locus-tag class description VP_RS00005 PF00258 Flavodoxin VP_RS00010 PF10396 GTP-binding protein TrmE N-terminus VP_RS00010 PF01926 50S ribosome-binding GTPase VP_RS00010 PF12631 MnmE helical domain VP_RS00015 PF14849 YidC periplasmic domain VP_RS00015 PF02096 60Kd inner membrane protein VP_RS00020 PF01809 Putative membrane protein insertion efficiency factor VP_RS00025 PF00825 Ribonuclease P VP_RS00030 PF00468 Ribosomal protein L34 VP_RS00035 PF00005 ABC transporter VP_RS00040 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS00045 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP_RS00050 PF00308 Bacterial dnaA protein VP_RS00050 PF08299 Bacterial dnaA protein helix-turn-helix VP_RS00050 PF11638 DnaA N-terminal domain VP_RS00055 PF00712 DNA polymerase III beta subunit, N-terminal domain VP_RS00055 PF02768 DNA polymerase III beta subunit, C-terminal domain VP_RS00055 PF02767 DNA polymerase III beta subunit, central domain VP_RS00060 PF02463 RecF/RecN/SMC N terminal domain VP_RS00065 PF00986 DNA gyrase B subunit, carboxyl terminus VP_RS00065 PF18053 DNA gyrase B subunit insert domain VP_RS00065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS00065 PF01751 Toprim domain VP_RS00065 PF00204 DNA gyrase B VP_RS00075 PF00011 Hsp20/alpha crystallin family VP_RS00080 PF00155 Aminotransferase class I and II VP_RS00085 PF00128 Alpha amylase, catalytic domain VP_RS00090 PF05746 DALR anticodon binding domain VP_RS00090 PF02092 Glycyl-tRNA synthetase beta subunit VP_RS00095 PF02091 Glycyl-tRNA synthetase alpha subunit VP_RS00100 PF01169 Uncharacterized protein family UPF0016 VP_RS00110 PF01206 Sulfurtransferase TusA VP_RS00120 PF03466 LysR substrate binding domain VP_RS00120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS00125 PF08240 Alcohol dehydrogenase GroES-like domain VP_RS00125 PF00107 Zinc-binding dehydrogenase VP_RS00130 PF02803 Thiolase, C-terminal domain VP_RS00130 PF00108 Thiolase, N-terminal domain VP_RS00135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VP_RS00135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VP_RS00135 PF00378 Enoyl-CoA hydratase/isomerase VP_RS00140 PF01205 Uncharacterized protein family UPF0029 VP_RS00140 PF09186 Domain of unknown function (DUF1949) VP_RS00145 PF02386 Cation transport protein VP_RS00150 PF12724 Flavodoxin domain VP_RS00185 PF03466 LysR substrate binding domain VP_RS00185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS00190 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VP_RS00190 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VP_RS00195 PF04380 Membrane fusogenic activity VP_RS00200 PF00873 AcrB/AcrD/AcrF family VP_RS00205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS00210 PF00440 Bacterial regulatory proteins, tetR family VP_RS00210 PF16295 Tetracyclin repressor-like, C-terminal domain VP_RS00215 PF00580 UvrD/REP helicase N-terminal domain VP_RS00215 PF13361 UvrD-like helicase C-terminal domain VP_RS00220 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VP_RS00250 PF13419 Haloacid dehalogenase-like hydrolase VP_RS00255 PF00005 ABC transporter VP_RS00255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP_RS00260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP_RS00270 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS00270 PF12911 N-terminal TM domain of oligopeptide transport permease C VP_RS00300 PF00069 Protein kinase domain VP_RS00305 PF00356 Bacterial regulatory proteins, lacI family VP_RS00305 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VP_RS00310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS00310 PF03466 LysR substrate binding domain VP_RS00315 PF00893 Small Multidrug Resistance protein VP_RS00320 PF00893 Small Multidrug Resistance protein VP_RS00325 PF00920 Dehydratase family VP_RS00330 PF01202 Shikimate kinase VP_RS00335 PF02447 GntP family permease VP_RS00340 PF01081 KDPG and KHG aldolase VP_RS00345 PF01048 Phosphorylase superfamily VP_RS00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS00350 PF03466 LysR substrate binding domain VP_RS00355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VP_RS00355 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS00360 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VP_RS00365 PF01432 Peptidase family M3 VP_RS00370 PF01037 Lrp/AsnC ligand binding domain VP_RS00375 PF00990 Diguanylate cyclase, GGDEF domain VP_RS00375 PF08448 PAS fold VP_RS00375 PF00563 EAL domain VP_RS00380 PF04445 Putative SAM-dependent methyltransferase VP_RS00390 PF00892 EamA-like transporter family VP_RS00395 PF00582 Universal stress protein family VP_RS00400 PF00210 Ferritin-like domain VP_RS00405 PF10625 Universal stress protein B (UspB) VP_RS00415 PF00158 Sigma-54 interaction domain VP_RS00415 PF02954 Bacterial regulatory protein, Fis family VP_RS00415 PF01590 GAF domain VP_RS00440 PF00781 Diacylglycerol kinase catalytic domain VP_RS00470 PF01594 AI-2E family transporter VP_RS00475 PF00563 EAL domain VP_RS00475 PF00990 Diguanylate cyclase, GGDEF domain VP_RS00475 PF03707 Bacterial signalling protein N terminal repeat VP_RS00485 PF02646 RmuC family VP_RS00490 PF01209 ubiE/COQ5 methyltransferase family VP_RS00495 PF02036 SCP-2 sterol transfer family VP_RS00500 PF03109 ABC1 family VP_RS00505 PF02416 mttA/Hcf106 family VP_RS00510 PF02416 mttA/Hcf106 family VP_RS00515 PF00902 Sec-independent protein translocase protein (TatC) VP_RS00520 PF01026 TatD related DNase VP_RS00525 PF00490 Delta-aminolevulinic acid dehydratase VP_RS00535 PF01612 3'-5' exonuclease VP_RS00535 PF01367 5'-3' exonuclease, C-terminal SAM fold VP_RS00535 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VP_RS00535 PF00476 DNA polymerase family A VP_RS00540 PF01926 50S ribosome-binding GTPase VP_RS00545 PF00034 Cytochrome c VP_RS00555 PF04220 Der GTPase activator (YihI) VP_RS00560 PF10675 Protein of unknown function (DUF2489) VP_RS00565 PF06969 HemN C-terminal domain VP_RS00565 PF04055 Radical SAM superfamily VP_RS00570 PF00962 Adenosine/AMP deaminase VP_RS00575 PF00563 EAL domain VP_RS00575 PF03707 Bacterial signalling protein N terminal repeat VP_RS00575 PF00990 Diguanylate cyclase, GGDEF domain VP_RS00580 PF00158 Sigma-54 interaction domain VP_RS00580 PF02954 Bacterial regulatory protein, Fis family VP_RS00580 PF00072 Response regulator receiver domain VP_RS00585 PF00512 His Kinase A (phospho-acceptor) domain VP_RS00585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS00585 PF00989 PAS fold VP_RS00595 PF00120 Glutamine synthetase, catalytic domain VP_RS00595 PF03951 Glutamine synthetase, beta-Grasp domain VP_RS00615 PF03631 Virulence factor BrkB VP_RS00620 PF02580 D-Tyr-tRNA(Tyr) deacylase VP_RS00625 PF00583 Acetyltransferase (GNAT) family VP_RS00625 PF09500 Putative thioesterase (yiiD_Cterm) VP_RS00635 PF01293 Phosphoenolpyruvate carboxykinase VP_RS00640 PF01430 Hsp33 protein VP_RS00645 PF01479 S4 domain VP_RS00650 PF11356 Type II secretion system protein C VP_RS00655 PF03958 Bacterial type II/III secretion system short domain VP_RS00655 PF00263 Bacterial type II and III secretion system protein VP_RS00660 PF00437 Type II/IV secretion system protein VP_RS00665 PF00482 Type II secretion system (T2SS), protein F VP_RS00670 PF07963 Prokaryotic N-terminal methylation motif VP_RS00670 PF08334 Type II secretion system (T2SS), protein G VP_RS00675 PF12019 Type II transport protein GspH VP_RS00680 PF02501 Type II secretion system (T2SS), protein I VP_RS00680 PF07963 Prokaryotic N-terminal methylation motif VP_RS00685 PF07963 Prokaryotic N-terminal methylation motif VP_RS00685 PF11612 Type II secretion system (T2SS), protein J VP_RS00690 PF03934 Type II secretion system (T2SS), protein K VP_RS00695 PF12693 GspL periplasmic domain VP_RS00695 PF05134 Type II secretion system (T2SS), protein L VP_RS00700 PF04612 Type II secretion system (T2SS), protein M VP_RS00705 PF01203 Type II secretion system (T2SS), protein N VP_RS00710 PF00459 Inositol monophosphatase family VP_RS00715 PF00293 NUDIX domain VP_RS00720 PF01521 Iron-sulphur cluster biosynthesis VP_RS00720 PF01106 NifU-like domain VP_RS00725 PF00156 Phosphoribosyl transferase domain VP_RS00730 PF00561 alpha/beta hydrolase fold VP_RS00740 PF16921 Tex protein YqgF-like domain VP_RS00740 PF09371 Tex-like protein N-terminal domain VP_RS00740 PF17674 HHH domain VP_RS00740 PF00575 S1 RNA binding domain VP_RS00750 PF03449 Transcription elongation factor, N-terminal VP_RS00750 PF01272 Transcription elongation factor, GreA/GreB, C-term VP_RS00760 PF00486 Transcriptional regulatory protein, C terminal VP_RS00760 PF00072 Response regulator receiver domain VP_RS00765 PF00672 HAMP domain VP_RS00765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS00765 PF00512 His Kinase A (phospho-acceptor) domain VP_RS00770 PF00860 Permease family VP_RS00775 PF00271 Helicase conserved C-terminal domain VP_RS00775 PF00270 DEAD/DEAH box helicase VP_RS00775 PF17191 RecG wedge domain VP_RS00780 PF12105 SpoU, rRNA methylase, C-terminal VP_RS00780 PF00588 SpoU rRNA Methylase family VP_RS00785 PF13291 ACT domain VP_RS00785 PF04607 Region found in RelA / SpoT proteins VP_RS00785 PF02824 TGS domain VP_RS00790 PF01192 RNA polymerase Rpb6 VP_RS00795 PF00625 Guanylate kinase VP_RS00810 PF02472 Biopolymer transport protein ExbD/TolR VP_RS00815 PF01618 MotA/TolQ/ExbB proton channel family VP_RS00830 PF00593 TonB dependent receptor VP_RS00830 PF07715 TonB-dependent Receptor Plug Domain VP_RS00835 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS00840 PF12911 N-terminal TM domain of oligopeptide transport permease C VP_RS00840 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS00845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP_RS00850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP_RS00850 PF00005 ABC transporter VP_RS00865 PF08340 Domain of unknown function (DUF1732) VP_RS00865 PF03755 YicC-like family, N-terminal region VP_RS00870 PF03725 3' exoribonuclease family, domain 2 VP_RS00870 PF01138 3' exoribonuclease family, domain 1 VP_RS00875 PF00156 Phosphoribosyl transferase domain VP_RS00880 PF03279 Bacterial lipid A biosynthesis acyltransferase VP_RS00885 PF00440 Bacterial regulatory proteins, tetR family VP_RS00890 PF02441 Flavoprotein VP_RS00890 PF04127 DNA / pantothenate metabolism flavoprotein VP_RS00895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS00895 PF00672 HAMP domain VP_RS00895 PF17200 Single Cache domain 2 VP_RS00900 PF04002 RadC-like JAB domain VP_RS00905 PF00830 Ribosomal L28 family VP_RS00910 PF00471 Ribosomal protein L33 VP_RS00915 PF00884 Sulfatase VP_RS00925 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VP_RS00925 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VP_RS00925 PF06827 Zinc finger found in FPG and IleRS VP_RS00930 PF01467 Cytidylyltransferase-like VP_RS00935 PF05686 Glycosyl transferase family 90 VP_RS00940 PF00535 Glycosyl transferase family 2 VP_RS00945 PF00535 Glycosyl transferase family 2 VP_RS00950 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VP_RS00955 PF01219 Prokaryotic diacylglycerol kinase VP_RS00965 PF02719 Polysaccharide biosynthesis protein VP_RS00970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VP_RS00975 PF02350 UDP-N-acetylglucosamine 2-epimerase VP_RS00980 PF03102 NeuB family VP_RS00980 PF08666 SAF domain VP_RS00990 PF00483 Nucleotidyl transferase VP_RS00995 PF13472 GDSL-like Lipase/Acylhydrolase family VP_RS00995 PF02348 Cytidylyltransferase VP_RS01005 PF00202 Aminotransferase class-III VP_RS01010 PF00795 Carbon-nitrogen hydrolase VP_RS01035 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VP_RS01040 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VP_RS01045 PF03279 Bacterial lipid A biosynthesis acyltransferase VP_RS01050 PF01370 NAD dependent epimerase/dehydratase family VP_RS01055 PF06082 Exopolysaccharide biosynthesis protein YbjH VP_RS01090 PF16363 GDP-mannose 4,6 dehydratase VP_RS01095 PF00483 Nucleotidyl transferase VP_RS01125 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VP_RS01135 PF02397 Bacterial sugar transferase VP_RS01150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VP_RS01155 PF02719 Polysaccharide biosynthesis protein VP_RS01160 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VP_RS01160 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VP_RS01160 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VP_RS01165 PF00483 Nucleotidyl transferase VP_RS01170 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VP_RS01170 PF00753 Metallo-beta-lactamase superfamily VP_RS01170 PF10996 Beta-Casp domain VP_RS01175 PF00121 Triosephosphate isomerase VP_RS01195 PF00455 DeoR C terminal sensor domain VP_RS01195 PF08220 DeoR-like helix-turn-helix domain VP_RS01200 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VP_RS01205 PF06005 Cell division protein ZapB VP_RS01210 PF03737 Aldolase/RraA VP_RS01215 PF01040 UbiA prenyltransferase family VP_RS01220 PF00004 ATPase family associated with various cellular activities (AAA) VP_RS01220 PF07724 AAA domain (Cdc48 subfamily) VP_RS01225 PF00227 Proteasome subunit VP_RS01235 PF00356 Bacterial regulatory proteins, lacI family VP_RS01240 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VP_RS01240 PF00271 Helicase conserved C-terminal domain VP_RS01240 PF17764 3′ DNA-binding domain (3′BD) VP_RS01240 PF18074 Primosomal protein N C-terminal domain VP_RS01240 PF00270 DEAD/DEAH box helicase VP_RS01245 PF01197 Ribosomal protein L31 VP_RS01250 PF00338 Ribosomal protein S10p/S20e VP_RS01255 PF00297 Ribosomal protein L3 VP_RS01260 PF00573 Ribosomal protein L4/L1 family VP_RS01265 PF00276 Ribosomal protein L23 VP_RS01270 PF00181 Ribosomal Proteins L2, RNA binding domain VP_RS01270 PF03947 Ribosomal Proteins L2, C-terminal domain VP_RS01275 PF00203 Ribosomal protein S19 VP_RS01280 PF00237 Ribosomal protein L22p/L17e VP_RS01285 PF00189 Ribosomal protein S3, C-terminal domain VP_RS01285 PF07650 KH domain VP_RS01290 PF00252 Ribosomal protein L16p/L10e VP_RS01295 PF00831 Ribosomal L29 protein VP_RS01300 PF00366 Ribosomal protein S17 VP_RS01305 PF00238 Ribosomal protein L14p/L23e VP_RS01310 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VP_RS01310 PF00467 KOW motif VP_RS01315 PF00673 ribosomal L5P family C-terminus VP_RS01315 PF00281 Ribosomal protein L5 VP_RS01320 PF00253 Ribosomal protein S14p/S29e VP_RS01325 PF00410 Ribosomal protein S8 VP_RS01330 PF00347 Ribosomal protein L6 VP_RS01335 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VP_RS01340 PF03719 Ribosomal protein S5, C-terminal domain VP_RS01340 PF00333 Ribosomal protein S5, N-terminal domain VP_RS01345 PF00327 Ribosomal protein L30p/L7e VP_RS01350 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VP_RS01355 PF00344 SecY translocase VP_RS01360 PF00444 Ribosomal protein L36 VP_RS01365 PF00416 Ribosomal protein S13/S18 VP_RS01370 PF00411 Ribosomal protein S11 VP_RS01375 PF01479 S4 domain VP_RS01375 PF00163 Ribosomal protein S4/S9 N-terminal domain VP_RS01380 PF01000 RNA polymerase Rpb3/RpoA insert domain VP_RS01380 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VP_RS01380 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VP_RS01385 PF01196 Ribosomal protein L17 VP_RS01395 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VP_RS01395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VP_RS01405 PF13673 Acetyltransferase (GNAT) domain VP_RS01410 PF00271 Helicase conserved C-terminal domain VP_RS01410 PF00270 DEAD/DEAH box helicase VP_RS01410 PF03880 DbpA RNA binding domain VP_RS01420 PF00149 Calcineurin-like phosphoesterase VP_RS01420 PF02872 5'-nucleotidase, C-terminal domain VP_RS01425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VP_RS01425 PF14824 Sirohaem biosynthesis protein central VP_RS01425 PF10414 Sirohaem synthase dimerisation region VP_RS01430 PF01507 Phosphoadenosine phosphosulfate reductase family VP_RS01435 PF00009 Elongation factor Tu GTP binding domain VP_RS01440 PF03600 Citrate transporter VP_RS01440 PF02080 TrkA-C domain VP_RS01465 PF00005 ABC transporter VP_RS01475 PF10795 Protein of unknown function (DUF2607) VP_RS01480 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VP_RS01485 PF06526 Protein of unknown function (DUF1107) VP_RS01490 PF01625 Peptide methionine sulfoxide reductase VP_RS01495 PF17243 POTRA domain TamA domain 1 VP_RS01495 PF01103 Surface antigen VP_RS01500 PF04357 TamB, inner membrane protein subunit of TAM complex VP_RS01505 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VP_RS01515 PF00719 Inorganic pyrophosphatase VP_RS01520 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VP_RS01525 PF02875 Mur ligase family, glutamate ligase domain VP_RS01525 PF01225 Mur ligase family, catalytic domain VP_RS01525 PF08245 Mur ligase middle domain VP_RS01530 PF02441 Flavoprotein VP_RS01540 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS01545 PF00005 ABC transporter VP_RS01560 PF16868 NMT1-like family VP_RS01565 PF01316 Arginine repressor, DNA binding domain VP_RS01565 PF02863 Arginine repressor, C-terminal domain VP_RS01570 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VP_RS01570 PF00056 lactate/malate dehydrogenase, NAD binding domain VP_RS01580 PF00348 Polyprenyl synthetase VP_RS01585 PF00829 Ribosomal prokaryotic L21 protein VP_RS01590 PF01016 Ribosomal L27 protein VP_RS01595 PF01926 50S ribosome-binding GTPase VP_RS01595 PF01018 GTP1/OBG VP_RS01600 PF06738 Putative threonine/serine exporter VP_RS01605 PF12821 Threonine/Serine exporter, ThrE VP_RS01610 PF00186 Dihydrofolate reductase VP_RS01615 PF00149 Calcineurin-like phosphoesterase VP_RS01620 PF04379 ApaG domain VP_RS01625 PF00398 Ribosomal RNA adenine dimethylase VP_RS01630 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VP_RS01635 PF09312 SurA N-terminal domain VP_RS01640 PF04453 LPS transport system D VP_RS01640 PF03968 OstA-like protein VP_RS01645 PF00226 DnaJ domain VP_RS01645 PF05099 Tellurite resistance protein TerB VP_RS01655 PF00694 Aconitase C-terminal domain VP_RS01660 PF00330 Aconitase family (aconitate hydratase) VP_RS01665 PF00180 Isocitrate/isopropylmalate dehydrogenase VP_RS01670 PF00682 HMGL-like VP_RS01670 PF08502 LeuA allosteric (dimerisation) domain VP_RS01680 PF01569 PAP2 superfamily VP_RS01690 PF03466 LysR substrate binding domain VP_RS01690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS01695 PF00501 AMP-binding enzyme VP_RS01700 PF00205 Thiamine pyrophosphate enzyme, central domain VP_RS01700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VP_RS01700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VP_RS01705 PF10369 Small subunit of acetolactate synthase VP_RS01710 PF00990 Diguanylate cyclase, GGDEF domain VP_RS01710 PF07694 5TMR of 5TMR-LYT VP_RS01720 PF02887 Pyruvate kinase, alpha/beta domain VP_RS01720 PF00224 Pyruvate kinase, barrel domain VP_RS01725 PF00455 DeoR C terminal sensor domain VP_RS01725 PF08220 DeoR-like helix-turn-helix domain VP_RS01730 PF01380 SIS domain VP_RS01740 PF00486 Transcriptional regulatory protein, C terminal VP_RS01740 PF00072 Response regulator receiver domain VP_RS01745 PF00672 HAMP domain VP_RS01745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS01745 PF00512 His Kinase A (phospho-acceptor) domain VP_RS01750 PF00465 Iron-containing alcohol dehydrogenase VP_RS01755 PF02733 Dak1 domain VP_RS01760 PF02734 DAK2 domain VP_RS01765 PF05524 PEP-utilising enzyme, N-terminal VP_RS01765 PF00391 PEP-utilising enzyme, mobile domain VP_RS01765 PF02896 PEP-utilising enzyme, TIM barrel domain VP_RS01770 PF02954 Bacterial regulatory protein, Fis family VP_RS01770 PF00989 PAS fold VP_RS01770 PF00158 Sigma-54 interaction domain VP_RS01775 PF05068 Mannitol repressor VP_RS01780 PF08125 Mannitol dehydrogenase C-terminal domain VP_RS01780 PF01232 Mannitol dehydrogenase Rossmann domain VP_RS01785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VP_RS01785 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VP_RS01785 PF02378 Phosphotransferase system, EIIC VP_RS01815 PF12833 Helix-turn-helix domain VP_RS01825 PF03180 NLPA lipoprotein VP_RS01860 PF01420 Type I restriction modification DNA specificity domain VP_RS01865 PF02384 N-6 DNA Methylase VP_RS01865 PF12161 HsdM N-terminal domain VP_RS01885 PF01555 DNA methylase VP_RS01890 PF08463 EcoEI R protein C-terminal VP_RS01890 PF00271 Helicase conserved C-terminal domain VP_RS01890 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) VP_RS01890 PF04851 Type III restriction enzyme, res subunit VP_RS01915 PF13657 HipA N-terminal domain VP_RS01915 PF07804 HipA-like C-terminal domain VP_RS01930 PF04545 Sigma-70, region 4 VP_RS01930 PF04539 Sigma-70 region 3 VP_RS01930 PF04542 Sigma-70 region 2 VP_RS01930 PF03979 Sigma-70 factor, region 1.1 VP_RS01930 PF00140 Sigma-70 factor, region 1.2 VP_RS01930 PF04546 Sigma-70, non-essential region VP_RS01935 PF10410 DnaB-helicase binding domain of primase VP_RS01935 PF08278 DNA primase DnaG DnaB-binding VP_RS01935 PF08275 DNA primase catalytic core, N-terminal domain VP_RS01935 PF01807 CHC2 zinc finger VP_RS01940 PF09424 Yqey-like protein VP_RS01945 PF01165 Ribosomal protein S21 VP_RS01950 PF00814 Glycoprotease family VP_RS01955 PF12697 Alpha/beta hydrolase family VP_RS01960 PF02660 Glycerol-3-phosphate acyltransferase VP_RS01965 PF02152 Dihydroneopterin aldolase VP_RS01970 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VP_RS01975 PF02673 Bacitracin resistance protein BacA VP_RS01980 PF12627 Probable RNA and SrmB- binding site of polymerase A VP_RS01980 PF01966 HD domain VP_RS01980 PF01743 Poly A polymerase head domain VP_RS01985 PF01471 Putative peptidoglycan binding domain VP_RS01985 PF13401 AAA domain VP_RS01995 PF08239 Bacterial SH3 domain VP_RS02000 PF01384 Phosphate transporter family VP_RS02005 PF01865 Protein of unknown function DUF47 VP_RS02010 PF01928 CYTH domain VP_RS02020 PF00672 HAMP domain VP_RS02020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS02025 PF08335 GlnD PII-uridylyltransferase VP_RS02025 PF03710 Glutamate-ammonia ligase adenylyltransferase VP_RS02030 PF01467 Cytidylyltransferase-like VP_RS02030 PF00294 pfkB family carbohydrate kinase VP_RS02035 PF02321 Outer membrane efflux protein VP_RS02040 PF00293 NUDIX domain VP_RS02045 PF06853 Protein of unknown function (DUF1249) VP_RS02050 PF00149 Calcineurin-like phosphoesterase VP_RS02055 PF05728 Uncharacterised protein family (UPF0227) VP_RS02060 PF00204 DNA gyrase B VP_RS02060 PF00986 DNA gyrase B subunit, carboxyl terminus VP_RS02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS02060 PF01751 Toprim domain VP_RS02065 PF00521 DNA gyrase/topoisomerase IV, subunit A VP_RS02065 PF03989 DNA gyrase C-terminal domain, beta-propeller VP_RS02070 PF13180 PDZ domain VP_RS02075 PF00595 PDZ domain VP_RS02080 PF06295 Protein of unknown function (DUF1043) VP_RS02085 PF03969 AFG1-like ATPase VP_RS02090 PF00572 Ribosomal protein L13 VP_RS02095 PF00380 Ribosomal protein S9/S16 VP_RS02100 PF00355 Rieske [2Fe-2S] domain VP_RS02100 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VP_RS02105 PF00032 Cytochrome b(C-terminal)/b6/petD VP_RS02105 PF00033 Cytochrome b/b6/petB VP_RS02110 PF02167 Cytochrome C1 family VP_RS02115 PF02798 Glutathione S-transferase, N-terminal domain VP_RS02115 PF00043 Glutathione S-transferase, C-terminal domain VP_RS02120 PF04386 Stringent starvation protein B VP_RS02125 PF04972 BON domain VP_RS02130 PF13580 SIS domain VP_RS02135 PF02021 Uncharacterised protein family UPF0102 VP_RS02140 PF04348 LppC putative lipoprotein VP_RS02145 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VP_RS02155 PF01795 MraW methylase family VP_RS02160 PF04999 Cell division protein FtsL VP_RS02165 PF00905 Penicillin binding protein transpeptidase domain VP_RS02165 PF03717 Penicillin-binding Protein dimerisation domain VP_RS02170 PF08245 Mur ligase middle domain VP_RS02170 PF02875 Mur ligase family, glutamate ligase domain VP_RS02170 PF01225 Mur ligase family, catalytic domain VP_RS02175 PF01225 Mur ligase family, catalytic domain VP_RS02175 PF08245 Mur ligase middle domain VP_RS02175 PF02875 Mur ligase family, glutamate ligase domain VP_RS02180 PF00953 Glycosyl transferase family 4 VP_RS02180 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VP_RS02185 PF02875 Mur ligase family, glutamate ligase domain VP_RS02185 PF08245 Mur ligase middle domain VP_RS02190 PF01098 Cell cycle protein VP_RS02195 PF04101 Glycosyltransferase family 28 C-terminal domain VP_RS02195 PF03033 Glycosyltransferase family 28 N-terminal domain VP_RS02200 PF02875 Mur ligase family, glutamate ligase domain VP_RS02200 PF08245 Mur ligase middle domain VP_RS02200 PF01225 Mur ligase family, catalytic domain VP_RS02205 PF03799 Cell division protein FtsQ VP_RS02205 PF08478 POTRA domain, FtsQ-type VP_RS02210 PF02491 SHS2 domain inserted in FTSA VP_RS02215 PF12327 FtsZ family, C-terminal domain VP_RS02215 PF00091 Tubulin/FtsZ family, GTPase domain VP_RS02220 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VP_RS02230 PF07516 SecA Wing and Scaffold domain VP_RS02230 PF07517 SecA DEAD-like domain VP_RS02230 PF02810 SEC-C motif VP_RS02230 PF01043 SecA preprotein cross-linking domain VP_RS02235 PF00293 NUDIX domain VP_RS02240 PF05173 Dihydrodipicolinate reductase, C-terminus VP_RS02240 PF01113 Dihydrodipicolinate reductase, N-terminus VP_RS02245 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VP_RS02245 PF00117 Glutamine amidotransferase class-I VP_RS02250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VP_RS02250 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VP_RS02250 PF02142 MGS-like domain VP_RS02265 PF01925 Sulfite exporter TauE/SafE VP_RS02270 PF03466 LysR substrate binding domain VP_RS02270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS02275 PF03458 UPF0126 domain VP_RS02280 PF01497 Periplasmic binding protein VP_RS02285 PF17113 Regulatory signalling modulator protein AmpE VP_RS02285 PF03186 CobD/Cbib protein VP_RS02290 PF01048 Phosphorylase superfamily VP_RS02300 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS02300 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VP_RS02305 PF00310 Glutamine amidotransferases class-II VP_RS02305 PF04898 Glutamate synthase central domain VP_RS02305 PF01493 GXGXG motif VP_RS02305 PF01645 Conserved region in glutamate synthase VP_RS02310 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS02310 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VP_RS02315 PF04898 Glutamate synthase central domain VP_RS02315 PF01493 GXGXG motif VP_RS02315 PF00310 Glutamine amidotransferases class-II VP_RS02315 PF01645 Conserved region in glutamate synthase VP_RS02320 PF04055 Radical SAM superfamily VP_RS02320 PF16199 Radical_SAM C-terminal domain VP_RS02325 PF00990 Diguanylate cyclase, GGDEF domain VP_RS02325 PF00563 EAL domain VP_RS02325 PF01590 GAF domain VP_RS02325 PF00360 Phytochrome region VP_RS02330 PF00072 Response regulator receiver domain VP_RS02330 PF00989 PAS fold VP_RS02330 PF01627 Hpt domain VP_RS02330 PF00512 His Kinase A (phospho-acceptor) domain VP_RS02330 PF18415 Histidine kinase receptor ArcB trans-membrane domain VP_RS02330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS02340 PF00072 Response regulator receiver domain VP_RS02340 PF00486 Transcriptional regulatory protein, C terminal VP_RS02350 PF03737 Aldolase/RraA VP_RS02360 PF00742 Homoserine dehydrogenase VP_RS02360 PF13840 ACT domain VP_RS02360 PF01842 ACT domain VP_RS02360 PF00696 Amino acid kinase family VP_RS02360 PF03447 Homoserine dehydrogenase, NAD binding domain VP_RS02365 PF00288 GHMP kinases N terminal domain VP_RS02365 PF08544 GHMP kinases C terminal VP_RS02370 PF00291 Pyridoxal-phosphate dependent enzyme VP_RS02370 PF14821 Threonine synthase N terminus VP_RS02375 PF01228 Glycine radical VP_RS02380 PF01261 Xylose isomerase-like TIM barrel VP_RS02385 PF03167 Uracil DNA glycosylase superfamily VP_RS02400 PF01235 Sodium:alanine symporter family VP_RS02405 PF03883 Peroxide stress protein YaaA VP_RS02410 PF00271 Helicase conserved C-terminal domain VP_RS02410 PF00270 DEAD/DEAH box helicase VP_RS02415 PF05175 Methyltransferase small domain VP_RS02420 PF05525 Branched-chain amino acid transport protein VP_RS02425 PF00258 Flavodoxin VP_RS02430 PF02899 Phage integrase, N-terminal SAM-like domain VP_RS02430 PF00589 Phage integrase family VP_RS02435 PF10411 Disulfide bond isomerase protein N-terminus VP_RS02435 PF13098 Thioredoxin-like domain VP_RS02440 PF01368 DHH family VP_RS02440 PF02272 DHHA1 domain VP_RS02440 PF17768 RecJ OB domain VP_RS02450 PF01336 OB-fold nucleic acid binding domain VP_RS02450 PF00152 tRNA synthetases class II (D, K and N) VP_RS02455 PF02954 Bacterial regulatory protein, Fis family VP_RS02455 PF00072 Response regulator receiver domain VP_RS02455 PF00158 Sigma-54 interaction domain VP_RS02465 PF00248 Aldo/keto reductase family VP_RS02475 PF02976 DNA mismatch repair enzyme MutH VP_RS02480 PF00293 NUDIX domain VP_RS02485 PF01590 GAF domain VP_RS02485 PF00391 PEP-utilising enzyme, mobile domain VP_RS02485 PF02896 PEP-utilising enzyme, TIM barrel domain VP_RS02485 PF05524 PEP-utilising enzyme, N-terminal VP_RS02490 PF01925 Sulfite exporter TauE/SafE VP_RS02495 PF01790 Prolipoprotein diacylglyceryl transferase VP_RS02500 PF00303 Thymidylate synthase VP_RS02510 PF02690 Na+/Pi-cotransporter VP_RS02515 PF03466 LysR substrate binding domain VP_RS02515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS02520 PF01022 Bacterial regulatory protein, arsR family VP_RS02525 PF01649 Ribosomal protein S20 VP_RS02530 PF03023 Lipid II flippase MurJ VP_RS02535 PF01687 Riboflavin kinase VP_RS02535 PF06574 FAD synthetase VP_RS02540 PF08264 Anticodon-binding domain of tRNA VP_RS02540 PF00133 tRNA synthetases class I (I, L, M and V) VP_RS02540 PF06827 Zinc finger found in FPG and IleRS VP_RS02545 PF01252 Signal peptidase (SPase) II VP_RS02550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VP_RS02555 PF02401 LytB protein VP_RS02560 PF04397 LytTr DNA-binding domain VP_RS02560 PF00072 Response regulator receiver domain VP_RS02565 PF06580 Histidine kinase VP_RS02565 PF07694 5TMR of 5TMR-LYT VP_RS02570 PF02554 Carbon starvation protein CstA VP_RS02585 PF13580 SIS domain VP_RS02590 PF03702 Anhydro-N-acetylmuramic acid kinase VP_RS02595 PF00933 Glycosyl hydrolase family 3 N terminal domain VP_RS02600 PF00793 DAHP synthetase I family VP_RS02605 PF02153 Prephenate dehydrogenase VP_RS02605 PF01817 Chorismate mutase type II VP_RS02610 PF01551 Peptidase family M23 VP_RS02610 PF04225 Opacity-associated protein A LysM-like domain VP_RS02615 PF07238 PilZ domain VP_RS02620 PF00005 ABC transporter VP_RS02620 PF12848 ABC transporter VP_RS02625 PF14718 Soluble lytic murein transglycosylase L domain VP_RS02625 PF01464 Transglycosylase SLT domain VP_RS02630 PF01371 Trp repressor protein VP_RS02635 PF01931 Protein of unknown function DUF84 VP_RS02640 PF00800 Prephenate dehydratase VP_RS02640 PF01817 Chorismate mutase type II VP_RS02645 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VP_RS02650 PF01464 Transglycosylase SLT domain VP_RS02650 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP_RS02655 PF13525 Outer membrane lipoprotein VP_RS02660 PF01479 S4 domain VP_RS02660 PF00849 RNA pseudouridylate synthase VP_RS02670 PF07724 AAA domain (Cdc48 subfamily) VP_RS02670 PF00004 ATPase family associated with various cellular activities (AAA) VP_RS02670 PF17871 AAA lid domain VP_RS02670 PF02861 Clp amino terminal domain, pathogenicity island component VP_RS02670 PF10431 C-terminal, D2-small domain, of ClpB protein VP_RS02715 PF03411 Penicillin-insensitive murein endopeptidase VP_RS02725 PF00037 4Fe-4S binding domain VP_RS02735 PF04381 Putative exonuclease, RdgC VP_RS02740 PF00072 Response regulator receiver domain VP_RS02740 PF00486 Transcriptional regulatory protein, C terminal VP_RS02745 PF00989 PAS fold VP_RS02745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS02745 PF00512 His Kinase A (phospho-acceptor) domain VP_RS02745 PF11808 Phosphate regulon sensor protein PhoR VP_RS02750 PF12849 PBP superfamily domain VP_RS02755 PF02541 Ppx/GppA phosphatase family VP_RS02760 PF13089 Polyphosphate kinase N-terminal domain VP_RS02760 PF17941 Polyphosphate kinase C-terminal domain 1 VP_RS02760 PF13090 Polyphosphate kinase C-terminal domain 2 VP_RS02760 PF02503 Polyphosphate kinase middle domain VP_RS02765 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS02770 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS02775 PF00005 ABC transporter VP_RS02780 PF01895 PhoU domain VP_RS02785 PF03976 Polyphosphate kinase 2 (PPK2) VP_RS02790 PF03932 CutC family VP_RS02795 PF10417 C-terminal domain of 1-Cys peroxiredoxin VP_RS02795 PF00578 AhpC/TSA family VP_RS02800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS02800 PF03466 LysR substrate binding domain VP_RS02805 PF01274 Malate synthase VP_RS02810 PF00463 Isocitrate lyase family VP_RS02815 PF00571 CBS domain VP_RS02825 PF02547 Queuosine biosynthesis protein VP_RS02830 PF01702 Queuine tRNA-ribosyltransferase VP_RS02835 PF02699 Preprotein translocase subunit VP_RS02840 PF02355 Protein export membrane protein VP_RS02840 PF07549 SecD/SecF GG Motif VP_RS02840 PF13721 SecD export protein N-terminal TM region VP_RS02845 PF07549 SecD/SecF GG Motif VP_RS02845 PF02355 Protein export membrane protein VP_RS02850 PF00459 Inositol monophosphatase family VP_RS02855 PF00588 SpoU rRNA Methylase family VP_RS02860 PF02082 Transcriptional regulator VP_RS02865 PF00266 Aminotransferase class-V VP_RS02870 PF01592 NifU-like N terminal domain VP_RS02875 PF01521 Iron-sulphur cluster biosynthesis VP_RS02880 PF07743 HSCB C-terminal oligomerisation domain VP_RS02880 PF00226 DnaJ domain VP_RS02885 PF00012 Hsp70 protein VP_RS02890 PF00111 2Fe-2S iron-sulfur cluster binding domain VP_RS02895 PF04384 Iron-sulphur cluster assembly VP_RS02900 PF00883 Cytosol aminopeptidase family, catalytic domain VP_RS02900 PF12404 Peptidase VP_RS02905 PF00334 Nucleoside diphosphate kinase VP_RS02910 PF04055 Radical SAM superfamily VP_RS02915 PF13464 Domain of unknown function (DUF4115) VP_RS02920 PF04551 GcpE protein VP_RS02925 PF03129 Anticodon binding domain VP_RS02925 PF13393 Histidyl-tRNA synthetase VP_RS02930 PF09976 Tetratricopeptide repeat-like domain VP_RS02935 PF13360 PQQ-like domain VP_RS02940 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VP_RS02940 PF01926 50S ribosome-binding GTPase VP_RS02955 PF02601 Exonuclease VII, large subunit VP_RS02955 PF13742 OB-fold nucleic acid binding domain VP_RS02960 PF00478 IMP dehydrogenase / GMP reductase domain VP_RS02960 PF00571 CBS domain VP_RS02965 PF00117 Glutamine amidotransferase class-I VP_RS02965 PF00958 GMP synthase C terminal domain VP_RS02965 PF02540 NAD synthase VP_RS02970 PF03553 Na+/H+ antiporter family VP_RS02975 PF06483 Chitinase C VP_RS02975 PF00704 Glycosyl hydrolases family 18 VP_RS02980 PF01184 GPR1/FUN34/yaaH family VP_RS02990 PF01235 Sodium:alanine symporter family VP_RS02995 PF01266 FAD dependent oxidoreductase VP_RS03015 PF07969 Amidohydrolase family VP_RS03020 PF01053 Cys/Met metabolism PLP-dependent enzyme VP_RS03025 PF00202 Aminotransferase class-III VP_RS03045 PF00795 Carbon-nitrogen hydrolase VP_RS03045 PF00583 Acetyltransferase (GNAT) family VP_RS03050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS03050 PF03466 LysR substrate binding domain VP_RS03065 PF00239 Resolvase, N terminal domain VP_RS03065 PF02796 Helix-turn-helix domain of resolvase VP_RS03080 PF00075 RNase H VP_RS03095 PF01668 SmpB protein VP_RS03100 PF03364 Polyketide cyclase / dehydrase and lipid transport VP_RS03105 PF03658 RnfH family Ubiquitin VP_RS03110 PF04355 SmpA / OmlA family VP_RS03115 PF02463 RecF/RecN/SMC N terminal domain VP_RS03125 PF01513 ATP-NAD kinase VP_RS03130 PF01025 GrpE VP_RS03135 PF00375 Sodium:dicarboxylate symporter family VP_RS03140 PF00012 Hsp70 protein VP_RS03145 PF00684 DnaJ central domain VP_RS03145 PF01556 DnaJ C terminal domain VP_RS03145 PF00226 DnaJ domain VP_RS03150 PF07963 Prokaryotic N-terminal methylation motif VP_RS03150 PF00114 Pilin (bacterial filament) VP_RS03155 PF00114 Pilin (bacterial filament) VP_RS03155 PF07963 Prokaryotic N-terminal methylation motif VP_RS03175 PF03806 AbgT putative transporter family VP_RS03180 PF14437 MafB19-like deaminase VP_RS03185 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP_RS03185 PF01464 Transglycosylase SLT domain VP_RS03190 PF02769 AIR synthase related protein, C-terminal domain VP_RS03190 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VP_RS03190 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VP_RS03215 PF07687 Peptidase dimerisation domain VP_RS03215 PF01546 Peptidase family M20/M25/M40 VP_RS03220 PF00860 Permease family VP_RS03225 PF00156 Phosphoribosyl transferase domain VP_RS03235 PF07417 Sigma factor-binding transcriptional regulator Crl VP_RS03240 PF01472 PUA domain VP_RS03240 PF00696 Amino acid kinase family VP_RS03245 PF00171 Aldehyde dehydrogenase family VP_RS03250 PF03477 ATP cone domain VP_RS03255 PF01872 RibD C-terminal domain VP_RS03255 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VP_RS03260 PF00677 Lumazine binding domain VP_RS03265 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VP_RS03265 PF00925 GTP cyclohydrolase II VP_RS03270 PF00885 6,7-dimethyl-8-ribityllumazine synthase VP_RS03275 PF01029 NusB family VP_RS03280 PF00586 AIR synthase related protein, N-terminal domain VP_RS03280 PF02769 AIR synthase related protein, C-terminal domain VP_RS03285 PF04608 Phosphatidylglycerophosphatase A VP_RS03290 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VP_RS03290 PF02779 Transketolase, pyrimidine binding domain VP_RS03290 PF02780 Transketolase, C-terminal domain VP_RS03295 PF00348 Polyprenyl synthetase VP_RS03300 PF02609 Exonuclease VII small subunit VP_RS03305 PF01618 MotA/TolQ/ExbB proton channel family VP_RS03310 PF00691 OmpA family VP_RS03315 PF02926 THUMP domain VP_RS03315 PF02568 Thiamine biosynthesis protein (ThiI) VP_RS03320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS03320 PF03466 LysR substrate binding domain VP_RS03330 PF04241 Protein of unknown function (DUF423) VP_RS03335 PF01728 FtsJ-like methyltransferase VP_RS03335 PF18125 RlmM ferredoxin-like domain VP_RS03340 PF01223 DNA/RNA non-specific endonuclease VP_RS03345 PF01367 5'-3' exonuclease, C-terminal SAM fold VP_RS03345 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VP_RS03350 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VP_RS03350 PF03641 Possible lysine decarboxylase VP_RS03350 PF11892 Domain of unknown function (DUF3412) VP_RS03355 PF00990 Diguanylate cyclase, GGDEF domain VP_RS03355 PF00072 Response regulator receiver domain VP_RS03365 PF14489 QueF-like protein VP_RS03365 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VP_RS03370 PF07348 Syd protein (SUKH-2) VP_RS03375 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VP_RS03380 PF03180 NLPA lipoprotein VP_RS03385 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS03390 PF09383 NIL domain VP_RS03390 PF00005 ABC transporter VP_RS03400 PF00356 Bacterial regulatory proteins, lacI family VP_RS03405 PF00367 phosphotransferase system, EIIB VP_RS03405 PF02378 Phosphotransferase system, EIIC VP_RS03410 PF00128 Alpha amylase, catalytic domain VP_RS03410 PF16657 Maltogenic Amylase, C-terminal domain VP_RS03425 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) VP_RS03425 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VP_RS03430 PF00464 Serine hydroxymethyltransferase VP_RS03435 PF04055 Radical SAM superfamily VP_RS03435 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VP_RS03440 PF03099 Biotin/lipoate A/B protein ligase family VP_RS03445 PF04359 Protein of unknown function (DUF493) VP_RS03450 PF00768 D-alanyl-D-alanine carboxypeptidase VP_RS03450 PF07943 Penicillin-binding protein 5, C-terminal domain VP_RS03455 PF03330 Lytic transglycolase VP_RS03455 PF05036 Sporulation related domain VP_RS03460 PF01098 Cell cycle protein VP_RS03465 PF03717 Penicillin-binding Protein dimerisation domain VP_RS03465 PF00905 Penicillin binding protein transpeptidase domain VP_RS03470 PF02590 Predicted SPOUT methyltransferase VP_RS03480 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VP_RS03480 PF06144 DNA polymerase III, delta subunit VP_RS03485 PF04390 Lipopolysaccharide-assembly VP_RS03490 PF08264 Anticodon-binding domain of tRNA VP_RS03490 PF00133 tRNA synthetases class I (I, L, M and V) VP_RS03490 PF13603 Leucyl-tRNA synthetase, Domain 2 VP_RS03495 PF07295 Zinc-ribbon containing domain VP_RS03500 PF00795 Carbon-nitrogen hydrolase VP_RS03505 PF03471 Transporter associated domain VP_RS03505 PF00571 CBS domain VP_RS03510 PF02130 Uncharacterized protein family UPF0054 VP_RS03515 PF02562 PhoH-like protein VP_RS03520 PF00919 Uncharacterized protein family UPF0004 VP_RS03520 PF01938 TRAM domain VP_RS03520 PF04055 Radical SAM superfamily VP_RS03525 PF01494 FAD binding domain VP_RS03640 PF06071 Protein of unknown function (DUF933) VP_RS03640 PF01926 50S ribosome-binding GTPase VP_RS03645 PF01195 Peptidyl-tRNA hydrolase VP_RS03650 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VP_RS03650 PF14572 Phosphoribosyl synthetase-associated domain VP_RS03655 PF08544 GHMP kinases C terminal VP_RS03655 PF00288 GHMP kinases N terminal domain VP_RS03660 PF03550 Outer membrane lipoprotein LolB VP_RS03665 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VP_RS03665 PF01488 Shikimate / quinate 5-dehydrogenase VP_RS03665 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VP_RS03670 PF00472 RF-1 domain VP_RS03670 PF03462 PCRF domain VP_RS03675 PF13847 Methyltransferase domain VP_RS03675 PF17827 PrmC N-terminal domain VP_RS03680 PF04247 Invasion gene expression up-regulator, SirB VP_RS03685 PF13369 Transglutaminase-like superfamily VP_RS03690 PF00793 DAHP synthetase I family VP_RS03695 PF00149 Calcineurin-like phosphoesterase VP_RS03695 PF02872 5'-nucleotidase, C-terminal domain VP_RS03700 PF04073 Aminoacyl-tRNA editing domain VP_RS03705 PF01479 S4 domain VP_RS03705 PF00849 RNA pseudouridylate synthase VP_RS03710 PF01713 Smr domain VP_RS03730 PF02838 Glycosyl hydrolase family 20, domain 2 VP_RS03730 PF03173 Putative carbohydrate binding domain VP_RS03730 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VP_RS03730 PF00728 Glycosyl hydrolase family 20, catalytic domain VP_RS03745 PF00403 Heavy-metal-associated domain VP_RS03750 PF13609 Gram-negative porin VP_RS03755 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VP_RS03760 PF00749 tRNA synthetases class I (E and Q), catalytic domain VP_RS03765 PF00691 OmpA family VP_RS03765 PF01389 OmpA-like transmembrane domain VP_RS03810 PF01584 CheW-like domain VP_RS03810 PF00072 Response regulator receiver domain VP_RS03815 PF03705 CheR methyltransferase, all-alpha domain VP_RS03815 PF01739 CheR methyltransferase, SAM binding domain VP_RS03820 PF00460 Flagella basal body rod protein VP_RS03825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP_RS03825 PF00460 Flagella basal body rod protein VP_RS03830 PF13861 FlgD Tudor-like domain VP_RS03830 PF13860 FlgD Ig-like domain VP_RS03830 PF03963 Flagellar hook capping protein - N-terminal region VP_RS03835 PF07559 Flagellar basal body protein FlaE VP_RS03835 PF00460 Flagella basal body rod protein VP_RS03835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP_RS03840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP_RS03840 PF00460 Flagella basal body rod protein VP_RS03845 PF00460 Flagella basal body rod protein VP_RS03845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP_RS03850 PF02107 Flagellar L-ring protein VP_RS03855 PF02119 Flagellar P-ring protein VP_RS03860 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VP_RS03860 PF10135 Rod binding protein VP_RS03865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP_RS03865 PF07196 Flagellin hook IN motif VP_RS03870 PF00669 Bacterial flagellin N-terminal helical region VP_RS03875 PF00700 Bacterial flagellin C-terminal helical region VP_RS03875 PF07196 Flagellin hook IN motif VP_RS03875 PF00669 Bacterial flagellin N-terminal helical region VP_RS03880 PF07196 Flagellin hook IN motif VP_RS03880 PF00700 Bacterial flagellin C-terminal helical region VP_RS03880 PF00669 Bacterial flagellin N-terminal helical region VP_RS03885 PF00700 Bacterial flagellin C-terminal helical region VP_RS03885 PF07196 Flagellin hook IN motif VP_RS03885 PF00669 Bacterial flagellin N-terminal helical region VP_RS03890 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VP_RS03895 PF00391 PEP-utilising enzyme, mobile domain VP_RS03895 PF02896 PEP-utilising enzyme, TIM barrel domain VP_RS03895 PF05524 PEP-utilising enzyme, N-terminal VP_RS03900 PF00381 PTS HPr component phosphorylation site VP_RS03905 PF00291 Pyridoxal-phosphate dependent enzyme VP_RS03915 PF04354 ZipA, C-terminal FtsZ-binding domain VP_RS03920 PF03120 NAD-dependent DNA ligase OB-fold domain VP_RS03920 PF12826 Helix-hairpin-helix motif VP_RS03920 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VP_RS03920 PF00533 BRCA1 C Terminus (BRCT) domain VP_RS03920 PF01653 NAD-dependent DNA ligase adenylation domain VP_RS03925 PF03573 outer membrane porin, OprD family VP_RS03940 PF01145 SPFH domain / Band 7 family VP_RS03940 PF16200 C-terminal region of band_7 VP_RS03945 PF00085 Thioredoxin VP_RS03950 PF00106 short chain dehydrogenase VP_RS03955 PF01370 NAD dependent epimerase/dehydratase family VP_RS03955 PF08338 Domain of unknown function (DUF1731) VP_RS03960 PF07556 Protein of unknown function (DUF1538) VP_RS03965 PF07556 Protein of unknown function (DUF1538) VP_RS03980 PF12850 Calcineurin-like phosphoesterase superfamily domain VP_RS03995 PF17323 Trans-membrane regulatory protein ToxS VP_RS04000 PF00486 Transcriptional regulatory protein, C terminal VP_RS04005 PF00183 Hsp90 protein VP_RS04005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS04010 PF05191 Adenylate kinase, active site lid VP_RS04015 PF00762 Ferrochelatase VP_RS04020 PF00854 POT family VP_RS04025 PF02357 Transcription termination factor nusG VP_RS04030 PF00733 Asparagine synthase VP_RS04030 PF13537 Glutamine amidotransferase domain VP_RS04035 PF02254 TrkA-N domain VP_RS04035 PF00999 Sodium/hydrogen exchanger family VP_RS04040 PF01047 MarR family VP_RS04040 PF00480 ROK family VP_RS04045 PF01979 Amidohydrolase family VP_RS04050 PF00367 phosphotransferase system, EIIB VP_RS04050 PF02378 Phosphotransferase system, EIIC VP_RS04055 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VP_RS04055 PF00749 tRNA synthetases class I (E and Q), catalytic domain VP_RS04060 PF01475 Ferric uptake regulator family VP_RS04070 PF00258 Flavodoxin VP_RS04080 PF00561 alpha/beta hydrolase fold VP_RS04085 PF17206 SeqA protein N-terminal domain VP_RS04085 PF03925 SeqA protein C-terminal domain VP_RS04090 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VP_RS04090 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VP_RS04090 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VP_RS04090 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VP_RS04100 PF01784 NIF3 (NGG1p interacting factor 3) VP_RS04105 PF00285 Citrate synthase, C-terminal domain VP_RS04110 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VP_RS04115 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VP_RS04120 PF00890 FAD binding domain VP_RS04120 PF02910 Fumarate reductase flavoprotein C-term VP_RS04125 PF13085 2Fe-2S iron-sulfur cluster binding domain VP_RS04130 PF02779 Transketolase, pyrimidine binding domain VP_RS04130 PF16078 2-oxoglutarate dehydrogenase N-terminus VP_RS04130 PF00676 Dehydrogenase E1 component VP_RS04130 PF16870 2-oxoglutarate dehydrogenase C-terminal VP_RS04135 PF02817 e3 binding domain VP_RS04135 PF00364 Biotin-requiring enzyme VP_RS04135 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VP_RS04140 PF08442 ATP-grasp domain VP_RS04140 PF00549 CoA-ligase VP_RS04145 PF02629 CoA binding domain VP_RS04145 PF00549 CoA-ligase VP_RS04150 PF00950 ABC 3 transport family VP_RS04155 PF00005 ABC transporter VP_RS04160 PF01297 Zinc-uptake complex component A periplasmic VP_RS04165 PF12833 Helix-turn-helix domain VP_RS04165 PF02311 AraC-like ligand binding domain VP_RS04170 PF04023 FeoA domain VP_RS04175 PF07664 Ferrous iron transport protein B C terminus VP_RS04175 PF07670 Nucleoside recognition VP_RS04175 PF02421 Ferrous iron transport protein B VP_RS04175 PF17910 FeoB cytosolic helical domain VP_RS04190 PF03485 Arginyl tRNA synthetase N terminal domain VP_RS04190 PF05746 DALR anticodon binding domain VP_RS04190 PF00750 tRNA synthetases class I (R) VP_RS04195 PF06185 YecM protein VP_RS04200 PF00551 Formyl transferase VP_RS04200 PF01842 ACT domain VP_RS04205 PF13307 Helicase C-terminal domain VP_RS04205 PF04851 Type III restriction enzyme, res subunit VP_RS04210 PF00814 Glycoprotease family VP_RS04225 PF00561 alpha/beta hydrolase fold VP_RS04230 PF00501 AMP-binding enzyme VP_RS04230 PF13193 AMP-binding enzyme C-terminal domain VP_RS04235 PF01612 3'-5' exonuclease VP_RS04235 PF00570 HRDC domain VP_RS04240 PF03776 Septum formation topological specificity factor MinE VP_RS04245 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VP_RS04250 PF05209 Septum formation inhibitor MinC, N-terminal domain VP_RS04250 PF03775 Septum formation inhibitor MinC, C-terminal domain VP_RS04255 PF05166 YcgL domain VP_RS04260 PF13406 Transglycosylase SLT domain VP_RS04265 PF03466 LysR substrate binding domain VP_RS04265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS04270 PF07662 Na+ dependent nucleoside transporter C-terminus VP_RS04270 PF07670 Nucleoside recognition VP_RS04270 PF01773 Na+ dependent nucleoside transporter N-terminus VP_RS04275 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VP_RS04275 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VP_RS04290 PF00109 Beta-ketoacyl synthase, N-terminal domain VP_RS04290 PF02801 Beta-ketoacyl synthase, C-terminal domain VP_RS04300 PF07977 FabA-like domain VP_RS04305 PF00109 Beta-ketoacyl synthase, N-terminal domain VP_RS04305 PF02801 Beta-ketoacyl synthase, C-terminal domain VP_RS04330 PF00221 Aromatic amino acid lyase VP_RS04335 PF00535 Glycosyl transferase family 2 VP_RS04340 PF07977 FabA-like domain VP_RS04355 PF00550 Phosphopantetheine attachment site VP_RS04360 PF00550 Phosphopantetheine attachment site VP_RS04385 PF04820 Tryptophan halogenase VP_RS04395 PF01595 Cyclin M transmembrane N-terminal domain VP_RS04395 PF03471 Transporter associated domain VP_RS04395 PF00571 CBS domain VP_RS04400 PF00271 Helicase conserved C-terminal domain VP_RS04400 PF00270 DEAD/DEAH box helicase VP_RS04405 PF02080 TrkA-C domain VP_RS04405 PF02254 TrkA-N domain VP_RS04410 PF02386 Cation transport protein VP_RS04425 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VP_RS04430 PF03480 Bacterial extracellular solute-binding protein, family 7 VP_RS04435 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VP_RS04440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VP_RS04450 PF02954 Bacterial regulatory protein, Fis family VP_RS04450 PF00158 Sigma-54 interaction domain VP_RS04450 PF00072 Response regulator receiver domain VP_RS04455 PF00512 His Kinase A (phospho-acceptor) domain VP_RS04455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS04455 PF02743 Cache domain VP_RS04465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VP_RS04465 PF05698 Bacterial trigger factor protein (TF) C-terminus VP_RS04465 PF05697 Bacterial trigger factor protein (TF) VP_RS04470 PF00574 Clp protease VP_RS04475 PF10431 C-terminal, D2-small domain, of ClpB protein VP_RS04475 PF07724 AAA domain (Cdc48 subfamily) VP_RS04475 PF06689 ClpX C4-type zinc finger VP_RS04480 PF00004 ATPase family associated with various cellular activities (AAA) VP_RS04480 PF05362 Lon protease (S16) C-terminal proteolytic domain VP_RS04480 PF02190 ATP-dependent protease La (LON) substrate-binding domain VP_RS04485 PF00216 Bacterial DNA-binding protein VP_RS04490 PF13145 PPIC-type PPIASE domain VP_RS04510 PF01966 HD domain VP_RS04510 PF13286 Phosphohydrolase-associated domain VP_RS04520 PF00155 Aminotransferase class I and II VP_RS04525 PF00425 chorismate binding enzyme VP_RS04530 PF16582 Middle domain of thiamine pyrophosphate VP_RS04530 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VP_RS04530 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VP_RS04535 PF12697 Alpha/beta hydrolase family VP_RS04540 PF00378 Enoyl-CoA hydratase/isomerase VP_RS04545 PF13378 Enolase C-terminal domain-like VP_RS04550 PF00501 AMP-binding enzyme VP_RS04550 PF13193 AMP-binding enzyme C-terminal domain VP_RS04560 PF03601 Conserved hypothetical protein 698 VP_RS04565 PF07690 Major Facilitator Superfamily VP_RS04610 PF13533 Biotin-lipoyl like VP_RS04615 PF00873 AcrB/AcrD/AcrF family VP_RS04635 PF00291 Pyridoxal-phosphate dependent enzyme VP_RS04640 PF13404 AsnC-type helix-turn-helix domain VP_RS04640 PF01037 Lrp/AsnC ligand binding domain VP_RS04655 PF09619 Type III secretion system lipoprotein chaperone (YscW) VP_RS04660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VP_RS04670 PF00990 Diguanylate cyclase, GGDEF domain VP_RS04670 PF17152 Periplasmic sensor domain VP_RS04680 PF08032 RNA 2'-O ribose methyltransferase substrate binding VP_RS04680 PF00588 SpoU rRNA Methylase family VP_RS04685 PF11953 Domain of unknown function (DUF3470) VP_RS04685 PF00037 4Fe-4S binding domain VP_RS04695 PF00571 CBS domain VP_RS04695 PF00478 IMP dehydrogenase / GMP reductase domain VP_RS04700 PF00403 Heavy-metal-associated domain VP_RS04705 PF01048 Phosphorylase superfamily VP_RS04715 PF00672 HAMP domain VP_RS04715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS04720 PF01230 HIT domain VP_RS04735 PF13036 Peptidoglycan-synthase activator LpoB VP_RS04735 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VP_RS04745 PF05728 Uncharacterised protein family (UPF0227) VP_RS04750 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS04765 PF00271 Helicase conserved C-terminal domain VP_RS04765 PF03461 TRCF domain VP_RS04765 PF00270 DEAD/DEAH box helicase VP_RS04765 PF02559 CarD-like/TRCF domain VP_RS04765 PF17757 UvrB interaction domain VP_RS04775 PF02687 FtsX-like permease family VP_RS04775 PF12704 MacB-like periplasmic core domain VP_RS04780 PF00005 ABC transporter VP_RS04785 PF12704 MacB-like periplasmic core domain VP_RS04785 PF02687 FtsX-like permease family VP_RS04795 PF13567 Domain of unknown function (DUF4131) VP_RS04795 PF03772 Competence protein VP_RS04795 PF00753 Metallo-beta-lactamase superfamily VP_RS04800 PF00664 ABC transporter transmembrane region VP_RS04800 PF00005 ABC transporter VP_RS04805 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VP_RS04810 PF03966 Trm112p-like protein VP_RS04815 PF02348 Cytidylyltransferase VP_RS04820 PF04293 SpoVR like protein VP_RS04825 PF04285 Protein of unknown function (DUF444) VP_RS04830 PF06798 PrkA serine protein kinase C-terminal domain VP_RS04830 PF08298 PrkA AAA domain VP_RS04835 PF03887 YfbU domain VP_RS04845 PF04055 Radical SAM superfamily VP_RS04855 PF02901 Pyruvate formate lyase-like VP_RS04855 PF01228 Glycine radical VP_RS04870 PF00005 ABC transporter VP_RS04875 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP_RS04880 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS04885 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS04895 PF03372 Endonuclease/Exonuclease/phosphatase family VP_RS04900 PF10689 Protein of unknown function (DUF2496) VP_RS04905 PF07445 Primosomal replication protein priC VP_RS04910 PF01925 Sulfite exporter TauE/SafE VP_RS04915 PF13307 Helicase C-terminal domain VP_RS04915 PF06733 DEAD_2 VP_RS04925 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VP_RS04930 PF00849 RNA pseudouridylate synthase VP_RS04935 PF03971 Monomeric isocitrate dehydrogenase VP_RS04940 PF00313 'Cold-shock' DNA-binding domain VP_RS04945 PF02617 ATP-dependent Clp protease adaptor protein ClpS VP_RS04950 PF10431 C-terminal, D2-small domain, of ClpB protein VP_RS04950 PF02861 Clp amino terminal domain, pathogenicity island component VP_RS04950 PF07724 AAA domain (Cdc48 subfamily) VP_RS04950 PF17871 AAA lid domain VP_RS04950 PF00004 ATPase family associated with various cellular activities (AAA) VP_RS04960 PF01176 Translation initiation factor 1A / IF-1 VP_RS04965 PF04377 Arginine-tRNA-protein transferase, C terminus VP_RS04965 PF04376 Arginine-tRNA-protein transferase, N terminus VP_RS04970 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VP_RS04980 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VP_RS04985 PF10692 Protein of unknown function (DUF2498) VP_RS04990 PF01396 Topoisomerase DNA binding C4 zinc finger VP_RS04990 PF01751 Toprim domain VP_RS04990 PF01131 DNA topoisomerase VP_RS04990 PF08272 Topoisomerase I zinc-ribbon-like VP_RS04995 PF00483 Nucleotidyl transferase VP_RS05000 PF08323 Starch synthase catalytic domain VP_RS05000 PF00534 Glycosyl transferases group 1 VP_RS05020 PF04993 TfoX N-terminal domain VP_RS05020 PF04994 TfoX C-terminal domain VP_RS05025 PF00356 Bacterial regulatory proteins, lacI family VP_RS05030 PF02613 Nitrate reductase delta subunit VP_RS05035 PF00486 Transcriptional regulatory protein, C terminal VP_RS05035 PF00072 Response regulator receiver domain VP_RS05040 PF02698 DUF218 domain VP_RS05045 PF13847 Methyltransferase domain VP_RS05050 PF17192 MukF middle domain VP_RS05050 PF03882 MukF winged-helix domain VP_RS05050 PF17193 MukF C-terminal domain VP_RS05055 PF04288 MukE-like family VP_RS05060 PF04310 MukB N-terminal VP_RS05060 PF16330 MukB hinge domain VP_RS05065 PF08443 RimK-like ATP-grasp domain VP_RS05065 PF18030 RimK PreATP-grasp domain VP_RS05075 PF08443 RimK-like ATP-grasp domain VP_RS05075 PF18030 RimK PreATP-grasp domain VP_RS05080 PF08003 Protein of unknown function (DUF1698) VP_RS05085 PF13649 Methyltransferase domain VP_RS05090 PF01904 Protein of unknown function DUF72 VP_RS05095 PF01336 OB-fold nucleic acid binding domain VP_RS05095 PF00152 tRNA synthetases class II (D, K and N) VP_RS05095 PF02938 GAD domain VP_RS05100 PF02075 Crossover junction endodeoxyribonuclease RuvC VP_RS05110 PF01330 RuvA N terminal domain VP_RS05110 PF07499 RuvA, C-terminal domain VP_RS05115 PF05496 Holliday junction DNA helicase RuvB P-loop domain VP_RS05115 PF17864 RuvB AAA lid domain VP_RS05115 PF05491 RuvB C-terminal winged helix domain VP_RS05120 PF01654 Cytochrome bd terminal oxidase subunit I VP_RS05125 PF02322 Cytochrome bd terminal oxidase subunit II VP_RS05130 PF08173 Membrane bound YbgT-like protein VP_RS05140 PF03061 Thioesterase superfamily VP_RS05145 PF01618 MotA/TolQ/ExbB proton channel family VP_RS05150 PF02472 Biopolymer transport protein ExbD/TolR VP_RS05160 PF07676 WD40-like Beta Propeller Repeat VP_RS05160 PF04052 TolB amino-terminal domain VP_RS05165 PF00691 OmpA family VP_RS05170 PF16331 TolA binding protein trimerisation VP_RS05170 PF13174 Tetratricopeptide repeat VP_RS05175 PF02445 Quinolinate synthetase A protein VP_RS05185 PF03994 Domain of Unknown Function (DUF350) VP_RS05195 PF03738 Glutathionylspermidine synthase preATP-grasp VP_RS05205 PF09308 LuxQ, periplasmic VP_RS05205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS05205 PF00072 Response regulator receiver domain VP_RS05205 PF00512 His Kinase A (phospho-acceptor) domain VP_RS05210 PF06610 L-alanine exporter VP_RS05250 PF00589 Phage integrase family VP_RS05250 PF13356 Arm DNA-binding domain VP_RS05285 PF00580 UvrD/REP helicase N-terminal domain VP_RS05285 PF13361 UvrD-like helicase C-terminal domain VP_RS05295 PF00899 ThiF family VP_RS05310 PF02743 Cache domain VP_RS05310 PF00672 HAMP domain VP_RS05310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS05315 PF00529 HlyD membrane-fusion protein of T1SS VP_RS05315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS05320 PF00873 AcrB/AcrD/AcrF family VP_RS05335 PF00579 tRNA synthetases class I (W and Y) VP_RS05345 PF03372 Endonuclease/Exonuclease/phosphatase family VP_RS05350 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VP_RS05360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS05360 PF03466 LysR substrate binding domain VP_RS05370 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VP_RS05370 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VP_RS05375 PF01037 Lrp/AsnC ligand binding domain VP_RS05380 PF01580 FtsK/SpoIIIE family VP_RS05380 PF09397 Ftsk gamma domain VP_RS05380 PF17854 FtsK alpha domain VP_RS05380 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VP_RS05385 PF03548 Outer membrane lipoprotein carrier protein LolA VP_RS05390 PF16193 AAA C-terminal domain VP_RS05390 PF00004 ATPase family associated with various cellular activities (AAA) VP_RS05390 PF12002 MgsA AAA+ ATPase C terminal VP_RS05395 PF02403 Seryl-tRNA synthetase N-terminal domain VP_RS05395 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VP_RS05410 PF01258 Prokaryotic dksA/traR C4-type zinc finger VP_RS05415 PF00202 Aminotransferase class-III VP_RS05420 PF04055 Radical SAM superfamily VP_RS05420 PF06968 Biotin and Thiamin Synthesis associated domain VP_RS05425 PF00155 Aminotransferase class I and II VP_RS05430 PF08241 Methyltransferase domain VP_RS05440 PF01435 Peptidase family M48 VP_RS05450 PF00106 short chain dehydrogenase VP_RS05485 PF00206 Lyase VP_RS05485 PF08328 Adenylosuccinate lyase C-terminal VP_RS05490 PF04356 Protein of unknown function (DUF489) VP_RS05505 PF00294 pfkB family carbohydrate kinase VP_RS05510 PF00816 H-NS histone family VP_RS05515 PF03553 Na+/H+ antiporter family VP_RS05525 PF00158 Sigma-54 interaction domain VP_RS05525 PF02954 Bacterial regulatory protein, Fis family VP_RS05525 PF00072 Response regulator receiver domain VP_RS05530 PF08029 HisG, C-terminal domain VP_RS05530 PF01634 ATP phosphoribosyltransferase VP_RS05535 PF00815 Histidinol dehydrogenase VP_RS05540 PF00155 Aminotransferase class I and II VP_RS05545 PF08645 Polynucleotide kinase 3 phosphatase VP_RS05545 PF00475 Imidazoleglycerol-phosphate dehydratase VP_RS05550 PF00117 Glutamine amidotransferase class-I VP_RS05555 PF00977 Histidine biosynthesis protein VP_RS05560 PF00977 Histidine biosynthesis protein VP_RS05565 PF01502 Phosphoribosyl-AMP cyclohydrolase VP_RS05565 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VP_RS05570 PF02810 SEC-C motif VP_RS05575 PF08668 HDOD domain VP_RS05575 PF00563 EAL domain VP_RS05580 PF00149 Calcineurin-like phosphoesterase VP_RS05585 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VP_RS05590 PF01406 tRNA synthetases class I (C) catalytic domain VP_RS05590 PF09190 DALR domain VP_RS05595 PF00265 Thymidine kinase VP_RS05600 PF02698 DUF218 domain VP_RS05625 PF01226 Formate/nitrite transporter VP_RS05630 PF03649 Uncharacterised protein family (UPF0014) VP_RS05635 PF06796 Periplasmic nitrate reductase protein NapE VP_RS05640 PF03264 NapC/NirT cytochrome c family, N-terminal region VP_RS05645 PF00384 Molybdopterin oxidoreductase VP_RS05645 PF18364 Molybdopterin oxidoreductase N-terminal domain VP_RS05645 PF01568 Molydopterin dinucleotide binding domain VP_RS05650 PF16874 Glycosyl hydrolase family 36 C-terminal domain VP_RS05650 PF16875 Glycosyl hydrolase family 36 N-terminal domain VP_RS05660 PF01368 DHH family VP_RS05660 PF02833 DHHA2 domain VP_RS05670 PF00005 ABC transporter VP_RS05675 PF00005 ABC transporter VP_RS05675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP_RS05680 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS05680 PF12911 N-terminal TM domain of oligopeptide transport permease C VP_RS05685 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS05690 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP_RS05695 PF00158 Sigma-54 interaction domain VP_RS05695 PF02954 Bacterial regulatory protein, Fis family VP_RS05700 PF04012 PspA/IM30 family VP_RS05705 PF06667 Phage shock protein B VP_RS05710 PF04024 PspC domain VP_RS05715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS05720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS05725 PF00873 AcrB/AcrD/AcrF family VP_RS05730 PF03352 Methyladenine glycosylase VP_RS05735 PF03280 Proteobacterial lipase chaperone protein VP_RS05740 PF00561 alpha/beta hydrolase fold VP_RS05745 PF01053 Cys/Met metabolism PLP-dependent enzyme VP_RS05750 PF13396 Phospholipase_D-nuclease N-terminal VP_RS05750 PF13091 PLD-like domain VP_RS05755 PF00209 Sodium:neurotransmitter symporter family VP_RS05760 PF12729 Four helix bundle sensory module for signal transduction VP_RS05760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS05760 PF00672 HAMP domain VP_RS05765 PF00849 RNA pseudouridylate synthase VP_RS05775 PF00175 Oxidoreductase NAD-binding domain VP_RS05775 PF00111 2Fe-2S iron-sulfur cluster binding domain VP_RS05775 PF00970 Oxidoreductase FAD-binding domain VP_RS05780 PF03063 Prismane/CO dehydrogenase family VP_RS05785 PF01590 GAF domain VP_RS05785 PF00158 Sigma-54 interaction domain VP_RS05795 PF01066 CDP-alcohol phosphatidyltransferase VP_RS05800 PF00005 ABC transporter VP_RS05805 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS05810 PF13416 Bacterial extracellular solute-binding protein VP_RS05815 PF09335 SNARE associated Golgi protein VP_RS05825 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VP_RS05825 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS05835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS05835 PF00512 His Kinase A (phospho-acceptor) domain VP_RS05840 PF00072 Response regulator receiver domain VP_RS05840 PF00196 Bacterial regulatory proteins, luxR family VP_RS05850 PF06945 Protein of unknown function (DUF1289) VP_RS05860 PF00149 Calcineurin-like phosphoesterase VP_RS05860 PF02872 5'-nucleotidase, C-terminal domain VP_RS05875 PF01386 Ribosomal L25p family VP_RS05880 PF00672 HAMP domain VP_RS05880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS05880 PF00512 His Kinase A (phospho-acceptor) domain VP_RS05885 PF00072 Response regulator receiver domain VP_RS05885 PF00486 Transcriptional regulatory protein, C terminal VP_RS05895 PF00271 Helicase conserved C-terminal domain VP_RS05895 PF04851 Type III restriction enzyme, res subunit VP_RS05900 PF00849 RNA pseudouridylate synthase VP_RS05900 PF01479 S4 domain VP_RS05905 PF07690 Major Facilitator Superfamily VP_RS05920 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) VP_RS05935 PF03264 NapC/NirT cytochrome c family, N-terminal region VP_RS05940 PF11066 Protein of unknown function (DUF2867) VP_RS05940 PF13460 NAD(P)H-binding VP_RS05945 PF01554 MatE VP_RS05950 PF00005 ABC transporter VP_RS05965 PF06965 Na+/H+ antiporter 1 VP_RS05970 PF00440 Bacterial regulatory proteins, tetR family VP_RS05970 PF16295 Tetracyclin repressor-like, C-terminal domain VP_RS05975 PF09317 Domain of unknown function (DUF1974) VP_RS05975 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VP_RS05975 PF02770 Acyl-CoA dehydrogenase, middle domain VP_RS05975 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VP_RS05980 PF12241 Trans-2-enoyl-CoA reductase catalytic region VP_RS05980 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VP_RS05980 PF07055 Enoyl reductase FAD binding domain VP_RS05985 PF06826 Predicted Permease Membrane Region VP_RS05985 PF02080 TrkA-C domain VP_RS05990 PF00462 Glutaredoxin VP_RS05995 PF00465 Iron-containing alcohol dehydrogenase VP_RS06000 PF01380 SIS domain VP_RS06000 PF01418 Helix-turn-helix domain, rpiR family VP_RS06005 PF00282 Pyridoxal-dependent decarboxylase conserved domain VP_RS06015 PF03956 Lysine exporter LysO VP_RS06025 PF04993 TfoX N-terminal domain VP_RS06025 PF04994 TfoX C-terminal domain VP_RS06040 PF00512 His Kinase A (phospho-acceptor) domain VP_RS06040 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP_RS06040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS06050 PF00266 Aminotransferase class-V VP_RS06055 PF00291 Pyridoxal-phosphate dependent enzyme VP_RS06060 PF00005 ABC transporter VP_RS06060 PF00664 ABC transporter transmembrane region VP_RS06065 PF00664 ABC transporter transmembrane region VP_RS06065 PF00005 ABC transporter VP_RS06070 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS06080 PF00266 Aminotransferase class-V VP_RS06090 PF00072 Response regulator receiver domain VP_RS06090 PF00990 Diguanylate cyclase, GGDEF domain VP_RS06095 PF00939 Sodium:sulfate symporter transmembrane region VP_RS06100 PF02698 DUF218 domain VP_RS06105 PF00390 Malic enzyme, N-terminal domain VP_RS06105 PF03949 Malic enzyme, NAD binding domain VP_RS06110 PF04408 Helicase associated domain (HA2) VP_RS06110 PF00270 DEAD/DEAH box helicase VP_RS06110 PF00271 Helicase conserved C-terminal domain VP_RS06110 PF08482 ATP-dependent helicase C-terminal VP_RS06115 PF02253 Phospholipase A1 VP_RS06125 PF16655 PhoD-like phosphatase, N-terminal domain VP_RS06125 PF09423 PhoD-like phosphatase VP_RS06130 PF01259 SAICAR synthetase VP_RS06150 PF00691 OmpA family VP_RS06150 PF05736 OprF membrane domain VP_RS06165 PF13183 4Fe-4S dicluster domain VP_RS06165 PF02913 FAD linked oxidases, C-terminal domain VP_RS06165 PF01565 FAD binding domain VP_RS06170 PF04191 Phospholipid methyltransferase VP_RS06180 PF00221 Aromatic amino acid lyase VP_RS06185 PF17392 Urocanase C-terminal domain VP_RS06185 PF01175 Urocanase Rossmann-like domain VP_RS06185 PF17391 Urocanase N-terminal domain VP_RS06190 PF00491 Arginase family VP_RS06195 PF01979 Amidohydrolase family VP_RS06200 PF00392 Bacterial regulatory proteins, gntR family VP_RS06200 PF07702 UTRA domain VP_RS06215 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VP_RS06215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VP_RS06215 PF02824 TGS domain VP_RS06215 PF03129 Anticodon binding domain VP_RS06220 PF05198 Translation initiation factor IF-3, N-terminal domain VP_RS06220 PF00707 Translation initiation factor IF-3, C-terminal domain VP_RS06225 PF01632 Ribosomal protein L35 VP_RS06230 PF00453 Ribosomal protein L20 VP_RS06235 PF01906 Putative heavy-metal-binding VP_RS06265 PF00990 Diguanylate cyclase, GGDEF domain VP_RS06265 PF17158 Membrane-associated sensor, integral membrane domain VP_RS06270 PF01409 tRNA synthetases class II core domain (F) VP_RS06270 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VP_RS06275 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VP_RS06275 PF01588 Putative tRNA binding domain VP_RS06275 PF03483 B3/4 domain VP_RS06275 PF03484 tRNA synthetase B5 domain VP_RS06275 PF03147 Ferredoxin-fold anticodon binding domain VP_RS06285 PF00216 Bacterial DNA-binding protein VP_RS06295 PF05724 Thiopurine S-methyltransferase (TPMT) VP_RS06300 PF02222 ATP-grasp domain VP_RS06305 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VP_RS06305 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VP_RS06310 PF04172 LrgB-like family VP_RS06315 PF03788 LrgA family VP_RS06320 PF08411 Exonuclease C-terminal VP_RS06320 PF00929 Exonuclease VP_RS06330 PF13460 NAD(P)H-binding VP_RS06335 PF02277 Phosphoribosyltransferase VP_RS06340 PF02654 Cobalamin-5-phosphate synthase VP_RS06345 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VP_RS06360 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VP_RS06365 PF01032 FecCD transport family VP_RS06370 PF00005 ABC transporter VP_RS06390 PF03466 LysR substrate binding domain VP_RS06390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS06410 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VP_RS06415 PF16363 GDP-mannose 4,6 dehydratase VP_RS06420 PF04991 LicD family VP_RS06425 PF01863 Protein of unknown function DUF45 VP_RS06430 PF05971 RNA methyltransferase VP_RS06450 PF00392 Bacterial regulatory proteins, gntR family VP_RS06455 PF00171 Aldehyde dehydrogenase family VP_RS06460 PF05544 Proline racemase VP_RS06475 PF02423 Ornithine cyclodeaminase/mu-crystallin family VP_RS06480 PF00701 Dihydrodipicolinate synthetase family VP_RS06485 PF08402 TOBE domain VP_RS06485 PF00005 ABC transporter VP_RS06490 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS06495 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS06505 PF08453 Peptidase family M9 N-terminal VP_RS06505 PF01752 Collagenase VP_RS06515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP_RS06515 PF00005 ABC transporter VP_RS06520 PF00005 ABC transporter VP_RS06520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP_RS06525 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS06525 PF12911 N-terminal TM domain of oligopeptide transport permease C VP_RS06530 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS06535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP_RS06540 PF07687 Peptidase dimerisation domain VP_RS06540 PF01546 Peptidase family M20/M25/M40 VP_RS06545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VP_RS06550 PF04209 homogentisate 1,2-dioxygenase VP_RS06560 PF02798 Glutathione S-transferase, N-terminal domain VP_RS06560 PF14497 Glutathione S-transferase, C-terminal domain VP_RS06605 PF13533 Biotin-lipoyl like VP_RS06615 PF02405 Permease MlaE VP_RS06620 PF00005 ABC transporter VP_RS06635 PF12795 Mechanosensitive ion channel porin domain VP_RS06635 PF00924 Mechanosensitive ion channel VP_RS06635 PF12794 Mechanosensitive ion channel inner membrane domain 1 VP_RS06640 PF01546 Peptidase family M20/M25/M40 VP_RS06640 PF07687 Peptidase dimerisation domain VP_RS06645 PF08543 Phosphomethylpyrimidine kinase VP_RS06650 PF03466 LysR substrate binding domain VP_RS06650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS06670 PF00300 Histidine phosphatase superfamily (branch 1) VP_RS06685 PF00939 Sodium:sulfate symporter transmembrane region VP_RS06690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS06690 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP_RS06690 PF00512 His Kinase A (phospho-acceptor) domain VP_RS06695 PF00158 Sigma-54 interaction domain VP_RS06695 PF02954 Bacterial regulatory protein, Fis family VP_RS06695 PF00072 Response regulator receiver domain VP_RS06700 PF00990 Diguanylate cyclase, GGDEF domain VP_RS06700 PF00563 EAL domain VP_RS06700 PF03707 Bacterial signalling protein N terminal repeat VP_RS06705 PF11871 Domain of unknown function (DUF3391) VP_RS06705 PF01966 HD domain VP_RS06710 PF01810 LysE type translocator VP_RS06715 PF11230 Protein of unknown function (DUF3029) VP_RS06720 PF04055 Radical SAM superfamily VP_RS06730 PF03741 Integral membrane protein TerC family VP_RS06735 PF08525 Opacity-associated protein A N-terminal motif VP_RS06735 PF01551 Peptidase family M23 VP_RS06735 PF01476 LysM domain VP_RS06760 PF02954 Bacterial regulatory protein, Fis family VP_RS06760 PF00158 Sigma-54 interaction domain VP_RS06765 PF10431 C-terminal, D2-small domain, of ClpB protein VP_RS06765 PF17871 AAA lid domain VP_RS06765 PF07724 AAA domain (Cdc48 subfamily) VP_RS06765 PF00004 ATPase family associated with various cellular activities (AAA) VP_RS06770 PF05638 Type VI secretion system effector, Hcp VP_RS06775 PF04717 Type VI secretion system, phage-baseplate injector VP_RS06800 PF00069 Protein kinase domain VP_RS06835 PF01037 Lrp/AsnC ligand binding domain VP_RS06915 PF01966 HD domain VP_RS06920 PF00465 Iron-containing alcohol dehydrogenase VP_RS06925 PF03222 Tryptophan/tyrosine permease family VP_RS06945 PF00664 ABC transporter transmembrane region VP_RS06945 PF00005 ABC transporter VP_RS06950 PF00664 ABC transporter transmembrane region VP_RS06950 PF00005 ABC transporter VP_RS06975 PF00012 Hsp70 protein VP_RS06980 PF00012 Hsp70 protein VP_RS06990 PF00990 Diguanylate cyclase, GGDEF domain VP_RS06990 PF17158 Membrane-associated sensor, integral membrane domain VP_RS07020 PF00384 Molybdopterin oxidoreductase VP_RS07020 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VP_RS07020 PF01568 Molydopterin dinucleotide binding domain VP_RS07025 PF12800 4Fe-4S binding domain VP_RS07025 PF13247 4Fe-4S dicluster domain VP_RS07030 PF04976 DMSO reductase anchor subunit (DmsC) VP_RS07035 PF02613 Nitrate reductase delta subunit VP_RS07045 PF02525 Flavodoxin-like fold VP_RS07050 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VP_RS07050 PF00270 DEAD/DEAH box helicase VP_RS07050 PF11898 Domain of unknown function (DUF3418) VP_RS07050 PF00271 Helicase conserved C-terminal domain VP_RS07050 PF04408 Helicase associated domain (HA2) VP_RS07065 PF02028 BCCT, betaine/carnitine/choline family transporter VP_RS07075 PF02397 Bacterial sugar transferase VP_RS07080 PF00535 Glycosyl transferase family 2 VP_RS07085 PF00534 Glycosyl transferases group 1 VP_RS07085 PF13439 Glycosyltransferase Family 4 VP_RS07115 PF00534 Glycosyl transferases group 1 VP_RS07115 PF13439 Glycosyltransferase Family 4 VP_RS07120 PF00534 Glycosyl transferases group 1 VP_RS07120 PF13439 Glycosyltransferase Family 4 VP_RS07125 PF02954 Bacterial regulatory protein, Fis family VP_RS07125 PF00072 Response regulator receiver domain VP_RS07125 PF00158 Sigma-54 interaction domain VP_RS07140 PF10531 SLBB domain VP_RS07140 PF02563 Polysaccharide biosynthesis/export protein VP_RS07150 PF01740 STAS domain VP_RS07155 PF14743 DNA ligase OB-like domain VP_RS07155 PF01068 ATP dependent DNA ligase domain VP_RS07165 PF01554 MatE VP_RS07170 PF00677 Lumazine binding domain VP_RS07180 PF03881 Fructosamine kinase VP_RS07185 PF01339 CheB methylesterase VP_RS07185 PF00072 Response regulator receiver domain VP_RS07190 PF00990 Diguanylate cyclase, GGDEF domain VP_RS07190 PF05230 MASE2 domain VP_RS07200 PF00877 NlpC/P60 family VP_RS07205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS07205 PF00672 HAMP domain VP_RS07205 PF17202 Single cache domain 3 VP_RS07245 PF00480 ROK family VP_RS07255 PF00994 Probable molybdopterin binding domain VP_RS07255 PF03454 MoeA C-terminal region (domain IV) VP_RS07255 PF03453 MoeA N-terminal region (domain I and II) VP_RS07260 PF12804 MobA-like NTP transferase domain VP_RS07265 PF08402 TOBE domain VP_RS07265 PF00005 ABC transporter VP_RS07270 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS07275 PF12849 PBP superfamily domain VP_RS07280 PF02954 Bacterial regulatory protein, Fis family VP_RS07280 PF00072 Response regulator receiver domain VP_RS07280 PF00158 Sigma-54 interaction domain VP_RS07285 PF00512 His Kinase A (phospho-acceptor) domain VP_RS07285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS07290 PF00005 ABC transporter VP_RS07290 PF12848 ABC transporter VP_RS07295 PF02634 FdhD/NarQ family VP_RS07315 PF02613 Nitrate reductase delta subunit VP_RS07325 PF01568 Molydopterin dinucleotide binding domain VP_RS07325 PF00384 Molybdopterin oxidoreductase VP_RS07325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VP_RS07330 PF13247 4Fe-4S dicluster domain VP_RS07365 PF00909 Ammonium Transporter Family VP_RS07375 PF02146 Sir2 family VP_RS07380 PF13416 Bacterial extracellular solute-binding protein VP_RS07385 PF13416 Bacterial extracellular solute-binding protein VP_RS07390 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS07395 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS07400 PF08402 TOBE domain VP_RS07400 PF00005 ABC transporter VP_RS07420 PF01171 PP-loop family VP_RS07425 PF00582 Universal stress protein family VP_RS07430 PF13545 Crp-like helix-turn-helix domain VP_RS07430 PF00027 Cyclic nucleotide-binding domain VP_RS07445 PF00403 Heavy-metal-associated domain VP_RS07455 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VP_RS07455 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VP_RS07470 PF00115 Cytochrome C and Quinol oxidase polypeptide I VP_RS07485 PF09308 LuxQ, periplasmic VP_RS07485 PF00072 Response regulator receiver domain VP_RS07485 PF00512 His Kinase A (phospho-acceptor) domain VP_RS07485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS07625 PF05840 Bacteriophage replication gene A protein (GPA) VP_RS07660 PF06303 MatP N-terminal domain VP_RS07660 PF17414 MatP C-terminal ribbon-helix-helix domain VP_RS07665 PF05362 Lon protease (S16) C-terminal proteolytic domain VP_RS07665 PF13654 AAA domain VP_RS07670 PF07977 FabA-like domain VP_RS07675 PF04957 Ribosome modulation factor VP_RS07695 PF01170 Putative RNA methylase family UPF0020 VP_RS07695 PF02926 THUMP domain VP_RS07695 PF10672 S-adenosylmethionine-dependent methyltransferase VP_RS07700 PF07126 Cell-division protein ZapC VP_RS07705 PF01180 Dihydroorotate dehydrogenase VP_RS07710 PF05088 Bacterial NAD-glutamate dehydrogenase VP_RS07720 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VP_RS07720 PF01433 Peptidase family M1 domain VP_RS07720 PF11940 Domain of unknown function (DUF3458) Ig-like fold VP_RS07730 PF00595 PDZ domain VP_RS07730 PF03572 Peptidase family S41 VP_RS07730 PF11818 C-terminal domain of tail specific protease (DUF3340) VP_RS07730 PF17804 Tail specific protease N-terminal domain VP_RS07735 PF17516 ProQ C-terminal domain VP_RS07735 PF04352 ProQ/FINO family VP_RS07740 PF13185 GAF domain VP_RS07745 PF00664 ABC transporter transmembrane region VP_RS07745 PF00005 ABC transporter VP_RS07750 PF04403 Paraquat-inducible protein A VP_RS07755 PF02470 MlaD protein VP_RS07760 PF01189 16S rRNA methyltransferase RsmB/F VP_RS07760 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VP_RS07760 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VP_RS07780 PF00793 DAHP synthetase I family VP_RS07785 PF04461 Protein of unknown function (DUF520) VP_RS07790 PF10414 Sirohaem synthase dimerisation region VP_RS07790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VP_RS07790 PF14824 Sirohaem biosynthesis protein central VP_RS07795 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP_RS07800 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS07805 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS07810 PF00005 ABC transporter VP_RS07815 PF01027 Inhibitor of apoptosis-promoting Bax1 VP_RS07825 PF04358 DsrC like protein VP_RS07830 PF00708 Acylphosphatase VP_RS07835 PF02743 Cache domain VP_RS07835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS07835 PF00672 HAMP domain VP_RS07840 PF17785 PUA-like domain VP_RS07840 PF10672 S-adenosylmethionine-dependent methyltransferase VP_RS07855 PF00691 OmpA family VP_RS07855 PF05736 OprF membrane domain VP_RS07870 PF00691 OmpA family VP_RS07870 PF05736 OprF membrane domain VP_RS07880 PF00990 Diguanylate cyclase, GGDEF domain VP_RS07880 PF17158 Membrane-associated sensor, integral membrane domain VP_RS07885 PF06508 Queuosine biosynthesis protein QueC VP_RS07890 PF04055 Radical SAM superfamily VP_RS07905 PF00089 Trypsin VP_RS07915 PF16177 Acetyl-coenzyme A synthetase N-terminus VP_RS07915 PF13193 AMP-binding enzyme C-terminal domain VP_RS07915 PF00501 AMP-binding enzyme VP_RS07920 PF04303 PrpF protein VP_RS07925 PF00330 Aconitase family (aconitate hydratase) VP_RS07925 PF00694 Aconitase C-terminal domain VP_RS07930 PF00285 Citrate synthase, C-terminal domain VP_RS07960 PF01970 Tripartite tricarboxylate transporter TctA family VP_RS07965 PF01925 Sulfite exporter TauE/SafE VP_RS07975 PF05844 YopD protein VP_RS07985 PF07720 Tetratricopeptide repeat VP_RS07990 PF04792 V antigen (LcrV) protein VP_RS07995 PF07216 LcrG protein VP_RS08000 PF09621 Type III secretion system regulator (LcrR) VP_RS08005 PF00771 FHIPEP family VP_RS08025 PF09059 TyeA VP_RS08030 PF07201 HrpJ-like domain VP_RS08035 PF02874 ATP synthase alpha/beta family, beta-barrel domain VP_RS08035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VP_RS08035 PF18269 T3SS EscN ATPase C-terminal domain VP_RS08050 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VP_RS08055 PF00813 FliP family VP_RS08060 PF01313 Bacterial export proteins, family 3 VP_RS08065 PF01311 Bacterial export proteins, family 1 VP_RS08070 PF01312 FlhB HrpN YscU SpaS Family VP_RS08075 PF03466 LysR substrate binding domain VP_RS08075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS08080 PF12146 Serine aminopeptidase, S33 VP_RS08085 PF12146 Serine aminopeptidase, S33 VP_RS08115 PF02661 Fic/DOC family VP_RS08125 PF02108 Flagellar assembly protein FliH VP_RS08135 PF01514 Secretory protein of YscJ/FliF family VP_RS08140 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI VP_RS08150 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) VP_RS08155 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF VP_RS08165 PF16693 Inner membrane component of T3SS, periplasmic domain VP_RS08165 PF16697 Inner membrane component of T3SS, cytoplasmic domain VP_RS08170 PF00263 Bacterial type II and III secretion system protein VP_RS08170 PF03958 Bacterial type II/III secretion system short domain VP_RS08185 PF12833 Helix-turn-helix domain VP_RS08205 PF00171 Aldehyde dehydrogenase family VP_RS08210 PF01590 GAF domain VP_RS08210 PF02954 Bacterial regulatory protein, Fis family VP_RS08210 PF00158 Sigma-54 interaction domain VP_RS08225 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VP_RS08225 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VP_RS08230 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VP_RS08235 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VP_RS08235 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VP_RS08240 PF00072 Response regulator receiver domain VP_RS08240 PF12431 Transcriptional regulator VP_RS08245 PF17203 Single cache domain 3 VP_RS08245 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VP_RS08245 PF00989 PAS fold VP_RS08245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS08260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS08275 PF00034 Cytochrome c VP_RS08275 PF03150 Di-haem cytochrome c peroxidase VP_RS08280 PF00696 Amino acid kinase family VP_RS08280 PF13840 ACT domain VP_RS08285 PF06339 Ectoine synthase VP_RS08290 PF00202 Aminotransferase class-III VP_RS08295 PF00583 Acetyltransferase (GNAT) family VP_RS08300 PF02028 BCCT, betaine/carnitine/choline family transporter VP_RS08315 PF00005 ABC transporter VP_RS08315 PF00571 CBS domain VP_RS08320 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS08325 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VP_RS08335 PF00501 AMP-binding enzyme VP_RS08355 PF00486 Transcriptional regulatory protein, C terminal VP_RS08355 PF00072 Response regulator receiver domain VP_RS08360 PF00512 His Kinase A (phospho-acceptor) domain VP_RS08360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS08360 PF08521 Two-component sensor kinase N-terminal VP_RS08365 PF00884 Sulfatase VP_RS08385 PF01235 Sodium:alanine symporter family VP_RS08395 PF01810 LysE type translocator VP_RS08400 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VP_RS08405 PF03279 Bacterial lipid A biosynthesis acyltransferase VP_RS08410 PF13520 Amino acid permease VP_RS08420 PF04204 Homoserine O-succinyltransferase VP_RS08435 PF00563 EAL domain VP_RS08435 PF03707 Bacterial signalling protein N terminal repeat VP_RS08435 PF00990 Diguanylate cyclase, GGDEF domain VP_RS08440 PF01627 Hpt domain VP_RS08440 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VP_RS08440 PF00672 HAMP domain VP_RS08440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS08440 PF00512 His Kinase A (phospho-acceptor) domain VP_RS08440 PF00072 Response regulator receiver domain VP_RS08455 PF00132 Bacterial transferase hexapeptide (six repeats) VP_RS08455 PF12464 Maltose acetyltransferase VP_RS08465 PF01928 CYTH domain VP_RS08475 PF04237 YjbR VP_RS08480 PF01047 MarR family VP_RS08490 PF12833 Helix-turn-helix domain VP_RS08495 PF02272 DHHA1 domain VP_RS08495 PF01411 tRNA synthetases class II (A) VP_RS08495 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VP_RS08505 PF00196 Bacterial regulatory proteins, luxR family VP_RS08505 PF00563 EAL domain VP_RS08510 PF01368 DHH family VP_RS08510 PF02833 DHHA2 domain VP_RS08515 PF00202 Aminotransferase class-III VP_RS08520 PF00171 Aldehyde dehydrogenase family VP_RS08525 PF04371 Porphyromonas-type peptidyl-arginine deiminase VP_RS08530 PF00795 Carbon-nitrogen hydrolase VP_RS08535 PF01266 FAD dependent oxidoreductase VP_RS08545 PF01381 Helix-turn-helix VP_RS08545 PF07883 Cupin domain VP_RS08550 PF07722 Peptidase C26 VP_RS08555 PF00120 Glutamine synthetase, catalytic domain VP_RS08560 PF03553 Na+/H+ antiporter family VP_RS08630 PF01042 Endoribonuclease L-PSP VP_RS08695 PF01588 Putative tRNA binding domain VP_RS08720 PF13676 TIR domain VP_RS08780 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system VP_RS08785 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VP_RS08820 PF13091 PLD-like domain VP_RS09080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VP_RS09085 PF00589 Phage integrase family VP_RS09085 PF13495 Phage integrase, N-terminal SAM-like domain VP_RS09100 PF13302 Acetyltransferase (GNAT) domain VP_RS09105 PF18024 Helix-turn-helix domain VP_RS09105 PF00158 Sigma-54 interaction domain VP_RS09110 PF05128 Domain of unknown function (DUF697) VP_RS09115 PF04317 YcjX-like family, DUF463 VP_RS09130 PF04715 Anthranilate synthase component I, N terminal region VP_RS09130 PF00425 chorismate binding enzyme VP_RS09135 PF00072 Response regulator receiver domain VP_RS09135 PF09308 LuxQ, periplasmic VP_RS09135 PF00512 His Kinase A (phospho-acceptor) domain VP_RS09135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS09145 PF00293 NUDIX domain VP_RS09150 PF03222 Tryptophan/tyrosine permease family VP_RS09155 PF03313 Serine dehydratase alpha chain VP_RS09155 PF03315 Serine dehydratase beta chain VP_RS09160 PF00563 EAL domain VP_RS09160 PF04940 Sensors of blue-light using FAD VP_RS09170 PF01242 6-pyruvoyl tetrahydropterin synthase VP_RS09185 PF00313 'Cold-shock' DNA-binding domain VP_RS09190 PF17876 Cold shock domain VP_RS09190 PF08461 Ribonuclease R winged-helix domain VP_RS09190 PF08206 Ribonuclease B OB domain VP_RS09190 PF00773 RNB domain VP_RS09190 PF00575 S1 RNA binding domain VP_RS09200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS09200 PF12729 Four helix bundle sensory module for signal transduction VP_RS09200 PF00672 HAMP domain VP_RS09205 PF01336 OB-fold nucleic acid binding domain VP_RS09205 PF00152 tRNA synthetases class II (D, K and N) VP_RS09215 PF00392 Bacterial regulatory proteins, gntR family VP_RS09215 PF00155 Aminotransferase class I and II VP_RS09230 PF00155 Aminotransferase class I and II VP_RS09250 PF00672 HAMP domain VP_RS09250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS09255 PF02028 BCCT, betaine/carnitine/choline family transporter VP_RS09260 PF01047 MarR family VP_RS09265 PF00196 Bacterial regulatory proteins, luxR family VP_RS09265 PF00072 Response regulator receiver domain VP_RS09270 PF07730 Histidine kinase VP_RS09270 PF17200 Single Cache domain 2 VP_RS09275 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VP_RS09285 PF03480 Bacterial extracellular solute-binding protein, family 7 VP_RS09300 PF00753 Metallo-beta-lactamase superfamily VP_RS09305 PF05951 Bacterial protein of unknown function (DUF882) VP_RS09310 PF03734 L,D-transpeptidase catalytic domain VP_RS09310 PF01471 Putative peptidoglycan binding domain VP_RS09335 PF00925 GTP cyclohydrolase II VP_RS09340 PF03918 Cytochrome C biogenesis protein VP_RS09345 PF08534 Redoxin VP_RS09350 PF01578 Cytochrome C assembly protein VP_RS09350 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VP_RS09355 PF03916 Polysulphide reductase, NrfD VP_RS09360 PF13247 4Fe-4S dicluster domain VP_RS09370 PF02335 Cytochrome c552 VP_RS09385 PF00521 DNA gyrase/topoisomerase IV, subunit A VP_RS09385 PF03989 DNA gyrase C-terminal domain, beta-propeller VP_RS09395 PF03477 ATP cone domain VP_RS09395 PF02867 Ribonucleotide reductase, barrel domain VP_RS09395 PF00317 Ribonucleotide reductase, all-alpha domain VP_RS09400 PF00268 Ribonucleotide reductase, small chain VP_RS09410 PF00994 Probable molybdopterin binding domain VP_RS09425 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VP_RS09430 PF16653 Saccharopine dehydrogenase C-terminal domain VP_RS09430 PF03435 Saccharopine dehydrogenase NADP binding domain VP_RS09435 PF00202 Aminotransferase class-III VP_RS09460 PF01066 CDP-alcohol phosphatidyltransferase VP_RS09465 PF08459 UvrC Helix-hairpin-helix N-terminal VP_RS09465 PF02151 UvrB/uvrC motif VP_RS09465 PF01541 GIY-YIG catalytic domain VP_RS09470 PF00072 Response regulator receiver domain VP_RS09470 PF00196 Bacterial regulatory proteins, luxR family VP_RS09475 PF00136 DNA polymerase family B VP_RS09475 PF03104 DNA polymerase family B, exonuclease domain VP_RS09485 PF01132 Elongation factor P (EF-P) OB domain VP_RS09485 PF09285 Elongation factor P, C-terminal VP_RS09485 PF08207 Elongation factor P (EF-P) KOW-like domain VP_RS09490 PF04269 Protein of unknown function, DUF440 VP_RS09495 PF00849 RNA pseudouridylate synthase VP_RS09495 PF01479 S4 domain VP_RS09505 PF01300 Telomere recombination VP_RS09510 PF02811 PHP domain VP_RS09515 PF08056 Tryptophan operon leader peptide VP_RS09520 PF00425 chorismate binding enzyme VP_RS09520 PF04715 Anthranilate synthase component I, N terminal region VP_RS09525 PF00117 Glutamine amidotransferase class-I VP_RS09530 PF02885 Glycosyl transferase family, helical bundle domain VP_RS09530 PF00591 Glycosyl transferase family, a/b domain VP_RS09535 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VP_RS09535 PF00218 Indole-3-glycerol phosphate synthase VP_RS09540 PF00291 Pyridoxal-phosphate dependent enzyme VP_RS09545 PF00290 Tryptophan synthase alpha chain VP_RS09550 PF13545 Crp-like helix-turn-helix domain VP_RS09550 PF00027 Cyclic nucleotide-binding domain VP_RS09555 PF00501 AMP-binding enzyme VP_RS09555 PF13193 AMP-binding enzyme C-terminal domain VP_RS09560 PF00375 Sodium:dicarboxylate symporter family VP_RS09565 PF17327 Acyl homoserine lactone synthase VP_RS09570 PF00072 Response regulator receiver domain VP_RS09570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS09580 PF04279 Intracellular septation protein A VP_RS09585 PF03061 Thioesterase superfamily VP_RS09590 PF03795 YCII-related domain VP_RS09600 PF08267 Cobalamin-independent synthase, N-terminal domain VP_RS09600 PF01717 Cobalamin-independent synthase, Catalytic domain VP_RS09605 PF03466 LysR substrate binding domain VP_RS09605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS09620 PF01590 GAF domain VP_RS09620 PF00360 Phytochrome region VP_RS09620 PF00563 EAL domain VP_RS09620 PF00990 Diguanylate cyclase, GGDEF domain VP_RS09625 PF11842 Domain of unknown function (DUF3362) VP_RS09625 PF08497 Radical SAM N-terminal VP_RS09625 PF04055 Radical SAM superfamily VP_RS09630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS09630 PF00672 HAMP domain VP_RS09635 PF00486 Transcriptional regulatory protein, C terminal VP_RS09635 PF00072 Response regulator receiver domain VP_RS09640 PF00512 His Kinase A (phospho-acceptor) domain VP_RS09640 PF00672 HAMP domain VP_RS09640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS09660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS09660 PF03466 LysR substrate binding domain VP_RS09665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS09665 PF00529 HlyD membrane-fusion protein of T1SS VP_RS09675 PF01717 Cobalamin-independent synthase, Catalytic domain VP_RS09675 PF08267 Cobalamin-independent synthase, N-terminal domain VP_RS09685 PF02311 AraC-like ligand binding domain VP_RS09685 PF12833 Helix-turn-helix domain VP_RS09690 PF00857 Isochorismatase family VP_RS09695 PF12704 MacB-like periplasmic core domain VP_RS09695 PF02687 FtsX-like permease family VP_RS09695 PF00005 ABC transporter VP_RS09700 PF12704 MacB-like periplasmic core domain VP_RS09700 PF00005 ABC transporter VP_RS09700 PF02687 FtsX-like permease family VP_RS09705 PF00005 ABC transporter VP_RS09705 PF02687 FtsX-like permease family VP_RS09705 PF12704 MacB-like periplasmic core domain VP_RS09715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS09730 PF05958 tRNA (Uracil-5-)-methyltransferase VP_RS09730 PF01938 TRAM domain VP_RS09745 PF00085 Thioredoxin VP_RS09750 PF11412 Disulphide bond corrector protein DsbC VP_RS09750 PF02683 Cytochrome C biogenesis protein transmembrane region VP_RS09760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS09760 PF03466 LysR substrate binding domain VP_RS09765 PF00196 Bacterial regulatory proteins, luxR family VP_RS09765 PF00072 Response regulator receiver domain VP_RS09770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS09770 PF00512 His Kinase A (phospho-acceptor) domain VP_RS09775 PF13247 4Fe-4S dicluster domain VP_RS09780 PF03916 Polysulphide reductase, NrfD VP_RS09785 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VP_RS09785 PF01568 Molydopterin dinucleotide binding domain VP_RS09785 PF00384 Molybdopterin oxidoreductase VP_RS09790 PF00034 Cytochrome c VP_RS09795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VP_RS09800 PF04403 Paraquat-inducible protein A VP_RS09805 PF02470 MlaD protein VP_RS09815 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VP_RS09825 PF00535 Glycosyl transferase family 2 VP_RS09830 PF01370 NAD dependent epimerase/dehydratase family VP_RS09840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP_RS09845 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VP_RS09850 PF18073 Rubredoxin metal binding domain VP_RS09855 PF06305 Lipopolysaccharide assembly protein A domain VP_RS09860 PF00216 Bacterial DNA-binding protein VP_RS09865 PF00575 S1 RNA binding domain VP_RS09870 PF02224 Cytidylate kinase VP_RS09875 PF01343 Peptidase family S49 VP_RS09875 PF08496 Peptidase family S49 N-terminal VP_RS09880 PF00106 short chain dehydrogenase VP_RS09895 PF14579 Helix-hairpin-helix motif VP_RS09895 PF01336 OB-fold nucleic acid binding domain VP_RS09895 PF07733 Bacterial DNA polymerase III alpha NTPase domain VP_RS09895 PF02811 PHP domain VP_RS09895 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VP_RS09900 PF00072 Response regulator receiver domain VP_RS09900 PF01584 CheW-like domain VP_RS09905 PF00480 ROK family VP_RS09910 PF02887 Pyruvate kinase, alpha/beta domain VP_RS09910 PF00224 Pyruvate kinase, barrel domain VP_RS09915 PF01734 Patatin-like phospholipase VP_RS09930 PF00209 Sodium:neurotransmitter symporter family VP_RS09945 PF00367 phosphotransferase system, EIIB VP_RS09945 PF02378 Phosphotransferase system, EIIC VP_RS09950 PF01026 TatD related DNase VP_RS09955 PF09115 DNA polymerase III, delta subunit, C terminal VP_RS09960 PF02223 Thymidylate kinase VP_RS09965 PF02618 YceG-like family VP_RS09970 PF01063 Amino-transferase class IV VP_RS09975 PF02801 Beta-ketoacyl synthase, C-terminal domain VP_RS09975 PF00109 Beta-ketoacyl synthase, N-terminal domain VP_RS09980 PF00550 Phosphopantetheine attachment site VP_RS09990 PF00698 Acyl transferase domain VP_RS09995 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VP_RS09995 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VP_RS10000 PF02504 Fatty acid synthesis protein VP_RS10005 PF01783 Ribosomal L32p protein family VP_RS10010 PF02620 Large ribosomal RNA subunit accumulation protein YceD VP_RS10015 PF02545 Maf-like protein VP_RS10020 PF00849 RNA pseudouridylate synthase VP_RS10020 PF01479 S4 domain VP_RS10025 PF00575 S1 RNA binding domain VP_RS10025 PF10150 Ribonuclease E/G family VP_RS10025 PF12111 Polyribonucleotide phosphorylase C terminal VP_RS10030 PF00916 Sulfate permease family VP_RS10030 PF01740 STAS domain VP_RS10035 PF01451 Low molecular weight phosphotyrosine protein phosphatase VP_RS10040 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VP_RS10040 PF12557 Cob(I)alamin adenosyltransferase N terminal VP_RS10050 PF00485 Phosphoribulokinase / Uridine kinase family VP_RS10055 PF10609 NUBPL iron-transfer P-loop NTPase VP_RS10060 PF09334 tRNA synthetases class I (M) VP_RS10060 PF01588 Putative tRNA binding domain VP_RS10070 PF07840 FadR C-terminal domain VP_RS10070 PF00392 Bacterial regulatory proteins, gntR family VP_RS10075 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VP_RS10080 PF02600 Disulfide bond formation protein DsbB VP_RS10085 PF07517 SecA DEAD-like domain VP_RS10085 PF07516 SecA Wing and Scaffold domain VP_RS10085 PF01043 SecA preprotein cross-linking domain VP_RS10085 PF02810 SEC-C motif VP_RS10090 PF01207 Dihydrouridine synthase (Dus) VP_RS10095 PF00072 Response regulator receiver domain VP_RS10095 PF00990 Diguanylate cyclase, GGDEF domain VP_RS10100 PF02903 Alpha amylase, N-terminal ig-like domain VP_RS10100 PF00128 Alpha amylase, catalytic domain VP_RS10105 PF00005 ABC transporter VP_RS10110 PF02653 Branched-chain amino acid transport system / permease component VP_RS10120 PF04217 Protein of unknown function, DUF412 VP_RS10125 PF00871 Acetokinase family VP_RS10130 PF01515 Phosphate acetyl/butaryl transferase VP_RS10130 PF07085 DRTGG domain VP_RS10135 PF13194 Domain of unknown function (DUF4010) VP_RS10145 PF13409 Glutathione S-transferase, N-terminal domain VP_RS10150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP_RS10150 PF00005 ABC transporter VP_RS10155 PF00005 ABC transporter VP_RS10155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP_RS10160 PF12911 N-terminal TM domain of oligopeptide transport permease C VP_RS10160 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS10165 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS10170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP_RS10175 PF02391 MoaE protein VP_RS10180 PF02597 ThiS family VP_RS10185 PF01967 MoaC family VP_RS10190 PF00994 Probable molybdopterin binding domain VP_RS10195 PF06463 Molybdenum Cofactor Synthesis C VP_RS10195 PF04055 Radical SAM superfamily VP_RS10200 PF01933 Uncharacterised protein family UPF0052 VP_RS10205 PF01627 Hpt domain VP_RS10210 PF02954 Bacterial regulatory protein, Fis family VP_RS10210 PF00072 Response regulator receiver domain VP_RS10210 PF00158 Sigma-54 interaction domain VP_RS10215 PF12344 Ultra-violet resistance protein B VP_RS10215 PF02151 UvrB/uvrC motif VP_RS10215 PF04851 Type III restriction enzyme, res subunit VP_RS10215 PF00271 Helicase conserved C-terminal domain VP_RS10215 PF17757 UvrB interaction domain VP_RS10225 PF02508 Rnf-Nqr subunit, membrane protein VP_RS10230 PF04060 Putative Fe-S cluster VP_RS10235 PF12838 4Fe-4S dicluster domain VP_RS10235 PF13375 RnfC Barrel sandwich hybrid domain VP_RS10235 PF10531 SLBB domain VP_RS10235 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VP_RS10240 PF03116 NQR2, RnfD, RnfE family VP_RS10245 PF04205 FMN-binding domain VP_RS10250 PF02508 Rnf-Nqr subunit, membrane protein VP_RS10255 PF10576 Iron-sulfur binding domain of endonuclease III VP_RS10255 PF00633 Helix-hairpin-helix motif VP_RS10255 PF00730 HhH-GPD superfamily base excision DNA repair protein VP_RS10260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VP_RS10265 PF10952 Protein of unknown function (DUF2753) VP_RS10270 PF00691 OmpA family VP_RS10270 PF18393 MotY N-terminal domain VP_RS10275 PF00929 Exonuclease VP_RS10280 PF03553 Na+/H+ antiporter family VP_RS10280 PF13726 Na+-H+ antiporter family VP_RS10290 PF00462 Glutaredoxin VP_RS10295 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VP_RS10295 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VP_RS10310 PF00465 Iron-containing alcohol dehydrogenase VP_RS10310 PF00171 Aldehyde dehydrogenase family VP_RS10315 PF01914 MarC family integral membrane protein VP_RS10320 PF00520 Ion transport protein VP_RS10320 PF00027 Cyclic nucleotide-binding domain VP_RS10325 PF02774 Semialdehyde dehydrogenase, dimerisation domain VP_RS10325 PF01118 Semialdehyde dehydrogenase, NAD binding domain VP_RS10330 PF03553 Na+/H+ antiporter family VP_RS10345 PF04245 37-kD nucleoid-associated bacterial protein VP_RS10350 PF07208 Protein of unknown function (DUF1414) VP_RS10355 PF00884 Sulfatase VP_RS10355 PF11893 Domain of unknown function (DUF3413) VP_RS10365 PF00589 Phage integrase family VP_RS10365 PF14659 Phage integrase, N-terminal SAM-like domain VP_RS10425 PF00850 Histone deacetylase domain VP_RS10430 PF00106 short chain dehydrogenase VP_RS10440 PF01131 DNA topoisomerase VP_RS10440 PF01751 Toprim domain VP_RS10445 PF00881 Nitroreductase family VP_RS10450 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VP_RS10450 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS10455 PF01343 Peptidase family S49 VP_RS10460 PF17763 Glutaminase/Asparaginase C-terminal domain VP_RS10460 PF00710 Asparaginase, N-terminal VP_RS10465 PF07023 Protein of unknown function (DUF1315) VP_RS10475 PF01641 SelR domain VP_RS10480 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VP_RS10480 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VP_RS10485 PF01263 Aldose 1-epimerase VP_RS10490 PF00672 HAMP domain VP_RS10490 PF02743 Cache domain VP_RS10490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS10495 PF13847 Methyltransferase domain VP_RS10510 PF00245 Alkaline phosphatase VP_RS10520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VP_RS10525 PF03992 Antibiotic biosynthesis monooxygenase VP_RS10530 PF00924 Mechanosensitive ion channel VP_RS10530 PF05552 Conserved TM helix VP_RS10535 PF03692 Putative zinc- or iron-chelating domain VP_RS10540 PF04226 Transglycosylase associated protein VP_RS10545 PF03692 Putative zinc- or iron-chelating domain VP_RS10555 PF03313 Serine dehydratase alpha chain VP_RS10560 PF01042 Endoribonuclease L-PSP VP_RS10570 PF00230 Major intrinsic protein VP_RS10575 PF13662 Toprim domain VP_RS10575 PF02132 RecR protein VP_RS10580 PF02575 YbaB/EbfC DNA-binding family VP_RS10585 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VP_RS10585 PF12170 DNA polymerase III tau subunit V interacting with alpha VP_RS10585 PF12169 DNA polymerase III subunits gamma and tau domain III VP_RS10590 PF00156 Phosphoribosyl transferase domain VP_RS10595 PF04304 Protein of unknown function (DUF454) VP_RS10600 PF00072 Response regulator receiver domain VP_RS10605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS10605 PF03466 LysR substrate binding domain VP_RS10610 PF00156 Phosphoribosyl transferase domain VP_RS10615 PF02674 Colicin V production protein VP_RS10620 PF05036 Sporulation related domain VP_RS10625 PF02875 Mur ligase family, glutamate ligase domain VP_RS10625 PF08245 Mur ligase middle domain VP_RS10630 PF17848 Acetyl-coA carboxylase zinc finger domain VP_RS10630 PF01039 Carboxyl transferase domain VP_RS10635 PF01416 tRNA pseudouridine synthase VP_RS10645 PF01118 Semialdehyde dehydrogenase, NAD binding domain VP_RS10645 PF02774 Semialdehyde dehydrogenase, dimerisation domain VP_RS10650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VP_RS10650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VP_RS10650 PF11890 Domain of unknown function (DUF3410) VP_RS10655 PF00109 Beta-ketoacyl synthase, N-terminal domain VP_RS10655 PF02801 Beta-ketoacyl synthase, C-terminal domain VP_RS10660 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VP_RS10660 PF01266 FAD dependent oxidoreductase VP_RS10665 PF03358 NADPH-dependent FMN reductase VP_RS10670 PF08891 YfcL protein VP_RS10675 PF04315 Elongation factor P hydroxylase VP_RS10680 PF03458 UPF0126 domain VP_RS10685 PF01264 Chorismate synthase VP_RS10690 PF05175 Methyltransferase small domain VP_RS10695 PF01713 Smr domain VP_RS10700 PF00300 Histidine phosphatase superfamily (branch 1) VP_RS10705 PF00675 Insulinase (Peptidase family M16) VP_RS10705 PF16187 Middle or third domain of peptidase_M16 VP_RS10705 PF05193 Peptidase M16 inactive domain VP_RS10715 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VP_RS10715 PF00378 Enoyl-CoA hydratase/isomerase VP_RS10715 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VP_RS10720 PF00108 Thiolase, N-terminal domain VP_RS10720 PF02803 Thiolase, C-terminal domain VP_RS10725 PF04542 Sigma-70 region 2 VP_RS10725 PF08281 Sigma-70, region 4 VP_RS10735 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VP_RS10740 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VP_RS10745 PF04333 MlaA lipoprotein VP_RS10755 PF03918 Cytochrome C biogenesis protein VP_RS10760 PF08534 Redoxin VP_RS10765 PF01578 Cytochrome C assembly protein VP_RS10765 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VP_RS10770 PF03100 CcmE VP_RS10775 PF04995 Heme exporter protein D (CcmD) VP_RS10780 PF01578 Cytochrome C assembly protein VP_RS10785 PF03379 CcmB protein VP_RS10790 PF00005 ABC transporter VP_RS10800 PF01584 CheW-like domain VP_RS10810 PF13614 AAA domain VP_RS10815 PF00072 Response regulator receiver domain VP_RS10815 PF01339 CheB methylesterase VP_RS10820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS10820 PF02895 Signal transducing histidine kinase, homodimeric domain VP_RS10820 PF01584 CheW-like domain VP_RS10820 PF01627 Hpt domain VP_RS10820 PF00072 Response regulator receiver domain VP_RS10825 PF04344 Chemotaxis phosphatase, CheZ VP_RS10830 PF00072 Response regulator receiver domain VP_RS10835 PF04542 Sigma-70 region 2 VP_RS10835 PF04539 Sigma-70 region 3 VP_RS10835 PF04545 Sigma-70, region 4 VP_RS10840 PF10609 NUBPL iron-transfer P-loop NTPase VP_RS10845 PF00448 SRP54-type protein, GTPase domain VP_RS10850 PF00771 FHIPEP family VP_RS10855 PF01312 FlhB HrpN YscU SpaS Family VP_RS10860 PF01311 Bacterial export proteins, family 1 VP_RS10865 PF01313 Bacterial export proteins, family 3 VP_RS10870 PF00813 FliP family VP_RS10875 PF04347 Flagellar biosynthesis protein, FliO VP_RS10880 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VP_RS10885 PF02154 Flagellar motor switch protein FliM VP_RS10885 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VP_RS10905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VP_RS10905 PF18269 T3SS EscN ATPase C-terminal domain VP_RS10915 PF01706 FliG C-terminal domain VP_RS10915 PF14842 FliG N-terminal domain VP_RS10915 PF14841 FliG middle domain VP_RS10920 PF08345 Flagellar M-ring protein C-terminal VP_RS10920 PF01514 Secretory protein of YscJ/FliF family VP_RS10925 PF02049 Flagellar hook-basal body complex protein FliE VP_RS10930 PF00158 Sigma-54 interaction domain VP_RS10930 PF00072 Response regulator receiver domain VP_RS10930 PF02954 Bacterial regulatory protein, Fis family VP_RS10935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS10935 PF00512 His Kinase A (phospho-acceptor) domain VP_RS10940 PF00158 Sigma-54 interaction domain VP_RS10940 PF06490 Flagellar regulatory protein FleQ VP_RS10940 PF02954 Bacterial regulatory protein, Fis family VP_RS10945 PF02561 Flagellar protein FliS VP_RS10955 PF07195 Flagellar hook-associated protein 2 C-terminus VP_RS10955 PF02465 Flagellar hook-associated protein 2 N-terminus VP_RS10955 PF07196 Flagellin hook IN motif VP_RS10960 PF03646 FlaG protein VP_RS10965 PF00669 Bacterial flagellin N-terminal helical region VP_RS10965 PF00700 Bacterial flagellin C-terminal helical region VP_RS10965 PF07196 Flagellin hook IN motif VP_RS10970 PF07196 Flagellin hook IN motif VP_RS10970 PF00700 Bacterial flagellin C-terminal helical region VP_RS10970 PF00669 Bacterial flagellin N-terminal helical region VP_RS10975 PF00700 Bacterial flagellin C-terminal helical region VP_RS10975 PF07196 Flagellin hook IN motif VP_RS10975 PF00669 Bacterial flagellin N-terminal helical region VP_RS10980 PF04261 Dyp-type peroxidase family VP_RS10985 PF11143 Protein of unknown function (DUF2919) VP_RS11005 PF03960 ArsC family VP_RS11010 PF07687 Peptidase dimerisation domain VP_RS11010 PF01546 Peptidase family M20/M25/M40 VP_RS11030 PF00701 Dihydrodipicolinate synthetase family VP_RS11035 PF01842 ACT domain VP_RS11040 PF00578 AhpC/TSA family VP_RS11045 PF01594 AI-2E family transporter VP_RS11055 PF01435 Peptidase family M48 VP_RS11055 PF13181 Tetratricopeptide repeat VP_RS11060 PF03960 ArsC family VP_RS11065 PF03358 NADPH-dependent FMN reductase VP_RS11080 PF00860 Permease family VP_RS11090 PF00586 AIR synthase related protein, N-terminal domain VP_RS11090 PF02769 AIR synthase related protein, C-terminal domain VP_RS11095 PF00551 Formyl transferase VP_RS11100 PF13230 Glutamine amidotransferases class-II VP_RS11105 PF13580 SIS domain VP_RS11110 PF09317 Domain of unknown function (DUF1974) VP_RS11110 PF02770 Acyl-CoA dehydrogenase, middle domain VP_RS11110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VP_RS11110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VP_RS11115 PF00916 Sulfate permease family VP_RS11115 PF01740 STAS domain VP_RS11125 PF00929 Exonuclease VP_RS11130 PF00075 RNase H VP_RS11135 PF08241 Methyltransferase domain VP_RS11140 PF16123 Hydroxyacylglutathione hydrolase C-terminus VP_RS11140 PF00753 Metallo-beta-lactamase superfamily VP_RS11145 PF01476 LysM domain VP_RS11145 PF01464 Transglycosylase SLT domain VP_RS11155 PF03372 Endonuclease/Exonuclease/phosphatase family VP_RS11160 PF00543 Nitrogen regulatory protein P-II VP_RS11165 PF00034 Cytochrome c VP_RS11170 PF09179 TilS substrate binding domain VP_RS11170 PF01171 PP-loop family VP_RS11170 PF11734 TilS substrate C-terminal domain VP_RS11175 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VP_RS11180 PF07733 Bacterial DNA polymerase III alpha NTPase domain VP_RS11180 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VP_RS11180 PF14579 Helix-hairpin-helix motif VP_RS11180 PF02811 PHP domain VP_RS11180 PF01336 OB-fold nucleic acid binding domain VP_RS11190 PF00132 Bacterial transferase hexapeptide (six repeats) VP_RS11190 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VP_RS11195 PF07977 FabA-like domain VP_RS11200 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VP_RS11200 PF00132 Bacterial transferase hexapeptide (six repeats) VP_RS11205 PF03938 Outer membrane protein (OmpH-like) VP_RS11210 PF07244 Surface antigen variable number repeat VP_RS11210 PF01103 Surface antigen VP_RS11215 PF17820 PDZ domain VP_RS11215 PF02163 Peptidase family M50 VP_RS11220 PF13288 DXP reductoisomerase C-terminal domain VP_RS11220 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VP_RS11220 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VP_RS11230 PF01255 Putative undecaprenyl diphosphate synthase VP_RS11235 PF01765 Ribosome recycling factor VP_RS11240 PF00696 Amino acid kinase family VP_RS11245 PF00889 Elongation factor TS VP_RS11250 PF00318 Ribosomal protein S2 VP_RS11255 PF00557 Metallopeptidase family M24 VP_RS11260 PF01842 ACT domain VP_RS11260 PF01909 Nucleotidyltransferase domain VP_RS11260 PF01966 HD domain VP_RS11260 PF08335 GlnD PII-uridylyltransferase VP_RS11265 PF11944 Protein of unknown function (DUF3461) VP_RS11270 PF00849 RNA pseudouridylate synthase VP_RS11275 PF04287 tRNA pseudouridine synthase C VP_RS11300 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VP_RS11305 PF03806 AbgT putative transporter family VP_RS11310 PF00444 Ribosomal protein L36 VP_RS11315 PF01197 Ribosomal protein L31 VP_RS11320 PF18389 TrmO C-terminal domain VP_RS11320 PF01980 tRNA-methyltransferase O VP_RS11325 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VP_RS11325 PF04073 Aminoacyl-tRNA editing domain VP_RS11325 PF03129 Anticodon binding domain VP_RS11335 PF06786 Uncharacterised protein family (UPF0253) VP_RS11345 PF00209 Sodium:neurotransmitter symporter family VP_RS11360 PF01272 Transcription elongation factor, GreA/GreB, C-term VP_RS11360 PF03449 Transcription elongation factor, N-terminal VP_RS11365 PF00271 Helicase conserved C-terminal domain VP_RS11365 PF00570 HRDC domain VP_RS11365 PF16124 RecQ zinc-binding VP_RS11365 PF09382 RQC domain VP_RS11365 PF00270 DEAD/DEAH box helicase VP_RS11370 PF00817 impB/mucB/samB family VP_RS11370 PF11799 impB/mucB/samB family C-terminal domain VP_RS11370 PF11798 IMS family HHH motif VP_RS11385 PF02424 ApbE family VP_RS11390 PF00970 Oxidoreductase FAD-binding domain VP_RS11390 PF00111 2Fe-2S iron-sulfur cluster binding domain VP_RS11390 PF00175 Oxidoreductase NAD-binding domain VP_RS11395 PF02508 Rnf-Nqr subunit, membrane protein VP_RS11400 PF02508 Rnf-Nqr subunit, membrane protein VP_RS11405 PF04205 FMN-binding domain VP_RS11410 PF03116 NQR2, RnfD, RnfE family VP_RS11415 PF11973 NQRA C-terminal domain VP_RS11415 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VP_RS11420 PF01722 BolA-like protein VP_RS11425 PF05175 Methyltransferase small domain VP_RS11430 PF03923 Uncharacterized lipoprotein VP_RS11430 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VP_RS11435 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VP_RS11440 PF07690 Major Facilitator Superfamily VP_RS11450 PF04545 Sigma-70, region 4 VP_RS11450 PF04542 Sigma-70 region 2 VP_RS11470 PF03502 Nucleoside-specific channel-forming protein, Tsx VP_RS11475 PF02558 Ketopantoate reductase PanE/ApbA VP_RS11475 PF08546 Ketopantoate reductase PanE/ApbA C terminal VP_RS11480 PF01965 DJ-1/PfpI family VP_RS11485 PF00266 Aminotransferase class-V VP_RS11490 PF17158 Membrane-associated sensor, integral membrane domain VP_RS11490 PF00990 Diguanylate cyclase, GGDEF domain VP_RS11495 PF02657 Fe-S metabolism associated domain VP_RS11500 PF00899 ThiF family VP_RS11505 PF03562 MltA specific insert domain VP_RS11505 PF06725 3D domain VP_RS11515 PF00696 Amino acid kinase family VP_RS11515 PF00583 Acetyltransferase (GNAT) family VP_RS11525 PF13538 UvrD-like helicase C-terminal domain VP_RS11530 PF12705 PD-(D/E)XK nuclease superfamily VP_RS11530 PF00580 UvrD/REP helicase N-terminal domain VP_RS11530 PF13361 UvrD-like helicase C-terminal domain VP_RS11535 PF17946 RecC C-terminal domain VP_RS11540 PF00884 Sulfatase VP_RS11540 PF11893 Domain of unknown function (DUF3413) VP_RS11550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS11550 PF03466 LysR substrate binding domain VP_RS11555 PF07130 YebG protein VP_RS11560 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VP_RS11560 PF14602 Hexapeptide repeat of succinyl-transferase VP_RS11565 PF03009 Glycerophosphoryl diester phosphodiesterase family VP_RS11570 PF07690 Major Facilitator Superfamily VP_RS11575 PF00230 Major intrinsic protein VP_RS11580 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VP_RS11580 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VP_RS11585 PF00455 DeoR C terminal sensor domain VP_RS11585 PF08220 DeoR-like helix-turn-helix domain VP_RS11590 PF01266 FAD dependent oxidoreductase VP_RS11590 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VP_RS11595 PF01544 CorA-like Mg2+ transporter protein VP_RS11610 PF01588 Putative tRNA binding domain VP_RS11615 PF00356 Bacterial regulatory proteins, lacI family VP_RS11630 PF00356 Bacterial regulatory proteins, lacI family VP_RS11635 PF01263 Aldose 1-epimerase VP_RS11640 PF10509 Galactokinase galactose-binding signature VP_RS11640 PF00288 GHMP kinases N terminal domain VP_RS11640 PF08544 GHMP kinases C terminal VP_RS11645 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VP_RS11645 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VP_RS11650 PF16363 GDP-mannose 4,6 dehydratase VP_RS11655 PF00356 Bacterial regulatory proteins, lacI family VP_RS11660 PF02929 Beta galactosidase small chain VP_RS11660 PF02837 Glycosyl hydrolases family 2, sugar binding domain VP_RS11660 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VP_RS11660 PF00703 Glycosyl hydrolases family 2 VP_RS11660 PF16353 Domain of unknown function(DUF4981) VP_RS11665 PF04074 YhcH/YjgK/YiaL VP_RS11675 PF03466 LysR substrate binding domain VP_RS11675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS11705 PF00437 Type II/IV secretion system protein VP_RS11735 PF13629 Pilus formation protein N terminal region VP_RS11735 PF04972 BON domain VP_RS11735 PF00263 Bacterial type II and III secretion system protein VP_RS11755 PF12833 Helix-turn-helix domain VP_RS11755 PF02805 Metal binding domain of Ada VP_RS11760 PF00501 AMP-binding enzyme VP_RS11770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS11770 PF03466 LysR substrate binding domain VP_RS11775 PF00679 Elongation factor G C-terminus VP_RS11775 PF14492 Elongation Factor G, domain II VP_RS11775 PF03764 Elongation factor G, domain IV VP_RS11775 PF00009 Elongation factor Tu GTP binding domain VP_RS11775 PF03144 Elongation factor Tu domain 2 VP_RS11780 PF18073 Rubredoxin metal binding domain VP_RS11790 PF18429 Domain of unknown function (DUF5609) VP_RS11800 PF01048 Phosphorylase superfamily VP_RS11805 PF01676 Metalloenzyme superfamily VP_RS11810 PF02885 Glycosyl transferase family, helical bundle domain VP_RS11810 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VP_RS11810 PF00591 Glycosyl transferase family, a/b domain VP_RS11815 PF01791 DeoC/LacD family aldolase VP_RS11820 PF07670 Nucleoside recognition VP_RS11820 PF07662 Na+ dependent nucleoside transporter C-terminus VP_RS11820 PF01773 Na+ dependent nucleoside transporter N-terminus VP_RS11825 PF01026 TatD related DNase VP_RS11835 PF16658 Class II release factor RF3, C-terminal domain VP_RS11835 PF03144 Elongation factor Tu domain 2 VP_RS11835 PF00009 Elongation factor Tu GTP binding domain VP_RS11855 PF13508 Acetyltransferase (GNAT) domain VP_RS11860 PF02036 SCP-2 sterol transfer family VP_RS11865 PF00990 Diguanylate cyclase, GGDEF domain VP_RS11865 PF00563 EAL domain VP_RS11865 PF03707 Bacterial signalling protein N terminal repeat VP_RS11870 PF01136 Peptidase family U32 VP_RS11875 PF01136 Peptidase family U32 VP_RS11880 PF01554 MatE VP_RS11890 PF13181 Tetratricopeptide repeat VP_RS11890 PF07719 Tetratricopeptide repeat VP_RS11895 PF00013 KH domain VP_RS11895 PF01138 3' exoribonuclease family, domain 1 VP_RS11895 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VP_RS11895 PF03725 3' exoribonuclease family, domain 2 VP_RS11895 PF00575 S1 RNA binding domain VP_RS11900 PF00312 Ribosomal protein S15 VP_RS11905 PF16198 tRNA pseudouridylate synthase B C-terminal domain VP_RS11905 PF01509 TruB family pseudouridylate synthase (N terminal domain) VP_RS11905 PF09157 Pseudouridine synthase II TruB, C-terminal VP_RS11910 PF02033 Ribosome-binding factor A VP_RS11915 PF00009 Elongation factor Tu GTP binding domain VP_RS11915 PF11987 Translation-initiation factor 2 VP_RS11915 PF08364 Bacterial translation initiation factor IF-2 associated region VP_RS11915 PF04760 Translation initiation factor IF-2, N-terminal region VP_RS11920 PF08529 NusA N-terminal domain VP_RS11920 PF00575 S1 RNA binding domain VP_RS11920 PF13184 NusA-like KH domain VP_RS11925 PF17384 RimP C-terminal SH3 domain VP_RS11925 PF02576 RimP N-terminal domain VP_RS11940 PF03840 Preprotein translocase SecG subunit VP_RS11945 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VP_RS11945 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VP_RS11945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VP_RS11945 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VP_RS11950 PF00809 Pterin binding enzyme VP_RS11955 PF01434 Peptidase family M41 VP_RS11955 PF06480 FtsH Extracellular VP_RS11955 PF00004 ATPase family associated with various cellular activities (AAA) VP_RS11955 PF17862 AAA+ lid domain VP_RS11960 PF01728 FtsJ-like methyltransferase VP_RS11965 PF01985 CRS1 / YhbY (CRM) domain VP_RS11970 PF03449 Transcription elongation factor, N-terminal VP_RS11970 PF01272 Transcription elongation factor, GreA/GreB, C-term VP_RS11975 PF13609 Gram-negative porin VP_RS11980 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VP_RS11990 PF00579 tRNA synthetases class I (W and Y) VP_RS11995 PF01551 Peptidase family M23 VP_RS11995 PF01476 LysM domain VP_RS11995 PF08525 Opacity-associated protein A N-terminal motif VP_RS12000 PF00873 AcrB/AcrD/AcrF family VP_RS12010 PF01521 Iron-sulphur cluster biosynthesis VP_RS12015 PF00202 Aminotransferase class-III VP_RS12020 PF01594 AI-2E family transporter VP_RS12025 PF05175 Methyltransferase small domain VP_RS12025 PF08468 Methyltransferase small domain N-terminal VP_RS12030 PF00512 His Kinase A (phospho-acceptor) domain VP_RS12030 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP_RS12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS12030 PF00072 Response regulator receiver domain VP_RS12035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP_RS12040 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS12045 PF12911 N-terminal TM domain of oligopeptide transport permease C VP_RS12045 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS12050 PF00005 ABC transporter VP_RS12050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP_RS12055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP_RS12055 PF00005 ABC transporter VP_RS12065 PF01869 BadF/BadG/BcrA/BcrD ATPase family VP_RS12070 PF00728 Glycosyl hydrolase family 20, catalytic domain VP_RS12070 PF02838 Glycosyl hydrolase family 20, domain 2 VP_RS12075 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VP_RS12075 PF06165 Glycosyltransferase family 36 VP_RS12080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VP_RS12080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VP_RS12080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VP_RS12080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VP_RS12085 PF08402 TOBE domain VP_RS12085 PF00005 ABC transporter VP_RS12095 PF13416 Bacterial extracellular solute-binding protein VP_RS12100 PF00909 Ammonium Transporter Family VP_RS12105 PF00543 Nitrogen regulatory protein P-II VP_RS12110 PF06062 Uncharacterised protein family (UPF0231) VP_RS12115 PF11791 Aconitate B N-terminal domain VP_RS12115 PF00330 Aconitase family (aconitate hydratase) VP_RS12115 PF06434 Aconitate hydratase 2 N-terminus VP_RS12120 PF01734 Patatin-like phospholipase VP_RS12125 PF00912 Transglycosylase VP_RS12125 PF00905 Penicillin binding protein transpeptidase domain VP_RS12125 PF14814 Bifunctional transglycosylase second domain VP_RS12130 PF00270 DEAD/DEAH box helicase VP_RS12130 PF04408 Helicase associated domain (HA2) VP_RS12130 PF08482 ATP-dependent helicase C-terminal VP_RS12130 PF00271 Helicase conserved C-terminal domain VP_RS12135 PF17746 SfsA N-terminal OB domain VP_RS12135 PF03749 Sugar fermentation stimulation protein RE domain VP_RS12140 PF01258 Prokaryotic dksA/traR C4-type zinc finger VP_RS12145 PF00749 tRNA synthetases class I (E and Q), catalytic domain VP_RS12150 PF01743 Poly A polymerase head domain VP_RS12150 PF12626 Polymerase A arginine-rich C-terminus VP_RS12150 PF12627 Probable RNA and SrmB- binding site of polymerase A VP_RS12155 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VP_RS12160 PF02548 Ketopantoate hydroxymethyltransferase VP_RS12165 PF02569 Pantoate-beta-alanine ligase VP_RS12170 PF03279 Bacterial lipid A biosynthesis acyltransferase VP_RS12175 PF01061 ABC-2 type transporter VP_RS12180 PF00005 ABC transporter VP_RS12185 PF00916 Sulfate permease family VP_RS12185 PF01740 STAS domain VP_RS12190 PF00484 Carbonic anhydrase VP_RS12195 PF00156 Phosphoribosyl transferase domain VP_RS12200 PF00440 Bacterial regulatory proteins, tetR family VP_RS12205 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS12205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VP_RS12210 PF02817 e3 binding domain VP_RS12210 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VP_RS12210 PF00364 Biotin-requiring enzyme VP_RS12215 PF17831 Pyruvate dehydrogenase E1 component middle domain VP_RS12215 PF00456 Transketolase, thiamine diphosphate binding domain VP_RS12220 PF07729 FCD domain VP_RS12220 PF00392 Bacterial regulatory proteins, gntR family VP_RS12225 PF01510 N-acetylmuramoyl-L-alanine amidase VP_RS12230 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VP_RS12230 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VP_RS12240 PF00437 Type II/IV secretion system protein VP_RS12240 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VP_RS12245 PF00482 Type II secretion system (T2SS), protein F VP_RS12250 PF06750 Bacterial Peptidase A24 N-terminal domain VP_RS12250 PF01478 Type IV leader peptidase family VP_RS12255 PF01121 Dephospho-CoA kinase VP_RS12260 PF07072 Cell division protein VP_RS12265 PF03884 DNA gyrase inhibitor YacG VP_RS12270 PF01245 Ribosomal protein L19 VP_RS12275 PF01746 tRNA (Guanine-1)-methyltransferase VP_RS12280 PF01782 RimM N-terminal domain VP_RS12280 PF05239 PRC-barrel domain VP_RS12285 PF00886 Ribosomal protein S16 VP_RS12290 PF00448 SRP54-type protein, GTPase domain VP_RS12290 PF02978 Signal peptide binding domain VP_RS12290 PF02881 SRP54-type protein, helical bundle domain VP_RS12295 PF01578 Cytochrome C assembly protein VP_RS12300 PF01595 Cyclin M transmembrane N-terminal domain VP_RS12300 PF03471 Transporter associated domain VP_RS12300 PF00571 CBS domain VP_RS12305 PF02664 S-Ribosylhomocysteinase (LuxS) VP_RS12315 PF04262 Glutamate-cysteine ligase VP_RS12320 PF00675 Insulinase (Peptidase family M16) VP_RS12320 PF05193 Peptidase M16 inactive domain VP_RS12325 PF09335 SNARE associated Golgi protein VP_RS12330 PF08240 Alcohol dehydrogenase GroES-like domain VP_RS12330 PF00107 Zinc-binding dehydrogenase VP_RS12335 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VP_RS12340 PF02436 Conserved carboxylase domain VP_RS12340 PF00682 HMGL-like VP_RS12340 PF00364 Biotin-requiring enzyme VP_RS12345 PF04277 Oxaloacetate decarboxylase, gamma chain VP_RS12395 PF02599 Global regulator protein family VP_RS12400 PF13840 ACT domain VP_RS12400 PF00696 Amino acid kinase family VP_RS12400 PF01842 ACT domain VP_RS12405 PF01411 tRNA synthetases class II (A) VP_RS12405 PF02272 DHHA1 domain VP_RS12405 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VP_RS12410 PF02631 RecX family VP_RS12415 PF00154 recA bacterial DNA recombination protein VP_RS12420 PF02464 Competence-damaged protein VP_RS12425 PF00488 MutS domain V VP_RS12425 PF05188 MutS domain II VP_RS12425 PF01624 MutS domain I VP_RS12425 PF05190 MutS family domain IV VP_RS12425 PF05192 MutS domain III VP_RS12435 PF01551 Peptidase family M23 VP_RS12435 PF01476 LysM domain VP_RS12445 PF01975 Survival protein SurE VP_RS12450 PF01142 tRNA pseudouridine synthase D (TruD) VP_RS12455 PF02542 YgbB family VP_RS12460 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VP_RS12465 PF04977 Septum formation initiator VP_RS12470 PF03952 Enolase, N-terminal domain VP_RS12470 PF00113 Enolase, C-terminal TIM barrel domain VP_RS12475 PF06418 CTP synthase N-terminus VP_RS12475 PF00117 Glutamine amidotransferase class-I VP_RS12480 PF03819 MazG nucleotide pyrophosphohydrolase domain VP_RS12485 PF02824 TGS domain VP_RS12485 PF04607 Region found in RelA / SpoT proteins VP_RS12485 PF13291 ACT domain VP_RS12490 PF05958 tRNA (Uracil-5-)-methyltransferase VP_RS12490 PF01938 TRAM domain VP_RS12495 PF00512 His Kinase A (phospho-acceptor) domain VP_RS12495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS12495 PF01627 Hpt domain VP_RS12495 PF00072 Response regulator receiver domain VP_RS12495 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VP_RS12495 PF00672 HAMP domain VP_RS12500 PF01648 4'-phosphopantetheinyl transferase superfamily VP_RS12505 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VP_RS12510 PF11967 Recombination protein O N terminal VP_RS12510 PF02565 Recombination protein O C terminal VP_RS12515 PF01926 50S ribosome-binding GTPase VP_RS12515 PF07650 KH domain VP_RS12520 PF14622 Ribonuclease-III-like VP_RS12520 PF00035 Double-stranded RNA binding motif VP_RS12525 PF10502 Signal peptidase, peptidase S26 VP_RS12530 PF06421 GTP-binding protein LepA C-terminus VP_RS12530 PF03144 Elongation factor Tu domain 2 VP_RS12530 PF00679 Elongation factor G C-terminus VP_RS12530 PF00009 Elongation factor Tu GTP binding domain VP_RS12540 PF17188 MucB/RseB C-terminal domain VP_RS12540 PF03888 MucB/RseB N-terminal domain VP_RS12545 PF03873 Anti sigma-E protein RseA, C-terminal domain VP_RS12545 PF03872 Anti sigma-E protein RseA, N-terminal domain VP_RS12550 PF04542 Sigma-70 region 2 VP_RS12550 PF08281 Sigma-70, region 4 VP_RS12555 PF02910 Fumarate reductase flavoprotein C-term VP_RS12555 PF00890 FAD binding domain VP_RS12560 PF03937 Flavinator of succinate dehydrogenase VP_RS12565 PF01571 Aminomethyltransferase folate-binding domain VP_RS12580 PF01494 FAD binding domain VP_RS12585 PF01494 FAD binding domain VP_RS12590 PF03695 Uncharacterised protein family (UPF0149) VP_RS12595 PF05164 Cell division protein ZapA VP_RS12605 PF01812 5-formyltetrahydrofolate cyclo-ligase family VP_RS12610 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VP_RS12615 PF01842 ACT domain VP_RS12615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VP_RS12615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VP_RS12620 PF04402 Protein of unknown function (DUF541) VP_RS12625 PF03466 LysR substrate binding domain VP_RS12625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS12630 PF01810 LysE type translocator VP_RS12635 PF04073 Aminoacyl-tRNA editing domain VP_RS12640 PF00924 Mechanosensitive ion channel VP_RS12640 PF05552 Conserved TM helix VP_RS12645 PF01116 Fructose-bisphosphate aldolase class-II VP_RS12650 PF00162 Phosphoglycerate kinase VP_RS12655 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VP_RS12655 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VP_RS12660 PF00593 TonB dependent receptor VP_RS12660 PF07715 TonB-dependent Receptor Plug Domain VP_RS12665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS12665 PF03466 LysR substrate binding domain VP_RS12670 PF02779 Transketolase, pyrimidine binding domain VP_RS12670 PF00456 Transketolase, thiamine diphosphate binding domain VP_RS12670 PF02780 Transketolase, C-terminal domain VP_RS12675 PF00438 S-adenosylmethionine synthetase, N-terminal domain VP_RS12675 PF02772 S-adenosylmethionine synthetase, central domain VP_RS12675 PF02773 S-adenosylmethionine synthetase, C-terminal domain VP_RS12685 PF17283 SprT-like zinc ribbon domain VP_RS12685 PF10263 SprT-like family VP_RS12690 PF04231 Endonuclease I VP_RS12695 PF04452 RNA methyltransferase VP_RS12700 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VP_RS12700 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VP_RS12705 PF02622 Uncharacterized ACR, COG1678 VP_RS12710 PF03652 Holliday junction resolvase VP_RS12715 PF00437 Type II/IV secretion system protein VP_RS12720 PF00437 Type II/IV secretion system protein VP_RS12725 PF01168 Alanine racemase, N-terminal domain VP_RS12730 PF03807 NADP oxidoreductase coenzyme F420-dependent VP_RS12730 PF14748 Pyrroline-5-carboxylate reductase dimerisation VP_RS12735 PF02325 YGGT family VP_RS12740 PF02594 Uncharacterised ACR, YggU family COG1872 VP_RS12750 PF01725 Ham1 family VP_RS12755 PF06969 HemN C-terminal domain VP_RS12755 PF04055 Radical SAM superfamily VP_RS12760 PF04960 Glutaminase VP_RS12765 PF02086 D12 class N6 adenine-specific DNA methyltransferase VP_RS12770 PF02390 Putative methyltransferase VP_RS12775 PF00730 HhH-GPD superfamily base excision DNA repair protein VP_RS12775 PF14815 NUDIX domain VP_RS12775 PF00633 Helix-hairpin-helix motif VP_RS12780 PF04362 Bacterial Fe(2+) trafficking VP_RS12785 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VP_RS12785 PF01464 Transglycosylase SLT domain VP_RS12825 PF00672 HAMP domain VP_RS12825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS12825 PF17200 Single Cache domain 2 VP_RS12855 PF00171 Aldehyde dehydrogenase family VP_RS12900 PF00072 Response regulator receiver domain VP_RS12905 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VP_RS12905 PF00356 Bacterial regulatory proteins, lacI family VP_RS12910 PF04794 YdjC-like protein VP_RS12915 PF11975 Family 4 glycosyl hydrolase C-terminal domain VP_RS12915 PF02056 Family 4 glycosyl hydrolase VP_RS12920 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VP_RS12925 PF02378 Phosphotransferase system, EIIC VP_RS12930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VP_RS12935 PF01522 Polysaccharide deacetylase VP_RS12945 PF00106 short chain dehydrogenase VP_RS12950 PF10011 Predicted membrane protein (DUF2254) VP_RS12960 PF03739 Lipopolysaccharide export system permease LptF/LptG VP_RS12965 PF03739 Lipopolysaccharide export system permease LptF/LptG VP_RS12970 PF02789 Cytosol aminopeptidase family, N-terminal domain VP_RS12970 PF00883 Cytosol aminopeptidase family, catalytic domain VP_RS12975 PF04364 DNA polymerase III chi subunit, HolC VP_RS12980 PF08264 Anticodon-binding domain of tRNA VP_RS12980 PF10458 Valyl tRNA synthetase tRNA binding arm VP_RS12980 PF00133 tRNA synthetases class I (I, L, M and V) VP_RS12990 PF00583 Acetyltransferase (GNAT) family VP_RS13000 PF06877 Regulator of ribonuclease activity B VP_RS13010 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VP_RS13010 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VP_RS13020 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VP_RS13020 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VP_RS13025 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VP_RS13025 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VP_RS13030 PF01042 Endoribonuclease L-PSP VP_RS13035 PF01553 Acyltransferase VP_RS13040 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VP_RS13045 PF01722 BolA-like protein VP_RS13055 PF05494 MlaC protein VP_RS13060 PF02470 MlaD protein VP_RS13065 PF02405 Permease MlaE VP_RS13070 PF00005 ABC transporter VP_RS13075 PF01699 Sodium/calcium exchanger protein VP_RS13080 PF01380 SIS domain VP_RS13080 PF00571 CBS domain VP_RS13090 PF03968 OstA-like protein VP_RS13095 PF12399 Branched-chain amino acid ATP-binding cassette transporter VP_RS13095 PF00005 ABC transporter VP_RS13100 PF04552 Sigma-54, DNA binding domain VP_RS13100 PF00309 Sigma-54 factor, Activator interacting domain (AID) VP_RS13100 PF04963 Sigma-54 factor, core binding domain VP_RS13105 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VP_RS13110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VP_RS13115 PF03668 P-loop ATPase protein family VP_RS13120 PF00381 PTS HPr component phosphorylation site VP_RS13125 PF03448 MgtE intracellular N domain VP_RS13125 PF00571 CBS domain VP_RS13125 PF01769 Divalent cation transporter VP_RS13130 PF01523 Putative modulator of DNA gyrase VP_RS13135 PF04751 Protein of unknown function (DUF615) VP_RS13140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VP_RS13140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VP_RS13145 PF00849 RNA pseudouridylate synthase VP_RS13155 PF18337 RapA N-terminal Tudor like domain VP_RS13155 PF18339 RapA N-terminal Tudor like domain 1 VP_RS13155 PF00176 SNF2 family N-terminal domain VP_RS13155 PF12137 RNA polymerase recycling family C-terminal VP_RS13155 PF00271 Helicase conserved C-terminal domain VP_RS13160 PF13638 PIN domain VP_RS13160 PF02562 PhoH-like protein VP_RS13165 PF01523 Putative modulator of DNA gyrase VP_RS13170 PF00795 Carbon-nitrogen hydrolase VP_RS13175 PF13116 Protein of unknown function VP_RS13175 PF13502 AsmA-like C-terminal region VP_RS13180 PF00575 S1 RNA binding domain VP_RS13180 PF10150 Ribonuclease E/G family VP_RS13185 PF02545 Maf-like protein VP_RS13190 PF04093 rod shape-determining protein MreD VP_RS13195 PF04085 rod shape-determining protein MreC VP_RS13235 PF00114 Pilin (bacterial filament) VP_RS13235 PF07963 Prokaryotic N-terminal methylation motif VP_RS13245 PF00482 Type II secretion system (T2SS), protein F VP_RS13250 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VP_RS13250 PF00437 Type II/IV secretion system protein VP_RS13260 PF01471 Putative peptidoglycan binding domain VP_RS13260 PF13401 AAA domain VP_RS13265 PF07660 Secretin and TonB N terminus short domain VP_RS13265 PF00263 Bacterial type II and III secretion system protein VP_RS13265 PF03958 Bacterial type II/III secretion system short domain VP_RS13265 PF11741 AMIN domain VP_RS13285 PF00563 EAL domain VP_RS13285 PF17157 Gammaproteobacterial periplasmic sensor domain VP_RS13285 PF00990 Diguanylate cyclase, GGDEF domain VP_RS13290 PF00436 Single-strand binding protein family VP_RS13295 PF00196 Bacterial regulatory proteins, luxR family VP_RS13300 PF00483 Nucleotidyl transferase VP_RS13305 PF17760 UvrA interaction domain VP_RS13305 PF00005 ABC transporter VP_RS13305 PF17755 UvrA DNA-binding domain VP_RS13315 PF00266 Aminotransferase class-V VP_RS13320 PF00696 Amino acid kinase family VP_RS13320 PF01842 ACT domain VP_RS13325 PF02574 Homocysteine S-methyltransferase VP_RS13325 PF02310 B12 binding domain VP_RS13325 PF02607 B12 binding domain VP_RS13325 PF02965 Vitamin B12 dependent methionine synthase, activation domain VP_RS13325 PF00809 Pterin binding enzyme VP_RS13330 PF00999 Sodium/hydrogen exchanger family VP_RS13365 PF01507 Phosphoadenosine phosphosulfate reductase family VP_RS13370 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VP_RS13370 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VP_RS13375 PF00175 Oxidoreductase NAD-binding domain VP_RS13375 PF00667 FAD binding domain VP_RS13375 PF00258 Flavodoxin VP_RS13395 PF01207 Dihydrouridine synthase (Dus) VP_RS13400 PF01475 Ferric uptake regulator family VP_RS13410 PF00342 Phosphoglucose isomerase VP_RS13415 PF01894 Uncharacterised protein family UPF0047 VP_RS13430 PF00772 DnaB-like helicase N terminal domain VP_RS13430 PF03796 DnaB-like helicase C terminal domain VP_RS13440 PF01281 Ribosomal protein L9, N-terminal domain VP_RS13440 PF03948 Ribosomal protein L9, C-terminal domain VP_RS13445 PF01084 Ribosomal protein S18 VP_RS13450 PF00436 Single-strand binding protein family VP_RS13455 PF01250 Ribosomal protein S6 VP_RS13460 PF00834 Ribulose-phosphate 3 epimerase family VP_RS13465 PF02086 D12 class N6 adenine-specific DNA methyltransferase VP_RS13475 PF01761 3-dehydroquinate synthase VP_RS13480 PF01202 Shikimate kinase VP_RS13485 PF03958 Bacterial type II/III secretion system short domain VP_RS13485 PF11741 AMIN domain VP_RS13485 PF00263 Bacterial type II and III secretion system protein VP_RS13485 PF07660 Secretin and TonB N terminus short domain VP_RS13510 PF00912 Transglycosylase VP_RS13510 PF00905 Penicillin binding protein transpeptidase domain VP_RS13510 PF17092 Penicillin-binding protein OB-like domain VP_RS13515 PF03466 LysR substrate binding domain VP_RS13515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS13520 PF08534 Redoxin VP_RS13520 PF00462 Glutaredoxin VP_RS13530 PF00583 Acetyltransferase (GNAT) family VP_RS13530 PF14698 Argininosuccinate lyase C-terminal VP_RS13530 PF00206 Lyase VP_RS13535 PF00764 Arginosuccinate synthase VP_RS13540 PF00696 Amino acid kinase family VP_RS13545 PF01118 Semialdehyde dehydrogenase, NAD binding domain VP_RS13545 PF02774 Semialdehyde dehydrogenase, dimerisation domain VP_RS13550 PF01546 Peptidase family M20/M25/M40 VP_RS13550 PF07687 Peptidase dimerisation domain VP_RS13555 PF00311 Phosphoenolpyruvate carboxylase VP_RS13565 PF02219 Methylenetetrahydrofolate reductase VP_RS13570 PF00742 Homoserine dehydrogenase VP_RS13570 PF03447 Homoserine dehydrogenase, NAD binding domain VP_RS13570 PF00696 Amino acid kinase family VP_RS13575 PF01053 Cys/Met metabolism PLP-dependent enzyme VP_RS13580 PF01340 Met Apo-repressor, MetJ VP_RS13585 PF00390 Malic enzyme, N-terminal domain VP_RS13585 PF03949 Malic enzyme, NAD binding domain VP_RS13590 PF00210 Ferritin-like domain VP_RS13595 PF04324 BFD-like [2Fe-2S] binding domain VP_RS13600 PF03144 Elongation factor Tu domain 2 VP_RS13600 PF03143 Elongation factor Tu C-terminal domain VP_RS13600 PF00009 Elongation factor Tu GTP binding domain VP_RS13605 PF14492 Elongation Factor G, domain II VP_RS13605 PF00009 Elongation factor Tu GTP binding domain VP_RS13605 PF03144 Elongation factor Tu domain 2 VP_RS13605 PF03764 Elongation factor G, domain IV VP_RS13605 PF00679 Elongation factor G C-terminus VP_RS13610 PF00177 Ribosomal protein S7p/S5e VP_RS13615 PF00164 Ribosomal protein S12/S23 VP_RS13620 PF04077 DsrH like protein VP_RS13625 PF02635 DsrE/DsrF-like family VP_RS13630 PF02635 DsrE/DsrF-like family VP_RS13635 PF13309 HTH domain VP_RS13635 PF08348 YheO-like PAS domain VP_RS13640 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VP_RS13640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VP_RS13650 PF04102 SlyX VP_RS13655 PF01112 Asparaginase VP_RS13660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VP_RS13670 PF02254 TrkA-N domain VP_RS13670 PF00999 Sodium/hydrogen exchanger family VP_RS13675 PF02525 Flavodoxin-like fold VP_RS13680 PF00005 ABC transporter VP_RS13680 PF12848 ABC transporter VP_RS13690 PF00561 alpha/beta hydrolase fold VP_RS13695 PF06794 Uncharacterised protein family (UPF0270) VP_RS13700 PF00485 Phosphoribulokinase / Uridine kinase family VP_RS13705 PF00027 Cyclic nucleotide-binding domain VP_RS13705 PF13545 Crp-like helix-turn-helix domain VP_RS13715 PF00171 Aldehyde dehydrogenase family VP_RS13720 PF04958 Arginine N-succinyltransferase beta subunit VP_RS13725 PF00202 Aminotransferase class-III VP_RS13730 PF00117 Glutamine amidotransferase class-I VP_RS13745 PF00579 tRNA synthetases class I (W and Y) VP_RS13750 PF13419 Haloacid dehalogenase-like hydrolase VP_RS13755 PF08032 RNA 2'-O ribose methyltransferase substrate binding VP_RS13755 PF00588 SpoU rRNA Methylase family VP_RS13760 PF00575 S1 RNA binding domain VP_RS13760 PF17876 Cold shock domain VP_RS13760 PF08206 Ribonuclease B OB domain VP_RS13760 PF00773 RNB domain VP_RS13760 PF08461 Ribonuclease R winged-helix domain VP_RS13765 PF02082 Transcriptional regulator VP_RS13770 PF00042 Globin VP_RS13770 PF00970 Oxidoreductase FAD-binding domain VP_RS13770 PF00175 Oxidoreductase NAD-binding domain VP_RS13775 PF08238 Sel1 repeat VP_RS13780 PF00709 Adenylosuccinate synthetase VP_RS13785 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VP_RS13790 PF01145 SPFH domain / Band 7 family VP_RS13795 PF01145 SPFH domain / Band 7 family VP_RS13795 PF12221 Bacterial membrane protein N terminal VP_RS13800 PF16360 GTP-binding GTPase Middle Region VP_RS13800 PF01926 50S ribosome-binding GTPase VP_RS13800 PF13167 GTP-binding GTPase N-terminal VP_RS13805 PF17209 Hfq protein VP_RS13815 PF08676 MutL C terminal dimerisation domain VP_RS13815 PF01119 DNA mismatch repair protein, C-terminal domain VP_RS13820 PF01520 N-acetylmuramoyl-L-alanine amidase VP_RS13825 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VP_RS13830 PF08331 Domain of unknown function (DUF1730) VP_RS13900 PF00929 Exonuclease VP_RS13905 PF03193 RsgA GTPase VP_RS13910 PF02666 Phosphatidylserine decarboxylase VP_RS13915 PF00939 Sodium:sulfate symporter transmembrane region VP_RS13920 PF00672 HAMP domain VP_RS13920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS13930 PF01676 Metalloenzyme superfamily VP_RS13930 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VP_RS13935 PF00581 Rhodanese-like domain VP_RS13940 PF02556 Preprotein translocase subunit SecB VP_RS13945 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VP_RS13945 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VP_RS13950 PF06426 Serine acetyltransferase, N-terminal VP_RS13950 PF00132 Bacterial transferase hexapeptide (six repeats) VP_RS13955 PF01551 Peptidase family M23 VP_RS13965 PF00440 Bacterial regulatory proteins, tetR family VP_RS13965 PF08360 QacR-like protein, C-terminal region VP_RS13975 PF00152 tRNA synthetases class II (D, K and N) VP_RS13980 PF00890 FAD binding domain VP_RS13980 PF02910 Fumarate reductase flavoprotein C-term VP_RS13985 PF13183 4Fe-4S dicluster domain VP_RS13985 PF13085 2Fe-2S iron-sulfur cluster binding domain VP_RS13990 PF02300 Fumarate reductase subunit C VP_RS13995 PF02313 Fumarate reductase subunit D VP_RS14005 PF08207 Elongation factor P (EF-P) KOW-like domain VP_RS14005 PF09285 Elongation factor P, C-terminal VP_RS14005 PF01132 Elongation factor P (EF-P) OB domain VP_RS14010 PF04055 Radical SAM superfamily VP_RS14015 PF00842 Alanine racemase, C-terminal domain VP_RS14015 PF01168 Alanine racemase, N-terminal domain VP_RS14020 PF02308 MgtC family VP_RS14030 PF00118 TCP-1/cpn60 chaperonin family VP_RS14035 PF00166 Chaperonin 10 Kd subunit VP_RS14040 PF01554 MatE VP_RS14045 PF00365 Phosphofructokinase VP_RS14050 PF16916 Dimerisation domain of Zinc Transporter VP_RS14050 PF01545 Cation efflux family VP_RS14055 PF07813 LTXXQ motif family protein VP_RS14060 PF00486 Transcriptional regulatory protein, C terminal VP_RS14060 PF00072 Response regulator receiver domain VP_RS14065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS14065 PF00672 HAMP domain VP_RS14065 PF16527 Two-component sensor protein CpxA, periplasmic domain VP_RS14065 PF00512 His Kinase A (phospho-acceptor) domain VP_RS14070 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VP_RS14070 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VP_RS14075 PF00588 SpoU rRNA Methylase family VP_RS14080 PF04186 FxsA cytoplasmic membrane protein VP_RS14085 PF00206 Lyase VP_RS14085 PF10415 Fumarase C C-terminus VP_RS14090 PF03605 Anaerobic c4-dicarboxylate membrane transporter VP_RS14095 PF11412 Disulphide bond corrector protein DsbC VP_RS14095 PF02683 Cytochrome C biogenesis protein transmembrane region VP_RS14100 PF00196 Bacterial regulatory proteins, luxR family VP_RS14100 PF00072 Response regulator receiver domain VP_RS14105 PF00999 Sodium/hydrogen exchanger family VP_RS14105 PF03471 Transporter associated domain VP_RS14105 PF02080 TrkA-C domain VP_RS14115 PF00474 Sodium:solute symporter family VP_RS14130 PF00206 Lyase VP_RS14130 PF10415 Fumarase C C-terminus VP_RS14135 PF00512 His Kinase A (phospho-acceptor) domain VP_RS14135 PF09308 LuxQ, periplasmic VP_RS14135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS14135 PF00072 Response regulator receiver domain VP_RS14140 PF12832 MFS_1 like family VP_RS14155 PF16177 Acetyl-coenzyme A synthetase N-terminus VP_RS14155 PF00501 AMP-binding enzyme VP_RS14155 PF13193 AMP-binding enzyme C-terminal domain VP_RS14160 PF01220 Dehydroquinase class II VP_RS14165 PF00364 Biotin-requiring enzyme VP_RS14170 PF02785 Biotin carboxylase C-terminal domain VP_RS14170 PF00289 Biotin carboxylase, N-terminal domain VP_RS14170 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VP_RS14180 PF01207 Dihydrouridine synthase (Dus) VP_RS14185 PF02954 Bacterial regulatory protein, Fis family VP_RS14190 PF07690 Major Facilitator Superfamily VP_RS14195 PF12848 ABC transporter VP_RS14195 PF00005 ABC transporter VP_RS14200 PF00990 Diguanylate cyclase, GGDEF domain VP_RS14200 PF05230 MASE2 domain VP_RS14270 PF01276 Orn/Lys/Arg decarboxylase, major domain VP_RS14270 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VP_RS14270 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VP_RS14275 PF13520 Amino acid permease VP_RS14285 PF18500 CadC C-terminal domain 1 VP_RS14285 PF00486 Transcriptional regulatory protein, C terminal VP_RS14290 PF13411 MerR HTH family regulatory protein VP_RS14295 PF01808 AICARFT/IMPCHase bienzyme VP_RS14295 PF02142 MGS-like domain VP_RS14300 PF02843 Phosphoribosylglycinamide synthetase, C domain VP_RS14300 PF02844 Phosphoribosylglycinamide synthetase, N domain VP_RS14300 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VP_RS14360 PF00216 Bacterial DNA-binding protein VP_RS14365 PF01595 Cyclin M transmembrane N-terminal domain VP_RS14365 PF00571 CBS domain VP_RS14370 PF04222 Protein of unknown function (DUF416) VP_RS14375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VP_RS14380 PF03167 Uracil DNA glycosylase superfamily VP_RS14385 PF01208 Uroporphyrinogen decarboxylase (URO-D) VP_RS14400 PF00293 NUDIX domain VP_RS14400 PF09297 NADH pyrophosphatase zinc ribbon domain VP_RS14405 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VP_RS14410 PF04983 RNA polymerase Rpb1, domain 3 VP_RS14410 PF00623 RNA polymerase Rpb1, domain 2 VP_RS14410 PF05000 RNA polymerase Rpb1, domain 4 VP_RS14410 PF04997 RNA polymerase Rpb1, domain 1 VP_RS14410 PF04998 RNA polymerase Rpb1, domain 5 VP_RS14415 PF04563 RNA polymerase beta subunit VP_RS14415 PF04561 RNA polymerase Rpb2, domain 2 VP_RS14415 PF04560 RNA polymerase Rpb2, domain 7 VP_RS14415 PF00562 RNA polymerase Rpb2, domain 6 VP_RS14415 PF04565 RNA polymerase Rpb2, domain 3 VP_RS14415 PF10385 RNA polymerase beta subunit external 1 domain VP_RS14420 PF16320 Ribosomal protein L7/L12 dimerisation domain VP_RS14420 PF00542 Ribosomal protein L7/L12 C-terminal domain VP_RS14425 PF00466 Ribosomal protein L10 VP_RS14430 PF00687 Ribosomal protein L1p/L10e family VP_RS14435 PF03946 Ribosomal protein L11, N-terminal domain VP_RS14435 PF00298 Ribosomal protein L11, RNA binding domain VP_RS14440 PF00467 KOW motif VP_RS14440 PF02357 Transcription termination factor nusG VP_RS14445 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VP_RS14450 PF00009 Elongation factor Tu GTP binding domain VP_RS14450 PF03144 Elongation factor Tu domain 2 VP_RS14450 PF03143 Elongation factor Tu C-terminal domain VP_RS14475 PF00485 Phosphoribulokinase / Uridine kinase family VP_RS14480 PF02237 Biotin protein ligase C terminal domain VP_RS14480 PF08279 HTH domain VP_RS14480 PF03099 Biotin/lipoate A/B protein ligase family VP_RS14485 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VP_RS14485 PF01565 FAD binding domain VP_RS14495 PF13091 PLD-like domain VP_RS14540 PF01177 Asp/Glu/Hydantoin racemase VP_RS14550 PF07715 TonB-dependent Receptor Plug Domain VP_RS14550 PF00593 TonB dependent receptor VP_RS14555 PF05958 tRNA (Uracil-5-)-methyltransferase VP_RS14565 PF00440 Bacterial regulatory proteins, tetR family VP_RS14570 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS14570 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VP_RS14575 PF01554 MatE VP_RS14580 PF04072 Leucine carboxyl methyltransferase VP_RS14585 PF01726 LexA DNA binding domain VP_RS14585 PF00717 Peptidase S24-like VP_RS14590 PF01553 Acyltransferase VP_RS14595 PF01040 UbiA prenyltransferase family VP_RS14600 PF04345 Chorismate lyase VP_RS14605 PF03748 Flagellar basal body-associated protein FliL VP_RS14610 PF01694 Rhomboid family VP_RS14610 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VP_RS14615 PF00581 Rhodanese-like domain VP_RS14620 PF04542 Sigma-70 region 2 VP_RS14620 PF04545 Sigma-70, region 4 VP_RS14620 PF00140 Sigma-70 factor, region 1.2 VP_RS14625 PF18075 FtsX extracellular domain VP_RS14630 PF00005 ABC transporter VP_RS14635 PF00448 SRP54-type protein, GTPase domain VP_RS14635 PF02881 SRP54-type protein, helical bundle domain VP_RS14650 PF01914 MarC family integral membrane protein VP_RS14700 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VP_RS14700 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VP_RS14705 PF01022 Bacterial regulatory protein, arsR family VP_RS14710 PF00563 EAL domain VP_RS14710 PF08668 HDOD domain VP_RS14715 PF01810 LysE type translocator VP_RS14720 PF12146 Serine aminopeptidase, S33 VP_RS14745 PF00990 Diguanylate cyclase, GGDEF domain VP_RS14745 PF08495 FIST N domain VP_RS14745 PF00563 EAL domain VP_RS14745 PF10442 FIST C domain VP_RS14750 PF13419 Haloacid dehalogenase-like hydrolase VP_RS14755 PF02899 Phage integrase, N-terminal SAM-like domain VP_RS14755 PF00589 Phage integrase family VP_RS14765 PF01678 Diaminopimelate epimerase VP_RS14770 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VP_RS14770 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VP_RS14780 PF01491 Frataxin-like domain VP_RS14785 PF01295 Adenylate cyclase, class-I VP_RS14785 PF12633 Adenylate cyclase NT domain VP_RS14790 PF03900 Porphobilinogen deaminase, C-terminal domain VP_RS14790 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VP_RS14795 PF02602 Uroporphyrinogen-III synthase HemD VP_RS14800 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VP_RS14805 PF07219 HemY protein N-terminus VP_RS14840 PF00175 Oxidoreductase NAD-binding domain VP_RS14845 PF00111 2Fe-2S iron-sulfur cluster binding domain VP_RS14850 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VP_RS14860 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VP_RS14860 PF07497 Rho termination factor, RNA-binding domain VP_RS14860 PF07498 Rho termination factor, N-terminal domain VP_RS14865 PF00085 Thioredoxin VP_RS14870 PF00271 Helicase conserved C-terminal domain VP_RS14870 PF00270 DEAD/DEAH box helicase VP_RS14875 PF02541 Ppx/GppA phosphatase family VP_RS14880 PF02592 Putative vitamin uptake transporter VP_RS14890 PF16124 RecQ zinc-binding VP_RS14890 PF00270 DEAD/DEAH box helicase VP_RS14890 PF00271 Helicase conserved C-terminal domain VP_RS14890 PF00570 HRDC domain VP_RS14890 PF09382 RQC domain VP_RS14895 PF00892 EamA-like transporter family VP_RS14905 PF01810 LysE type translocator VP_RS14915 PF13361 UvrD-like helicase C-terminal domain VP_RS14915 PF00580 UvrD/REP helicase N-terminal domain VP_RS14925 PF05114 Protein of unknown function (DUF692) VP_RS14945 PF07690 Major Facilitator Superfamily VP_RS14950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS14950 PF03466 LysR substrate binding domain VP_RS14955 PF00557 Metallopeptidase family M24 VP_RS14955 PF01321 Creatinase/Prolidase N-terminal domain VP_RS14955 PF01321 Creatinase/Prolidase N-terminal domain VP_RS14955 PF00557 Metallopeptidase family M24 VP_RS14960 PF04055 Radical SAM superfamily VP_RS14960 PF06968 Biotin and Thiamin Synthesis associated domain VP_RS14965 PF05690 Thiazole biosynthesis protein ThiG VP_RS14970 PF02597 ThiS family VP_RS14975 PF00899 ThiF family VP_RS14980 PF02581 Thiamine monophosphate synthase VP_RS14985 PF01964 Radical SAM ThiC family VP_RS14985 PF13667 ThiC-associated domain VP_RS14990 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VP_RS15035 PF00132 Bacterial transferase hexapeptide (six repeats) VP_RS15040 PF07369 Protein of unknown function (DUF1488) VP_RS15045 PF08501 Shikimate dehydrogenase substrate binding domain VP_RS15045 PF01488 Shikimate / quinate 5-dehydrogenase VP_RS15045 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VP_RS15050 PF01218 Coproporphyrinogen III oxidase VP_RS15055 PF01300 Telomere recombination VP_RS15060 PF00731 AIR carboxylase VP_RS15065 PF02222 ATP-grasp domain VP_RS15065 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VP_RS15070 PF01396 Topoisomerase DNA binding C4 zinc finger VP_RS15075 PF04361 Protein of unknown function (DUF494) VP_RS15080 PF02481 DNA recombination-mediator protein A VP_RS15080 PF17782 DprA winged helix domain VP_RS15090 PF01327 Polypeptide deformylase VP_RS15095 PF02911 Formyl transferase, C-terminal domain VP_RS15095 PF00551 Formyl transferase VP_RS15100 PF01029 NusB family VP_RS15100 PF01189 16S rRNA methyltransferase RsmB/F VP_RS15105 PF02254 TrkA-N domain VP_RS15105 PF02080 TrkA-C domain VP_RS15110 PF02386 Cation transport protein VP_RS15120 PF03006 Haemolysin-III related VP_RS15125 PF07070 SpoOM protein VP_RS15130 PF06288 Protein of unknown function (DUF1040) VP_RS15135 PF13746 4Fe-4S dicluster domain VP_RS15135 PF12801 4Fe-4S binding domain VP_RS15135 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VP_RS15140 PF01636 Phosphotransferase enzyme family VP_RS15145 PF01323 DSBA-like thioredoxin domain VP_RS15150 PF01553 Acyltransferase VP_RS15160 PF01078 Magnesium chelatase, subunit ChlI VP_RS15160 PF13335 Magnesium chelatase, subunit ChlI C-terminal VP_RS15165 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VP_RS15165 PF00205 Thiamine pyrophosphate enzyme, central domain VP_RS15165 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VP_RS15175 PF01063 Amino-transferase class IV VP_RS15180 PF00920 Dehydratase family VP_RS15185 PF00585 C-terminal regulatory domain of Threonine dehydratase VP_RS15185 PF00291 Pyridoxal-phosphate dependent enzyme VP_RS15190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS15190 PF03466 LysR substrate binding domain VP_RS15195 PF07690 Major Facilitator Superfamily VP_RS15200 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP_RS15205 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS15210 PF00132 Bacterial transferase hexapeptide (six repeats) VP_RS15210 PF12804 MobA-like NTP transferase domain VP_RS15215 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VP_RS15215 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VP_RS15220 PF02874 ATP synthase alpha/beta family, beta-barrel domain VP_RS15220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VP_RS15225 PF00231 ATP synthase VP_RS15230 PF00306 ATP synthase alpha/beta chain, C terminal domain VP_RS15230 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VP_RS15230 PF02874 ATP synthase alpha/beta family, beta-barrel domain VP_RS15235 PF00213 ATP synthase delta (OSCP) subunit VP_RS15240 PF00430 ATP synthase B/B' CF(0) VP_RS15245 PF00137 ATP synthase subunit C VP_RS15250 PF00119 ATP synthase A chain VP_RS15255 PF03899 ATP synthase I chain VP_RS15260 PF17762 HTH domain found in ParB protein VP_RS15260 PF02195 ParB-like nuclease domain VP_RS15265 PF13614 AAA domain VP_RS15270 PF02527 rRNA small subunit methyltransferase G VP_RS15275 PF13932 GidA associated domain VP_RS15275 PF01134 Glucose inhibited division protein A VP_RS15290 PF00005 ABC transporter VP_RS15290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP_RS15295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP_RS15295 PF00005 ABC transporter VP_RS15305 PF00925 GTP cyclohydrolase II VP_RS15305 PF08719 Domain of unknown function (DUF1768) VP_RS15315 PF01627 Hpt domain VP_RS15315 PF17149 Periplasmic sensor domain found in signal transduction proteins VP_RS15315 PF00672 HAMP domain VP_RS15315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS15315 PF00512 His Kinase A (phospho-acceptor) domain VP_RS15315 PF00072 Response regulator receiver domain VP_RS15325 PF01709 Transcriptional regulator VP_RS15330 PF01098 Cell cycle protein VP_RS15340 PF00005 ABC transporter VP_RS15360 PF06580 Histidine kinase VP_RS15360 PF07694 5TMR of 5TMR-LYT VP_RS15360 PF13492 GAF domain VP_RS15360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS15365 PF00072 Response regulator receiver domain VP_RS15365 PF04397 LytTr DNA-binding domain VP_RS15375 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VP_RS15380 PF00672 HAMP domain VP_RS15380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS15380 PF17200 Single Cache domain 2 VP_RS15395 PF00132 Bacterial transferase hexapeptide (six repeats) VP_RS15400 PF03616 Sodium/glutamate symporter VP_RS15410 PF00005 ABC transporter VP_RS15415 PF00155 Aminotransferase class I and II VP_RS15415 PF00392 Bacterial regulatory proteins, gntR family VP_RS15420 PF03616 Sodium/glutamate symporter VP_RS15430 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VP_RS15445 PF03466 LysR substrate binding domain VP_RS15445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS15450 PF17954 Quercetinase C-terminal cupin domain VP_RS15450 PF02678 Pirin VP_RS15455 PF07681 DoxX VP_RS15465 PF00730 HhH-GPD superfamily base excision DNA repair protein VP_RS15465 PF06029 AlkA N-terminal domain VP_RS15470 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VP_RS15470 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VP_RS15480 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VP_RS15490 PF03600 Citrate transporter VP_RS15510 PF00704 Glycosyl hydrolases family 18 VP_RS15510 PF08329 Chitinase A, N-terminal domain VP_RS15520 PF06865 Pyrimidine/purine nucleoside phosphorylase VP_RS15530 PF00990 Diguanylate cyclase, GGDEF domain VP_RS15530 PF00563 EAL domain VP_RS15535 PF01554 MatE VP_RS15540 PF00849 RNA pseudouridylate synthase VP_RS15555 PF03466 LysR substrate binding domain VP_RS15555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS15570 PF00990 Diguanylate cyclase, GGDEF domain VP_RS15570 PF17152 Periplasmic sensor domain VP_RS15580 PF00756 Putative esterase VP_RS15585 PF00107 Zinc-binding dehydrogenase VP_RS15585 PF08240 Alcohol dehydrogenase GroES-like domain VP_RS15590 PF00797 N-acetyltransferase VP_RS15595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS15595 PF03466 LysR substrate binding domain VP_RS15610 PF01614 Bacterial transcriptional regulator VP_RS15610 PF09339 IclR helix-turn-helix domain VP_RS15620 PF10688 Bacterial inner membrane protein VP_RS15625 PF07883 Cupin domain VP_RS15640 PF00294 pfkB family carbohydrate kinase VP_RS15645 PF01081 KDPG and KHG aldolase VP_RS15660 PF13229 Right handed beta helix region VP_RS15665 PF00474 Sodium:solute symporter family VP_RS15670 PF14583 Oligogalacturonate lyase VP_RS15675 PF08021 Siderophore-interacting FAD-binding domain VP_RS15675 PF04954 Siderophore-interacting protein VP_RS15680 PF01810 LysE type translocator VP_RS15685 PF01037 Lrp/AsnC ligand binding domain VP_RS15690 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VP_RS15690 PF18416 N-acetylglucosamine binding protein domain 2 VP_RS15705 PF13599 Pentapeptide repeats (9 copies) VP_RS15710 PF03922 OmpW family VP_RS15715 PF13533 Biotin-lipoyl like VP_RS15720 PF07690 Major Facilitator Superfamily VP_RS15730 PF12706 Beta-lactamase superfamily domain VP_RS15740 PF01204 Trehalase VP_RS15745 PF01661 Macro domain VP_RS15750 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VP_RS15755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS15755 PF03466 LysR substrate binding domain VP_RS15765 PF03466 LysR substrate binding domain VP_RS15765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS15780 PF13419 Haloacid dehalogenase-like hydrolase VP_RS15800 PF13556 PucR C-terminal helix-turn-helix domain VP_RS15800 PF17853 GGDEF-like domain VP_RS15800 PF05651 Putative sugar diacid recognition VP_RS15805 PF02447 GntP family permease VP_RS15810 PF02595 Glycerate kinase family VP_RS15815 PF00392 Bacterial regulatory proteins, gntR family VP_RS15815 PF00155 Aminotransferase class I and II VP_RS15835 PF00583 Acetyltransferase (GNAT) family VP_RS15860 PF03264 NapC/NirT cytochrome c family, N-terminal region VP_RS15865 PF00384 Molybdopterin oxidoreductase VP_RS15865 PF01568 Molydopterin dinucleotide binding domain VP_RS15865 PF18364 Molybdopterin oxidoreductase N-terminal domain VP_RS15875 PF02581 Thiamine monophosphate synthase VP_RS15880 PF02110 Hydroxyethylthiazole kinase family VP_RS15885 PF03070 TENA/THI-4/PQQC family VP_RS15890 PF09084 NMT1/THI5 like VP_RS15895 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS15900 PF00005 ABC transporter VP_RS15905 PF08543 Phosphomethylpyrimidine kinase VP_RS15910 PF01523 Putative modulator of DNA gyrase VP_RS15915 PF01523 Putative modulator of DNA gyrase VP_RS15920 PF04013 Putative SAM-dependent RNA methyltransferase VP_RS15970 PF10928 Protein of unknown function (DUF2810) VP_RS15975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VP_RS15975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VP_RS15985 PF03009 Glycerophosphoryl diester phosphodiesterase family VP_RS15990 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VP_RS15990 PF00056 lactate/malate dehydrogenase, NAD binding domain VP_RS15995 PF00486 Transcriptional regulatory protein, C terminal VP_RS15995 PF00072 Response regulator receiver domain VP_RS16000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS16000 PF00512 His Kinase A (phospho-acceptor) domain VP_RS16000 PF00672 HAMP domain VP_RS16000 PF16750 Sensor domain of 2-component histidine kinase VP_RS16005 PF07715 TonB-dependent Receptor Plug Domain VP_RS16005 PF00593 TonB dependent receptor VP_RS16015 PF01618 MotA/TolQ/ExbB proton channel family VP_RS16020 PF01618 MotA/TolQ/ExbB proton channel family VP_RS16025 PF02472 Biopolymer transport protein ExbD/TolR VP_RS16065 PF01297 Zinc-uptake complex component A periplasmic VP_RS16070 PF00005 ABC transporter VP_RS16075 PF00950 ABC 3 transport family VP_RS16090 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VP_RS16090 PF00326 Prolyl oligopeptidase family VP_RS16095 PF07690 Major Facilitator Superfamily VP_RS16100 PF00491 Arginase family VP_RS16105 PF17944 Arginine decarboxylase C-terminal helical extension VP_RS16105 PF17810 Arginine decarboxylase helical bundle domain VP_RS16105 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VP_RS16110 PF00753 Metallo-beta-lactamase superfamily VP_RS16115 PF08443 RimK-like ATP-grasp domain VP_RS16115 PF18030 RimK PreATP-grasp domain VP_RS16120 PF08443 RimK-like ATP-grasp domain VP_RS16120 PF18030 RimK PreATP-grasp domain VP_RS16125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS16125 PF03466 LysR substrate binding domain VP_RS16150 PF00232 Glycosyl hydrolase family 1 VP_RS16155 PF02743 Cache domain VP_RS16155 PF00512 His Kinase A (phospho-acceptor) domain VP_RS16155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS16160 PF02954 Bacterial regulatory protein, Fis family VP_RS16160 PF00072 Response regulator receiver domain VP_RS16160 PF00158 Sigma-54 interaction domain VP_RS16165 PF00990 Diguanylate cyclase, GGDEF domain VP_RS16165 PF05230 MASE2 domain VP_RS16170 PF05525 Branched-chain amino acid transport protein VP_RS16185 PF01266 FAD dependent oxidoreductase VP_RS16195 PF01212 Beta-eliminating lyase VP_RS16210 PF01773 Na+ dependent nucleoside transporter N-terminus VP_RS16210 PF07670 Nucleoside recognition VP_RS16210 PF07662 Na+ dependent nucleoside transporter C-terminus VP_RS16220 PF13532 2OG-Fe(II) oxygenase superfamily VP_RS16225 PF00990 Diguanylate cyclase, GGDEF domain VP_RS16225 PF05230 MASE2 domain VP_RS16230 PF12729 Four helix bundle sensory module for signal transduction VP_RS16230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS16230 PF00672 HAMP domain VP_RS16245 PF00990 Diguanylate cyclase, GGDEF domain VP_RS16250 PF03441 FAD binding domain of DNA photolyase VP_RS16250 PF00875 DNA photolyase VP_RS16255 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VP_RS16260 PF04055 Radical SAM superfamily VP_RS16260 PF00919 Uncharacterized protein family UPF0004 VP_RS16270 PF01625 Peptide methionine sulfoxide reductase VP_RS16270 PF01641 SelR domain VP_RS16275 PF02566 OsmC-like protein VP_RS16280 PF14602 Hexapeptide repeat of succinyl-transferase VP_RS16280 PF12464 Maltose acetyltransferase VP_RS16315 PF03466 LysR substrate binding domain VP_RS16315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS16320 PF13419 Haloacid dehalogenase-like hydrolase VP_RS16335 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VP_RS16340 PF00194 Eukaryotic-type carbonic anhydrase VP_RS16345 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VP_RS16350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS16355 PF12704 MacB-like periplasmic core domain VP_RS16355 PF02687 FtsX-like permease family VP_RS16355 PF00005 ABC transporter VP_RS16360 PF02321 Outer membrane efflux protein VP_RS16365 PF00657 GDSL-like Lipase/Acylhydrolase VP_RS16370 PF00082 Subtilase family VP_RS16370 PF05922 Peptidase inhibitor I9 VP_RS16380 PF03611 PTS system sugar-specific permease component VP_RS16390 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VP_RS16395 PF00356 Bacterial regulatory proteins, lacI family VP_RS16400 PF13419 Haloacid dehalogenase-like hydrolase VP_RS16410 PF00266 Aminotransferase class-V VP_RS16425 PF00005 ABC transporter VP_RS16430 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS16435 PF07702 UTRA domain VP_RS16435 PF00392 Bacterial regulatory proteins, gntR family VP_RS16450 PF04393 Protein of unknown function (DUF535) VP_RS16455 PF01266 FAD dependent oxidoreductase VP_RS16460 PF00246 Zinc carboxypeptidase VP_RS16460 PF18027 Cytosolic carboxypeptidase N-terminal domain VP_RS16465 PF00691 OmpA family VP_RS16465 PF01389 OmpA-like transmembrane domain VP_RS16470 PF03466 LysR substrate binding domain VP_RS16470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS16480 PF03466 LysR substrate binding domain VP_RS16480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS16490 PF00854 POT family VP_RS16495 PF03315 Serine dehydratase beta chain VP_RS16495 PF03313 Serine dehydratase alpha chain VP_RS16515 PF00133 tRNA synthetases class I (I, L, M and V) VP_RS16515 PF08264 Anticodon-binding domain of tRNA VP_RS16520 PF01464 Transglycosylase SLT domain VP_RS16540 PF00460 Flagella basal body rod protein VP_RS16545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP_RS16545 PF00460 Flagella basal body rod protein VP_RS16550 PF03963 Flagellar hook capping protein - N-terminal region VP_RS16550 PF13860 FlgD Ig-like domain VP_RS16550 PF13861 FlgD Tudor-like domain VP_RS16555 PF07559 Flagellar basal body protein FlaE VP_RS16555 PF00460 Flagella basal body rod protein VP_RS16555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP_RS16560 PF00460 Flagella basal body rod protein VP_RS16560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP_RS16565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP_RS16565 PF00460 Flagella basal body rod protein VP_RS16570 PF02107 Flagellar L-ring protein VP_RS16575 PF02119 Flagellar P-ring protein VP_RS16580 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VP_RS16580 PF10135 Rod binding protein VP_RS16585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VP_RS16585 PF00460 Flagella basal body rod protein VP_RS16590 PF00669 Bacterial flagellin N-terminal helical region VP_RS16610 PF01070 FMN-dependent dehydrogenase VP_RS16635 PF00581 Rhodanese-like domain VP_RS16640 PF00166 Chaperonin 10 Kd subunit VP_RS16645 PF00118 TCP-1/cpn60 chaperonin family VP_RS16660 PF01810 LysE type translocator VP_RS16665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS16665 PF03466 LysR substrate binding domain VP_RS16680 PF00440 Bacterial regulatory proteins, tetR family VP_RS16680 PF08359 YsiA-like protein, C-terminal region VP_RS16690 PF00149 Calcineurin-like phosphoesterase VP_RS16690 PF02872 5'-nucleotidase, C-terminal domain VP_RS16695 PF03060 Nitronate monooxygenase VP_RS16710 PF03466 LysR substrate binding domain VP_RS16710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS16720 PF01625 Peptide methionine sulfoxide reductase VP_RS16720 PF01641 SelR domain VP_RS16725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VP_RS16730 PF00455 DeoR C terminal sensor domain VP_RS16730 PF08220 DeoR-like helix-turn-helix domain VP_RS16740 PF06628 Catalase-related immune-responsive VP_RS16740 PF00199 Catalase VP_RS16750 PF00857 Isochorismatase family VP_RS16760 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VP_RS16760 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VP_RS16785 PF03466 LysR substrate binding domain VP_RS16785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS16790 PF01389 OmpA-like transmembrane domain VP_RS16790 PF00691 OmpA family VP_RS16800 PF06629 MltA-interacting protein MipA VP_RS16805 PF17185 NlpE C-terminal OB domain VP_RS16805 PF04170 NlpE N-terminal domain VP_RS16810 PF02001 Protein of unknown function DUF134 VP_RS16835 PF14492 Elongation Factor G, domain II VP_RS16835 PF03764 Elongation factor G, domain IV VP_RS16835 PF00679 Elongation factor G C-terminus VP_RS16835 PF03144 Elongation factor Tu domain 2 VP_RS16835 PF00009 Elongation factor Tu GTP binding domain VP_RS16840 PF13378 Enolase C-terminal domain-like VP_RS16840 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VP_RS16850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS16850 PF03466 LysR substrate binding domain VP_RS16860 PF09278 MerR, DNA binding VP_RS16860 PF00376 MerR family regulatory protein VP_RS16885 PF13091 PLD-like domain VP_RS16890 PF13533 Biotin-lipoyl like VP_RS16895 PF00873 AcrB/AcrD/AcrF family VP_RS16920 PF08402 TOBE domain VP_RS16920 PF00005 ABC transporter VP_RS16945 PF07702 UTRA domain VP_RS16945 PF00392 Bacterial regulatory proteins, gntR family VP_RS16950 PF02028 BCCT, betaine/carnitine/choline family transporter VP_RS16955 PF00703 Glycosyl hydrolases family 2 VP_RS16955 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VP_RS16955 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 VP_RS16955 PF02837 Glycosyl hydrolases family 2, sugar binding domain VP_RS16960 PF00196 Bacterial regulatory proteins, luxR family VP_RS16970 PF07694 5TMR of 5TMR-LYT VP_RS16970 PF00990 Diguanylate cyclase, GGDEF domain VP_RS16985 PF00873 AcrB/AcrD/AcrF family VP_RS16990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS16995 PF03466 LysR substrate binding domain VP_RS16995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS17005 PF13416 Bacterial extracellular solute-binding protein VP_RS17010 PF00579 tRNA synthetases class I (W and Y) VP_RS17025 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VP_RS17025 PF02896 PEP-utilising enzyme, TIM barrel domain VP_RS17025 PF00391 PEP-utilising enzyme, mobile domain VP_RS17030 PF03618 Kinase/pyrophosphorylase VP_RS17035 PF00710 Asparaginase, N-terminal VP_RS17035 PF17763 Glutaminase/Asparaginase C-terminal domain VP_RS17045 PF03466 LysR substrate binding domain VP_RS17045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS17060 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VP_RS17065 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VP_RS17065 PF12833 Helix-turn-helix domain VP_RS17080 PF00107 Zinc-binding dehydrogenase VP_RS17080 PF08240 Alcohol dehydrogenase GroES-like domain VP_RS17085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VP_RS17095 PF03466 LysR substrate binding domain VP_RS17095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS17100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS17100 PF03466 LysR substrate binding domain VP_RS17110 PF00270 DEAD/DEAH box helicase VP_RS17110 PF00271 Helicase conserved C-terminal domain VP_RS17125 PF00535 Glycosyl transferase family 2 VP_RS17150 PF00155 Aminotransferase class I and II VP_RS17155 PF12833 Helix-turn-helix domain VP_RS17155 PF01497 Periplasmic binding protein VP_RS17185 PF05661 Protein of unknown function (DUF808) VP_RS17190 PF01979 Amidohydrolase family VP_RS17195 PF01679 Proteolipid membrane potential modulator VP_RS17200 PF00111 2Fe-2S iron-sulfur cluster binding domain VP_RS17200 PF03476 MOSC N-terminal beta barrel domain VP_RS17200 PF03476 MOSC N-terminal beta barrel domain VP_RS17200 PF03473 MOSC domain VP_RS17200 PF00111 2Fe-2S iron-sulfur cluster binding domain VP_RS17200 PF03473 MOSC domain VP_RS17205 PF02540 NAD synthase VP_RS17210 PF01467 Cytidylyltransferase-like VP_RS17250 PF00005 ABC transporter VP_RS17255 PF01032 FecCD transport family VP_RS17265 PF02472 Biopolymer transport protein ExbD/TolR VP_RS17270 PF01618 MotA/TolQ/ExbB proton channel family VP_RS17275 PF03544 Gram-negative bacterial TonB protein C-terminal VP_RS17280 PF04055 Radical SAM superfamily VP_RS17285 PF06228 Haem utilisation ChuX/HutX VP_RS17290 PF01243 Pyridoxamine 5'-phosphate oxidase VP_RS17300 PF00072 Response regulator receiver domain VP_RS17300 PF01584 CheW-like domain VP_RS17310 PF00239 Resolvase, N terminal domain VP_RS17310 PF07508 Recombinase VP_RS17310 PF13408 Recombinase zinc beta ribbon domain VP_RS17320 PF00239 Resolvase, N terminal domain VP_RS17320 PF02796 Helix-turn-helix domain of resolvase VP_RS17335 PF00075 RNase H VP_RS17385 PF00082 Subtilase family VP_RS17405 PF00141 Peroxidase VP_RS17410 PF00210 Ferritin-like domain VP_RS17415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS17415 PF03466 LysR substrate binding domain VP_RS17430 PF04151 Bacterial pre-peptidase C-terminal domain VP_RS17430 PF08453 Peptidase family M9 N-terminal VP_RS17430 PF01752 Collagenase VP_RS17440 PF00128 Alpha amylase, catalytic domain VP_RS17455 PF02254 TrkA-N domain VP_RS17455 PF00999 Sodium/hydrogen exchanger family VP_RS17460 PF02525 Flavodoxin-like fold VP_RS17465 PF00582 Universal stress protein family VP_RS17470 PF12848 ABC transporter VP_RS17470 PF16326 ABC transporter C-terminal domain VP_RS17470 PF00005 ABC transporter VP_RS17475 PF00326 Prolyl oligopeptidase family VP_RS17475 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VP_RS17485 PF13533 Biotin-lipoyl like VP_RS17490 PF00873 AcrB/AcrD/AcrF family VP_RS17495 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VP_RS17505 PF13302 Acetyltransferase (GNAT) domain VP_RS17510 PF00990 Diguanylate cyclase, GGDEF domain VP_RS17510 PF13185 GAF domain VP_RS17535 PF00873 AcrB/AcrD/AcrF family VP_RS17555 PF12838 4Fe-4S dicluster domain VP_RS17555 PF01568 Molydopterin dinucleotide binding domain VP_RS17555 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VP_RS17555 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VP_RS17555 PF00384 Molybdopterin oxidoreductase VP_RS17575 PF00005 ABC transporter VP_RS17585 PF00672 HAMP domain VP_RS17585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS17590 PF10282 Lactonase, 7-bladed beta-propeller VP_RS17595 PF02567 Phenazine biosynthesis-like protein VP_RS17600 PF01161 Phosphatidylethanolamine-binding protein VP_RS17610 PF01758 Sodium Bile acid symporter family VP_RS17625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VP_RS17630 PF02378 Phosphotransferase system, EIIC VP_RS17630 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VP_RS17635 PF00107 Zinc-binding dehydrogenase VP_RS17635 PF08240 Alcohol dehydrogenase GroES-like domain VP_RS17670 PF03222 Tryptophan/tyrosine permease family VP_RS17680 PF02743 Cache domain VP_RS17680 PF00672 HAMP domain VP_RS17680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS17705 PF01551 Peptidase family M23 VP_RS17705 PF08525 Opacity-associated protein A N-terminal motif VP_RS17705 PF01476 LysM domain VP_RS17710 PF00563 EAL domain VP_RS17710 PF08448 PAS fold VP_RS17710 PF00990 Diguanylate cyclase, GGDEF domain VP_RS17710 PF08447 PAS fold VP_RS17715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS17715 PF03466 LysR substrate binding domain VP_RS17720 PF07690 Major Facilitator Superfamily VP_RS17735 PF00892 EamA-like transporter family VP_RS17740 PF00267 Gram-negative porin VP_RS17750 PF01557 Fumarylacetoacetate (FAA) hydrolase family VP_RS17765 PF12833 Helix-turn-helix domain VP_RS17770 PF01810 LysE type translocator VP_RS17780 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VP_RS17780 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VP_RS17780 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VP_RS17780 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VP_RS17785 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VP_RS17785 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VP_RS17790 PF00115 Cytochrome C and Quinol oxidase polypeptide I VP_RS17795 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VP_RS17800 PF00510 Cytochrome c oxidase subunit III VP_RS17820 PF02628 Cytochrome oxidase assembly protein VP_RS17825 PF01040 UbiA prenyltransferase family VP_RS17830 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VP_RS17830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VP_RS17860 PF00313 'Cold-shock' DNA-binding domain VP_RS17865 PF03889 Alternative ribosome-rescue factor A VP_RS17870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS17870 PF13426 PAS domain VP_RS17870 PF08447 PAS fold VP_RS17875 PF00990 Diguanylate cyclase, GGDEF domain VP_RS17890 PF00005 ABC transporter VP_RS17890 PF02687 FtsX-like permease family VP_RS17890 PF12704 MacB-like periplasmic core domain VP_RS17895 PF02687 FtsX-like permease family VP_RS17895 PF00005 ABC transporter VP_RS17895 PF12704 MacB-like periplasmic core domain VP_RS17905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS17905 PF00672 HAMP domain VP_RS17905 PF17200 Single Cache domain 2 VP_RS17910 PF00210 Ferritin-like domain VP_RS17920 PF07995 Glucose / Sorbosone dehydrogenase VP_RS17925 PF00465 Iron-containing alcohol dehydrogenase VP_RS17935 PF00892 EamA-like transporter family VP_RS17960 PF03466 LysR substrate binding domain VP_RS17960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS17970 PF00501 AMP-binding enzyme VP_RS17970 PF13193 AMP-binding enzyme C-terminal domain VP_RS17975 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VP_RS17980 PF01329 Pterin 4 alpha carbinolamine dehydratase VP_RS18000 PF12843 Putative quorum-sensing-regulated virulence factor VP_RS18005 PF00270 DEAD/DEAH box helicase VP_RS18005 PF00271 Helicase conserved C-terminal domain VP_RS18010 PF09905 DNA-binding protein VF530 VP_RS18015 PF00291 Pyridoxal-phosphate dependent enzyme VP_RS18025 PF01470 Pyroglutamyl peptidase VP_RS18035 PF07683 Cobalamin synthesis protein cobW C-terminal domain VP_RS18035 PF02492 CobW/HypB/UreG, nucleotide-binding domain VP_RS18040 PF00271 Helicase conserved C-terminal domain VP_RS18040 PF00270 DEAD/DEAH box helicase VP_RS18060 PF12792 CSS motif domain associated with EAL VP_RS18060 PF00563 EAL domain VP_RS18065 PF00005 ABC transporter VP_RS18070 PF12729 Four helix bundle sensory module for signal transduction VP_RS18070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS18070 PF00672 HAMP domain VP_RS18075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS18075 PF03466 LysR substrate binding domain VP_RS18080 PF00884 Sulfatase VP_RS18085 PF04055 Radical SAM superfamily VP_RS18085 PF13186 Iron-sulfur cluster-binding domain VP_RS18090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS18090 PF03466 LysR substrate binding domain VP_RS18100 PF01575 MaoC like domain VP_RS18105 PF12849 PBP superfamily domain VP_RS18115 PF12833 Helix-turn-helix domain VP_RS18120 PF08206 Ribonuclease B OB domain VP_RS18120 PF00575 S1 RNA binding domain VP_RS18120 PF00773 RNB domain VP_RS18125 PF00271 Helicase conserved C-terminal domain VP_RS18125 PF00270 DEAD/DEAH box helicase VP_RS18125 PF03880 DbpA RNA binding domain VP_RS18130 PF13426 PAS domain VP_RS18130 PF00563 EAL domain VP_RS18130 PF00990 Diguanylate cyclase, GGDEF domain VP_RS18135 PF00871 Acetokinase family VP_RS18140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS18140 PF08447 PAS fold VP_RS18140 PF13426 PAS domain VP_RS18150 PF10063 Uncharacterized integral membrane protein (DUF2301) VP_RS18155 PF00682 HMGL-like VP_RS18160 PF00378 Enoyl-CoA hydratase/isomerase VP_RS18165 PF01039 Carboxyl transferase domain VP_RS18170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VP_RS18170 PF02770 Acyl-CoA dehydrogenase, middle domain VP_RS18170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VP_RS18175 PF00376 MerR family regulatory protein VP_RS18175 PF09278 MerR, DNA binding VP_RS18180 PF02803 Thiolase, C-terminal domain VP_RS18180 PF00108 Thiolase, N-terminal domain VP_RS18185 PF00171 Aldehyde dehydrogenase family VP_RS18190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VP_RS18190 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VP_RS18190 PF02770 Acyl-CoA dehydrogenase, middle domain VP_RS18195 PF00378 Enoyl-CoA hydratase/isomerase VP_RS18200 PF00378 Enoyl-CoA hydratase/isomerase VP_RS18205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VP_RS18205 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VP_RS18215 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VP_RS18215 PF06481 COX Aromatic Rich Motif VP_RS18220 PF00115 Cytochrome C and Quinol oxidase polypeptide I VP_RS18225 PF00510 Cytochrome c oxidase subunit III VP_RS18235 PF01040 UbiA prenyltransferase family VP_RS18245 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VP_RS18250 PF08031 Berberine and berberine like VP_RS18250 PF01565 FAD binding domain VP_RS18255 PF00005 ABC transporter VP_RS18260 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP_RS18265 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS18270 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS18280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS18280 PF03466 LysR substrate binding domain VP_RS18285 PF00043 Glutathione S-transferase, C-terminal domain VP_RS18285 PF02798 Glutathione S-transferase, N-terminal domain VP_RS18295 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VP_RS18295 PF00364 Biotin-requiring enzyme VP_RS18295 PF02817 e3 binding domain VP_RS18300 PF02779 Transketolase, pyrimidine binding domain VP_RS18300 PF02780 Transketolase, C-terminal domain VP_RS18305 PF00676 Dehydrogenase E1 component VP_RS18320 PF00012 Hsp70 protein VP_RS18325 PF04314 Copper chaperone PCu(A)C VP_RS18345 PF01497 Periplasmic binding protein VP_RS18350 PF01032 FecCD transport family VP_RS18355 PF01032 FecCD transport family VP_RS18360 PF00005 ABC transporter VP_RS18365 PF13411 MerR HTH family regulatory protein VP_RS18375 PF07715 TonB-dependent Receptor Plug Domain VP_RS18375 PF00593 TonB dependent receptor VP_RS18405 PF12805 FUSC-like inner membrane protein yccS VP_RS18410 PF12462 DNA helicase IV / RNA helicase N terminal VP_RS18410 PF00580 UvrD/REP helicase N-terminal domain VP_RS18410 PF13361 UvrD-like helicase C-terminal domain VP_RS18415 PF02142 MGS-like domain VP_RS18420 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VP_RS18425 PF00072 Response regulator receiver domain VP_RS18425 PF01627 Hpt domain VP_RS18425 PF00512 His Kinase A (phospho-acceptor) domain VP_RS18425 PF00672 HAMP domain VP_RS18425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS18440 PF00486 Transcriptional regulatory protein, C terminal VP_RS18440 PF00072 Response regulator receiver domain VP_RS18445 PF16385 Domain of unknown function VP_RS18445 PF00884 Sulfatase VP_RS18450 PF00884 Sulfatase VP_RS18460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS18460 PF03466 LysR substrate binding domain VP_RS18465 PF00884 Sulfatase VP_RS18470 PF13186 Iron-sulfur cluster-binding domain VP_RS18470 PF04055 Radical SAM superfamily VP_RS18475 PF07726 ATPase family associated with various cellular activities (AAA) VP_RS18475 PF17863 AAA lid domain VP_RS18490 PF00092 von Willebrand factor type A domain VP_RS18505 PF01872 RibD C-terminal domain VP_RS18505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VP_RS18510 PF03466 LysR substrate binding domain VP_RS18510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS18515 PF00781 Diacylglycerol kinase catalytic domain VP_RS18520 PF04076 Bacterial OB fold (BOF) protein VP_RS18535 PF04055 Radical SAM superfamily VP_RS18535 PF13186 Iron-sulfur cluster-binding domain VP_RS18545 PF08774 VRR-NUC domain VP_RS18545 PF18081 Fanconi anemia-associated nuclease SAP domain VP_RS18560 PF01435 Peptidase family M48 VP_RS18565 PF04011 LemA family VP_RS18570 PF03606 C4-dicarboxylate anaerobic carrier VP_RS18580 PF00583 Acetyltransferase (GNAT) family VP_RS18580 PF00814 Glycoprotease family VP_RS18590 PF00072 Response regulator receiver domain VP_RS18590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS18595 PF00155 Aminotransferase class I and II VP_RS18600 PF01926 50S ribosome-binding GTPase VP_RS18610 PF01752 Collagenase VP_RS18610 PF08453 Peptidase family M9 N-terminal VP_RS18610 PF04151 Bacterial pre-peptidase C-terminal domain VP_RS18620 PF12833 Helix-turn-helix domain VP_RS18625 PF03466 LysR substrate binding domain VP_RS18625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS18645 PF04972 BON domain VP_RS18645 PF13629 Pilus formation protein N terminal region VP_RS18645 PF00263 Bacterial type II and III secretion system protein VP_RS18660 PF00437 Type II/IV secretion system protein VP_RS18695 PF05736 OprF membrane domain VP_RS18695 PF00691 OmpA family VP_RS18705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS18705 PF03466 LysR substrate binding domain VP_RS18710 PF03466 LysR substrate binding domain VP_RS18710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS18720 PF00512 His Kinase A (phospho-acceptor) domain VP_RS18720 PF09456 RcsC Alpha-Beta-Loop (ABL) VP_RS18720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS18720 PF00072 Response regulator receiver domain VP_RS18725 PF13188 PAS domain VP_RS18725 PF00990 Diguanylate cyclase, GGDEF domain VP_RS18725 PF00563 EAL domain VP_RS18725 PF03707 Bacterial signalling protein N terminal repeat VP_RS18730 PF00196 Bacterial regulatory proteins, luxR family VP_RS18730 PF00072 Response regulator receiver domain VP_RS18735 PF00990 Diguanylate cyclase, GGDEF domain VP_RS18745 PF00072 Response regulator receiver domain VP_RS18745 PF00196 Bacterial regulatory proteins, luxR family VP_RS18760 PF01584 CheW-like domain VP_RS18760 PF00072 Response regulator receiver domain VP_RS18765 PF07963 Prokaryotic N-terminal methylation motif VP_RS18765 PF08334 Type II secretion system (T2SS), protein G VP_RS18775 PF00892 EamA-like transporter family VP_RS18785 PF01569 PAP2 superfamily VP_RS18795 PF07504 Fungalysin/Thermolysin Propeptide Motif VP_RS18795 PF03413 Peptidase propeptide and YPEB domain VP_RS18795 PF01447 Thermolysin metallopeptidase, catalytic domain VP_RS18795 PF02868 Thermolysin metallopeptidase, alpha-helical domain VP_RS18795 PF04151 Bacterial pre-peptidase C-terminal domain VP_RS18800 PF00893 Small Multidrug Resistance protein VP_RS18805 PF00892 EamA-like transporter family VP_RS18825 PF00171 Aldehyde dehydrogenase family VP_RS18830 PF00939 Sodium:sulfate symporter transmembrane region VP_RS18835 PF17203 Single cache domain 3 VP_RS18835 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VP_RS18835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS18835 PF00989 PAS fold VP_RS18840 PF00072 Response regulator receiver domain VP_RS18840 PF12431 Transcriptional regulator VP_RS18850 PF13187 4Fe-4S dicluster domain VP_RS18850 PF01645 Conserved region in glutamate synthase VP_RS18855 PF00141 Peroxidase VP_RS18860 PF09722 Protein of unknown function (DUF2384) VP_RS18870 PF01757 Acyltransferase family VP_RS18880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VP_RS18885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VP_RS18905 PF00571 CBS domain VP_RS18905 PF01769 Divalent cation transporter VP_RS18905 PF03448 MgtE intracellular N domain VP_RS18935 PF01327 Polypeptide deformylase VP_RS18940 PF00376 MerR family regulatory protein VP_RS18940 PF09278 MerR, DNA binding VP_RS18950 PF02253 Phospholipase A1 VP_RS18970 PF00005 ABC transporter VP_RS18970 PF00664 ABC transporter transmembrane region VP_RS18975 PF02811 PHP domain VP_RS18975 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VP_RS18975 PF00929 Exonuclease VP_RS18975 PF14579 Helix-hairpin-helix motif VP_RS18975 PF07733 Bacterial DNA polymerase III alpha NTPase domain VP_RS18975 PF11490 DNA polymerase III polC-type N-terminus II VP_RS18980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS18980 PF03466 LysR substrate binding domain VP_RS18985 PF01039 Carboxyl transferase domain VP_RS18985 PF17848 Acetyl-coA carboxylase zinc finger domain VP_RS18990 PF01212 Beta-eliminating lyase VP_RS19015 PF02347 Glycine cleavage system P-protein VP_RS19020 PF01597 Glycine cleavage H-protein VP_RS19025 PF00464 Serine hydroxymethyltransferase VP_RS19035 PF01571 Aminomethyltransferase folate-binding domain VP_RS19035 PF08669 Glycine cleavage T-protein C-terminal barrel domain VP_RS19045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS19055 PF00873 AcrB/AcrD/AcrF family VP_RS19065 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VP_RS19065 PF02378 Phosphotransferase system, EIIC VP_RS19070 PF00294 pfkB family carbohydrate kinase VP_RS19075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VP_RS19075 PF00381 PTS HPr component phosphorylation site VP_RS19080 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VP_RS19080 PF00356 Bacterial regulatory proteins, lacI family VP_RS19095 PF00563 EAL domain VP_RS19095 PF01590 GAF domain VP_RS19095 PF00990 Diguanylate cyclase, GGDEF domain VP_RS19095 PF00989 PAS fold VP_RS19100 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS19105 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP_RS19110 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS19115 PF00005 ABC transporter VP_RS19120 PF02887 Pyruvate kinase, alpha/beta domain VP_RS19120 PF00224 Pyruvate kinase, barrel domain VP_RS19125 PF07690 Major Facilitator Superfamily VP_RS19135 PF00512 His Kinase A (phospho-acceptor) domain VP_RS19135 PF00672 HAMP domain VP_RS19135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS19140 PF02954 Bacterial regulatory protein, Fis family VP_RS19140 PF00072 Response regulator receiver domain VP_RS19140 PF14532 Sigma-54 interaction domain VP_RS19150 PF00465 Iron-containing alcohol dehydrogenase VP_RS19155 PF06719 AraC-type transcriptional regulator N-terminus VP_RS19155 PF12833 Helix-turn-helix domain VP_RS19160 PF06483 Chitinase C VP_RS19160 PF00704 Glycosyl hydrolases family 18 VP_RS19165 PF00483 Nucleotidyl transferase VP_RS19170 PF01268 Formate--tetrahydrofolate ligase VP_RS19175 PF00294 pfkB family carbohydrate kinase VP_RS19190 PF11849 Domain of unknown function (DUF3369) VP_RS19195 PF13419 Haloacid dehalogenase-like hydrolase VP_RS19200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS19205 PF04336 Acyl carrier protein phosphodiesterase VP_RS19210 PF00270 DEAD/DEAH box helicase VP_RS19210 PF00271 Helicase conserved C-terminal domain VP_RS19215 PF12792 CSS motif domain associated with EAL VP_RS19215 PF00563 EAL domain VP_RS19230 PF01292 Prokaryotic cytochrome b561 VP_RS19235 PF04264 YceI-like domain VP_RS19240 PF01226 Formate/nitrite transporter VP_RS19245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS19245 PF03466 LysR substrate binding domain VP_RS19250 PF06496 Protein of unknown function (DUF1097) VP_RS19255 PF11398 Protein of unknown function (DUF2813) VP_RS19260 PF02872 5'-nucleotidase, C-terminal domain VP_RS19260 PF00149 Calcineurin-like phosphoesterase VP_RS19265 PF03741 Integral membrane protein TerC family VP_RS19280 PF12262 Bacterial virulence factor lipase N-terminal VP_RS19285 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VP_RS19300 PF03061 Thioesterase superfamily VP_RS19310 PF12793 Sugar transport-related sRNA regulator N-term VP_RS19310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP_RS19335 PF00226 DnaJ domain VP_RS19335 PF01556 DnaJ C terminal domain VP_RS19335 PF00684 DnaJ central domain VP_RS19345 PF00990 Diguanylate cyclase, GGDEF domain VP_RS19345 PF00563 EAL domain VP_RS19345 PF13188 PAS domain VP_RS19345 PF03707 Bacterial signalling protein N terminal repeat VP_RS19350 PF12241 Trans-2-enoyl-CoA reductase catalytic region VP_RS19350 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VP_RS19350 PF07055 Enoyl reductase FAD binding domain VP_RS19355 PF13472 GDSL-like Lipase/Acylhydrolase family VP_RS19360 PF00005 ABC transporter VP_RS19370 PF01266 FAD dependent oxidoreductase VP_RS19370 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VP_RS19375 PF02626 Carboxyltransferase domain, subdomain A and B VP_RS19380 PF02682 Carboxyltransferase domain, subdomain C and D VP_RS19385 PF03746 LamB/YcsF family VP_RS19390 PF00563 EAL domain VP_RS19390 PF08447 PAS fold VP_RS19390 PF05231 MASE1 VP_RS19390 PF13426 PAS domain VP_RS19390 PF00990 Diguanylate cyclase, GGDEF domain VP_RS19390 PF08448 PAS fold VP_RS19395 PF16363 GDP-mannose 4,6 dehydratase VP_RS19400 PF00593 TonB dependent receptor VP_RS19400 PF07715 TonB-dependent Receptor Plug Domain VP_RS19405 PF03466 LysR substrate binding domain VP_RS19405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS19410 PF13607 Succinyl-CoA ligase like flavodoxin domain VP_RS19410 PF00583 Acetyltransferase (GNAT) family VP_RS19410 PF13380 CoA binding domain VP_RS19420 PF01820 D-ala D-ala ligase N-terminus VP_RS19420 PF07478 D-ala D-ala ligase C-terminus VP_RS19430 PF01253 Translation initiation factor SUI1 VP_RS19515 PF05840 Bacteriophage replication gene A protein (GPA) VP_RS19545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS19545 PF03466 LysR substrate binding domain VP_RS19555 PF00582 Universal stress protein family VP_RS19560 PF03701 Uncharacterised protein family (UPF0181) VP_RS19575 PF00486 Transcriptional regulatory protein, C terminal VP_RS19575 PF00072 Response regulator receiver domain VP_RS19585 PF02233 NAD(P) transhydrogenase beta subunit VP_RS19590 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VP_RS19590 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VP_RS19590 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VP_RS19605 PF00990 Diguanylate cyclase, GGDEF domain VP_RS19605 PF00072 Response regulator receiver domain VP_RS19615 PF00990 Diguanylate cyclase, GGDEF domain VP_RS19615 PF00360 Phytochrome region VP_RS19615 PF00563 EAL domain VP_RS19615 PF01590 GAF domain VP_RS19625 PF03459 TOBE domain VP_RS19625 PF00005 ABC transporter VP_RS19630 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS19640 PF07685 CobB/CobQ-like glutamine amidotransferase domain VP_RS19645 PF04076 Bacterial OB fold (BOF) protein VP_RS19655 PF18030 RimK PreATP-grasp domain VP_RS19655 PF08443 RimK-like ATP-grasp domain VP_RS19660 PF00155 Aminotransferase class I and II VP_RS19665 PF12833 Helix-turn-helix domain VP_RS19670 PF01554 MatE VP_RS19680 PF03477 ATP cone domain VP_RS19680 PF13597 Anaerobic ribonucleoside-triphosphate reductase VP_RS19690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS19695 PF00873 AcrB/AcrD/AcrF family VP_RS19705 PF04143 Sulphur transport VP_RS19720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VP_RS19720 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS19745 PF00691 OmpA family VP_RS19745 PF01389 OmpA-like transmembrane domain VP_RS19760 PF00384 Molybdopterin oxidoreductase VP_RS19765 PF03466 LysR substrate binding domain VP_RS19765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS19770 PF02634 FdhD/NarQ family VP_RS19775 PF07690 Major Facilitator Superfamily VP_RS19780 PF00196 Bacterial regulatory proteins, luxR family VP_RS19780 PF00072 Response regulator receiver domain VP_RS19785 PF05231 MASE1 VP_RS19785 PF07730 Histidine kinase VP_RS19785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS19790 PF07690 Major Facilitator Superfamily VP_RS19795 PF01238 Phosphomannose isomerase type I VP_RS19815 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VP_RS19815 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VP_RS19820 PF00085 Thioredoxin VP_RS19825 PF07690 Major Facilitator Superfamily VP_RS19830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS19830 PF07495 Y_Y_Y domain VP_RS19830 PF12833 Helix-turn-helix domain VP_RS19830 PF00072 Response regulator receiver domain VP_RS19830 PF00512 His Kinase A (phospho-acceptor) domain VP_RS19830 PF07494 Two component regulator propeller VP_RS19835 PF01554 MatE VP_RS19840 PF11756 Nitrous oxide-stimulated promoter VP_RS19855 PF00593 TonB dependent receptor VP_RS19855 PF07715 TonB-dependent Receptor Plug Domain VP_RS19865 PF03605 Anaerobic c4-dicarboxylate membrane transporter VP_RS19880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VP_RS19880 PF14824 Sirohaem biosynthesis protein central VP_RS19880 PF10414 Sirohaem synthase dimerisation region VP_RS19885 PF01226 Formate/nitrite transporter VP_RS19890 PF13806 Rieske-like [2Fe-2S] domain VP_RS19895 PF18267 Rubredoxin NAD+ reductase C-terminal domain VP_RS19895 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VP_RS19895 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VP_RS19895 PF04324 BFD-like [2Fe-2S] binding domain VP_RS19895 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS19900 PF01272 Transcription elongation factor, GreA/GreB, C-term VP_RS19900 PF14760 Rnk N-terminus VP_RS19935 PF06965 Na+/H+ antiporter 1 VP_RS19935 PF13462 Thioredoxin VP_RS19955 PF09154 Domain of unknown function (DUF1939) VP_RS19955 PF00128 Alpha amylase, catalytic domain VP_RS19970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS19970 PF00672 HAMP domain VP_RS19975 PF00842 Alanine racemase, C-terminal domain VP_RS19975 PF01168 Alanine racemase, N-terminal domain VP_RS19990 PF01565 FAD binding domain VP_RS19990 PF09330 D-lactate dehydrogenase, membrane binding VP_RS19995 PF03466 LysR substrate binding domain VP_RS19995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS20010 PF05762 VWA domain containing CoxE-like protein VP_RS20015 PF07728 AAA domain (dynein-related subfamily) VP_RS20015 PF12592 Protein of unknown function (DUF3763) VP_RS20015 PF17868 AAA lid domain VP_RS20025 PF01212 Beta-eliminating lyase VP_RS20030 PF00034 Cytochrome c VP_RS20035 PF03606 C4-dicarboxylate anaerobic carrier VP_RS20045 PF07690 Major Facilitator Superfamily VP_RS20055 PF08212 Lipocalin-like domain VP_RS20075 PF13476 AAA domain VP_RS20080 PF12320 Type 5 capsule protein repressor C-terminal domain VP_RS20080 PF00149 Calcineurin-like phosphoesterase VP_RS20095 PF16671 Actin cross-linking domain VP_RS20095 PF04717 Type VI secretion system, phage-baseplate injector VP_RS20105 PF00004 ATPase family associated with various cellular activities (AAA) VP_RS20105 PF07724 AAA domain (Cdc48 subfamily) VP_RS20105 PF17871 AAA lid domain VP_RS20105 PF10431 C-terminal, D2-small domain, of ClpB protein VP_RS20165 PF00691 OmpA family VP_RS20165 PF13677 Membrane MotB of proton-channel complex MotA/MotB VP_RS20185 PF03793 PASTA domain VP_RS20185 PF00069 Protein kinase domain VP_RS20210 PF00211 Adenylate and Guanylate cyclase catalytic domain VP_RS20210 PF00072 Response regulator receiver domain VP_RS20225 PF08361 MAATS-type transcriptional repressor, C-terminal region VP_RS20225 PF00440 Bacterial regulatory proteins, tetR family VP_RS20240 PF13806 Rieske-like [2Fe-2S] domain VP_RS20240 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS20240 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VP_RS20240 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VP_RS20240 PF04324 BFD-like [2Fe-2S] binding domain VP_RS20240 PF18267 Rubredoxin NAD+ reductase C-terminal domain VP_RS20245 PF00005 ABC transporter VP_RS20250 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS20260 PF03861 ANTAR domain VP_RS20260 PF08376 Nitrate and nitrite sensing VP_RS20265 PF01738 Dienelactone hydrolase family VP_RS20270 PF02885 Glycosyl transferase family, helical bundle domain VP_RS20270 PF00591 Glycosyl transferase family, a/b domain VP_RS20275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VP_RS20275 PF14824 Sirohaem biosynthesis protein central VP_RS20275 PF10414 Sirohaem synthase dimerisation region VP_RS20280 PF01568 Molydopterin dinucleotide binding domain VP_RS20280 PF00384 Molybdopterin oxidoreductase VP_RS20280 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VP_RS20290 PF03222 Tryptophan/tyrosine permease family VP_RS20295 PF00072 Response regulator receiver domain VP_RS20295 PF00990 Diguanylate cyclase, GGDEF domain VP_RS20305 PF00082 Subtilase family VP_RS20305 PF01483 Proprotein convertase P-domain VP_RS20315 PF00245 Alkaline phosphatase VP_RS20330 PF00486 Transcriptional regulatory protein, C terminal VP_RS20330 PF00072 Response regulator receiver domain VP_RS20350 PF01048 Phosphorylase superfamily VP_RS20355 PF04973 Nicotinamide mononucleotide transporter VP_RS20360 PF00356 Bacterial regulatory proteins, lacI family VP_RS20365 PF00294 pfkB family carbohydrate kinase VP_RS20370 PF13407 Periplasmic binding protein domain VP_RS20375 PF02653 Branched-chain amino acid transport system / permease component VP_RS20380 PF00005 ABC transporter VP_RS20385 PF05025 RbsD / FucU transport protein family VP_RS20390 PF00990 Diguanylate cyclase, GGDEF domain VP_RS20390 PF00563 EAL domain VP_RS20395 PF01048 Phosphorylase superfamily VP_RS20435 PF04116 Fatty acid hydroxylase superfamily VP_RS20450 PF00512 His Kinase A (phospho-acceptor) domain VP_RS20450 PF09308 LuxQ, periplasmic VP_RS20450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS20450 PF00072 Response regulator receiver domain VP_RS20455 PF00034 Cytochrome c VP_RS20455 PF03150 Di-haem cytochrome c peroxidase VP_RS20460 PF00990 Diguanylate cyclase, GGDEF domain VP_RS20460 PF13188 PAS domain VP_RS20460 PF00563 EAL domain VP_RS20460 PF03707 Bacterial signalling protein N terminal repeat VP_RS20470 PF16200 C-terminal region of band_7 VP_RS20470 PF01145 SPFH domain / Band 7 family VP_RS20480 PF00881 Nitroreductase family VP_RS20485 PF00571 CBS domain VP_RS20485 PF00005 ABC transporter VP_RS20490 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS20495 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VP_RS20500 PF00732 GMC oxidoreductase VP_RS20500 PF05199 GMC oxidoreductase VP_RS20505 PF00171 Aldehyde dehydrogenase family VP_RS20510 PF13977 BetI-type transcriptional repressor, C-terminal VP_RS20510 PF00440 Bacterial regulatory proteins, tetR family VP_RS20515 PF17151 Periplasmic sensor domain VP_RS20515 PF00990 Diguanylate cyclase, GGDEF domain VP_RS20525 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VP_RS20525 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VP_RS20535 PF00378 Enoyl-CoA hydratase/isomerase VP_RS20540 PF02770 Acyl-CoA dehydrogenase, middle domain VP_RS20540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VP_RS20540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VP_RS20545 PF00171 Aldehyde dehydrogenase family VP_RS20550 PF02803 Thiolase, C-terminal domain VP_RS20550 PF00108 Thiolase, N-terminal domain VP_RS20555 PF09278 MerR, DNA binding VP_RS20555 PF00376 MerR family regulatory protein VP_RS20560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VP_RS20560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VP_RS20560 PF02770 Acyl-CoA dehydrogenase, middle domain VP_RS20565 PF01039 Carboxyl transferase domain VP_RS20570 PF00378 Enoyl-CoA hydratase/isomerase VP_RS20575 PF00289 Biotin carboxylase, N-terminal domain VP_RS20575 PF02785 Biotin carboxylase C-terminal domain VP_RS20575 PF00364 Biotin-requiring enzyme VP_RS20575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VP_RS20580 PF00682 HMGL-like VP_RS20585 PF01627 Hpt domain VP_RS20585 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VP_RS20585 PF00672 HAMP domain VP_RS20585 PF00072 Response regulator receiver domain VP_RS20585 PF00512 His Kinase A (phospho-acceptor) domain VP_RS20585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS20600 PF12794 Mechanosensitive ion channel inner membrane domain 1 VP_RS20600 PF00924 Mechanosensitive ion channel VP_RS20600 PF12795 Mechanosensitive ion channel porin domain VP_RS20605 PF14602 Hexapeptide repeat of succinyl-transferase VP_RS20605 PF12464 Maltose acetyltransferase VP_RS20610 PF00392 Bacterial regulatory proteins, gntR family VP_RS20610 PF00155 Aminotransferase class I and II VP_RS20615 PF01654 Cytochrome bd terminal oxidase subunit I VP_RS20620 PF02322 Cytochrome bd terminal oxidase subunit II VP_RS20630 PF02567 Phenazine biosynthesis-like protein VP_RS20635 PF02627 Carboxymuconolactone decarboxylase family VP_RS20640 PF13411 MerR HTH family regulatory protein VP_RS20650 PF00034 Cytochrome c VP_RS20660 PF05724 Thiopurine S-methyltransferase (TPMT) VP_RS20665 PF14535 AMP-binding enzyme C-terminal domain VP_RS20665 PF00501 AMP-binding enzyme VP_RS20670 PF00005 ABC transporter VP_RS20695 PF00005 ABC transporter VP_RS20695 PF12399 Branched-chain amino acid ATP-binding cassette transporter VP_RS20705 PF01012 Electron transfer flavoprotein domain VP_RS20710 PF01012 Electron transfer flavoprotein domain VP_RS20710 PF00766 Electron transfer flavoprotein FAD-binding domain VP_RS20715 PF00501 AMP-binding enzyme VP_RS20715 PF13193 AMP-binding enzyme C-terminal domain VP_RS20720 PF00478 IMP dehydrogenase / GMP reductase domain VP_RS20725 PF01256 Carbohydrate kinase VP_RS20725 PF03853 YjeF-related protein N-terminus VP_RS20735 PF00072 Response regulator receiver domain VP_RS20740 PF00248 Aldo/keto reductase family VP_RS20755 PF00654 Voltage gated chloride channel VP_RS20765 PF01566 Natural resistance-associated macrophage protein VP_RS20770 PF01227 GTP cyclohydrolase I VP_RS20775 PF03454 MoeA C-terminal region (domain IV) VP_RS20775 PF03453 MoeA N-terminal region (domain I and II) VP_RS20775 PF00994 Probable molybdopterin binding domain VP_RS20780 PF00899 ThiF family VP_RS20795 PF00581 Rhodanese-like domain VP_RS20800 PF00990 Diguanylate cyclase, GGDEF domain VP_RS20800 PF00563 EAL domain VP_RS20800 PF03707 Bacterial signalling protein N terminal repeat VP_RS20805 PF08329 Chitinase A, N-terminal domain VP_RS20805 PF00704 Glycosyl hydrolases family 18 VP_RS20815 PF00923 Transaldolase/Fructose-6-phosphate aldolase VP_RS20820 PF00456 Transketolase, thiamine diphosphate binding domain VP_RS20820 PF02780 Transketolase, C-terminal domain VP_RS20820 PF02779 Transketolase, pyrimidine binding domain VP_RS20825 PF08447 PAS fold VP_RS20825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS20830 PF07690 Major Facilitator Superfamily VP_RS20835 PF00793 DAHP synthetase I family VP_RS20840 PF01389 OmpA-like transmembrane domain VP_RS20840 PF00691 OmpA family VP_RS20845 PF13419 Haloacid dehalogenase-like hydrolase VP_RS20850 PF00472 RF-1 domain VP_RS20855 PF00672 HAMP domain VP_RS20855 PF12729 Four helix bundle sensory module for signal transduction VP_RS20855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS20860 PF00873 AcrB/AcrD/AcrF family VP_RS20865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS20870 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VP_RS20875 PF01546 Peptidase family M20/M25/M40 VP_RS20875 PF07687 Peptidase dimerisation domain VP_RS20890 PF00072 Response regulator receiver domain VP_RS20890 PF00196 Bacterial regulatory proteins, luxR family VP_RS20895 PF00672 HAMP domain VP_RS20895 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VP_RS20895 PF07730 Histidine kinase VP_RS20895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS20900 PF12838 4Fe-4S dicluster domain VP_RS20900 PF13187 4Fe-4S dicluster domain VP_RS20910 PF01568 Molydopterin dinucleotide binding domain VP_RS20910 PF00384 Molybdopterin oxidoreductase VP_RS20910 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VP_RS20915 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) VP_RS20920 PF03264 NapC/NirT cytochrome c family, N-terminal region VP_RS20930 PF00561 alpha/beta hydrolase fold VP_RS20930 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus VP_RS20940 PF02803 Thiolase, C-terminal domain VP_RS20940 PF00108 Thiolase, N-terminal domain VP_RS20945 PF00106 short chain dehydrogenase VP_RS20950 PF01810 LysE type translocator VP_RS20960 PF07549 SecD/SecF GG Motif VP_RS20960 PF02355 Protein export membrane protein VP_RS20965 PF07549 SecD/SecF GG Motif VP_RS20965 PF13721 SecD export protein N-terminal TM region VP_RS20965 PF02355 Protein export membrane protein VP_RS20990 PF01037 Lrp/AsnC ligand binding domain VP_RS21010 PF00529 HlyD membrane-fusion protein of T1SS VP_RS21010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS21020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS21020 PF00512 His Kinase A (phospho-acceptor) domain VP_RS21020 PF09308 LuxQ, periplasmic VP_RS21020 PF00072 Response regulator receiver domain VP_RS21025 PF13407 Periplasmic binding protein domain VP_RS21030 PF01541 GIY-YIG catalytic domain VP_RS21035 PF04337 Protein of unknown function, DUF480 VP_RS21045 PF04363 Protein of unknown function (DUF496) VP_RS21050 PF01554 MatE VP_RS21055 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VP_RS21060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VP_RS21060 PF00072 Response regulator receiver domain VP_RS21060 PF01627 Hpt domain VP_RS21060 PF00512 His Kinase A (phospho-acceptor) domain VP_RS21060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS21060 PF00672 HAMP domain VP_RS21065 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VP_RS21065 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VP_RS21080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS21080 PF03466 LysR substrate binding domain VP_RS21085 PF01037 Lrp/AsnC ligand binding domain VP_RS21085 PF13404 AsnC-type helix-turn-helix domain VP_RS21090 PF13520 Amino acid permease VP_RS21095 PF00392 Bacterial regulatory proteins, gntR family VP_RS21095 PF00155 Aminotransferase class I and II VP_RS21105 PF03109 ABC1 family VP_RS21110 PF03448 MgtE intracellular N domain VP_RS21110 PF00571 CBS domain VP_RS21110 PF01769 Divalent cation transporter VP_RS21115 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin VP_RS21120 PF07969 Amidohydrolase family VP_RS21130 PF01966 HD domain VP_RS21140 PF07690 Major Facilitator Superfamily VP_RS21150 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VP_RS21155 PF00255 Glutathione peroxidase VP_RS21170 PF02371 Transposase IS116/IS110/IS902 family VP_RS21170 PF01548 Transposase VP_RS21220 PF06958 S-type Pyocin VP_RS21225 PF01320 Colicin immunity protein / pyocin immunity protein VP_RS21235 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain VP_RS21235 PF14490 Helix-hairpin-helix containing domain VP_RS21235 PF13538 UvrD-like helicase C-terminal domain VP_RS21260 PF01323 DSBA-like thioredoxin domain VP_RS21275 PF00106 short chain dehydrogenase VP_RS21280 PF00486 Transcriptional regulatory protein, C terminal VP_RS21280 PF00072 Response regulator receiver domain VP_RS21285 PF00512 His Kinase A (phospho-acceptor) domain VP_RS21285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS21285 PF00672 HAMP domain VP_RS21295 PF01219 Prokaryotic diacylglycerol kinase VP_RS21300 PF00884 Sulfatase VP_RS21300 PF08019 Phosphoethanolamine transferase EptA/EptB VP_RS21305 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VP_RS21310 PF07690 Major Facilitator Superfamily VP_RS21325 PF01047 MarR family VP_RS21335 PF01734 Patatin-like phospholipase VP_RS21345 PF00313 'Cold-shock' DNA-binding domain VP_RS21360 PF00962 Adenosine/AMP deaminase VP_RS21365 PF08534 Redoxin VP_RS21365 PF00462 Glutaredoxin VP_RS21380 PF00768 D-alanyl-D-alanine carboxypeptidase VP_RS21380 PF07943 Penicillin-binding protein 5, C-terminal domain VP_RS21385 PF02798 Glutathione S-transferase, N-terminal domain VP_RS21390 PF00440 Bacterial regulatory proteins, tetR family VP_RS21390 PF02909 Tetracyclin repressor-like, C-terminal domain VP_RS21395 PF01872 RibD C-terminal domain VP_RS21465 PF03347 Vibrio thermostable direct hemolysin VP_RS21510 PF00563 EAL domain VP_RS21510 PF12792 CSS motif domain associated with EAL VP_RS21575 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VP_RS21575 PF02874 ATP synthase alpha/beta family, beta-barrel domain VP_RS21575 PF18269 T3SS EscN ATPase C-terminal domain VP_RS21580 PF00263 Bacterial type II and III secretion system protein VP_RS21580 PF03958 Bacterial type II/III secretion system short domain VP_RS21595 PF00813 FliP family VP_RS21620 PF00486 Transcriptional regulatory protein, C terminal VP_RS21645 PF00691 OmpA family VP_RS21650 PF01312 FlhB HrpN YscU SpaS Family VP_RS21655 PF00771 FHIPEP family VP_RS21745 PF13402 Peptidase M60, enhancin and enhancin-like VP_RS21745 PF17291 N-terminal domain of M60-like peptidases VP_RS21745 PF13322 Domain of unknown function (DUF4092) VP_RS21755 PF03347 Vibrio thermostable direct hemolysin VP_RS21850 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS21855 PF14785 Maltose transport system permease protein MalF P2 domain VP_RS21855 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS21860 PF01547 Bacterial extracellular solute-binding protein VP_RS21865 PF00005 ABC transporter VP_RS21865 PF08402 TOBE domain VP_RS21870 PF02397 Bacterial sugar transferase VP_RS21895 PF00534 Glycosyl transferases group 1 VP_RS21895 PF13439 Glycosyltransferase Family 4 VP_RS21930 PF00440 Bacterial regulatory proteins, tetR family VP_RS21930 PF16925 Tetracyclin repressor-like, C-terminal domain VP_RS21935 PF00107 Zinc-binding dehydrogenase VP_RS21935 PF16884 N-terminal domain of oxidoreductase VP_RS21940 PF13417 Glutathione S-transferase, N-terminal domain VP_RS21945 PF06628 Catalase-related immune-responsive VP_RS21945 PF00199 Catalase VP_RS21950 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VP_RS21950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VP_RS21960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VP_RS21970 PF12833 Helix-turn-helix domain VP_RS21975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VP_RS21975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VP_RS21980 PF01238 Phosphomannose isomerase type I VP_RS21990 PF13419 Haloacid dehalogenase-like hydrolase VP_RS21995 PF00127 Copper binding proteins, plastocyanin/azurin family VP_RS22000 PF03707 Bacterial signalling protein N terminal repeat VP_RS22000 PF00990 Diguanylate cyclase, GGDEF domain VP_RS22000 PF00563 EAL domain VP_RS22005 PF02386 Cation transport protein VP_RS22010 PF02254 TrkA-N domain VP_RS22010 PF02080 TrkA-C domain VP_RS22015 PF00486 Transcriptional regulatory protein, C terminal VP_RS22015 PF00072 Response regulator receiver domain VP_RS22020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS22020 PF02702 Osmosensitive K+ channel His kinase sensor domain VP_RS22020 PF00512 His Kinase A (phospho-acceptor) domain VP_RS22020 PF13493 Domain of unknown function (DUF4118) VP_RS22020 PF13493 Domain of unknown function (DUF4118) VP_RS22020 PF02702 Osmosensitive K+ channel His kinase sensor domain VP_RS22020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS22020 PF00512 His Kinase A (phospho-acceptor) domain VP_RS22025 PF00005 ABC transporter VP_RS22025 PF00664 ABC transporter transmembrane region VP_RS22030 PF00593 TonB dependent receptor VP_RS22030 PF07715 TonB-dependent Receptor Plug Domain VP_RS22035 PF00005 ABC transporter VP_RS22040 PF01497 Periplasmic binding protein VP_RS22045 PF01032 FecCD transport family VP_RS22055 PF00691 OmpA family VP_RS22070 PF00529 HlyD membrane-fusion protein of T1SS VP_RS22075 PF00664 ABC transporter transmembrane region VP_RS22075 PF00005 ABC transporter VP_RS22085 PF00196 Bacterial regulatory proteins, luxR family VP_RS22090 PF00196 Bacterial regulatory proteins, luxR family VP_RS22100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS22100 PF02743 Cache domain VP_RS22100 PF00672 HAMP domain VP_RS22105 PF07726 ATPase family associated with various cellular activities (AAA) VP_RS22105 PF17863 AAA lid domain VP_RS22110 PF01882 Protein of unknown function DUF58 VP_RS22120 PF13519 von Willebrand factor type A domain VP_RS22125 PF13519 von Willebrand factor type A domain VP_RS22125 PF07584 Aerotolerance regulator N-terminal VP_RS22140 PF00005 ABC transporter VP_RS22145 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS22150 PF00528 Binding-protein-dependent transport system inner membrane component VP_RS22155 PF12849 PBP superfamily domain VP_RS22160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS22160 PF00672 HAMP domain VP_RS22180 PF00593 TonB dependent receptor VP_RS22180 PF07715 TonB-dependent Receptor Plug Domain VP_RS22185 PF00326 Prolyl oligopeptidase family VP_RS22185 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VP_RS22190 PF00270 DEAD/DEAH box helicase VP_RS22190 PF00271 Helicase conserved C-terminal domain VP_RS22200 PF01476 LysM domain VP_RS22200 PF17969 L,D-transpeptidase C-terminal domain VP_RS22200 PF03734 L,D-transpeptidase catalytic domain VP_RS22205 PF00875 DNA photolyase VP_RS22205 PF03441 FAD binding domain of DNA photolyase VP_RS22210 PF13411 MerR HTH family regulatory protein VP_RS22215 PF08349 Protein of unknown function (DUF1722) VP_RS22220 PF01048 Phosphorylase superfamily VP_RS22235 PF00990 Diguanylate cyclase, GGDEF domain VP_RS22240 PF11742 Protein of unknown function (DUF3302) VP_RS22245 PF00529 HlyD membrane-fusion protein of T1SS VP_RS22245 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VP_RS22250 PF07155 ECF-type riboflavin transporter, S component VP_RS22255 PF00005 ABC transporter VP_RS22255 PF12558 ATP-binding cassette cobalt transporter VP_RS22270 PF13237 4Fe-4S dicluster domain VP_RS22270 PF12801 4Fe-4S binding domain VP_RS22275 PF12838 4Fe-4S dicluster domain VP_RS22275 PF12800 4Fe-4S binding domain VP_RS22280 PF00583 Acetyltransferase (GNAT) family VP_RS22295 PF07238 PilZ domain VP_RS22295 PF12945 Flagellar protein YcgR VP_RS22300 PF00672 HAMP domain VP_RS22300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS22305 PF05362 Lon protease (S16) C-terminal proteolytic domain VP_RS22305 PF13654 AAA domain VP_RS22315 PF00005 ABC transporter VP_RS22315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VP_RS22320 PF00326 Prolyl oligopeptidase family VP_RS22320 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VP_RS22325 PF03466 LysR substrate binding domain VP_RS22325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS22330 PF02652 L-lactate permease VP_RS22335 PF01070 FMN-dependent dehydrogenase VP_RS22345 PF00924 Mechanosensitive ion channel VP_RS22350 PF00194 Eukaryotic-type carbonic anhydrase VP_RS22380 PF08240 Alcohol dehydrogenase GroES-like domain VP_RS22380 PF00107 Zinc-binding dehydrogenase VP_RS22385 PF00155 Aminotransferase class I and II VP_RS22390 PF00563 EAL domain VP_RS22390 PF00990 Diguanylate cyclase, GGDEF domain VP_RS22390 PF03707 Bacterial signalling protein N terminal repeat VP_RS22395 PF00497 Bacterial extracellular solute-binding proteins, family 3 VP_RS22400 PF00266 Aminotransferase class-V VP_RS22405 PF00080 Copper/zinc superoxide dismutase (SODC) VP_RS22410 PF08448 PAS fold VP_RS22410 PF00512 His Kinase A (phospho-acceptor) domain VP_RS22410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS22410 PF00072 Response regulator receiver domain VP_RS22410 PF13426 PAS domain VP_RS22415 PF00486 Transcriptional regulatory protein, C terminal VP_RS22415 PF00072 Response regulator receiver domain VP_RS22435 PF03466 LysR substrate binding domain VP_RS22435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS22440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VP_RS22475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS22475 PF03466 LysR substrate binding domain VP_RS22490 PF18269 T3SS EscN ATPase C-terminal domain VP_RS22490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VP_RS22500 PF01706 FliG C-terminal domain VP_RS22500 PF14842 FliG N-terminal domain VP_RS22500 PF14841 FliG middle domain VP_RS22505 PF08345 Flagellar M-ring protein C-terminal VP_RS22505 PF01514 Secretory protein of YscJ/FliF family VP_RS22510 PF02049 Flagellar hook-basal body complex protein FliE VP_RS22515 PF02954 Bacterial regulatory protein, Fis family VP_RS22515 PF00072 Response regulator receiver domain VP_RS22515 PF00158 Sigma-54 interaction domain VP_RS22530 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VP_RS22535 PF00813 FliP family VP_RS22540 PF01313 Bacterial export proteins, family 3 VP_RS22545 PF01311 Bacterial export proteins, family 1 VP_RS22550 PF01312 FlhB HrpN YscU SpaS Family VP_RS22555 PF00771 FHIPEP family VP_RS22565 PF00669 Bacterial flagellin N-terminal helical region VP_RS22565 PF00700 Bacterial flagellin C-terminal helical region VP_RS22575 PF02465 Flagellar hook-associated protein 2 N-terminus VP_RS22575 PF07195 Flagellar hook-associated protein 2 C-terminus VP_RS22575 PF07196 Flagellin hook IN motif VP_RS22580 PF02561 Flagellar protein FliS VP_RS22595 PF03748 Flagellar basal body-associated protein FliL VP_RS22600 PF04545 Sigma-70, region 4 VP_RS22600 PF04542 Sigma-70 region 2 VP_RS22605 PF01618 MotA/TolQ/ExbB proton channel family VP_RS22610 PF00691 OmpA family VP_RS22610 PF13677 Membrane MotB of proton-channel complex MotA/MotB VP_RS22620 PF08000 Bacterial PH domain VP_RS22655 PF01228 Glycine radical VP_RS22655 PF02901 Pyruvate formate lyase-like VP_RS22660 PF04055 Radical SAM superfamily VP_RS22665 PF00923 Transaldolase/Fructose-6-phosphate aldolase VP_RS22675 PF00583 Acetyltransferase (GNAT) family VP_RS22690 PF07690 Major Facilitator Superfamily VP_RS22695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS22695 PF03466 LysR substrate binding domain VP_RS22700 PF00892 EamA-like transporter family VP_RS22720 PF13533 Biotin-lipoyl like VP_RS22730 PF01594 AI-2E family transporter VP_RS22735 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VP_RS22745 PF00175 Oxidoreductase NAD-binding domain VP_RS22745 PF00970 Oxidoreductase FAD-binding domain VP_RS22755 PF09905 DNA-binding protein VF530 VP_RS22760 PF03466 LysR substrate binding domain VP_RS22760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS22770 PF00881 Nitroreductase family VP_RS22775 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VP_RS22775 PF12833 Helix-turn-helix domain VP_RS22780 PF00686 Starch binding domain VP_RS22780 PF00128 Alpha amylase, catalytic domain VP_RS22785 PF00768 D-alanyl-D-alanine carboxypeptidase VP_RS22785 PF07943 Penicillin-binding protein 5, C-terminal domain VP_RS22790 PF00561 alpha/beta hydrolase fold VP_RS22805 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading VP_RS22805 PF18416 N-acetylglucosamine binding protein domain 2 VP_RS22810 PF01734 Patatin-like phospholipase VP_RS22815 PF01914 MarC family integral membrane protein VP_RS22820 PF00881 Nitroreductase family VP_RS22825 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VP_RS22825 PF10531 SLBB domain VP_RS22825 PF02563 Polysaccharide biosynthesis/export protein VP_RS22830 PF01451 Low molecular weight phosphotyrosine protein phosphatase VP_RS22835 PF02706 Chain length determinant protein VP_RS22835 PF13807 G-rich domain on putative tyrosine kinase VP_RS22835 PF13614 AAA domain VP_RS22845 PF08803 Putative mono-oxygenase ydhR VP_RS22850 PF03466 LysR substrate binding domain VP_RS22850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS22860 PF00375 Sodium:dicarboxylate symporter family VP_RS22865 PF06803 Protein of unknown function (DUF1232) VP_RS22870 PF01546 Peptidase family M20/M25/M40 VP_RS22870 PF07687 Peptidase dimerisation domain VP_RS22875 PF07670 Nucleoside recognition VP_RS22880 PF07670 Nucleoside recognition VP_RS22895 PF00128 Alpha amylase, catalytic domain VP_RS22900 PF00912 Transglycosylase VP_RS22905 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VP_RS22905 PF02806 Alpha amylase, C-terminal all-beta domain VP_RS22905 PF00128 Alpha amylase, catalytic domain VP_RS22910 PF02446 4-alpha-glucanotransferase VP_RS22915 PF00343 Carbohydrate phosphorylase VP_RS22920 PF17874 MalT-like TPR region VP_RS22920 PF00196 Bacterial regulatory proteins, luxR family VP_RS22935 PF02630 SCO1/SenC VP_RS22945 PF00367 phosphotransferase system, EIIB VP_RS22945 PF02378 Phosphotransferase system, EIIC VP_RS22950 PF03193 RsgA GTPase VP_RS22955 PF00375 Sodium:dicarboxylate symporter family VP_RS22965 PF08543 Phosphomethylpyrimidine kinase VP_RS22975 PF13520 Amino acid permease VP_RS22980 PF01276 Orn/Lys/Arg decarboxylase, major domain VP_RS22980 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VP_RS22980 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VP_RS22995 PF11852 Domain of unknown function (DUF3372) VP_RS22995 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VP_RS22995 PF03714 Bacterial pullanase-associated domain VP_RS22995 PF17967 Pullulanase N2 domain VP_RS22995 PF18494 Pullulanase Ins domain VP_RS23000 PF04231 Endonuclease I VP_RS23005 PF02903 Alpha amylase, N-terminal ig-like domain VP_RS23005 PF00128 Alpha amylase, catalytic domain VP_RS23005 PF16657 Maltogenic Amylase, C-terminal domain VP_RS23020 PF02264 LamB porin VP_RS23025 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VP_RS23025 PF00128 Alpha amylase, catalytic domain VP_RS23035 PF07690 Major Facilitator Superfamily VP_RS23045 PF04225 Opacity-associated protein A LysM-like domain VP_RS23045 PF01551 Peptidase family M23 VP_RS23055 PF00675 Insulinase (Peptidase family M16) VP_RS23055 PF05193 Peptidase M16 inactive domain VP_RS23060 PF00672 HAMP domain VP_RS23060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS23065 PF00005 ABC transporter VP_RS23070 PF01032 FecCD transport family VP_RS23075 PF01032 FecCD transport family VP_RS23080 PF01497 Periplasmic binding protein VP_RS23085 PF00593 TonB dependent receptor VP_RS23085 PF07715 TonB-dependent Receptor Plug Domain VP_RS23085 PF07660 Secretin and TonB N terminus short domain VP_RS23090 PF07715 TonB-dependent Receptor Plug Domain VP_RS23090 PF00593 TonB dependent receptor VP_RS23095 PF00206 Lyase VP_RS23095 PF02655 ATP-grasp domain VP_RS23100 PF06276 Ferric iron reductase FhuF-like transporter VP_RS23100 PF04183 IucA / IucC family VP_RS23110 PF04183 IucA / IucC family VP_RS23110 PF06276 Ferric iron reductase FhuF-like transporter VP_RS23115 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VP_RS23115 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VP_RS23120 PF01547 Bacterial extracellular solute-binding protein VP_RS23125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS23125 PF08521 Two-component sensor kinase N-terminal VP_RS23125 PF00512 His Kinase A (phospho-acceptor) domain VP_RS23130 PF00486 Transcriptional regulatory protein, C terminal VP_RS23130 PF00072 Response regulator receiver domain VP_RS23135 PF02378 Phosphotransferase system, EIIC VP_RS23135 PF00367 phosphotransferase system, EIIB VP_RS23150 PF02653 Branched-chain amino acid transport system / permease component VP_RS23155 PF00005 ABC transporter VP_RS23160 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VP_RS23165 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VP_RS23165 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VP_RS23170 PF00596 Class II Aldolase and Adducin N-terminal domain VP_RS23175 PF11762 L-arabinose isomerase C-terminal domain VP_RS23175 PF02610 L-arabinose isomerase VP_RS23185 PF02311 AraC-like ligand binding domain VP_RS23185 PF12833 Helix-turn-helix domain VP_RS23200 PF02566 OsmC-like protein VP_RS23205 PF01047 MarR family VP_RS23210 PF10417 C-terminal domain of 1-Cys peroxiredoxin VP_RS23210 PF00578 AhpC/TSA family VP_RS23215 PF07992 Pyridine nucleotide-disulphide oxidoreductase VP_RS23215 PF13192 Thioredoxin domain VP_RS23230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS23230 PF03466 LysR substrate binding domain VP_RS23235 PF01965 DJ-1/PfpI family VP_RS23235 PF12833 Helix-turn-helix domain VP_RS23240 PF08281 Sigma-70, region 4 VP_RS23240 PF04542 Sigma-70 region 2 VP_RS23250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VP_RS23250 PF00672 HAMP domain VP_RS23250 PF02743 Cache domain VP_RS23255 PF03466 LysR substrate binding domain VP_RS23255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS23260 PF02056 Family 4 glycosyl hydrolase VP_RS23260 PF11975 Family 4 glycosyl hydrolase C-terminal domain VP_RS23275 PF03473 MOSC domain VP_RS23275 PF03475 3-alpha domain VP_RS23280 PF00270 DEAD/DEAH box helicase VP_RS23280 PF00271 Helicase conserved C-terminal domain VP_RS23285 PF03786 D-mannonate dehydratase (UxuA) VP_RS23290 PF07729 FCD domain VP_RS23290 PF00392 Bacterial regulatory proteins, gntR family VP_RS23295 PF03480 Bacterial extracellular solute-binding protein, family 7 VP_RS23300 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VP_RS23305 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VP_RS23310 PF08125 Mannitol dehydrogenase C-terminal domain VP_RS23310 PF01232 Mannitol dehydrogenase Rossmann domain VP_RS23315 PF02614 Glucuronate isomerase VP_RS23320 PF00294 pfkB family carbohydrate kinase VP_RS23325 PF01081 KDPG and KHG aldolase VP_RS23330 PF10688 Bacterial inner membrane protein VP_RS23345 PF06719 AraC-type transcriptional regulator N-terminus VP_RS23345 PF12833 Helix-turn-helix domain VP_RS23355 PF00664 ABC transporter transmembrane region VP_RS23355 PF00005 ABC transporter VP_RS23365 PF01037 Lrp/AsnC ligand binding domain VP_RS23395 PF00474 Sodium:solute symporter family VP_RS23405 PF01619 Proline dehydrogenase VP_RS23405 PF14850 DNA-binding domain of Proline dehydrogenase VP_RS23405 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VP_RS23405 PF00171 Aldehyde dehydrogenase family VP_RS23410 PF12833 Helix-turn-helix domain VP_RS23420 PF01243 Pyridoxamine 5'-phosphate oxidase VP_RS23420 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VP_RS23425 PF00512 His Kinase A (phospho-acceptor) domain VP_RS23425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VP_RS23425 PF02743 Cache domain VP_RS23430 PF02954 Bacterial regulatory protein, Fis family VP_RS23430 PF00072 Response regulator receiver domain VP_RS23430 PF00158 Sigma-54 interaction domain VP_RS23435 PF00529 HlyD membrane-fusion protein of T1SS VP_RS23450 PF03412 Peptidase C39 family VP_RS23450 PF00005 ABC transporter VP_RS23450 PF00664 ABC transporter transmembrane region VP_RS23460 PF03358 NADPH-dependent FMN reductase VP_RS23465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VP_RS23470 PF00246 Zinc carboxypeptidase VP_RS23475 PF01418 Helix-turn-helix domain, rpiR family VP_RS23475 PF01380 SIS domain VP_RS23480 PF01380 SIS domain VP_RS23485 PF00367 phosphotransferase system, EIIB VP_RS23485 PF02378 Phosphotransferase system, EIIC VP_RS23490 PF00267 Gram-negative porin VP_RS23495 PF03575 Peptidase family S51 VP_RS23500 PF03466 LysR substrate binding domain VP_RS23500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VP_RS23505 PF00132 Bacterial transferase hexapeptide (six repeats) VP_RS23515 PF05127 Helicase VP_RS23515 PF13718 GNAT acetyltransferase 2 VP_RS23520 PF08775 ParB family VP_RS23520 PF02195 ParB-like nuclease domain VP_RS23525 PF18607 ParA helix turn helix domain VP_RS23525 PF13614 AAA domain