS03880 PF00669 Bacterial flagellin N-terminal helical region VPBB_RS03880 PF07196 Flagellin hook IN motif VPBB_RS03885 PF00700 Bacterial flagellin C-terminal helical region VPBB_RS03885 PF07196 Flagellin hook IN motif VPBB_RS03885 PF00669 Bacterial flagellin N-terminal helical region VPBB_RS03890 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VPBB_RS03895 PF00391 PEP-utilising enzyme, mobile domain VPBB_RS03895 PF02896 PEP-utilising enzyme, TIM barrel domain VPBB_RS03895 PF05524 PEP-utilising enzyme, N-terminal VPBB_RS03900 PF00381 PTS HPr component phosphorylation site VPBB_RS03905 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_RS03915 PF04354 ZipA, C-terminal FtsZ-binding domain VPBB_RS03920 PF00533 BRCA1 C Terminus (BRCT) domain VPBB_RS03920 PF01653 NAD-dependent DNA ligase adenylation domain VPBB_RS03920 PF03120 NAD-dependent DNA ligase OB-fold domain VPBB_RS03920 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VPBB_RS03920 PF12826 Helix-hairpin-helix motif VPBB_RS03925 PF03573 outer membrane porin, OprD family VPBB_RS03935 PF01145 SPFH domain / Band 7 family VPBB_RS03935 PF16200 C-terminal region of band_7 VPBB_RS03940 PF00085 Thioredoxin VPBB_RS03945 PF00106 short chain dehydrogenase VPBB_RS03950 PF01370 NAD dependent epimerase/dehydratase family VPBB_RS03950 PF08338 Domain of unknown function (DUF1731) VPBB_RS03955 PF07556 Protein of unknown function (DUF1538) VPBB_RS03960 PF07556 Protein of unknown function (DUF1538) VPBB_RS03975 PF12850 Calcineurin-like phosphoesterase superfamily domain VPBB_RS03990 PF17323 Trans-membrane regulatory protein ToxS VPBB_RS03995 PF00486 Transcriptional regulatory protein, C terminal VPBB_RS04000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS04000 PF00183 Hsp90 protein VPBB_RS04005 PF05191 Adenylate kinase, active site lid VPBB_RS04010 PF00762 Ferrochelatase VPBB_RS04015 PF00854 POT family VPBB_RS04020 PF02357 Transcription termination factor nusG VPBB_RS04025 PF13537 Glutamine amidotransferase domain VPBB_RS04025 PF00733 Asparagine synthase VPBB_RS04030 PF00999 Sodium/hydrogen exchanger family VPBB_RS04030 PF02254 TrkA-N domain VPBB_RS04035 PF00480 ROK family VPBB_RS04035 PF01047 MarR family VPBB_RS04040 PF01979 Amidohydrolase family VPBB_RS04045 PF00367 phosphotransferase system, EIIB VPBB_RS04045 PF02378 Phosphotransferase system, EIIC VPBB_RS04050 PF00749 tRNA synthetases class I (E and Q), catalytic domain VPBB_RS04050 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VPBB_RS04055 PF01475 Ferric uptake regulator family VPBB_RS04060 PF01118 Semialdehyde dehydrogenase, NAD binding domain VPBB_RS04060 PF02774 Semialdehyde dehydrogenase, dimerisation domain VPBB_RS04065 PF00258 Flavodoxin VPBB_RS04075 PF12697 Alpha/beta hydrolase family VPBB_RS04080 PF03925 SeqA protein C-terminal domain VPBB_RS04080 PF17206 SeqA protein N-terminal domain VPBB_RS04085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPBB_RS04085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPBB_RS04085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPBB_RS04085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VPBB_RS04095 PF01784 NIF3 (NGG1p interacting factor 3) VPBB_RS04100 PF00285 Citrate synthase, C-terminal domain VPBB_RS04105 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VPBB_RS04110 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VPBB_RS04115 PF02910 Fumarate reductase flavoprotein C-term VPBB_RS04115 PF00890 FAD binding domain VPBB_RS04120 PF13085 2Fe-2S iron-sulfur cluster binding domain VPBB_RS04125 PF02779 Transketolase, pyrimidine binding domain VPBB_RS04125 PF16078 2-oxoglutarate dehydrogenase N-terminus VPBB_RS04125 PF16870 2-oxoglutarate dehydrogenase C-terminal VPBB_RS04125 PF00676 Dehydrogenase E1 component VPBB_RS04130 PF02817 e3 binding domain VPBB_RS04130 PF00364 Biotin-requiring enzyme VPBB_RS04130 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VPBB_RS04135 PF08442 ATP-grasp domain VPBB_RS04135 PF00549 CoA-ligase VPBB_RS04140 PF00549 CoA-ligase VPBB_RS04140 PF02629 CoA binding domain VPBB_RS04145 PF00950 ABC 3 transport family VPBB_RS04150 PF00005 ABC transporter VPBB_RS04155 PF01297 Zinc-uptake complex component A periplasmic VPBB_RS04160 PF02311 AraC-like ligand binding domain VPBB_RS04160 PF12833 Helix-turn-helix domain VPBB_RS04165 PF04023 FeoA domain VPBB_RS04170 PF07664 Ferrous iron transport protein B C terminus VPBB_RS04170 PF17910 FeoB cytosolic helical domain VPBB_RS04170 PF02421 Ferrous iron transport protein B VPBB_RS04170 PF07670 Nucleoside recognition VPBB_RS04185 PF03485 Arginyl tRNA synthetase N terminal domain VPBB_RS04185 PF05746 DALR anticodon binding domain VPBB_RS04185 PF00750 tRNA synthetases class I (R) VPBB_RS04190 PF06185 YecM protein VPBB_RS04195 PF00551 Formyl transferase VPBB_RS04195 PF01842 ACT domain VPBB_RS04200 PF13307 Helicase C-terminal domain VPBB_RS04200 PF04851 Type III restriction enzyme, res subunit VPBB_RS04205 PF00814 Glycoprotease family VPBB_RS04220 PF00561 alpha/beta hydrolase fold VPBB_RS04225 PF00501 AMP-binding enzyme VPBB_RS04225 PF13193 AMP-binding enzyme C-terminal domain VPBB_RS04230 PF00570 HRDC domain VPBB_RS04230 PF01612 3'-5' exonuclease VPBB_RS04235 PF03776 Septum formation topological specificity factor MinE VPBB_RS04240 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VPBB_RS04245 PF05209 Septum formation inhibitor MinC, N-terminal domain VPBB_RS04245 PF03775 Septum formation inhibitor MinC, C-terminal domain VPBB_RS04250 PF05166 YcgL domain VPBB_RS04255 PF13406 Transglycosylase SLT domain VPBB_RS04260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS04260 PF03466 LysR substrate binding domain VPBB_RS04265 PF07662 Na+ dependent nucleoside transporter C-terminus VPBB_RS04265 PF07670 Nucleoside recognition VPBB_RS04265 PF01773 Na+ dependent nucleoside transporter N-terminus VPBB_RS04270 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VPBB_RS04270 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VPBB_RS04285 PF00239 Resolvase, N terminal domain VPBB_RS04285 PF02796 Helix-turn-helix domain of resolvase VPBB_RS04300 PF00005 ABC transporter VPBB_RS04310 PF00109 Beta-ketoacyl synthase, N-terminal domain VPBB_RS04310 PF02801 Beta-ketoacyl synthase, C-terminal domain VPBB_RS04320 PF07977 FabA-like domain VPBB_RS04325 PF00109 Beta-ketoacyl synthase, N-terminal domain VPBB_RS04325 PF02801 Beta-ketoacyl synthase, C-terminal domain VPBB_RS04350 PF00221 Aromatic amino acid lyase VPBB_RS04355 PF00535 Glycosyl transferase family 2 VPBB_RS04360 PF07977 FabA-like domain VPBB_RS04375 PF00550 Phosphopantetheine attachment site VPBB_RS04380 PF00550 Phosphopantetheine attachment site VPBB_RS04405 PF04820 Tryptophan halogenase VPBB_RS04415 PF03471 Transporter associated domain VPBB_RS04415 PF01595 Cyclin M transmembrane N-terminal domain VPBB_RS04415 PF00571 CBS domain VPBB_RS04420 PF00271 Helicase conserved C-terminal domain VPBB_RS04420 PF00270 DEAD/DEAH box helicase VPBB_RS04425 PF02080 TrkA-C domain VPBB_RS04425 PF02254 TrkA-N domain VPBB_RS04430 PF02386 Cation transport protein VPBB_RS04445 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VPBB_RS04450 PF03480 Bacterial extracellular solute-binding protein, family 7 VPBB_RS04455 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VPBB_RS04460 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VPBB_RS04470 PF00072 Response regulator receiver domain VPBB_RS04470 PF02954 Bacterial regulatory protein, Fis family VPBB_RS04470 PF00158 Sigma-54 interaction domain VPBB_RS04475 PF02743 Cache domain VPBB_RS04475 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS04475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS04485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPBB_RS04485 PF05697 Bacterial trigger factor protein (TF) VPBB_RS04485 PF05698 Bacterial trigger factor protein (TF) C-terminus VPBB_RS04490 PF00574 Clp protease VPBB_RS04495 PF06689 ClpX C4-type zinc finger VPBB_RS04495 PF10431 C-terminal, D2-small domain, of ClpB protein VPBB_RS04495 PF07724 AAA domain (Cdc48 subfamily) VPBB_RS04500 PF02190 ATP-dependent protease La (LON) substrate-binding domain VPBB_RS04500 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_RS04500 PF05362 Lon protease (S16) C-terminal proteolytic domain VPBB_RS04505 PF00216 Bacterial DNA-binding protein VPBB_RS04510 PF13145 PPIC-type PPIASE domain VPBB_RS04530 PF13286 Phosphohydrolase-associated domain VPBB_RS04530 PF01966 HD domain VPBB_RS04540 PF00155 Aminotransferase class I and II VPBB_RS04545 PF00425 chorismate binding enzyme VPBB_RS04550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VPBB_RS04550 PF16582 Middle domain of thiamine pyrophosphate VPBB_RS04550 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VPBB_RS04555 PF12697 Alpha/beta hydrolase family VPBB_RS04560 PF00378 Enoyl-CoA hydratase/isomerase VPBB_RS04565 PF13378 Enolase C-terminal domain-like VPBB_RS04570 PF00501 AMP-binding enzyme VPBB_RS04570 PF13193 AMP-binding enzyme C-terminal domain VPBB_RS04580 PF03601 Conserved hypothetical protein 698 VPBB_RS04585 PF07690 Major Facilitator Superfamily VPBB_RS04620 PF13533 Biotin-lipoyl like VPBB_RS04625 PF00873 AcrB/AcrD/AcrF family VPBB_RS04645 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_RS04650 PF01037 Lrp/AsnC ligand binding domain VPBB_RS04650 PF13404 AsnC-type helix-turn-helix domain VPBB_RS04665 PF09619 Type III secretion system lipoprotein chaperone (YscW) VPBB_RS04670 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VPBB_RS04680 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS04680 PF17152 Periplasmic sensor domain VPBB_RS04685 PF08032 RNA 2'-O ribose methyltransferase substrate binding VPBB_RS04685 PF00588 SpoU rRNA Methylase family VPBB_RS04690 PF11953 Domain of unknown function (DUF3470) VPBB_RS04690 PF00037 4Fe-4S binding domain VPBB_RS04700 PF00571 CBS domain VPBB_RS04700 PF00478 IMP dehydrogenase / GMP reductase domain VPBB_RS04705 PF00403 Heavy-metal-associated domain VPBB_RS04710 PF01048 Phosphorylase superfamily VPBB_RS04720 PF00672 HAMP domain VPBB_RS04720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS04725 PF01230 HIT domain VPBB_RS04740 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VPBB_RS04740 PF13036 Peptidoglycan-synthase activator LpoB VPBB_RS04750 PF05728 Uncharacterised protein family (UPF0227) VPBB_RS04755 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_RS04770 PF03461 TRCF domain VPBB_RS04770 PF17757 UvrB interaction domain VPBB_RS04770 PF00270 DEAD/DEAH box helicase VPBB_RS04770 PF02559 CarD-like/TRCF domain VPBB_RS04770 PF00271 Helicase conserved C-terminal domain VPBB_RS04780 PF02687 FtsX-like permease family VPBB_RS04780 PF12704 MacB-like periplasmic core domain VPBB_RS04785 PF00005 ABC transporter VPBB_RS04790 PF12704 MacB-like periplasmic core domain VPBB_RS04790 PF02687 FtsX-like permease family VPBB_RS04800 PF00753 Metallo-beta-lactamase superfamily VPBB_RS04800 PF13567 Domain of unknown function (DUF4131) VPBB_RS04800 PF03772 Competence protein VPBB_RS04805 PF00664 ABC transporter transmembrane region VPBB_RS04805 PF00005 ABC transporter VPBB_RS04810 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VPBB_RS04815 PF03966 Trm112p-like protein VPBB_RS04820 PF02348 Cytidylyltransferase VPBB_RS04825 PF04293 SpoVR like protein VPBB_RS04830 PF04285 Protein of unknown function (DUF444) VPBB_RS04835 PF06798 PrkA serine protein kinase C-terminal domain VPBB_RS04835 PF08298 PrkA AAA domain VPBB_RS04840 PF03887 YfbU domain VPBB_RS04850 PF04055 Radical SAM superfamily VPBB_RS04860 PF02901 Pyruvate formate lyase-like VPBB_RS04860 PF01228 Glycine radical VPBB_RS04875 PF00005 ABC transporter VPBB_RS04880 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_RS04885 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS04890 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS04900 PF03372 Endonuclease/Exonuclease/phosphatase family VPBB_RS04905 PF10689 Protein of unknown function (DUF2496) VPBB_RS04910 PF07445 Primosomal replication protein priC VPBB_RS04915 PF01925 Sulfite exporter TauE/SafE VPBB_RS04920 PF06733 DEAD_2 VPBB_RS04920 PF13307 Helicase C-terminal domain VPBB_RS04930 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VPBB_RS04935 PF00849 RNA pseudouridylate synthase VPBB_RS04940 PF03971 Monomeric isocitrate dehydrogenase VPBB_RS04945 PF00313 'Cold-shock' DNA-binding domain VPBB_RS04950 PF02617 ATP-dependent Clp protease adaptor protein ClpS VPBB_RS04955 PF17871 AAA lid domain VPBB_RS04955 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_RS04955 PF07724 AAA domain (Cdc48 subfamily) VPBB_RS04955 PF02861 Clp amino terminal domain, pathogenicity island component VPBB_RS04955 PF10431 C-terminal, D2-small domain, of ClpB protein VPBB_RS04965 PF01176 Translation initiation factor 1A / IF-1 VPBB_RS04970 PF04376 Arginine-tRNA-protein transferase, N terminus VPBB_RS04970 PF04377 Arginine-tRNA-protein transferase, C terminus VPBB_RS04975 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VPBB_RS04985 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VPBB_RS04990 PF10692 Protein of unknown function (DUF2498) VPBB_RS04995 PF08272 Topoisomerase I zinc-ribbon-like VPBB_RS04995 PF01396 Topoisomerase DNA binding C4 zinc finger VPBB_RS04995 PF01751 Toprim domain VPBB_RS04995 PF01131 DNA topoisomerase VPBB_RS05000 PF00483 Nucleotidyl transferase VPBB_RS05005 PF00534 Glycosyl transferases group 1 VPBB_RS05005 PF08323 Starch synthase catalytic domain VPBB_RS05025 PF04994 TfoX C-terminal domain VPBB_RS05025 PF04993 TfoX N-terminal domain VPBB_RS05030 PF00356 Bacterial regulatory proteins, lacI family VPBB_RS05035 PF02613 Nitrate reductase delta subunit VPBB_RS05040 PF00486 Transcriptional regulatory protein, C terminal VPBB_RS05040 PF00072 Response regulator receiver domain VPBB_RS05045 PF02698 DUF218 domain VPBB_RS05050 PF13847 Methyltransferase domain VPBB_RS05055 PF17192 MukF middle domain VPBB_RS05055 PF03882 MukF winged-helix domain VPBB_RS05055 PF17193 MukF C-terminal domain VPBB_RS05060 PF04288 MukE-like family VPBB_RS05065 PF16330 MukB hinge domain VPBB_RS05065 PF04310 MukB N-terminal VPBB_RS05070 PF18030 RimK PreATP-grasp domain VPBB_RS05070 PF08443 RimK-like ATP-grasp domain VPBB_RS05080 PF08443 RimK-like ATP-grasp domain VPBB_RS05080 PF18030 RimK PreATP-grasp domain VPBB_RS05085 PF08003 Protein of unknown function (DUF1698) VPBB_RS05090 PF13649 Methyltransferase domain VPBB_RS05095 PF01904 Protein of unknown function DUF72 VPBB_RS05100 PF02938 GAD domain VPBB_RS05100 PF00152 tRNA synthetases class II (D, K and N) VPBB_RS05100 PF01336 OB-fold nucleic acid binding domain VPBB_RS05105 PF02075 Crossover junction endodeoxyribonuclease RuvC VPBB_RS05110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS05110 PF02203 Tar ligand binding domain homologue VPBB_RS05110 PF00672 HAMP domain VPBB_RS05115 PF07499 RuvA, C-terminal domain VPBB_RS05115 PF01330 RuvA N terminal domain VPBB_RS05120 PF05496 Holliday junction DNA helicase RuvB P-loop domain VPBB_RS05120 PF17864 RuvB AAA lid domain VPBB_RS05120 PF05491 RuvB C-terminal winged helix domain VPBB_RS05125 PF01654 Cytochrome bd terminal oxidase subunit I VPBB_RS05130 PF02322 Cytochrome bd terminal oxidase subunit II VPBB_RS05145 PF03061 Thioesterase superfamily VPBB_RS05150 PF01618 MotA/TolQ/ExbB proton channel family VPBB_RS05155 PF02472 Biopolymer transport protein ExbD/TolR VPBB_RS05165 PF04052 TolB amino-terminal domain VPBB_RS05165 PF07676 WD40-like Beta Propeller Repeat VPBB_RS05170 PF00691 OmpA family VPBB_RS05175 PF16331 TolA binding protein trimerisation VPBB_RS05175 PF13174 Tetratricopeptide repeat VPBB_RS05180 PF02445 Quinolinate synthetase A protein VPBB_RS05190 PF03994 Domain of Unknown Function (DUF350) VPBB_RS05200 PF03738 Glutathionylspermidine synthase preATP-grasp VPBB_RS05210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS05210 PF09308 LuxQ, periplasmic VPBB_RS05210 PF00072 Response regulator receiver domain VPBB_RS05210 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS05215 PF06610 L-alanine exporter VPBB_RS05225 PF12729 Four helix bundle sensory module for signal transduction VPBB_RS05225 PF00672 HAMP domain VPBB_RS05225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS05230 PF00529 HlyD membrane-fusion protein of T1SS VPBB_RS05230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_RS05235 PF00873 AcrB/AcrD/AcrF family VPBB_RS05250 PF00579 tRNA synthetases class I (W and Y) VPBB_RS05260 PF03372 Endonuclease/Exonuclease/phosphatase family VPBB_RS05265 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VPBB_RS05275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS05275 PF03466 LysR substrate binding domain VPBB_RS05285 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VPBB_RS05285 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VPBB_RS05290 PF01037 Lrp/AsnC ligand binding domain VPBB_RS05295 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VPBB_RS05295 PF17854 FtsK alpha domain VPBB_RS05295 PF09397 Ftsk gamma domain VPBB_RS05295 PF01580 FtsK/SpoIIIE family VPBB_RS05300 PF03548 Outer membrane lipoprotein carrier protein LolA VPBB_RS05305 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_RS05305 PF16193 AAA C-terminal domain VPBB_RS05305 PF12002 MgsA AAA+ ATPase C terminal VPBB_RS05310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VPBB_RS05310 PF02403 Seryl-tRNA synthetase N-terminal domain VPBB_RS05325 PF01258 Prokaryotic dksA/traR C4-type zinc finger VPBB_RS05330 PF00202 Aminotransferase class-III VPBB_RS05335 PF06968 Biotin and Thiamin Synthesis associated domain VPBB_RS05335 PF04055 Radical SAM superfamily VPBB_RS05340 PF00155 Aminotransferase class I and II VPBB_RS05345 PF08241 Methyltransferase domain VPBB_RS05355 PF01435 Peptidase family M48 VPBB_RS05365 PF00106 short chain dehydrogenase VPBB_RS05400 PF08328 Adenylosuccinate lyase C-terminal VPBB_RS05400 PF00206 Lyase VPBB_RS05405 PF04356 Protein of unknown function (DUF489) VPBB_RS05420 PF00294 pfkB family carbohydrate kinase VPBB_RS05425 PF00816 H-NS histone family VPBB_RS05430 PF03553 Na+/H+ antiporter family VPBB_RS05440 PF00072 Response regulator receiver domain VPBB_RS05440 PF02954 Bacterial regulatory protein, Fis family VPBB_RS05440 PF00158 Sigma-54 interaction domain VPBB_RS05445 PF08029 HisG, C-terminal domain VPBB_RS05445 PF01634 ATP phosphoribosyltransferase VPBB_RS05450 PF00815 Histidinol dehydrogenase VPBB_RS05455 PF00155 Aminotransferase class I and II VPBB_RS05460 PF08645 Polynucleotide kinase 3 phosphatase VPBB_RS05460 PF00475 Imidazoleglycerol-phosphate dehydratase VPBB_RS05465 PF00117 Glutamine amidotransferase class-I VPBB_RS05470 PF00977 Histidine biosynthesis protein VPBB_RS05475 PF00977 Histidine biosynthesis protein VPBB_RS05480 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VPBB_RS05480 PF01502 Phosphoribosyl-AMP cyclohydrolase VPBB_RS05485 PF02810 SEC-C motif VPBB_RS05490 PF08668 HDOD domain VPBB_RS05490 PF00563 EAL domain VPBB_RS05495 PF00149 Calcineurin-like phosphoesterase VPBB_RS05500 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VPBB_RS05505 PF09190 DALR domain VPBB_RS05505 PF01406 tRNA synthetases class I (C) catalytic domain VPBB_RS05510 PF00265 Thymidine kinase VPBB_RS05515 PF02698 DUF218 domain VPBB_RS05540 PF01226 Formate/nitrite transporter VPBB_RS05545 PF03649 Uncharacterised protein family (UPF0014) VPBB_RS05550 PF06796 Periplasmic nitrate reductase protein NapE VPBB_RS05555 PF03264 NapC/NirT cytochrome c family, N-terminal region VPBB_RS05560 PF00384 Molybdopterin oxidoreductase VPBB_RS05560 PF01568 Molydopterin dinucleotide binding domain VPBB_RS05560 PF18364 Molybdopterin oxidoreductase N-terminal domain VPBB_RS05565 PF16875 Glycosyl hydrolase family 36 N-terminal domain VPBB_RS05565 PF16874 Glycosyl hydrolase family 36 C-terminal domain VPBB_RS05575 PF01368 DHH family VPBB_RS05575 PF02833 DHHA2 domain VPBB_RS05585 PF00005 ABC transporter VPBB_RS05590 PF00005 ABC transporter VPBB_RS05590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_RS05595 PF12911 N-terminal TM domain of oligopeptide transport permease C VPBB_RS05595 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS05600 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS05605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_RS05610 PF02954 Bacterial regulatory protein, Fis family VPBB_RS05610 PF00158 Sigma-54 interaction domain VPBB_RS05615 PF04012 PspA/IM30 family VPBB_RS05620 PF06667 Phage shock protein B VPBB_RS05625 PF04024 PspC domain VPBB_RS05630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_RS05635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_RS05640 PF00873 AcrB/AcrD/AcrF family VPBB_RS05645 PF03352 Methyladenine glycosylase VPBB_RS05650 PF03280 Proteobacterial lipase chaperone protein VPBB_RS05655 PF00561 alpha/beta hydrolase fold VPBB_RS05660 PF01053 Cys/Met metabolism PLP-dependent enzyme VPBB_RS05665 PF13091 PLD-like domain VPBB_RS05665 PF13396 Phospholipase_D-nuclease N-terminal VPBB_RS05670 PF00209 Sodium:neurotransmitter symporter family VPBB_RS05675 PF00672 HAMP domain VPBB_RS05675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS05675 PF12729 Four helix bundle sensory module for signal transduction VPBB_RS05680 PF00849 RNA pseudouridylate synthase VPBB_RS05690 PF00175 Oxidoreductase NAD-binding domain VPBB_RS05690 PF00970 Oxidoreductase FAD-binding domain VPBB_RS05690 PF00111 2Fe-2S iron-sulfur cluster binding domain VPBB_RS05695 PF03063 Prismane/CO dehydrogenase family VPBB_RS05700 PF01590 GAF domain VPBB_RS05700 PF00158 Sigma-54 interaction domain VPBB_RS05710 PF01066 CDP-alcohol phosphatidyltransferase VPBB_RS05715 PF00005 ABC transporter VPBB_RS05720 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS05725 PF13416 Bacterial extracellular solute-binding protein VPBB_RS05730 PF09335 SNARE associated Golgi protein VPBB_RS05740 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_RS05740 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VPBB_RS05750 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS05750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS05755 PF00072 Response regulator receiver domain VPBB_RS05755 PF00196 Bacterial regulatory proteins, luxR family VPBB_RS05765 PF06945 Protein of unknown function (DUF1289) VPBB_RS05775 PF00149 Calcineurin-like phosphoesterase VPBB_RS05775 PF02872 5'-nucleotidase, C-terminal domain VPBB_RS05790 PF01386 Ribosomal L25p family VPBB_RS05795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS05800 PF00072 Response regulator receiver domain VPBB_RS05800 PF00486 Transcriptional regulatory protein, C terminal VPBB_RS05810 PF04851 Type III restriction enzyme, res subunit VPBB_RS05810 PF00271 Helicase conserved C-terminal domain VPBB_RS05815 PF01479 S4 domain VPBB_RS05815 PF00849 RNA pseudouridylate synthase VPBB_RS05820 PF07690 Major Facilitator Superfamily VPBB_RS05835 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VPBB_RS05850 PF03264 NapC/NirT cytochrome c family, N-terminal region VPBB_RS05855 PF13460 NAD(P)H-binding VPBB_RS05855 PF11066 Protein of unknown function (DUF2867) VPBB_RS05860 PF01554 MatE VPBB_RS05865 PF00005 ABC transporter VPBB_RS05880 PF06965 Na+/H+ antiporter 1 VPBB_RS05885 PF16295 Tetracyclin repressor-like, C-terminal domain VPBB_RS05885 PF00440 Bacterial regulatory proteins, tetR family VPBB_RS05890 PF02770 Acyl-CoA dehydrogenase, middle domain VPBB_RS05890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VPBB_RS05890 PF09317 Domain of unknown function (DUF1974) VPBB_RS05890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VPBB_RS05895 PF12241 Trans-2-enoyl-CoA reductase catalytic region VPBB_RS05895 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VPBB_RS05895 PF07055 Enoyl reductase FAD binding domain VPBB_RS05900 PF02080 TrkA-C domain VPBB_RS05900 PF06826 Predicted Permease Membrane Region VPBB_RS05905 PF00462 Glutaredoxin VPBB_RS05910 PF00465 Iron-containing alcohol dehydrogenase VPBB_RS05915 PF01418 Helix-turn-helix domain, rpiR family VPBB_RS05915 PF01380 SIS domain VPBB_RS05920 PF00282 Pyridoxal-dependent decarboxylase conserved domain VPBB_RS05930 PF03956 Lysine exporter LysO VPBB_RS05940 PF04993 TfoX N-terminal domain VPBB_RS05940 PF04994 TfoX C-terminal domain VPBB_RS05955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS05955 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_RS05955 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS05965 PF00266 Aminotransferase class-V VPBB_RS05970 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_RS05975 PF00664 ABC transporter transmembrane region VPBB_RS05975 PF00005 ABC transporter VPBB_RS05980 PF00005 ABC transporter VPBB_RS05980 PF00664 ABC transporter transmembrane region VPBB_RS05985 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_RS05995 PF00266 Aminotransferase class-V VPBB_RS06005 PF00072 Response regulator receiver domain VPBB_RS06005 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS06010 PF00939 Sodium:sulfate symporter transmembrane region VPBB_RS06015 PF02698 DUF218 domain VPBB_RS06020 PF03949 Malic enzyme, NAD binding domain VPBB_RS06020 PF00390 Malic enzyme, N-terminal domain VPBB_RS06025 PF08482 ATP-dependent helicase C-terminal VPBB_RS06025 PF04408 Helicase associated domain (HA2) VPBB_RS06025 PF00271 Helicase conserved C-terminal domain VPBB_RS06025 PF00270 DEAD/DEAH box helicase VPBB_RS06030 PF02253 Phospholipase A1 VPBB_RS06040 PF16655 PhoD-like phosphatase, N-terminal domain VPBB_RS06040 PF09423 PhoD-like phosphatase VPBB_RS06045 PF01259 SAICAR synthetase VPBB_RS06065 PF00691 OmpA family VPBB_RS06065 PF05736 OprF membrane domain VPBB_RS06080 PF02913 FAD linked oxidases, C-terminal domain VPBB_RS06080 PF01565 FAD binding domain VPBB_RS06080 PF13183 4Fe-4S dicluster domain VPBB_RS06085 PF04191 Phospholipid methyltransferase VPBB_RS06095 PF00221 Aromatic amino acid lyase VPBB_RS06100 PF17392 Urocanase C-terminal domain VPBB_RS06100 PF17391 Urocanase N-terminal domain VPBB_RS06100 PF01175 Urocanase Rossmann-like domain VPBB_RS06105 PF00491 Arginase family VPBB_RS06110 PF01979 Amidohydrolase family VPBB_RS06115 PF00392 Bacterial regulatory proteins, gntR family VPBB_RS06115 PF07702 UTRA domain VPBB_RS06130 PF03129 Anticodon binding domain VPBB_RS06130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VPBB_RS06130 PF02824 TGS domain VPBB_RS06130 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VPBB_RS06135 PF00707 Translation initiation factor IF-3, C-terminal domain VPBB_RS06135 PF05198 Translation initiation factor IF-3, N-terminal domain VPBB_RS06140 PF01632 Ribosomal protein L35 VPBB_RS06145 PF00453 Ribosomal protein L20 VPBB_RS06150 PF01906 Putative heavy-metal-binding VPBB_RS06180 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS06180 PF17158 Membrane-associated sensor, integral membrane domain VPBB_RS06185 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VPBB_RS06185 PF01409 tRNA synthetases class II core domain (F) VPBB_RS06190 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VPBB_RS06190 PF01588 Putative tRNA binding domain VPBB_RS06190 PF03147 Ferredoxin-fold anticodon binding domain VPBB_RS06190 PF03484 tRNA synthetase B5 domain VPBB_RS06190 PF03483 B3/4 domain VPBB_RS06200 PF00216 Bacterial DNA-binding protein VPBB_RS06210 PF05724 Thiopurine S-methyltransferase (TPMT) VPBB_RS06215 PF02222 ATP-grasp domain VPBB_RS06220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VPBB_RS06220 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VPBB_RS06225 PF04172 LrgB-like family VPBB_RS06230 PF03788 LrgA family VPBB_RS06235 PF00929 Exonuclease VPBB_RS06235 PF08411 Exonuclease C-terminal VPBB_RS06240 PF00375 Sodium:dicarboxylate symporter family VPBB_RS06245 PF13460 NAD(P)H-binding VPBB_RS06250 PF02277 Phosphoribosyltransferase VPBB_RS06255 PF02654 Cobalamin-5-phosphate synthase VPBB_RS06260 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VPBB_RS06275 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VPBB_RS06280 PF01032 FecCD transport family VPBB_RS06285 PF00005 ABC transporter VPBB_RS06305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS06305 PF03466 LysR substrate binding domain VPBB_RS06325 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VPBB_RS06330 PF16363 GDP-mannose 4,6 dehydratase VPBB_RS06335 PF04991 LicD family VPBB_RS06340 PF01863 Protein of unknown function DUF45 VPBB_RS06345 PF05971 RNA methyltransferase VPBB_RS06365 PF00392 Bacterial regulatory proteins, gntR family VPBB_RS06370 PF00171 Aldehyde dehydrogenase family VPBB_RS06375 PF05544 Proline racemase VPBB_RS06390 PF02423 Ornithine cyclodeaminase/mu-crystallin family VPBB_RS06395 PF00701 Dihydrodipicolinate synthetase family VPBB_RS06400 PF00005 ABC transporter VPBB_RS06400 PF08402 TOBE domain VPBB_RS06405 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS06410 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS06420 PF08453 Peptidase family M9 N-terminal VPBB_RS06420 PF01752 Collagenase VPBB_RS06430 PF00005 ABC transporter VPBB_RS06430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_RS06435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_RS06435 PF00005 ABC transporter VPBB_RS06440 PF12911 N-terminal TM domain of oligopeptide transport permease C VPBB_RS06440 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS06445 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS06450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_RS06455 PF01546 Peptidase family M20/M25/M40 VPBB_RS06455 PF07687 Peptidase dimerisation domain VPBB_RS06465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPBB_RS06470 PF04209 homogentisate 1,2-dioxygenase VPBB_RS06480 PF02798 Glutathione S-transferase, N-terminal domain VPBB_RS06480 PF14497 Glutathione S-transferase, C-terminal domain VPBB_RS06525 PF13533 Biotin-lipoyl like VPBB_RS06540 PF08543 Phosphomethylpyrimidine kinase VPBB_RS06545 PF03466 LysR substrate binding domain VPBB_RS06545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS06565 PF00300 Histidine phosphatase superfamily (branch 1) VPBB_RS06580 PF00939 Sodium:sulfate symporter transmembrane region VPBB_RS06585 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_RS06585 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS06585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS06590 PF02954 Bacterial regulatory protein, Fis family VPBB_RS06590 PF00158 Sigma-54 interaction domain VPBB_RS06590 PF00072 Response regulator receiver domain VPBB_RS06595 PF03707 Bacterial signalling protein N terminal repeat VPBB_RS06595 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS06595 PF00563 EAL domain VPBB_RS06600 PF01966 HD domain VPBB_RS06600 PF11871 Domain of unknown function (DUF3391) VPBB_RS06605 PF01810 LysE type translocator VPBB_RS06610 PF11230 Protein of unknown function (DUF3029) VPBB_RS06615 PF04055 Radical SAM superfamily VPBB_RS06625 PF03741 Integral membrane protein TerC family VPBB_RS06630 PF08525 Opacity-associated protein A N-terminal motif VPBB_RS06630 PF01551 Peptidase family M23 VPBB_RS06630 PF01476 LysM domain VPBB_RS06655 PF02954 Bacterial regulatory protein, Fis family VPBB_RS06655 PF00158 Sigma-54 interaction domain VPBB_RS06660 PF17871 AAA lid domain VPBB_RS06660 PF07724 AAA domain (Cdc48 subfamily) VPBB_RS06660 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_RS06660 PF10431 C-terminal, D2-small domain, of ClpB protein VPBB_RS06665 PF05638 Type VI secretion system effector, Hcp VPBB_RS06670 PF04717 Type VI secretion system, phage-baseplate injector VPBB_RS06695 PF00069 Protein kinase domain VPBB_RS06710 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath VPBB_RS06720 PF05947 Type VI secretion system, TssF VPBB_RS06730 PF01037 Lrp/AsnC ligand binding domain VPBB_RS06760 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE VPBB_RS06800 PF01966 HD domain VPBB_RS06805 PF00465 Iron-containing alcohol dehydrogenase VPBB_RS06810 PF03222 Tryptophan/tyrosine permease family VPBB_RS06830 PF00664 ABC transporter transmembrane region VPBB_RS06830 PF00005 ABC transporter VPBB_RS06835 PF00664 ABC transporter transmembrane region VPBB_RS06835 PF00005 ABC transporter VPBB_RS06860 PF00012 Hsp70 protein VPBB_RS06865 PF00012 Hsp70 protein VPBB_RS06875 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS06875 PF17158 Membrane-associated sensor, integral membrane domain VPBB_RS06905 PF00384 Molybdopterin oxidoreductase VPBB_RS06905 PF01568 Molydopterin dinucleotide binding domain VPBB_RS06905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPBB_RS06910 PF12800 4Fe-4S binding domain VPBB_RS06910 PF13247 4Fe-4S dicluster domain VPBB_RS06915 PF04976 DMSO reductase anchor subunit (DmsC) VPBB_RS06920 PF02613 Nitrate reductase delta subunit VPBB_RS06930 PF02525 Flavodoxin-like fold VPBB_RS06935 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VPBB_RS06935 PF00271 Helicase conserved C-terminal domain VPBB_RS06935 PF04408 Helicase associated domain (HA2) VPBB_RS06935 PF00270 DEAD/DEAH box helicase VPBB_RS06935 PF11898 Domain of unknown function (DUF3418) VPBB_RS06950 PF02028 BCCT, betaine/carnitine/choline family transporter VPBB_RS06960 PF02397 Bacterial sugar transferase VPBB_RS06965 PF00535 Glycosyl transferase family 2 VPBB_RS06970 PF00534 Glycosyl transferases group 1 VPBB_RS06970 PF13439 Glycosyltransferase Family 4 VPBB_RS07000 PF13439 Glycosyltransferase Family 4 VPBB_RS07000 PF00534 Glycosyl transferases group 1 VPBB_RS07010 PF00158 Sigma-54 interaction domain VPBB_RS07010 PF00072 Response regulator receiver domain VPBB_RS07010 PF02954 Bacterial regulatory protein, Fis family VPBB_RS07025 PF02563 Polysaccharide biosynthesis/export protein VPBB_RS07025 PF10531 SLBB domain VPBB_RS07035 PF01740 STAS domain VPBB_RS07040 PF01068 ATP dependent DNA ligase domain VPBB_RS07040 PF14743 DNA ligase OB-like domain VPBB_RS07050 PF01554 MatE VPBB_RS07055 PF00677 Lumazine binding domain VPBB_RS07065 PF03881 Fructosamine kinase VPBB_RS07070 PF00072 Response regulator receiver domain VPBB_RS07070 PF01339 CheB methylesterase VPBB_RS07075 PF05230 MASE2 domain VPBB_RS07075 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS07085 PF00877 NlpC/P60 family VPBB_RS07090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS07090 PF12729 Four helix bundle sensory module for signal transduction VPBB_RS07090 PF00672 HAMP domain VPBB_RS07125 PF03942 DTW domain VPBB_RS07130 PF00480 ROK family VPBB_RS07140 PF00994 Probable molybdopterin binding domain VPBB_RS07140 PF03454 MoeA C-terminal region (domain IV) VPBB_RS07140 PF03453 MoeA N-terminal region (domain I and II) VPBB_RS07145 PF12804 MobA-like NTP transferase domain VPBB_RS07150 PF00005 ABC transporter VPBB_RS07150 PF08402 TOBE domain VPBB_RS07155 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS07160 PF12849 PBP superfamily domain VPBB_RS07165 PF02954 Bacterial regulatory protein, Fis family VPBB_RS07165 PF00072 Response regulator receiver domain VPBB_RS07165 PF00158 Sigma-54 interaction domain VPBB_RS07170 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS07170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS07175 PF12848 ABC transporter VPBB_RS07175 PF00005 ABC transporter VPBB_RS07185 PF02634 FdhD/NarQ family VPBB_RS07205 PF02613 Nitrate reductase delta subunit VPBB_RS07215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPBB_RS07215 PF01568 Molydopterin dinucleotide binding domain VPBB_RS07215 PF00384 Molybdopterin oxidoreductase VPBB_RS07220 PF13247 4Fe-4S dicluster domain VPBB_RS07235 PF03527 RHS protein VPBB_RS07235 PF05593 RHS Repeat VPBB_RS07260 PF00909 Ammonium Transporter Family VPBB_RS07270 PF02146 Sir2 family VPBB_RS07275 PF13416 Bacterial extracellular solute-binding protein VPBB_RS07280 PF13416 Bacterial extracellular solute-binding protein VPBB_RS07285 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS07290 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS07295 PF08402 TOBE domain VPBB_RS07295 PF00005 ABC transporter VPBB_RS07315 PF01171 PP-loop family VPBB_RS07320 PF00582 Universal stress protein family VPBB_RS07325 PF00027 Cyclic nucleotide-binding domain VPBB_RS07325 PF13545 Crp-like helix-turn-helix domain VPBB_RS07340 PF00403 Heavy-metal-associated domain VPBB_RS07350 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VPBB_RS07350 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VPBB_RS07365 PF00115 Cytochrome C and Quinol oxidase polypeptide I VPBB_RS07380 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS07380 PF09308 LuxQ, periplasmic VPBB_RS07380 PF00072 Response regulator receiver domain VPBB_RS07380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS07395 PF05362 Lon protease (S16) C-terminal proteolytic domain VPBB_RS07395 PF13654 AAA domain VPBB_RS07400 PF07977 FabA-like domain VPBB_RS07405 PF04957 Ribosome modulation factor VPBB_RS07415 PF12848 ABC transporter VPBB_RS07415 PF16326 ABC transporter C-terminal domain VPBB_RS07415 PF00005 ABC transporter VPBB_RS07425 PF01170 Putative RNA methylase family UPF0020 VPBB_RS07425 PF02926 THUMP domain VPBB_RS07425 PF10672 S-adenosylmethionine-dependent methyltransferase VPBB_RS07430 PF07126 Cell-division protein ZapC VPBB_RS07435 PF01180 Dihydroorotate dehydrogenase VPBB_RS07440 PF05088 Bacterial NAD-glutamate dehydrogenase VPBB_RS07445 PF01433 Peptidase family M1 domain VPBB_RS07445 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VPBB_RS07445 PF11940 Domain of unknown function (DUF3458) Ig-like fold VPBB_RS07455 PF17804 Tail specific protease N-terminal domain VPBB_RS07455 PF03572 Peptidase family S41 VPBB_RS07455 PF00595 PDZ domain VPBB_RS07455 PF11818 C-terminal domain of tail specific protease (DUF3340) VPBB_RS07460 PF17516 ProQ C-terminal domain VPBB_RS07460 PF04352 ProQ/FINO family VPBB_RS07465 PF13185 GAF domain VPBB_RS07470 PF00005 ABC transporter VPBB_RS07470 PF00664 ABC transporter transmembrane region VPBB_RS07475 PF04403 Paraquat-inducible protein A VPBB_RS07480 PF02470 MlaD protein VPBB_RS07485 PF01189 16S rRNA methyltransferase RsmB/F VPBB_RS07485 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VPBB_RS07485 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VPBB_RS07505 PF00793 DAHP synthetase I family VPBB_RS07510 PF04461 Protein of unknown function (DUF520) VPBB_RS07515 PF14824 Sirohaem biosynthesis protein central VPBB_RS07515 PF10414 Sirohaem synthase dimerisation region VPBB_RS07515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VPBB_RS07520 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_RS07525 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS07530 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS07535 PF00005 ABC transporter VPBB_RS07540 PF01027 Inhibitor of apoptosis-promoting Bax1 VPBB_RS07550 PF04358 DsrC like protein VPBB_RS07555 PF00708 Acylphosphatase VPBB_RS07560 PF02743 Cache domain VPBB_RS07560 PF00672 HAMP domain VPBB_RS07560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS07565 PF10672 S-adenosylmethionine-dependent methyltransferase VPBB_RS07565 PF17785 PUA-like domain VPBB_RS07580 PF00691 OmpA family VPBB_RS07580 PF05736 OprF membrane domain VPBB_RS07595 PF05736 OprF membrane domain VPBB_RS07595 PF00691 OmpA family VPBB_RS07605 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS07605 PF17158 Membrane-associated sensor, integral membrane domain VPBB_RS07610 PF06508 Queuosine biosynthesis protein QueC VPBB_RS07615 PF04055 Radical SAM superfamily VPBB_RS07630 PF00089 Trypsin VPBB_RS07640 PF00501 AMP-binding enzyme VPBB_RS07640 PF13193 AMP-binding enzyme C-terminal domain VPBB_RS07640 PF16177 Acetyl-coenzyme A synthetase N-terminus VPBB_RS07645 PF04303 PrpF protein VPBB_RS07650 PF00330 Aconitase family (aconitate hydratase) VPBB_RS07650 PF00694 Aconitase C-terminal domain VPBB_RS07655 PF00285 Citrate synthase, C-terminal domain VPBB_RS07685 PF01970 Tripartite tricarboxylate transporter TctA family VPBB_RS07690 PF01925 Sulfite exporter TauE/SafE VPBB_RS07700 PF05844 YopD protein VPBB_RS07710 PF07720 Tetratricopeptide repeat VPBB_RS07715 PF04792 V antigen (LcrV) protein VPBB_RS07720 PF07216 LcrG protein VPBB_RS07725 PF09621 Type III secretion system regulator (LcrR) VPBB_RS07730 PF00771 FHIPEP family VPBB_RS07750 PF09059 TyeA VPBB_RS07755 PF07201 HrpJ-like domain VPBB_RS07760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPBB_RS07760 PF02874 ATP synthase alpha/beta family, beta-barrel domain VPBB_RS07760 PF18269 T3SS EscN ATPase C-terminal domain VPBB_RS07775 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VPBB_RS07780 PF00813 FliP family VPBB_RS07785 PF01313 Bacterial export proteins, family 3 VPBB_RS07790 PF01311 Bacterial export proteins, family 1 VPBB_RS07795 PF01312 FlhB HrpN YscU SpaS Family VPBB_RS07800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS07800 PF03466 LysR substrate binding domain VPBB_RS07805 PF12146 Serine aminopeptidase, S33 VPBB_RS07810 PF12146 Serine aminopeptidase, S33 VPBB_RS07840 PF02661 Fic/DOC family VPBB_RS07850 PF02108 Flagellar assembly protein FliH VPBB_RS07860 PF01514 Secretory protein of YscJ/FliF family VPBB_RS07865 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI VPBB_RS07875 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) VPBB_RS07880 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF VPBB_RS07890 PF16697 Inner membrane component of T3SS, cytoplasmic domain VPBB_RS07890 PF16693 Inner membrane component of T3SS, periplasmic domain VPBB_RS07895 PF03958 Bacterial type II/III secretion system short domain VPBB_RS07895 PF00263 Bacterial type II and III secretion system protein VPBB_RS07910 PF12833 Helix-turn-helix domain VPBB_RS07930 PF00171 Aldehyde dehydrogenase family VPBB_RS07935 PF00158 Sigma-54 interaction domain VPBB_RS07935 PF01590 GAF domain VPBB_RS07935 PF02954 Bacterial regulatory protein, Fis family VPBB_RS07955 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VPBB_RS07955 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VPBB_RS07960 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VPBB_RS07965 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VPBB_RS07965 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VPBB_RS07970 PF00072 Response regulator receiver domain VPBB_RS07970 PF12431 Transcriptional regulator VPBB_RS07975 PF00989 PAS fold VPBB_RS07975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS07975 PF17203 Single cache domain 3 VPBB_RS07975 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VPBB_RS07990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_RS08005 PF03150 Di-haem cytochrome c peroxidase VPBB_RS08005 PF00034 Cytochrome c VPBB_RS08010 PF00696 Amino acid kinase family VPBB_RS08010 PF13840 ACT domain VPBB_RS08015 PF06339 Ectoine synthase VPBB_RS08020 PF00202 Aminotransferase class-III VPBB_RS08025 PF00583 Acetyltransferase (GNAT) family VPBB_RS08030 PF02028 BCCT, betaine/carnitine/choline family transporter VPBB_RS08045 PF00005 ABC transporter VPBB_RS08045 PF00571 CBS domain VPBB_RS08050 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS08055 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VPBB_RS08065 PF00501 AMP-binding enzyme VPBB_RS08085 PF00486 Transcriptional regulatory protein, C terminal VPBB_RS08085 PF00072 Response regulator receiver domain VPBB_RS08090 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS08090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS08090 PF08521 Two-component sensor kinase N-terminal VPBB_RS08095 PF00884 Sulfatase VPBB_RS08120 PF01235 Sodium:alanine symporter family VPBB_RS08130 PF01810 LysE type translocator VPBB_RS08135 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VPBB_RS08140 PF03279 Bacterial lipid A biosynthesis acyltransferase VPBB_RS08150 PF13520 Amino acid permease VPBB_RS08160 PF04204 Homoserine O-succinyltransferase VPBB_RS08175 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS08175 PF00563 EAL domain VPBB_RS08175 PF03707 Bacterial signalling protein N terminal repeat VPBB_RS08180 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS08180 PF00672 HAMP domain VPBB_RS08180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS08180 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VPBB_RS08180 PF01627 Hpt domain VPBB_RS08180 PF00072 Response regulator receiver domain VPBB_RS08195 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_RS08195 PF12464 Maltose acetyltransferase VPBB_RS08205 PF01928 CYTH domain VPBB_RS08215 PF04237 YjbR VPBB_RS08220 PF01047 MarR family VPBB_RS08230 PF12833 Helix-turn-helix domain VPBB_RS08235 PF02272 DHHA1 domain VPBB_RS08235 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VPBB_RS08235 PF01411 tRNA synthetases class II (A) VPBB_RS08250 PF00563 EAL domain VPBB_RS08250 PF00196 Bacterial regulatory proteins, luxR family VPBB_RS08255 PF02833 DHHA2 domain VPBB_RS08255 PF01368 DHH family VPBB_RS08260 PF00202 Aminotransferase class-III VPBB_RS08265 PF00171 Aldehyde dehydrogenase family VPBB_RS08270 PF04371 Porphyromonas-type peptidyl-arginine deiminase VPBB_RS08275 PF00795 Carbon-nitrogen hydrolase VPBB_RS08280 PF01266 FAD dependent oxidoreductase VPBB_RS08285 PF00171 Aldehyde dehydrogenase family VPBB_RS08290 PF07883 Cupin domain VPBB_RS08290 PF01381 Helix-turn-helix VPBB_RS08295 PF07722 Peptidase C26 VPBB_RS08300 PF00120 Glutamine synthetase, catalytic domain VPBB_RS08305 PF03553 Na+/H+ antiporter family VPBB_RS08330 PF01810 LysE type translocator VPBB_RS08355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPBB_RS08555 PF05154 TM2 domain VPBB_RS08570 PF13276 HTH-like domain VPBB_RS08570 PF00665 Integrase core domain VPBB_RS08570 PF13333 Integrase core domain VPBB_RS08650 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VPBB_RS08675 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VPBB_RS08730 PF13495 Phage integrase, N-terminal SAM-like domain VPBB_RS08730 PF00589 Phage integrase family VPBB_RS08745 PF13302 Acetyltransferase (GNAT) domain VPBB_RS08750 PF18024 Helix-turn-helix domain VPBB_RS08750 PF00158 Sigma-54 interaction domain VPBB_RS08755 PF05128 Domain of unknown function (DUF697) VPBB_RS08760 PF04317 YcjX-like family, DUF463 VPBB_RS08775 PF00425 chorismate binding enzyme VPBB_RS08775 PF04715 Anthranilate synthase component I, N terminal region VPBB_RS08780 PF00072 Response regulator receiver domain VPBB_RS08780 PF09308 LuxQ, periplasmic VPBB_RS08780 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS08780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS08790 PF00293 NUDIX domain VPBB_RS08795 PF03222 Tryptophan/tyrosine permease family VPBB_RS08800 PF03315 Serine dehydratase beta chain VPBB_RS08800 PF03313 Serine dehydratase alpha chain VPBB_RS08805 PF00563 EAL domain VPBB_RS08805 PF04940 Sensors of blue-light using FAD VPBB_RS08815 PF01242 6-pyruvoyl tetrahydropterin synthase VPBB_RS08820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS08820 PF02743 Cache domain VPBB_RS08820 PF00672 HAMP domain VPBB_RS08825 PF00152 tRNA synthetases class II (D, K and N) VPBB_RS08825 PF01336 OB-fold nucleic acid binding domain VPBB_RS08835 PF00392 Bacterial regulatory proteins, gntR family VPBB_RS08835 PF00155 Aminotransferase class I and II VPBB_RS08850 PF00155 Aminotransferase class I and II VPBB_RS08870 PF00672 HAMP domain VPBB_RS08870 PF02743 Cache domain VPBB_RS08870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS08875 PF02028 BCCT, betaine/carnitine/choline family transporter VPBB_RS08880 PF01047 MarR family VPBB_RS08885 PF00072 Response regulator receiver domain VPBB_RS08885 PF00196 Bacterial regulatory proteins, luxR family VPBB_RS08890 PF07730 Histidine kinase VPBB_RS08890 PF17200 Single Cache domain 2 VPBB_RS08895 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VPBB_RS08905 PF03480 Bacterial extracellular solute-binding protein, family 7 VPBB_RS08920 PF00753 Metallo-beta-lactamase superfamily VPBB_RS08925 PF05951 Bacterial protein of unknown function (DUF882) VPBB_RS08930 PF01471 Putative peptidoglycan binding domain VPBB_RS08930 PF03734 L,D-transpeptidase catalytic domain VPBB_RS08955 PF00925 GTP cyclohydrolase II VPBB_RS08965 PF03918 Cytochrome C biogenesis protein VPBB_RS08970 PF08534 Redoxin VPBB_RS08975 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VPBB_RS08975 PF01578 Cytochrome C assembly protein VPBB_RS08980 PF03916 Polysulphide reductase, NrfD VPBB_RS08985 PF13247 4Fe-4S dicluster domain VPBB_RS08995 PF02335 Cytochrome c552 VPBB_RS09010 PF00521 DNA gyrase/topoisomerase IV, subunit A VPBB_RS09010 PF03989 DNA gyrase C-terminal domain, beta-propeller VPBB_RS09020 PF02867 Ribonucleotide reductase, barrel domain VPBB_RS09020 PF00317 Ribonucleotide reductase, all-alpha domain VPBB_RS09020 PF03477 ATP cone domain VPBB_RS09025 PF00268 Ribonucleotide reductase, small chain VPBB_RS09035 PF00994 Probable molybdopterin binding domain VPBB_RS09050 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VPBB_RS09055 PF03435 Saccharopine dehydrogenase NADP binding domain VPBB_RS09055 PF16653 Saccharopine dehydrogenase C-terminal domain VPBB_RS09060 PF00202 Aminotransferase class-III VPBB_RS09085 PF01066 CDP-alcohol phosphatidyltransferase VPBB_RS09090 PF01541 GIY-YIG catalytic domain VPBB_RS09090 PF08459 UvrC Helix-hairpin-helix N-terminal VPBB_RS09090 PF02151 UvrB/uvrC motif VPBB_RS09095 PF00072 Response regulator receiver domain VPBB_RS09095 PF00196 Bacterial regulatory proteins, luxR family VPBB_RS09100 PF00136 DNA polymerase family B VPBB_RS09100 PF03104 DNA polymerase family B, exonuclease domain VPBB_RS09110 PF08207 Elongation factor P (EF-P) KOW-like domain VPBB_RS09110 PF09285 Elongation factor P, C-terminal VPBB_RS09110 PF01132 Elongation factor P (EF-P) OB domain VPBB_RS09115 PF04269 Protein of unknown function, DUF440 VPBB_RS09120 PF00849 RNA pseudouridylate synthase VPBB_RS09120 PF01479 S4 domain VPBB_RS09130 PF01300 Telomere recombination VPBB_RS09135 PF02811 PHP domain VPBB_RS09140 PF08056 Tryptophan operon leader peptide VPBB_RS09145 PF04715 Anthranilate synthase component I, N terminal region VPBB_RS09145 PF00425 chorismate binding enzyme VPBB_RS09150 PF00117 Glutamine amidotransferase class-I VPBB_RS09155 PF00591 Glycosyl transferase family, a/b domain VPBB_RS09155 PF02885 Glycosyl transferase family, helical bundle domain VPBB_RS09160 PF00218 Indole-3-glycerol phosphate synthase VPBB_RS09160 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VPBB_RS09165 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_RS09170 PF00290 Tryptophan synthase alpha chain VPBB_RS09175 PF13545 Crp-like helix-turn-helix domain VPBB_RS09175 PF00027 Cyclic nucleotide-binding domain VPBB_RS09180 PF00501 AMP-binding enzyme VPBB_RS09180 PF13193 AMP-binding enzyme C-terminal domain VPBB_RS09185 PF00375 Sodium:dicarboxylate symporter family VPBB_RS09190 PF17327 Acyl homoserine lactone synthase VPBB_RS09195 PF00072 Response regulator receiver domain VPBB_RS09195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS09205 PF04279 Intracellular septation protein A VPBB_RS09210 PF03061 Thioesterase superfamily VPBB_RS09215 PF03795 YCII-related domain VPBB_RS09225 PF08267 Cobalamin-independent synthase, N-terminal domain VPBB_RS09225 PF01717 Cobalamin-independent synthase, Catalytic domain VPBB_RS09230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS09230 PF03466 LysR substrate binding domain VPBB_RS09245 PF01590 GAF domain VPBB_RS09245 PF00360 Phytochrome region VPBB_RS09245 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS09245 PF00563 EAL domain VPBB_RS09250 PF08497 Radical SAM N-terminal VPBB_RS09250 PF11842 Domain of unknown function (DUF3362) VPBB_RS09250 PF04055 Radical SAM superfamily VPBB_RS09255 PF00672 HAMP domain VPBB_RS09255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS09260 PF00486 Transcriptional regulatory protein, C terminal VPBB_RS09260 PF00072 Response regulator receiver domain VPBB_RS09265 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS09265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS09265 PF00672 HAMP domain VPBB_RS09285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS09285 PF03466 LysR substrate binding domain VPBB_RS09290 PF00529 HlyD membrane-fusion protein of T1SS VPBB_RS09290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_RS09300 PF01717 Cobalamin-independent synthase, Catalytic domain VPBB_RS09300 PF08267 Cobalamin-independent synthase, N-terminal domain VPBB_RS09310 PF02311 AraC-like ligand binding domain VPBB_RS09310 PF12833 Helix-turn-helix domain VPBB_RS09315 PF00857 Isochorismatase family VPBB_RS09320 PF00005 ABC transporter VPBB_RS09320 PF02687 FtsX-like permease family VPBB_RS09320 PF12704 MacB-like periplasmic core domain VPBB_RS09325 PF00005 ABC transporter VPBB_RS09325 PF12704 MacB-like periplasmic core domain VPBB_RS09325 PF02687 FtsX-like permease family VPBB_RS09330 PF12704 MacB-like periplasmic core domain VPBB_RS09330 PF02687 FtsX-like permease family VPBB_RS09330 PF00005 ABC transporter VPBB_RS09340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VPBB_RS09355 PF01938 TRAM domain VPBB_RS09355 PF05958 tRNA (Uracil-5-)-methyltransferase VPBB_RS09370 PF00085 Thioredoxin VPBB_RS09375 PF11412 Disulphide bond corrector protein DsbC VPBB_RS09375 PF02683 Cytochrome C biogenesis protein transmembrane region VPBB_RS09385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS09385 PF03466 LysR substrate binding domain VPBB_RS09390 PF00196 Bacterial regulatory proteins, luxR family VPBB_RS09390 PF00072 Response regulator receiver domain VPBB_RS09395 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS09395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS09400 PF13247 4Fe-4S dicluster domain VPBB_RS09405 PF03916 Polysulphide reductase, NrfD VPBB_RS09410 PF00384 Molybdopterin oxidoreductase VPBB_RS09410 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPBB_RS09410 PF01568 Molydopterin dinucleotide binding domain VPBB_RS09415 PF00034 Cytochrome c VPBB_RS09420 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VPBB_RS09425 PF04403 Paraquat-inducible protein A VPBB_RS09430 PF02470 MlaD protein VPBB_RS09440 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VPBB_RS09450 PF00535 Glycosyl transferase family 2 VPBB_RS09455 PF01370 NAD dependent epimerase/dehydratase family VPBB_RS09465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_RS09470 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VPBB_RS09475 PF18073 Rubredoxin metal binding domain VPBB_RS09480 PF06305 Lipopolysaccharide assembly protein A domain VPBB_RS09485 PF00216 Bacterial DNA-binding protein VPBB_RS09490 PF00575 S1 RNA binding domain VPBB_RS09495 PF02224 Cytidylate kinase VPBB_RS09500 PF01343 Peptidase family S49 VPBB_RS09500 PF08496 Peptidase family S49 N-terminal VPBB_RS09505 PF00106 short chain dehydrogenase VPBB_RS09520 PF07733 Bacterial DNA polymerase III alpha NTPase domain VPBB_RS09520 PF14579 Helix-hairpin-helix motif VPBB_RS09520 PF02811 PHP domain VPBB_RS09520 PF01336 OB-fold nucleic acid binding domain VPBB_RS09520 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VPBB_RS09525 PF00072 Response regulator receiver domain VPBB_RS09525 PF01584 CheW-like domain VPBB_RS09530 PF00480 ROK family VPBB_RS09535 PF02887 Pyruvate kinase, alpha/beta domain VPBB_RS09535 PF00224 Pyruvate kinase, barrel domain VPBB_RS09540 PF01734 Patatin-like phospholipase VPBB_RS09555 PF00209 Sodium:neurotransmitter symporter family VPBB_RS09565 PF02378 Phosphotransferase system, EIIC VPBB_RS09565 PF00367 phosphotransferase system, EIIB VPBB_RS09570 PF01026 TatD related DNase VPBB_RS09575 PF09115 DNA polymerase III, delta subunit, C terminal VPBB_RS09580 PF02223 Thymidylate kinase VPBB_RS09585 PF02618 YceG-like family VPBB_RS09590 PF01063 Amino-transferase class IV VPBB_RS09595 PF02801 Beta-ketoacyl synthase, C-terminal domain VPBB_RS09595 PF00109 Beta-ketoacyl synthase, N-terminal domain VPBB_RS09600 PF00550 Phosphopantetheine attachment site VPBB_RS09610 PF00698 Acyl transferase domain VPBB_RS09615 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VPBB_RS09615 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VPBB_RS09620 PF02504 Fatty acid synthesis protein VPBB_RS09625 PF01783 Ribosomal L32p protein family VPBB_RS09630 PF02620 Large ribosomal RNA subunit accumulation protein YceD VPBB_RS09635 PF02545 Maf-like protein VPBB_RS09640 PF00849 RNA pseudouridylate synthase VPBB_RS09640 PF01479 S4 domain VPBB_RS09645 PF10150 Ribonuclease E/G family VPBB_RS09645 PF12111 Polyribonucleotide phosphorylase C terminal VPBB_RS09645 PF00575 S1 RNA binding domain VPBB_RS09650 PF01740 STAS domain VPBB_RS09650 PF00916 Sulfate permease family VPBB_RS09655 PF01451 Low molecular weight phosphotyrosine protein phosphatase VPBB_RS09660 PF12557 Cob(I)alamin adenosyltransferase N terminal VPBB_RS09660 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VPBB_RS09670 PF00485 Phosphoribulokinase / Uridine kinase family VPBB_RS09675 PF10609 NUBPL iron-transfer P-loop NTPase VPBB_RS09680 PF09334 tRNA synthetases class I (M) VPBB_RS09680 PF01588 Putative tRNA binding domain VPBB_RS09690 PF00392 Bacterial regulatory proteins, gntR family VPBB_RS09690 PF07840 FadR C-terminal domain VPBB_RS09695 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VPBB_RS09700 PF02600 Disulfide bond formation protein DsbB VPBB_RS09705 PF07516 SecA Wing and Scaffold domain VPBB_RS09705 PF01043 SecA preprotein cross-linking domain VPBB_RS09705 PF07517 SecA DEAD-like domain VPBB_RS09705 PF02810 SEC-C motif VPBB_RS09710 PF01207 Dihydrouridine synthase (Dus) VPBB_RS09715 PF00072 Response regulator receiver domain VPBB_RS09715 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS09720 PF00128 Alpha amylase, catalytic domain VPBB_RS09720 PF02903 Alpha amylase, N-terminal ig-like domain VPBB_RS09725 PF00005 ABC transporter VPBB_RS09730 PF02653 Branched-chain amino acid transport system / permease component VPBB_RS09740 PF04217 Protein of unknown function, DUF412 VPBB_RS09745 PF00871 Acetokinase family VPBB_RS09750 PF01515 Phosphate acetyl/butaryl transferase VPBB_RS09750 PF07085 DRTGG domain VPBB_RS09755 PF13194 Domain of unknown function (DUF4010) VPBB_RS09765 PF13409 Glutathione S-transferase, N-terminal domain VPBB_RS09770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_RS09770 PF00005 ABC transporter VPBB_RS09775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_RS09775 PF00005 ABC transporter VPBB_RS09780 PF12911 N-terminal TM domain of oligopeptide transport permease C VPBB_RS09780 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS09785 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS09790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_RS09795 PF02391 MoaE protein VPBB_RS09800 PF02597 ThiS family VPBB_RS09805 PF01967 MoaC family VPBB_RS09810 PF00994 Probable molybdopterin binding domain VPBB_RS09815 PF06463 Molybdenum Cofactor Synthesis C VPBB_RS09815 PF04055 Radical SAM superfamily VPBB_RS09820 PF01933 Uncharacterised protein family UPF0052 VPBB_RS09825 PF01627 Hpt domain VPBB_RS09830 PF00158 Sigma-54 interaction domain VPBB_RS09830 PF00072 Response regulator receiver domain VPBB_RS09830 PF02954 Bacterial regulatory protein, Fis family VPBB_RS09835 PF00271 Helicase conserved C-terminal domain VPBB_RS09835 PF17757 UvrB interaction domain VPBB_RS09835 PF12344 Ultra-violet resistance protein B VPBB_RS09835 PF02151 UvrB/uvrC motif VPBB_RS09835 PF04851 Type III restriction enzyme, res subunit VPBB_RS09845 PF02508 Rnf-Nqr subunit, membrane protein VPBB_RS09850 PF04060 Putative Fe-S cluster VPBB_RS09855 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VPBB_RS09855 PF10531 SLBB domain VPBB_RS09855 PF12838 4Fe-4S dicluster domain VPBB_RS09855 PF13375 RnfC Barrel sandwich hybrid domain VPBB_RS09860 PF03116 NQR2, RnfD, RnfE family VPBB_RS09865 PF04205 FMN-binding domain VPBB_RS09870 PF02508 Rnf-Nqr subunit, membrane protein VPBB_RS09875 PF00633 Helix-hairpin-helix motif VPBB_RS09875 PF10576 Iron-sulfur binding domain of endonuclease III VPBB_RS09875 PF00730 HhH-GPD superfamily base excision DNA repair protein VPBB_RS09880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPBB_RS09885 PF10952 Protein of unknown function (DUF2753) VPBB_RS09890 PF00691 OmpA family VPBB_RS09890 PF18393 MotY N-terminal domain VPBB_RS09895 PF00929 Exonuclease VPBB_RS09900 PF03553 Na+/H+ antiporter family VPBB_RS09900 PF13726 Na+-H+ antiporter family VPBB_RS09910 PF00462 Glutaredoxin VPBB_RS09915 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VPBB_RS09915 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VPBB_RS09930 PF00171 Aldehyde dehydrogenase family VPBB_RS09930 PF00465 Iron-containing alcohol dehydrogenase VPBB_RS09935 PF01914 MarC family integral membrane protein VPBB_RS09940 PF00520 Ion transport protein VPBB_RS09940 PF00027 Cyclic nucleotide-binding domain VPBB_RS09945 PF01118 Semialdehyde dehydrogenase, NAD binding domain VPBB_RS09945 PF02774 Semialdehyde dehydrogenase, dimerisation domain VPBB_RS09950 PF03553 Na+/H+ antiporter family VPBB_RS09965 PF04245 37-kD nucleoid-associated bacterial protein VPBB_RS09970 PF07208 Protein of unknown function (DUF1414) VPBB_RS09975 PF00884 Sulfatase VPBB_RS09975 PF11893 Domain of unknown function (DUF3413) VPBB_RS09985 PF00850 Histone deacetylase domain VPBB_RS09990 PF00106 short chain dehydrogenase VPBB_RS10000 PF01751 Toprim domain VPBB_RS10000 PF01131 DNA topoisomerase VPBB_RS10005 PF00881 Nitroreductase family VPBB_RS10010 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_RS10010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VPBB_RS10015 PF01343 Peptidase family S49 VPBB_RS10020 PF00710 Asparaginase, N-terminal VPBB_RS10020 PF17763 Glutaminase/Asparaginase C-terminal domain VPBB_RS10025 PF07023 Protein of unknown function (DUF1315) VPBB_RS10035 PF01641 SelR domain VPBB_RS10040 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPBB_RS10040 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VPBB_RS10045 PF01263 Aldose 1-epimerase VPBB_RS10050 PF02743 Cache domain VPBB_RS10050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS10050 PF00672 HAMP domain VPBB_RS10055 PF13847 Methyltransferase domain VPBB_RS10070 PF00245 Alkaline phosphatase VPBB_RS10080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VPBB_RS10085 PF03992 Antibiotic biosynthesis monooxygenase VPBB_RS10090 PF00924 Mechanosensitive ion channel VPBB_RS10090 PF05552 Conserved TM helix VPBB_RS10095 PF03692 Putative zinc- or iron-chelating domain VPBB_RS10100 PF04226 Transglycosylase associated protein VPBB_RS10105 PF03692 Putative zinc- or iron-chelating domain VPBB_RS10115 PF03313 Serine dehydratase alpha chain VPBB_RS10120 PF01042 Endoribonuclease L-PSP VPBB_RS10130 PF00230 Major intrinsic protein VPBB_RS10135 PF13662 Toprim domain VPBB_RS10135 PF02132 RecR protein VPBB_RS10140 PF02575 YbaB/EbfC DNA-binding family VPBB_RS10145 PF12169 DNA polymerase III subunits gamma and tau domain III VPBB_RS10145 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VPBB_RS10145 PF12170 DNA polymerase III tau subunit V interacting with alpha VPBB_RS10150 PF00156 Phosphoribosyl transferase domain VPBB_RS10155 PF04304 Protein of unknown function (DUF454) VPBB_RS10165 PF00072 Response regulator receiver domain VPBB_RS10170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS10170 PF03466 LysR substrate binding domain VPBB_RS10175 PF00156 Phosphoribosyl transferase domain VPBB_RS10180 PF02674 Colicin V production protein VPBB_RS10185 PF05036 Sporulation related domain VPBB_RS10190 PF02875 Mur ligase family, glutamate ligase domain VPBB_RS10190 PF08245 Mur ligase middle domain VPBB_RS10195 PF17848 Acetyl-coA carboxylase zinc finger domain VPBB_RS10195 PF01039 Carboxyl transferase domain VPBB_RS10200 PF01416 tRNA pseudouridine synthase VPBB_RS10210 PF01118 Semialdehyde dehydrogenase, NAD binding domain VPBB_RS10210 PF02774 Semialdehyde dehydrogenase, dimerisation domain VPBB_RS10215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPBB_RS10215 PF11890 Domain of unknown function (DUF3410) VPBB_RS10215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VPBB_RS10220 PF02801 Beta-ketoacyl synthase, C-terminal domain VPBB_RS10220 PF00109 Beta-ketoacyl synthase, N-terminal domain VPBB_RS10225 PF01266 FAD dependent oxidoreductase VPBB_RS10225 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VPBB_RS10230 PF03358 NADPH-dependent FMN reductase VPBB_RS10235 PF08891 YfcL protein VPBB_RS10240 PF04315 Elongation factor P hydroxylase VPBB_RS10245 PF03458 UPF0126 domain VPBB_RS10250 PF01264 Chorismate synthase VPBB_RS10255 PF05175 Methyltransferase small domain VPBB_RS10260 PF01713 Smr domain VPBB_RS10265 PF00300 Histidine phosphatase superfamily (branch 1) VPBB_RS10270 PF16187 Middle or third domain of peptidase_M16 VPBB_RS10270 PF05193 Peptidase M16 inactive domain VPBB_RS10270 PF00675 Insulinase (Peptidase family M16) VPBB_RS10280 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VPBB_RS10280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VPBB_RS10280 PF00378 Enoyl-CoA hydratase/isomerase VPBB_RS10285 PF02803 Thiolase, C-terminal domain VPBB_RS10285 PF00108 Thiolase, N-terminal domain VPBB_RS10290 PF08281 Sigma-70, region 4 VPBB_RS10290 PF04542 Sigma-70 region 2 VPBB_RS10300 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VPBB_RS10305 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VPBB_RS10310 PF04333 MlaA lipoprotein VPBB_RS10320 PF03918 Cytochrome C biogenesis protein VPBB_RS10325 PF08534 Redoxin VPBB_RS10330 PF01578 Cytochrome C assembly protein VPBB_RS10330 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VPBB_RS10335 PF03100 CcmE VPBB_RS10340 PF04995 Heme exporter protein D (CcmD) VPBB_RS10345 PF01578 Cytochrome C assembly protein VPBB_RS10350 PF03379 CcmB protein VPBB_RS10355 PF00005 ABC transporter VPBB_RS10365 PF01584 CheW-like domain VPBB_RS10375 PF13614 AAA domain VPBB_RS10380 PF01339 CheB methylesterase VPBB_RS10380 PF00072 Response regulator receiver domain VPBB_RS10385 PF01627 Hpt domain VPBB_RS10385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS10385 PF02895 Signal transducing histidine kinase, homodimeric domain VPBB_RS10385 PF01584 CheW-like domain VPBB_RS10385 PF00072 Response regulator receiver domain VPBB_RS10390 PF04344 Chemotaxis phosphatase, CheZ VPBB_RS10395 PF00072 Response regulator receiver domain VPBB_RS10400 PF04545 Sigma-70, region 4 VPBB_RS10400 PF04542 Sigma-70 region 2 VPBB_RS10400 PF04539 Sigma-70 region 3 VPBB_RS10405 PF10609 NUBPL iron-transfer P-loop NTPase VPBB_RS10410 PF00448 SRP54-type protein, GTPase domain VPBB_RS10415 PF00771 FHIPEP family VPBB_RS10420 PF01312 FlhB HrpN YscU SpaS Family VPBB_RS10425 PF01311 Bacterial export proteins, family 1 VPBB_RS10430 PF01313 Bacterial export proteins, family 3 VPBB_RS10435 PF00813 FliP family VPBB_RS10440 PF04347 Flagellar biosynthesis protein, FliO VPBB_RS10445 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VPBB_RS10450 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VPBB_RS10450 PF02154 Flagellar motor switch protein FliM VPBB_RS10470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPBB_RS10470 PF18269 T3SS EscN ATPase C-terminal domain VPBB_RS10480 PF14842 FliG N-terminal domain VPBB_RS10480 PF01706 FliG C-terminal domain VPBB_RS10480 PF14841 FliG middle domain VPBB_RS10485 PF01514 Secretory protein of YscJ/FliF family VPBB_RS10485 PF08345 Flagellar M-ring protein C-terminal VPBB_RS10490 PF02049 Flagellar hook-basal body complex protein FliE VPBB_RS10495 PF00072 Response regulator receiver domain VPBB_RS10495 PF00158 Sigma-54 interaction domain VPBB_RS10495 PF02954 Bacterial regulatory protein, Fis family VPBB_RS10500 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS10500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS10500 PF13188 PAS domain VPBB_RS10505 PF00158 Sigma-54 interaction domain VPBB_RS10505 PF02954 Bacterial regulatory protein, Fis family VPBB_RS10505 PF06490 Flagellar regulatory protein FleQ VPBB_RS10510 PF02561 Flagellar protein FliS VPBB_RS10520 PF02465 Flagellar hook-associated protein 2 N-terminus VPBB_RS10520 PF07196 Flagellin hook IN motif VPBB_RS10520 PF07195 Flagellar hook-associated protein 2 C-terminus VPBB_RS10525 PF03646 FlaG protein VPBB_RS10530 PF00669 Bacterial flagellin N-terminal helical region VPBB_RS10530 PF00700 Bacterial flagellin C-terminal helical region VPBB_RS10530 PF07196 Flagellin hook IN motif VPBB_RS10535 PF00700 Bacterial flagellin C-terminal helical region VPBB_RS10535 PF07196 Flagellin hook IN motif VPBB_RS10535 PF00669 Bacterial flagellin N-terminal helical region VPBB_RS10540 PF00669 Bacterial flagellin N-terminal helical region VPBB_RS10540 PF07196 Flagellin hook IN motif VPBB_RS10540 PF00700 Bacterial flagellin C-terminal helical region VPBB_RS10545 PF04261 Dyp-type peroxidase family VPBB_RS10550 PF11143 Protein of unknown function (DUF2919) VPBB_RS10570 PF03960 ArsC family VPBB_RS10575 PF07687 Peptidase dimerisation domain VPBB_RS10575 PF01546 Peptidase family M20/M25/M40 VPBB_RS10590 PF06804 NlpB/DapX lipoprotein VPBB_RS10595 PF00701 Dihydrodipicolinate synthetase family VPBB_RS10600 PF01842 ACT domain VPBB_RS10605 PF00578 AhpC/TSA family VPBB_RS10610 PF01594 AI-2E family transporter VPBB_RS10620 PF13181 Tetratricopeptide repeat VPBB_RS10620 PF01435 Peptidase family M48 VPBB_RS10625 PF03960 ArsC family VPBB_RS10630 PF03358 NADPH-dependent FMN reductase VPBB_RS10645 PF00860 Permease family VPBB_RS10655 PF02769 AIR synthase related protein, C-terminal domain VPBB_RS10655 PF00586 AIR synthase related protein, N-terminal domain VPBB_RS10660 PF00551 Formyl transferase VPBB_RS10665 PF13230 Glutamine amidotransferases class-II VPBB_RS10670 PF13580 SIS domain VPBB_RS10675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VPBB_RS10675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VPBB_RS10675 PF09317 Domain of unknown function (DUF1974) VPBB_RS10675 PF02770 Acyl-CoA dehydrogenase, middle domain VPBB_RS10680 PF01740 STAS domain VPBB_RS10680 PF00916 Sulfate permease family VPBB_RS10690 PF00929 Exonuclease VPBB_RS10695 PF00075 RNase H VPBB_RS10700 PF08241 Methyltransferase domain VPBB_RS10705 PF00753 Metallo-beta-lactamase superfamily VPBB_RS10705 PF16123 Hydroxyacylglutathione hydrolase C-terminus VPBB_RS10710 PF01464 Transglycosylase SLT domain VPBB_RS10710 PF01476 LysM domain VPBB_RS10720 PF03372 Endonuclease/Exonuclease/phosphatase family VPBB_RS10725 PF00543 Nitrogen regulatory protein P-II VPBB_RS10730 PF00034 Cytochrome c VPBB_RS10735 PF01171 PP-loop family VPBB_RS10735 PF11734 TilS substrate C-terminal domain VPBB_RS10735 PF09179 TilS substrate binding domain VPBB_RS10740 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VPBB_RS10745 PF14579 Helix-hairpin-helix motif VPBB_RS10745 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VPBB_RS10745 PF01336 OB-fold nucleic acid binding domain VPBB_RS10745 PF07733 Bacterial DNA polymerase III alpha NTPase domain VPBB_RS10745 PF02811 PHP domain VPBB_RS10750 PF01351 Ribonuclease HII VPBB_RS10755 PF02684 Lipid-A-disaccharide synthetase VPBB_RS10760 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VPBB_RS10760 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_RS10765 PF07977 FabA-like domain VPBB_RS10770 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VPBB_RS10770 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_RS10775 PF03938 Outer membrane protein (OmpH-like) VPBB_RS10780 PF01103 Surface antigen VPBB_RS10780 PF07244 Surface antigen variable number repeat VPBB_RS10785 PF02163 Peptidase family M50 VPBB_RS10785 PF17820 PDZ domain VPBB_RS10790 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VPBB_RS10790 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VPBB_RS10790 PF13288 DXP reductoisomerase C-terminal domain VPBB_RS10800 PF01255 Putative undecaprenyl diphosphate synthase VPBB_RS10805 PF01765 Ribosome recycling factor VPBB_RS10810 PF00696 Amino acid kinase family VPBB_RS10815 PF00889 Elongation factor TS VPBB_RS10820 PF00318 Ribosomal protein S2 VPBB_RS10825 PF00557 Metallopeptidase family M24 VPBB_RS10830 PF01842 ACT domain VPBB_RS10830 PF08335 GlnD PII-uridylyltransferase VPBB_RS10830 PF01966 HD domain VPBB_RS10830 PF01909 Nucleotidyltransferase domain VPBB_RS10835 PF11944 Protein of unknown function (DUF3461) VPBB_RS10840 PF00849 RNA pseudouridylate synthase VPBB_RS10845 PF04287 tRNA pseudouridine synthase C VPBB_RS10865 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VPBB_RS10870 PF03806 AbgT putative transporter family VPBB_RS10875 PF01197 Ribosomal protein L31 VPBB_RS10880 PF01980 tRNA-methyltransferase O VPBB_RS10880 PF18389 TrmO C-terminal domain VPBB_RS10885 PF03129 Anticodon binding domain VPBB_RS10885 PF04073 Aminoacyl-tRNA editing domain VPBB_RS10885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VPBB_RS10895 PF06786 Uncharacterised protein family (UPF0253) VPBB_RS10905 PF00209 Sodium:neurotransmitter symporter family VPBB_RS10920 PF03449 Transcription elongation factor, N-terminal VPBB_RS10920 PF01272 Transcription elongation factor, GreA/GreB, C-term VPBB_RS10925 PF00570 HRDC domain VPBB_RS10925 PF09382 RQC domain VPBB_RS10925 PF16124 RecQ zinc-binding VPBB_RS10925 PF00270 DEAD/DEAH box helicase VPBB_RS10925 PF00271 Helicase conserved C-terminal domain VPBB_RS10930 PF11798 IMS family HHH motif VPBB_RS10930 PF11799 impB/mucB/samB family C-terminal domain VPBB_RS10930 PF00817 impB/mucB/samB family VPBB_RS10935 PF11798 IMS family HHH motif VPBB_RS10935 PF00817 impB/mucB/samB family VPBB_RS10935 PF11799 impB/mucB/samB family C-terminal domain VPBB_RS10955 PF12161 HsdM N-terminal domain VPBB_RS10955 PF02384 N-6 DNA Methylase VPBB_RS10975 PF18766 SWI2/SNF2 ATPase VPBB_RS10975 PF11867 Domain of unknown function (DUF3387) VPBB_RS10975 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VPBB_RS11030 PF02424 ApbE family VPBB_RS11035 PF00175 Oxidoreductase NAD-binding domain VPBB_RS11035 PF00111 2Fe-2S iron-sulfur cluster binding domain VPBB_RS11035 PF00970 Oxidoreductase FAD-binding domain VPBB_RS11040 PF02508 Rnf-Nqr subunit, membrane protein VPBB_RS11045 PF02508 Rnf-Nqr subunit, membrane protein VPBB_RS11050 PF04205 FMN-binding domain VPBB_RS11055 PF03116 NQR2, RnfD, RnfE family VPBB_RS11060 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VPBB_RS11060 PF11973 NQRA C-terminal domain VPBB_RS11070 PF01722 BolA-like protein VPBB_RS11075 PF05175 Methyltransferase small domain VPBB_RS11080 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VPBB_RS11080 PF03923 Uncharacterized lipoprotein VPBB_RS11085 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VPBB_RS11090 PF07690 Major Facilitator Superfamily VPBB_RS11100 PF04542 Sigma-70 region 2 VPBB_RS11100 PF04545 Sigma-70, region 4 VPBB_RS11115 PF03502 Nucleoside-specific channel-forming protein, Tsx VPBB_RS11120 PF08546 Ketopantoate reductase PanE/ApbA C terminal VPBB_RS11120 PF02558 Ketopantoate reductase PanE/ApbA VPBB_RS11125 PF01965 DJ-1/PfpI family VPBB_RS11130 PF00266 Aminotransferase class-V VPBB_RS11135 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS11135 PF17158 Membrane-associated sensor, integral membrane domain VPBB_RS11140 PF02657 Fe-S metabolism associated domain VPBB_RS11145 PF00899 ThiF family VPBB_RS11150 PF06725 3D domain VPBB_RS11150 PF03562 MltA specific insert domain VPBB_RS11160 PF00583 Acetyltransferase (GNAT) family VPBB_RS11160 PF00696 Amino acid kinase family VPBB_RS11165 PF13538 UvrD-like helicase C-terminal domain VPBB_RS11170 PF12705 PD-(D/E)XK nuclease superfamily VPBB_RS11170 PF13361 UvrD-like helicase C-terminal domain VPBB_RS11170 PF00580 UvrD/REP helicase N-terminal domain VPBB_RS11180 PF17946 RecC C-terminal domain VPBB_RS11185 PF00884 Sulfatase VPBB_RS11185 PF11893 Domain of unknown function (DUF3413) VPBB_RS11195 PF03466 LysR substrate binding domain VPBB_RS11195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS11200 PF07130 YebG protein VPBB_RS11205 PF14602 Hexapeptide repeat of succinyl-transferase VPBB_RS11205 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VPBB_RS11210 PF03009 Glycerophosphoryl diester phosphodiesterase family VPBB_RS11215 PF07690 Major Facilitator Superfamily VPBB_RS11225 PF00230 Major intrinsic protein VPBB_RS11230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VPBB_RS11230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VPBB_RS11235 PF00455 DeoR C terminal sensor domain VPBB_RS11235 PF08220 DeoR-like helix-turn-helix domain VPBB_RS11240 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VPBB_RS11240 PF01266 FAD dependent oxidoreductase VPBB_RS11245 PF01544 CorA-like Mg2+ transporter protein VPBB_RS11265 PF01588 Putative tRNA binding domain VPBB_RS11270 PF00356 Bacterial regulatory proteins, lacI family VPBB_RS11275 PF00929 Exonuclease VPBB_RS11275 PF14579 Helix-hairpin-helix motif VPBB_RS11275 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VPBB_RS11275 PF07733 Bacterial DNA polymerase III alpha NTPase domain VPBB_RS11275 PF02811 PHP domain VPBB_RS11285 PF00474 Sodium:solute symporter family VPBB_RS11290 PF01263 Aldose 1-epimerase VPBB_RS11295 PF10509 Galactokinase galactose-binding signature VPBB_RS11295 PF08544 GHMP kinases C terminal VPBB_RS11295 PF00288 GHMP kinases N terminal domain VPBB_RS11300 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VPBB_RS11300 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VPBB_RS11305 PF16363 GDP-mannose 4,6 dehydratase VPBB_RS11310 PF00356 Bacterial regulatory proteins, lacI family VPBB_RS11315 PF16353 Domain of unknown function(DUF4981) VPBB_RS11315 PF02837 Glycosyl hydrolases family 2, sugar binding domain VPBB_RS11315 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VPBB_RS11315 PF00703 Glycosyl hydrolases family 2 VPBB_RS11315 PF02929 Beta galactosidase small chain VPBB_RS11320 PF04074 YhcH/YjgK/YiaL VPBB_RS11325 PF13520 Amino acid permease VPBB_RS11330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS11330 PF03466 LysR substrate binding domain VPBB_RS11360 PF00437 Type II/IV secretion system protein VPBB_RS11390 PF00263 Bacterial type II and III secretion system protein VPBB_RS11390 PF04972 BON domain VPBB_RS11390 PF13629 Pilus formation protein N terminal region VPBB_RS11415 PF02805 Metal binding domain of Ada VPBB_RS11415 PF12833 Helix-turn-helix domain VPBB_RS11420 PF00501 AMP-binding enzyme VPBB_RS11430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS11430 PF03466 LysR substrate binding domain VPBB_RS11435 PF03764 Elongation factor G, domain IV VPBB_RS11435 PF00009 Elongation factor Tu GTP binding domain VPBB_RS11435 PF14492 Elongation Factor G, domain II VPBB_RS11435 PF00679 Elongation factor G C-terminus VPBB_RS11435 PF03144 Elongation factor Tu domain 2 VPBB_RS11440 PF18073 Rubredoxin metal binding domain VPBB_RS11450 PF18429 Domain of unknown function (DUF5609) VPBB_RS11460 PF01048 Phosphorylase superfamily VPBB_RS11465 PF01676 Metalloenzyme superfamily VPBB_RS11470 PF02885 Glycosyl transferase family, helical bundle domain VPBB_RS11470 PF00591 Glycosyl transferase family, a/b domain VPBB_RS11470 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VPBB_RS11475 PF01791 DeoC/LacD family aldolase VPBB_RS11480 PF07670 Nucleoside recognition VPBB_RS11480 PF07662 Na+ dependent nucleoside transporter C-terminus VPBB_RS11480 PF01773 Na+ dependent nucleoside transporter N-terminus VPBB_RS11485 PF01026 TatD related DNase VPBB_RS11495 PF00009 Elongation factor Tu GTP binding domain VPBB_RS11495 PF16658 Class II release factor RF3, C-terminal domain VPBB_RS11495 PF03144 Elongation factor Tu domain 2 VPBB_RS11515 PF13508 Acetyltransferase (GNAT) domain VPBB_RS11520 PF02036 SCP-2 sterol transfer family VPBB_RS11525 PF00563 EAL domain VPBB_RS11525 PF03707 Bacterial signalling protein N terminal repeat VPBB_RS11525 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS11530 PF01136 Peptidase family U32 VPBB_RS11535 PF01136 Peptidase family U32 VPBB_RS11540 PF01554 MatE VPBB_RS11550 PF13181 Tetratricopeptide repeat VPBB_RS11550 PF07719 Tetratricopeptide repeat VPBB_RS11555 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VPBB_RS11555 PF00575 S1 RNA binding domain VPBB_RS11555 PF01138 3' exoribonuclease family, domain 1 VPBB_RS11555 PF03725 3' exoribonuclease family, domain 2 VPBB_RS11555 PF00013 KH domain VPBB_RS11560 PF00312 Ribosomal protein S15 VPBB_RS11565 PF01509 TruB family pseudouridylate synthase (N terminal domain) VPBB_RS11565 PF16198 tRNA pseudouridylate synthase B C-terminal domain VPBB_RS11565 PF09157 Pseudouridine synthase II TruB, C-terminal VPBB_RS11570 PF02033 Ribosome-binding factor A VPBB_RS11575 PF08364 Bacterial translation initiation factor IF-2 associated region VPBB_RS11575 PF11987 Translation-initiation factor 2 VPBB_RS11575 PF04760 Translation initiation factor IF-2, N-terminal region VPBB_RS11575 PF00009 Elongation factor Tu GTP binding domain VPBB_RS11580 PF08529 NusA N-terminal domain VPBB_RS11580 PF13184 NusA-like KH domain VPBB_RS11580 PF00575 S1 RNA binding domain VPBB_RS11585 PF17384 RimP C-terminal SH3 domain VPBB_RS11585 PF02576 RimP N-terminal domain VPBB_RS11600 PF03840 Preprotein translocase SecG subunit VPBB_RS11610 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPBB_RS11610 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VPBB_RS11610 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPBB_RS11610 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPBB_RS11615 PF00809 Pterin binding enzyme VPBB_RS11620 PF06480 FtsH Extracellular VPBB_RS11620 PF00004 ATPase family associated with various cellular activities (AAA) VPBB_RS11620 PF01434 Peptidase family M41 VPBB_RS11620 PF17862 AAA+ lid domain VPBB_RS11625 PF01728 FtsJ-like methyltransferase VPBB_RS11630 PF01985 CRS1 / YhbY (CRM) domain VPBB_RS11635 PF01272 Transcription elongation factor, GreA/GreB, C-term VPBB_RS11635 PF03449 Transcription elongation factor, N-terminal VPBB_RS11640 PF13609 Gram-negative porin VPBB_RS11645 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VPBB_RS11655 PF00579 tRNA synthetases class I (W and Y) VPBB_RS11660 PF08525 Opacity-associated protein A N-terminal motif VPBB_RS11660 PF01476 LysM domain VPBB_RS11660 PF01551 Peptidase family M23 VPBB_RS11665 PF00873 AcrB/AcrD/AcrF family VPBB_RS11675 PF01521 Iron-sulphur cluster biosynthesis VPBB_RS11680 PF00202 Aminotransferase class-III VPBB_RS11685 PF01594 AI-2E family transporter VPBB_RS11690 PF05175 Methyltransferase small domain VPBB_RS11690 PF08468 Methyltransferase small domain N-terminal VPBB_RS11695 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS11695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS11695 PF00072 Response regulator receiver domain VPBB_RS11695 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_RS11700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_RS11705 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS11710 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS11710 PF12911 N-terminal TM domain of oligopeptide transport permease C VPBB_RS11715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_RS11715 PF00005 ABC transporter VPBB_RS11720 PF00005 ABC transporter VPBB_RS11720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VPBB_RS11730 PF01869 BadF/BadG/BcrA/BcrD ATPase family VPBB_RS11735 PF02838 Glycosyl hydrolase family 20, domain 2 VPBB_RS11735 PF00728 Glycosyl hydrolase family 20, catalytic domain VPBB_RS11740 PF06165 Glycosyltransferase family 36 VPBB_RS11740 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VPBB_RS11745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VPBB_RS11745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VPBB_RS11745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VPBB_RS11745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VPBB_RS11750 PF00005 ABC transporter VPBB_RS11750 PF08402 TOBE domain VPBB_RS11760 PF13416 Bacterial extracellular solute-binding protein VPBB_RS11765 PF00909 Ammonium Transporter Family VPBB_RS11770 PF00543 Nitrogen regulatory protein P-II VPBB_RS11775 PF06062 Uncharacterised protein family (UPF0231) VPBB_RS11780 PF11791 Aconitate B N-terminal domain VPBB_RS11780 PF06434 Aconitate hydratase 2 N-terminus VPBB_RS11780 PF00330 Aconitase family (aconitate hydratase) VPBB_RS11785 PF01734 Patatin-like phospholipase VPBB_RS11790 PF00912 Transglycosylase VPBB_RS11790 PF14814 Bifunctional transglycosylase second domain VPBB_RS11790 PF00905 Penicillin binding protein transpeptidase domain VPBB_RS11795 PF04408 Helicase associated domain (HA2) VPBB_RS11795 PF00271 Helicase conserved C-terminal domain VPBB_RS11795 PF00270 DEAD/DEAH box helicase VPBB_RS11795 PF08482 ATP-dependent helicase C-terminal VPBB_RS11800 PF17746 SfsA N-terminal OB domain VPBB_RS11800 PF03749 Sugar fermentation stimulation protein RE domain VPBB_RS11805 PF01258 Prokaryotic dksA/traR C4-type zinc finger VPBB_RS11810 PF00749 tRNA synthetases class I (E and Q), catalytic domain VPBB_RS11815 PF01743 Poly A polymerase head domain VPBB_RS11815 PF12627 Probable RNA and SrmB- binding site of polymerase A VPBB_RS11815 PF12626 Polymerase A arginine-rich C-terminus VPBB_RS11820 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VPBB_RS11825 PF02548 Ketopantoate hydroxymethyltransferase VPBB_RS11830 PF02569 Pantoate-beta-alanine ligase VPBB_RS11835 PF03279 Bacterial lipid A biosynthesis acyltransferase VPBB_RS11840 PF01061 ABC-2 type transporter VPBB_RS11845 PF00005 ABC transporter VPBB_RS11850 PF01740 STAS domain VPBB_RS11850 PF00916 Sulfate permease family VPBB_RS11855 PF00484 Carbonic anhydrase VPBB_RS11860 PF00156 Phosphoribosyl transferase domain VPBB_RS11865 PF00440 Bacterial regulatory proteins, tetR family VPBB_RS11870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VPBB_RS11870 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_RS11875 PF02817 e3 binding domain VPBB_RS11875 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VPBB_RS11875 PF00364 Biotin-requiring enzyme VPBB_RS11880 PF00456 Transketolase, thiamine diphosphate binding domain VPBB_RS11880 PF17831 Pyruvate dehydrogenase E1 component middle domain VPBB_RS11885 PF00392 Bacterial regulatory proteins, gntR family VPBB_RS11885 PF07729 FCD domain VPBB_RS11890 PF01510 N-acetylmuramoyl-L-alanine amidase VPBB_RS11895 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VPBB_RS11895 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VPBB_RS11900 PF07963 Prokaryotic N-terminal methylation motif VPBB_RS11900 PF00114 Pilin (bacterial filament) VPBB_RS11905 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VPBB_RS11905 PF00437 Type II/IV secretion system protein VPBB_RS11910 PF00482 Type II secretion system (T2SS), protein F VPBB_RS11915 PF06750 Bacterial Peptidase A24 N-terminal domain VPBB_RS11915 PF01478 Type IV leader peptidase family VPBB_RS11920 PF01121 Dephospho-CoA kinase VPBB_RS11925 PF07072 Cell division protein VPBB_RS11930 PF03884 DNA gyrase inhibitor YacG VPBB_RS11935 PF01245 Ribosomal protein L19 VPBB_RS11940 PF01746 tRNA (Guanine-1)-methyltransferase VPBB_RS11945 PF01782 RimM N-terminal domain VPBB_RS11945 PF05239 PRC-barrel domain VPBB_RS11950 PF00886 Ribosomal protein S16 VPBB_RS11955 PF02978 Signal peptide binding domain VPBB_RS11955 PF02881 SRP54-type protein, helical bundle domain VPBB_RS11955 PF00448 SRP54-type protein, GTPase domain VPBB_RS11960 PF01578 Cytochrome C assembly protein VPBB_RS11965 PF00571 CBS domain VPBB_RS11965 PF01595 Cyclin M transmembrane N-terminal domain VPBB_RS11965 PF03471 Transporter associated domain VPBB_RS11970 PF02664 S-Ribosylhomocysteinase (LuxS) VPBB_RS11980 PF04262 Glutamate-cysteine ligase VPBB_RS11985 PF05193 Peptidase M16 inactive domain VPBB_RS11985 PF00675 Insulinase (Peptidase family M16) VPBB_RS11990 PF09335 SNARE associated Golgi protein VPBB_RS11995 PF08240 Alcohol dehydrogenase GroES-like domain VPBB_RS11995 PF00107 Zinc-binding dehydrogenase VPBB_RS12000 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VPBB_RS12005 PF00364 Biotin-requiring enzyme VPBB_RS12005 PF02436 Conserved carboxylase domain VPBB_RS12005 PF00682 HMGL-like VPBB_RS12010 PF04277 Oxaloacetate decarboxylase, gamma chain VPBB_RS12070 PF02599 Global regulator protein family VPBB_RS12075 PF13840 ACT domain VPBB_RS12075 PF01842 ACT domain VPBB_RS12075 PF00696 Amino acid kinase family VPBB_RS12080 PF01411 tRNA synthetases class II (A) VPBB_RS12080 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VPBB_RS12080 PF02272 DHHA1 domain VPBB_RS12085 PF02631 RecX family VPBB_RS12090 PF00154 recA bacterial DNA recombination protein VPBB_RS12095 PF02464 Competence-damaged protein VPBB_RS12100 PF01624 MutS domain I VPBB_RS12100 PF05188 MutS domain II VPBB_RS12100 PF05192 MutS domain III VPBB_RS12100 PF05190 MutS family domain IV VPBB_RS12100 PF00488 MutS domain V VPBB_RS12105 PF00140 Sigma-70 factor, region 1.2 VPBB_RS12105 PF04542 Sigma-70 region 2 VPBB_RS12105 PF04539 Sigma-70 region 3 VPBB_RS12105 PF04545 Sigma-70, region 4 VPBB_RS12110 PF01476 LysM domain VPBB_RS12110 PF01551 Peptidase family M23 VPBB_RS12120 PF01975 Survival protein SurE VPBB_RS12125 PF01142 tRNA pseudouridine synthase D (TruD) VPBB_RS12130 PF02542 YgbB family VPBB_RS12135 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VPBB_RS12140 PF04977 Septum formation initiator VPBB_RS12145 PF03952 Enolase, N-terminal domain VPBB_RS12145 PF00113 Enolase, C-terminal TIM barrel domain VPBB_RS12150 PF00117 Glutamine amidotransferase class-I VPBB_RS12150 PF06418 CTP synthase N-terminus VPBB_RS12155 PF03819 MazG nucleotide pyrophosphohydrolase domain VPBB_RS12160 PF02824 TGS domain VPBB_RS12160 PF04607 Region found in RelA / SpoT proteins VPBB_RS12160 PF13291 ACT domain VPBB_RS12165 PF01938 TRAM domain VPBB_RS12165 PF05958 tRNA (Uracil-5-)-methyltransferase VPBB_RS12170 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VPBB_RS12170 PF00072 Response regulator receiver domain VPBB_RS12170 PF01627 Hpt domain VPBB_RS12170 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS12170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS12170 PF00672 HAMP domain VPBB_RS12175 PF01648 4'-phosphopantetheinyl transferase superfamily VPBB_RS12180 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VPBB_RS12185 PF02565 Recombination protein O C terminal VPBB_RS12185 PF11967 Recombination protein O N terminal VPBB_RS12190 PF01926 50S ribosome-binding GTPase VPBB_RS12190 PF07650 KH domain VPBB_RS12195 PF14622 Ribonuclease-III-like VPBB_RS12195 PF00035 Double-stranded RNA binding motif VPBB_RS12200 PF10502 Signal peptidase, peptidase S26 VPBB_RS12205 PF06421 GTP-binding protein LepA C-terminus VPBB_RS12205 PF03144 Elongation factor Tu domain 2 VPBB_RS12205 PF00679 Elongation factor G C-terminus VPBB_RS12205 PF00009 Elongation factor Tu GTP binding domain VPBB_RS12215 PF03888 MucB/RseB N-terminal domain VPBB_RS12215 PF17188 MucB/RseB C-terminal domain VPBB_RS12220 PF03873 Anti sigma-E protein RseA, C-terminal domain VPBB_RS12220 PF03872 Anti sigma-E protein RseA, N-terminal domain VPBB_RS12225 PF08281 Sigma-70, region 4 VPBB_RS12225 PF04542 Sigma-70 region 2 VPBB_RS12230 PF00890 FAD binding domain VPBB_RS12230 PF02910 Fumarate reductase flavoprotein C-term VPBB_RS12235 PF03937 Flavinator of succinate dehydrogenase VPBB_RS12240 PF01571 Aminomethyltransferase folate-binding domain VPBB_RS12255 PF01494 FAD binding domain VPBB_RS12260 PF01494 FAD binding domain VPBB_RS12265 PF03695 Uncharacterised protein family (UPF0149) VPBB_RS12270 PF05164 Cell division protein ZapA VPBB_RS12275 PF01812 5-formyltetrahydrofolate cyclo-ligase family VPBB_RS12280 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VPBB_RS12285 PF01842 ACT domain VPBB_RS12285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPBB_RS12285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VPBB_RS12290 PF04402 Protein of unknown function (DUF541) VPBB_RS12295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS12295 PF03466 LysR substrate binding domain VPBB_RS12300 PF01810 LysE type translocator VPBB_RS12305 PF04073 Aminoacyl-tRNA editing domain VPBB_RS12310 PF05552 Conserved TM helix VPBB_RS12310 PF00924 Mechanosensitive ion channel VPBB_RS12315 PF01116 Fructose-bisphosphate aldolase class-II VPBB_RS12320 PF00162 Phosphoglycerate kinase VPBB_RS12325 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPBB_RS12325 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VPBB_RS12330 PF00593 TonB dependent receptor VPBB_RS12330 PF07715 TonB-dependent Receptor Plug Domain VPBB_RS12335 PF03466 LysR substrate binding domain VPBB_RS12335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS12340 PF02779 Transketolase, pyrimidine binding domain VPBB_RS12340 PF02780 Transketolase, C-terminal domain VPBB_RS12340 PF00456 Transketolase, thiamine diphosphate binding domain VPBB_RS12350 PF02772 S-adenosylmethionine synthetase, central domain VPBB_RS12350 PF00438 S-adenosylmethionine synthetase, N-terminal domain VPBB_RS12350 PF02773 S-adenosylmethionine synthetase, C-terminal domain VPBB_RS12360 PF10263 SprT-like family VPBB_RS12360 PF17283 SprT-like zinc ribbon domain VPBB_RS12365 PF04231 Endonuclease I VPBB_RS12370 PF04452 RNA methyltransferase VPBB_RS12375 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VPBB_RS12375 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VPBB_RS12380 PF02622 Uncharacterized ACR, COG1678 VPBB_RS12385 PF03652 Holliday junction resolvase VPBB_RS12390 PF00437 Type II/IV secretion system protein VPBB_RS12395 PF00437 Type II/IV secretion system protein VPBB_RS12400 PF01168 Alanine racemase, N-terminal domain VPBB_RS12405 PF03807 NADP oxidoreductase coenzyme F420-dependent VPBB_RS12405 PF14748 Pyrroline-5-carboxylate reductase dimerisation VPBB_RS12410 PF02325 YGGT family VPBB_RS12415 PF02594 Uncharacterised ACR, YggU family COG1872 VPBB_RS12425 PF01725 Ham1 family VPBB_RS12430 PF06969 HemN C-terminal domain VPBB_RS12430 PF04055 Radical SAM superfamily VPBB_RS12435 PF04960 Glutaminase VPBB_RS12440 PF02086 D12 class N6 adenine-specific DNA methyltransferase VPBB_RS12445 PF02390 Putative methyltransferase VPBB_RS12450 PF14815 NUDIX domain VPBB_RS12450 PF00633 Helix-hairpin-helix motif VPBB_RS12450 PF00730 HhH-GPD superfamily base excision DNA repair protein VPBB_RS12455 PF04362 Bacterial Fe(2+) trafficking VPBB_RS12460 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VPBB_RS12460 PF01464 Transglycosylase SLT domain VPBB_RS12500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS12500 PF17200 Single Cache domain 2 VPBB_RS12500 PF00672 HAMP domain VPBB_RS12530 PF00171 Aldehyde dehydrogenase family VPBB_RS12575 PF00072 Response regulator receiver domain VPBB_RS12580 PF00356 Bacterial regulatory proteins, lacI family VPBB_RS12580 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VPBB_RS12585 PF04794 YdjC-like protein VPBB_RS12590 PF02056 Family 4 glycosyl hydrolase VPBB_RS12590 PF11975 Family 4 glycosyl hydrolase C-terminal domain VPBB_RS12595 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VPBB_RS12600 PF02378 Phosphotransferase system, EIIC VPBB_RS12605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VPBB_RS12610 PF01522 Polysaccharide deacetylase VPBB_RS12620 PF00106 short chain dehydrogenase VPBB_RS12625 PF10011 Predicted membrane protein (DUF2254) VPBB_RS12635 PF03739 Lipopolysaccharide export system permease LptF/LptG VPBB_RS12640 PF03739 Lipopolysaccharide export system permease LptF/LptG VPBB_RS12645 PF02789 Cytosol aminopeptidase family, N-terminal domain VPBB_RS12645 PF00883 Cytosol aminopeptidase family, catalytic domain VPBB_RS12650 PF04364 DNA polymerase III chi subunit, HolC VPBB_RS12655 PF08264 Anticodon-binding domain of tRNA VPBB_RS12655 PF00133 tRNA synthetases class I (I, L, M and V) VPBB_RS12655 PF10458 Valyl tRNA synthetase tRNA binding arm VPBB_RS12665 PF00583 Acetyltransferase (GNAT) family VPBB_RS12675 PF06877 Regulator of ribonuclease activity B VPBB_RS12685 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VPBB_RS12685 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VPBB_RS12690 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VPBB_RS12690 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VPBB_RS12695 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VPBB_RS12695 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VPBB_RS12700 PF01042 Endoribonuclease L-PSP VPBB_RS12705 PF01553 Acyltransferase VPBB_RS12710 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VPBB_RS12715 PF01722 BolA-like protein VPBB_RS12725 PF05494 MlaC protein VPBB_RS12730 PF02470 MlaD protein VPBB_RS12735 PF02405 Permease MlaE VPBB_RS12740 PF00005 ABC transporter VPBB_RS12745 PF01699 Sodium/calcium exchanger protein VPBB_RS12750 PF00571 CBS domain VPBB_RS12750 PF01380 SIS domain VPBB_RS12760 PF03968 OstA-like protein VPBB_RS12765 PF12399 Branched-chain amino acid ATP-binding cassette transporter VPBB_RS12765 PF00005 ABC transporter VPBB_RS12770 PF04552 Sigma-54, DNA binding domain VPBB_RS12770 PF04963 Sigma-54 factor, core binding domain VPBB_RS12770 PF00309 Sigma-54 factor, Activator interacting domain (AID) VPBB_RS12775 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VPBB_RS12780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VPBB_RS12785 PF03668 P-loop ATPase protein family VPBB_RS12790 PF00381 PTS HPr component phosphorylation site VPBB_RS12795 PF01769 Divalent cation transporter VPBB_RS12795 PF03448 MgtE intracellular N domain VPBB_RS12795 PF00571 CBS domain VPBB_RS12800 PF01523 Putative modulator of DNA gyrase VPBB_RS12805 PF04751 Protein of unknown function (DUF615) VPBB_RS12810 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPBB_RS12810 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VPBB_RS12815 PF00849 RNA pseudouridylate synthase VPBB_RS12825 PF18337 RapA N-terminal Tudor like domain VPBB_RS12825 PF00176 SNF2 family N-terminal domain VPBB_RS12825 PF12137 RNA polymerase recycling family C-terminal VPBB_RS12825 PF00271 Helicase conserved C-terminal domain VPBB_RS12825 PF18339 RapA N-terminal Tudor like domain 1 VPBB_RS12830 PF13638 PIN domain VPBB_RS12830 PF02562 PhoH-like protein VPBB_RS12835 PF01523 Putative modulator of DNA gyrase VPBB_RS12840 PF00795 Carbon-nitrogen hydrolase VPBB_RS12845 PF13502 AsmA-like C-terminal region VPBB_RS12845 PF13116 Protein of unknown function VPBB_RS12850 PF00575 S1 RNA binding domain VPBB_RS12850 PF10150 Ribonuclease E/G family VPBB_RS12855 PF02545 Maf-like protein VPBB_RS12860 PF04093 rod shape-determining protein MreD VPBB_RS12865 PF04085 rod shape-determining protein MreC VPBB_RS12905 PF07963 Prokaryotic N-terminal methylation motif VPBB_RS12915 PF00482 Type II secretion system (T2SS), protein F VPBB_RS12920 PF00437 Type II/IV secretion system protein VPBB_RS12920 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VPBB_RS12930 PF01471 Putative peptidoglycan binding domain VPBB_RS12930 PF13401 AAA domain VPBB_RS12935 PF07660 Secretin and TonB N terminus short domain VPBB_RS12935 PF00263 Bacterial type II and III secretion system protein VPBB_RS12935 PF11741 AMIN domain VPBB_RS12935 PF03958 Bacterial type II/III secretion system short domain VPBB_RS12955 PF00563 EAL domain VPBB_RS12955 PF17157 Gammaproteobacterial periplasmic sensor domain VPBB_RS12955 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS12960 PF00436 Single-strand binding protein family VPBB_RS12965 PF00196 Bacterial regulatory proteins, luxR family VPBB_RS12970 PF00483 Nucleotidyl transferase VPBB_RS12975 PF17760 UvrA interaction domain VPBB_RS12975 PF17755 UvrA DNA-binding domain VPBB_RS12975 PF00005 ABC transporter VPBB_RS12985 PF00266 Aminotransferase class-V VPBB_RS12995 PF00696 Amino acid kinase family VPBB_RS12995 PF01842 ACT domain VPBB_RS13000 PF00809 Pterin binding enzyme VPBB_RS13000 PF02310 B12 binding domain VPBB_RS13000 PF02607 B12 binding domain VPBB_RS13000 PF02574 Homocysteine S-methyltransferase VPBB_RS13000 PF02965 Vitamin B12 dependent methionine synthase, activation domain VPBB_RS13005 PF00999 Sodium/hydrogen exchanger family VPBB_RS13040 PF01507 Phosphoadenosine phosphosulfate reductase family VPBB_RS13045 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VPBB_RS13045 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VPBB_RS13050 PF00258 Flavodoxin VPBB_RS13050 PF00667 FAD binding domain VPBB_RS13050 PF00175 Oxidoreductase NAD-binding domain VPBB_RS13070 PF01207 Dihydrouridine synthase (Dus) VPBB_RS13075 PF00589 Phage integrase family VPBB_RS13075 PF02899 Phage integrase, N-terminal SAM-like domain VPBB_RS13100 PF06892 Phage regulatory protein CII (CP76) VPBB_RS13140 PF05840 Bacteriophage replication gene A protein (GPA) VPBB_RS13290 PF01475 Ferric uptake regulator family VPBB_RS13300 PF00342 Phosphoglucose isomerase VPBB_RS13305 PF01894 Uncharacterised protein family UPF0047 VPBB_RS13315 PF00842 Alanine racemase, C-terminal domain VPBB_RS13315 PF01168 Alanine racemase, N-terminal domain VPBB_RS13320 PF00772 DnaB-like helicase N terminal domain VPBB_RS13320 PF03796 DnaB-like helicase C terminal domain VPBB_RS13330 PF01281 Ribosomal protein L9, N-terminal domain VPBB_RS13330 PF03948 Ribosomal protein L9, C-terminal domain VPBB_RS13335 PF01084 Ribosomal protein S18 VPBB_RS13340 PF00436 Single-strand binding protein family VPBB_RS13345 PF01250 Ribosomal protein S6 VPBB_RS13350 PF00834 Ribulose-phosphate 3 epimerase family VPBB_RS13355 PF02086 D12 class N6 adenine-specific DNA methyltransferase VPBB_RS13365 PF01761 3-dehydroquinate synthase VPBB_RS13370 PF01202 Shikimate kinase VPBB_RS13375 PF03958 Bacterial type II/III secretion system short domain VPBB_RS13375 PF07660 Secretin and TonB N terminus short domain VPBB_RS13375 PF00263 Bacterial type II and III secretion system protein VPBB_RS13375 PF11741 AMIN domain VPBB_RS13380 PF04351 Pilus assembly protein, PilP VPBB_RS13390 PF05137 Fimbrial assembly protein (PilN) VPBB_RS13400 PF17092 Penicillin-binding protein OB-like domain VPBB_RS13400 PF00912 Transglycosylase VPBB_RS13400 PF00905 Penicillin binding protein transpeptidase domain VPBB_RS13405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS13405 PF03466 LysR substrate binding domain VPBB_RS13410 PF00462 Glutaredoxin VPBB_RS13410 PF08534 Redoxin VPBB_RS13420 PF00583 Acetyltransferase (GNAT) family VPBB_RS13420 PF14698 Argininosuccinate lyase C-terminal VPBB_RS13420 PF00206 Lyase VPBB_RS13425 PF00764 Arginosuccinate synthase VPBB_RS13430 PF00696 Amino acid kinase family VPBB_RS13435 PF02774 Semialdehyde dehydrogenase, dimerisation domain VPBB_RS13435 PF01118 Semialdehyde dehydrogenase, NAD binding domain VPBB_RS13440 PF07687 Peptidase dimerisation domain VPBB_RS13440 PF01546 Peptidase family M20/M25/M40 VPBB_RS13445 PF00311 Phosphoenolpyruvate carboxylase VPBB_RS13455 PF02219 Methylenetetrahydrofolate reductase VPBB_RS13460 PF03447 Homoserine dehydrogenase, NAD binding domain VPBB_RS13460 PF00742 Homoserine dehydrogenase VPBB_RS13460 PF00696 Amino acid kinase family VPBB_RS13465 PF01053 Cys/Met metabolism PLP-dependent enzyme VPBB_RS13470 PF01340 Met Apo-repressor, MetJ VPBB_RS13475 PF03949 Malic enzyme, NAD binding domain VPBB_RS13475 PF00390 Malic enzyme, N-terminal domain VPBB_RS13480 PF00210 Ferritin-like domain VPBB_RS13485 PF04324 BFD-like [2Fe-2S] binding domain VPBB_RS13490 PF03143 Elongation factor Tu C-terminal domain VPBB_RS13490 PF03144 Elongation factor Tu domain 2 VPBB_RS13490 PF00009 Elongation factor Tu GTP binding domain VPBB_RS13495 PF14492 Elongation Factor G, domain II VPBB_RS13495 PF00679 Elongation factor G C-terminus VPBB_RS13495 PF03144 Elongation factor Tu domain 2 VPBB_RS13495 PF00009 Elongation factor Tu GTP binding domain VPBB_RS13495 PF03764 Elongation factor G, domain IV VPBB_RS13500 PF00177 Ribosomal protein S7p/S5e VPBB_RS13505 PF00164 Ribosomal protein S12/S23 VPBB_RS13510 PF04077 DsrH like protein VPBB_RS13515 PF02635 DsrE/DsrF-like family VPBB_RS13520 PF02635 DsrE/DsrF-like family VPBB_RS13525 PF08348 YheO-like PAS domain VPBB_RS13525 PF13309 HTH domain VPBB_RS13530 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPBB_RS13530 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VPBB_RS13540 PF04102 SlyX VPBB_RS13545 PF01112 Asparaginase VPBB_RS13550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VPBB_RS13560 PF00999 Sodium/hydrogen exchanger family VPBB_RS13560 PF02254 TrkA-N domain VPBB_RS13565 PF02525 Flavodoxin-like fold VPBB_RS13570 PF00005 ABC transporter VPBB_RS13570 PF12848 ABC transporter VPBB_RS13580 PF00561 alpha/beta hydrolase fold VPBB_RS13585 PF06794 Uncharacterised protein family (UPF0270) VPBB_RS13590 PF00485 Phosphoribulokinase / Uridine kinase family VPBB_RS13595 PF00027 Cyclic nucleotide-binding domain VPBB_RS13595 PF13545 Crp-like helix-turn-helix domain VPBB_RS13605 PF00171 Aldehyde dehydrogenase family VPBB_RS13610 PF04958 Arginine N-succinyltransferase beta subunit VPBB_RS13615 PF00202 Aminotransferase class-III VPBB_RS13620 PF00117 Glutamine amidotransferase class-I VPBB_RS13635 PF00579 tRNA synthetases class I (W and Y) VPBB_RS13640 PF13419 Haloacid dehalogenase-like hydrolase VPBB_RS13645 PF00588 SpoU rRNA Methylase family VPBB_RS13645 PF08032 RNA 2'-O ribose methyltransferase substrate binding VPBB_RS13650 PF08461 Ribonuclease R winged-helix domain VPBB_RS13650 PF08206 Ribonuclease B OB domain VPBB_RS13650 PF00575 S1 RNA binding domain VPBB_RS13650 PF17876 Cold shock domain VPBB_RS13650 PF00773 RNB domain VPBB_RS13655 PF02082 Transcriptional regulator VPBB_RS13660 PF00042 Globin VPBB_RS13660 PF00175 Oxidoreductase NAD-binding domain VPBB_RS13660 PF00970 Oxidoreductase FAD-binding domain VPBB_RS13665 PF08238 Sel1 repeat VPBB_RS13670 PF00709 Adenylosuccinate synthetase VPBB_RS13675 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VPBB_RS13680 PF01145 SPFH domain / Band 7 family VPBB_RS13685 PF01145 SPFH domain / Band 7 family VPBB_RS13685 PF12221 Bacterial membrane protein N terminal VPBB_RS13690 PF01926 50S ribosome-binding GTPase VPBB_RS13690 PF13167 GTP-binding GTPase N-terminal VPBB_RS13690 PF16360 GTP-binding GTPase Middle Region VPBB_RS13695 PF17209 Hfq protein VPBB_RS13705 PF08676 MutL C terminal dimerisation domain VPBB_RS13705 PF01119 DNA mismatch repair protein, C-terminal domain VPBB_RS13710 PF01520 N-acetylmuramoyl-L-alanine amidase VPBB_RS13715 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VPBB_RS13720 PF08331 Domain of unknown function (DUF1730) VPBB_RS13790 PF00929 Exonuclease VPBB_RS13795 PF03193 RsgA GTPase VPBB_RS13800 PF02666 Phosphatidylserine decarboxylase VPBB_RS13805 PF00939 Sodium:sulfate symporter transmembrane region VPBB_RS13810 PF00672 HAMP domain VPBB_RS13810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VPBB_RS13810 PF02743 Cache domain VPBB_RS13820 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VPBB_RS13820 PF01676 Metalloenzyme superfamily VPBB_RS13830 PF00581 Rhodanese-like domain VPBB_RS13835 PF02556 Preprotein translocase subunit SecB VPBB_RS13840 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VPBB_RS13840 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VPBB_RS13845 PF06426 Serine acetyltransferase, N-terminal VPBB_RS13845 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_RS13850 PF01551 Peptidase family M23 VPBB_RS13860 PF00440 Bacterial regulatory proteins, tetR family VPBB_RS13860 PF08360 QacR-like protein, C-terminal region VPBB_RS13870 PF00152 tRNA synthetases class II (D, K and N) VPBB_RS13875 PF00890 FAD binding domain VPBB_RS13875 PF02910 Fumarate reductase flavoprotein C-term VPBB_RS13880 PF13183 4Fe-4S dicluster domain VPBB_RS13880 PF13085 2Fe-2S iron-sulfur cluster binding domain VPBB_RS13885 PF02300 Fumarate reductase subunit C VPBB_RS13890 PF02313 Fumarate reductase subunit D VPBB_RS13900 PF09285 Elongation factor P, C-terminal VPBB_RS13900 PF08207 Elongation factor P (EF-P) KOW-like domain VPBB_RS13900 PF01132 Elongation factor P (EF-P) OB domain VPBB_RS13905 PF04055 Radical SAM superfamily VPBB_RS13910 PF00842 Alanine racemase, C-terminal domain VPBB_RS13910 PF01168 Alanine racemase, N-terminal domain VPBB_RS13920 PF02308 MgtC family VPBB_RS13930 PF00118 TCP-1/cpn60 chaperonin family VPBB_RS13935 PF00166 Chaperonin 10 Kd subunit VPBB_RS13940 PF01554 MatE VPBB_RS13945 PF00365 Phosphofructokinase VPBB_RS13950 PF16916 Dimerisation domain of Zinc Transporter VPBB_RS13950 PF01545 Cation efflux family VPBB_RS13960 PF00072 Response regulator receiver domain VPBB_RS13960 PF00486 Transcriptional regulatory protein, C terminal VPBB_RS13965 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS13965 PF00672 HAMP domain VPBB_RS13965 PF16527 Two-component sensor protein CpxA, periplasmic domain VPBB_RS13965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS13970 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VPBB_RS13970 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VPBB_RS13975 PF00588 SpoU rRNA Methylase family VPBB_RS13980 PF04186 FxsA cytoplasmic membrane protein VPBB_RS13985 PF00206 Lyase VPBB_RS13985 PF10415 Fumarase C C-terminus VPBB_RS13990 PF03605 Anaerobic c4-dicarboxylate membrane transporter VPBB_RS13995 PF11412 Disulphide bond corrector protein DsbC VPBB_RS13995 PF02683 Cytochrome C biogenesis protein transmembrane region VPBB_RS14000 PF00196 Bacterial regulatory proteins, luxR family VPBB_RS14000 PF00072 Response regulator receiver domain VPBB_RS14005 PF00999 Sodium/hydrogen exchanger family VPBB_RS14005 PF03471 Transporter associated domain VPBB_RS14005 PF02080 TrkA-C domain VPBB_RS14015 PF00474 Sodium:solute symporter family VPBB_RS14030 PF00206 Lyase VPBB_RS14030 PF10415 Fumarase C C-terminus VPBB_RS14035 PF00072 Response regulator receiver domain VPBB_RS14035 PF09308 LuxQ, periplasmic VPBB_RS14035 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS14035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS14040 PF12832 MFS_1 like family VPBB_RS14055 PF13193 AMP-binding enzyme C-terminal domain VPBB_RS14055 PF16177 Acetyl-coenzyme A synthetase N-terminus VPBB_RS14055 PF00501 AMP-binding enzyme VPBB_RS14060 PF01220 Dehydroquinase class II VPBB_RS14065 PF00364 Biotin-requiring enzyme VPBB_RS14070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VPBB_RS14070 PF00289 Biotin carboxylase, N-terminal domain VPBB_RS14070 PF02785 Biotin carboxylase C-terminal domain VPBB_RS14080 PF01207 Dihydrouridine synthase (Dus) VPBB_RS14085 PF02954 Bacterial regulatory protein, Fis family VPBB_RS14095 PF00005 ABC transporter VPBB_RS14095 PF12848 ABC transporter VPBB_RS14100 PF05230 MASE2 domain VPBB_RS14100 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS14175 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VPBB_RS14175 PF01276 Orn/Lys/Arg decarboxylase, major domain VPBB_RS14175 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VPBB_RS14180 PF13520 Amino acid permease VPBB_RS14185 PF18500 CadC C-terminal domain 1 VPBB_RS14185 PF00486 Transcriptional regulatory protein, C terminal VPBB_RS14190 PF13411 MerR HTH family regulatory protein VPBB_RS14195 PF01808 AICARFT/IMPCHase bienzyme VPBB_RS14195 PF02142 MGS-like domain VPBB_RS14200 PF02843 Phosphoribosylglycinamide synthetase, C domain VPBB_RS14200 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VPBB_RS14200 PF02844 Phosphoribosylglycinamide synthetase, N domain VPBB_RS14210 PF00216 Bacterial DNA-binding protein VPBB_RS14215 PF00571 CBS domain VPBB_RS14215 PF01595 Cyclin M transmembrane N-terminal domain VPBB_RS14220 PF04222 Protein of unknown function (DUF416) VPBB_RS14225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VPBB_RS14230 PF03167 Uracil DNA glycosylase superfamily VPBB_RS14235 PF01208 Uroporphyrinogen decarboxylase (URO-D) VPBB_RS14250 PF09297 NADH pyrophosphatase zinc ribbon domain VPBB_RS14250 PF00293 NUDIX domain VPBB_RS14255 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VPBB_RS14260 PF05000 RNA polymerase Rpb1, domain 4 VPBB_RS14260 PF04997 RNA polymerase Rpb1, domain 1 VPBB_RS14260 PF00623 RNA polymerase Rpb1, domain 2 VPBB_RS14260 PF04983 RNA polymerase Rpb1, domain 3 VPBB_RS14260 PF04998 RNA polymerase Rpb1, domain 5 VPBB_RS14265 PF04561 RNA polymerase Rpb2, domain 2 VPBB_RS14265 PF04560 RNA polymerase Rpb2, domain 7 VPBB_RS14265 PF04565 RNA polymerase Rpb2, domain 3 VPBB_RS14265 PF04563 RNA polymerase beta subunit VPBB_RS14265 PF00562 RNA polymerase Rpb2, domain 6 VPBB_RS14265 PF10385 RNA polymerase beta subunit external 1 domain VPBB_RS14270 PF00542 Ribosomal protein L7/L12 C-terminal domain VPBB_RS14270 PF16320 Ribosomal protein L7/L12 dimerisation domain VPBB_RS14275 PF00466 Ribosomal protein L10 VPBB_RS14280 PF00687 Ribosomal protein L1p/L10e family VPBB_RS14285 PF00298 Ribosomal protein L11, RNA binding domain VPBB_RS14285 PF03946 Ribosomal protein L11, N-terminal domain VPBB_RS14290 PF02357 Transcription termination factor nusG VPBB_RS14290 PF00467 KOW motif VPBB_RS14295 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VPBB_RS14300 PF03144 Elongation factor Tu domain 2 VPBB_RS14300 PF03143 Elongation factor Tu C-terminal domain VPBB_RS14300 PF00009 Elongation factor Tu GTP binding domain VPBB_RS14325 PF00485 Phosphoribulokinase / Uridine kinase family VPBB_RS14330 PF03099 Biotin/lipoate A/B protein ligase family VPBB_RS14330 PF02237 Biotin protein ligase C terminal domain VPBB_RS14330 PF08279 HTH domain VPBB_RS14335 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VPBB_RS14335 PF01565 FAD binding domain VPBB_RS14345 PF13091 PLD-like domain VPBB_RS14390 PF01177 Asp/Glu/Hydantoin racemase VPBB_RS14400 PF00593 TonB dependent receptor VPBB_RS14400 PF07715 TonB-dependent Receptor Plug Domain VPBB_RS14405 PF05958 tRNA (Uracil-5-)-methyltransferase VPBB_RS14415 PF00440 Bacterial regulatory proteins, tetR family VPBB_RS14420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VPBB_RS14420 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_RS14425 PF01554 MatE VPBB_RS14430 PF04072 Leucine carboxyl methyltransferase VPBB_RS14435 PF00717 Peptidase S24-like VPBB_RS14435 PF01726 LexA DNA binding domain VPBB_RS14440 PF01553 Acyltransferase VPBB_RS14445 PF01040 UbiA prenyltransferase family VPBB_RS14450 PF04345 Chorismate lyase VPBB_RS14455 PF03748 Flagellar basal body-associated protein FliL VPBB_RS14460 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VPBB_RS14460 PF01694 Rhomboid family VPBB_RS14465 PF00581 Rhodanese-like domain VPBB_RS14470 PF04545 Sigma-70, region 4 VPBB_RS14470 PF04542 Sigma-70 region 2 VPBB_RS14470 PF00140 Sigma-70 factor, region 1.2 VPBB_RS14475 PF18075 FtsX extracellular domain VPBB_RS14480 PF00005 ABC transporter VPBB_RS14485 PF00448 SRP54-type protein, GTPase domain VPBB_RS14485 PF02881 SRP54-type protein, helical bundle domain VPBB_RS14500 PF01914 MarC family integral membrane protein VPBB_RS14555 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VPBB_RS14555 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VPBB_RS14560 PF01022 Bacterial regulatory protein, arsR family VPBB_RS14565 PF00563 EAL domain VPBB_RS14565 PF08668 HDOD domain VPBB_RS14570 PF01810 LysE type translocator VPBB_RS14575 PF12146 Serine aminopeptidase, S33 VPBB_RS14595 PF03942 DTW domain VPBB_RS14600 PF00563 EAL domain VPBB_RS14600 PF10442 FIST C domain VPBB_RS14600 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS14600 PF08495 FIST N domain VPBB_RS14605 PF13419 Haloacid dehalogenase-like hydrolase VPBB_RS14610 PF00589 Phage integrase family VPBB_RS14610 PF02899 Phage integrase, N-terminal SAM-like domain VPBB_RS14620 PF01678 Diaminopimelate epimerase VPBB_RS14625 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VPBB_RS14625 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VPBB_RS14635 PF01491 Frataxin-like domain VPBB_RS14640 PF01295 Adenylate cyclase, class-I VPBB_RS14640 PF12633 Adenylate cyclase NT domain VPBB_RS14645 PF03900 Porphobilinogen deaminase, C-terminal domain VPBB_RS14645 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VPBB_RS14650 PF02602 Uroporphyrinogen-III synthase HemD VPBB_RS14655 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VPBB_RS14660 PF07219 HemY protein N-terminus VPBB_RS14695 PF00175 Oxidoreductase NAD-binding domain VPBB_RS14700 PF00111 2Fe-2S iron-sulfur cluster binding domain VPBB_RS14705 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VPBB_RS14715 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPBB_RS14715 PF07498 Rho termination factor, N-terminal domain VPBB_RS14715 PF07497 Rho termination factor, RNA-binding domain VPBB_RS14720 PF00085 Thioredoxin VPBB_RS14725 PF00271 Helicase conserved C-terminal domain VPBB_RS14725 PF00270 DEAD/DEAH box helicase VPBB_RS14730 PF02541 Ppx/GppA phosphatase family VPBB_RS14735 PF02592 Putative vitamin uptake transporter VPBB_RS14745 PF16124 RecQ zinc-binding VPBB_RS14745 PF00570 HRDC domain VPBB_RS14745 PF00270 DEAD/DEAH box helicase VPBB_RS14745 PF00271 Helicase conserved C-terminal domain VPBB_RS14745 PF09382 RQC domain VPBB_RS14750 PF00892 EamA-like transporter family VPBB_RS14760 PF01810 LysE type translocator VPBB_RS14770 PF13361 UvrD-like helicase C-terminal domain VPBB_RS14770 PF00580 UvrD/REP helicase N-terminal domain VPBB_RS14780 PF05114 Protein of unknown function (DUF692) VPBB_RS14800 PF07690 Major Facilitator Superfamily VPBB_RS14805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS14805 PF03466 LysR substrate binding domain VPBB_RS14810 PF00557 Metallopeptidase family M24 VPBB_RS14810 PF00557 Metallopeptidase family M24 VPBB_RS14810 PF01321 Creatinase/Prolidase N-terminal domain VPBB_RS14810 PF01321 Creatinase/Prolidase N-terminal domain VPBB_RS14815 PF04055 Radical SAM superfamily VPBB_RS14815 PF06968 Biotin and Thiamin Synthesis associated domain VPBB_RS14820 PF05690 Thiazole biosynthesis protein ThiG VPBB_RS14825 PF02597 ThiS family VPBB_RS14830 PF00899 ThiF family VPBB_RS14835 PF02581 Thiamine monophosphate synthase VPBB_RS14840 PF13667 ThiC-associated domain VPBB_RS14840 PF01964 Radical SAM ThiC family VPBB_RS14845 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VPBB_RS14895 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_RS14900 PF07369 Protein of unknown function (DUF1488) VPBB_RS14905 PF08501 Shikimate dehydrogenase substrate binding domain VPBB_RS14905 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VPBB_RS14905 PF01488 Shikimate / quinate 5-dehydrogenase VPBB_RS14910 PF01218 Coproporphyrinogen III oxidase VPBB_RS14915 PF01300 Telomere recombination VPBB_RS14920 PF00731 AIR carboxylase VPBB_RS14925 PF02222 ATP-grasp domain VPBB_RS14925 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VPBB_RS14930 PF01396 Topoisomerase DNA binding C4 zinc finger VPBB_RS14935 PF04361 Protein of unknown function (DUF494) VPBB_RS14940 PF02481 DNA recombination-mediator protein A VPBB_RS14940 PF17782 DprA winged helix domain VPBB_RS14950 PF01327 Polypeptide deformylase VPBB_RS14955 PF02911 Formyl transferase, C-terminal domain VPBB_RS14955 PF00551 Formyl transferase VPBB_RS14960 PF01029 NusB family VPBB_RS14960 PF01189 16S rRNA methyltransferase RsmB/F VPBB_RS14965 PF02080 TrkA-C domain VPBB_RS14965 PF02254 TrkA-N domain VPBB_RS14970 PF02386 Cation transport protein VPBB_RS14980 PF03006 Haemolysin-III related VPBB_RS14985 PF07070 SpoOM protein VPBB_RS14990 PF06288 Protein of unknown function (DUF1040) VPBB_RS14995 PF12801 4Fe-4S binding domain VPBB_RS14995 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VPBB_RS14995 PF13746 4Fe-4S dicluster domain VPBB_RS15000 PF01636 Phosphotransferase enzyme family VPBB_RS15005 PF01323 DSBA-like thioredoxin domain VPBB_RS15010 PF01553 Acyltransferase VPBB_RS15020 PF01078 Magnesium chelatase, subunit ChlI VPBB_RS15020 PF13335 Magnesium chelatase, subunit ChlI C-terminal VPBB_RS15065 PF01425 Amidase VPBB_RS15080 PF02899 Phage integrase, N-terminal SAM-like domain VPBB_RS15080 PF00589 Phage integrase family VPBB_RS15100 PF01078 Magnesium chelatase, subunit ChlI VPBB_RS15100 PF13335 Magnesium chelatase, subunit ChlI C-terminal VPBB_RS15105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VPBB_RS15105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VPBB_RS15105 PF00205 Thiamine pyrophosphate enzyme, central domain VPBB_RS15115 PF01063 Amino-transferase class IV VPBB_RS15120 PF00920 Dehydratase family VPBB_RS15125 PF00291 Pyridoxal-phosphate dependent enzyme VPBB_RS15125 PF00585 C-terminal regulatory domain of Threonine dehydratase VPBB_RS15130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS15130 PF03466 LysR substrate binding domain VPBB_RS15135 PF07690 Major Facilitator Superfamily VPBB_RS15140 PF00497 Bacterial extracellular solute-binding proteins, family 3 VPBB_RS15145 PF00528 Binding-protein-dependent transport system inner membrane component VPBB_RS15150 PF00132 Bacterial transferase hexapeptide (six repeats) VPBB_RS15150 PF12804 MobA-like NTP transferase domain VPBB_RS15155 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VPBB_RS15155 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VPBB_RS15160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPBB_RS15160 PF02874 ATP synthase alpha/beta family, beta-barrel domain VPBB_RS15165 PF00231 ATP synthase VPBB_RS15170 PF02874 ATP synthase alpha/beta family, beta-barrel domain VPBB_RS15170 PF00306 ATP synthase alpha/beta chain, C terminal domain VPBB_RS15170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VPBB_RS15175 PF00213 ATP synthase delta (OSCP) subunit VPBB_RS15180 PF00430 ATP synthase B/B' CF(0) VPBB_RS15185 PF00137 ATP synthase subunit C VPBB_RS15190 PF00119 ATP synthase A chain VPBB_RS15195 PF03899 ATP synthase I chain VPBB_RS15200 PF17762 HTH domain found in ParB protein VPBB_RS15200 PF02195 ParB-like nuclease domain VPBB_RS15205 PF13614 AAA domain VPBB_RS15210 PF02527 rRNA small subunit methyltransferase G VPBB_RS15215 PF01134 Glucose inhibited division protein A VPBB_RS15215 PF13932 GidA associated domain VPBB_RS15275 PF02463 RecF/RecN/SMC N terminal domain VPBB_RS15755 PF03109 ABC1 family VPBB_RS15895 PF03631 Virulence factor BrkB VPBB_RS15900 PF03631 Virulence factor BrkB VPBB_RS15945 PF01430 Hsp33 protein VPBB_RS15980 PF11612 Type II secretion system (T2SS), protein J VPBB_RS15980 PF07963 Prokaryotic N-terminal methylation motif VPBB_RS15990 PF03934 Type II secretion system (T2SS), protein K VPBB_RS16075 PF00270 DEAD/DEAH box helicase VPBB_RS16075 PF00271 Helicase conserved C-terminal domain VPBB_RS16075 PF17191 RecG wedge domain VPBB_RS16140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VPBB_RS16270 PF00535 Glycosyl transferase family 2 VPBB_RS16345 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VPBB_RS16435 PF13439 Glycosyltransferase Family 4 VPBB_RS16435 PF00534 Glycosyl transferases group 1 VPBB_RS16480 PF01238 Phosphomannose isomerase type I VPBB_RS16515 PF02719 Polysaccharide biosynthesis protein VPBB_RS16605 PF00297 Ribosomal protein L3 VPBB_RS16685 PF03880 DbpA RNA binding domain VPBB_RS16685 PF00270 DEAD/DEAH box helicase VPBB_RS16685 PF00271 Helicase conserved C-terminal domain VPBB_RS16725 PF02080 TrkA-C domain VPBB_RS16725 PF03600 Citrate transporter VPBB_RS16730 PF03600 Citrate transporter VPBB_RS16730 PF02080 TrkA-C domain VPBB_RS16790 PF01103 Surface antigen VPBB_RS16790 PF17243 POTRA domain TamA domain 1 VPBB_RS16790 PF07244 Surface antigen variable number repeat VPBB_RS16820 PF08245 Mur ligase middle domain VPBB_RS16820 PF01225 Mur ligase family, catalytic domain VPBB_RS16820 PF02875 Mur ligase family, glutamate ligase domain VPBB_RS17190 PF13401 AAA domain VPBB_RS17190 PF01471 Putative peptidoglycan binding domain VPBB_RS17220 PF01865 Protein of unknown function DUF47 VPBB_RS17260 PF03710 Glutamate-ammonia ligase adenylyltransferase VPBB_RS17260 PF08335 GlnD PII-uridylyltransferase VPBB_RS17360 PF00905 Penicillin binding protein transpeptidase domain VPBB_RS17360 PF03717 Penicillin-binding Protein dimerisation domain VPBB_RS17460 PF07992 Pyridine nucleotide-disulphide oxidoreductase VPBB_RS17460 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VPBB_RS17605 PF03883 Peroxide stress protein YaaA VPBB_RS17685 PF02976 DNA mismatch repair enzyme MutH VPBB_RS17705 PF01590 GAF domain VPBB_RS17705 PF05524 PEP-utilising enzyme, N-terminal VPBB_RS17705 PF02896 PEP-utilising enzyme, TIM barrel domain VPBB_RS17705 PF00391 PEP-utilising enzyme, mobile domain VPBB_RS17780 PF00133 tRNA synthetases class I (I, L, M and V) VPBB_RS17780 PF08264 Anticodon-binding domain of tRNA VPBB_RS17780 PF06827 Zinc finger found in FPG and IleRS VPBB_RS17830 PF00933 Glycosyl hydrolase family 3 N terminal domain VPBB_RS17870 PF14718 Soluble lytic murein transglycosylase L domain VPBB_RS17870 PF01464 Transglycosylase SLT domain VPBB_RS17955 PF16325 Peptidase family U32 C-terminal domain VPBB_RS17955 PF01136 Peptidase family U32 VPBB_RS17985 PF13089 Polyphosphate kinase N-terminal domain VPBB_RS17985 PF13090 Polyphosphate kinase C-terminal domain 2 VPBB_RS17985 PF02503 Polyphosphate kinase middle domain VPBB_RS17985 PF17941 Polyphosphate kinase C-terminal domain 1 VPBB_RS18160 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VPBB_RS18160 PF01926 50S ribosome-binding GTPase VPBB_RS18230 PF01235 Sodium:alanine symporter family VPBB_RS18300 PF02463 RecF/RecN/SMC N terminal domain VPBB_RS18485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VPBB_RS18485 PF03466 LysR substrate binding domain VPBB_RS18510 PF00990 Diguanylate cyclase, GGDEF domain VPBB_RS18560 PF00128 Alpha amylase, catalytic domain VPBB_RS18560 PF16657 Maltogenic Amylase, C-terminal domain VPBB_RS18750 PF00849 RNA pseudouridylate synthase VPBB_RS18750 PF01479 S4 domain VPBB_RS18770 PF03173 Putative carbohydrate binding domain VPBB_RS18770 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VPBB_RS18770 PF00728 Glycosyl hydrolase family 20, catalytic domain VPBB_RS18770 PF02838 Glycosyl hydrolase family 20, domain 2 VPBB_RS18790 PF00403 Heavy-metal-associated domain VPBB_RS18910 PF02119 Flagellar P-ring protein VPBB_RS18940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VPBB_RS18940 PF07196 Flagellin hook IN motif VPBB_RS18995 PF03573 outer membrane porin, OprD family VPBB_RS19155 PF02779 Transketolase, pyrimidine binding domain VPBB_RS19155 PF16870 2-oxoglutarate dehydrogenase C-terminal VPBB_RS19155 PF00676 Dehydrogenase E1 component VPBB_RS19155 PF16078 2-oxoglutarate dehydrogenase N-terminus VPBB_RS19185 PF01297 Zinc-uptake complex component A periplasmic VPBB_RS19500 PF02743 Cache domain VPBB_RS19500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS19500 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS19715 PF00403 Heavy-metal-associated domain VPBB_RS19770 PF00271 Helicase conserved C-terminal domain VPBB_RS19770 PF02559 CarD-like/TRCF domain VPBB_RS19770 PF00270 DEAD/DEAH box helicase VPBB_RS19770 PF03461 TRCF domain VPBB_RS19770 PF17757 UvrB interaction domain VPBB_RS19960 PF00849 RNA pseudouridylate synthase VPBB_RS19995 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VPBB_RS20015 PF01396 Topoisomerase DNA binding C4 zinc finger VPBB_RS20015 PF01751 Toprim domain VPBB_RS20015 PF08272 Topoisomerase I zinc-ribbon-like VPBB_RS20015 PF01131 DNA topoisomerase VPBB_RS20235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS20235 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS20235 PF09308 LuxQ, periplasmic VPBB_RS20235 PF00072 Response regulator receiver domain VPBB_RS20240 PF00072 Response regulator receiver domain VPBB_RS20240 PF09308 LuxQ, periplasmic VPBB_RS20240 PF00512 His Kinase A (phospho-acceptor) domain VPBB_RS20240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPBB_RS20775 PF00149 Calcineurin-like phosphoesterase VPBB_RS20775 PF02872 5'-nucleotidase, C-terminal domain VPBB_RS20870 PF13460 NAD(P)H-binding VPBB_RS20870 PF11066 Protein of unknown function (DUF2867) VPBB_RS21200 PF00221 Aromatic amino acid lyase VPBB_RS22050 PF04976 DMSO reductase anchor subunit (DmsC) VPBB_RS22350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VPBB_RS22350 PF00384 Molybdopterin oxidoreductase VPBB_RS22350 PF01568 Molydopterin dinucleotide binding domain VPBB_RS22440 PF13416 Bacterial extracellular solute-binding protein VPBB_RS22605 PF05088 Bacterial NAD-glutamate dehydrogenase VPBB_RS22645 PF00595 PDZ domain VPBB_RS22645 PF17804 Tail specific protease N-terminal domain VPBB_RS22645 PF03572 Peptidase family S41 VPBB_RS22645 PF11818 C-terminal domain of tail specific protease (DUF3340) VPBB_RS22830 PF13193 AMP-binding enzyme C-terminal domain VPBB_RS22830 PF00501 AMP-binding enzyme VPBB_RS22830 PF16177 Acetyl-coenzyme A synthetase N-terminus VPBB_RS23030 PF00263 Bacterial type II and III secretion system protein VPBB_RS23030 PF03958 Bacterial type II/III secretion system short domain