locus-tag class description VP0001 PF00258 Flavodoxin VP0002 PF12631 MnmE helical domain VP0002 PF10396 GTP-binding protein TrmE N-terminus VP0002 PF01926 50S ribosome-binding GTPase VP0003 PF14849 YidC periplasmic domain VP0003 PF02096 60Kd inner membrane protein VP0004 PF00825 Ribonuclease P VP0005 PF00468 Ribosomal protein L34 VP0006 PF00005 ABC transporter VP0007 PF00528 Binding-protein-dependent transport system inner membrane component VP0008 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP0011 PF00308 Bacterial dnaA protein VP0011 PF08299 Bacterial dnaA protein helix-turn-helix VP0011 PF11638 DnaA N-terminal domain VP0012 PF02768 DNA polymerase III beta subunit, C-terminal domain VP0012 PF02767 DNA polymerase III beta subunit, central domain VP0012 PF00712 DNA polymerase III beta subunit, N-terminal domain VP0013 PF02463 RecF/RecN/SMC N terminal domain VP0014 PF00204 DNA gyrase B VP0014 PF18053 DNA gyrase B subunit insert domain VP0014 PF00986 DNA gyrase B subunit, carboxyl terminus VP0014 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP0014 PF01751 Toprim domain VP0018 PF00011 Hsp20/alpha crystallin family VP0019 PF00155 Aminotransferase class I and II VP0020 PF00128 Alpha amylase, catalytic domain VP0021 PF02092 Glycyl-tRNA synthetase beta subunit VP0021 PF05746 DALR anticodon binding domain VP0022 PF02091 Glycyl-tRNA synthetase alpha subunit VP0023 PF01169 Uncharacterized protein family UPF0016 VP0025 PF01206 Sulfurtransferase TusA VP0027 PF03466 LysR substrate binding domain VP0027 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP0028 PF00107 Zinc-binding dehydrogenase VP0028 PF08240 Alcohol dehydrogenase GroES-like domain VP0029 PF02803 Thiolase, C-terminal domain VP0029 PF00108 Thiolase, N-terminal domain VP0030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VP0030 PF00378 Enoyl-CoA hydratase/isomerase VP0030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VP0031 PF01205 Uncharacterized protein family UPF0029 VP0031 PF09186 Domain of unknown function (DUF1949) VP0032 PF02386 Cation transport protein VP0033 PF12724 Flavodoxin domain VP0034 PF03466 LysR substrate binding domain VP0034 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP0035 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VP0035 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VP0036 PF04380 Membrane fusogenic activity VP0038 PF00873 AcrB/AcrD/AcrF family VP0039 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP0040 PF00440 Bacterial regulatory proteins, tetR family VP0040 PF16295 Tetracyclin repressor-like, C-terminal domain VP0041 PF13361 UvrD-like helicase C-terminal domain VP0041 PF00580 UvrD/REP helicase N-terminal domain VP0042 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VP0044 PF13419 Haloacid dehalogenase-like hydrolase VP0047 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP0047 PF00005 ABC transporter VP0048 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP0049 PF00528 Binding-protein-dependent transport system inner membrane component VP0050 PF00528 Binding-protein-dependent transport system inner membrane component VP0050 PF12911 N-terminal TM domain of oligopeptide transport permease C VP0057 PF00069 Protein kinase domain VP0058 PF00356 Bacterial regulatory proteins, lacI family VP0058 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VP0059 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP0059 PF03466 LysR substrate binding domain VP0060 PF00893 Small Multidrug Resistance protein VP0061 PF00893 Small Multidrug Resistance protein VP0062 PF00920 Dehydratase family VP0063 PF01202 Shikimate kinase VP0064 PF02447 GntP family permease VP0065 PF01081 KDPG and KHG aldolase VP0066 PF01048 Phosphorylase superfamily VP0067 PF03466 LysR substrate binding domain VP0067 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP0068 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP0068 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VP0069 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VP0070 PF01432 Peptidase family M3 VP0071 PF00563 EAL domain VP0071 PF08448 PAS fold VP0071 PF00990 Diguanylate cyclase, GGDEF domain VP0072 PF01037 Lrp/AsnC ligand binding domain VP0073 PF04445 Putative SAM-dependent methyltransferase VP0075 PF00892 EamA-like transporter family VP0076 PF00582 Universal stress protein family VP0077 PF00210 Ferritin-like domain VP0078 PF10625 Universal stress protein B (UspB) VP0080 PF00158 Sigma-54 interaction domain VP0080 PF02954 Bacterial regulatory protein, Fis family VP0080 PF01590 GAF domain VP0085 PF00781 Diacylglycerol kinase catalytic domain VP0091 PF01594 AI-2E family transporter VP0092 PF03707 Bacterial signalling protein N terminal repeat VP0092 PF00563 EAL domain VP0092 PF00990 Diguanylate cyclase, GGDEF domain VP0094 PF02646 RmuC family VP0095 PF01209 ubiE/COQ5 methyltransferase family VP0096 PF02036 SCP-2 sterol transfer family VP0097 PF03109 ABC1 family VP0098 PF02416 mttA/Hcf106 family VP0099 PF02416 mttA/Hcf106 family VP0100 PF00902 Sec-independent protein translocase protein (TatC) VP0103 PF01026 TatD related DNase VP0104 PF00490 Delta-aminolevulinic acid dehydratase VP0107 PF01612 3'-5' exonuclease VP0107 PF00476 DNA polymerase family A VP0107 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VP0107 PF01367 5'-3' exonuclease, C-terminal SAM fold VP0109 PF01926 50S ribosome-binding GTPase VP0110 PF00034 Cytochrome c VP0113 PF04220 Der GTPase activator (YihI) VP0114 PF10675 Protein of unknown function (DUF2489) VP0115 PF04055 Radical SAM superfamily VP0115 PF06969 HemN C-terminal domain VP0116 PF00962 Adenosine/AMP deaminase VP0117 PF03707 Bacterial signalling protein N terminal repeat VP0117 PF00990 Diguanylate cyclase, GGDEF domain VP0117 PF00563 EAL domain VP0118 PF00158 Sigma-54 interaction domain VP0118 PF00072 Response regulator receiver domain VP0118 PF02954 Bacterial regulatory protein, Fis family VP0119 PF00512 His Kinase A (phospho-acceptor) domain VP0119 PF00989 PAS fold VP0119 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP0121 PF00120 Glutamine synthetase, catalytic domain VP0121 PF03951 Glutamine synthetase, beta-Grasp domain VP0122 PF00009 Elongation factor Tu GTP binding domain VP0122 PF00679 Elongation factor G C-terminus VP0122 PF03144 Elongation factor Tu domain 2 VP0125 PF03631 Virulence factor BrkB VP0126 PF02580 D-Tyr-tRNA(Tyr) deacylase VP0127 PF00583 Acetyltransferase (GNAT) family VP0127 PF09500 Putative thioesterase (yiiD_Cterm) VP0129 PF01293 Phosphoenolpyruvate carboxykinase VP0130 PF01430 Hsp33 protein VP0131 PF01479 S4 domain VP0132 PF11356 Type II secretion system protein C VP0133 PF03958 Bacterial type II/III secretion system short domain VP0133 PF00263 Bacterial type II and III secretion system protein VP0134 PF00437 Type II/IV secretion system protein VP0135 PF00482 Type II secretion system (T2SS), protein F VP0136 PF08334 Type II secretion system (T2SS), protein G VP0136 PF07963 Prokaryotic N-terminal methylation motif VP0137 PF12019 Type II transport protein GspH VP0138 PF07963 Prokaryotic N-terminal methylation motif VP0138 PF02501 Type II secretion system (T2SS), protein I VP0139 PF07963 Prokaryotic N-terminal methylation motif VP0139 PF11612 Type II secretion system (T2SS), protein J VP0140 PF03934 Type II secretion system (T2SS), protein K VP0141 PF12693 GspL periplasmic domain VP0141 PF05134 Type II secretion system (T2SS), protein L VP0142 PF04612 Type II secretion system (T2SS), protein M VP0143 PF01203 Type II secretion system (T2SS), protein N VP0144 PF00459 Inositol monophosphatase family VP0145 PF00293 NUDIX domain VP0146 PF01106 NifU-like domain VP0146 PF01521 Iron-sulphur cluster biosynthesis VP0147 PF00156 Phosphoribosyl transferase domain VP0148 PF00561 alpha/beta hydrolase fold VP0150 PF09371 Tex-like protein N-terminal domain VP0150 PF16921 Tex protein YqgF-like domain VP0150 PF17674 HHH domain VP0150 PF00575 S1 RNA binding domain VP0152 PF01272 Transcription elongation factor, GreA/GreB, C-term VP0152 PF03449 Transcription elongation factor, N-terminal VP0154 PF00072 Response regulator receiver domain VP0154 PF00486 Transcriptional regulatory protein, C terminal VP0155 PF00512 His Kinase A (phospho-acceptor) domain VP0155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP0155 PF00672 HAMP domain VP0156 PF00860 Permease family VP0157 PF17191 RecG wedge domain VP0157 PF00271 Helicase conserved C-terminal domain VP0157 PF00270 DEAD/DEAH box helicase VP0158 PF12105 SpoU, rRNA methylase, C-terminal VP0158 PF00588 SpoU rRNA Methylase family VP0159 PF02824 TGS domain VP0159 PF13291 ACT domain VP0159 PF04607 Region found in RelA / SpoT proteins VP0160 PF01192 RNA polymerase Rpb6 VP0161 PF00625 Guanylate kinase VP0164 PF02472 Biopolymer transport protein ExbD/TolR VP0165 PF01618 MotA/TolQ/ExbB proton channel family VP0168 PF07715 TonB-dependent Receptor Plug Domain VP0168 PF00593 TonB dependent receptor VP0170 PF00528 Binding-protein-dependent transport system inner membrane component VP0171 PF00528 Binding-protein-dependent transport system inner membrane component VP0171 PF12911 N-terminal TM domain of oligopeptide transport permease C VP0172 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP0173 PF00005 ABC transporter VP0173 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP0174 PF00005 ABC transporter VP0174 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP0176 PF03755 YicC-like family, N-terminal region VP0176 PF08340 Domain of unknown function (DUF1732) VP0177 PF03725 3' exoribonuclease family, domain 2 VP0177 PF01138 3' exoribonuclease family, domain 1 VP0178 PF00156 Phosphoribosyl transferase domain VP0179 PF03279 Bacterial lipid A biosynthesis acyltransferase VP0180 PF00440 Bacterial regulatory proteins, tetR family VP0181 PF02441 Flavoprotein VP0181 PF04127 DNA / pantothenate metabolism flavoprotein VP0183 PF17200 Single Cache domain 2 VP0183 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP0183 PF00672 HAMP domain VP0184 PF04002 RadC-like JAB domain VP0185 PF00830 Ribosomal L28 family VP0186 PF00471 Ribosomal protein L33 VP0187 PF00884 Sulfatase VP0189 PF06827 Zinc finger found in FPG and IleRS VP0189 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VP0189 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VP0190 PF01467 Cytidylyltransferase-like VP0191 PF05686 Glycosyl transferase family 90 VP0192 PF00535 Glycosyl transferase family 2 VP0193 PF00535 Glycosyl transferase family 2 VP0194 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VP0195 PF01219 Prokaryotic diacylglycerol kinase VP0197 PF02719 Polysaccharide biosynthesis protein VP0198 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VP0199 PF02350 UDP-N-acetylglucosamine 2-epimerase VP0200 PF08666 SAF domain VP0200 PF03102 NeuB family VP0202 PF00483 Nucleotidyl transferase VP0203 PF13472 GDSL-like Lipase/Acylhydrolase family VP0203 PF02348 Cytidylyltransferase VP0205 PF00202 Aminotransferase class-III VP0206 PF00795 Carbon-nitrogen hydrolase VP0211 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VP0212 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VP0213 PF03279 Bacterial lipid A biosynthesis acyltransferase VP0214 PF01370 NAD dependent epimerase/dehydratase family VP0215 PF06082 Exopolysaccharide biosynthesis protein YbjH VP0222 PF16363 GDP-mannose 4,6 dehydratase VP0223 PF00483 Nucleotidyl transferase VP0229 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VP0231 PF02397 Bacterial sugar transferase VP0234 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VP0235 PF02719 Polysaccharide biosynthesis protein VP0236 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VP0236 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VP0236 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VP0237 PF00483 Nucleotidyl transferase VP0238 PF00753 Metallo-beta-lactamase superfamily VP0238 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VP0238 PF10996 Beta-Casp domain VP0239 PF00121 Triosephosphate isomerase VP0243 PF00455 DeoR C terminal sensor domain VP0243 PF08220 DeoR-like helix-turn-helix domain VP0244 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VP0246 PF06005 Cell division protein ZapB VP0247 PF03737 Aldolase/RraA VP0248 PF01040 UbiA prenyltransferase family VP0249 PF07724 AAA domain (Cdc48 subfamily) VP0249 PF00004 ATPase family associated with various cellular activities (AAA) VP0250 PF00227 Proteasome subunit VP0252 PF00356 Bacterial regulatory proteins, lacI family VP0253 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VP0253 PF18074 Primosomal protein N C-terminal domain VP0253 PF17764 3′ DNA-binding domain (3′BD) VP0253 PF00271 Helicase conserved C-terminal domain VP0253 PF00270 DEAD/DEAH box helicase VP0255 PF01197 Ribosomal protein L31 VP0256 PF00338 Ribosomal protein S10p/S20e VP0257 PF00297 Ribosomal protein L3 VP0258 PF00573 Ribosomal protein L4/L1 family VP0259 PF00276 Ribosomal protein L23 VP0260 PF03947 Ribosomal Proteins L2, C-terminal domain VP0260 PF00181 Ribosomal Proteins L2, RNA binding domain VP0261 PF00203 Ribosomal protein S19 VP0262 PF00237 Ribosomal protein L22p/L17e VP0263 PF00189 Ribosomal protein S3, C-terminal domain VP0263 PF07650 KH domain VP0264 PF00252 Ribosomal protein L16p/L10e VP0265 PF00831 Ribosomal L29 protein VP0266 PF00366 Ribosomal protein S17 VP0267 PF00238 Ribosomal protein L14p/L23e VP0268 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VP0268 PF00467 KOW motif VP0269 PF00673 ribosomal L5P family C-terminus VP0269 PF00281 Ribosomal protein L5 VP0270 PF00253 Ribosomal protein S14p/S29e VP0271 PF00410 Ribosomal protein S8 VP0272 PF00347 Ribosomal protein L6 VP0273 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VP0274 PF00333 Ribosomal protein S5, N-terminal domain VP0274 PF03719 Ribosomal protein S5, C-terminal domain VP0275 PF00327 Ribosomal protein L30p/L7e VP0276 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VP0277 PF00344 SecY translocase VP0278 PF00444 Ribosomal protein L36 VP0279 PF00416 Ribosomal protein S13/S18 VP0280 PF00411 Ribosomal protein S11 VP0281 PF01479 S4 domain VP0281 PF00163 Ribosomal protein S4/S9 N-terminal domain VP0282 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VP0282 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VP0282 PF01000 RNA polymerase Rpb3/RpoA insert domain VP0283 PF01196 Ribosomal protein L17 VP0285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VP0285 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VP0287 PF13673 Acetyltransferase (GNAT) domain VP0288 PF00271 Helicase conserved C-terminal domain VP0288 PF03880 DbpA RNA binding domain VP0288 PF00270 DEAD/DEAH box helicase VP0290 PF02872 5'-nucleotidase, C-terminal domain VP0290 PF00149 Calcineurin-like phosphoesterase VP0291 PF14824 Sirohaem biosynthesis protein central VP0291 PF10414 Sirohaem synthase dimerisation region VP0291 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VP0292 PF01507 Phosphoadenosine phosphosulfate reductase family VP0293 PF00009 Elongation factor Tu GTP binding domain VP0295 PF03600 Citrate transporter VP0295 PF02080 TrkA-C domain VP0301 PF00005 ABC transporter VP0303 PF10795 Protein of unknown function (DUF2607) VP0304 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VP0305 PF06526 Protein of unknown function (DUF1107) VP0306 PF01625 Peptide methionine sulfoxide reductase VP0307 PF01103 Surface antigen VP0307 PF17243 POTRA domain TamA domain 1 VP0308 PF04357 TamB, inner membrane protein subunit of TAM complex VP0309 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VP0311 PF00719 Inorganic pyrophosphatase VP0313 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VP0314 PF01225 Mur ligase family, catalytic domain VP0314 PF02875 Mur ligase family, glutamate ligase domain VP0314 PF08245 Mur ligase middle domain VP0315 PF02441 Flavoprotein VP0317 PF00528 Binding-protein-dependent transport system inner membrane component VP0318 PF00005 ABC transporter VP0323 PF16868 NMT1-like family VP0324 PF01316 Arginine repressor, DNA binding domain VP0324 PF02863 Arginine repressor, C-terminal domain VP0325 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VP0325 PF00056 lactate/malate dehydrogenase, NAD binding domain VP0327 PF00348 Polyprenyl synthetase VP0328 PF00829 Ribosomal prokaryotic L21 protein VP0329 PF01016 Ribosomal L27 protein VP0330 PF01926 50S ribosome-binding GTPase VP0330 PF01018 GTP1/OBG VP0331 PF06738 Putative threonine/serine exporter VP0332 PF12821 Threonine/Serine exporter, ThrE VP0333 PF00186 Dihydrofolate reductase VP0334 PF00149 Calcineurin-like phosphoesterase VP0335 PF04379 ApaG domain VP0336 PF00398 Ribosomal RNA adenine dimethylase VP0337 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VP0338 PF09312 SurA N-terminal domain VP0339 PF03968 OstA-like protein VP0339 PF04453 LPS transport system D VP0340 PF05099 Tellurite resistance protein TerB VP0340 PF00226 DnaJ domain VP0342 PF00694 Aconitase C-terminal domain VP0343 PF00330 Aconitase family (aconitate hydratase) VP0344 PF00180 Isocitrate/isopropylmalate dehydrogenase VP0346 PF08502 LeuA allosteric (dimerisation) domain VP0346 PF00682 HMGL-like VP0348 PF01569 PAP2 superfamily VP0350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP0350 PF03466 LysR substrate binding domain VP0351 PF00501 AMP-binding enzyme VP0352 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VP0352 PF00205 Thiamine pyrophosphate enzyme, central domain VP0352 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VP0353 PF10369 Small subunit of acetolactate synthase VP0354 PF00990 Diguanylate cyclase, GGDEF domain VP0356 PF02887 Pyruvate kinase, alpha/beta domain VP0356 PF00224 Pyruvate kinase, barrel domain VP0358 PF08220 DeoR-like helix-turn-helix domain VP0358 PF00455 DeoR C terminal sensor domain VP0359 PF01380 SIS domain VP0361 PF00072 Response regulator receiver domain VP0361 PF00486 Transcriptional regulatory protein, C terminal VP0362 PF00672 HAMP domain VP0362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP0362 PF00512 His Kinase A (phospho-acceptor) domain VP0363 PF00465 Iron-containing alcohol dehydrogenase VP0364 PF02733 Dak1 domain VP0365 PF02734 DAK2 domain VP0366 PF00391 PEP-utilising enzyme, mobile domain VP0366 PF05524 PEP-utilising enzyme, N-terminal VP0366 PF02896 PEP-utilising enzyme, TIM barrel domain VP0367 PF00158 Sigma-54 interaction domain VP0367 PF02954 Bacterial regulatory protein, Fis family VP0367 PF00989 PAS fold VP0368 PF05068 Mannitol repressor VP0369 PF08125 Mannitol dehydrogenase C-terminal domain VP0369 PF01232 Mannitol dehydrogenase Rossmann domain VP0370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VP0370 PF02378 Phosphotransferase system, EIIC VP0370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VP0377 PF12833 Helix-turn-helix domain VP0379 PF03180 NLPA lipoprotein VP0387 PF01420 Type I restriction modification DNA specificity domain VP0388 PF12161 HsdM N-terminal domain VP0388 PF02384 N-6 DNA Methylase VP0394 PF01555 DNA methylase VP0395 PF04851 Type III restriction enzyme, res subunit VP0395 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) VP0395 PF00271 Helicase conserved C-terminal domain VP0395 PF08463 EcoEI R protein C-terminal VP0402 PF13657 HipA N-terminal domain VP0402 PF07804 HipA-like C-terminal domain VP0404 PF03979 Sigma-70 factor, region 1.1 VP0404 PF04546 Sigma-70, non-essential region VP0404 PF04545 Sigma-70, region 4 VP0404 PF00140 Sigma-70 factor, region 1.2 VP0404 PF04539 Sigma-70 region 3 VP0404 PF04542 Sigma-70 region 2 VP0405 PF08275 DNA primase catalytic core, N-terminal domain VP0405 PF10410 DnaB-helicase binding domain of primase VP0405 PF01807 CHC2 zinc finger VP0405 PF08278 DNA primase DnaG DnaB-binding VP0406 PF09424 Yqey-like protein VP0407 PF01165 Ribosomal protein S21 VP0408 PF00814 Glycoprotease family VP0409 PF12697 Alpha/beta hydrolase family VP0410 PF02660 Glycerol-3-phosphate acyltransferase VP0411 PF02152 Dihydroneopterin aldolase VP0412 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VP0413 PF02673 Bacitracin resistance protein BacA VP0414 PF01966 HD domain VP0414 PF01743 Poly A polymerase head domain VP0414 PF12627 Probable RNA and SrmB- binding site of polymerase A VP0415 PF13401 AAA domain VP0415 PF01471 Putative peptidoglycan binding domain VP0417 PF08239 Bacterial SH3 domain VP0418 PF01384 Phosphate transporter family VP0419 PF01865 Protein of unknown function DUF47 VP0420 PF01928 CYTH domain VP0421 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP0421 PF00672 HAMP domain VP0423 PF03710 Glutamate-ammonia ligase adenylyltransferase VP0423 PF08335 GlnD PII-uridylyltransferase VP0424 PF00294 pfkB family carbohydrate kinase VP0424 PF01467 Cytidylyltransferase-like VP0425 PF02321 Outer membrane efflux protein VP0426 PF00293 NUDIX domain VP0427 PF06853 Protein of unknown function (DUF1249) VP0428 PF00149 Calcineurin-like phosphoesterase VP0429 PF05728 Uncharacterised protein family (UPF0227) VP0430 PF00204 DNA gyrase B VP0430 PF00986 DNA gyrase B subunit, carboxyl terminus VP0430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP0430 PF01751 Toprim domain VP0431 PF03989 DNA gyrase C-terminal domain, beta-propeller VP0431 PF00521 DNA gyrase/topoisomerase IV, subunit A VP0432 PF13180 PDZ domain VP0433 PF00595 PDZ domain VP0434 PF06295 Protein of unknown function (DUF1043) VP0436 PF03969 AFG1-like ATPase VP0438 PF00572 Ribosomal protein L13 VP0439 PF00380 Ribosomal protein S9/S16 VP0441 PF00355 Rieske [2Fe-2S] domain VP0441 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VP0442 PF00032 Cytochrome b(C-terminal)/b6/petD VP0442 PF00033 Cytochrome b/b6/petB VP0443 PF02167 Cytochrome C1 family VP0444 PF00043 Glutathione S-transferase, C-terminal domain VP0444 PF02798 Glutathione S-transferase, N-terminal domain VP0445 PF04386 Stringent starvation protein B VP0446 PF04972 BON domain VP0447 PF13580 SIS domain VP0448 PF02021 Uncharacterised protein family UPF0102 VP0449 PF04348 LppC putative lipoprotein VP0450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VP0452 PF01795 MraW methylase family VP0453 PF04999 Cell division protein FtsL VP0454 PF03717 Penicillin-binding Protein dimerisation domain VP0454 PF00905 Penicillin binding protein transpeptidase domain VP0455 PF01225 Mur ligase family, catalytic domain VP0455 PF02875 Mur ligase family, glutamate ligase domain VP0455 PF08245 Mur ligase middle domain VP0456 PF08245 Mur ligase middle domain VP0456 PF01225 Mur ligase family, catalytic domain VP0456 PF02875 Mur ligase family, glutamate ligase domain VP0457 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VP0457 PF00953 Glycosyl transferase family 4 VP0458 PF08245 Mur ligase middle domain VP0458 PF02875 Mur ligase family, glutamate ligase domain VP0459 PF01098 Cell cycle protein VP0460 PF03033 Glycosyltransferase family 28 N-terminal domain VP0460 PF04101 Glycosyltransferase family 28 C-terminal domain VP0461 PF01225 Mur ligase family, catalytic domain VP0461 PF08245 Mur ligase middle domain VP0461 PF02875 Mur ligase family, glutamate ligase domain VP0462 PF03799 Cell division protein FtsQ VP0462 PF08478 POTRA domain, FtsQ-type VP0463 PF02491 SHS2 domain inserted in FTSA VP0464 PF00091 Tubulin/FtsZ family, GTPase domain VP0464 PF12327 FtsZ family, C-terminal domain VP0465 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VP0467 PF02810 SEC-C motif VP0467 PF07517 SecA DEAD-like domain VP0467 PF01043 SecA preprotein cross-linking domain VP0467 PF07516 SecA Wing and Scaffold domain VP0468 PF00293 NUDIX domain VP0469 PF05173 Dihydrodipicolinate reductase, C-terminus VP0469 PF01113 Dihydrodipicolinate reductase, N-terminus VP0470 PF00117 Glutamine amidotransferase class-I VP0470 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VP0471 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VP0471 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VP0471 PF02142 MGS-like domain VP0474 PF01925 Sulfite exporter TauE/SafE VP0475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP0475 PF03466 LysR substrate binding domain VP0476 PF03458 UPF0126 domain VP0477 PF01497 Periplasmic binding protein VP0478 PF03186 CobD/Cbib protein VP0478 PF17113 Regulatory signalling modulator protein AmpE VP0479 PF01048 Phosphorylase superfamily VP0481 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VP0481 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP0482 PF01645 Conserved region in glutamate synthase VP0482 PF01493 GXGXG motif VP0482 PF00310 Glutamine amidotransferases class-II VP0482 PF04898 Glutamate synthase central domain VP0483 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VP0483 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP0484 PF01645 Conserved region in glutamate synthase VP0484 PF01493 GXGXG motif VP0484 PF04898 Glutamate synthase central domain VP0484 PF00310 Glutamine amidotransferases class-II VP0485 PF04055 Radical SAM superfamily VP0485 PF16199 Radical_SAM C-terminal domain VP0486 PF01590 GAF domain VP0486 PF00360 Phytochrome region VP0486 PF00990 Diguanylate cyclase, GGDEF domain VP0486 PF00563 EAL domain VP0487 PF00989 PAS fold VP0487 PF18415 Histidine kinase receptor ArcB trans-membrane domain VP0487 PF00072 Response regulator receiver domain VP0487 PF00512 His Kinase A (phospho-acceptor) domain VP0487 PF01627 Hpt domain VP0487 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP0489 PF00486 Transcriptional regulatory protein, C terminal VP0489 PF00072 Response regulator receiver domain VP0492 PF03737 Aldolase/RraA VP0494 PF00742 Homoserine dehydrogenase VP0494 PF03447 Homoserine dehydrogenase, NAD binding domain VP0494 PF13840 ACT domain VP0494 PF01842 ACT domain VP0494 PF00696 Amino acid kinase family VP0495 PF08544 GHMP kinases C terminal VP0495 PF00288 GHMP kinases N terminal domain VP0496 PF00291 Pyridoxal-phosphate dependent enzyme VP0496 PF14821 Threonine synthase N terminus VP0497 PF01228 Glycine radical VP0498 PF01261 Xylose isomerase-like TIM barrel VP0500 PF03167 Uracil DNA glycosylase superfamily VP0503 PF01235 Sodium:alanine symporter family VP0504 PF03883 Peroxide stress protein YaaA VP0505 PF00271 Helicase conserved C-terminal domain VP0505 PF00270 DEAD/DEAH box helicase VP0506 PF05175 Methyltransferase small domain VP0507 PF05525 Branched-chain amino acid transport protein VP0508 PF00258 Flavodoxin VP0509 PF02899 Phage integrase, N-terminal SAM-like domain VP0509 PF00589 Phage integrase family VP0510 PF10411 Disulfide bond isomerase protein N-terminus VP0510 PF13098 Thioredoxin-like domain VP0511 PF01368 DHH family VP0511 PF02272 DHHA1 domain VP0511 PF17768 RecJ OB domain VP0512 PF00472 RF-1 domain VP0512 PF03462 PCRF domain VP0513 PF01336 OB-fold nucleic acid binding domain VP0513 PF00152 tRNA synthetases class II (D, K and N) VP0514 PF00072 Response regulator receiver domain VP0514 PF02954 Bacterial regulatory protein, Fis family VP0514 PF00158 Sigma-54 interaction domain VP0516 PF00248 Aldo/keto reductase family VP0518 PF02976 DNA mismatch repair enzyme MutH VP0520 PF00293 NUDIX domain VP0521 PF01590 GAF domain VP0521 PF05524 PEP-utilising enzyme, N-terminal VP0521 PF02896 PEP-utilising enzyme, TIM barrel domain VP0521 PF00391 PEP-utilising enzyme, mobile domain VP0522 PF01925 Sulfite exporter TauE/SafE VP0523 PF01790 Prolipoprotein diacylglyceryl transferase VP0524 PF00303 Thymidylate synthase VP0526 PF02690 Na+/Pi-cotransporter VP0527 PF03466 LysR substrate binding domain VP0527 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP0529 PF01022 Bacterial regulatory protein, arsR family VP0531 PF01649 Ribosomal protein S20 VP0532 PF03023 Lipid II flippase MurJ VP0533 PF01687 Riboflavin kinase VP0533 PF06574 FAD synthetase VP0534 PF00133 tRNA synthetases class I (I, L, M and V) VP0534 PF08264 Anticodon-binding domain of tRNA VP0534 PF06827 Zinc finger found in FPG and IleRS VP0535 PF01252 Signal peptidase (SPase) II VP0536 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VP0537 PF02401 LytB protein VP0538 PF04397 LytTr DNA-binding domain VP0538 PF00072 Response regulator receiver domain VP0539 PF07694 5TMR of 5TMR-LYT VP0539 PF06580 Histidine kinase VP0540 PF02554 Carbon starvation protein CstA VP0543 PF13580 SIS domain VP0544 PF03702 Anhydro-N-acetylmuramic acid kinase VP0545 PF00933 Glycosyl hydrolase family 3 N terminal domain VP0546 PF00793 DAHP synthetase I family VP0547 PF01817 Chorismate mutase type II VP0547 PF02153 Prephenate dehydrogenase VP0548 PF01551 Peptidase family M23 VP0548 PF04225 Opacity-associated protein A LysM-like domain VP0549 PF07238 PilZ domain VP0551 PF00005 ABC transporter VP0551 PF12848 ABC transporter VP0552 PF14718 Soluble lytic murein transglycosylase L domain VP0552 PF01464 Transglycosylase SLT domain VP0553 PF01371 Trp repressor protein VP0554 PF01931 Protein of unknown function DUF84 VP0555 PF00800 Prephenate dehydratase VP0555 PF01817 Chorismate mutase type II VP0556 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VP0557 PF01464 Transglycosylase SLT domain VP0557 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP0558 PF13525 Outer membrane lipoprotein VP0559 PF01479 S4 domain VP0559 PF00849 RNA pseudouridylate synthase VP0560 PF02578 Multi-copper polyphenol oxidoreductase laccase VP0561 PF10431 C-terminal, D2-small domain, of ClpB protein VP0561 PF02861 Clp amino terminal domain, pathogenicity island component VP0561 PF17871 AAA lid domain VP0561 PF07724 AAA domain (Cdc48 subfamily) VP0561 PF00004 ATPase family associated with various cellular activities (AAA) VP0564 PF03411 Penicillin-insensitive murein endopeptidase VP0566 PF00037 4Fe-4S binding domain VP0567 PF16325 Peptidase family U32 C-terminal domain VP0567 PF01136 Peptidase family U32 VP0568 PF04381 Putative exonuclease, RdgC VP0569 PF00072 Response regulator receiver domain VP0569 PF00486 Transcriptional regulatory protein, C terminal VP0570 PF11808 Phosphate regulon sensor protein PhoR VP0570 PF00512 His Kinase A (phospho-acceptor) domain VP0570 PF00989 PAS fold VP0570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP0571 PF12849 PBP superfamily domain VP0572 PF02541 Ppx/GppA phosphatase family VP0573 PF02503 Polyphosphate kinase middle domain VP0573 PF13089 Polyphosphate kinase N-terminal domain VP0573 PF17941 Polyphosphate kinase C-terminal domain 1 VP0573 PF13090 Polyphosphate kinase C-terminal domain 2 VP0574 PF00528 Binding-protein-dependent transport system inner membrane component VP0575 PF00528 Binding-protein-dependent transport system inner membrane component VP0576 PF00005 ABC transporter VP0577 PF01895 PhoU domain VP0578 PF03976 Polyphosphate kinase 2 (PPK2) VP0579 PF03932 CutC family VP0580 PF10417 C-terminal domain of 1-Cys peroxiredoxin VP0580 PF00578 AhpC/TSA family VP0581 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP0581 PF03466 LysR substrate binding domain VP0583 PF01274 Malate synthase VP0584 PF00463 Isocitrate lyase family VP0585 PF00571 CBS domain VP0587 PF02547 Queuosine biosynthesis protein VP0588 PF01702 Queuine tRNA-ribosyltransferase VP0589 PF02699 Preprotein translocase subunit VP0590 PF07549 SecD/SecF GG Motif VP0590 PF13721 SecD export protein N-terminal TM region VP0590 PF02355 Protein export membrane protein VP0591 PF07549 SecD/SecF GG Motif VP0591 PF02355 Protein export membrane protein VP0593 PF00459 Inositol monophosphatase family VP0594 PF00588 SpoU rRNA Methylase family VP0595 PF02082 Transcriptional regulator VP0596 PF00266 Aminotransferase class-V VP0597 PF01592 NifU-like N terminal domain VP0598 PF01521 Iron-sulphur cluster biosynthesis VP0599 PF07743 HSCB C-terminal oligomerisation domain VP0599 PF00226 DnaJ domain VP0600 PF00012 Hsp70 protein VP0601 PF00111 2Fe-2S iron-sulfur cluster binding domain VP0602 PF04384 Iron-sulphur cluster assembly VP0603 PF12404 Peptidase VP0603 PF00883 Cytosol aminopeptidase family, catalytic domain VP0604 PF00334 Nucleoside diphosphate kinase VP0605 PF04055 Radical SAM superfamily VP0607 PF13464 Domain of unknown function (DUF4115) VP0608 PF04551 GcpE protein VP0609 PF03129 Anticodon binding domain VP0609 PF13393 Histidyl-tRNA synthetase VP0610 PF09976 Tetratricopeptide repeat-like domain VP0611 PF13360 PQQ-like domain VP0612 PF01926 50S ribosome-binding GTPase VP0612 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VP0615 PF02601 Exonuclease VII, large subunit VP0615 PF13742 OB-fold nucleic acid binding domain VP0616 PF00478 IMP dehydrogenase / GMP reductase domain VP0616 PF00571 CBS domain VP0617 PF02540 NAD synthase VP0617 PF00958 GMP synthase C terminal domain VP0617 PF00117 Glutamine amidotransferase class-I VP0618 PF03553 Na+/H+ antiporter family VP0619 PF00704 Glycosyl hydrolases family 18 VP0619 PF06483 Chitinase C VP0620 PF01184 GPR1/FUN34/yaaH family VP0622 PF01235 Sodium:alanine symporter family VP0623 PF01266 FAD dependent oxidoreductase VP0628 PF07969 Amidohydrolase family VP0629 PF01053 Cys/Met metabolism PLP-dependent enzyme VP0630 PF00202 Aminotransferase class-III VP0634 PF00795 Carbon-nitrogen hydrolase VP0634 PF00583 Acetyltransferase (GNAT) family VP0635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP0635 PF03466 LysR substrate binding domain VP0638 PF00239 Resolvase, N terminal domain VP0638 PF02796 Helix-turn-helix domain of resolvase VP0642 PF00075 RNase H VP0644 PF01668 SmpB protein VP0645 PF03364 Polyketide cyclase / dehydrase and lipid transport VP0646 PF03658 RnfH family Ubiquitin VP0647 PF04355 SmpA / OmlA family VP0648 PF02463 RecF/RecN/SMC N terminal domain VP0650 PF01513 ATP-NAD kinase VP0651 PF01025 GrpE VP0652 PF00375 Sodium:dicarboxylate symporter family VP0653 PF00012 Hsp70 protein VP0654 PF00226 DnaJ domain VP0654 PF00684 DnaJ central domain VP0654 PF01556 DnaJ C terminal domain VP0656 PF07963 Prokaryotic N-terminal methylation motif VP0656 PF00114 Pilin (bacterial filament) VP0657 PF07963 Prokaryotic N-terminal methylation motif VP0657 PF00114 Pilin (bacterial filament) VP0662 PF03806 AbgT putative transporter family VP0663 PF14437 MafB19-like deaminase VP0665 PF01464 Transglycosylase SLT domain VP0665 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP0666 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VP0666 PF02769 AIR synthase related protein, C-terminal domain VP0666 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VP0671 PF01546 Peptidase family M20/M25/M40 VP0671 PF07687 Peptidase dimerisation domain VP0672 PF00860 Permease family VP0673 PF00156 Phosphoribosyl transferase domain VP0674 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VP0675 PF07417 Sigma factor-binding transcriptional regulator Crl VP0676 PF00696 Amino acid kinase family VP0676 PF01472 PUA domain VP0677 PF00171 Aldehyde dehydrogenase family VP0678 PF03477 ATP cone domain VP0679 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VP0679 PF01872 RibD C-terminal domain VP0680 PF00677 Lumazine binding domain VP0681 PF00925 GTP cyclohydrolase II VP0681 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VP0682 PF00885 6,7-dimethyl-8-ribityllumazine synthase VP0683 PF01029 NusB family VP0684 PF02769 AIR synthase related protein, C-terminal domain VP0684 PF00586 AIR synthase related protein, N-terminal domain VP0685 PF04608 Phosphatidylglycerophosphatase A VP0686 PF02779 Transketolase, pyrimidine binding domain VP0686 PF02780 Transketolase, C-terminal domain VP0686 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VP0687 PF00348 Polyprenyl synthetase VP0688 PF02609 Exonuclease VII small subunit VP0689 PF01618 MotA/TolQ/ExbB proton channel family VP0690 PF00691 OmpA family VP0691 PF02926 THUMP domain VP0691 PF02568 Thiamine biosynthesis protein (ThiI) VP0692 PF03466 LysR substrate binding domain VP0692 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP0694 PF04241 Protein of unknown function (DUF423) VP0695 PF01728 FtsJ-like methyltransferase VP0695 PF18125 RlmM ferredoxin-like domain VP0696 PF01223 DNA/RNA non-specific endonuclease VP0697 PF01367 5'-3' exonuclease, C-terminal SAM fold VP0697 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VP0698 PF03641 Possible lysine decarboxylase VP0698 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VP0698 PF11892 Domain of unknown function (DUF3412) VP0699 PF00990 Diguanylate cyclase, GGDEF domain VP0701 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VP0701 PF14489 QueF-like protein VP0702 PF07348 Syd protein (SUKH-2) VP0703 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VP0704 PF03180 NLPA lipoprotein VP0705 PF00528 Binding-protein-dependent transport system inner membrane component VP0706 PF00005 ABC transporter VP0706 PF09383 NIL domain VP0709 PF00356 Bacterial regulatory proteins, lacI family VP0710 PF00367 phosphotransferase system, EIIB VP0710 PF02378 Phosphotransferase system, EIIC VP0711 PF16657 Maltogenic Amylase, C-terminal domain VP0711 PF00128 Alpha amylase, catalytic domain VP0714 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) VP0714 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VP0715 PF00464 Serine hydroxymethyltransferase VP0716 PF04055 Radical SAM superfamily VP0716 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VP0717 PF03099 Biotin/lipoate A/B protein ligase family VP0718 PF04359 Protein of unknown function (DUF493) VP0719 PF00768 D-alanyl-D-alanine carboxypeptidase VP0719 PF07943 Penicillin-binding protein 5, C-terminal domain VP0720 PF05036 Sporulation related domain VP0720 PF03330 Lytic transglycolase VP0721 PF01098 Cell cycle protein VP0722 PF03717 Penicillin-binding Protein dimerisation domain VP0722 PF00905 Penicillin binding protein transpeptidase domain VP0723 PF02590 Predicted SPOUT methyltransferase VP0725 PF06144 DNA polymerase III, delta subunit VP0725 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VP0726 PF04390 Lipopolysaccharide-assembly VP0727 PF08264 Anticodon-binding domain of tRNA VP0727 PF13603 Leucyl-tRNA synthetase, Domain 2 VP0727 PF00133 tRNA synthetases class I (I, L, M and V) VP0728 PF07295 Zinc-ribbon containing domain VP0729 PF00795 Carbon-nitrogen hydrolase VP0730 PF03471 Transporter associated domain VP0730 PF00571 CBS domain VP0731 PF02130 Uncharacterized protein family UPF0054 VP0732 PF02562 PhoH-like protein VP0733 PF01938 TRAM domain VP0733 PF04055 Radical SAM superfamily VP0733 PF00919 Uncharacterized protein family UPF0004 VP0735 PF01494 FAD binding domain VP0737 PF01926 50S ribosome-binding GTPase VP0737 PF06071 Protein of unknown function (DUF933) VP0738 PF01195 Peptidyl-tRNA hydrolase VP0739 PF14572 Phosphoribosyl synthetase-associated domain VP0739 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VP0740 PF00288 GHMP kinases N terminal domain VP0740 PF08544 GHMP kinases C terminal VP0741 PF03550 Outer membrane lipoprotein LolB VP0742 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VP0742 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VP0742 PF01488 Shikimate / quinate 5-dehydrogenase VP0743 PF00472 RF-1 domain VP0743 PF03462 PCRF domain VP0744 PF13847 Methyltransferase domain VP0744 PF17827 PrmC N-terminal domain VP0745 PF04247 Invasion gene expression up-regulator, SirB VP0746 PF13369 Transglutaminase-like superfamily VP0747 PF00793 DAHP synthetase I family VP0748 PF02872 5'-nucleotidase, C-terminal domain VP0748 PF00149 Calcineurin-like phosphoesterase VP0749 PF04073 Aminoacyl-tRNA editing domain VP0750 PF01479 S4 domain VP0750 PF00849 RNA pseudouridylate synthase VP0751 PF01713 Smr domain VP0755 PF03173 Putative carbohydrate binding domain VP0755 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VP0755 PF00728 Glycosyl hydrolase family 20, catalytic domain VP0755 PF02838 Glycosyl hydrolase family 20, domain 2 VP0758 PF00403 Heavy-metal-associated domain VP0760 PF13609 Gram-negative porin VP0761 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VP0762 PF00749 tRNA synthetases class I (E and Q), catalytic domain VP0764 PF00691 OmpA family VP0764 PF01389 OmpA-like transmembrane domain VP0773 PF00072 Response regulator receiver domain VP0773 PF01584 CheW-like domain VP0774 PF03705 CheR methyltransferase, all-alpha domain VP0774 PF01739 CheR methyltransferase, SAM binding domain VP0775 PF00460 Flagella basal body rod protein VP0776 PF00460 Flagella basal body rod protein VP0776 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP0777 PF03963 Flagellar hook capping protein - N-terminal region VP0777 PF13860 FlgD Ig-like domain VP0777 PF13861 FlgD Tudor-like domain VP0778 PF00460 Flagella basal body rod protein VP0778 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP0778 PF07559 Flagellar basal body protein FlaE VP0780 PF00460 Flagella basal body rod protein VP0780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP0781 PF00460 Flagella basal body rod protein VP0781 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP0782 PF02107 Flagellar L-ring protein VP0783 PF02119 Flagellar P-ring protein VP0784 PF10135 Rod binding protein VP0784 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VP0785 PF07196 Flagellin hook IN motif VP0785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP0786 PF00669 Bacterial flagellin N-terminal helical region VP0788 PF00700 Bacterial flagellin C-terminal helical region VP0788 PF07196 Flagellin hook IN motif VP0788 PF00669 Bacterial flagellin N-terminal helical region VP0790 PF00669 Bacterial flagellin N-terminal helical region VP0790 PF07196 Flagellin hook IN motif VP0790 PF00700 Bacterial flagellin C-terminal helical region VP0791 PF00700 Bacterial flagellin C-terminal helical region VP0791 PF00669 Bacterial flagellin N-terminal helical region VP0791 PF07196 Flagellin hook IN motif VP0793 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VP0794 PF05524 PEP-utilising enzyme, N-terminal VP0794 PF02896 PEP-utilising enzyme, TIM barrel domain VP0794 PF00391 PEP-utilising enzyme, mobile domain VP0795 PF00381 PTS HPr component phosphorylation site VP0797 PF00291 Pyridoxal-phosphate dependent enzyme VP0799 PF04354 ZipA, C-terminal FtsZ-binding domain VP0800 PF00533 BRCA1 C Terminus (BRCT) domain VP0800 PF01653 NAD-dependent DNA ligase adenylation domain VP0800 PF03120 NAD-dependent DNA ligase OB-fold domain VP0800 PF12826 Helix-hairpin-helix motif VP0800 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VP0802 PF03573 outer membrane porin, OprD family VP0805 PF16200 C-terminal region of band_7 VP0805 PF01145 SPFH domain / Band 7 family VP0806 PF00085 Thioredoxin VP0808 PF00106 short chain dehydrogenase VP0809 PF08338 Domain of unknown function (DUF1731) VP0809 PF01370 NAD dependent epimerase/dehydratase family VP0810 PF07556 Protein of unknown function (DUF1538) VP0812 PF07556 Protein of unknown function (DUF1538) VP0816 PF12850 Calcineurin-like phosphoesterase superfamily domain VP0819 PF17323 Trans-membrane regulatory protein ToxS VP0820 PF00486 Transcriptional regulatory protein, C terminal VP0821 PF00183 Hsp90 protein VP0821 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP0822 PF05191 Adenylate kinase, active site lid VP0823 PF00762 Ferrochelatase VP0824 PF00854 POT family VP0825 PF02357 Transcription termination factor nusG VP0826 PF13537 Glutamine amidotransferase domain VP0826 PF00733 Asparagine synthase VP0827 PF02254 TrkA-N domain VP0827 PF00999 Sodium/hydrogen exchanger family VP0828 PF00480 ROK family VP0828 PF01047 MarR family VP0829 PF01979 Amidohydrolase family VP0831 PF00367 phosphotransferase system, EIIB VP0831 PF02378 Phosphotransferase system, EIIC VP0832 PF00749 tRNA synthetases class I (E and Q), catalytic domain VP0832 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VP0833 PF01475 Ferric uptake regulator family VP0835 PF00258 Flavodoxin VP0837 PF00561 alpha/beta hydrolase fold VP0838 PF17206 SeqA protein N-terminal domain VP0838 PF03925 SeqA protein C-terminal domain VP0839 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VP0839 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VP0839 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VP0839 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VP0841 PF01784 NIF3 (NGG1p interacting factor 3) VP0842 PF00285 Citrate synthase, C-terminal domain VP0843 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VP0844 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VP0845 PF02910 Fumarate reductase flavoprotein C-term VP0845 PF00890 FAD binding domain VP0846 PF13085 2Fe-2S iron-sulfur cluster binding domain VP0847 PF00676 Dehydrogenase E1 component VP0847 PF16078 2-oxoglutarate dehydrogenase N-terminus VP0847 PF16870 2-oxoglutarate dehydrogenase C-terminal VP0847 PF02779 Transketolase, pyrimidine binding domain VP0848 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VP0848 PF00364 Biotin-requiring enzyme VP0848 PF02817 e3 binding domain VP0849 PF08442 ATP-grasp domain VP0849 PF00549 CoA-ligase VP0850 PF02629 CoA binding domain VP0850 PF00549 CoA-ligase VP0851 PF00950 ABC 3 transport family VP0852 PF00005 ABC transporter VP0853 PF01297 Zinc-uptake complex component A periplasmic VP0854 PF12833 Helix-turn-helix domain VP0854 PF02311 AraC-like ligand binding domain VP0857 PF04023 FeoA domain VP0858 PF02421 Ferrous iron transport protein B VP0858 PF07670 Nucleoside recognition VP0858 PF17910 FeoB cytosolic helical domain VP0858 PF07664 Ferrous iron transport protein B C terminus VP0861 PF03485 Arginyl tRNA synthetase N terminal domain VP0861 PF05746 DALR anticodon binding domain VP0861 PF00750 tRNA synthetases class I (R) VP0863 PF06185 YecM protein VP0864 PF01842 ACT domain VP0864 PF00551 Formyl transferase VP0865 PF04851 Type III restriction enzyme, res subunit VP0865 PF13307 Helicase C-terminal domain VP0866 PF00814 Glycoprotease family VP0869 PF00561 alpha/beta hydrolase fold VP0870 PF13193 AMP-binding enzyme C-terminal domain VP0870 PF00501 AMP-binding enzyme VP0871 PF01612 3'-5' exonuclease VP0871 PF00570 HRDC domain VP0872 PF03776 Septum formation topological specificity factor MinE VP0873 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VP0874 PF05209 Septum formation inhibitor MinC, N-terminal domain VP0874 PF03775 Septum formation inhibitor MinC, C-terminal domain VP0875 PF05166 YcgL domain VP0876 PF13406 Transglycosylase SLT domain VP0877 PF03466 LysR substrate binding domain VP0877 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP0878 PF01773 Na+ dependent nucleoside transporter N-terminus VP0878 PF07662 Na+ dependent nucleoside transporter C-terminus VP0878 PF07670 Nucleoside recognition VP0879 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VP0879 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VP0881 PF00109 Beta-ketoacyl synthase, N-terminal domain VP0881 PF02801 Beta-ketoacyl synthase, C-terminal domain VP0883 PF07977 FabA-like domain VP0884 PF02801 Beta-ketoacyl synthase, C-terminal domain VP0884 PF00109 Beta-ketoacyl synthase, N-terminal domain VP0889 PF00221 Aromatic amino acid lyase VP0890 PF00535 Glycosyl transferase family 2 VP0891 PF07977 FabA-like domain VP0894 PF00550 Phosphopantetheine attachment site VP0895 PF00550 Phosphopantetheine attachment site VP0900 PF04820 Tryptophan halogenase VP0902 PF01595 Cyclin M transmembrane N-terminal domain VP0902 PF03471 Transporter associated domain VP0902 PF00571 CBS domain VP0903 PF00271 Helicase conserved C-terminal domain VP0903 PF00270 DEAD/DEAH box helicase VP0904 PF02080 TrkA-C domain VP0904 PF02254 TrkA-N domain VP0905 PF02386 Cation transport protein VP0909 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VP0910 PF03480 Bacterial extracellular solute-binding protein, family 7 VP0911 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VP0912 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VP0914 PF02954 Bacterial regulatory protein, Fis family VP0914 PF00072 Response regulator receiver domain VP0914 PF00158 Sigma-54 interaction domain VP0915 PF02743 Cache domain VP0915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP0915 PF00512 His Kinase A (phospho-acceptor) domain VP0916 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VP0916 PF05697 Bacterial trigger factor protein (TF) VP0916 PF05698 Bacterial trigger factor protein (TF) C-terminus VP0917 PF00574 Clp protease VP0918 PF07724 AAA domain (Cdc48 subfamily) VP0918 PF06689 ClpX C4-type zinc finger VP0918 PF10431 C-terminal, D2-small domain, of ClpB protein VP0919 PF00004 ATPase family associated with various cellular activities (AAA) VP0919 PF02190 ATP-dependent protease La (LON) substrate-binding domain VP0919 PF05362 Lon protease (S16) C-terminal proteolytic domain VP0920 PF00216 Bacterial DNA-binding protein VP0921 PF13145 PPIC-type PPIASE domain VP0925 PF13286 Phosphohydrolase-associated domain VP0925 PF01966 HD domain VP0927 PF00155 Aminotransferase class I and II VP0928 PF00425 chorismate binding enzyme VP0929 PF16582 Middle domain of thiamine pyrophosphate VP0929 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VP0929 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VP0930 PF12697 Alpha/beta hydrolase family VP0931 PF00378 Enoyl-CoA hydratase/isomerase VP0932 PF13378 Enolase C-terminal domain-like VP0933 PF13193 AMP-binding enzyme C-terminal domain VP0933 PF00501 AMP-binding enzyme VP0936 PF03601 Conserved hypothetical protein 698 VP0937 PF07690 Major Facilitator Superfamily VP0940 PF13533 Biotin-lipoyl like VP0941 PF00873 AcrB/AcrD/AcrF family VP0946 PF00291 Pyridoxal-phosphate dependent enzyme VP0947 PF01037 Lrp/AsnC ligand binding domain VP0947 PF13404 AsnC-type helix-turn-helix domain VP0950 PF09619 Type III secretion system lipoprotein chaperone (YscW) VP0951 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VP0953 PF17152 Periplasmic sensor domain VP0953 PF00990 Diguanylate cyclase, GGDEF domain VP0954 PF08032 RNA 2'-O ribose methyltransferase substrate binding VP0954 PF00588 SpoU rRNA Methylase family VP0955 PF11953 Domain of unknown function (DUF3470) VP0955 PF00037 4Fe-4S binding domain VP0958 PF00571 CBS domain VP0958 PF00478 IMP dehydrogenase / GMP reductase domain VP0959 PF00403 Heavy-metal-associated domain VP0960 PF01048 Phosphorylase superfamily VP0963 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP0963 PF00672 HAMP domain VP0964 PF01230 HIT domain VP0967 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VP0967 PF13036 Peptidoglycan-synthase activator LpoB VP0969 PF05728 Uncharacterised protein family (UPF0227) VP0971 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP0975 PF17757 UvrB interaction domain VP0975 PF03461 TRCF domain VP0975 PF00271 Helicase conserved C-terminal domain VP0975 PF02559 CarD-like/TRCF domain VP0975 PF00270 DEAD/DEAH box helicase VP0977 PF12704 MacB-like periplasmic core domain VP0977 PF02687 FtsX-like permease family VP0978 PF00005 ABC transporter VP0979 PF12704 MacB-like periplasmic core domain VP0979 PF02687 FtsX-like permease family VP0981 PF03772 Competence protein VP0981 PF00753 Metallo-beta-lactamase superfamily VP0981 PF13567 Domain of unknown function (DUF4131) VP0982 PF00664 ABC transporter transmembrane region VP0982 PF00005 ABC transporter VP0983 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VP0984 PF02348 Cytidylyltransferase VP0985 PF04293 SpoVR like protein VP0986 PF04285 Protein of unknown function (DUF444) VP0988 PF08298 PrkA AAA domain VP0988 PF06798 PrkA serine protein kinase C-terminal domain VP0990 PF03887 YfbU domain VP0992 PF04055 Radical SAM superfamily VP0994 PF02901 Pyruvate formate lyase-like VP0994 PF01228 Glycine radical VP0998 PF00005 ABC transporter VP0999 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP1000 PF00528 Binding-protein-dependent transport system inner membrane component VP1001 PF00528 Binding-protein-dependent transport system inner membrane component VP1003 PF03372 Endonuclease/Exonuclease/phosphatase family VP1004 PF10689 Protein of unknown function (DUF2496) VP1005 PF07445 Primosomal replication protein priC VP1006 PF01925 Sulfite exporter TauE/SafE VP1007 PF06733 DEAD_2 VP1007 PF13307 Helicase C-terminal domain VP1009 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VP1010 PF00849 RNA pseudouridylate synthase VP1011 PF03971 Monomeric isocitrate dehydrogenase VP1012 PF00313 'Cold-shock' DNA-binding domain VP1013 PF02617 ATP-dependent Clp protease adaptor protein ClpS VP1014 PF07724 AAA domain (Cdc48 subfamily) VP1014 PF00004 ATPase family associated with various cellular activities (AAA) VP1014 PF17871 AAA lid domain VP1014 PF02861 Clp amino terminal domain, pathogenicity island component VP1014 PF10431 C-terminal, D2-small domain, of ClpB protein VP1016 PF01176 Translation initiation factor 1A / IF-1 VP1017 PF04376 Arginine-tRNA-protein transferase, N terminus VP1017 PF04377 Arginine-tRNA-protein transferase, C terminus VP1018 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VP1020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VP1021 PF10692 Protein of unknown function (DUF2498) VP1022 PF01751 Toprim domain VP1022 PF01131 DNA topoisomerase VP1022 PF08272 Topoisomerase I zinc-ribbon-like VP1022 PF01396 Topoisomerase DNA binding C4 zinc finger VP1023 PF00483 Nucleotidyl transferase VP1024 PF00534 Glycosyl transferases group 1 VP1024 PF08323 Starch synthase catalytic domain VP1028 PF04993 TfoX N-terminal domain VP1028 PF04994 TfoX C-terminal domain VP1030 PF00356 Bacterial regulatory proteins, lacI family VP1031 PF02613 Nitrate reductase delta subunit VP1032 PF00486 Transcriptional regulatory protein, C terminal VP1032 PF00072 Response regulator receiver domain VP1033 PF02698 DUF218 domain VP1034 PF13847 Methyltransferase domain VP1035 PF17193 MukF C-terminal domain VP1035 PF03882 MukF winged-helix domain VP1035 PF17192 MukF middle domain VP1036 PF04288 MukE-like family VP1037 PF04310 MukB N-terminal VP1037 PF16330 MukB hinge domain VP1040 PF18030 RimK PreATP-grasp domain VP1040 PF08443 RimK-like ATP-grasp domain VP1043 PF18030 RimK PreATP-grasp domain VP1043 PF08443 RimK-like ATP-grasp domain VP1044 PF08003 Protein of unknown function (DUF1698) VP1045 PF13649 Methyltransferase domain VP1046 PF01904 Protein of unknown function DUF72 VP1047 PF01336 OB-fold nucleic acid binding domain VP1047 PF00152 tRNA synthetases class II (D, K and N) VP1047 PF02938 GAD domain VP1048 PF02075 Crossover junction endodeoxyribonuclease RuvC VP1051 PF07499 RuvA, C-terminal domain VP1051 PF01330 RuvA N terminal domain VP1052 PF05496 Holliday junction DNA helicase RuvB P-loop domain VP1052 PF17864 RuvB AAA lid domain VP1052 PF05491 RuvB C-terminal winged helix domain VP1053 PF01654 Cytochrome bd terminal oxidase subunit I VP1054 PF02322 Cytochrome bd terminal oxidase subunit II VP1056 PF03061 Thioesterase superfamily VP1057 PF01618 MotA/TolQ/ExbB proton channel family VP1058 PF02472 Biopolymer transport protein ExbD/TolR VP1060 PF04052 TolB amino-terminal domain VP1060 PF07676 WD40-like Beta Propeller Repeat VP1061 PF00691 OmpA family VP1062 PF13174 Tetratricopeptide repeat VP1062 PF16331 TolA binding protein trimerisation VP1063 PF02445 Quinolinate synthetase A protein VP1065 PF03994 Domain of Unknown Function (DUF350) VP1067 PF03738 Glutathionylspermidine synthase preATP-grasp VP1069 PF00072 Response regulator receiver domain VP1069 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1069 PF09308 LuxQ, periplasmic VP1069 PF00512 His Kinase A (phospho-acceptor) domain VP1070 PF06610 L-alanine exporter VP1077 PF00589 Phage integrase family VP1077 PF13356 Arm DNA-binding domain VP1083 PF00580 UvrD/REP helicase N-terminal domain VP1083 PF13361 UvrD-like helicase C-terminal domain VP1085 PF00899 ThiF family VP1088 PF02743 Cache domain VP1088 PF00672 HAMP domain VP1088 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP1091 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP1091 PF00529 HlyD membrane-fusion protein of T1SS VP1092 PF00873 AcrB/AcrD/AcrF family VP1096 PF00579 tRNA synthetases class I (W and Y) VP1098 PF03372 Endonuclease/Exonuclease/phosphatase family VP1099 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VP1101 PF03466 LysR substrate binding domain VP1101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP1103 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VP1103 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VP1104 PF01037 Lrp/AsnC ligand binding domain VP1105 PF01580 FtsK/SpoIIIE family VP1105 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VP1105 PF17854 FtsK alpha domain VP1105 PF09397 Ftsk gamma domain VP1106 PF03548 Outer membrane lipoprotein carrier protein LolA VP1107 PF12002 MgsA AAA+ ATPase C terminal VP1107 PF00004 ATPase family associated with various cellular activities (AAA) VP1107 PF16193 AAA C-terminal domain VP1108 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VP1108 PF02403 Seryl-tRNA synthetase N-terminal domain VP1111 PF01258 Prokaryotic dksA/traR C4-type zinc finger VP1112 PF00202 Aminotransferase class-III VP1113 PF06968 Biotin and Thiamin Synthesis associated domain VP1113 PF04055 Radical SAM superfamily VP1114 PF00155 Aminotransferase class I and II VP1115 PF08241 Methyltransferase domain VP1118 PF01435 Peptidase family M48 VP1120 PF00106 short chain dehydrogenase VP1128 PF08328 Adenylosuccinate lyase C-terminal VP1128 PF00206 Lyase VP1129 PF04356 Protein of unknown function (DUF489) VP1132 PF00294 pfkB family carbohydrate kinase VP1133 PF00816 H-NS histone family VP1134 PF03553 Na+/H+ antiporter family VP1136 PF00158 Sigma-54 interaction domain VP1136 PF02954 Bacterial regulatory protein, Fis family VP1136 PF00072 Response regulator receiver domain VP1137 PF08029 HisG, C-terminal domain VP1137 PF01634 ATP phosphoribosyltransferase VP1138 PF00815 Histidinol dehydrogenase VP1139 PF00155 Aminotransferase class I and II VP1140 PF08645 Polynucleotide kinase 3 phosphatase VP1140 PF00475 Imidazoleglycerol-phosphate dehydratase VP1141 PF00117 Glutamine amidotransferase class-I VP1142 PF00977 Histidine biosynthesis protein VP1143 PF00977 Histidine biosynthesis protein VP1144 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VP1144 PF01502 Phosphoribosyl-AMP cyclohydrolase VP1145 PF02810 SEC-C motif VP1147 PF00563 EAL domain VP1147 PF08668 HDOD domain VP1148 PF00149 Calcineurin-like phosphoesterase VP1149 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VP1150 PF01406 tRNA synthetases class I (C) catalytic domain VP1150 PF09190 DALR domain VP1151 PF00265 Thymidine kinase VP1152 PF02698 DUF218 domain VP1157 PF01226 Formate/nitrite transporter VP1159 PF03649 Uncharacterised protein family (UPF0014) VP1160 PF06796 Periplasmic nitrate reductase protein NapE VP1161 PF03264 NapC/NirT cytochrome c family, N-terminal region VP1162 PF01568 Molydopterin dinucleotide binding domain VP1162 PF18364 Molybdopterin oxidoreductase N-terminal domain VP1162 PF00384 Molybdopterin oxidoreductase VP1163 PF16874 Glycosyl hydrolase family 36 C-terminal domain VP1163 PF16875 Glycosyl hydrolase family 36 N-terminal domain VP1165 PF01368 DHH family VP1165 PF02833 DHHA2 domain VP1167 PF00005 ABC transporter VP1168 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP1168 PF00005 ABC transporter VP1169 PF12911 N-terminal TM domain of oligopeptide transport permease C VP1169 PF00528 Binding-protein-dependent transport system inner membrane component VP1170 PF00528 Binding-protein-dependent transport system inner membrane component VP1171 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP1172 PF02954 Bacterial regulatory protein, Fis family VP1172 PF00158 Sigma-54 interaction domain VP1173 PF04012 PspA/IM30 family VP1174 PF06667 Phage shock protein B VP1175 PF04024 PspC domain VP1176 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP1177 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP1178 PF00873 AcrB/AcrD/AcrF family VP1179 PF03352 Methyladenine glycosylase VP1180 PF03280 Proteobacterial lipase chaperone protein VP1181 PF00561 alpha/beta hydrolase fold VP1182 PF01053 Cys/Met metabolism PLP-dependent enzyme VP1183 PF13091 PLD-like domain VP1183 PF13396 Phospholipase_D-nuclease N-terminal VP1184 PF00209 Sodium:neurotransmitter symporter family VP1185 PF12729 Four helix bundle sensory module for signal transduction VP1185 PF00672 HAMP domain VP1185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP1186 PF00849 RNA pseudouridylate synthase VP1188 PF00175 Oxidoreductase NAD-binding domain VP1188 PF00111 2Fe-2S iron-sulfur cluster binding domain VP1188 PF00970 Oxidoreductase FAD-binding domain VP1189 PF03063 Prismane/CO dehydrogenase family VP1190 PF00158 Sigma-54 interaction domain VP1190 PF01590 GAF domain VP1193 PF01066 CDP-alcohol phosphatidyltransferase VP1194 PF00005 ABC transporter VP1195 PF00528 Binding-protein-dependent transport system inner membrane component VP1196 PF13416 Bacterial extracellular solute-binding protein VP1197 PF09335 SNARE associated Golgi protein VP1199 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VP1199 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP1201 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1201 PF00512 His Kinase A (phospho-acceptor) domain VP1202 PF00072 Response regulator receiver domain VP1202 PF00196 Bacterial regulatory proteins, luxR family VP1204 PF06945 Protein of unknown function (DUF1289) VP1207 PF00149 Calcineurin-like phosphoesterase VP1207 PF02872 5'-nucleotidase, C-terminal domain VP1210 PF01386 Ribosomal L25p family VP1211 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1212 PF00072 Response regulator receiver domain VP1212 PF00486 Transcriptional regulatory protein, C terminal VP1214 PF00271 Helicase conserved C-terminal domain VP1214 PF04851 Type III restriction enzyme, res subunit VP1215 PF00849 RNA pseudouridylate synthase VP1215 PF01479 S4 domain VP1216 PF07690 Major Facilitator Superfamily VP1219 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VP1222 PF03264 NapC/NirT cytochrome c family, N-terminal region VP1223 PF11066 Protein of unknown function (DUF2867) VP1223 PF13460 NAD(P)H-binding VP1224 PF01554 MatE VP1225 PF00005 ABC transporter VP1228 PF06965 Na+/H+ antiporter 1 VP1229 PF16295 Tetracyclin repressor-like, C-terminal domain VP1229 PF00440 Bacterial regulatory proteins, tetR family VP1230 PF09317 Domain of unknown function (DUF1974) VP1230 PF02770 Acyl-CoA dehydrogenase, middle domain VP1230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VP1230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VP1231 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VP1231 PF07055 Enoyl reductase FAD binding domain VP1231 PF12241 Trans-2-enoyl-CoA reductase catalytic region VP1232 PF06826 Predicted Permease Membrane Region VP1232 PF02080 TrkA-C domain VP1233 PF00462 Glutaredoxin VP1235 PF00465 Iron-containing alcohol dehydrogenase VP1236 PF01418 Helix-turn-helix domain, rpiR family VP1236 PF01380 SIS domain VP1237 PF00282 Pyridoxal-dependent decarboxylase conserved domain VP1239 PF03956 Lysine exporter LysO VP1241 PF04994 TfoX C-terminal domain VP1241 PF04993 TfoX N-terminal domain VP1245 PF00512 His Kinase A (phospho-acceptor) domain VP1245 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP1245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1247 PF00266 Aminotransferase class-V VP1248 PF00291 Pyridoxal-phosphate dependent enzyme VP1249 PF00005 ABC transporter VP1249 PF00664 ABC transporter transmembrane region VP1250 PF00005 ABC transporter VP1250 PF00664 ABC transporter transmembrane region VP1251 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP1253 PF00266 Aminotransferase class-V VP1255 PF00990 Diguanylate cyclase, GGDEF domain VP1255 PF00072 Response regulator receiver domain VP1256 PF00939 Sodium:sulfate symporter transmembrane region VP1257 PF02698 DUF218 domain VP1258 PF03949 Malic enzyme, NAD binding domain VP1258 PF00390 Malic enzyme, N-terminal domain VP1259 PF00271 Helicase conserved C-terminal domain VP1259 PF04408 Helicase associated domain (HA2) VP1259 PF08482 ATP-dependent helicase C-terminal VP1259 PF00270 DEAD/DEAH box helicase VP1260 PF02253 Phospholipase A1 VP1262 PF09423 PhoD-like phosphatase VP1262 PF16655 PhoD-like phosphatase, N-terminal domain VP1263 PF01259 SAICAR synthetase VP1267 PF00691 OmpA family VP1267 PF05736 OprF membrane domain VP1270 PF02913 FAD linked oxidases, C-terminal domain VP1270 PF01565 FAD binding domain VP1270 PF13183 4Fe-4S dicluster domain VP1271 PF04191 Phospholipid methyltransferase VP1273 PF00221 Aromatic amino acid lyase VP1274 PF17391 Urocanase N-terminal domain VP1274 PF01175 Urocanase Rossmann-like domain VP1274 PF17392 Urocanase C-terminal domain VP1275 PF00491 Arginase family VP1276 PF01979 Amidohydrolase family VP1277 PF07702 UTRA domain VP1277 PF00392 Bacterial regulatory proteins, gntR family VP1280 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VP1280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VP1280 PF03129 Anticodon binding domain VP1280 PF02824 TGS domain VP1281 PF01632 Ribosomal protein L35 VP1282 PF00453 Ribosomal protein L20 VP1283 PF01906 Putative heavy-metal-binding VP1289 PF17158 Membrane-associated sensor, integral membrane domain VP1289 PF00990 Diguanylate cyclase, GGDEF domain VP1290 PF01409 tRNA synthetases class II core domain (F) VP1290 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VP1291 PF03147 Ferredoxin-fold anticodon binding domain VP1291 PF01588 Putative tRNA binding domain VP1291 PF03483 B3/4 domain VP1291 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VP1291 PF03484 tRNA synthetase B5 domain VP1294 PF00216 Bacterial DNA-binding protein VP1296 PF05724 Thiopurine S-methyltransferase (TPMT) VP1297 PF02222 ATP-grasp domain VP1298 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VP1298 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VP1299 PF04172 LrgB-like family VP1300 PF03788 LrgA family VP1301 PF08411 Exonuclease C-terminal VP1301 PF00929 Exonuclease VP1302 PF00375 Sodium:dicarboxylate symporter family VP1303 PF13460 NAD(P)H-binding VP1304 PF02277 Phosphoribosyltransferase VP1305 PF02654 Cobalamin-5-phosphate synthase VP1306 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VP1310 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VP1311 PF01032 FecCD transport family VP1312 PF00005 ABC transporter VP1316 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP1316 PF03466 LysR substrate binding domain VP1320 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VP1321 PF16363 GDP-mannose 4,6 dehydratase VP1322 PF04991 LicD family VP1323 PF01863 Protein of unknown function DUF45 VP1324 PF05971 RNA methyltransferase VP1328 PF00392 Bacterial regulatory proteins, gntR family VP1329 PF00171 Aldehyde dehydrogenase family VP1330 PF05544 Proline racemase VP1333 PF02423 Ornithine cyclodeaminase/mu-crystallin family VP1335 PF00701 Dihydrodipicolinate synthetase family VP1336 PF00005 ABC transporter VP1336 PF08402 TOBE domain VP1337 PF00528 Binding-protein-dependent transport system inner membrane component VP1338 PF00528 Binding-protein-dependent transport system inner membrane component VP1340 PF08453 Peptidase family M9 N-terminal VP1340 PF01752 Collagenase VP1343 PF00005 ABC transporter VP1343 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP1344 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP1344 PF00005 ABC transporter VP1345 PF12911 N-terminal TM domain of oligopeptide transport permease C VP1345 PF00528 Binding-protein-dependent transport system inner membrane component VP1346 PF00528 Binding-protein-dependent transport system inner membrane component VP1347 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP1348 PF01546 Peptidase family M20/M25/M40 VP1348 PF07687 Peptidase dimerisation domain VP1349 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VP1350 PF04209 homogentisate 1,2-dioxygenase VP1352 PF02798 Glutathione S-transferase, N-terminal domain VP1352 PF14497 Glutathione S-transferase, C-terminal domain VP1359 PF13533 Biotin-lipoyl like VP1361 PF02405 Permease MlaE VP1363 PF00005 ABC transporter VP1365 PF07687 Peptidase dimerisation domain VP1365 PF01546 Peptidase family M20/M25/M40 VP1366 PF08543 Phosphomethylpyrimidine kinase VP1367 PF03466 LysR substrate binding domain VP1367 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP1371 PF00300 Histidine phosphatase superfamily (branch 1) VP1374 PF00939 Sodium:sulfate symporter transmembrane region VP1375 PF00512 His Kinase A (phospho-acceptor) domain VP1375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1375 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP1376 PF02954 Bacterial regulatory protein, Fis family VP1376 PF00072 Response regulator receiver domain VP1376 PF00158 Sigma-54 interaction domain VP1377 PF00563 EAL domain VP1377 PF00990 Diguanylate cyclase, GGDEF domain VP1377 PF03707 Bacterial signalling protein N terminal repeat VP1378 PF11871 Domain of unknown function (DUF3391) VP1378 PF01966 HD domain VP1379 PF01810 LysE type translocator VP1380 PF11230 Protein of unknown function (DUF3029) VP1381 PF04055 Radical SAM superfamily VP1383 PF03741 Integral membrane protein TerC family VP1385 PF08525 Opacity-associated protein A N-terminal motif VP1385 PF01476 LysM domain VP1385 PF01551 Peptidase family M23 VP1391 PF00158 Sigma-54 interaction domain VP1391 PF02954 Bacterial regulatory protein, Fis family VP1392 PF10431 C-terminal, D2-small domain, of ClpB protein VP1392 PF07724 AAA domain (Cdc48 subfamily) VP1392 PF00004 ATPase family associated with various cellular activities (AAA) VP1392 PF17871 AAA lid domain VP1393 PF05638 Type VI secretion system effector, Hcp VP1394 PF04717 Type VI secretion system, phage-baseplate injector VP1400 PF00069 Protein kinase domain VP1403 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath VP1405 PF05947 Type VI secretion system, TssF VP1407 PF01037 Lrp/AsnC ligand binding domain VP1413 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE VP1423 PF01966 HD domain VP1425 PF00465 Iron-containing alcohol dehydrogenase VP1426 PF03222 Tryptophan/tyrosine permease family VP1431 PF00664 ABC transporter transmembrane region VP1431 PF00005 ABC transporter VP1432 PF00664 ABC transporter transmembrane region VP1432 PF00005 ABC transporter VP1438 PF00012 Hsp70 protein VP1439 PF00012 Hsp70 protein VP1441 PF00990 Diguanylate cyclase, GGDEF domain VP1441 PF17158 Membrane-associated sensor, integral membrane domain VP1447 PF00384 Molybdopterin oxidoreductase VP1447 PF01568 Molydopterin dinucleotide binding domain VP1447 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VP1448 PF13247 4Fe-4S dicluster domain VP1448 PF12800 4Fe-4S binding domain VP1449 PF04976 DMSO reductase anchor subunit (DmsC) VP1450 PF02613 Nitrate reductase delta subunit VP1452 PF02525 Flavodoxin-like fold VP1453 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VP1453 PF00271 Helicase conserved C-terminal domain VP1453 PF04408 Helicase associated domain (HA2) VP1453 PF00270 DEAD/DEAH box helicase VP1453 PF11898 Domain of unknown function (DUF3418) VP1456 PF02028 BCCT, betaine/carnitine/choline family transporter VP1458 PF02397 Bacterial sugar transferase VP1459 PF00535 Glycosyl transferase family 2 VP1461 PF00534 Glycosyl transferases group 1 VP1461 PF13439 Glycosyltransferase Family 4 VP1467 PF13439 Glycosyltransferase Family 4 VP1467 PF00534 Glycosyl transferases group 1 VP1468 PF00534 Glycosyl transferases group 1 VP1468 PF13439 Glycosyltransferase Family 4 VP1469 PF00158 Sigma-54 interaction domain VP1469 PF02954 Bacterial regulatory protein, Fis family VP1469 PF00072 Response regulator receiver domain VP1474 PF02563 Polysaccharide biosynthesis/export protein VP1474 PF10531 SLBB domain VP1476 PF01740 STAS domain VP1477 PF01068 ATP dependent DNA ligase domain VP1477 PF14743 DNA ligase OB-like domain VP1479 PF01554 MatE VP1480 PF00677 Lumazine binding domain VP1481 PF03881 Fructosamine kinase VP1482 PF00072 Response regulator receiver domain VP1482 PF01339 CheB methylesterase VP1483 PF05230 MASE2 domain VP1483 PF00990 Diguanylate cyclase, GGDEF domain VP1485 PF00877 NlpC/P60 family VP1486 PF12729 Four helix bundle sensory module for signal transduction VP1486 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP1486 PF00672 HAMP domain VP1493 PF03942 DTW domain VP1494 PF00480 ROK family VP1496 PF03454 MoeA C-terminal region (domain IV) VP1496 PF03453 MoeA N-terminal region (domain I and II) VP1496 PF00994 Probable molybdopterin binding domain VP1497 PF12804 MobA-like NTP transferase domain VP1498 PF08402 TOBE domain VP1498 PF00005 ABC transporter VP1499 PF00528 Binding-protein-dependent transport system inner membrane component VP1501 PF12849 PBP superfamily domain VP1502 PF00158 Sigma-54 interaction domain VP1502 PF02954 Bacterial regulatory protein, Fis family VP1502 PF00072 Response regulator receiver domain VP1503 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1503 PF00512 His Kinase A (phospho-acceptor) domain VP1504 PF00005 ABC transporter VP1504 PF12848 ABC transporter VP1506 PF02634 FdhD/NarQ family VP1511 PF02613 Nitrate reductase delta subunit VP1513 PF01568 Molydopterin dinucleotide binding domain VP1513 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VP1513 PF00384 Molybdopterin oxidoreductase VP1514 PF13247 4Fe-4S dicluster domain VP1517 PF03527 RHS protein VP1517 PF05593 RHS Repeat VP1523 PF00909 Ammonium Transporter Family VP1524 PF02146 Sir2 family VP1525 PF13416 Bacterial extracellular solute-binding protein VP1526 PF13416 Bacterial extracellular solute-binding protein VP1527 PF00528 Binding-protein-dependent transport system inner membrane component VP1528 PF00528 Binding-protein-dependent transport system inner membrane component VP1529 PF08402 TOBE domain VP1529 PF00005 ABC transporter VP1533 PF01171 PP-loop family VP1535 PF00582 Universal stress protein family VP1536 PF13545 Crp-like helix-turn-helix domain VP1536 PF00027 Cyclic nucleotide-binding domain VP1539 PF00403 Heavy-metal-associated domain VP1541 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VP1541 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VP1544 PF00115 Cytochrome C and Quinol oxidase polypeptide I VP1547 PF09308 LuxQ, periplasmic VP1547 PF00512 His Kinase A (phospho-acceptor) domain VP1547 PF00072 Response regulator receiver domain VP1547 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1583 PF05840 Bacteriophage replication gene A protein (GPA) VP1589 PF17414 MatP C-terminal ribbon-helix-helix domain VP1589 PF06303 MatP N-terminal domain VP1590 PF13654 AAA domain VP1590 PF05362 Lon protease (S16) C-terminal proteolytic domain VP1591 PF07977 FabA-like domain VP1593 PF04957 Ribosome modulation factor VP1595 PF16326 ABC transporter C-terminal domain VP1595 PF00005 ABC transporter VP1595 PF12848 ABC transporter VP1597 PF10672 S-adenosylmethionine-dependent methyltransferase VP1597 PF01170 Putative RNA methylase family UPF0020 VP1597 PF02926 THUMP domain VP1599 PF07126 Cell-division protein ZapC VP1601 PF01180 Dihydroorotate dehydrogenase VP1602 PF05088 Bacterial NAD-glutamate dehydrogenase VP1604 PF11940 Domain of unknown function (DUF3458) Ig-like fold VP1604 PF01433 Peptidase family M1 domain VP1604 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VP1606 PF03572 Peptidase family S41 VP1606 PF17804 Tail specific protease N-terminal domain VP1606 PF11818 C-terminal domain of tail specific protease (DUF3340) VP1606 PF00595 PDZ domain VP1607 PF17516 ProQ C-terminal domain VP1607 PF04352 ProQ/FINO family VP1608 PF13185 GAF domain VP1609 PF00005 ABC transporter VP1609 PF00664 ABC transporter transmembrane region VP1610 PF04403 Paraquat-inducible protein A VP1611 PF02470 MlaD protein VP1612 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VP1612 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VP1612 PF01189 16S rRNA methyltransferase RsmB/F VP1616 PF00793 DAHP synthetase I family VP1617 PF04461 Protein of unknown function (DUF520) VP1619 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VP1619 PF10414 Sirohaem synthase dimerisation region VP1619 PF14824 Sirohaem biosynthesis protein central VP1620 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP1621 PF00528 Binding-protein-dependent transport system inner membrane component VP1622 PF00528 Binding-protein-dependent transport system inner membrane component VP1623 PF00005 ABC transporter VP1624 PF01027 Inhibitor of apoptosis-promoting Bax1 VP1626 PF04358 DsrC like protein VP1627 PF00708 Acylphosphatase VP1628 PF02743 Cache domain VP1628 PF00672 HAMP domain VP1628 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP1629 PF17785 PUA-like domain VP1629 PF10672 S-adenosylmethionine-dependent methyltransferase VP1632 PF05736 OprF membrane domain VP1632 PF00691 OmpA family VP1635 PF05736 OprF membrane domain VP1635 PF00691 OmpA family VP1637 PF17158 Membrane-associated sensor, integral membrane domain VP1637 PF00990 Diguanylate cyclase, GGDEF domain VP1638 PF06508 Queuosine biosynthesis protein QueC VP1639 PF04055 Radical SAM superfamily VP1642 PF00089 Trypsin VP1644 PF16177 Acetyl-coenzyme A synthetase N-terminus VP1644 PF13193 AMP-binding enzyme C-terminal domain VP1644 PF00501 AMP-binding enzyme VP1645 PF04303 PrpF protein VP1646 PF00694 Aconitase C-terminal domain VP1646 PF00330 Aconitase family (aconitate hydratase) VP1647 PF00285 Citrate synthase, C-terminal domain VP1653 PF01970 Tripartite tricarboxylate transporter TctA family VP1654 PF01925 Sulfite exporter TauE/SafE VP1656 PF05844 YopD protein VP1658 PF07720 Tetratricopeptide repeat VP1659 PF04792 V antigen (LcrV) protein VP1660 PF07216 LcrG protein VP1661 PF09621 Type III secretion system regulator (LcrR) VP1662 PF00771 FHIPEP family VP1666 PF09059 TyeA VP1667 PF07201 HrpJ-like domain VP1668 PF02874 ATP synthase alpha/beta family, beta-barrel domain VP1668 PF18269 T3SS EscN ATPase C-terminal domain VP1668 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VP1671 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VP1672 PF00813 FliP family VP1673 PF01313 Bacterial export proteins, family 3 VP1674 PF01311 Bacterial export proteins, family 1 VP1675 PF01312 FlhB HrpN YscU SpaS Family VP1676 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP1676 PF03466 LysR substrate binding domain VP1677 PF12146 Serine aminopeptidase, S33 VP1678 PF12146 Serine aminopeptidase, S33 VP1686 PF02661 Fic/DOC family VP1688 PF02108 Flagellar assembly protein FliH VP1690 PF01514 Secretory protein of YscJ/FliF family VP1691 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI VP1693 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) VP1694 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF VP1695 PF16697 Inner membrane component of T3SS, cytoplasmic domain VP1695 PF16693 Inner membrane component of T3SS, periplasmic domain VP1696 PF00263 Bacterial type II and III secretion system protein VP1696 PF03958 Bacterial type II/III secretion system short domain VP1699 PF12833 Helix-turn-helix domain VP1703 PF00171 Aldehyde dehydrogenase family VP1704 PF00158 Sigma-54 interaction domain VP1704 PF01590 GAF domain VP1704 PF02954 Bacterial regulatory protein, Fis family VP1708 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VP1708 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VP1709 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VP1710 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VP1710 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VP1711 PF00072 Response regulator receiver domain VP1711 PF12431 Transcriptional regulator VP1712 PF17203 Single cache domain 3 VP1712 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1712 PF00989 PAS fold VP1712 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VP1714 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP1718 PF03150 Di-haem cytochrome c peroxidase VP1718 PF00034 Cytochrome c VP1719 PF13840 ACT domain VP1719 PF00696 Amino acid kinase family VP1720 PF06339 Ectoine synthase VP1721 PF00202 Aminotransferase class-III VP1722 PF00583 Acetyltransferase (GNAT) family VP1723 PF02028 BCCT, betaine/carnitine/choline family transporter VP1726 PF00005 ABC transporter VP1726 PF00571 CBS domain VP1727 PF00528 Binding-protein-dependent transport system inner membrane component VP1728 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VP1730 PF00501 AMP-binding enzyme VP1734 PF00486 Transcriptional regulatory protein, C terminal VP1734 PF00072 Response regulator receiver domain VP1735 PF00512 His Kinase A (phospho-acceptor) domain VP1735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1735 PF08521 Two-component sensor kinase N-terminal VP1736 PF00884 Sulfatase VP1741 PF01235 Sodium:alanine symporter family VP1743 PF01810 LysE type translocator VP1744 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VP1745 PF03279 Bacterial lipid A biosynthesis acyltransferase VP1747 PF13520 Amino acid permease VP1751 PF04204 Homoserine O-succinyltransferase VP1754 PF00990 Diguanylate cyclase, GGDEF domain VP1754 PF00563 EAL domain VP1754 PF03707 Bacterial signalling protein N terminal repeat VP1755 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VP1755 PF00512 His Kinase A (phospho-acceptor) domain VP1755 PF01627 Hpt domain VP1755 PF00672 HAMP domain VP1755 PF00072 Response regulator receiver domain VP1755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1758 PF00132 Bacterial transferase hexapeptide (six repeats) VP1758 PF12464 Maltose acetyltransferase VP1760 PF01928 CYTH domain VP1762 PF04237 YjbR VP1763 PF01047 MarR family VP1765 PF12833 Helix-turn-helix domain VP1766 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VP1766 PF02272 DHHA1 domain VP1766 PF01411 tRNA synthetases class II (A) VP1768 PF00563 EAL domain VP1768 PF00196 Bacterial regulatory proteins, luxR family VP1770 PF02833 DHHA2 domain VP1770 PF01368 DHH family VP1771 PF00202 Aminotransferase class-III VP1772 PF00171 Aldehyde dehydrogenase family VP1773 PF04371 Porphyromonas-type peptidyl-arginine deiminase VP1774 PF00795 Carbon-nitrogen hydrolase VP1775 PF01266 FAD dependent oxidoreductase VP1776 PF00171 Aldehyde dehydrogenase family VP1777 PF00171 Aldehyde dehydrogenase family VP1778 PF01381 Helix-turn-helix VP1778 PF07883 Cupin domain VP1779 PF07722 Peptidase C26 VP1781 PF00120 Glutamine synthetase, catalytic domain VP1782 PF03553 Na+/H+ antiporter family VP1787 PF13333 Integrase core domain VP1787 PF00665 Integrase core domain VP1787 PF13276 HTH-like domain VP1788 PF01527 Transposase VP1797 PF01042 Endoribonuclease L-PSP VP1812 PF13676 TIR domain VP1820 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system VP1821 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VP1826 PF13091 PLD-like domain VP1864 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VP1865 PF13495 Phage integrase, N-terminal SAM-like domain VP1865 PF00589 Phage integrase family VP1868 PF13302 Acetyltransferase (GNAT) domain VP1869 PF18024 Helix-turn-helix domain VP1869 PF00158 Sigma-54 interaction domain VP1870 PF05128 Domain of unknown function (DUF697) VP1871 PF04317 YcjX-like family, DUF463 VP1875 PF04715 Anthranilate synthase component I, N terminal region VP1875 PF00425 chorismate binding enzyme VP1876 PF00512 His Kinase A (phospho-acceptor) domain VP1876 PF00072 Response regulator receiver domain VP1876 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1876 PF09308 LuxQ, periplasmic VP1878 PF00293 NUDIX domain VP1879 PF03222 Tryptophan/tyrosine permease family VP1880 PF03313 Serine dehydratase alpha chain VP1880 PF03315 Serine dehydratase beta chain VP1881 PF04940 Sensors of blue-light using FAD VP1881 PF00563 EAL domain VP1883 PF01242 6-pyruvoyl tetrahydropterin synthase VP1889 PF00313 'Cold-shock' DNA-binding domain VP1890 PF00575 S1 RNA binding domain VP1890 PF08206 Ribonuclease B OB domain VP1890 PF00773 RNB domain VP1890 PF17876 Cold shock domain VP1890 PF08461 Ribonuclease R winged-helix domain VP1892 PF12729 Four helix bundle sensory module for signal transduction VP1892 PF00672 HAMP domain VP1892 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP1893 PF00152 tRNA synthetases class II (D, K and N) VP1893 PF01336 OB-fold nucleic acid binding domain VP1896 PF00155 Aminotransferase class I and II VP1896 PF00392 Bacterial regulatory proteins, gntR family VP1900 PF00155 Aminotransferase class I and II VP1904 PF00672 HAMP domain VP1904 PF02743 Cache domain VP1904 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP1905 PF02028 BCCT, betaine/carnitine/choline family transporter VP1906 PF01047 MarR family VP1907 PF00072 Response regulator receiver domain VP1907 PF00196 Bacterial regulatory proteins, luxR family VP1908 PF17200 Single Cache domain 2 VP1908 PF07730 Histidine kinase VP1909 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VP1911 PF03480 Bacterial extracellular solute-binding protein, family 7 VP1914 PF00753 Metallo-beta-lactamase superfamily VP1915 PF05951 Bacterial protein of unknown function (DUF882) VP1916 PF03734 L,D-transpeptidase catalytic domain VP1916 PF01471 Putative peptidoglycan binding domain VP1921 PF00925 GTP cyclohydrolase II VP1923 PF03918 Cytochrome C biogenesis protein VP1924 PF08534 Redoxin VP1925 PF01578 Cytochrome C assembly protein VP1925 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VP1926 PF03916 Polysulphide reductase, NrfD VP1927 PF13247 4Fe-4S dicluster domain VP1929 PF02335 Cytochrome c552 VP1932 PF03989 DNA gyrase C-terminal domain, beta-propeller VP1932 PF00521 DNA gyrase/topoisomerase IV, subunit A VP1934 PF03477 ATP cone domain VP1934 PF02867 Ribonucleotide reductase, barrel domain VP1934 PF00317 Ribonucleotide reductase, all-alpha domain VP1935 PF00268 Ribonucleotide reductase, small chain VP1937 PF00994 Probable molybdopterin binding domain VP1940 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VP1941 PF03435 Saccharopine dehydrogenase NADP binding domain VP1941 PF16653 Saccharopine dehydrogenase C-terminal domain VP1942 PF00202 Aminotransferase class-III VP1943 PF01066 CDP-alcohol phosphatidyltransferase VP1944 PF08459 UvrC Helix-hairpin-helix N-terminal VP1944 PF01541 GIY-YIG catalytic domain VP1944 PF02151 UvrB/uvrC motif VP1945 PF00072 Response regulator receiver domain VP1945 PF00196 Bacterial regulatory proteins, luxR family VP1946 PF03104 DNA polymerase family B, exonuclease domain VP1946 PF00136 DNA polymerase family B VP1948 PF09285 Elongation factor P, C-terminal VP1948 PF08207 Elongation factor P (EF-P) KOW-like domain VP1948 PF01132 Elongation factor P (EF-P) OB domain VP1949 PF04269 Protein of unknown function, DUF440 VP1951 PF01479 S4 domain VP1951 PF00849 RNA pseudouridylate synthase VP1953 PF01300 Telomere recombination VP1954 PF02811 PHP domain VP1955 PF08056 Tryptophan operon leader peptide VP1956 PF00425 chorismate binding enzyme VP1956 PF04715 Anthranilate synthase component I, N terminal region VP1957 PF00117 Glutamine amidotransferase class-I VP1958 PF02885 Glycosyl transferase family, helical bundle domain VP1958 PF00591 Glycosyl transferase family, a/b domain VP1959 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VP1959 PF00218 Indole-3-glycerol phosphate synthase VP1960 PF00291 Pyridoxal-phosphate dependent enzyme VP1961 PF00290 Tryptophan synthase alpha chain VP1962 PF00027 Cyclic nucleotide-binding domain VP1962 PF13545 Crp-like helix-turn-helix domain VP1964 PF13193 AMP-binding enzyme C-terminal domain VP1964 PF00501 AMP-binding enzyme VP1966 PF00375 Sodium:dicarboxylate symporter family VP1967 PF17327 Acyl homoserine lactone synthase VP1968 PF00072 Response regulator receiver domain VP1968 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1970 PF04279 Intracellular septation protein A VP1971 PF03061 Thioesterase superfamily VP1972 PF03795 YCII-related domain VP1974 PF01717 Cobalamin-independent synthase, Catalytic domain VP1974 PF08267 Cobalamin-independent synthase, N-terminal domain VP1976 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP1976 PF03466 LysR substrate binding domain VP1979 PF00360 Phytochrome region VP1979 PF01590 GAF domain VP1979 PF00990 Diguanylate cyclase, GGDEF domain VP1979 PF00563 EAL domain VP1980 PF04055 Radical SAM superfamily VP1980 PF08497 Radical SAM N-terminal VP1980 PF11842 Domain of unknown function (DUF3362) VP1981 PF00672 HAMP domain VP1981 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP1983 PF00072 Response regulator receiver domain VP1983 PF00486 Transcriptional regulatory protein, C terminal VP1984 PF00512 His Kinase A (phospho-acceptor) domain VP1984 PF00672 HAMP domain VP1984 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP1988 PF03466 LysR substrate binding domain VP1988 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP1989 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP1989 PF00529 HlyD membrane-fusion protein of T1SS VP1991 PF01717 Cobalamin-independent synthase, Catalytic domain VP1991 PF08267 Cobalamin-independent synthase, N-terminal domain VP1993 PF12833 Helix-turn-helix domain VP1993 PF02311 AraC-like ligand binding domain VP1994 PF00857 Isochorismatase family VP1995 PF12704 MacB-like periplasmic core domain VP1995 PF02687 FtsX-like permease family VP1995 PF00005 ABC transporter VP1996 PF00005 ABC transporter VP1996 PF12704 MacB-like periplasmic core domain VP1996 PF02687 FtsX-like permease family VP1997 PF02687 FtsX-like permease family VP1997 PF12704 MacB-like periplasmic core domain VP1997 PF00005 ABC transporter VP1999 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP2002 PF05958 tRNA (Uracil-5-)-methyltransferase VP2002 PF01938 TRAM domain VP2005 PF00085 Thioredoxin VP2006 PF11412 Disulphide bond corrector protein DsbC VP2006 PF02683 Cytochrome C biogenesis protein transmembrane region VP2008 PF03466 LysR substrate binding domain VP2008 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP2009 PF00072 Response regulator receiver domain VP2009 PF00196 Bacterial regulatory proteins, luxR family VP2010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP2010 PF00512 His Kinase A (phospho-acceptor) domain VP2011 PF13247 4Fe-4S dicluster domain VP2013 PF03916 Polysulphide reductase, NrfD VP2014 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VP2014 PF01568 Molydopterin dinucleotide binding domain VP2014 PF00384 Molybdopterin oxidoreductase VP2015 PF00034 Cytochrome c VP2016 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VP2017 PF04403 Paraquat-inducible protein A VP2018 PF02470 MlaD protein VP2020 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VP2022 PF00535 Glycosyl transferase family 2 VP2023 PF01370 NAD dependent epimerase/dehydratase family VP2025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP2026 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VP2027 PF18073 Rubredoxin metal binding domain VP2028 PF06305 Lipopolysaccharide assembly protein A domain VP2029 PF00216 Bacterial DNA-binding protein VP2030 PF00575 S1 RNA binding domain VP2031 PF02224 Cytidylate kinase VP2032 PF01343 Peptidase family S49 VP2032 PF08496 Peptidase family S49 N-terminal VP2033 PF00106 short chain dehydrogenase VP2036 PF14579 Helix-hairpin-helix motif VP2036 PF07733 Bacterial DNA polymerase III alpha NTPase domain VP2036 PF02811 PHP domain VP2036 PF01336 OB-fold nucleic acid binding domain VP2036 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VP2037 PF01584 CheW-like domain VP2037 PF00072 Response regulator receiver domain VP2038 PF00480 ROK family VP2039 PF00224 Pyruvate kinase, barrel domain VP2039 PF02887 Pyruvate kinase, alpha/beta domain VP2040 PF01734 Patatin-like phospholipase VP2043 PF00209 Sodium:neurotransmitter symporter family VP2046 PF00367 phosphotransferase system, EIIB VP2046 PF02378 Phosphotransferase system, EIIC VP2047 PF01026 TatD related DNase VP2048 PF09115 DNA polymerase III, delta subunit, C terminal VP2049 PF02223 Thymidylate kinase VP2050 PF02618 YceG-like family VP2051 PF01063 Amino-transferase class IV VP2052 PF02801 Beta-ketoacyl synthase, C-terminal domain VP2052 PF00109 Beta-ketoacyl synthase, N-terminal domain VP2053 PF00550 Phosphopantetheine attachment site VP2055 PF00698 Acyl transferase domain VP2056 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VP2056 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VP2057 PF02504 Fatty acid synthesis protein VP2058 PF01783 Ribosomal L32p protein family VP2059 PF02620 Large ribosomal RNA subunit accumulation protein YceD VP2060 PF02545 Maf-like protein VP2061 PF01479 S4 domain VP2061 PF00849 RNA pseudouridylate synthase VP2062 PF10150 Ribonuclease E/G family VP2062 PF12111 Polyribonucleotide phosphorylase C terminal VP2062 PF00575 S1 RNA binding domain VP2063 PF00916 Sulfate permease family VP2063 PF01740 STAS domain VP2064 PF01451 Low molecular weight phosphotyrosine protein phosphatase VP2065 PF12557 Cob(I)alamin adenosyltransferase N terminal VP2065 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VP2067 PF00485 Phosphoribulokinase / Uridine kinase family VP2068 PF10609 NUBPL iron-transfer P-loop NTPase VP2069 PF01588 Putative tRNA binding domain VP2069 PF09334 tRNA synthetases class I (M) VP2071 PF07840 FadR C-terminal domain VP2071 PF00392 Bacterial regulatory proteins, gntR family VP2072 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VP2073 PF02600 Disulfide bond formation protein DsbB VP2074 PF07517 SecA DEAD-like domain VP2074 PF07516 SecA Wing and Scaffold domain VP2074 PF02810 SEC-C motif VP2074 PF01043 SecA preprotein cross-linking domain VP2075 PF01207 Dihydrouridine synthase (Dus) VP2076 PF00072 Response regulator receiver domain VP2076 PF00990 Diguanylate cyclase, GGDEF domain VP2077 PF02903 Alpha amylase, N-terminal ig-like domain VP2077 PF00128 Alpha amylase, catalytic domain VP2078 PF00005 ABC transporter VP2079 PF02653 Branched-chain amino acid transport system / permease component VP2081 PF04217 Protein of unknown function, DUF412 VP2082 PF00871 Acetokinase family VP2083 PF01515 Phosphate acetyl/butaryl transferase VP2083 PF07085 DRTGG domain VP2084 PF13194 Domain of unknown function (DUF4010) VP2086 PF13409 Glutathione S-transferase, N-terminal domain VP2087 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP2087 PF00005 ABC transporter VP2088 PF00005 ABC transporter VP2088 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP2089 PF12911 N-terminal TM domain of oligopeptide transport permease C VP2089 PF00528 Binding-protein-dependent transport system inner membrane component VP2090 PF00528 Binding-protein-dependent transport system inner membrane component VP2091 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP2092 PF02391 MoaE protein VP2093 PF02597 ThiS family VP2094 PF01967 MoaC family VP2095 PF00994 Probable molybdopterin binding domain VP2096 PF06463 Molybdenum Cofactor Synthesis C VP2096 PF04055 Radical SAM superfamily VP2097 PF01933 Uncharacterised protein family UPF0052 VP2098 PF01627 Hpt domain VP2099 PF02954 Bacterial regulatory protein, Fis family VP2099 PF00072 Response regulator receiver domain VP2099 PF00158 Sigma-54 interaction domain VP2100 PF02151 UvrB/uvrC motif VP2100 PF12344 Ultra-violet resistance protein B VP2100 PF17757 UvrB interaction domain VP2100 PF04851 Type III restriction enzyme, res subunit VP2100 PF00271 Helicase conserved C-terminal domain VP2102 PF02508 Rnf-Nqr subunit, membrane protein VP2103 PF04060 Putative Fe-S cluster VP2104 PF12838 4Fe-4S dicluster domain VP2104 PF10531 SLBB domain VP2104 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VP2104 PF13375 RnfC Barrel sandwich hybrid domain VP2105 PF03116 NQR2, RnfD, RnfE family VP2106 PF04205 FMN-binding domain VP2107 PF02508 Rnf-Nqr subunit, membrane protein VP2108 PF10576 Iron-sulfur binding domain of endonuclease III VP2108 PF00633 Helix-hairpin-helix motif VP2108 PF00730 HhH-GPD superfamily base excision DNA repair protein VP2109 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VP2110 PF10952 Protein of unknown function (DUF2753) VP2111 PF00691 OmpA family VP2111 PF18393 MotY N-terminal domain VP2114 PF00929 Exonuclease VP2115 PF13726 Na+-H+ antiporter family VP2115 PF03553 Na+/H+ antiporter family VP2117 PF00462 Glutaredoxin VP2118 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VP2118 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VP2121 PF00171 Aldehyde dehydrogenase family VP2121 PF00465 Iron-containing alcohol dehydrogenase VP2122 PF01914 MarC family integral membrane protein VP2123 PF00027 Cyclic nucleotide-binding domain VP2123 PF00520 Ion transport protein VP2124 PF02774 Semialdehyde dehydrogenase, dimerisation domain VP2124 PF01118 Semialdehyde dehydrogenase, NAD binding domain VP2125 PF03553 Na+/H+ antiporter family VP2128 PF04245 37-kD nucleoid-associated bacterial protein VP2129 PF07208 Protein of unknown function (DUF1414) VP2130 PF11893 Domain of unknown function (DUF3413) VP2130 PF00884 Sulfatase VP2131 PF00589 Phage integrase family VP2131 PF14659 Phage integrase, N-terminal SAM-like domain VP2145 PF00850 Histone deacetylase domain VP2146 PF00106 short chain dehydrogenase VP2149 PF01131 DNA topoisomerase VP2149 PF01751 Toprim domain VP2150 PF00881 Nitroreductase family VP2151 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP2151 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VP2152 PF01343 Peptidase family S49 VP2153 PF17763 Glutaminase/Asparaginase C-terminal domain VP2153 PF00710 Asparaginase, N-terminal VP2154 PF07023 Protein of unknown function (DUF1315) VP2156 PF01641 SelR domain VP2157 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VP2157 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VP2158 PF01263 Aldose 1-epimerase VP2159 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP2159 PF02743 Cache domain VP2159 PF00672 HAMP domain VP2160 PF13847 Methyltransferase domain VP2163 PF00245 Alkaline phosphatase VP2166 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VP2167 PF03992 Antibiotic biosynthesis monooxygenase VP2168 PF00924 Mechanosensitive ion channel VP2168 PF05552 Conserved TM helix VP2169 PF03692 Putative zinc- or iron-chelating domain VP2170 PF04226 Transglycosylase associated protein VP2171 PF03692 Putative zinc- or iron-chelating domain VP2173 PF03313 Serine dehydratase alpha chain VP2174 PF01042 Endoribonuclease L-PSP VP2176 PF00230 Major intrinsic protein VP2177 PF13662 Toprim domain VP2177 PF02132 RecR protein VP2178 PF02575 YbaB/EbfC DNA-binding family VP2179 PF12170 DNA polymerase III tau subunit V interacting with alpha VP2179 PF12169 DNA polymerase III subunits gamma and tau domain III VP2179 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VP2180 PF00156 Phosphoribosyl transferase domain VP2181 PF04304 Protein of unknown function (DUF454) VP2183 PF00072 Response regulator receiver domain VP2184 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP2184 PF03466 LysR substrate binding domain VP2185 PF00156 Phosphoribosyl transferase domain VP2186 PF02674 Colicin V production protein VP2187 PF05036 Sporulation related domain VP2188 PF08245 Mur ligase middle domain VP2188 PF02875 Mur ligase family, glutamate ligase domain VP2189 PF17848 Acetyl-coA carboxylase zinc finger domain VP2189 PF01039 Carboxyl transferase domain VP2190 PF01416 tRNA pseudouridine synthase VP2192 PF01118 Semialdehyde dehydrogenase, NAD binding domain VP2192 PF02774 Semialdehyde dehydrogenase, dimerisation domain VP2193 PF11890 Domain of unknown function (DUF3410) VP2193 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VP2193 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VP2194 PF02801 Beta-ketoacyl synthase, C-terminal domain VP2194 PF00109 Beta-ketoacyl synthase, N-terminal domain VP2195 PF01266 FAD dependent oxidoreductase VP2195 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VP2197 PF03358 NADPH-dependent FMN reductase VP2198 PF08891 YfcL protein VP2199 PF04315 Elongation factor P hydroxylase VP2201 PF03458 UPF0126 domain VP2202 PF01264 Chorismate synthase VP2203 PF05175 Methyltransferase small domain VP2204 PF01713 Smr domain VP2205 PF00300 Histidine phosphatase superfamily (branch 1) VP2206 PF16187 Middle or third domain of peptidase_M16 VP2206 PF05193 Peptidase M16 inactive domain VP2206 PF00675 Insulinase (Peptidase family M16) VP2208 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VP2208 PF00378 Enoyl-CoA hydratase/isomerase VP2208 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VP2209 PF02803 Thiolase, C-terminal domain VP2209 PF00108 Thiolase, N-terminal domain VP2210 PF04542 Sigma-70 region 2 VP2210 PF08281 Sigma-70, region 4 VP2212 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VP2213 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VP2214 PF04333 MlaA lipoprotein VP2216 PF03918 Cytochrome C biogenesis protein VP2217 PF08534 Redoxin VP2218 PF01578 Cytochrome C assembly protein VP2218 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VP2219 PF03100 CcmE VP2220 PF04995 Heme exporter protein D (CcmD) VP2221 PF01578 Cytochrome C assembly protein VP2222 PF03379 CcmB protein VP2223 PF00005 ABC transporter VP2225 PF01584 CheW-like domain VP2227 PF13614 AAA domain VP2228 PF00072 Response regulator receiver domain VP2228 PF01339 CheB methylesterase VP2229 PF01627 Hpt domain VP2229 PF01584 CheW-like domain VP2229 PF00072 Response regulator receiver domain VP2229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP2229 PF02895 Signal transducing histidine kinase, homodimeric domain VP2230 PF04344 Chemotaxis phosphatase, CheZ VP2231 PF00072 Response regulator receiver domain VP2232 PF04539 Sigma-70 region 3 VP2232 PF04545 Sigma-70, region 4 VP2232 PF04542 Sigma-70 region 2 VP2233 PF10609 NUBPL iron-transfer P-loop NTPase VP2234 PF00448 SRP54-type protein, GTPase domain VP2235 PF00771 FHIPEP family VP2236 PF01312 FlhB HrpN YscU SpaS Family VP2237 PF01311 Bacterial export proteins, family 1 VP2238 PF01313 Bacterial export proteins, family 3 VP2239 PF00813 FliP family VP2240 PF04347 Flagellar biosynthesis protein, FliO VP2241 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VP2242 PF02154 Flagellar motor switch protein FliM VP2242 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VP2246 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VP2246 PF18269 T3SS EscN ATPase C-terminal domain VP2248 PF14841 FliG middle domain VP2248 PF14842 FliG N-terminal domain VP2248 PF01706 FliG C-terminal domain VP2249 PF01514 Secretory protein of YscJ/FliF family VP2249 PF08345 Flagellar M-ring protein C-terminal VP2250 PF02049 Flagellar hook-basal body complex protein FliE VP2251 PF02954 Bacterial regulatory protein, Fis family VP2251 PF00072 Response regulator receiver domain VP2251 PF00158 Sigma-54 interaction domain VP2252 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP2252 PF00512 His Kinase A (phospho-acceptor) domain VP2252 PF13188 PAS domain VP2253 PF00158 Sigma-54 interaction domain VP2253 PF02954 Bacterial regulatory protein, Fis family VP2253 PF06490 Flagellar regulatory protein FleQ VP2254 PF02561 Flagellar protein FliS VP2256 PF02465 Flagellar hook-associated protein 2 N-terminus VP2256 PF07196 Flagellin hook IN motif VP2256 PF07195 Flagellar hook-associated protein 2 C-terminus VP2257 PF03646 FlaG protein VP2258 PF07196 Flagellin hook IN motif VP2258 PF00700 Bacterial flagellin C-terminal helical region VP2258 PF00669 Bacterial flagellin N-terminal helical region VP2259 PF00700 Bacterial flagellin C-terminal helical region VP2259 PF07196 Flagellin hook IN motif VP2259 PF00669 Bacterial flagellin N-terminal helical region VP2261 PF00700 Bacterial flagellin C-terminal helical region VP2261 PF07196 Flagellin hook IN motif VP2261 PF00669 Bacterial flagellin N-terminal helical region VP2262 PF04261 Dyp-type peroxidase family VP2263 PF11143 Protein of unknown function (DUF2919) VP2268 PF03960 ArsC family VP2269 PF01546 Peptidase family M20/M25/M40 VP2269 PF07687 Peptidase dimerisation domain VP2272 PF06804 NlpB/DapX lipoprotein VP2273 PF00701 Dihydrodipicolinate synthetase family VP2274 PF01842 ACT domain VP2275 PF00578 AhpC/TSA family VP2276 PF01594 AI-2E family transporter VP2278 PF13181 Tetratricopeptide repeat VP2278 PF01435 Peptidase family M48 VP2279 PF03960 ArsC family VP2280 PF03358 NADPH-dependent FMN reductase VP2283 PF00860 Permease family VP2285 PF00586 AIR synthase related protein, N-terminal domain VP2285 PF02769 AIR synthase related protein, C-terminal domain VP2286 PF00551 Formyl transferase VP2287 PF13230 Glutamine amidotransferases class-II VP2288 PF13580 SIS domain VP2289 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VP2289 PF02770 Acyl-CoA dehydrogenase, middle domain VP2289 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VP2289 PF09317 Domain of unknown function (DUF1974) VP2290 PF01740 STAS domain VP2290 PF00916 Sulfate permease family VP2292 PF00929 Exonuclease VP2293 PF00075 RNase H VP2294 PF08241 Methyltransferase domain VP2295 PF16123 Hydroxyacylglutathione hydrolase C-terminus VP2295 PF00753 Metallo-beta-lactamase superfamily VP2296 PF01464 Transglycosylase SLT domain VP2296 PF01476 LysM domain VP2298 PF03372 Endonuclease/Exonuclease/phosphatase family VP2299 PF00543 Nitrogen regulatory protein P-II VP2300 PF00034 Cytochrome c VP2301 PF11734 TilS substrate C-terminal domain VP2301 PF09179 TilS substrate binding domain VP2301 PF01171 PP-loop family VP2302 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VP2303 PF01336 OB-fold nucleic acid binding domain VP2303 PF02811 PHP domain VP2303 PF14579 Helix-hairpin-helix motif VP2303 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VP2303 PF07733 Bacterial DNA polymerase III alpha NTPase domain VP2304 PF01351 Ribonuclease HII VP2305 PF02684 Lipid-A-disaccharide synthetase VP2306 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VP2306 PF00132 Bacterial transferase hexapeptide (six repeats) VP2307 PF07977 FabA-like domain VP2308 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VP2308 PF00132 Bacterial transferase hexapeptide (six repeats) VP2309 PF03938 Outer membrane protein (OmpH-like) VP2310 PF01103 Surface antigen VP2310 PF07244 Surface antigen variable number repeat VP2311 PF17820 PDZ domain VP2311 PF02163 Peptidase family M50 VP2312 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VP2312 PF13288 DXP reductoisomerase C-terminal domain VP2312 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VP2314 PF01255 Putative undecaprenyl diphosphate synthase VP2315 PF01765 Ribosome recycling factor VP2316 PF00696 Amino acid kinase family VP2317 PF00889 Elongation factor TS VP2318 PF00318 Ribosomal protein S2 VP2319 PF00557 Metallopeptidase family M24 VP2320 PF01966 HD domain VP2320 PF01909 Nucleotidyltransferase domain VP2320 PF01842 ACT domain VP2320 PF08335 GlnD PII-uridylyltransferase VP2321 PF11944 Protein of unknown function (DUF3461) VP2322 PF00849 RNA pseudouridylate synthase VP2323 PF04287 tRNA pseudouridine synthase C VP2328 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VP2329 PF03806 AbgT putative transporter family VP2331 PF01197 Ribosomal protein L31 VP2332 PF18389 TrmO C-terminal domain VP2332 PF01980 tRNA-methyltransferase O VP2333 PF03129 Anticodon binding domain VP2333 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VP2333 PF04073 Aminoacyl-tRNA editing domain VP2335 PF06786 Uncharacterised protein family (UPF0253) VP2337 PF00209 Sodium:neurotransmitter symporter family VP2340 PF09382 RQC domain VP2340 PF00570 HRDC domain VP2340 PF16124 RecQ zinc-binding VP2340 PF00271 Helicase conserved C-terminal domain VP2340 PF00270 DEAD/DEAH box helicase VP2341 PF01272 Transcription elongation factor, GreA/GreB, C-term VP2341 PF03449 Transcription elongation factor, N-terminal VP2342 PF11799 impB/mucB/samB family C-terminal domain VP2342 PF11798 IMS family HHH motif VP2342 PF00817 impB/mucB/samB family VP2345 PF02424 ApbE family VP2346 PF00970 Oxidoreductase FAD-binding domain VP2346 PF00175 Oxidoreductase NAD-binding domain VP2346 PF00111 2Fe-2S iron-sulfur cluster binding domain VP2347 PF02508 Rnf-Nqr subunit, membrane protein VP2348 PF02508 Rnf-Nqr subunit, membrane protein VP2349 PF04205 FMN-binding domain VP2350 PF03116 NQR2, RnfD, RnfE family VP2351 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VP2351 PF11973 NQRA C-terminal domain VP2352 PF01722 BolA-like protein VP2353 PF05175 Methyltransferase small domain VP2354 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VP2354 PF03923 Uncharacterized lipoprotein VP2355 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VP2356 PF07690 Major Facilitator Superfamily VP2358 PF04545 Sigma-70, region 4 VP2358 PF04542 Sigma-70 region 2 VP2362 PF03502 Nucleoside-specific channel-forming protein, Tsx VP2363 PF08546 Ketopantoate reductase PanE/ApbA C terminal VP2363 PF02558 Ketopantoate reductase PanE/ApbA VP2364 PF01965 DJ-1/PfpI family VP2365 PF00266 Aminotransferase class-V VP2366 PF00990 Diguanylate cyclase, GGDEF domain VP2366 PF17158 Membrane-associated sensor, integral membrane domain VP2367 PF02657 Fe-S metabolism associated domain VP2368 PF00899 ThiF family VP2369 PF06725 3D domain VP2369 PF03562 MltA specific insert domain VP2371 PF00696 Amino acid kinase family VP2371 PF00583 Acetyltransferase (GNAT) family VP2373 PF13538 UvrD-like helicase C-terminal domain VP2374 PF12705 PD-(D/E)XK nuclease superfamily VP2374 PF00580 UvrD/REP helicase N-terminal domain VP2374 PF13361 UvrD-like helicase C-terminal domain VP2375 PF17946 RecC C-terminal domain VP2376 PF11893 Domain of unknown function (DUF3413) VP2376 PF00884 Sulfatase VP2378 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP2378 PF03466 LysR substrate binding domain VP2379 PF07130 YebG protein VP2380 PF14602 Hexapeptide repeat of succinyl-transferase VP2380 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VP2381 PF03009 Glycerophosphoryl diester phosphodiesterase family VP2382 PF07690 Major Facilitator Superfamily VP2385 PF00230 Major intrinsic protein VP2386 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VP2386 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VP2387 PF00455 DeoR C terminal sensor domain VP2387 PF08220 DeoR-like helix-turn-helix domain VP2388 PF01266 FAD dependent oxidoreductase VP2388 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VP2389 PF01544 CorA-like Mg2+ transporter protein VP2392 PF01588 Putative tRNA binding domain VP2393 PF00356 Bacterial regulatory proteins, lacI family VP2396 PF00356 Bacterial regulatory proteins, lacI family VP2397 PF01263 Aldose 1-epimerase VP2398 PF10509 Galactokinase galactose-binding signature VP2398 PF08544 GHMP kinases C terminal VP2398 PF00288 GHMP kinases N terminal domain VP2399 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VP2399 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VP2400 PF16363 GDP-mannose 4,6 dehydratase VP2402 PF00356 Bacterial regulatory proteins, lacI family VP2403 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VP2403 PF00703 Glycosyl hydrolases family 2 VP2403 PF02929 Beta galactosidase small chain VP2403 PF02837 Glycosyl hydrolases family 2, sugar binding domain VP2403 PF16353 Domain of unknown function(DUF4981) VP2404 PF04074 YhcH/YjgK/YiaL VP2405 PF13520 Amino acid permease VP2406 PF03466 LysR substrate binding domain VP2406 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP2412 PF00437 Type II/IV secretion system protein VP2419 PF13629 Pilus formation protein N terminal region VP2419 PF00263 Bacterial type II and III secretion system protein VP2419 PF04972 BON domain VP2424 PF02805 Metal binding domain of Ada VP2424 PF12833 Helix-turn-helix domain VP2425 PF00501 AMP-binding enzyme VP2427 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP2427 PF03466 LysR substrate binding domain VP2428 PF00009 Elongation factor Tu GTP binding domain VP2428 PF03764 Elongation factor G, domain IV VP2428 PF14492 Elongation Factor G, domain II VP2428 PF00679 Elongation factor G C-terminus VP2428 PF03144 Elongation factor Tu domain 2 VP2429 PF18073 Rubredoxin metal binding domain VP2431 PF18429 Domain of unknown function (DUF5609) VP2433 PF01048 Phosphorylase superfamily VP2434 PF01676 Metalloenzyme superfamily VP2435 PF02885 Glycosyl transferase family, helical bundle domain VP2435 PF00591 Glycosyl transferase family, a/b domain VP2435 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VP2436 PF01791 DeoC/LacD family aldolase VP2437 PF01773 Na+ dependent nucleoside transporter N-terminus VP2437 PF07670 Nucleoside recognition VP2437 PF07662 Na+ dependent nucleoside transporter C-terminus VP2439 PF01026 TatD related DNase VP2440 PF00009 Elongation factor Tu GTP binding domain VP2440 PF03144 Elongation factor Tu domain 2 VP2440 PF16658 Class II release factor RF3, C-terminal domain VP2444 PF13508 Acetyltransferase (GNAT) domain VP2445 PF02036 SCP-2 sterol transfer family VP2446 PF03707 Bacterial signalling protein N terminal repeat VP2446 PF00563 EAL domain VP2446 PF00990 Diguanylate cyclase, GGDEF domain VP2447 PF01136 Peptidase family U32 VP2448 PF01136 Peptidase family U32 VP2449 PF01554 MatE VP2451 PF13181 Tetratricopeptide repeat VP2451 PF07719 Tetratricopeptide repeat VP2452 PF01138 3' exoribonuclease family, domain 1 VP2452 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VP2452 PF00013 KH domain VP2452 PF00575 S1 RNA binding domain VP2452 PF03725 3' exoribonuclease family, domain 2 VP2453 PF00312 Ribosomal protein S15 VP2454 PF09157 Pseudouridine synthase II TruB, C-terminal VP2454 PF16198 tRNA pseudouridylate synthase B C-terminal domain VP2454 PF01509 TruB family pseudouridylate synthase (N terminal domain) VP2455 PF02033 Ribosome-binding factor A VP2456 PF00009 Elongation factor Tu GTP binding domain VP2456 PF11987 Translation-initiation factor 2 VP2456 PF08364 Bacterial translation initiation factor IF-2 associated region VP2456 PF04760 Translation initiation factor IF-2, N-terminal region VP2457 PF00575 S1 RNA binding domain VP2457 PF08529 NusA N-terminal domain VP2457 PF13184 NusA-like KH domain VP2458 PF02576 RimP N-terminal domain VP2458 PF17384 RimP C-terminal SH3 domain VP2460 PF03840 Preprotein translocase SecG subunit VP2461 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VP2461 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VP2461 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VP2461 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VP2462 PF00809 Pterin binding enzyme VP2463 PF01434 Peptidase family M41 VP2463 PF00004 ATPase family associated with various cellular activities (AAA) VP2463 PF17862 AAA+ lid domain VP2463 PF06480 FtsH Extracellular VP2464 PF01728 FtsJ-like methyltransferase VP2465 PF01985 CRS1 / YhbY (CRM) domain VP2466 PF01272 Transcription elongation factor, GreA/GreB, C-term VP2466 PF03449 Transcription elongation factor, N-terminal VP2467 PF13609 Gram-negative porin VP2468 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VP2470 PF00579 tRNA synthetases class I (W and Y) VP2471 PF01551 Peptidase family M23 VP2471 PF08525 Opacity-associated protein A N-terminal motif VP2471 PF01476 LysM domain VP2472 PF00873 AcrB/AcrD/AcrF family VP2474 PF01521 Iron-sulphur cluster biosynthesis VP2475 PF00202 Aminotransferase class-III VP2476 PF01594 AI-2E family transporter VP2477 PF05175 Methyltransferase small domain VP2477 PF08468 Methyltransferase small domain N-terminal VP2478 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP2478 PF00072 Response regulator receiver domain VP2478 PF00512 His Kinase A (phospho-acceptor) domain VP2478 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP2479 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP2480 PF00528 Binding-protein-dependent transport system inner membrane component VP2481 PF00528 Binding-protein-dependent transport system inner membrane component VP2481 PF12911 N-terminal TM domain of oligopeptide transport permease C VP2482 PF00005 ABC transporter VP2482 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP2483 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP2483 PF00005 ABC transporter VP2485 PF01869 BadF/BadG/BcrA/BcrD ATPase family VP2486 PF02838 Glycosyl hydrolase family 20, domain 2 VP2486 PF00728 Glycosyl hydrolase family 20, catalytic domain VP2487 PF06165 Glycosyltransferase family 36 VP2487 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VP2488 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VP2488 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VP2488 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VP2488 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VP2489 PF00005 ABC transporter VP2489 PF08402 TOBE domain VP2491 PF13416 Bacterial extracellular solute-binding protein VP2492 PF00909 Ammonium Transporter Family VP2493 PF00543 Nitrogen regulatory protein P-II VP2494 PF06062 Uncharacterised protein family (UPF0231) VP2495 PF06434 Aconitate hydratase 2 N-terminus VP2495 PF00330 Aconitase family (aconitate hydratase) VP2495 PF11791 Aconitate B N-terminal domain VP2496 PF01734 Patatin-like phospholipase VP2497 PF14814 Bifunctional transglycosylase second domain VP2497 PF00905 Penicillin binding protein transpeptidase domain VP2497 PF00912 Transglycosylase VP2498 PF00270 DEAD/DEAH box helicase VP2498 PF04408 Helicase associated domain (HA2) VP2498 PF00271 Helicase conserved C-terminal domain VP2498 PF08482 ATP-dependent helicase C-terminal VP2499 PF03749 Sugar fermentation stimulation protein RE domain VP2499 PF17746 SfsA N-terminal OB domain VP2500 PF01258 Prokaryotic dksA/traR C4-type zinc finger VP2502 PF00749 tRNA synthetases class I (E and Q), catalytic domain VP2504 PF12626 Polymerase A arginine-rich C-terminus VP2504 PF01743 Poly A polymerase head domain VP2504 PF12627 Probable RNA and SrmB- binding site of polymerase A VP2505 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VP2506 PF02548 Ketopantoate hydroxymethyltransferase VP2507 PF02569 Pantoate-beta-alanine ligase VP2509 PF03279 Bacterial lipid A biosynthesis acyltransferase VP2510 PF01061 ABC-2 type transporter VP2511 PF00005 ABC transporter VP2513 PF00916 Sulfate permease family VP2513 PF01740 STAS domain VP2514 PF00484 Carbonic anhydrase VP2515 PF00156 Phosphoribosyl transferase domain VP2516 PF00440 Bacterial regulatory proteins, tetR family VP2517 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VP2517 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP2518 PF02817 e3 binding domain VP2518 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VP2518 PF00364 Biotin-requiring enzyme VP2519 PF17831 Pyruvate dehydrogenase E1 component middle domain VP2519 PF00456 Transketolase, thiamine diphosphate binding domain VP2520 PF00392 Bacterial regulatory proteins, gntR family VP2520 PF07729 FCD domain VP2521 PF01510 N-acetylmuramoyl-L-alanine amidase VP2522 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VP2522 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VP2523 PF07963 Prokaryotic N-terminal methylation motif VP2523 PF00114 Pilin (bacterial filament) VP2524 PF00437 Type II/IV secretion system protein VP2524 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VP2525 PF00482 Type II secretion system (T2SS), protein F VP2526 PF01478 Type IV leader peptidase family VP2526 PF06750 Bacterial Peptidase A24 N-terminal domain VP2527 PF01121 Dephospho-CoA kinase VP2528 PF07072 Cell division protein VP2529 PF03884 DNA gyrase inhibitor YacG VP2530 PF01245 Ribosomal protein L19 VP2531 PF01746 tRNA (Guanine-1)-methyltransferase VP2532 PF05239 PRC-barrel domain VP2532 PF01782 RimM N-terminal domain VP2533 PF00886 Ribosomal protein S16 VP2534 PF00448 SRP54-type protein, GTPase domain VP2534 PF02978 Signal peptide binding domain VP2534 PF02881 SRP54-type protein, helical bundle domain VP2535 PF01578 Cytochrome C assembly protein VP2536 PF00571 CBS domain VP2536 PF03471 Transporter associated domain VP2536 PF01595 Cyclin M transmembrane N-terminal domain VP2537 PF02664 S-Ribosylhomocysteinase (LuxS) VP2539 PF04262 Glutamate-cysteine ligase VP2540 PF05193 Peptidase M16 inactive domain VP2540 PF00675 Insulinase (Peptidase family M16) VP2541 PF09335 SNARE associated Golgi protein VP2542 PF08240 Alcohol dehydrogenase GroES-like domain VP2542 PF00107 Zinc-binding dehydrogenase VP2543 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VP2544 PF00682 HMGL-like VP2544 PF00364 Biotin-requiring enzyme VP2544 PF02436 Conserved carboxylase domain VP2545 PF04277 Oxaloacetate decarboxylase, gamma chain VP2546 PF02599 Global regulator protein family VP2547 PF01842 ACT domain VP2547 PF00696 Amino acid kinase family VP2547 PF13840 ACT domain VP2548 PF01411 tRNA synthetases class II (A) VP2548 PF02272 DHHA1 domain VP2548 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VP2549 PF02631 RecX family VP2550 PF00154 recA bacterial DNA recombination protein VP2551 PF02464 Competence-damaged protein VP2552 PF01624 MutS domain I VP2552 PF05192 MutS domain III VP2552 PF05188 MutS domain II VP2552 PF00488 MutS domain V VP2552 PF05190 MutS family domain IV VP2553 PF04542 Sigma-70 region 2 VP2553 PF04545 Sigma-70, region 4 VP2553 PF00140 Sigma-70 factor, region 1.2 VP2553 PF04539 Sigma-70 region 3 VP2554 PF01476 LysM domain VP2554 PF01551 Peptidase family M23 VP2556 PF01975 Survival protein SurE VP2557 PF01142 tRNA pseudouridine synthase D (TruD) VP2558 PF02542 YgbB family VP2559 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VP2560 PF04977 Septum formation initiator VP2561 PF00113 Enolase, C-terminal TIM barrel domain VP2561 PF03952 Enolase, N-terminal domain VP2562 PF00117 Glutamine amidotransferase class-I VP2562 PF06418 CTP synthase N-terminus VP2563 PF03819 MazG nucleotide pyrophosphohydrolase domain VP2564 PF13291 ACT domain VP2564 PF04607 Region found in RelA / SpoT proteins VP2564 PF02824 TGS domain VP2566 PF05958 tRNA (Uracil-5-)-methyltransferase VP2566 PF01938 TRAM domain VP2567 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP2567 PF00512 His Kinase A (phospho-acceptor) domain VP2567 PF01627 Hpt domain VP2567 PF00672 HAMP domain VP2567 PF00072 Response regulator receiver domain VP2567 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VP2568 PF01648 4'-phosphopantetheinyl transferase superfamily VP2569 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VP2570 PF02565 Recombination protein O C terminal VP2570 PF11967 Recombination protein O N terminal VP2571 PF07650 KH domain VP2571 PF01926 50S ribosome-binding GTPase VP2572 PF00035 Double-stranded RNA binding motif VP2572 PF14622 Ribonuclease-III-like VP2573 PF10502 Signal peptidase, peptidase S26 VP2574 PF06421 GTP-binding protein LepA C-terminus VP2574 PF03144 Elongation factor Tu domain 2 VP2574 PF00679 Elongation factor G C-terminus VP2574 PF00009 Elongation factor Tu GTP binding domain VP2576 PF03888 MucB/RseB N-terminal domain VP2576 PF17188 MucB/RseB C-terminal domain VP2577 PF03873 Anti sigma-E protein RseA, C-terminal domain VP2577 PF03872 Anti sigma-E protein RseA, N-terminal domain VP2578 PF08281 Sigma-70, region 4 VP2578 PF04542 Sigma-70 region 2 VP2580 PF02910 Fumarate reductase flavoprotein C-term VP2580 PF00890 FAD binding domain VP2582 PF03937 Flavinator of succinate dehydrogenase VP2583 PF01571 Aminomethyltransferase folate-binding domain VP2586 PF01494 FAD binding domain VP2587 PF01494 FAD binding domain VP2588 PF03695 Uncharacterised protein family (UPF0149) VP2590 PF05164 Cell division protein ZapA VP2591 PF01812 5-formyltetrahydrofolate cyclo-ligase family VP2592 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VP2593 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VP2593 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VP2593 PF01842 ACT domain VP2594 PF04402 Protein of unknown function (DUF541) VP2595 PF03466 LysR substrate binding domain VP2595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP2596 PF01810 LysE type translocator VP2597 PF04073 Aminoacyl-tRNA editing domain VP2598 PF05552 Conserved TM helix VP2598 PF00924 Mechanosensitive ion channel VP2599 PF01116 Fructose-bisphosphate aldolase class-II VP2600 PF00162 Phosphoglycerate kinase VP2601 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VP2601 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VP2602 PF07715 TonB-dependent Receptor Plug Domain VP2602 PF00593 TonB dependent receptor VP2603 PF03466 LysR substrate binding domain VP2603 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP2605 PF00456 Transketolase, thiamine diphosphate binding domain VP2605 PF02780 Transketolase, C-terminal domain VP2605 PF02779 Transketolase, pyrimidine binding domain VP2606 PF00438 S-adenosylmethionine synthetase, N-terminal domain VP2606 PF02773 S-adenosylmethionine synthetase, C-terminal domain VP2606 PF02772 S-adenosylmethionine synthetase, central domain VP2608 PF17283 SprT-like zinc ribbon domain VP2608 PF10263 SprT-like family VP2609 PF04231 Endonuclease I VP2610 PF04452 RNA methyltransferase VP2611 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VP2611 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VP2612 PF02622 Uncharacterized ACR, COG1678 VP2613 PF03652 Holliday junction resolvase VP2614 PF00437 Type II/IV secretion system protein VP2615 PF00437 Type II/IV secretion system protein VP2616 PF01168 Alanine racemase, N-terminal domain VP2617 PF14748 Pyrroline-5-carboxylate reductase dimerisation VP2617 PF03807 NADP oxidoreductase coenzyme F420-dependent VP2618 PF02325 YGGT family VP2619 PF02594 Uncharacterised ACR, YggU family COG1872 VP2621 PF01725 Ham1 family VP2622 PF06969 HemN C-terminal domain VP2622 PF04055 Radical SAM superfamily VP2623 PF04960 Glutaminase VP2624 PF02086 D12 class N6 adenine-specific DNA methyltransferase VP2625 PF02390 Putative methyltransferase VP2626 PF14815 NUDIX domain VP2626 PF00730 HhH-GPD superfamily base excision DNA repair protein VP2626 PF00633 Helix-hairpin-helix motif VP2627 PF04362 Bacterial Fe(2+) trafficking VP2628 PF01464 Transglycosylase SLT domain VP2628 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VP2629 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP2629 PF17200 Single Cache domain 2 VP2629 PF00672 HAMP domain VP2630 PF00171 Aldehyde dehydrogenase family VP2631 PF00072 Response regulator receiver domain VP2632 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VP2632 PF00356 Bacterial regulatory proteins, lacI family VP2633 PF04794 YdjC-like protein VP2634 PF02056 Family 4 glycosyl hydrolase VP2634 PF11975 Family 4 glycosyl hydrolase C-terminal domain VP2635 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VP2636 PF02378 Phosphotransferase system, EIIC VP2637 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VP2638 PF01522 Polysaccharide deacetylase VP2639 PF00106 short chain dehydrogenase VP2640 PF10011 Predicted membrane protein (DUF2254) VP2642 PF03739 Lipopolysaccharide export system permease LptF/LptG VP2643 PF03739 Lipopolysaccharide export system permease LptF/LptG VP2644 PF00883 Cytosol aminopeptidase family, catalytic domain VP2644 PF02789 Cytosol aminopeptidase family, N-terminal domain VP2645 PF04364 DNA polymerase III chi subunit, HolC VP2646 PF08264 Anticodon-binding domain of tRNA VP2646 PF00133 tRNA synthetases class I (I, L, M and V) VP2646 PF10458 Valyl tRNA synthetase tRNA binding arm VP2648 PF00583 Acetyltransferase (GNAT) family VP2650 PF06877 Regulator of ribonuclease activity B VP2653 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VP2653 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VP2654 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VP2654 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VP2655 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VP2655 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VP2656 PF01042 Endoribonuclease L-PSP VP2657 PF01553 Acyltransferase VP2658 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VP2659 PF01722 BolA-like protein VP2661 PF05494 MlaC protein VP2662 PF02470 MlaD protein VP2663 PF02405 Permease MlaE VP2664 PF00005 ABC transporter VP2665 PF01699 Sodium/calcium exchanger protein VP2666 PF00571 CBS domain VP2666 PF01380 SIS domain VP2668 PF03968 OstA-like protein VP2669 PF00005 ABC transporter VP2669 PF12399 Branched-chain amino acid ATP-binding cassette transporter VP2670 PF04963 Sigma-54 factor, core binding domain VP2670 PF04552 Sigma-54, DNA binding domain VP2670 PF00309 Sigma-54 factor, Activator interacting domain (AID) VP2671 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VP2672 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VP2673 PF03668 P-loop ATPase protein family VP2674 PF00381 PTS HPr component phosphorylation site VP2675 PF00571 CBS domain VP2675 PF01769 Divalent cation transporter VP2675 PF03448 MgtE intracellular N domain VP2676 PF01523 Putative modulator of DNA gyrase VP2677 PF04751 Protein of unknown function (DUF615) VP2678 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VP2678 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VP2679 PF00849 RNA pseudouridylate synthase VP2682 PF00176 SNF2 family N-terminal domain VP2682 PF18337 RapA N-terminal Tudor like domain VP2682 PF18339 RapA N-terminal Tudor like domain 1 VP2682 PF00271 Helicase conserved C-terminal domain VP2682 PF12137 RNA polymerase recycling family C-terminal VP2683 PF13638 PIN domain VP2683 PF02562 PhoH-like protein VP2684 PF01523 Putative modulator of DNA gyrase VP2685 PF00795 Carbon-nitrogen hydrolase VP2686 PF13116 Protein of unknown function VP2686 PF13502 AsmA-like C-terminal region VP2687 PF10150 Ribonuclease E/G family VP2687 PF00575 S1 RNA binding domain VP2688 PF02545 Maf-like protein VP2689 PF04093 rod shape-determining protein MreD VP2690 PF04085 rod shape-determining protein MreC VP2698 PF07963 Prokaryotic N-terminal methylation motif VP2700 PF00482 Type II secretion system (T2SS), protein F VP2701 PF00437 Type II/IV secretion system protein VP2701 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VP2703 PF01471 Putative peptidoglycan binding domain VP2703 PF13401 AAA domain VP2704 PF00263 Bacterial type II and III secretion system protein VP2704 PF03958 Bacterial type II/III secretion system short domain VP2704 PF11741 AMIN domain VP2704 PF07660 Secretin and TonB N terminus short domain VP2708 PF00990 Diguanylate cyclase, GGDEF domain VP2708 PF00563 EAL domain VP2708 PF17157 Gammaproteobacterial periplasmic sensor domain VP2709 PF00436 Single-strand binding protein family VP2710 PF00196 Bacterial regulatory proteins, luxR family VP2711 PF00483 Nucleotidyl transferase VP2712 PF17755 UvrA DNA-binding domain VP2712 PF17760 UvrA interaction domain VP2712 PF00005 ABC transporter VP2714 PF00266 Aminotransferase class-V VP2715 PF01842 ACT domain VP2715 PF00696 Amino acid kinase family VP2717 PF02607 B12 binding domain VP2717 PF00809 Pterin binding enzyme VP2717 PF02310 B12 binding domain VP2717 PF02965 Vitamin B12 dependent methionine synthase, activation domain VP2717 PF02574 Homocysteine S-methyltransferase VP2718 PF00999 Sodium/hydrogen exchanger family VP2720 PF01507 Phosphoadenosine phosphosulfate reductase family VP2721 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VP2721 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VP2722 PF00667 FAD binding domain VP2722 PF00175 Oxidoreductase NAD-binding domain VP2722 PF00258 Flavodoxin VP2727 PF01207 Dihydrouridine synthase (Dus) VP2729 PF01475 Ferric uptake regulator family VP2731 PF00342 Phosphoglucose isomerase VP2732 PF01894 Uncharacterised protein family UPF0047 VP2734 PF00842 Alanine racemase, C-terminal domain VP2734 PF01168 Alanine racemase, N-terminal domain VP2735 PF00772 DnaB-like helicase N terminal domain VP2735 PF03796 DnaB-like helicase C terminal domain VP2737 PF01281 Ribosomal protein L9, N-terminal domain VP2737 PF03948 Ribosomal protein L9, C-terminal domain VP2738 PF01084 Ribosomal protein S18 VP2739 PF00436 Single-strand binding protein family VP2740 PF01250 Ribosomal protein S6 VP2741 PF00834 Ribulose-phosphate 3 epimerase family VP2742 PF02086 D12 class N6 adenine-specific DNA methyltransferase VP2744 PF01761 3-dehydroquinate synthase VP2745 PF01202 Shikimate kinase VP2746 PF03958 Bacterial type II/III secretion system short domain VP2746 PF07660 Secretin and TonB N terminus short domain VP2746 PF00263 Bacterial type II and III secretion system protein VP2746 PF11741 AMIN domain VP2747 PF04351 Pilus assembly protein, PilP VP2749 PF05137 Fimbrial assembly protein (PilN) VP2751 PF17092 Penicillin-binding protein OB-like domain VP2751 PF00912 Transglycosylase VP2751 PF00905 Penicillin binding protein transpeptidase domain VP2752 PF03466 LysR substrate binding domain VP2752 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP2753 PF00462 Glutaredoxin VP2753 PF08534 Redoxin VP2756 PF14698 Argininosuccinate lyase C-terminal VP2756 PF00206 Lyase VP2756 PF00583 Acetyltransferase (GNAT) family VP2757 PF00764 Arginosuccinate synthase VP2758 PF00696 Amino acid kinase family VP2759 PF01118 Semialdehyde dehydrogenase, NAD binding domain VP2759 PF02774 Semialdehyde dehydrogenase, dimerisation domain VP2760 PF07687 Peptidase dimerisation domain VP2760 PF01546 Peptidase family M20/M25/M40 VP2761 PF00311 Phosphoenolpyruvate carboxylase VP2763 PF02219 Methylenetetrahydrofolate reductase VP2764 PF00742 Homoserine dehydrogenase VP2764 PF03447 Homoserine dehydrogenase, NAD binding domain VP2764 PF00696 Amino acid kinase family VP2765 PF01053 Cys/Met metabolism PLP-dependent enzyme VP2766 PF01340 Met Apo-repressor, MetJ VP2767 PF00390 Malic enzyme, N-terminal domain VP2767 PF03949 Malic enzyme, NAD binding domain VP2768 PF00210 Ferritin-like domain VP2769 PF04324 BFD-like [2Fe-2S] binding domain VP2770 PF03144 Elongation factor Tu domain 2 VP2770 PF03143 Elongation factor Tu C-terminal domain VP2770 PF00009 Elongation factor Tu GTP binding domain VP2771 PF00679 Elongation factor G C-terminus VP2771 PF03144 Elongation factor Tu domain 2 VP2771 PF00009 Elongation factor Tu GTP binding domain VP2771 PF03764 Elongation factor G, domain IV VP2771 PF14492 Elongation Factor G, domain II VP2772 PF00177 Ribosomal protein S7p/S5e VP2773 PF00164 Ribosomal protein S12/S23 VP2774 PF04077 DsrH like protein VP2775 PF02635 DsrE/DsrF-like family VP2776 PF02635 DsrE/DsrF-like family VP2777 PF08348 YheO-like PAS domain VP2777 PF13309 HTH domain VP2778 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VP2778 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VP2780 PF04102 SlyX VP2781 PF01112 Asparaginase VP2783 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VP2785 PF02254 TrkA-N domain VP2785 PF00999 Sodium/hydrogen exchanger family VP2786 PF02525 Flavodoxin-like fold VP2788 PF12848 ABC transporter VP2788 PF00005 ABC transporter VP2790 PF00561 alpha/beta hydrolase fold VP2791 PF06794 Uncharacterised protein family (UPF0270) VP2792 PF00485 Phosphoribulokinase / Uridine kinase family VP2793 PF13545 Crp-like helix-turn-helix domain VP2793 PF00027 Cyclic nucleotide-binding domain VP2795 PF00171 Aldehyde dehydrogenase family VP2796 PF04958 Arginine N-succinyltransferase beta subunit VP2797 PF00202 Aminotransferase class-III VP2798 PF00117 Glutamine amidotransferase class-I VP2804 PF00579 tRNA synthetases class I (W and Y) VP2805 PF13419 Haloacid dehalogenase-like hydrolase VP2806 PF00588 SpoU rRNA Methylase family VP2806 PF08032 RNA 2'-O ribose methyltransferase substrate binding VP2807 PF00575 S1 RNA binding domain VP2807 PF08206 Ribonuclease B OB domain VP2807 PF00773 RNB domain VP2807 PF17876 Cold shock domain VP2807 PF08461 Ribonuclease R winged-helix domain VP2808 PF02082 Transcriptional regulator VP2809 PF00175 Oxidoreductase NAD-binding domain VP2809 PF00970 Oxidoreductase FAD-binding domain VP2809 PF00042 Globin VP2811 PF08238 Sel1 repeat VP2812 PF00709 Adenylosuccinate synthetase VP2813 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VP2814 PF01145 SPFH domain / Band 7 family VP2815 PF01145 SPFH domain / Band 7 family VP2815 PF12221 Bacterial membrane protein N terminal VP2816 PF16360 GTP-binding GTPase Middle Region VP2816 PF13167 GTP-binding GTPase N-terminal VP2816 PF01926 50S ribosome-binding GTPase VP2817 PF17209 Hfq protein VP2819 PF01119 DNA mismatch repair protein, C-terminal domain VP2819 PF08676 MutL C terminal dimerisation domain VP2820 PF01520 N-acetylmuramoyl-L-alanine amidase VP2821 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VP2822 PF08331 Domain of unknown function (DUF1730) VP2823 PF00929 Exonuclease VP2824 PF03193 RsgA GTPase VP2825 PF02666 Phosphatidylserine decarboxylase VP2826 PF00939 Sodium:sulfate symporter transmembrane region VP2827 PF02743 Cache domain VP2827 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP2827 PF00672 HAMP domain VP2829 PF01676 Metalloenzyme superfamily VP2829 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VP2830 PF00581 Rhodanese-like domain VP2831 PF02556 Preprotein translocase subunit SecB VP2832 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VP2832 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VP2833 PF00132 Bacterial transferase hexapeptide (six repeats) VP2833 PF06426 Serine acetyltransferase, N-terminal VP2834 PF01551 Peptidase family M23 VP2836 PF00440 Bacterial regulatory proteins, tetR family VP2836 PF08360 QacR-like protein, C-terminal region VP2838 PF00152 tRNA synthetases class II (D, K and N) VP2840 PF00890 FAD binding domain VP2840 PF02910 Fumarate reductase flavoprotein C-term VP2841 PF13085 2Fe-2S iron-sulfur cluster binding domain VP2841 PF13183 4Fe-4S dicluster domain VP2842 PF02300 Fumarate reductase subunit C VP2843 PF02313 Fumarate reductase subunit D VP2845 PF01132 Elongation factor P (EF-P) OB domain VP2845 PF08207 Elongation factor P (EF-P) KOW-like domain VP2845 PF09285 Elongation factor P, C-terminal VP2846 PF04055 Radical SAM superfamily VP2848 PF00842 Alanine racemase, C-terminal domain VP2848 PF01168 Alanine racemase, N-terminal domain VP2849 PF02308 MgtC family VP2851 PF00118 TCP-1/cpn60 chaperonin family VP2852 PF00166 Chaperonin 10 Kd subunit VP2853 PF01554 MatE VP2855 PF00365 Phosphofructokinase VP2856 PF16916 Dimerisation domain of Zinc Transporter VP2856 PF01545 Cation efflux family VP2857 PF07813 LTXXQ motif family protein VP2858 PF00486 Transcriptional regulatory protein, C terminal VP2858 PF00072 Response regulator receiver domain VP2859 PF16527 Two-component sensor protein CpxA, periplasmic domain VP2859 PF00672 HAMP domain VP2859 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP2859 PF00512 His Kinase A (phospho-acceptor) domain VP2860 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VP2860 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VP2861 PF00588 SpoU rRNA Methylase family VP2862 PF04186 FxsA cytoplasmic membrane protein VP2863 PF00206 Lyase VP2863 PF10415 Fumarase C C-terminus VP2864 PF03605 Anaerobic c4-dicarboxylate membrane transporter VP2865 PF02683 Cytochrome C biogenesis protein transmembrane region VP2865 PF11412 Disulphide bond corrector protein DsbC VP2866 PF00196 Bacterial regulatory proteins, luxR family VP2866 PF00072 Response regulator receiver domain VP2867 PF02080 TrkA-C domain VP2867 PF03471 Transporter associated domain VP2867 PF00999 Sodium/hydrogen exchanger family VP2869 PF00474 Sodium:solute symporter family VP2873 PF00206 Lyase VP2873 PF10415 Fumarase C C-terminus VP2874 PF09308 LuxQ, periplasmic VP2874 PF00072 Response regulator receiver domain VP2874 PF00512 His Kinase A (phospho-acceptor) domain VP2874 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP2875 PF12832 MFS_1 like family VP2878 PF13193 AMP-binding enzyme C-terminal domain VP2878 PF00501 AMP-binding enzyme VP2878 PF16177 Acetyl-coenzyme A synthetase N-terminus VP2879 PF01220 Dehydroquinase class II VP2880 PF00364 Biotin-requiring enzyme VP2881 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VP2881 PF00289 Biotin carboxylase, N-terminal domain VP2881 PF02785 Biotin carboxylase C-terminal domain VP2884 PF01207 Dihydrouridine synthase (Dus) VP2885 PF02954 Bacterial regulatory protein, Fis family VP2886 PF07690 Major Facilitator Superfamily VP2887 PF00005 ABC transporter VP2887 PF12848 ABC transporter VP2888 PF05230 MASE2 domain VP2888 PF00990 Diguanylate cyclase, GGDEF domain VP2890 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VP2890 PF01276 Orn/Lys/Arg decarboxylase, major domain VP2890 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VP2891 PF13520 Amino acid permease VP2893 PF18500 CadC C-terminal domain 1 VP2893 PF00486 Transcriptional regulatory protein, C terminal VP2894 PF13411 MerR HTH family regulatory protein VP2896 PF02142 MGS-like domain VP2896 PF01808 AICARFT/IMPCHase bienzyme VP2898 PF02843 Phosphoribosylglycinamide synthetase, C domain VP2898 PF02844 Phosphoribosylglycinamide synthetase, N domain VP2898 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VP2911 PF00216 Bacterial DNA-binding protein VP2912 PF00571 CBS domain VP2912 PF01595 Cyclin M transmembrane N-terminal domain VP2913 PF04222 Protein of unknown function (DUF416) VP2914 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VP2915 PF03167 Uracil DNA glycosylase superfamily VP2916 PF01208 Uroporphyrinogen decarboxylase (URO-D) VP2919 PF00293 NUDIX domain VP2919 PF09297 NADH pyrophosphatase zinc ribbon domain VP2920 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VP2921 PF04997 RNA polymerase Rpb1, domain 1 VP2921 PF00623 RNA polymerase Rpb1, domain 2 VP2921 PF04983 RNA polymerase Rpb1, domain 3 VP2921 PF05000 RNA polymerase Rpb1, domain 4 VP2921 PF04998 RNA polymerase Rpb1, domain 5 VP2922 PF04560 RNA polymerase Rpb2, domain 7 VP2922 PF00562 RNA polymerase Rpb2, domain 6 VP2922 PF10385 RNA polymerase beta subunit external 1 domain VP2922 PF04563 RNA polymerase beta subunit VP2922 PF04561 RNA polymerase Rpb2, domain 2 VP2922 PF04565 RNA polymerase Rpb2, domain 3 VP2923 PF16320 Ribosomal protein L7/L12 dimerisation domain VP2923 PF00542 Ribosomal protein L7/L12 C-terminal domain VP2924 PF00466 Ribosomal protein L10 VP2925 PF00687 Ribosomal protein L1p/L10e family VP2926 PF00298 Ribosomal protein L11, RNA binding domain VP2926 PF03946 Ribosomal protein L11, N-terminal domain VP2927 PF02357 Transcription termination factor nusG VP2927 PF00467 KOW motif VP2928 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VP2930 PF00009 Elongation factor Tu GTP binding domain VP2930 PF03144 Elongation factor Tu domain 2 VP2930 PF03143 Elongation factor Tu C-terminal domain VP2931 PF02237 Biotin protein ligase C terminal domain VP2931 PF03099 Biotin/lipoate A/B protein ligase family VP2931 PF08279 HTH domain VP2932 PF01565 FAD binding domain VP2932 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VP2934 PF13091 PLD-like domain VP2936 PF01177 Asp/Glu/Hydantoin racemase VP2938 PF07715 TonB-dependent Receptor Plug Domain VP2938 PF00593 TonB dependent receptor VP2939 PF05958 tRNA (Uracil-5-)-methyltransferase VP2941 PF00440 Bacterial regulatory proteins, tetR family VP2942 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP2942 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VP2943 PF01554 MatE VP2944 PF04072 Leucine carboxyl methyltransferase VP2945 PF00717 Peptidase S24-like VP2945 PF01726 LexA DNA binding domain VP2947 PF01553 Acyltransferase VP2948 PF01040 UbiA prenyltransferase family VP2949 PF04345 Chorismate lyase VP2950 PF03748 Flagellar basal body-associated protein FliL VP2951 PF01694 Rhomboid family VP2951 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VP2952 PF00581 Rhodanese-like domain VP2953 PF04545 Sigma-70, region 4 VP2953 PF00140 Sigma-70 factor, region 1.2 VP2953 PF04542 Sigma-70 region 2 VP2954 PF18075 FtsX extracellular domain VP2955 PF00005 ABC transporter VP2956 PF00448 SRP54-type protein, GTPase domain VP2956 PF02881 SRP54-type protein, helical bundle domain VP2959 PF01914 MarC family integral membrane protein VP2970 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VP2970 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VP2971 PF01022 Bacterial regulatory protein, arsR family VP2972 PF08668 HDOD domain VP2972 PF00563 EAL domain VP2973 PF01810 LysE type translocator VP2974 PF12146 Serine aminopeptidase, S33 VP2978 PF03942 DTW domain VP2979 PF00563 EAL domain VP2979 PF00990 Diguanylate cyclase, GGDEF domain VP2979 PF10442 FIST C domain VP2979 PF08495 FIST N domain VP2980 PF13419 Haloacid dehalogenase-like hydrolase VP2981 PF02899 Phage integrase, N-terminal SAM-like domain VP2981 PF00589 Phage integrase family VP2983 PF01678 Diaminopimelate epimerase VP2984 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VP2984 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VP2986 PF01491 Frataxin-like domain VP2987 PF12633 Adenylate cyclase NT domain VP2987 PF01295 Adenylate cyclase, class-I VP2988 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VP2988 PF03900 Porphobilinogen deaminase, C-terminal domain VP2989 PF02602 Uroporphyrinogen-III synthase HemD VP2990 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VP2991 PF07219 HemY protein N-terminus VP2995 PF00175 Oxidoreductase NAD-binding domain VP2996 PF00111 2Fe-2S iron-sulfur cluster binding domain VP2997 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VP3000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VP3000 PF07497 Rho termination factor, RNA-binding domain VP3000 PF07498 Rho termination factor, N-terminal domain VP3001 PF00085 Thioredoxin VP3002 PF00271 Helicase conserved C-terminal domain VP3002 PF00270 DEAD/DEAH box helicase VP3003 PF02541 Ppx/GppA phosphatase family VP3004 PF02592 Putative vitamin uptake transporter VP3007 PF00570 HRDC domain VP3007 PF00271 Helicase conserved C-terminal domain VP3007 PF00270 DEAD/DEAH box helicase VP3007 PF16124 RecQ zinc-binding VP3007 PF09382 RQC domain VP3008 PF00892 EamA-like transporter family VP3010 PF01810 LysE type translocator VP3013 PF13361 UvrD-like helicase C-terminal domain VP3013 PF00580 UvrD/REP helicase N-terminal domain VP3015 PF05114 Protein of unknown function (DUF692) VP3019 PF07690 Major Facilitator Superfamily VP3020 PF03466 LysR substrate binding domain VP3020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP3021 PF01321 Creatinase/Prolidase N-terminal domain VP3021 PF00557 Metallopeptidase family M24 VP3021 PF01321 Creatinase/Prolidase N-terminal domain VP3021 PF00557 Metallopeptidase family M24 VP3022 PF06968 Biotin and Thiamin Synthesis associated domain VP3022 PF04055 Radical SAM superfamily VP3023 PF05690 Thiazole biosynthesis protein ThiG VP3024 PF02597 ThiS family VP3025 PF00899 ThiF family VP3026 PF02581 Thiamine monophosphate synthase VP3027 PF13667 ThiC-associated domain VP3027 PF01964 Radical SAM ThiC family VP3028 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VP3031 PF00132 Bacterial transferase hexapeptide (six repeats) VP3032 PF07369 Protein of unknown function (DUF1488) VP3033 PF08501 Shikimate dehydrogenase substrate binding domain VP3033 PF01488 Shikimate / quinate 5-dehydrogenase VP3033 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VP3034 PF01218 Coproporphyrinogen III oxidase VP3035 PF01300 Telomere recombination VP3036 PF00731 AIR carboxylase VP3037 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VP3037 PF02222 ATP-grasp domain VP3038 PF01396 Topoisomerase DNA binding C4 zinc finger VP3039 PF04361 Protein of unknown function (DUF494) VP3040 PF17782 DprA winged helix domain VP3040 PF02481 DNA recombination-mediator protein A VP3042 PF01327 Polypeptide deformylase VP3043 PF02911 Formyl transferase, C-terminal domain VP3043 PF00551 Formyl transferase VP3044 PF01029 NusB family VP3044 PF01189 16S rRNA methyltransferase RsmB/F VP3045 PF02080 TrkA-C domain VP3045 PF02254 TrkA-N domain VP3046 PF02386 Cation transport protein VP3048 PF03006 Haemolysin-III related VP3049 PF07070 SpoOM protein VP3051 PF06288 Protein of unknown function (DUF1040) VP3052 PF13746 4Fe-4S dicluster domain VP3052 PF12801 4Fe-4S binding domain VP3052 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VP3053 PF01636 Phosphotransferase enzyme family VP3054 PF01323 DSBA-like thioredoxin domain VP3055 PF01553 Acyltransferase VP3057 PF13335 Magnesium chelatase, subunit ChlI C-terminal VP3057 PF01078 Magnesium chelatase, subunit ChlI VP3058 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VP3058 PF00205 Thiamine pyrophosphate enzyme, central domain VP3058 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VP3060 PF01063 Amino-transferase class IV VP3061 PF00920 Dehydratase family VP3062 PF00585 C-terminal regulatory domain of Threonine dehydratase VP3062 PF00291 Pyridoxal-phosphate dependent enzyme VP3063 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP3063 PF03466 LysR substrate binding domain VP3064 PF07690 Major Facilitator Superfamily VP3065 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP3066 PF00528 Binding-protein-dependent transport system inner membrane component VP3067 PF00132 Bacterial transferase hexapeptide (six repeats) VP3067 PF12804 MobA-like NTP transferase domain VP3068 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VP3068 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VP3069 PF02874 ATP synthase alpha/beta family, beta-barrel domain VP3069 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VP3070 PF00231 ATP synthase VP3071 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VP3071 PF02874 ATP synthase alpha/beta family, beta-barrel domain VP3071 PF00306 ATP synthase alpha/beta chain, C terminal domain VP3072 PF00213 ATP synthase delta (OSCP) subunit VP3073 PF00430 ATP synthase B/B' CF(0) VP3074 PF00137 ATP synthase subunit C VP3075 PF00119 ATP synthase A chain VP3076 PF03899 ATP synthase I chain VP3077 PF17762 HTH domain found in ParB protein VP3077 PF02195 ParB-like nuclease domain VP3078 PF13614 AAA domain VP3079 PF02527 rRNA small subunit methyltransferase G VP3080 PF01134 Glucose inhibited division protein A VP3080 PF13932 GidA associated domain VPA0002 PF14849 YidC periplasmic domain VPA0002 PF02096 60Kd inner membrane protein VPA0010 PF02463 RecF/RecN/SMC N terminal domain VPA0023 PF02092 Glycyl-tRNA synthetase beta subunit VPA0023 PF05746 DALR anticodon binding domain VPA0099 PF06490 Flagellar regulatory protein FleQ VPA0099 PF00158 Sigma-54 interaction domain VPA0099 PF02954 Bacterial regulatory protein, Fis family VPA0120 PF01612 3'-5' exonuclease VPA0120 PF00476 DNA polymerase family A VPA0120 PF01367 5'-3' exonuclease, C-terminal SAM fold VPA0120 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VPA0121 PF01367 5'-3' exonuclease, C-terminal SAM fold VPA0121 PF00476 DNA polymerase family A VPA0121 PF01612 3'-5' exonuclease VPA0121 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VPA0130 PF00962 Adenosine/AMP deaminase VPA0132 PF00990 Diguanylate cyclase, GGDEF domain VPA0132 PF00563 EAL domain VPA0132 PF13188 PAS domain VPA0132 PF03707 Bacterial signalling protein N terminal repeat VPA0133 PF03707 Bacterial signalling protein N terminal repeat VPA0133 PF00990 Diguanylate cyclase, GGDEF domain VPA0133 PF00563 EAL domain VPA0135 PF00158 Sigma-54 interaction domain VPA0135 PF02954 Bacterial regulatory protein, Fis family VPA0135 PF00072 Response regulator receiver domain VPA0137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPA0137 PF00989 PAS fold VPA0137 PF00512 His Kinase A (phospho-acceptor) domain VPA0144 PF01293 Phosphoenolpyruvate carboxykinase VPA0149 PF00263 Bacterial type II and III secretion system protein VPA0149 PF03958 Bacterial type II/III secretion system short domain VPA0172 PF00270 DEAD/DEAH box helicase VPA0172 PF17191 RecG wedge domain VPA0172 PF00271 Helicase conserved C-terminal domain VPA0201 PF05686 Glycosyl transferase family 90 VPA0220 PF00534 Glycosyl transferases group 1 VPA0220 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VPA0312 PF02441 Flavoprotein VPA0326 PF00056 lactate/malate dehydrogenase, NAD binding domain VPA0326 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VPA0340 PF09312 SurA N-terminal domain VPA0355 PF00501 AMP-binding enzyme VPA0426 PF01384 Phosphate transporter family VPA0428 PF01928 CYTH domain VPA0435 PF08335 GlnD PII-uridylyltransferase VPA0435 PF03710 Glutamate-ammonia ligase adenylyltransferase VPA0438 PF01467 Cytidylyltransferase-like VPA0438 PF00294 pfkB family carbohydrate kinase VPA0445 PF00521 DNA gyrase/topoisomerase IV, subunit A VPA0445 PF03989 DNA gyrase C-terminal domain, beta-propeller VPA0452 PF02167 Cytochrome C1 family VPA0456 PF04348 LppC putative lipoprotein VPA0463 PF02875 Mur ligase family, glutamate ligase domain VPA0463 PF08245 Mur ligase middle domain VPA0463 PF01225 Mur ligase family, catalytic domain VPA0489 PF01493 GXGXG motif VPA0489 PF00310 Glutamine amidotransferases class-II VPA0489 PF04898 Glutamate synthase central domain VPA0489 PF01645 Conserved region in glutamate synthase VPA0491 PF01645 Conserved region in glutamate synthase VPA0491 PF00310 Glutamine amidotransferases class-II VPA0491 PF04898 Glutamate synthase central domain VPA0491 PF01493 GXGXG motif VPA0514 PF00270 DEAD/DEAH box helicase VPA0514 PF00271 Helicase conserved C-terminal domain VPA0520 PF17768 RecJ OB domain VPA0520 PF02272 DHHA1 domain VPA0520 PF01368 DHH family VPA0578 PF17871 AAA lid domain VPA0578 PF07724 AAA domain (Cdc48 subfamily) VPA0578 PF00004 ATPase family associated with various cellular activities (AAA) VPA0578 PF10431 C-terminal, D2-small domain, of ClpB protein VPA0578 PF02861 Clp amino terminal domain, pathogenicity island component VPA0580 PF00004 ATPase family associated with various cellular activities (AAA) VPA0580 PF10431 C-terminal, D2-small domain, of ClpB protein VPA0580 PF02861 Clp amino terminal domain, pathogenicity island component VPA0580 PF07724 AAA domain (Cdc48 subfamily) VPA0580 PF17871 AAA lid domain VPA0631 PF01926 50S ribosome-binding GTPase VPA0631 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VPA0696 PF02609 Exonuclease VII small subunit VPA0719 PF00464 Serine hydroxymethyltransferase VPA0742 PF01926 50S ribosome-binding GTPase VPA0742 PF06071 Protein of unknown function (DUF933) VPA0770 PF00749 tRNA synthetases class I (E and Q), catalytic domain VPA0797 PF07196 Flagellin hook IN motif VPA0797 PF00669 Bacterial flagellin N-terminal helical region VPA0797 PF00700 Bacterial flagellin C-terminal helical region VPA0855 PF07670 Nucleoside recognition VPA0855 PF07664 Ferrous iron transport protein B C terminus VPA0855 PF02421 Ferrous iron transport protein B VPA0855 PF17910 FeoB cytosolic helical domain VPA0858 PF00750 tRNA synthetases class I (R) VPA0858 PF05746 DALR anticodon binding domain VPA0858 PF03485 Arginyl tRNA synthetase N terminal domain VPA0886 PF04820 Tryptophan halogenase VPA0890 PF00571 CBS domain VPA0890 PF03471 Transporter associated domain VPA0911 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VPA0934 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VPA0934 PF16582 Middle domain of thiamine pyrophosphate VPA0934 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VPA0937 PF13378 Enolase C-terminal domain-like VPA0984 PF04293 SpoVR like protein VPA1013 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VPA1111 PF00202 Aminotransferase class-III VPA1142 PF00149 Calcineurin-like phosphoesterase VPA1156 PF16874 Glycosyl hydrolase family 36 C-terminal domain VPA1156 PF16875 Glycosyl hydrolase family 36 N-terminal domain VPA1161 PF00528 Binding-protein-dependent transport system inner membrane component VPA1226 PF07055 Enoyl reductase FAD binding domain VPA1226 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VPA1226 PF12241 Trans-2-enoyl-CoA reductase catalytic region VPA1244 PF00664 ABC transporter transmembrane region VPA1244 PF00005 ABC transporter VPA1278 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VPA1278 PF02824 TGS domain VPA1278 PF03129 Anticodon binding domain VPA1278 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VPA1279 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VPA1279 PF03129 Anticodon binding domain VPA1279 PF02824 TGS domain VPA1279 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VPA1293 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VPA1293 PF03147 Ferredoxin-fold anticodon binding domain VPA1293 PF03484 tRNA synthetase B5 domain VPA1293 PF01588 Putative tRNA binding domain VPA1293 PF03483 B3/4 domain VPA1304 PF00375 Sodium:dicarboxylate symporter family VPA1315 PF00005 ABC transporter VPA1335 PF00171 Aldehyde dehydrogenase family VPA1428 PF00069 Protein kinase domain VPA1472 PF00534 Glycosyl transferases group 1 VPA1472 PF13439 Glycosyltransferase Family 4 VPA1557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPA1557 PF09308 LuxQ, periplasmic VPA1557 PF00072 Response regulator receiver domain VPA1557 PF00512 His Kinase A (phospho-acceptor) domain VPA1558 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VPA1558 PF00512 His Kinase A (phospho-acceptor) domain VPA1558 PF09308 LuxQ, periplasmic VPA1558 PF00072 Response regulator receiver domain VPA1587 PF07977 FabA-like domain VPA1596 PF05088 Bacterial NAD-glutamate dehydrogenase VPA1600 PF11940 Domain of unknown function (DUF3458) Ig-like fold VPA1600 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VPA1600 PF01433 Peptidase family M1 domain VPA1606 PF13185 GAF domain VPA1686 PF00263 Bacterial type II and III secretion system protein VPA1686 PF03958 Bacterial type II/III secretion system short domain VPA1719 PF02028 BCCT, betaine/carnitine/choline family transporter VPA1737 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VPA1740 PF13520 Amino acid permease VPAt06 PF03279 Bacterial lipid A biosynthesis acyltransferase