VP0006 SM00382 ATPases associated with a variety of cellular activities VP0008 SM00062 Bacterial periplasmic substrate-binding proteins VP0011 SM00382 ATPases associated with a variety of cellular activities VP0011 SM00760 Bacterial dnaA protein helix-turn-helix domain VP0012 SM00480 DNA polymerase III beta subunit VP0014 SM00387 Histidine kinase-like ATPases VP0014 SM00433 TopoisomeraseII VP0020 SM00642 Alpha-amylase domain VP0028 SM00829 Enoylreductase VP0047 SM00382 ATPases associated with a variety of cellular activities VP0057 SM00220 Serine/Threonine protein kinases, catalytic domain VP0058 SM00354 helix_turn _helix lactose operon repressor VP0071 SM00052 Putative diguanylate phosphodiesterase VP0071 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VP0071 SM00091 PAS domain VP0071 SM00267 diguanylate cyclase VP0072 SM00344 helix_turn_helix ASNC type VP0080 SM00382 ATPases associated with a variety of cellular activities VP0081 SM00749 bacterial OsmY and nodulation domain VP0085 SM00046 Diacylglycerol kinase catalytic domain (presumed) VP0085 SM00195 Dual specificity phosphatase, catalytic domain VP0085 SM00404 Protein tyrosine phosphatase, catalytic domain motif VP0092 SM00052 Putative diguanylate phosphodiesterase VP0092 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VP0092 SM00091 PAS domain VP0092 SM00267 diguanylate cyclase VP0104 SM01004 Delta-aminolevulinic acid dehydratase VP0107 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VP0107 SM00474 3'-5' exonuclease VP0107 SM00475 5'-3' exonuclease VP0107 SM00482 DNA polymerase A domain VP0115 SM00729 Elongator protein 3, MiaB family, Radical SAM VP0117 SM00052 Putative diguanylate phosphodiesterase VP0117 SM00267 diguanylate cyclase VP0117 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP0118 SM00382 ATPases associated with a variety of cellular activities VP0118 SM00448 cheY-homologous receiver domain VP0119 SM00091 PAS domain VP0119 SM00387 Histidine kinase-like ATPases VP0119 SM00388 His Kinase A (phosphoacceptor) domain VP0121 SM01230 VP0121 VP0131 SM00363 S4 RNA-binding domain VP0134 SM00382 ATPases associated with a variety of cellular activities VP0150 SM00316 Ribosomal protein S1-like RNA-binding domain VP0150 SM00732 Likely ribonuclease with RNase H fold. VP0154 SM00448 cheY-homologous receiver domain VP0154 SM00862 Transcriptional regulatory protein, C terminal VP0155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP0155 SM00387 Histidine kinase-like ATPases VP0155 SM00388 His Kinase A (phosphoacceptor) domain VP0157 SM00487 DEAD-like helicases superfamily VP0157 SM00490 helicase superfamily c-terminal domain VP0159 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VP0159 SM00954 Region found in RelA / SpoT proteins VP0160 SM01409 VP0160 VP0161 SM00072 Guanylate kinase homologues. VP0162 SM00028 Tetratricopeptide repeats VP0173 SM00382 ATPases associated with a variety of cellular activities VP0174 SM00382 ATPases associated with a variety of cellular activities VP0183 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP0183 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP0183 SM01049 VP0183 VP0189 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain VP0189 SM01232 VP0189 VP0191 SM00672 Putative lipopolysaccharide-modifying enzyme. VP0202 SM00116 Domain in cystathionine beta-synthase and other proteins. VP0236 SM00984 UDP binding domain VP0238 SM00849 Metallo-beta-lactamase superfamily VP0238 SM01027 Beta-Casp domain VP0249 SM00382 ATPases associated with a variety of cellular activities VP0249 SM01086 C-terminal, D2-small domain, of ClpB protein VP0252 SM00354 helix_turn _helix lactose operon repressor VP0253 SM00487 DEAD-like helicases superfamily VP0253 SM00490 helicase superfamily c-terminal domain VP0256 SM01403 VP0256 VP0260 SM01382 VP0260 VP0260 SM01383 VP0260 VP0263 SM00322 K homology RNA-binding domain VP0267 SM01374 VP0267 VP0268 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VP0281 SM00363 S4 RNA-binding domain VP0281 SM01390 VP0281 VP0282 SM00662 RNA polymerases D VP0288 SM00487 DEAD-like helicases superfamily VP0288 SM00490 helicase superfamily c-terminal domain VP0301 SM00382 ATPases associated with a variety of cellular activities VP0318 SM00382 ATPases associated with a variety of cellular activities VP0336 SM00650 Ribosomal RNA adenine dimethylases VP0340 SM00271 DnaJ molecular chaperone homology domain VP0344 SM01329 VP0344 VP0346 SM00917 LeuA allosteric (dimerisation) domain VP0348 SM00014 Acid phosphatase homologues VP0354 SM00267 diguanylate cyclase VP0355 SM00345 helix_turn_helix gluconate operon transcriptional repressor VP0358 SM00420 helix_turn_helix, Deoxyribose operon repressor VP0358 SM01134 VP0358 VP0361 SM00448 cheY-homologous receiver domain VP0361 SM00862 Transcriptional regulatory protein, C terminal VP0362 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP0362 SM00387 Histidine kinase-like ATPases VP0362 SM00388 His Kinase A (phosphoacceptor) domain VP0365 SM01120 VP0365 VP0372 SM00563 Phosphate acyltransferases VP0376 SM00052 Putative diguanylate phosphodiesterase VP0377 SM00342 helix_turn_helix, arabinose operon control protein VP0395 SM00487 DEAD-like helicases superfamily VP0403 SM00530 Helix-turn-helix XRE-family like proteins VP0405 SM00400 zinc finger VP0405 SM00493 VP0405 VP0405 SM00766 DNA primase DnaG DnaB-binding VP0410 SM01207 VP0410 VP0411 SM00905 Dihydroneopterin aldolase VP0415 SM00382 ATPases associated with a variety of cellular activities VP0417 SM00287 Bacterial SH3 domain homologues VP0420 SM00880 VP0420 VP0420 SM01118 VP0420 VP0421 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP0430 SM00387 Histidine kinase-like ATPases VP0430 SM00433 TopoisomeraseII VP0431 SM00434 DNA Topoisomerase IV VP0432 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VP0433 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VP0446 SM00749 bacterial OsmY and nodulation domain VP0463 SM00842 Cell division protein FtsA VP0464 SM00864 Tubulin/FtsZ family, GTPase domain VP0464 SM00865 Tubulin/FtsZ family, C-terminal domain VP0467 SM00957 SecA DEAD-like domain VP0467 SM00958 SecA preprotein cross-linking domain VP0470 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain VP0471 SM00851 MGS-like domain VP0471 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VP0485 SM00729 Elongator protein 3, MiaB family, Radical SAM VP0486 SM00091 PAS domain VP0486 SM00267 diguanylate cyclase VP0487 SM00073 Histidine Phosphotransfer domain VP0487 SM00091 PAS domain VP0487 SM00387 Histidine kinase-like ATPases VP0487 SM00388 His Kinase A (phosphoacceptor) domain VP0487 SM00448 cheY-homologous receiver domain VP0489 SM00448 cheY-homologous receiver domain VP0489 SM00862 Transcriptional regulatory protein, C terminal VP0498 SM00518 AP endonuclease family 2 VP0500 SM00986 Uracil DNA glycosylase superfamily VP0500 SM00987 UreE urease accessory protein, C-terminal domain VP0505 SM00487 DEAD-like helicases superfamily VP0505 SM00490 helicase superfamily c-terminal domain VP0512 SM00937 VP0512 VP0514 SM00382 ATPases associated with a variety of cellular activities VP0518 SM00927 DNA mismatch repair enzyme MutH VP0521 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VP0525 SM01154 VP0525 VP0529 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VP0533 SM00904 Riboflavin kinase VP0538 SM00448 cheY-homologous receiver domain VP0538 SM00850 LytTr DNA-binding domain VP0547 SM00830 Chorismate mutase type II VP0551 SM00382 ATPases associated with a variety of cellular activities VP0555 SM00830 Chorismate mutase type II VP0557 SM00062 Bacterial periplasmic substrate-binding proteins VP0559 SM00363 S4 RNA-binding domain VP0561 SM00382 ATPases associated with a variety of cellular activities VP0561 SM01086 C-terminal, D2-small domain, of ClpB protein VP0569 SM00448 cheY-homologous receiver domain VP0569 SM00862 Transcriptional regulatory protein, C terminal VP0570 SM00091 PAS domain VP0570 SM00387 Histidine kinase-like ATPases VP0570 SM00388 His Kinase A (phosphoacceptor) domain VP0576 SM00382 ATPases associated with a variety of cellular activities VP0585 SM00116 Domain in cystathionine beta-synthase and other proteins. VP0586 SM00020 Trypsin-like serine protease VP0589 SM01323 VP0589 VP0599 SM00271 DnaJ molecular chaperone homology domain VP0604 SM00562 VP0604 VP0607 SM00530 Helix-turn-helix XRE-family like proteins VP0611 SM00564 beta-propeller repeat VP0612 SM00382 ATPases associated with a variety of cellular activities VP0616 SM00116 Domain in cystathionine beta-synthase and other proteins. VP0616 SM01240 VP0616 VP0619 SM00495 Chitin-binding domain type 3 VP0638 SM00857 Resolvase, N terminal domain VP0654 SM00271 DnaJ molecular chaperone homology domain VP0665 SM00062 Bacterial periplasmic substrate-binding proteins VP0666 SM01211 VP0666 VP0676 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VP0686 SM00861 Transketolase, pyrimidine binding domain VP0691 SM00981 VP0691 VP0696 SM00477 DNA/RNA non-specific endonuclease VP0696 SM00892 DNA/RNA non-specific endonuclease VP0697 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VP0697 SM00475 5'-3' exonuclease VP0699 SM00267 diguanylate cyclase VP0700 SM00028 Tetratricopeptide repeats VP0706 SM00382 ATPases associated with a variety of cellular activities VP0706 SM00930 VP0706 VP0709 SM00354 helix_turn _helix lactose operon repressor VP0711 SM00642 Alpha-amylase domain VP0713 SM00862 Transcriptional regulatory protein, C terminal VP0716 SM00729 Elongator protein 3, MiaB family, Radical SAM VP0719 SM00936 Penicillin-binding protein 5, C-terminal domain VP0730 SM00116 Domain in cystathionine beta-synthase and other proteins. VP0730 SM01091 Transporter associated domain VP0733 SM00729 Elongator protein 3, MiaB family, Radical SAM VP0739 SM01400 VP0739 VP0743 SM00937 VP0743 VP0750 SM00363 S4 RNA-binding domain VP0751 SM00463 Small MutS-related domain VP0755 SM01081 Putative carbohydrate binding domain VP0772 SM00858 VP0772 VP0773 SM00260 Two component signalling adaptor domain VP0773 SM00448 cheY-homologous receiver domain VP0774 SM00138 Methyltransferase, chemotaxis proteins VP0784 SM00047 Lysozyme subfamily 2 VP0799 SM00771 ZipA, C-terminal domain (FtsZ-binding) VP0800 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VP0800 SM00292 breast cancer carboxy-terminal domain VP0800 SM00532 Ligase N family VP0805 SM00244 prohibitin homologues VP0813 SM00938 Nitrogen regulatory protein P-II VP0814 SM00116 Domain in cystathionine beta-synthase and other proteins. VP0820 SM00862 Transcriptional regulatory protein, C terminal VP0821 SM00387 Histidine kinase-like ATPases VP0825 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VP0847 SM00861 Transketolase, pyrimidine binding domain VP0850 SM00881 CoA binding domain VP0852 SM00382 ATPases associated with a variety of cellular activities VP0854 SM00342 helix_turn_helix, arabinose operon control protein VP0857 SM00899 VP0857 VP0861 SM00836 DALR anticodon binding domain VP0861 SM01016 Arginyl tRNA synthetase N terminal dom VP0865 SM00487 DEAD-like helicases superfamily VP0865 SM00491 VP0865 VP0871 SM00474 3'-5' exonuclease VP0881 SM00825 Beta-ketoacyl synthase VP0882 SM00822 VP0882 VP0884 SM00825 Beta-ketoacyl synthase VP0896 SM00563 Phosphate acyltransferases VP0902 SM01091 Transporter associated domain VP0903 SM00487 DEAD-like helicases superfamily VP0903 SM00490 helicase superfamily c-terminal domain VP0907 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VP0914 SM00382 ATPases associated with a variety of cellular activities VP0914 SM00448 cheY-homologous receiver domain VP0915 SM00387 Histidine kinase-like ATPases VP0915 SM00388 His Kinase A (phosphoacceptor) domain VP0918 SM00382 ATPases associated with a variety of cellular activities VP0918 SM00994 ClpX C4-type zinc finger VP0918 SM01086 C-terminal, D2-small domain, of ClpB protein VP0919 SM00382 ATPases associated with a variety of cellular activities VP0919 SM00464 Found in ATP-dependent protease La (LON) VP0920 SM00411 bacterial (prokaryotic) histone like domain VP0922 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VP0923 SM01144 VP0923 VP0925 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VP0926 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VP0932 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain VP0937 SM00563 Phosphate acyltransferases VP0939 SM00978 VP0939 VP0947 SM00344 helix_turn_helix ASNC type VP0953 SM00062 Bacterial periplasmic substrate-binding proteins VP0953 SM00267 diguanylate cyclase VP0958 SM00116 Domain in cystathionine beta-synthase and other proteins. VP0963 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP0963 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP0975 SM00487 DEAD-like helicases superfamily VP0975 SM00490 helicase superfamily c-terminal domain VP0975 SM00982 VP0975 VP0975 SM01058 CarD-like/TRCF domain VP0978 SM00382 ATPases associated with a variety of cellular activities VP0981 SM00849 Metallo-beta-lactamase superfamily VP0982 SM00382 ATPases associated with a variety of cellular activities VP0988 SM00763 PrkA AAA domain VP0998 SM00382 ATPases associated with a variety of cellular activities VP0999 SM00062 Bacterial periplasmic substrate-binding proteins VP0999 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. VP1002 SM01276 VP1002 VP1007 SM00491 VP1007 VP1012 SM00357 Cold shock protein domain VP1014 SM00382 ATPases associated with a variety of cellular activities VP1014 SM01086 C-terminal, D2-small domain, of ClpB protein VP1016 SM00316 Ribosomal protein S1-like RNA-binding domain VP1022 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VP1022 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VP1022 SM00493 VP1022 VP1030 SM00354 helix_turn _helix lactose operon repressor VP1032 SM00448 cheY-homologous receiver domain VP1032 SM00862 Transcriptional regulatory protein, C terminal VP1051 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VP1052 SM00382 ATPases associated with a variety of cellular activities VP1062 SM00028 Tetratricopeptide repeats VP1069 SM00387 Histidine kinase-like ATPases VP1069 SM00388 His Kinase A (phosphoacceptor) domain VP1069 SM00448 cheY-homologous receiver domain VP1072 SM00487 DEAD-like helicases superfamily VP1073 SM00530 Helix-turn-helix XRE-family like proteins VP1088 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP1088 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP1093 SM00347 helix_turn_helix multiple antibiotic resistance protein VP1103 SM01002 Alanine dehydrogenase/PNT, C-terminal domain VP1103 SM01003 Alanine dehydrogenase/PNT, N-terminal domain VP1104 SM00344 helix_turn_helix ASNC type VP1105 SM00843 VP1105 VP1107 SM00382 ATPases associated with a variety of cellular activities VP1113 SM00729 Elongator protein 3, MiaB family, Radical SAM VP1113 SM00876 Biotin and Thiamin Synthesis associated domain VP1133 SM00528 Domain in histone-like proteins of HNS family VP1136 SM00382 ATPases associated with a variety of cellular activities VP1147 SM00052 Putative diguanylate phosphodiesterase VP1150 SM00840 VP1150 VP1165 SM01131 VP1165 VP1167 SM00382 ATPases associated with a variety of cellular activities VP1168 SM00382 ATPases associated with a variety of cellular activities VP1172 SM00382 ATPases associated with a variety of cellular activities VP1183 SM00155 Phospholipase D. Active site motifs. VP1185 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP1185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP1190 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. VP1190 SM00382 ATPases associated with a variety of cellular activities VP1194 SM00382 ATPases associated with a variety of cellular activities VP1200 SM00450 Rhodanese Homology Domain VP1201 SM00387 Histidine kinase-like ATPases VP1201 SM00388 His Kinase A (phosphoacceptor) domain VP1202 SM00421 helix_turn_helix, Lux Regulon VP1202 SM00448 cheY-homologous receiver domain VP1211 SM00387 Histidine kinase-like ATPases VP1212 SM00448 cheY-homologous receiver domain VP1212 SM00862 Transcriptional regulatory protein, C terminal VP1214 SM00487 DEAD-like helicases superfamily VP1214 SM00490 helicase superfamily c-terminal domain VP1215 SM00363 S4 RNA-binding domain VP1225 SM00382 ATPases associated with a variety of cellular activities VP1244 SM00448 cheY-homologous receiver domain VP1245 SM00100 Cyclic nucleotide-monophosphate binding domain VP1245 SM00387 Histidine kinase-like ATPases VP1249 SM00382 ATPases associated with a variety of cellular activities VP1250 SM00382 ATPases associated with a variety of cellular activities VP1255 SM00267 diguanylate cyclase VP1258 SM00919 Malic enzyme, NAD binding domain VP1258 SM01274 VP1258 VP1259 SM00487 DEAD-like helicases superfamily VP1259 SM00490 helicase superfamily c-terminal domain VP1259 SM00847 Helicase associated domain (HA2) Add an annotation VP1277 SM00345 helix_turn_helix gluconate operon transcriptional repressor VP1277 SM00866 VP1277 VP1280 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VP1284 SM00530 Helix-turn-helix XRE-family like proteins VP1289 SM00267 diguanylate cyclase VP1291 SM00873 B3/4 domain VP1291 SM00874 tRNA synthetase B5 domain VP1291 SM00896 Ferredoxin-fold anticodon binding domain VP1294 SM00411 bacterial (prokaryotic) histone like domain VP1301 SM00479 VP1301 VP1307 SM00855 Phosphoglycerate mutase family VP1312 SM00382 ATPases associated with a variety of cellular activities VP1326 SM00245 tail specific protease VP1328 SM00345 helix_turn_helix gluconate operon transcriptional repressor VP1328 SM00895 VP1328 VP1335 SM01130 VP1335 VP1336 SM00382 ATPases associated with a variety of cellular activities VP1340 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins VP1343 SM00382 ATPases associated with a variety of cellular activities VP1344 SM00382 ATPases associated with a variety of cellular activities VP1363 SM00382 ATPases associated with a variety of cellular activities VP1371 SM00855 Phosphoglycerate mutase family VP1375 SM00100 Cyclic nucleotide-monophosphate binding domain VP1375 SM00387 Histidine kinase-like ATPases VP1376 SM00448 cheY-homologous receiver domain VP1377 SM00052 Putative diguanylate phosphodiesterase VP1377 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VP1377 SM00091 PAS domain VP1377 SM00267 diguanylate cyclase VP1378 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VP1391 SM00382 ATPases associated with a variety of cellular activities VP1392 SM00382 ATPases associated with a variety of cellular activities VP1392 SM01086 C-terminal, D2-small domain, of ClpB protein VP1400 SM00220 Serine/Threonine protein kinases, catalytic domain VP1407 SM00344 helix_turn_helix ASNC type VP1411 SM00240 Forkhead associated domain VP1422 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. VP1423 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VP1431 SM00382 ATPases associated with a variety of cellular activities VP1432 SM00382 ATPases associated with a variety of cellular activities VP1441 SM00267 diguanylate cyclase VP1441 SM01079 VP1441 VP1442 SM00479 VP1442 VP1447 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VP1453 SM00382 ATPases associated with a variety of cellular activities VP1453 SM00487 DEAD-like helicases superfamily VP1453 SM00490 helicase superfamily c-terminal domain VP1453 SM00847 Helicase associated domain (HA2) Add an annotation VP1469 SM00382 ATPases associated with a variety of cellular activities VP1469 SM00448 cheY-homologous receiver domain VP1482 SM00448 cheY-homologous receiver domain VP1483 SM00267 diguanylate cyclase VP1486 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP1493 SM01144 VP1493 VP1496 SM00852 Probable molybdopterin binding domain VP1498 SM00382 ATPases associated with a variety of cellular activities VP1502 SM00382 ATPases associated with a variety of cellular activities VP1502 SM00448 cheY-homologous receiver domain VP1503 SM00387 Histidine kinase-like ATPases VP1503 SM00388 His Kinase A (phosphoacceptor) domain VP1504 SM00382 ATPases associated with a variety of cellular activities VP1513 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VP1529 SM00382 ATPases associated with a variety of cellular activities VP1536 SM00100 Cyclic nucleotide-monophosphate binding domain VP1536 SM00419 helix_turn_helix, cAMP Regulatory protein VP1546 SM00897 FIST N domain VP1546 SM01204 VP1546 VP1547 SM00387 Histidine kinase-like ATPases VP1547 SM00388 His Kinase A (phosphoacceptor) domain VP1547 SM00448 cheY-homologous receiver domain VP1595 SM00382 ATPases associated with a variety of cellular activities VP1597 SM00981 VP1597 VP1606 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VP1606 SM00245 tail specific protease VP1607 SM00945 ProQ/FINO family VP1609 SM00382 ATPases associated with a variety of cellular activities VP1613 SM00316 Ribosomal protein S1-like RNA-binding domain VP1620 SM00062 Bacterial periplasmic substrate-binding proteins VP1623 SM00382 ATPases associated with a variety of cellular activities VP1628 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP1629 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase VP1633 SM00327 von Willebrand factor (vWF) type A domain VP1633 SM00736 Dystroglycan-type cadherin-like domains. VP1637 SM00028 Tetratricopeptide repeats VP1637 SM00267 diguanylate cyclase VP1642 SM00020 Trypsin-like serine protease VP1642 SM00495 Chitin-binding domain type 3 VP1649 SM00345 helix_turn_helix gluconate operon transcriptional repressor VP1649 SM00895 VP1649 VP1668 SM00382 ATPases associated with a variety of cellular activities VP1699 SM00342 helix_turn_helix, arabinose operon control protein VP1704 SM00382 ATPases associated with a variety of cellular activities VP1708 SM01350 VP1708 VP1711 SM00448 cheY-homologous receiver domain VP1712 SM00091 PAS domain VP1712 SM00387 Histidine kinase-like ATPases VP1724 SM00479 VP1724 VP1725 SM00100 Cyclic nucleotide-monophosphate binding domain VP1725 SM00116 Domain in cystathionine beta-synthase and other proteins. VP1726 SM00382 ATPases associated with a variety of cellular activities VP1731 SM01236 VP1731 VP1732 SM00822 VP1732 VP1734 SM00448 cheY-homologous receiver domain VP1734 SM00862 Transcriptional regulatory protein, C terminal VP1735 SM00387 Histidine kinase-like ATPases VP1735 SM00388 His Kinase A (phosphoacceptor) domain VP1752 SM00028 Tetratricopeptide repeats VP1754 SM00052 Putative diguanylate phosphodiesterase VP1754 SM00267 diguanylate cyclase VP1754 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP1755 SM00387 Histidine kinase-like ATPases VP1755 SM00388 His Kinase A (phosphoacceptor) domain VP1755 SM00448 cheY-homologous receiver domain VP1760 SM01118 VP1760 VP1763 SM00347 helix_turn_helix multiple antibiotic resistance protein VP1765 SM00342 helix_turn_helix, arabinose operon control protein VP1766 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VP1767 SM00635 Bacterial Ig-like domain 2 VP1768 SM00052 Putative diguanylate phosphodiesterase VP1770 SM01131 VP1770 VP1778 SM00530 Helix-turn-helix XRE-family like proteins VP1781 SM01230 VP1781 VP1789 SM00357 Cold shock protein domain VP1808 SM00028 Tetratricopeptide repeats VP1812 SM00255 Toll - interleukin 1 - resistance VP1869 SM00091 PAS domain VP1869 SM00382 ATPases associated with a variety of cellular activities VP1876 SM00387 Histidine kinase-like ATPases VP1876 SM00388 His Kinase A (phosphoacceptor) domain VP1876 SM00448 cheY-homologous receiver domain VP1881 SM00052 Putative diguanylate phosphodiesterase VP1889 SM00357 Cold shock protein domain VP1890 SM00316 Ribosomal protein S1-like RNA-binding domain VP1890 SM00955 VP1890 VP1892 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP1892 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP1896 SM00345 helix_turn_helix gluconate operon transcriptional repressor VP1902 SM00100 Cyclic nucleotide-monophosphate binding domain VP1902 SM00116 Domain in cystathionine beta-synthase and other proteins. VP1903 SM00479 VP1903 VP1904 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP1904 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP1906 SM00347 helix_turn_helix multiple antibiotic resistance protein VP1907 SM00421 helix_turn_helix, Lux Regulon VP1907 SM00448 cheY-homologous receiver domain VP1908 SM00387 Histidine kinase-like ATPases VP1908 SM01049 VP1908 VP1914 SM00849 Metallo-beta-lactamase superfamily VP1932 SM00434 DNA Topoisomerase IV VP1937 SM00852 Probable molybdopterin binding domain VP1944 SM00278 Helix-hairpin-helix DNA-binding motif class 1 VP1944 SM00465 GIY-YIG type nucleases (URI domain) VP1945 SM00421 helix_turn_helix, Lux Regulon VP1945 SM00448 cheY-homologous receiver domain VP1946 SM00486 DNA polymerase type-B family VP1948 SM00841 Elongation factor P, C-terminal VP1948 SM01185 VP1948 VP1951 SM00363 S4 RNA-binding domain VP1954 SM00481 DNA polymerase alpha chain like domain VP1962 SM00100 Cyclic nucleotide-monophosphate binding domain VP1962 SM00419 helix_turn_helix, cAMP Regulatory protein VP1968 SM00387 Histidine kinase-like ATPases VP1968 SM00388 His Kinase A (phosphoacceptor) domain VP1968 SM00448 cheY-homologous receiver domain VP1979 SM00052 Putative diguanylate phosphodiesterase VP1979 SM00091 PAS domain VP1980 SM00729 Elongator protein 3, MiaB family, Radical SAM VP1981 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP1981 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP1983 SM00448 cheY-homologous receiver domain VP1983 SM00862 Transcriptional regulatory protein, C terminal VP1984 SM00387 Histidine kinase-like ATPases VP1984 SM00388 His Kinase A (phosphoacceptor) domain VP1985 SM00220 Serine/Threonine protein kinases, catalytic domain VP1985 SM00364 Leucine-rich repeats, bacterial type VP1985 SM00369 Leucine-rich repeats, typical (most populated) subfamily VP1993 SM00342 helix_turn_helix, arabinose operon control protein VP1995 SM00382 ATPases associated with a variety of cellular activities VP2009 SM00421 helix_turn_helix, Lux Regulon VP2009 SM00448 cheY-homologous receiver domain VP2010 SM00387 Histidine kinase-like ATPases VP2010 SM00388 His Kinase A (phosphoacceptor) domain VP2014 SM00926 Molybdopterin oxidoreductase Fe4S4 domain VP2026 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family VP2027 SM00028 Tetratricopeptide repeats VP2029 SM00411 bacterial (prokaryotic) histone like domain VP2030 SM00316 Ribosomal protein S1-like RNA-binding domain VP2033 SM00822 VP2033 VP2036 SM00481 DNA polymerase alpha chain like domain VP2037 SM00260 Two component signalling adaptor domain VP2037 SM00448 cheY-homologous receiver domain VP2052 SM00825 Beta-ketoacyl synthase VP2054 SM00822 VP2054 VP2055 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. VP2061 SM00363 S4 RNA-binding domain VP2062 SM00316 Ribosomal protein S1-like RNA-binding domain VP2064 SM00226 Low molecular weight phosphatase family VP2071 SM00345 helix_turn_helix gluconate operon transcriptional repressor VP2076 SM00267 diguanylate cyclase VP2077 SM00642 Alpha-amylase domain VP2078 SM00382 ATPases associated with a variety of cellular activities VP2087 SM00382 ATPases associated with a variety of cellular activities VP2088 SM00382 ATPases associated with a variety of cellular activities VP2095 SM00852 Probable molybdopterin binding domain VP2096 SM00729 Elongator protein 3, MiaB family, Radical SAM VP2099 SM00382 ATPases associated with a variety of cellular activities VP2099 SM00448 cheY-homologous receiver domain VP2100 SM00487 DEAD-like helicases superfamily VP2100 SM00490 helicase superfamily c-terminal domain VP2106 SM00900 VP2106 VP2108 SM00478 endonuclease III VP2108 SM00525 VP2108 VP2114 SM00479 VP2114 VP2124 SM00859 Semialdehyde dehydrogenase, NAD binding domain VP2142 SM00382 ATPases associated with a variety of cellular activities VP2144 SM00530 Helix-turn-helix XRE-family like proteins VP2149 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain VP2149 SM00437 Bacterial DNA topoisomerase I DNA-binding domain VP2149 SM00493 VP2149 VP2153 SM00870 VP2153 VP2157 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VP2159 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP2163 SM00098 Alkaline phosphatase homologues VP2177 SM00493 VP2177 VP2179 SM00382 ATPases associated with a variety of cellular activities VP2183 SM00448 cheY-homologous receiver domain VP2192 SM00859 Semialdehyde dehydrogenase, NAD binding domain VP2194 SM00825 Beta-ketoacyl synthase VP2204 SM00463 Small MutS-related domain VP2205 SM00855 Phosphoglycerate mutase family VP2223 SM00382 ATPases associated with a variety of cellular activities VP2225 SM00260 Two component signalling adaptor domain VP2226 SM00260 Two component signalling adaptor domain VP2228 SM00448 cheY-homologous receiver domain VP2229 SM00073 Histidine Phosphotransfer domain VP2229 SM00260 Two component signalling adaptor domain VP2229 SM00387 Histidine kinase-like ATPases VP2229 SM01231 VP2229 VP2231 SM00448 cheY-homologous receiver domain VP2234 SM00382 ATPases associated with a variety of cellular activities VP2234 SM00962 SRP54-type protein, GTPase domain VP2246 SM00382 ATPases associated with a variety of cellular activities VP2251 SM00382 ATPases associated with a variety of cellular activities VP2251 SM00448 cheY-homologous receiver domain VP2252 SM00387 Histidine kinase-like ATPases VP2252 SM00388 His Kinase A (phosphoacceptor) domain VP2253 SM00382 ATPases associated with a variety of cellular activities VP2273 SM01130 VP2273 VP2278 SM00028 Tetratricopeptide repeats VP2292 SM00479 VP2292 VP2295 SM00849 Metallo-beta-lactamase superfamily VP2296 SM00257 Lysin motif VP2299 SM00938 Nitrogen regulatory protein P-II VP2301 SM00977 TilS substrate C-terminal domain VP2303 SM00481 DNA polymerase alpha chain like domain VP2309 SM00935 Outer membrane protein (OmpH-like) VP2311 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. VP2320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VP2338 SM00495 Chitin-binding domain type 3 VP2338 SM00636 VP2338 VP2340 SM00487 DEAD-like helicases superfamily VP2340 SM00490 helicase superfamily c-terminal domain VP2349 SM00900 VP2349 VP2360 SM00464 Found in ATP-dependent protease La (LON) VP2366 SM00267 diguanylate cyclase VP2369 SM00925 MltA specific insert domain VP2387 SM00420 helix_turn_helix, Deoxyribose operon repressor VP2387 SM01134 VP2387 VP2393 SM00354 helix_turn _helix lactose operon repressor VP2396 SM00354 helix_turn _helix lactose operon repressor VP2402 SM00354 helix_turn _helix lactose operon repressor VP2403 SM01038 Beta galactosidase small chain VP2409 SM00028 Tetratricopeptide repeats VP2420 SM00858 VP2420 VP2421 SM00382 ATPases associated with a variety of cellular activities VP2424 SM00342 helix_turn_helix, arabinose operon control protein VP2428 SM00838 Elongation factor G C-terminus VP2428 SM00889 Elongation factor G, domain IV VP2429 SM00382 ATPases associated with a variety of cellular activities VP2435 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain VP2436 SM01133 VP2436 VP2446 SM00052 Putative diguanylate phosphodiesterase VP2446 SM00091 PAS domain VP2446 SM00267 diguanylate cyclase VP2450 SM00347 helix_turn_helix multiple antibiotic resistance protein VP2451 SM00028 Tetratricopeptide repeats VP2452 SM00316 Ribosomal protein S1-like RNA-binding domain VP2452 SM00322 K homology RNA-binding domain VP2453 SM01387 VP2453 VP2457 SM00316 Ribosomal protein S1-like RNA-binding domain VP2463 SM00382 ATPases associated with a variety of cellular activities VP2465 SM01103 VP2465 VP2478 SM00091 PAS domain VP2478 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP2478 SM00387 Histidine kinase-like ATPases VP2478 SM00388 His Kinase A (phosphoacceptor) domain VP2478 SM00448 cheY-homologous receiver domain VP2482 SM00382 ATPases associated with a variety of cellular activities VP2483 SM00382 ATPases associated with a variety of cellular activities VP2487 SM01068 Putative carbohydrate binding domain VP2489 SM00382 ATPases associated with a variety of cellular activities VP2493 SM00938 Nitrogen regulatory protein P-II VP2498 SM00487 DEAD-like helicases superfamily VP2498 SM00490 helicase superfamily c-terminal domain VP2498 SM00847 Helicase associated domain (HA2) Add an annotation VP2511 SM00382 ATPases associated with a variety of cellular activities VP2514 SM00947 Carbonic anhydrase VP2520 SM00345 helix_turn_helix gluconate operon transcriptional repressor VP2520 SM00895 VP2520 VP2521 SM00644 VP2521 VP2534 SM00382 ATPases associated with a variety of cellular activities VP2534 SM00962 SRP54-type protein, GTPase domain VP2534 SM00963 SRP54-type protein, helical bundle domain VP2536 SM01091 Transporter associated domain VP2542 SM00829 Enoylreductase VP2548 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VP2550 SM00382 ATPases associated with a variety of cellular activities VP2552 SM00533 DNA-binding domain of DNA mismatch repair MUTS family VP2552 SM00534 ATPase domain of DNA mismatch repair MUTS family VP2554 SM00257 Lysin motif VP2561 SM01192 VP2561 VP2561 SM01193 VP2561 VP2564 SM00954 Region found in RelA / SpoT proteins VP2567 SM00073 Histidine Phosphotransfer domain VP2567 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP2567 SM00387 Histidine kinase-like ATPases VP2567 SM00388 His Kinase A (phosphoacceptor) domain VP2567 SM00448 cheY-homologous receiver domain VP2572 SM00358 Double-stranded RNA binding motif VP2572 SM00535 Ribonuclease III family VP2574 SM00838 Elongation factor G C-terminus VP2601 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VP2605 SM00861 Transketolase, pyrimidine binding domain VP2608 SM00731 SprT homologues. VP2613 SM00732 Likely ribonuclease with RNase H fold. VP2619 SM01152 VP2619 VP2622 SM00729 Elongator protein 3, MiaB family, Radical SAM VP2626 SM00478 endonuclease III VP2626 SM00525 VP2626 VP2629 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP2629 SM01049 VP2629 VP2631 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. VP2632 SM00354 helix_turn _helix lactose operon repressor VP2638 SM00495 Chitin-binding domain type 3 VP2657 SM00563 Phosphate acyltransferases VP2664 SM00382 ATPases associated with a variety of cellular activities VP2666 SM00116 Domain in cystathionine beta-synthase and other proteins. VP2669 SM00382 ATPases associated with a variety of cellular activities VP2675 SM00116 Domain in cystathionine beta-synthase and other proteins. VP2675 SM00924 MgtE intracellular N domain VP2682 SM00487 DEAD-like helicases superfamily VP2682 SM00490 helicase superfamily c-terminal domain VP2683 SM00670 Large family of predicted nucleotide-binding domains VP2687 SM00316 Ribosomal protein S1-like RNA-binding domain VP2701 SM00382 ATPases associated with a variety of cellular activities VP2702 SM00028 Tetratricopeptide repeats VP2704 SM00965 Secretin and TonB N terminus short domain VP2708 SM00052 Putative diguanylate phosphodiesterase VP2708 SM00267 diguanylate cyclase VP2710 SM00421 helix_turn_helix, Lux Regulon VP2717 SM01018 B12 binding domain VP2734 SM01005 Alanine racemase, C-terminal domain VP2746 SM00965 Secretin and TonB N terminus short domain VP2759 SM00859 Semialdehyde dehydrogenase, NAD binding domain VP2767 SM00919 Malic enzyme, NAD binding domain VP2767 SM01274 VP2767 VP2771 SM00838 Elongation factor G C-terminus VP2771 SM00889 Elongation factor G, domain IV VP2779 SM00320 WD40 repeats VP2788 SM00382 ATPases associated with a variety of cellular activities VP2793 SM00100 Cyclic nucleotide-monophosphate binding domain VP2793 SM00419 helix_turn_helix, cAMP Regulatory protein VP2794 SM01150 VP2794 VP2806 SM00967 RNA 2'-O ribose methyltransferase substrate binding VP2807 SM00316 Ribosomal protein S1-like RNA-binding domain VP2807 SM00357 Cold shock protein domain VP2807 SM00955 VP2807 VP2811 SM00671 Sel1-like repeats. VP2812 SM00788 Adenylosuccinate synthetase VP2814 SM00244 prohibitin homologues VP2815 SM00244 prohibitin homologues VP2819 SM00853 MutL C terminal dimerisation domain VP2819 SM01340 VP2819 VP2820 SM00257 Lysin motif VP2820 SM00646 VP2820 VP2823 SM00479 VP2823 VP2827 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). VP2827 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP2830 SM00450 Rhodanese Homology Domain VP2833 SM00971 Serine acetyltransferase, N-terminal VP2845 SM00841 Elongation factor P, C-terminal VP2845 SM01185 VP2845 VP2848 SM01005 Alanine racemase, C-terminal domain VP2852 SM00883 Chaperonin 10 Kd subunit VP2858 SM00448 cheY-homologous receiver domain VP2858 SM00862 Transcriptional regulatory protein, C terminal VP2859 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VP2859 SM00387 Histidine kinase-like ATPases VP2859 SM00388 His Kinase A (phosphoacceptor) domain VP2866 SM00421 helix_turn_helix, Lux Regulon VP2866 SM00448 cheY-homologous receiver domain VP2867 SM01091 Transporter associated domain VP2874 SM00387 Histidine kinase-like ATPases VP2874 SM00388 His Kinase A (phosphoacceptor) domain VP2874 SM00448 cheY-homologous receiver domain VP2877 SM00479 VP2877 VP2881 SM00878 Biotin carboxylase C-terminal domain VP2887 SM00382 ATPases associated with a variety of cellular activities VP2888 SM00267 diguanylate cyclase VP2893 SM00862 Transcriptional regulatory protein, C terminal VP2894 SM00422 helix_turn_helix, mercury resistance VP2896 SM00798 AICARFT/IMPCHase bienzyme VP2896 SM00851 MGS-like domain VP2898 SM01209 VP2898 VP2898 SM01210 VP2898 VP2911 SM00411 bacterial (prokaryotic) histone like domain VP2915 SM00986 Uracil DNA glycosylase superfamily VP2915 SM00987 UreE urease accessory protein, C-terminal domain VP2921 SM00663 RNA polymerase I subunit A N-terminus VP2926 SM00649 Ribosomal protein L11/L12 VP2927 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. VP2927 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. VP2934 SM00155 Phospholipase D. Active site motifs. VP2935 SM00360 RNA recognition motif VP2947 SM00563 Phosphate acyltransferases VP2952 SM00450 Rhodanese Homology Domain VP2955 SM00382 ATPases associated with a variety of cellular activities VP2956 SM00382 ATPases associated with a variety of cellular activities VP2956 SM00962 SRP54-type protein, GTPase domain VP2956 SM00963 SRP54-type protein, helical bundle domain VP2970 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VP2971 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor VP2972 SM00052 Putative diguanylate phosphodiesterase VP2978 SM01144 VP2978 VP2979 SM00052 Putative diguanylate phosphodiesterase VP2979 SM00897 FIST N domain VP2979 SM01204 VP2979 VP2986 SM01219 VP2986 VP2991 SM00028 Tetratricopeptide repeats VP3000 SM00357 Cold shock protein domain VP3000 SM00382 ATPases associated with a variety of cellular activities VP3000 SM00959 Rho termination factor, N-terminal domain VP3002 SM00487 DEAD-like helicases superfamily VP3002 SM00490 helicase superfamily c-terminal domain VP3007 SM00341 Helicase and RNase D C-terminal VP3007 SM00487 DEAD-like helicases superfamily VP3007 SM00490 helicase superfamily c-terminal domain VP3007 SM00956 VP3007 VP3009 SM00342 helix_turn_helix, arabinose operon control protein VP3022 SM00876 Biotin and Thiamin Synthesis associated domain VP3036 SM01001 AIR carboxylase VP3041 SM00257 Lysin motif VP3055 SM00563 Phosphate acyltransferases VP3057 SM00382 ATPases associated with a variety of cellular activities VP3065 SM00062 Bacterial periplasmic substrate-binding proteins VP3069 SM00382 ATPases associated with a variety of cellular activities VP3077 SM00470 ParB-like nuclease domain VP3080 SM01228 VP3080 VPA0120 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs VPA0120 SM00475 5'-3' exonuclease VPA0121 SM00474 3'-5' exonuclease VPA0132 SM00052 Putative diguanylate phosphodiesterase VPA0133 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain VPA0135 SM00382 ATPases associated with a variety of cellular activities VPA0172 SM00490 helicase superfamily c-terminal domain VPA0428 SM01118 VPA0428 VPA0514 SM00490 helicase superfamily c-terminal domain VPA1278 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain VPA1293 SM00873 B3/4 domain VPA1391 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) VPA1428 SM00220 Serine/Threonine protein kinases, catalytic domain VPA1557 SM00388 His Kinase A (phosphoacceptor) domain