locus-tag class description DA442_RS00005 PF11638 DnaA N-terminal domain DA442_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix DA442_RS00005 PF00308 Bacterial dnaA protein DA442_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain DA442_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain DA442_RS00010 PF02767 DNA polymerase III beta subunit, central domain DA442_RS00015 PF02463 RecF/RecN/SMC N terminal domain DA442_RS00020 PF00204 DNA gyrase B DA442_RS00020 PF01751 Toprim domain DA442_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus DA442_RS00020 PF18053 DNA gyrase B subunit insert domain DA442_RS00040 PF00011 Hsp20/alpha crystallin family DA442_RS00045 PF00155 Aminotransferase class I and II DA442_RS00050 PF00128 Alpha amylase, catalytic domain DA442_RS00055 PF05746 DALR anticodon binding domain DA442_RS00055 PF02092 Glycyl-tRNA synthetase beta subunit DA442_RS00060 PF02091 Glycyl-tRNA synthetase alpha subunit DA442_RS00065 PF01169 Uncharacterized protein family UPF0016 DA442_RS00075 PF01206 Sulfurtransferase TusA DA442_RS00085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS00085 PF03466 LysR substrate binding domain DA442_RS00090 PF08240 Alcohol dehydrogenase GroES-like domain DA442_RS00090 PF00107 Zinc-binding dehydrogenase DA442_RS00095 PF02803 Thiolase, C-terminal domain DA442_RS00095 PF00108 Thiolase, N-terminal domain DA442_RS00100 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DA442_RS00100 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DA442_RS00100 PF00378 Enoyl-CoA hydratase/isomerase DA442_RS00105 PF01205 Uncharacterized protein family UPF0029 DA442_RS00105 PF09186 Domain of unknown function (DUF1949) DA442_RS00110 PF02386 Cation transport protein DA442_RS00115 PF12724 Flavodoxin domain DA442_RS00160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS00160 PF03466 LysR substrate binding domain DA442_RS00165 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DA442_RS00165 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DA442_RS00170 PF04380 Membrane fusogenic activity DA442_RS00180 PF00873 AcrB/AcrD/AcrF family DA442_RS00185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA442_RS00190 PF16295 Tetracyclin repressor-like, C-terminal domain DA442_RS00190 PF00440 Bacterial regulatory proteins, tetR family DA442_RS00195 PF13361 UvrD-like helicase C-terminal domain DA442_RS00195 PF00580 UvrD/REP helicase N-terminal domain DA442_RS00200 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DA442_RS00235 PF13419 Haloacid dehalogenase-like hydrolase DA442_RS00250 PF00005 ABC transporter DA442_RS00250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS00255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_RS00260 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS00265 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS00265 PF12911 N-terminal TM domain of oligopeptide transport permease C DA442_RS00300 PF00069 Protein kinase domain DA442_RS00305 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA442_RS00305 PF00356 Bacterial regulatory proteins, lacI family DA442_RS00310 PF03466 LysR substrate binding domain DA442_RS00310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS00315 PF00893 Small Multidrug Resistance protein DA442_RS00320 PF00893 Small Multidrug Resistance protein DA442_RS00325 PF00920 Dehydratase family DA442_RS00330 PF01202 Shikimate kinase DA442_RS00335 PF02447 GntP family permease DA442_RS00340 PF01081 KDPG and KHG aldolase DA442_RS00345 PF01048 Phosphorylase superfamily DA442_RS00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS00350 PF03466 LysR substrate binding domain DA442_RS00355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DA442_RS00355 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_RS00360 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DA442_RS00370 PF01432 Peptidase family M3 DA442_RS00375 PF01037 Lrp/AsnC ligand binding domain DA442_RS00380 PF08448 PAS fold DA442_RS00380 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS00380 PF00563 EAL domain DA442_RS00385 PF04445 Putative SAM-dependent methyltransferase DA442_RS00395 PF00892 EamA-like transporter family DA442_RS00400 PF00582 Universal stress protein family DA442_RS00405 PF00210 Ferritin-like domain DA442_RS00410 PF10625 Universal stress protein B (UspB) DA442_RS00420 PF01590 GAF domain DA442_RS00420 PF02954 Bacterial regulatory protein, Fis family DA442_RS00420 PF00158 Sigma-54 interaction domain DA442_RS00425 PF04972 BON domain DA442_RS00445 PF00781 Diacylglycerol kinase catalytic domain DA442_RS00475 PF01594 AI-2E family transporter DA442_RS00480 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS00480 PF03707 Bacterial signalling protein N terminal repeat DA442_RS00480 PF00563 EAL domain DA442_RS00490 PF02646 RmuC family DA442_RS00495 PF01209 ubiE/COQ5 methyltransferase family DA442_RS00500 PF02036 SCP-2 sterol transfer family DA442_RS00505 PF03109 ABC1 family DA442_RS00510 PF02416 mttA/Hcf106 family DA442_RS00515 PF02416 mttA/Hcf106 family DA442_RS00520 PF00902 Sec-independent protein translocase protein (TatC) DA442_RS00530 PF01026 TatD related DNase DA442_RS00540 PF00490 Delta-aminolevulinic acid dehydratase DA442_RS00555 PF00476 DNA polymerase family A DA442_RS00555 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DA442_RS00555 PF01367 5'-3' exonuclease, C-terminal SAM fold DA442_RS00555 PF01612 3'-5' exonuclease DA442_RS00565 PF01926 50S ribosome-binding GTPase DA442_RS00570 PF00034 Cytochrome c DA442_RS00590 PF04220 Der GTPase activator (YihI) DA442_RS00595 PF10675 Protein of unknown function (DUF2489) DA442_RS00600 PF04055 Radical SAM superfamily DA442_RS00600 PF06969 HemN C-terminal domain DA442_RS00605 PF00962 Adenosine/AMP deaminase DA442_RS00610 PF00563 EAL domain DA442_RS00610 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS00610 PF03707 Bacterial signalling protein N terminal repeat DA442_RS00615 PF02954 Bacterial regulatory protein, Fis family DA442_RS00615 PF00072 Response regulator receiver domain DA442_RS00615 PF00158 Sigma-54 interaction domain DA442_RS00620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS00620 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS00620 PF00989 PAS fold DA442_RS00630 PF03951 Glutamine synthetase, beta-Grasp domain DA442_RS00630 PF00120 Glutamine synthetase, catalytic domain DA442_RS00635 PF00679 Elongation factor G C-terminus DA442_RS00635 PF03144 Elongation factor Tu domain 2 DA442_RS00635 PF00009 Elongation factor Tu GTP binding domain DA442_RS00655 PF02580 D-Tyr-tRNA(Tyr) deacylase DA442_RS00660 PF00583 Acetyltransferase (GNAT) family DA442_RS00660 PF09500 Putative thioesterase (yiiD_Cterm) DA442_RS00670 PF01293 Phosphoenolpyruvate carboxykinase DA442_RS00675 PF01430 Hsp33 protein DA442_RS00680 PF01479 S4 domain DA442_RS00685 PF11356 Type II secretion system protein C DA442_RS00690 PF00263 Bacterial type II and III secretion system protein DA442_RS00690 PF03958 Bacterial type II/III secretion system short domain DA442_RS00695 PF00437 Type II/IV secretion system protein DA442_RS00700 PF00482 Type II secretion system (T2SS), protein F DA442_RS00705 PF07963 Prokaryotic N-terminal methylation motif DA442_RS00705 PF08334 Type II secretion system (T2SS), protein G DA442_RS00710 PF12019 Type II transport protein GspH DA442_RS00715 PF07963 Prokaryotic N-terminal methylation motif DA442_RS00715 PF02501 Type II secretion system (T2SS), protein I DA442_RS00720 PF11612 Type II secretion system (T2SS), protein J DA442_RS00720 PF07963 Prokaryotic N-terminal methylation motif DA442_RS00725 PF03934 Type II secretion system (T2SS), protein K DA442_RS00730 PF12693 GspL periplasmic domain DA442_RS00730 PF05134 Type II secretion system (T2SS), protein L DA442_RS00735 PF04612 Type II secretion system (T2SS), protein M DA442_RS00740 PF01203 Type II secretion system (T2SS), protein N DA442_RS00745 PF00459 Inositol monophosphatase family DA442_RS00750 PF00293 NUDIX domain DA442_RS00755 PF01521 Iron-sulphur cluster biosynthesis DA442_RS00755 PF01106 NifU-like domain DA442_RS00760 PF00156 Phosphoribosyl transferase domain DA442_RS00765 PF00561 alpha/beta hydrolase fold DA442_RS00775 PF16921 Tex protein YqgF-like domain DA442_RS00775 PF00575 S1 RNA binding domain DA442_RS00775 PF17674 HHH domain DA442_RS00775 PF09371 Tex-like protein N-terminal domain DA442_RS00785 PF01272 Transcription elongation factor, GreA/GreB, C-term DA442_RS00785 PF03449 Transcription elongation factor, N-terminal DA442_RS00795 PF00486 Transcriptional regulatory protein, C terminal DA442_RS00795 PF00072 Response regulator receiver domain DA442_RS00800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS00800 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS00800 PF00672 HAMP domain DA442_RS00805 PF00860 Permease family DA442_RS00815 PF17191 RecG wedge domain DA442_RS00815 PF00271 Helicase conserved C-terminal domain DA442_RS00815 PF00270 DEAD/DEAH box helicase DA442_RS00820 PF12105 SpoU, rRNA methylase, C-terminal DA442_RS00820 PF00588 SpoU rRNA Methylase family DA442_RS00825 PF02824 TGS domain DA442_RS00825 PF04607 Region found in RelA / SpoT proteins DA442_RS00825 PF13291 ACT domain DA442_RS00830 PF01192 RNA polymerase Rpb6 DA442_RS00835 PF00625 Guanylate kinase DA442_RS00850 PF02472 Biopolymer transport protein ExbD/TolR DA442_RS00855 PF01618 MotA/TolQ/ExbB proton channel family DA442_RS00870 PF07715 TonB-dependent Receptor Plug Domain DA442_RS00870 PF00593 TonB dependent receptor DA442_RS00880 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS00885 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS00885 PF12911 N-terminal TM domain of oligopeptide transport permease C DA442_RS00890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_RS00895 PF00005 ABC transporter DA442_RS00895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS00900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS00900 PF00005 ABC transporter DA442_RS00975 PF08340 Domain of unknown function (DUF1732) DA442_RS00975 PF03755 YicC-like family, N-terminal region DA442_RS00980 PF01138 3' exoribonuclease family, domain 1 DA442_RS00980 PF03725 3' exoribonuclease family, domain 2 DA442_RS00985 PF00156 Phosphoribosyl transferase domain DA442_RS00990 PF03279 Bacterial lipid A biosynthesis acyltransferase DA442_RS00995 PF00440 Bacterial regulatory proteins, tetR family DA442_RS01000 PF02441 Flavoprotein DA442_RS01000 PF04127 DNA / pantothenate metabolism flavoprotein DA442_RS01010 PF00672 HAMP domain DA442_RS01010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS01010 PF17200 Single Cache domain 2 DA442_RS01015 PF04002 RadC-like JAB domain DA442_RS01020 PF00830 Ribosomal L28 family DA442_RS01025 PF00471 Ribosomal protein L33 DA442_RS01030 PF00884 Sulfatase DA442_RS01040 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DA442_RS01040 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DA442_RS01040 PF06827 Zinc finger found in FPG and IleRS DA442_RS01045 PF01467 Cytidylyltransferase-like DA442_RS01050 PF05686 Glycosyl transferase family 90 DA442_RS01055 PF00535 Glycosyl transferase family 2 DA442_RS01060 PF00535 Glycosyl transferase family 2 DA442_RS01065 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DA442_RS01070 PF01219 Prokaryotic diacylglycerol kinase DA442_RS01080 PF02719 Polysaccharide biosynthesis protein DA442_RS01085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DA442_RS01090 PF02350 UDP-N-acetylglucosamine 2-epimerase DA442_RS01105 PF00483 Nucleotidyl transferase DA442_RS01110 PF02348 Cytidylyltransferase DA442_RS01110 PF13472 GDSL-like Lipase/Acylhydrolase family DA442_RS01120 PF00202 Aminotransferase class-III DA442_RS01125 PF00795 Carbon-nitrogen hydrolase DA442_RS01150 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DA442_RS01155 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DA442_RS01160 PF03279 Bacterial lipid A biosynthesis acyltransferase DA442_RS01165 PF01370 NAD dependent epimerase/dehydratase family DA442_RS01170 PF06082 Exopolysaccharide biosynthesis protein YbjH DA442_RS01245 PF01531 Glycosyl transferase family 11 DA442_RS01260 PF00534 Glycosyl transferases group 1 DA442_RS01260 PF13439 Glycosyltransferase Family 4 DA442_RS01265 PF16363 GDP-mannose 4,6 dehydratase DA442_RS01270 PF01370 NAD dependent epimerase/dehydratase family DA442_RS01275 PF00293 NUDIX domain DA442_RS01280 PF00483 Nucleotidyl transferase DA442_RS01280 PF01050 Mannose-6-phosphate isomerase DA442_RS01285 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DA442_RS01285 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DA442_RS01285 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DA442_RS01285 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DA442_RS01290 PF01238 Phosphomannose isomerase type I DA442_RS01300 PF01370 NAD dependent epimerase/dehydratase family DA442_RS01305 PF02397 Bacterial sugar transferase DA442_RS01310 PF02719 Polysaccharide biosynthesis protein DA442_RS01315 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DA442_RS01315 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DA442_RS01315 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DA442_RS01320 PF01370 NAD dependent epimerase/dehydratase family DA442_RS01325 PF00753 Metallo-beta-lactamase superfamily DA442_RS01325 PF10996 Beta-Casp domain DA442_RS01325 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DA442_RS01330 PF00121 Triosephosphate isomerase DA442_RS01350 PF08220 DeoR-like helix-turn-helix domain DA442_RS01350 PF00455 DeoR C terminal sensor domain DA442_RS01355 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DA442_RS01365 PF06005 Cell division protein ZapB DA442_RS01370 PF03737 Aldolase/RraA DA442_RS01375 PF01040 UbiA prenyltransferase family DA442_RS01380 PF00004 ATPase family associated with various cellular activities (AAA) DA442_RS01380 PF07724 AAA domain (Cdc48 subfamily) DA442_RS01385 PF00227 Proteasome subunit DA442_RS01395 PF00356 Bacterial regulatory proteins, lacI family DA442_RS01400 PF18074 Primosomal protein N C-terminal domain DA442_RS01400 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DA442_RS01400 PF00270 DEAD/DEAH box helicase DA442_RS01400 PF17764 3′ DNA-binding domain (3′BD) DA442_RS01400 PF00271 Helicase conserved C-terminal domain DA442_RS01410 PF01197 Ribosomal protein L31 DA442_RS01415 PF00338 Ribosomal protein S10p/S20e DA442_RS01420 PF00297 Ribosomal protein L3 DA442_RS01425 PF00573 Ribosomal protein L4/L1 family DA442_RS01430 PF00276 Ribosomal protein L23 DA442_RS01435 PF03947 Ribosomal Proteins L2, C-terminal domain DA442_RS01435 PF00181 Ribosomal Proteins L2, RNA binding domain DA442_RS01440 PF00203 Ribosomal protein S19 DA442_RS01445 PF00237 Ribosomal protein L22p/L17e DA442_RS01450 PF00189 Ribosomal protein S3, C-terminal domain DA442_RS01450 PF07650 KH domain DA442_RS01455 PF00252 Ribosomal protein L16p/L10e DA442_RS01460 PF00831 Ribosomal L29 protein DA442_RS01465 PF00366 Ribosomal protein S17 DA442_RS01470 PF00238 Ribosomal protein L14p/L23e DA442_RS01475 PF00467 KOW motif DA442_RS01475 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DA442_RS01480 PF00673 ribosomal L5P family C-terminus DA442_RS01480 PF00281 Ribosomal protein L5 DA442_RS01485 PF00253 Ribosomal protein S14p/S29e DA442_RS01490 PF00410 Ribosomal protein S8 DA442_RS01495 PF00347 Ribosomal protein L6 DA442_RS01500 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DA442_RS01505 PF00333 Ribosomal protein S5, N-terminal domain DA442_RS01505 PF03719 Ribosomal protein S5, C-terminal domain DA442_RS01510 PF00327 Ribosomal protein L30p/L7e DA442_RS01515 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DA442_RS01520 PF00344 SecY translocase DA442_RS01525 PF00444 Ribosomal protein L36 DA442_RS01530 PF00416 Ribosomal protein S13/S18 DA442_RS01535 PF00411 Ribosomal protein S11 DA442_RS01540 PF00163 Ribosomal protein S4/S9 N-terminal domain DA442_RS01540 PF01479 S4 domain DA442_RS01545 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DA442_RS01545 PF01000 RNA polymerase Rpb3/RpoA insert domain DA442_RS01545 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DA442_RS01550 PF01196 Ribosomal protein L17 DA442_RS01560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA442_RS01560 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DA442_RS01570 PF13673 Acetyltransferase (GNAT) domain DA442_RS01575 PF00270 DEAD/DEAH box helicase DA442_RS01575 PF03880 DbpA RNA binding domain DA442_RS01575 PF00271 Helicase conserved C-terminal domain DA442_RS01585 PF02872 5'-nucleotidase, C-terminal domain DA442_RS01585 PF00149 Calcineurin-like phosphoesterase DA442_RS01590 PF10414 Sirohaem synthase dimerisation region DA442_RS01590 PF14824 Sirohaem biosynthesis protein central DA442_RS01590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA442_RS01595 PF01507 Phosphoadenosine phosphosulfate reductase family DA442_RS01600 PF00009 Elongation factor Tu GTP binding domain DA442_RS01610 PF02080 TrkA-C domain DA442_RS01610 PF03600 Citrate transporter DA442_RS01635 PF00005 ABC transporter DA442_RS01645 PF10795 Protein of unknown function (DUF2607) DA442_RS01655 PF06526 Protein of unknown function (DUF1107) DA442_RS01660 PF01625 Peptide methionine sulfoxide reductase DA442_RS01670 PF04357 TamB, inner membrane protein subunit of TAM complex DA442_RS01675 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like DA442_RS01685 PF00719 Inorganic pyrophosphatase DA442_RS01690 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DA442_RS01700 PF08245 Mur ligase middle domain DA442_RS01700 PF01225 Mur ligase family, catalytic domain DA442_RS01700 PF02875 Mur ligase family, glutamate ligase domain DA442_RS01705 PF02441 Flavoprotein DA442_RS01715 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS01720 PF00005 ABC transporter DA442_RS01740 PF16868 NMT1-like family DA442_RS01750 PF02863 Arginine repressor, C-terminal domain DA442_RS01750 PF01316 Arginine repressor, DNA binding domain DA442_RS01755 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DA442_RS01755 PF00056 lactate/malate dehydrogenase, NAD binding domain DA442_RS01765 PF00348 Polyprenyl synthetase DA442_RS01770 PF00829 Ribosomal prokaryotic L21 protein DA442_RS01775 PF01016 Ribosomal L27 protein DA442_RS01780 PF01926 50S ribosome-binding GTPase DA442_RS01780 PF01018 GTP1/OBG DA442_RS01785 PF06738 Putative threonine/serine exporter DA442_RS01790 PF12821 Threonine/Serine exporter, ThrE DA442_RS01795 PF00186 Dihydrofolate reductase DA442_RS01800 PF00149 Calcineurin-like phosphoesterase DA442_RS01805 PF04379 ApaG domain DA442_RS01810 PF00398 Ribosomal RNA adenine dimethylase DA442_RS01815 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DA442_RS01820 PF09312 SurA N-terminal domain DA442_RS01825 PF03968 OstA-like protein DA442_RS01825 PF04453 LPS transport system D DA442_RS01830 PF00226 DnaJ domain DA442_RS01830 PF05099 Tellurite resistance protein TerB DA442_RS01840 PF00694 Aconitase C-terminal domain DA442_RS01845 PF00330 Aconitase family (aconitate hydratase) DA442_RS01850 PF00180 Isocitrate/isopropylmalate dehydrogenase DA442_RS01855 PF08502 LeuA allosteric (dimerisation) domain DA442_RS01855 PF00682 HMGL-like DA442_RS01870 PF01569 PAP2 superfamily DA442_RS01880 PF03466 LysR substrate binding domain DA442_RS01880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS01885 PF00501 AMP-binding enzyme DA442_RS01890 PF00205 Thiamine pyrophosphate enzyme, central domain DA442_RS01890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA442_RS01890 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA442_RS01895 PF10369 Small subunit of acetolactate synthase DA442_RS01900 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS01910 PF00224 Pyruvate kinase, barrel domain DA442_RS01910 PF02887 Pyruvate kinase, alpha/beta domain DA442_RS01920 PF08220 DeoR-like helix-turn-helix domain DA442_RS01920 PF00455 DeoR C terminal sensor domain DA442_RS01925 PF01380 SIS domain DA442_RS01935 PF00486 Transcriptional regulatory protein, C terminal DA442_RS01935 PF00072 Response regulator receiver domain DA442_RS01940 PF00672 HAMP domain DA442_RS01940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS01940 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS01945 PF13419 Haloacid dehalogenase-like hydrolase DA442_RS01950 PF05068 Mannitol repressor DA442_RS01955 PF08125 Mannitol dehydrogenase C-terminal domain DA442_RS01955 PF01232 Mannitol dehydrogenase Rossmann domain DA442_RS01960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA442_RS01960 PF02378 Phosphotransferase system, EIIC DA442_RS01960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA442_RS01995 PF12833 Helix-turn-helix domain DA442_RS02005 PF03180 NLPA lipoprotein DA442_RS02010 PF14659 Phage integrase, N-terminal SAM-like domain DA442_RS02010 PF00589 Phage integrase family DA442_RS02010 PF13356 Arm DNA-binding domain DA442_RS02080 PF04546 Sigma-70, non-essential region DA442_RS02080 PF03979 Sigma-70 factor, region 1.1 DA442_RS02080 PF00140 Sigma-70 factor, region 1.2 DA442_RS02080 PF04542 Sigma-70 region 2 DA442_RS02080 PF04539 Sigma-70 region 3 DA442_RS02080 PF04545 Sigma-70, region 4 DA442_RS02085 PF10410 DnaB-helicase binding domain of primase DA442_RS02085 PF08278 DNA primase DnaG DnaB-binding DA442_RS02085 PF08275 DNA primase catalytic core, N-terminal domain DA442_RS02085 PF01807 CHC2 zinc finger DA442_RS02090 PF09424 Yqey-like protein DA442_RS02095 PF01165 Ribosomal protein S21 DA442_RS02100 PF00814 Glycoprotease family DA442_RS02105 PF12697 Alpha/beta hydrolase family DA442_RS02110 PF02660 Glycerol-3-phosphate acyltransferase DA442_RS02115 PF02152 Dihydroneopterin aldolase DA442_RS02120 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DA442_RS02125 PF02673 Bacitracin resistance protein BacA DA442_RS02130 PF01743 Poly A polymerase head domain DA442_RS02130 PF12627 Probable RNA and SrmB- binding site of polymerase A DA442_RS02130 PF01966 HD domain DA442_RS02135 PF01471 Putative peptidoglycan binding domain DA442_RS02135 PF13401 AAA domain DA442_RS02145 PF08239 Bacterial SH3 domain DA442_RS02150 PF01384 Phosphate transporter family DA442_RS02155 PF01865 Protein of unknown function DUF47 DA442_RS02160 PF01928 CYTH domain DA442_RS02170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS02170 PF00672 HAMP domain DA442_RS02175 PF08335 GlnD PII-uridylyltransferase DA442_RS02175 PF03710 Glutamate-ammonia ligase adenylyltransferase DA442_RS02180 PF01467 Cytidylyltransferase-like DA442_RS02180 PF00294 pfkB family carbohydrate kinase DA442_RS02185 PF02321 Outer membrane efflux protein DA442_RS02190 PF00293 NUDIX domain DA442_RS02195 PF06853 Protein of unknown function (DUF1249) DA442_RS02200 PF00149 Calcineurin-like phosphoesterase DA442_RS02205 PF05728 Uncharacterised protein family (UPF0227) DA442_RS02210 PF00204 DNA gyrase B DA442_RS02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS02210 PF00986 DNA gyrase B subunit, carboxyl terminus DA442_RS02210 PF01751 Toprim domain DA442_RS02215 PF03989 DNA gyrase C-terminal domain, beta-propeller DA442_RS02215 PF00521 DNA gyrase/topoisomerase IV, subunit A DA442_RS02220 PF13180 PDZ domain DA442_RS02225 PF00595 PDZ domain DA442_RS02230 PF06295 Protein of unknown function (DUF1043) DA442_RS02240 PF03969 AFG1-like ATPase DA442_RS02250 PF00572 Ribosomal protein L13 DA442_RS02255 PF00380 Ribosomal protein S9/S16 DA442_RS02260 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DA442_RS02260 PF00355 Rieske [2Fe-2S] domain DA442_RS02265 PF00032 Cytochrome b(C-terminal)/b6/petD DA442_RS02265 PF00033 Cytochrome b/b6/petB DA442_RS02270 PF02167 Cytochrome C1 family DA442_RS02275 PF02798 Glutathione S-transferase, N-terminal domain DA442_RS02275 PF00043 Glutathione S-transferase, C-terminal domain DA442_RS02280 PF04386 Stringent starvation protein B DA442_RS02285 PF04972 BON domain DA442_RS02290 PF13580 SIS domain DA442_RS02295 PF02021 Uncharacterised protein family UPF0102 DA442_RS02300 PF04348 LppC putative lipoprotein DA442_RS02305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA442_RS02320 PF01795 MraW methylase family DA442_RS02325 PF04999 Cell division protein FtsL DA442_RS02330 PF00905 Penicillin binding protein transpeptidase domain DA442_RS02330 PF03717 Penicillin-binding Protein dimerisation domain DA442_RS02335 PF01225 Mur ligase family, catalytic domain DA442_RS02335 PF08245 Mur ligase middle domain DA442_RS02335 PF02875 Mur ligase family, glutamate ligase domain DA442_RS02340 PF08245 Mur ligase middle domain DA442_RS02340 PF01225 Mur ligase family, catalytic domain DA442_RS02340 PF02875 Mur ligase family, glutamate ligase domain DA442_RS02345 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DA442_RS02345 PF00953 Glycosyl transferase family 4 DA442_RS02350 PF02875 Mur ligase family, glutamate ligase domain DA442_RS02350 PF08245 Mur ligase middle domain DA442_RS02355 PF01098 Cell cycle protein DA442_RS02360 PF04101 Glycosyltransferase family 28 C-terminal domain DA442_RS02360 PF03033 Glycosyltransferase family 28 N-terminal domain DA442_RS02365 PF02875 Mur ligase family, glutamate ligase domain DA442_RS02365 PF01225 Mur ligase family, catalytic domain DA442_RS02365 PF08245 Mur ligase middle domain DA442_RS02370 PF08478 POTRA domain, FtsQ-type DA442_RS02370 PF03799 Cell division protein FtsQ DA442_RS02375 PF02491 SHS2 domain inserted in FTSA DA442_RS02380 PF00091 Tubulin/FtsZ family, GTPase domain DA442_RS02380 PF12327 FtsZ family, C-terminal domain DA442_RS02385 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DA442_RS02395 PF02810 SEC-C motif DA442_RS02395 PF01043 SecA preprotein cross-linking domain DA442_RS02395 PF07517 SecA DEAD-like domain DA442_RS02395 PF07516 SecA Wing and Scaffold domain DA442_RS02400 PF00293 NUDIX domain DA442_RS02405 PF01113 Dihydrodipicolinate reductase, N-terminus DA442_RS02405 PF05173 Dihydrodipicolinate reductase, C-terminus DA442_RS02410 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DA442_RS02410 PF00117 Glutamine amidotransferase class-I DA442_RS02415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DA442_RS02415 PF02142 MGS-like domain DA442_RS02415 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DA442_RS02430 PF01925 Sulfite exporter TauE/SafE DA442_RS02435 PF03466 LysR substrate binding domain DA442_RS02435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS02440 PF03458 UPF0126 domain DA442_RS02445 PF01497 Periplasmic binding protein DA442_RS02450 PF17113 Regulatory signalling modulator protein AmpE DA442_RS02450 PF03186 CobD/Cbib protein DA442_RS02455 PF01048 Phosphorylase superfamily DA442_RS02465 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DA442_RS02465 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_RS02470 PF01645 Conserved region in glutamate synthase DA442_RS02470 PF01493 GXGXG motif DA442_RS02470 PF00310 Glutamine amidotransferases class-II DA442_RS02470 PF04898 Glutamate synthase central domain DA442_RS02475 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DA442_RS02475 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_RS02480 PF01493 GXGXG motif DA442_RS02480 PF00310 Glutamine amidotransferases class-II DA442_RS02480 PF04898 Glutamate synthase central domain DA442_RS02480 PF01645 Conserved region in glutamate synthase DA442_RS02485 PF04055 Radical SAM superfamily DA442_RS02485 PF16199 Radical_SAM C-terminal domain DA442_RS02490 PF01590 GAF domain DA442_RS02490 PF00563 EAL domain DA442_RS02490 PF00360 Phytochrome region DA442_RS02490 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS02495 PF00072 Response regulator receiver domain DA442_RS02495 PF01627 Hpt domain DA442_RS02495 PF18415 Histidine kinase receptor ArcB trans-membrane domain DA442_RS02495 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS02495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS02495 PF00989 PAS fold DA442_RS02505 PF00072 Response regulator receiver domain DA442_RS02505 PF00486 Transcriptional regulatory protein, C terminal DA442_RS02520 PF03737 Aldolase/RraA DA442_RS02530 PF03447 Homoserine dehydrogenase, NAD binding domain DA442_RS02530 PF00742 Homoserine dehydrogenase DA442_RS02530 PF13840 ACT domain DA442_RS02530 PF01842 ACT domain DA442_RS02530 PF00696 Amino acid kinase family DA442_RS02535 PF08544 GHMP kinases C terminal DA442_RS02535 PF00288 GHMP kinases N terminal domain DA442_RS02540 PF00291 Pyridoxal-phosphate dependent enzyme DA442_RS02540 PF14821 Threonine synthase N terminus DA442_RS02545 PF01228 Glycine radical DA442_RS02550 PF01261 Xylose isomerase-like TIM barrel DA442_RS02560 PF03167 Uracil DNA glycosylase superfamily DA442_RS02575 PF01235 Sodium:alanine symporter family DA442_RS02580 PF03883 Peroxide stress protein YaaA DA442_RS02585 PF00271 Helicase conserved C-terminal domain DA442_RS02585 PF00270 DEAD/DEAH box helicase DA442_RS02590 PF05175 Methyltransferase small domain DA442_RS02595 PF05525 Branched-chain amino acid transport protein DA442_RS02600 PF00258 Flavodoxin DA442_RS02605 PF02899 Phage integrase, N-terminal SAM-like domain DA442_RS02605 PF00589 Phage integrase family DA442_RS02610 PF10411 Disulfide bond isomerase protein N-terminus DA442_RS02610 PF13098 Thioredoxin-like domain DA442_RS02615 PF02272 DHHA1 domain DA442_RS02615 PF01368 DHH family DA442_RS02615 PF17768 RecJ OB domain DA442_RS02625 PF01336 OB-fold nucleic acid binding domain DA442_RS02625 PF00152 tRNA synthetases class II (D, K and N) DA442_RS02630 PF00072 Response regulator receiver domain DA442_RS02630 PF02954 Bacterial regulatory protein, Fis family DA442_RS02630 PF00158 Sigma-54 interaction domain DA442_RS02650 PF02976 DNA mismatch repair enzyme MutH DA442_RS02660 PF00293 NUDIX domain DA442_RS02675 PF01790 Prolipoprotein diacylglyceryl transferase DA442_RS02680 PF00303 Thymidylate synthase DA442_RS02690 PF02690 Na+/Pi-cotransporter DA442_RS02695 PF03466 LysR substrate binding domain DA442_RS02695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS02705 PF01022 Bacterial regulatory protein, arsR family DA442_RS02715 PF01649 Ribosomal protein S20 DA442_RS02720 PF03023 Lipid II flippase MurJ DA442_RS02725 PF01687 Riboflavin kinase DA442_RS02725 PF06574 FAD synthetase DA442_RS02730 PF06827 Zinc finger found in FPG and IleRS DA442_RS02730 PF08264 Anticodon-binding domain of tRNA DA442_RS02730 PF00133 tRNA synthetases class I (I, L, M and V) DA442_RS02735 PF01252 Signal peptidase (SPase) II DA442_RS02740 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA442_RS02745 PF02401 LytB protein DA442_RS02750 PF04397 LytTr DNA-binding domain DA442_RS02750 PF00072 Response regulator receiver domain DA442_RS02755 PF07694 5TMR of 5TMR-LYT DA442_RS02755 PF06580 Histidine kinase DA442_RS02760 PF02554 Carbon starvation protein CstA DA442_RS02775 PF13580 SIS domain DA442_RS02785 PF00933 Glycosyl hydrolase family 3 N terminal domain DA442_RS02790 PF00793 DAHP synthetase I family DA442_RS02795 PF02153 Prephenate dehydrogenase DA442_RS02795 PF01817 Chorismate mutase type II DA442_RS02800 PF01551 Peptidase family M23 DA442_RS02800 PF04225 Opacity-associated protein A LysM-like domain DA442_RS02805 PF07238 PilZ domain DA442_RS02820 PF01464 Transglycosylase SLT domain DA442_RS02820 PF14718 Soluble lytic murein transglycosylase L domain DA442_RS02825 PF01371 Trp repressor protein DA442_RS02830 PF01931 Protein of unknown function DUF84 DA442_RS02835 PF00800 Prephenate dehydratase DA442_RS02835 PF01817 Chorismate mutase type II DA442_RS02840 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DA442_RS02845 PF01464 Transglycosylase SLT domain DA442_RS02850 PF13525 Outer membrane lipoprotein DA442_RS02855 PF01479 S4 domain DA442_RS02855 PF00849 RNA pseudouridylate synthase DA442_RS02860 PF02578 Multi-copper polyphenol oxidoreductase laccase DA442_RS02865 PF02861 Clp amino terminal domain, pathogenicity island component DA442_RS02865 PF00004 ATPase family associated with various cellular activities (AAA) DA442_RS02865 PF10431 C-terminal, D2-small domain, of ClpB protein DA442_RS02865 PF17871 AAA lid domain DA442_RS02865 PF07724 AAA domain (Cdc48 subfamily) DA442_RS02915 PF03411 Penicillin-insensitive murein endopeptidase DA442_RS02925 PF00037 4Fe-4S binding domain DA442_RS02930 PF16325 Peptidase family U32 C-terminal domain DA442_RS02930 PF01136 Peptidase family U32 DA442_RS02935 PF04381 Putative exonuclease, RdgC DA442_RS02945 PF00486 Transcriptional regulatory protein, C terminal DA442_RS02945 PF00072 Response regulator receiver domain DA442_RS02950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS02950 PF11808 Phosphate regulon sensor protein PhoR DA442_RS02950 PF00989 PAS fold DA442_RS02950 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS02955 PF12849 PBP superfamily domain DA442_RS02960 PF02541 Ppx/GppA phosphatase family DA442_RS02965 PF02503 Polyphosphate kinase middle domain DA442_RS02965 PF13090 Polyphosphate kinase C-terminal domain 2 DA442_RS02965 PF17941 Polyphosphate kinase C-terminal domain 1 DA442_RS02965 PF13089 Polyphosphate kinase N-terminal domain DA442_RS02975 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS02980 PF00005 ABC transporter DA442_RS02985 PF01895 PhoU domain DA442_RS02990 PF03976 Polyphosphate kinase 2 (PPK2) DA442_RS02995 PF03932 CutC family DA442_RS03005 PF10417 C-terminal domain of 1-Cys peroxiredoxin DA442_RS03005 PF00578 AhpC/TSA family DA442_RS03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS03010 PF03466 LysR substrate binding domain DA442_RS03020 PF01274 Malate synthase DA442_RS03025 PF00463 Isocitrate lyase family DA442_RS03030 PF00571 CBS domain DA442_RS03045 PF02547 Queuosine biosynthesis protein DA442_RS03050 PF01702 Queuine tRNA-ribosyltransferase DA442_RS03055 PF02699 Preprotein translocase subunit DA442_RS03060 PF02355 Protein export membrane protein DA442_RS03060 PF13721 SecD export protein N-terminal TM region DA442_RS03060 PF07549 SecD/SecF GG Motif DA442_RS03065 PF02355 Protein export membrane protein DA442_RS03065 PF07549 SecD/SecF GG Motif DA442_RS03075 PF00459 Inositol monophosphatase family DA442_RS03080 PF00588 SpoU rRNA Methylase family DA442_RS03085 PF02082 Transcriptional regulator DA442_RS03090 PF00266 Aminotransferase class-V DA442_RS03095 PF01592 NifU-like N terminal domain DA442_RS03100 PF01521 Iron-sulphur cluster biosynthesis DA442_RS03105 PF07743 HSCB C-terminal oligomerisation domain DA442_RS03105 PF00226 DnaJ domain DA442_RS03110 PF00012 Hsp70 protein DA442_RS03115 PF00111 2Fe-2S iron-sulfur cluster binding domain DA442_RS03120 PF04384 Iron-sulphur cluster assembly DA442_RS03125 PF00883 Cytosol aminopeptidase family, catalytic domain DA442_RS03125 PF12404 Peptidase DA442_RS03130 PF00334 Nucleoside diphosphate kinase DA442_RS03135 PF04055 Radical SAM superfamily DA442_RS03145 PF13464 Domain of unknown function (DUF4115) DA442_RS03150 PF04551 GcpE protein DA442_RS03155 PF13393 Histidyl-tRNA synthetase DA442_RS03155 PF03129 Anticodon binding domain DA442_RS03160 PF09976 Tetratricopeptide repeat-like domain DA442_RS03165 PF13360 PQQ-like domain DA442_RS03170 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DA442_RS03170 PF01926 50S ribosome-binding GTPase DA442_RS03185 PF02601 Exonuclease VII, large subunit DA442_RS03185 PF13742 OB-fold nucleic acid binding domain DA442_RS03190 PF00571 CBS domain DA442_RS03190 PF00478 IMP dehydrogenase / GMP reductase domain DA442_RS03195 PF00958 GMP synthase C terminal domain DA442_RS03195 PF02540 NAD synthase DA442_RS03195 PF00117 Glutamine amidotransferase class-I DA442_RS03200 PF03553 Na+/H+ antiporter family DA442_RS03205 PF06483 Chitinase C DA442_RS03205 PF00704 Glycosyl hydrolases family 18 DA442_RS03210 PF01184 GPR1/FUN34/yaaH family DA442_RS03220 PF01235 Sodium:alanine symporter family DA442_RS03225 PF01266 FAD dependent oxidoreductase DA442_RS03230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS03230 PF03466 LysR substrate binding domain DA442_RS03250 PF07969 Amidohydrolase family DA442_RS03260 PF01053 Cys/Met metabolism PLP-dependent enzyme DA442_RS03265 PF00202 Aminotransferase class-III DA442_RS03285 PF00583 Acetyltransferase (GNAT) family DA442_RS03285 PF00795 Carbon-nitrogen hydrolase DA442_RS03290 PF03466 LysR substrate binding domain DA442_RS03290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS03310 PF01668 SmpB protein DA442_RS03315 PF03364 Polyketide cyclase / dehydrase and lipid transport DA442_RS03320 PF03658 RnfH family Ubiquitin DA442_RS03325 PF04355 SmpA / OmlA family DA442_RS03330 PF02463 RecF/RecN/SMC N terminal domain DA442_RS03340 PF01513 ATP-NAD kinase DA442_RS03345 PF01025 GrpE DA442_RS03350 PF00375 Sodium:dicarboxylate symporter family DA442_RS03355 PF00012 Hsp70 protein DA442_RS03360 PF01556 DnaJ C terminal domain DA442_RS03360 PF00684 DnaJ central domain DA442_RS03360 PF00226 DnaJ domain DA442_RS03370 PF00114 Pilin (bacterial filament) DA442_RS03370 PF07963 Prokaryotic N-terminal methylation motif DA442_RS03375 PF00114 Pilin (bacterial filament) DA442_RS03375 PF07963 Prokaryotic N-terminal methylation motif DA442_RS03400 PF03806 AbgT putative transporter family DA442_RS03405 PF14437 MafB19-like deaminase DA442_RS03415 PF01464 Transglycosylase SLT domain DA442_RS03415 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_RS03420 PF02769 AIR synthase related protein, C-terminal domain DA442_RS03420 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DA442_RS03420 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DA442_RS03445 PF01546 Peptidase family M20/M25/M40 DA442_RS03445 PF07687 Peptidase dimerisation domain DA442_RS03450 PF00860 Permease family DA442_RS03455 PF00156 Phosphoribosyl transferase domain DA442_RS03460 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) DA442_RS03465 PF07417 Sigma factor-binding transcriptional regulator Crl DA442_RS03470 PF00696 Amino acid kinase family DA442_RS03470 PF01472 PUA domain DA442_RS03475 PF00171 Aldehyde dehydrogenase family DA442_RS03480 PF03477 ATP cone domain DA442_RS03485 PF01872 RibD C-terminal domain DA442_RS03485 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DA442_RS03490 PF00677 Lumazine binding domain DA442_RS03495 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DA442_RS03495 PF00925 GTP cyclohydrolase II DA442_RS03500 PF00885 6,7-dimethyl-8-ribityllumazine synthase DA442_RS03505 PF01029 NusB family DA442_RS03510 PF02769 AIR synthase related protein, C-terminal domain DA442_RS03510 PF00586 AIR synthase related protein, N-terminal domain DA442_RS03515 PF04608 Phosphatidylglycerophosphatase A DA442_RS03520 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DA442_RS03520 PF02779 Transketolase, pyrimidine binding domain DA442_RS03520 PF02780 Transketolase, C-terminal domain DA442_RS03525 PF00348 Polyprenyl synthetase DA442_RS03530 PF02609 Exonuclease VII small subunit DA442_RS03535 PF01618 MotA/TolQ/ExbB proton channel family DA442_RS03540 PF00691 OmpA family DA442_RS03545 PF02568 Thiamine biosynthesis protein (ThiI) DA442_RS03545 PF02926 THUMP domain DA442_RS03550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS03550 PF03466 LysR substrate binding domain DA442_RS03560 PF04241 Protein of unknown function (DUF423) DA442_RS03565 PF18125 RlmM ferredoxin-like domain DA442_RS03565 PF01728 FtsJ-like methyltransferase DA442_RS03575 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DA442_RS03575 PF01367 5'-3' exonuclease, C-terminal SAM fold DA442_RS03580 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DA442_RS03580 PF11892 Domain of unknown function (DUF3412) DA442_RS03580 PF03641 Possible lysine decarboxylase DA442_RS03585 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS03595 PF14489 QueF-like protein DA442_RS03595 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DA442_RS03600 PF07348 Syd protein (SUKH-2) DA442_RS03605 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) DA442_RS03610 PF03180 NLPA lipoprotein DA442_RS03615 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS03620 PF00005 ABC transporter DA442_RS03620 PF09383 NIL domain DA442_RS03635 PF00356 Bacterial regulatory proteins, lacI family DA442_RS03640 PF02378 Phosphotransferase system, EIIC DA442_RS03640 PF00367 phosphotransferase system, EIIB DA442_RS03645 PF16657 Maltogenic Amylase, C-terminal domain DA442_RS03645 PF00128 Alpha amylase, catalytic domain DA442_RS03660 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DA442_RS03660 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DA442_RS03665 PF00464 Serine hydroxymethyltransferase DA442_RS03670 PF04055 Radical SAM superfamily DA442_RS03670 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DA442_RS03675 PF03099 Biotin/lipoate A/B protein ligase family DA442_RS03680 PF04359 Protein of unknown function (DUF493) DA442_RS03685 PF07943 Penicillin-binding protein 5, C-terminal domain DA442_RS03685 PF00768 D-alanyl-D-alanine carboxypeptidase DA442_RS03690 PF05036 Sporulation related domain DA442_RS03690 PF03330 Lytic transglycolase DA442_RS03695 PF01098 Cell cycle protein DA442_RS03700 PF00905 Penicillin binding protein transpeptidase domain DA442_RS03700 PF03717 Penicillin-binding Protein dimerisation domain DA442_RS03705 PF02590 Predicted SPOUT methyltransferase DA442_RS03715 PF06144 DNA polymerase III, delta subunit DA442_RS03715 PF14840 Processivity clamp loader gamma complex DNA pol III C-term DA442_RS03720 PF04390 Lipopolysaccharide-assembly DA442_RS03725 PF08264 Anticodon-binding domain of tRNA DA442_RS03725 PF00133 tRNA synthetases class I (I, L, M and V) DA442_RS03725 PF13603 Leucyl-tRNA synthetase, Domain 2 DA442_RS03730 PF07295 Zinc-ribbon containing domain DA442_RS03735 PF00795 Carbon-nitrogen hydrolase DA442_RS03740 PF00571 CBS domain DA442_RS03740 PF03471 Transporter associated domain DA442_RS03745 PF02130 Uncharacterized protein family UPF0054 DA442_RS03750 PF02562 PhoH-like protein DA442_RS03755 PF00919 Uncharacterized protein family UPF0004 DA442_RS03755 PF04055 Radical SAM superfamily DA442_RS03755 PF01938 TRAM domain DA442_RS03765 PF01494 FAD binding domain DA442_RS03880 PF06071 Protein of unknown function (DUF933) DA442_RS03880 PF01926 50S ribosome-binding GTPase DA442_RS03885 PF01195 Peptidyl-tRNA hydrolase DA442_RS03890 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DA442_RS03890 PF14572 Phosphoribosyl synthetase-associated domain DA442_RS03895 PF08544 GHMP kinases C terminal DA442_RS03895 PF00288 GHMP kinases N terminal domain DA442_RS03900 PF03550 Outer membrane lipoprotein LolB DA442_RS03905 PF01488 Shikimate / quinate 5-dehydrogenase DA442_RS03905 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DA442_RS03905 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DA442_RS03910 PF00472 RF-1 domain DA442_RS03910 PF03462 PCRF domain DA442_RS03915 PF17827 PrmC N-terminal domain DA442_RS03915 PF13847 Methyltransferase domain DA442_RS03920 PF04247 Invasion gene expression up-regulator, SirB DA442_RS03925 PF13369 Transglutaminase-like superfamily DA442_RS03930 PF00793 DAHP synthetase I family DA442_RS03935 PF00149 Calcineurin-like phosphoesterase DA442_RS03935 PF02872 5'-nucleotidase, C-terminal domain DA442_RS03940 PF04073 Aminoacyl-tRNA editing domain DA442_RS03945 PF00849 RNA pseudouridylate synthase DA442_RS03945 PF01479 S4 domain DA442_RS03950 PF01713 Smr domain DA442_RS03975 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain DA442_RS03975 PF03173 Putative carbohydrate binding domain DA442_RS03975 PF00728 Glycosyl hydrolase family 20, catalytic domain DA442_RS03975 PF02838 Glycosyl hydrolase family 20, domain 2 DA442_RS03990 PF00403 Heavy-metal-associated domain DA442_RS04000 PF13609 Gram-negative porin DA442_RS04005 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DA442_RS04010 PF00749 tRNA synthetases class I (E and Q), catalytic domain DA442_RS04020 PF01389 OmpA-like transmembrane domain DA442_RS04020 PF00691 OmpA family DA442_RS04070 PF01584 CheW-like domain DA442_RS04070 PF00072 Response regulator receiver domain DA442_RS04075 PF03705 CheR methyltransferase, all-alpha domain DA442_RS04075 PF01739 CheR methyltransferase, SAM binding domain DA442_RS04080 PF00460 Flagella basal body rod protein DA442_RS04085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_RS04085 PF00460 Flagella basal body rod protein DA442_RS04090 PF13861 FlgD Tudor-like domain DA442_RS04090 PF03963 Flagellar hook capping protein - N-terminal region DA442_RS04090 PF13860 FlgD Ig-like domain DA442_RS04095 PF00460 Flagella basal body rod protein DA442_RS04095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_RS04095 PF07559 Flagellar basal body protein FlaE DA442_RS04105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_RS04105 PF00460 Flagella basal body rod protein DA442_RS04110 PF00460 Flagella basal body rod protein DA442_RS04110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_RS04115 PF02107 Flagellar L-ring protein DA442_RS04120 PF02119 Flagellar P-ring protein DA442_RS04125 PF10135 Rod binding protein DA442_RS04125 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DA442_RS04130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_RS04130 PF07196 Flagellin hook IN motif DA442_RS04135 PF00669 Bacterial flagellin N-terminal helical region DA442_RS04145 PF00669 Bacterial flagellin N-terminal helical region DA442_RS04145 PF07196 Flagellin hook IN motif DA442_RS04145 PF00700 Bacterial flagellin C-terminal helical region DA442_RS04155 PF07196 Flagellin hook IN motif DA442_RS04155 PF00700 Bacterial flagellin C-terminal helical region DA442_RS04155 PF00669 Bacterial flagellin N-terminal helical region DA442_RS04160 PF00700 Bacterial flagellin C-terminal helical region DA442_RS04160 PF00669 Bacterial flagellin N-terminal helical region DA442_RS04160 PF07196 Flagellin hook IN motif DA442_RS04170 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DA442_RS04180 PF00381 PTS HPr component phosphorylation site DA442_RS04190 PF00291 Pyridoxal-phosphate dependent enzyme DA442_RS04200 PF04354 ZipA, C-terminal FtsZ-binding domain DA442_RS04205 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DA442_RS04205 PF03120 NAD-dependent DNA ligase OB-fold domain DA442_RS04205 PF01653 NAD-dependent DNA ligase adenylation domain DA442_RS04205 PF12826 Helix-hairpin-helix motif DA442_RS04205 PF00533 BRCA1 C Terminus (BRCT) domain DA442_RS04215 PF03573 outer membrane porin, OprD family DA442_RS04230 PF16200 C-terminal region of band_7 DA442_RS04230 PF01145 SPFH domain / Band 7 family DA442_RS04235 PF00085 Thioredoxin DA442_RS04245 PF00106 short chain dehydrogenase DA442_RS04250 PF08338 Domain of unknown function (DUF1731) DA442_RS04250 PF01370 NAD dependent epimerase/dehydratase family DA442_RS04255 PF07556 Protein of unknown function (DUF1538) DA442_RS04260 PF07556 Protein of unknown function (DUF1538) DA442_RS04280 PF12850 Calcineurin-like phosphoesterase superfamily domain DA442_RS04295 PF17323 Trans-membrane regulatory protein ToxS DA442_RS04300 PF00486 Transcriptional regulatory protein, C terminal DA442_RS04305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS04305 PF00183 Hsp90 protein DA442_RS04310 PF05191 Adenylate kinase, active site lid DA442_RS04315 PF00762 Ferrochelatase DA442_RS04320 PF00854 POT family DA442_RS04325 PF02357 Transcription termination factor nusG DA442_RS04330 PF13537 Glutamine amidotransferase domain DA442_RS04330 PF00733 Asparagine synthase DA442_RS04335 PF02254 TrkA-N domain DA442_RS04335 PF00999 Sodium/hydrogen exchanger family DA442_RS04340 PF00480 ROK family DA442_RS04340 PF01047 MarR family DA442_RS04345 PF01979 Amidohydrolase family DA442_RS04355 PF00367 phosphotransferase system, EIIB DA442_RS04355 PF02378 Phosphotransferase system, EIIC DA442_RS04360 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DA442_RS04360 PF00749 tRNA synthetases class I (E and Q), catalytic domain DA442_RS04365 PF01475 Ferric uptake regulator family DA442_RS04375 PF00258 Flavodoxin DA442_RS04385 PF12697 Alpha/beta hydrolase family DA442_RS04395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DA442_RS04395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DA442_RS04395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DA442_RS04395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DA442_RS04405 PF01784 NIF3 (NGG1p interacting factor 3) DA442_RS04410 PF00285 Citrate synthase, C-terminal domain DA442_RS04415 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DA442_RS04420 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DA442_RS04425 PF02910 Fumarate reductase flavoprotein C-term DA442_RS04425 PF00890 FAD binding domain DA442_RS04430 PF13085 2Fe-2S iron-sulfur cluster binding domain DA442_RS04435 PF16078 2-oxoglutarate dehydrogenase N-terminus DA442_RS04435 PF00676 Dehydrogenase E1 component DA442_RS04435 PF02779 Transketolase, pyrimidine binding domain DA442_RS04435 PF16870 2-oxoglutarate dehydrogenase C-terminal DA442_RS04440 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DA442_RS04440 PF00364 Biotin-requiring enzyme DA442_RS04440 PF02817 e3 binding domain DA442_RS04445 PF08442 ATP-grasp domain DA442_RS04445 PF00549 CoA-ligase DA442_RS04450 PF00549 CoA-ligase DA442_RS04450 PF02629 CoA binding domain DA442_RS04455 PF00950 ABC 3 transport family DA442_RS04460 PF00005 ABC transporter DA442_RS04465 PF01297 Zinc-uptake complex component A periplasmic DA442_RS04480 PF04023 FeoA domain DA442_RS04485 PF17910 FeoB cytosolic helical domain DA442_RS04485 PF07664 Ferrous iron transport protein B C terminus DA442_RS04485 PF02421 Ferrous iron transport protein B DA442_RS04485 PF07670 Nucleoside recognition DA442_RS04500 PF03485 Arginyl tRNA synthetase N terminal domain DA442_RS04500 PF00750 tRNA synthetases class I (R) DA442_RS04500 PF05746 DALR anticodon binding domain DA442_RS04510 PF06185 YecM protein DA442_RS04515 PF01842 ACT domain DA442_RS04515 PF00551 Formyl transferase DA442_RS04520 PF04851 Type III restriction enzyme, res subunit DA442_RS04520 PF13307 Helicase C-terminal domain DA442_RS04525 PF00814 Glycoprotease family DA442_RS04540 PF00561 alpha/beta hydrolase fold DA442_RS04545 PF13193 AMP-binding enzyme C-terminal domain DA442_RS04545 PF00501 AMP-binding enzyme DA442_RS04550 PF00570 HRDC domain DA442_RS04550 PF01612 3'-5' exonuclease DA442_RS04555 PF03776 Septum formation topological specificity factor MinE DA442_RS04560 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DA442_RS04565 PF03775 Septum formation inhibitor MinC, C-terminal domain DA442_RS04565 PF05209 Septum formation inhibitor MinC, N-terminal domain DA442_RS04570 PF05166 YcgL domain DA442_RS04575 PF13406 Transglycosylase SLT domain DA442_RS04580 PF03466 LysR substrate binding domain DA442_RS04580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS04585 PF07670 Nucleoside recognition DA442_RS04585 PF07662 Na+ dependent nucleoside transporter C-terminus DA442_RS04585 PF01773 Na+ dependent nucleoside transporter N-terminus DA442_RS04590 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DA442_RS04590 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DA442_RS04605 PF02801 Beta-ketoacyl synthase, C-terminal domain DA442_RS04605 PF00109 Beta-ketoacyl synthase, N-terminal domain DA442_RS04615 PF07977 FabA-like domain DA442_RS04620 PF02801 Beta-ketoacyl synthase, C-terminal domain DA442_RS04620 PF00109 Beta-ketoacyl synthase, N-terminal domain DA442_RS04645 PF00221 Aromatic amino acid lyase DA442_RS04650 PF00535 Glycosyl transferase family 2 DA442_RS04655 PF07977 FabA-like domain DA442_RS04670 PF00550 Phosphopantetheine attachment site DA442_RS04675 PF00550 Phosphopantetheine attachment site DA442_RS04700 PF04820 Tryptophan halogenase DA442_RS04710 PF00571 CBS domain DA442_RS04710 PF01595 Cyclin M transmembrane N-terminal domain DA442_RS04710 PF03471 Transporter associated domain DA442_RS04715 PF00270 DEAD/DEAH box helicase DA442_RS04715 PF00271 Helicase conserved C-terminal domain DA442_RS04720 PF02080 TrkA-C domain DA442_RS04720 PF02254 TrkA-N domain DA442_RS04725 PF02386 Cation transport protein DA442_RS04745 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DA442_RS04750 PF03480 Bacterial extracellular solute-binding protein, family 7 DA442_RS04755 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DA442_RS04760 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DA442_RS04775 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS04775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS04775 PF02743 Cache domain DA442_RS04780 PF05697 Bacterial trigger factor protein (TF) DA442_RS04780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA442_RS04780 PF05698 Bacterial trigger factor protein (TF) C-terminus DA442_RS04785 PF00574 Clp protease DA442_RS04790 PF10431 C-terminal, D2-small domain, of ClpB protein DA442_RS04790 PF06689 ClpX C4-type zinc finger DA442_RS04790 PF07724 AAA domain (Cdc48 subfamily) DA442_RS04795 PF00004 ATPase family associated with various cellular activities (AAA) DA442_RS04795 PF05362 Lon protease (S16) C-terminal proteolytic domain DA442_RS04795 PF02190 ATP-dependent protease La (LON) substrate-binding domain DA442_RS04800 PF00216 Bacterial DNA-binding protein DA442_RS04805 PF13145 PPIC-type PPIASE domain DA442_RS04825 PF13286 Phosphohydrolase-associated domain DA442_RS04825 PF01966 HD domain DA442_RS04835 PF00155 Aminotransferase class I and II DA442_RS04840 PF00425 chorismate binding enzyme DA442_RS04845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA442_RS04845 PF16582 Middle domain of thiamine pyrophosphate DA442_RS04845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA442_RS04850 PF12697 Alpha/beta hydrolase family DA442_RS04855 PF00378 Enoyl-CoA hydratase/isomerase DA442_RS04860 PF13378 Enolase C-terminal domain-like DA442_RS04865 PF13193 AMP-binding enzyme C-terminal domain DA442_RS04865 PF00501 AMP-binding enzyme DA442_RS04875 PF03601 Conserved hypothetical protein 698 DA442_RS04880 PF07690 Major Facilitator Superfamily DA442_RS04925 PF13533 Biotin-lipoyl like DA442_RS04930 PF00873 AcrB/AcrD/AcrF family DA442_RS04955 PF00291 Pyridoxal-phosphate dependent enzyme DA442_RS04960 PF01037 Lrp/AsnC ligand binding domain DA442_RS04960 PF13404 AsnC-type helix-turn-helix domain DA442_RS04975 PF09619 Type III secretion system lipoprotein chaperone (YscW) DA442_RS04980 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DA442_RS04990 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS04990 PF17152 Periplasmic sensor domain DA442_RS05000 PF08032 RNA 2'-O ribose methyltransferase substrate binding DA442_RS05000 PF00588 SpoU rRNA Methylase family DA442_RS05005 PF11953 Domain of unknown function (DUF3470) DA442_RS05005 PF00037 4Fe-4S binding domain DA442_RS05020 PF00478 IMP dehydrogenase / GMP reductase domain DA442_RS05020 PF00571 CBS domain DA442_RS05025 PF00403 Heavy-metal-associated domain DA442_RS05030 PF01048 Phosphorylase superfamily DA442_RS05045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS05045 PF00672 HAMP domain DA442_RS05050 PF01230 HIT domain DA442_RS05065 PF13036 Peptidoglycan-synthase activator LpoB DA442_RS05065 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DA442_RS05075 PF05728 Uncharacterised protein family (UPF0227) DA442_RS05085 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_RS05100 PF00271 Helicase conserved C-terminal domain DA442_RS05100 PF03461 TRCF domain DA442_RS05100 PF17757 UvrB interaction domain DA442_RS05100 PF02559 CarD-like/TRCF domain DA442_RS05100 PF00270 DEAD/DEAH box helicase DA442_RS05110 PF02687 FtsX-like permease family DA442_RS05110 PF12704 MacB-like periplasmic core domain DA442_RS05115 PF00005 ABC transporter DA442_RS05120 PF02687 FtsX-like permease family DA442_RS05120 PF12704 MacB-like periplasmic core domain DA442_RS05130 PF03772 Competence protein DA442_RS05130 PF13567 Domain of unknown function (DUF4131) DA442_RS05130 PF00753 Metallo-beta-lactamase superfamily DA442_RS05135 PF00005 ABC transporter DA442_RS05135 PF00664 ABC transporter transmembrane region DA442_RS05140 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DA442_RS05145 PF03966 Trm112p-like protein DA442_RS05150 PF02348 Cytidylyltransferase DA442_RS05155 PF04293 SpoVR like protein DA442_RS05160 PF04285 Protein of unknown function (DUF444) DA442_RS05165 PF08298 PrkA AAA domain DA442_RS05165 PF06798 PrkA serine protein kinase C-terminal domain DA442_RS05175 PF03887 YfbU domain DA442_RS05185 PF04055 Radical SAM superfamily DA442_RS05195 PF01228 Glycine radical DA442_RS05195 PF02901 Pyruvate formate lyase-like DA442_RS05215 PF00005 ABC transporter DA442_RS05220 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_RS05225 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS05230 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS05240 PF03372 Endonuclease/Exonuclease/phosphatase family DA442_RS05245 PF10689 Protein of unknown function (DUF2496) DA442_RS05250 PF07445 Primosomal replication protein priC DA442_RS05255 PF01925 Sulfite exporter TauE/SafE DA442_RS05260 PF13307 Helicase C-terminal domain DA442_RS05260 PF06733 DEAD_2 DA442_RS05270 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DA442_RS05275 PF00849 RNA pseudouridylate synthase DA442_RS05280 PF03971 Monomeric isocitrate dehydrogenase DA442_RS05285 PF00313 'Cold-shock' DNA-binding domain DA442_RS05290 PF02617 ATP-dependent Clp protease adaptor protein ClpS DA442_RS05305 PF01176 Translation initiation factor 1A / IF-1 DA442_RS05310 PF04377 Arginine-tRNA-protein transferase, C terminus DA442_RS05310 PF04376 Arginine-tRNA-protein transferase, N terminus DA442_RS05315 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DA442_RS05330 PF10692 Protein of unknown function (DUF2498) DA442_RS05335 PF01396 Topoisomerase DNA binding C4 zinc finger DA442_RS05335 PF01751 Toprim domain DA442_RS05335 PF08272 Topoisomerase I zinc-ribbon-like DA442_RS05335 PF01131 DNA topoisomerase DA442_RS05340 PF00483 Nucleotidyl transferase DA442_RS05345 PF08323 Starch synthase catalytic domain DA442_RS05345 PF00534 Glycosyl transferases group 1 DA442_RS05365 PF04993 TfoX N-terminal domain DA442_RS05365 PF04994 TfoX C-terminal domain DA442_RS05370 PF00356 Bacterial regulatory proteins, lacI family DA442_RS05375 PF02613 Nitrate reductase delta subunit DA442_RS05380 PF00486 Transcriptional regulatory protein, C terminal DA442_RS05380 PF00072 Response regulator receiver domain DA442_RS05385 PF02698 DUF218 domain DA442_RS05390 PF13847 Methyltransferase domain DA442_RS05395 PF17192 MukF middle domain DA442_RS05395 PF03882 MukF winged-helix domain DA442_RS05395 PF17193 MukF C-terminal domain DA442_RS05400 PF04288 MukE-like family DA442_RS05405 PF16330 MukB hinge domain DA442_RS05405 PF04310 MukB N-terminal DA442_RS05415 PF18030 RimK PreATP-grasp domain DA442_RS05415 PF08443 RimK-like ATP-grasp domain DA442_RS05425 PF08443 RimK-like ATP-grasp domain DA442_RS05425 PF18030 RimK PreATP-grasp domain DA442_RS05435 PF08003 Protein of unknown function (DUF1698) DA442_RS05440 PF13649 Methyltransferase domain DA442_RS05445 PF01904 Protein of unknown function DUF72 DA442_RS05450 PF00152 tRNA synthetases class II (D, K and N) DA442_RS05450 PF02938 GAD domain DA442_RS05450 PF01336 OB-fold nucleic acid binding domain DA442_RS05455 PF02075 Crossover junction endodeoxyribonuclease RuvC DA442_RS05460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS05460 PF00672 HAMP domain DA442_RS05460 PF02203 Tar ligand binding domain homologue DA442_RS05465 PF07499 RuvA, C-terminal domain DA442_RS05465 PF01330 RuvA N terminal domain DA442_RS05470 PF05496 Holliday junction DNA helicase RuvB P-loop domain DA442_RS05470 PF17864 RuvB AAA lid domain DA442_RS05470 PF05491 RuvB C-terminal winged helix domain DA442_RS05475 PF01654 Cytochrome bd terminal oxidase subunit I DA442_RS05480 PF02322 Cytochrome bd terminal oxidase subunit II DA442_RS05485 PF08173 Membrane bound YbgT-like protein DA442_RS05495 PF03061 Thioesterase superfamily DA442_RS05500 PF01618 MotA/TolQ/ExbB proton channel family DA442_RS05505 PF02472 Biopolymer transport protein ExbD/TolR DA442_RS05520 PF00691 OmpA family DA442_RS05525 PF16331 TolA binding protein trimerisation DA442_RS05525 PF13174 Tetratricopeptide repeat DA442_RS05530 PF02445 Quinolinate synthetase A protein DA442_RS05540 PF03994 Domain of Unknown Function (DUF350) DA442_RS05565 PF06610 L-alanine exporter DA442_RS05585 PF02796 Helix-turn-helix domain of resolvase DA442_RS05585 PF00239 Resolvase, N terminal domain DA442_RS05595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS05595 PF02743 Cache domain DA442_RS05595 PF00672 HAMP domain DA442_RS05610 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA442_RS05610 PF00529 HlyD membrane-fusion protein of T1SS DA442_RS05635 PF00579 tRNA synthetases class I (W and Y) DA442_RS05645 PF03372 Endonuclease/Exonuclease/phosphatase family DA442_RS05650 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) DA442_RS05660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS05660 PF03466 LysR substrate binding domain DA442_RS05675 PF01037 Lrp/AsnC ligand binding domain DA442_RS05685 PF03548 Outer membrane lipoprotein carrier protein LolA DA442_RS05695 PF02403 Seryl-tRNA synthetase N-terminal domain DA442_RS05695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DA442_RS05710 PF01258 Prokaryotic dksA/traR C4-type zinc finger DA442_RS05715 PF00202 Aminotransferase class-III DA442_RS05720 PF04055 Radical SAM superfamily DA442_RS05720 PF06968 Biotin and Thiamin Synthesis associated domain DA442_RS05725 PF00155 Aminotransferase class I and II DA442_RS05730 PF08241 Methyltransferase domain DA442_RS05745 PF01435 Peptidase family M48 DA442_RS05755 PF00106 short chain dehydrogenase DA442_RS05795 PF08328 Adenylosuccinate lyase C-terminal DA442_RS05795 PF00206 Lyase DA442_RS05800 PF04356 Protein of unknown function (DUF489) DA442_RS05815 PF00294 pfkB family carbohydrate kinase DA442_RS05820 PF00816 H-NS histone family DA442_RS05825 PF03553 Na+/H+ antiporter family DA442_RS05835 PF00072 Response regulator receiver domain DA442_RS05835 PF02954 Bacterial regulatory protein, Fis family DA442_RS05835 PF00158 Sigma-54 interaction domain DA442_RS05840 PF01634 ATP phosphoribosyltransferase DA442_RS05840 PF08029 HisG, C-terminal domain DA442_RS05845 PF00815 Histidinol dehydrogenase DA442_RS05850 PF00155 Aminotransferase class I and II DA442_RS05855 PF00475 Imidazoleglycerol-phosphate dehydratase DA442_RS05855 PF08645 Polynucleotide kinase 3 phosphatase DA442_RS05860 PF00117 Glutamine amidotransferase class-I DA442_RS05865 PF00977 Histidine biosynthesis protein DA442_RS05870 PF00977 Histidine biosynthesis protein DA442_RS05875 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DA442_RS05875 PF01502 Phosphoribosyl-AMP cyclohydrolase DA442_RS05880 PF02810 SEC-C motif DA442_RS05890 PF00563 EAL domain DA442_RS05890 PF08668 HDOD domain DA442_RS05895 PF00149 Calcineurin-like phosphoesterase DA442_RS05900 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DA442_RS05905 PF01406 tRNA synthetases class I (C) catalytic domain DA442_RS05905 PF09190 DALR domain DA442_RS05910 PF00265 Thymidine kinase DA442_RS05915 PF02698 DUF218 domain DA442_RS05940 PF01226 Formate/nitrite transporter DA442_RS05950 PF03649 Uncharacterised protein family (UPF0014) DA442_RS05955 PF06796 Periplasmic nitrate reductase protein NapE DA442_RS05960 PF03264 NapC/NirT cytochrome c family, N-terminal region DA442_RS05965 PF01568 Molydopterin dinucleotide binding domain DA442_RS05965 PF18364 Molybdopterin oxidoreductase N-terminal domain DA442_RS05965 PF00384 Molybdopterin oxidoreductase DA442_RS05970 PF16875 Glycosyl hydrolase family 36 N-terminal domain DA442_RS05970 PF16874 Glycosyl hydrolase family 36 C-terminal domain DA442_RS05990 PF00005 ABC transporter DA442_RS05995 PF00005 ABC transporter DA442_RS05995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS06000 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS06000 PF12911 N-terminal TM domain of oligopeptide transport permease C DA442_RS06005 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS06010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_RS06015 PF00158 Sigma-54 interaction domain DA442_RS06015 PF02954 Bacterial regulatory protein, Fis family DA442_RS06020 PF04012 PspA/IM30 family DA442_RS06025 PF06667 Phage shock protein B DA442_RS06030 PF04024 PspC domain DA442_RS06050 PF03352 Methyladenine glycosylase DA442_RS06055 PF03280 Proteobacterial lipase chaperone protein DA442_RS06060 PF00561 alpha/beta hydrolase fold DA442_RS06065 PF01053 Cys/Met metabolism PLP-dependent enzyme DA442_RS06070 PF13396 Phospholipase_D-nuclease N-terminal DA442_RS06070 PF13091 PLD-like domain DA442_RS06075 PF00209 Sodium:neurotransmitter symporter family DA442_RS06080 PF12729 Four helix bundle sensory module for signal transduction DA442_RS06080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS06080 PF00672 HAMP domain DA442_RS06085 PF00849 RNA pseudouridylate synthase DA442_RS06095 PF00111 2Fe-2S iron-sulfur cluster binding domain DA442_RS06095 PF00175 Oxidoreductase NAD-binding domain DA442_RS06095 PF00970 Oxidoreductase FAD-binding domain DA442_RS06100 PF03063 Prismane/CO dehydrogenase family DA442_RS06105 PF01590 GAF domain DA442_RS06105 PF00158 Sigma-54 interaction domain DA442_RS06120 PF01066 CDP-alcohol phosphatidyltransferase DA442_RS06125 PF00005 ABC transporter DA442_RS06130 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS06135 PF13416 Bacterial extracellular solute-binding protein DA442_RS06140 PF09335 SNARE associated Golgi protein DA442_RS06150 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_RS06150 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DA442_RS06160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS06160 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS06165 PF00072 Response regulator receiver domain DA442_RS06165 PF00196 Bacterial regulatory proteins, luxR family DA442_RS06175 PF06945 Protein of unknown function (DUF1289) DA442_RS06190 PF00149 Calcineurin-like phosphoesterase DA442_RS06190 PF02872 5'-nucleotidase, C-terminal domain DA442_RS06205 PF01386 Ribosomal L25p family DA442_RS06210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS06215 PF00072 Response regulator receiver domain DA442_RS06215 PF00486 Transcriptional regulatory protein, C terminal DA442_RS06225 PF00271 Helicase conserved C-terminal domain DA442_RS06225 PF04851 Type III restriction enzyme, res subunit DA442_RS06230 PF01479 S4 domain DA442_RS06230 PF00849 RNA pseudouridylate synthase DA442_RS06235 PF07690 Major Facilitator Superfamily DA442_RS06250 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) DA442_RS06265 PF03264 NapC/NirT cytochrome c family, N-terminal region DA442_RS06270 PF13460 NAD(P)H-binding DA442_RS06270 PF11066 Protein of unknown function (DUF2867) DA442_RS06275 PF01554 MatE DA442_RS06280 PF00005 ABC transporter DA442_RS06295 PF06965 Na+/H+ antiporter 1 DA442_RS06300 PF16295 Tetracyclin repressor-like, C-terminal domain DA442_RS06300 PF00440 Bacterial regulatory proteins, tetR family DA442_RS06310 PF12241 Trans-2-enoyl-CoA reductase catalytic region DA442_RS06310 PF07055 Enoyl reductase FAD binding domain DA442_RS06310 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DA442_RS06315 PF02080 TrkA-C domain DA442_RS06315 PF06826 Predicted Permease Membrane Region DA442_RS06320 PF00462 Glutaredoxin DA442_RS06330 PF00465 Iron-containing alcohol dehydrogenase DA442_RS06340 PF00282 Pyridoxal-dependent decarboxylase conserved domain DA442_RS06350 PF03956 Lysine exporter LysO DA442_RS06370 PF04993 TfoX N-terminal domain DA442_RS06370 PF04994 TfoX C-terminal domain DA442_RS06385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS06385 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_RS06385 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS06395 PF00266 Aminotransferase class-V DA442_RS06400 PF00291 Pyridoxal-phosphate dependent enzyme DA442_RS06415 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_RS06425 PF00266 Aminotransferase class-V DA442_RS06435 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS06435 PF00072 Response regulator receiver domain DA442_RS06440 PF00939 Sodium:sulfate symporter transmembrane region DA442_RS06445 PF02698 DUF218 domain DA442_RS06450 PF03949 Malic enzyme, NAD binding domain DA442_RS06450 PF00390 Malic enzyme, N-terminal domain DA442_RS06455 PF00270 DEAD/DEAH box helicase DA442_RS06455 PF04408 Helicase associated domain (HA2) DA442_RS06455 PF00271 Helicase conserved C-terminal domain DA442_RS06455 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DA442_RS06460 PF02253 Phospholipase A1 DA442_RS06470 PF16655 PhoD-like phosphatase, N-terminal domain DA442_RS06470 PF09423 PhoD-like phosphatase DA442_RS06475 PF01259 SAICAR synthetase DA442_RS06495 PF00691 OmpA family DA442_RS06495 PF05736 OprF membrane domain DA442_RS06510 PF01565 FAD binding domain DA442_RS06510 PF13183 4Fe-4S dicluster domain DA442_RS06510 PF02913 FAD linked oxidases, C-terminal domain DA442_RS06515 PF04191 Phospholipid methyltransferase DA442_RS06525 PF00221 Aromatic amino acid lyase DA442_RS06530 PF01175 Urocanase Rossmann-like domain DA442_RS06530 PF17392 Urocanase C-terminal domain DA442_RS06530 PF17391 Urocanase N-terminal domain DA442_RS06540 PF01979 Amidohydrolase family DA442_RS06545 PF00392 Bacterial regulatory proteins, gntR family DA442_RS06545 PF07702 UTRA domain DA442_RS06560 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DA442_RS06560 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DA442_RS06560 PF02824 TGS domain DA442_RS06560 PF03129 Anticodon binding domain DA442_RS06565 PF00707 Translation initiation factor IF-3, C-terminal domain DA442_RS06565 PF05198 Translation initiation factor IF-3, N-terminal domain DA442_RS06570 PF01632 Ribosomal protein L35 DA442_RS06575 PF00453 Ribosomal protein L20 DA442_RS06580 PF01906 Putative heavy-metal-binding DA442_RS06610 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS06610 PF17158 Membrane-associated sensor, integral membrane domain DA442_RS06620 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DA442_RS06620 PF01588 Putative tRNA binding domain DA442_RS06620 PF03147 Ferredoxin-fold anticodon binding domain DA442_RS06620 PF03484 tRNA synthetase B5 domain DA442_RS06620 PF03483 B3/4 domain DA442_RS06635 PF00216 Bacterial DNA-binding protein DA442_RS06645 PF05724 Thiopurine S-methyltransferase (TPMT) DA442_RS06650 PF02222 ATP-grasp domain DA442_RS06655 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DA442_RS06655 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region DA442_RS06660 PF04172 LrgB-like family DA442_RS06665 PF03788 LrgA family DA442_RS06670 PF08411 Exonuclease C-terminal DA442_RS06670 PF00929 Exonuclease DA442_RS06675 PF00375 Sodium:dicarboxylate symporter family DA442_RS06680 PF13460 NAD(P)H-binding DA442_RS06685 PF02277 Phosphoribosyltransferase DA442_RS06690 PF02654 Cobalamin-5-phosphate synthase DA442_RS06695 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DA442_RS06715 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family DA442_RS06720 PF01032 FecCD transport family DA442_RS06725 PF00005 ABC transporter DA442_RS06745 PF03466 LysR substrate binding domain DA442_RS06745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS06765 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DA442_RS06770 PF16363 GDP-mannose 4,6 dehydratase DA442_RS06775 PF04991 LicD family DA442_RS06780 PF01863 Protein of unknown function DUF45 DA442_RS06785 PF05971 RNA methyltransferase DA442_RS06805 PF00392 Bacterial regulatory proteins, gntR family DA442_RS06810 PF00171 Aldehyde dehydrogenase family DA442_RS06815 PF05544 Proline racemase DA442_RS06835 PF02423 Ornithine cyclodeaminase/mu-crystallin family DA442_RS06840 PF00701 Dihydrodipicolinate synthetase family DA442_RS06845 PF08402 TOBE domain DA442_RS06845 PF00005 ABC transporter DA442_RS06850 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS06855 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS06870 PF01752 Collagenase DA442_RS06870 PF08453 Peptidase family M9 N-terminal DA442_RS06885 PF00005 ABC transporter DA442_RS06885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS06890 PF00005 ABC transporter DA442_RS06890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS06895 PF12911 N-terminal TM domain of oligopeptide transport permease C DA442_RS06895 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS06900 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS06905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_RS06910 PF01546 Peptidase family M20/M25/M40 DA442_RS06910 PF07687 Peptidase dimerisation domain DA442_RS06925 PF04209 homogentisate 1,2-dioxygenase DA442_RS06935 PF02798 Glutathione S-transferase, N-terminal domain DA442_RS06935 PF14497 Glutathione S-transferase, C-terminal domain DA442_RS07045 PF00313 'Cold-shock' DNA-binding domain DA442_RS07075 PF07411 Domain of unknown function (DUF1508) DA442_RS07090 PF04466 Phage terminase large subunit DA442_RS07090 PF17288 Terminase RNAseH like domain DA442_RS07300 PF02405 Permease MlaE DA442_RS07305 PF00005 ABC transporter DA442_RS07350 PF13520 Amino acid permease DA442_RS07360 PF13520 Amino acid permease DA442_RS07370 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DA442_RS07370 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DA442_RS07370 PF01276 Orn/Lys/Arg decarboxylase, major domain DA442_RS07375 PF08543 Phosphomethylpyrimidine kinase DA442_RS07390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS07390 PF03466 LysR substrate binding domain DA442_RS07395 PF07687 Peptidase dimerisation domain DA442_RS07395 PF01546 Peptidase family M20/M25/M40 DA442_RS07410 PF00300 Histidine phosphatase superfamily (branch 1) DA442_RS07435 PF00072 Response regulator receiver domain DA442_RS07435 PF00158 Sigma-54 interaction domain DA442_RS07435 PF02954 Bacterial regulatory protein, Fis family DA442_RS07445 PF01966 HD domain DA442_RS07445 PF11871 Domain of unknown function (DUF3391) DA442_RS07450 PF01810 LysE type translocator DA442_RS07455 PF11230 Protein of unknown function (DUF3029) DA442_RS07460 PF04055 Radical SAM superfamily DA442_RS07470 PF03741 Integral membrane protein TerC family DA442_RS07480 PF01476 LysM domain DA442_RS07480 PF08525 Opacity-associated protein A N-terminal motif DA442_RS07480 PF01551 Peptidase family M23 DA442_RS07505 PF00158 Sigma-54 interaction domain DA442_RS07505 PF02954 Bacterial regulatory protein, Fis family DA442_RS07510 PF00004 ATPase family associated with various cellular activities (AAA) DA442_RS07510 PF17871 AAA lid domain DA442_RS07510 PF07724 AAA domain (Cdc48 subfamily) DA442_RS07510 PF10431 C-terminal, D2-small domain, of ClpB protein DA442_RS07515 PF05638 Type VI secretion system effector, Hcp DA442_RS07545 PF00069 Protein kinase domain DA442_RS07560 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath DA442_RS07570 PF05947 Type VI secretion system, TssF DA442_RS07580 PF01037 Lrp/AsnC ligand binding domain DA442_RS07610 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DA442_RS07665 PF01966 HD domain DA442_RS07675 PF00465 Iron-containing alcohol dehydrogenase DA442_RS07680 PF03222 Tryptophan/tyrosine permease family DA442_RS07710 PF00664 ABC transporter transmembrane region DA442_RS07710 PF00005 ABC transporter DA442_RS07740 PF00012 Hsp70 protein DA442_RS07745 PF00012 Hsp70 protein DA442_RS07755 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS07755 PF17158 Membrane-associated sensor, integral membrane domain DA442_RS07785 PF01568 Molydopterin dinucleotide binding domain DA442_RS07785 PF00384 Molybdopterin oxidoreductase DA442_RS07785 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA442_RS07790 PF13247 4Fe-4S dicluster domain DA442_RS07790 PF12800 4Fe-4S binding domain DA442_RS07795 PF04976 DMSO reductase anchor subunit (DmsC) DA442_RS07800 PF02613 Nitrate reductase delta subunit DA442_RS07810 PF02525 Flavodoxin-like fold DA442_RS07815 PF00270 DEAD/DEAH box helicase DA442_RS07815 PF11898 Domain of unknown function (DUF3418) DA442_RS07815 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DA442_RS07815 PF00271 Helicase conserved C-terminal domain DA442_RS07815 PF04408 Helicase associated domain (HA2) DA442_RS07830 PF02028 BCCT, betaine/carnitine/choline family transporter DA442_RS07840 PF02397 Bacterial sugar transferase DA442_RS07845 PF00535 Glycosyl transferase family 2 DA442_RS07850 PF00534 Glycosyl transferases group 1 DA442_RS07850 PF13439 Glycosyltransferase Family 4 DA442_RS07885 PF13439 Glycosyltransferase Family 4 DA442_RS07885 PF00534 Glycosyl transferases group 1 DA442_RS07890 PF13439 Glycosyltransferase Family 4 DA442_RS07890 PF00534 Glycosyl transferases group 1 DA442_RS07895 PF02954 Bacterial regulatory protein, Fis family DA442_RS07895 PF00158 Sigma-54 interaction domain DA442_RS07895 PF00072 Response regulator receiver domain DA442_RS07915 PF10531 SLBB domain DA442_RS07915 PF02563 Polysaccharide biosynthesis/export protein DA442_RS07925 PF01740 STAS domain DA442_RS07930 PF01068 ATP dependent DNA ligase domain DA442_RS07930 PF14743 DNA ligase OB-like domain DA442_RS07940 PF01554 MatE DA442_RS07945 PF00677 Lumazine binding domain DA442_RS07955 PF03881 Fructosamine kinase DA442_RS07965 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS07965 PF05230 MASE2 domain DA442_RS07975 PF00877 NlpC/P60 family DA442_RS07980 PF00672 HAMP domain DA442_RS07980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS07980 PF17202 Single cache domain 3 DA442_RS08020 PF00480 ROK family DA442_RS08030 PF03453 MoeA N-terminal region (domain I and II) DA442_RS08030 PF03454 MoeA C-terminal region (domain IV) DA442_RS08030 PF00994 Probable molybdopterin binding domain DA442_RS08035 PF12804 MobA-like NTP transferase domain DA442_RS08040 PF08402 TOBE domain DA442_RS08040 PF00005 ABC transporter DA442_RS08060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS08060 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS08070 PF12848 ABC transporter DA442_RS08070 PF00005 ABC transporter DA442_RS08075 PF02634 FdhD/NarQ family DA442_RS08100 PF02613 Nitrate reductase delta subunit DA442_RS08115 PF13247 4Fe-4S dicluster domain DA442_RS08130 PF03527 RHS protein DA442_RS08130 PF05593 RHS Repeat DA442_RS08155 PF00909 Ammonium Transporter Family DA442_RS08165 PF02146 Sir2 family DA442_RS08170 PF13416 Bacterial extracellular solute-binding protein DA442_RS08175 PF13416 Bacterial extracellular solute-binding protein DA442_RS08180 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS08185 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS08190 PF00005 ABC transporter DA442_RS08190 PF08402 TOBE domain DA442_RS08210 PF01171 PP-loop family DA442_RS08220 PF00582 Universal stress protein family DA442_RS08225 PF13545 Crp-like helix-turn-helix domain DA442_RS08225 PF00027 Cyclic nucleotide-binding domain DA442_RS08250 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP DA442_RS08250 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DA442_RS08280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS08280 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS08280 PF09308 LuxQ, periplasmic DA442_RS08280 PF00072 Response regulator receiver domain DA442_RS08300 PF17414 MatP C-terminal ribbon-helix-helix domain DA442_RS08300 PF06303 MatP N-terminal domain DA442_RS08310 PF07977 FabA-like domain DA442_RS08315 PF04957 Ribosome modulation factor DA442_RS08325 PF00005 ABC transporter DA442_RS08325 PF12848 ABC transporter DA442_RS08325 PF16326 ABC transporter C-terminal domain DA442_RS08335 PF01170 Putative RNA methylase family UPF0020 DA442_RS08335 PF02926 THUMP domain DA442_RS08335 PF10672 S-adenosylmethionine-dependent methyltransferase DA442_RS08345 PF07126 Cell-division protein ZapC DA442_RS08350 PF01180 Dihydroorotate dehydrogenase DA442_RS08355 PF05088 Bacterial NAD-glutamate dehydrogenase DA442_RS08365 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DA442_RS08365 PF01433 Peptidase family M1 domain DA442_RS08365 PF11940 Domain of unknown function (DUF3458) Ig-like fold DA442_RS08375 PF17804 Tail specific protease N-terminal domain DA442_RS08375 PF11818 C-terminal domain of tail specific protease (DUF3340) DA442_RS08375 PF03572 Peptidase family S41 DA442_RS08375 PF00595 PDZ domain DA442_RS08380 PF17516 ProQ C-terminal domain DA442_RS08380 PF04352 ProQ/FINO family DA442_RS08385 PF13185 GAF domain DA442_RS08390 PF00664 ABC transporter transmembrane region DA442_RS08390 PF00005 ABC transporter DA442_RS08395 PF04403 Paraquat-inducible protein A DA442_RS08400 PF02470 MlaD protein DA442_RS08410 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF DA442_RS08410 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DA442_RS08410 PF01189 16S rRNA methyltransferase RsmB/F DA442_RS08430 PF00793 DAHP synthetase I family DA442_RS08435 PF04461 Protein of unknown function (DUF520) DA442_RS08445 PF10414 Sirohaem synthase dimerisation region DA442_RS08445 PF14824 Sirohaem biosynthesis protein central DA442_RS08445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA442_RS08455 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_RS08460 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS08465 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS08470 PF00005 ABC transporter DA442_RS08475 PF01027 Inhibitor of apoptosis-promoting Bax1 DA442_RS08485 PF04358 DsrC like protein DA442_RS08490 PF00708 Acylphosphatase DA442_RS08495 PF02743 Cache domain DA442_RS08495 PF00672 HAMP domain DA442_RS08495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS08500 PF17785 PUA-like domain DA442_RS08500 PF10672 S-adenosylmethionine-dependent methyltransferase DA442_RS08515 PF05736 OprF membrane domain DA442_RS08515 PF00691 OmpA family DA442_RS08545 PF05736 OprF membrane domain DA442_RS08545 PF00691 OmpA family DA442_RS08555 PF17158 Membrane-associated sensor, integral membrane domain DA442_RS08555 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS08560 PF06508 Queuosine biosynthesis protein QueC DA442_RS08565 PF04055 Radical SAM superfamily DA442_RS08580 PF00089 Trypsin DA442_RS08590 PF13193 AMP-binding enzyme C-terminal domain DA442_RS08590 PF00501 AMP-binding enzyme DA442_RS08590 PF16177 Acetyl-coenzyme A synthetase N-terminus DA442_RS08595 PF04303 PrpF protein DA442_RS08600 PF00694 Aconitase C-terminal domain DA442_RS08600 PF00330 Aconitase family (aconitate hydratase) DA442_RS08605 PF00285 Citrate synthase, C-terminal domain DA442_RS08635 PF01970 Tripartite tricarboxylate transporter TctA family DA442_RS08660 PF07720 Tetratricopeptide repeat DA442_RS08665 PF04792 V antigen (LcrV) protein DA442_RS08670 PF07216 LcrG protein DA442_RS08675 PF09621 Type III secretion system regulator (LcrR) DA442_RS08680 PF00771 FHIPEP family DA442_RS08700 PF09059 TyeA DA442_RS08705 PF07201 HrpJ-like domain DA442_RS08710 PF18269 T3SS EscN ATPase C-terminal domain DA442_RS08710 PF02874 ATP synthase alpha/beta family, beta-barrel domain DA442_RS08710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA442_RS08725 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DA442_RS08730 PF00813 FliP family DA442_RS08735 PF01313 Bacterial export proteins, family 3 DA442_RS08740 PF01311 Bacterial export proteins, family 1 DA442_RS08745 PF01312 FlhB HrpN YscU SpaS Family DA442_RS08750 PF08360 QacR-like protein, C-terminal region DA442_RS08750 PF00440 Bacterial regulatory proteins, tetR family DA442_RS08760 PF13533 Biotin-lipoyl like DA442_RS08795 PF02661 Fic/DOC family DA442_RS08805 PF02108 Flagellar assembly protein FliH DA442_RS08815 PF01514 Secretory protein of YscJ/FliF family DA442_RS08820 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI DA442_RS08830 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) DA442_RS08835 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF DA442_RS08845 PF16697 Inner membrane component of T3SS, cytoplasmic domain DA442_RS08845 PF16693 Inner membrane component of T3SS, periplasmic domain DA442_RS08850 PF03958 Bacterial type II/III secretion system short domain DA442_RS08850 PF00263 Bacterial type II and III secretion system protein DA442_RS08865 PF12833 Helix-turn-helix domain DA442_RS08885 PF00171 Aldehyde dehydrogenase family DA442_RS08890 PF01590 GAF domain DA442_RS08890 PF02954 Bacterial regulatory protein, Fis family DA442_RS08890 PF00158 Sigma-54 interaction domain DA442_RS08910 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DA442_RS08915 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DA442_RS08915 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DA442_RS08920 PF12431 Transcriptional regulator DA442_RS08920 PF00072 Response regulator receiver domain DA442_RS08925 PF00989 PAS fold DA442_RS08925 PF17203 Single cache domain 3 DA442_RS08925 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DA442_RS08925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS08940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA442_RS08955 PF03150 Di-haem cytochrome c peroxidase DA442_RS08955 PF00034 Cytochrome c DA442_RS08960 PF00696 Amino acid kinase family DA442_RS08960 PF13840 ACT domain DA442_RS08965 PF06339 Ectoine synthase DA442_RS08970 PF00202 Aminotransferase class-III DA442_RS08975 PF00583 Acetyltransferase (GNAT) family DA442_RS08980 PF02028 BCCT, betaine/carnitine/choline family transporter DA442_RS08995 PF00005 ABC transporter DA442_RS08995 PF00571 CBS domain DA442_RS09000 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS09005 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DA442_RS09015 PF00501 AMP-binding enzyme DA442_RS09035 PF00072 Response regulator receiver domain DA442_RS09035 PF00486 Transcriptional regulatory protein, C terminal DA442_RS09040 PF08521 Two-component sensor kinase N-terminal DA442_RS09040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS09040 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS09045 PF00884 Sulfatase DA442_RS09070 PF01235 Sodium:alanine symporter family DA442_RS09080 PF01810 LysE type translocator DA442_RS09085 PF02074 Carboxypeptidase Taq (M32) metallopeptidase DA442_RS09090 PF03279 Bacterial lipid A biosynthesis acyltransferase DA442_RS09100 PF13520 Amino acid permease DA442_RS09115 PF04204 Homoserine O-succinyltransferase DA442_RS09150 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_RS09150 PF12464 Maltose acetyltransferase DA442_RS09160 PF01928 CYTH domain DA442_RS09170 PF04237 YjbR DA442_RS09175 PF01047 MarR family DA442_RS09200 PF00196 Bacterial regulatory proteins, luxR family DA442_RS09200 PF00563 EAL domain DA442_RS09210 PF02833 DHHA2 domain DA442_RS09210 PF01368 DHH family DA442_RS09215 PF00202 Aminotransferase class-III DA442_RS09225 PF04371 Porphyromonas-type peptidyl-arginine deiminase DA442_RS09230 PF00795 Carbon-nitrogen hydrolase DA442_RS09235 PF01266 FAD dependent oxidoreductase DA442_RS09240 PF00171 Aldehyde dehydrogenase family DA442_RS09245 PF07883 Cupin domain DA442_RS09245 PF01381 Helix-turn-helix DA442_RS09250 PF07722 Peptidase C26 DA442_RS09260 PF00120 Glutamine synthetase, catalytic domain DA442_RS09265 PF03553 Na+/H+ antiporter family DA442_RS09320 PF13333 Integrase core domain DA442_RS09320 PF13276 HTH-like domain DA442_RS09320 PF00665 Integrase core domain DA442_RS09325 PF13276 HTH-like domain DA442_RS09325 PF00665 Integrase core domain DA442_RS09325 PF13333 Integrase core domain DA442_RS09460 PF03981 Ubiquinol-cytochrome C chaperone DA442_RS09460 PF13099 Domain of unknown function (DUF3944) DA442_RS09470 PF01337 Barstar (barnase inhibitor) DA442_RS09815 PF01844 HNH endonuclease DA442_RS09840 PF00857 Isochorismatase family DA442_RS10045 PF07517 SecA DEAD-like domain DA442_RS10045 PF01043 SecA preprotein cross-linking domain DA442_RS10045 PF02810 SEC-C motif DA442_RS10045 PF07516 SecA Wing and Scaffold domain DA442_RS10150 PF00583 Acetyltransferase (GNAT) family DA442_RS10185 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_RS10260 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system DA442_RS10265 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DA442_RS10330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_RS10480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_RS10495 PF00583 Acetyltransferase (GNAT) family DA442_RS10550 PF00589 Phage integrase family DA442_RS10550 PF13495 Phage integrase, N-terminal SAM-like domain DA442_RS10565 PF13302 Acetyltransferase (GNAT) domain DA442_RS10570 PF18024 Helix-turn-helix domain DA442_RS10570 PF00158 Sigma-54 interaction domain DA442_RS10575 PF05128 Domain of unknown function (DUF697) DA442_RS10580 PF04317 YcjX-like family, DUF463 DA442_RS10600 PF04715 Anthranilate synthase component I, N terminal region DA442_RS10600 PF00425 chorismate binding enzyme DA442_RS10605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS10605 PF09308 LuxQ, periplasmic DA442_RS10605 PF00072 Response regulator receiver domain DA442_RS10605 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS10615 PF00293 NUDIX domain DA442_RS10620 PF03222 Tryptophan/tyrosine permease family DA442_RS10625 PF03315 Serine dehydratase beta chain DA442_RS10625 PF03313 Serine dehydratase alpha chain DA442_RS10630 PF04940 Sensors of blue-light using FAD DA442_RS10630 PF00563 EAL domain DA442_RS10640 PF01242 6-pyruvoyl tetrahydropterin synthase DA442_RS10645 PF00672 HAMP domain DA442_RS10645 PF12729 Four helix bundle sensory module for signal transduction DA442_RS10645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS10650 PF00152 tRNA synthetases class II (D, K and N) DA442_RS10650 PF01336 OB-fold nucleic acid binding domain DA442_RS10660 PF00392 Bacterial regulatory proteins, gntR family DA442_RS10660 PF00155 Aminotransferase class I and II DA442_RS10685 PF00155 Aminotransferase class I and II DA442_RS10705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS10705 PF00672 HAMP domain DA442_RS10710 PF02028 BCCT, betaine/carnitine/choline family transporter DA442_RS10715 PF01047 MarR family DA442_RS10720 PF00196 Bacterial regulatory proteins, luxR family DA442_RS10720 PF00072 Response regulator receiver domain DA442_RS10725 PF17200 Single Cache domain 2 DA442_RS10725 PF07730 Histidine kinase DA442_RS10730 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DA442_RS10740 PF03480 Bacterial extracellular solute-binding protein, family 7 DA442_RS10755 PF00753 Metallo-beta-lactamase superfamily DA442_RS10760 PF05951 Bacterial protein of unknown function (DUF882) DA442_RS10765 PF03734 L,D-transpeptidase catalytic domain DA442_RS10765 PF01471 Putative peptidoglycan binding domain DA442_RS10790 PF00925 GTP cyclohydrolase II DA442_RS10800 PF03918 Cytochrome C biogenesis protein DA442_RS10805 PF08534 Redoxin DA442_RS10810 PF01578 Cytochrome C assembly protein DA442_RS10810 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DA442_RS10815 PF03916 Polysulphide reductase, NrfD DA442_RS10820 PF13247 4Fe-4S dicluster domain DA442_RS10830 PF02335 Cytochrome c552 DA442_RS10845 PF03989 DNA gyrase C-terminal domain, beta-propeller DA442_RS10845 PF00521 DNA gyrase/topoisomerase IV, subunit A DA442_RS10855 PF02867 Ribonucleotide reductase, barrel domain DA442_RS10855 PF00317 Ribonucleotide reductase, all-alpha domain DA442_RS10855 PF03477 ATP cone domain DA442_RS10860 PF00268 Ribonucleotide reductase, small chain DA442_RS10870 PF00994 Probable molybdopterin binding domain DA442_RS10885 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DA442_RS10890 PF16653 Saccharopine dehydrogenase C-terminal domain DA442_RS10890 PF03435 Saccharopine dehydrogenase NADP binding domain DA442_RS10895 PF00202 Aminotransferase class-III DA442_RS10920 PF01066 CDP-alcohol phosphatidyltransferase DA442_RS10925 PF01541 GIY-YIG catalytic domain DA442_RS10925 PF02151 UvrB/uvrC motif DA442_RS10925 PF08459 UvrC Helix-hairpin-helix N-terminal DA442_RS10930 PF00196 Bacterial regulatory proteins, luxR family DA442_RS10930 PF00072 Response regulator receiver domain DA442_RS10935 PF03104 DNA polymerase family B, exonuclease domain DA442_RS10935 PF00136 DNA polymerase family B DA442_RS10945 PF08207 Elongation factor P (EF-P) KOW-like domain DA442_RS10945 PF01132 Elongation factor P (EF-P) OB domain DA442_RS10945 PF09285 Elongation factor P, C-terminal DA442_RS10950 PF04269 Protein of unknown function, DUF440 DA442_RS10960 PF01479 S4 domain DA442_RS10960 PF00849 RNA pseudouridylate synthase DA442_RS10970 PF01300 Telomere recombination DA442_RS10975 PF02811 PHP domain DA442_RS10980 PF08056 Tryptophan operon leader peptide DA442_RS10985 PF04715 Anthranilate synthase component I, N terminal region DA442_RS10985 PF00425 chorismate binding enzyme DA442_RS10990 PF00117 Glutamine amidotransferase class-I DA442_RS10995 PF00591 Glycosyl transferase family, a/b domain DA442_RS10995 PF02885 Glycosyl transferase family, helical bundle domain DA442_RS11000 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DA442_RS11000 PF00218 Indole-3-glycerol phosphate synthase DA442_RS11005 PF00291 Pyridoxal-phosphate dependent enzyme DA442_RS11010 PF00290 Tryptophan synthase alpha chain DA442_RS11020 PF13545 Crp-like helix-turn-helix domain DA442_RS11020 PF00027 Cyclic nucleotide-binding domain DA442_RS11025 PF00501 AMP-binding enzyme DA442_RS11025 PF13193 AMP-binding enzyme C-terminal domain DA442_RS11035 PF00375 Sodium:dicarboxylate symporter family DA442_RS11055 PF04279 Intracellular septation protein A DA442_RS11060 PF03061 Thioesterase superfamily DA442_RS11065 PF03795 YCII-related domain DA442_RS11075 PF08267 Cobalamin-independent synthase, N-terminal domain DA442_RS11075 PF01717 Cobalamin-independent synthase, Catalytic domain DA442_RS11085 PF03466 LysR substrate binding domain DA442_RS11085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS11105 PF08497 Radical SAM N-terminal DA442_RS11105 PF04055 Radical SAM superfamily DA442_RS11105 PF11842 Domain of unknown function (DUF3362) DA442_RS11110 PF00672 HAMP domain DA442_RS11110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS11120 PF00486 Transcriptional regulatory protein, C terminal DA442_RS11120 PF00072 Response regulator receiver domain DA442_RS11125 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS11125 PF00672 HAMP domain DA442_RS11125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS11145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS11145 PF03466 LysR substrate binding domain DA442_RS11150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA442_RS11150 PF00529 HlyD membrane-fusion protein of T1SS DA442_RS11160 PF08267 Cobalamin-independent synthase, N-terminal domain DA442_RS11160 PF01717 Cobalamin-independent synthase, Catalytic domain DA442_RS11170 PF02311 AraC-like ligand binding domain DA442_RS11170 PF12833 Helix-turn-helix domain DA442_RS11175 PF00857 Isochorismatase family DA442_RS11180 PF00005 ABC transporter DA442_RS11180 PF02687 FtsX-like permease family DA442_RS11180 PF12704 MacB-like periplasmic core domain DA442_RS11185 PF12704 MacB-like periplasmic core domain DA442_RS11185 PF00005 ABC transporter DA442_RS11185 PF02687 FtsX-like permease family DA442_RS11190 PF00005 ABC transporter DA442_RS11190 PF02687 FtsX-like permease family DA442_RS11190 PF12704 MacB-like periplasmic core domain DA442_RS11200 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA442_RS11215 PF05958 tRNA (Uracil-5-)-methyltransferase DA442_RS11215 PF01938 TRAM domain DA442_RS11230 PF00085 Thioredoxin DA442_RS11235 PF11412 Disulphide bond corrector protein DsbC DA442_RS11235 PF02683 Cytochrome C biogenesis protein transmembrane region DA442_RS11245 PF03466 LysR substrate binding domain DA442_RS11245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS11250 PF00196 Bacterial regulatory proteins, luxR family DA442_RS11250 PF00072 Response regulator receiver domain DA442_RS11255 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS11255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS11260 PF13247 4Fe-4S dicluster domain DA442_RS11265 PF03916 Polysulphide reductase, NrfD DA442_RS11270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA442_RS11270 PF00384 Molybdopterin oxidoreductase DA442_RS11270 PF01568 Molydopterin dinucleotide binding domain DA442_RS11275 PF00034 Cytochrome c DA442_RS11280 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DA442_RS11290 PF02470 MlaD protein DA442_RS11300 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase DA442_RS11310 PF00535 Glycosyl transferase family 2 DA442_RS11315 PF01370 NAD dependent epimerase/dehydratase family DA442_RS11325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_RS11330 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DA442_RS11340 PF06305 Lipopolysaccharide assembly protein A domain DA442_RS11345 PF00216 Bacterial DNA-binding protein DA442_RS11350 PF00575 S1 RNA binding domain DA442_RS11355 PF02224 Cytidylate kinase DA442_RS11360 PF08496 Peptidase family S49 N-terminal DA442_RS11360 PF01343 Peptidase family S49 DA442_RS11365 PF00106 short chain dehydrogenase DA442_RS11380 PF01336 OB-fold nucleic acid binding domain DA442_RS11380 PF02811 PHP domain DA442_RS11380 PF07733 Bacterial DNA polymerase III alpha NTPase domain DA442_RS11380 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DA442_RS11380 PF14579 Helix-hairpin-helix motif DA442_RS11385 PF01584 CheW-like domain DA442_RS11385 PF00072 Response regulator receiver domain DA442_RS11390 PF00480 ROK family DA442_RS11395 PF00224 Pyruvate kinase, barrel domain DA442_RS11395 PF02887 Pyruvate kinase, alpha/beta domain DA442_RS11400 PF01734 Patatin-like phospholipase DA442_RS11415 PF00209 Sodium:neurotransmitter symporter family DA442_RS11435 PF02378 Phosphotransferase system, EIIC DA442_RS11435 PF00367 phosphotransferase system, EIIB DA442_RS11440 PF01026 TatD related DNase DA442_RS11445 PF09115 DNA polymerase III, delta subunit, C terminal DA442_RS11450 PF02223 Thymidylate kinase DA442_RS11455 PF02618 YceG-like family DA442_RS11460 PF01063 Amino-transferase class IV DA442_RS11465 PF00109 Beta-ketoacyl synthase, N-terminal domain DA442_RS11465 PF02801 Beta-ketoacyl synthase, C-terminal domain DA442_RS11470 PF00550 Phosphopantetheine attachment site DA442_RS11480 PF00698 Acyl transferase domain DA442_RS11485 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DA442_RS11485 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DA442_RS11490 PF02504 Fatty acid synthesis protein DA442_RS11495 PF01783 Ribosomal L32p protein family DA442_RS11500 PF02620 Large ribosomal RNA subunit accumulation protein YceD DA442_RS11505 PF02545 Maf-like protein DA442_RS11510 PF01479 S4 domain DA442_RS11510 PF00849 RNA pseudouridylate synthase DA442_RS11525 PF12111 Polyribonucleotide phosphorylase C terminal DA442_RS11525 PF10150 Ribonuclease E/G family DA442_RS11525 PF00575 S1 RNA binding domain DA442_RS11535 PF01740 STAS domain DA442_RS11535 PF00916 Sulfate permease family DA442_RS11540 PF01451 Low molecular weight phosphotyrosine protein phosphatase DA442_RS11545 PF12557 Cob(I)alamin adenosyltransferase N terminal DA442_RS11545 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DA442_RS11555 PF00485 Phosphoribulokinase / Uridine kinase family DA442_RS11565 PF01588 Putative tRNA binding domain DA442_RS11565 PF09334 tRNA synthetases class I (M) DA442_RS11575 PF07840 FadR C-terminal domain DA442_RS11575 PF00392 Bacterial regulatory proteins, gntR family DA442_RS11580 PF06450 Bacterial Na+/H+ antiporter B (NhaB) DA442_RS11585 PF02600 Disulfide bond formation protein DsbB DA442_RS11590 PF03695 Uncharacterised protein family (UPF0149) DA442_RS11590 PF02810 SEC-C motif DA442_RS11595 PF01207 Dihydrouridine synthase (Dus) DA442_RS11600 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS11600 PF00072 Response regulator receiver domain DA442_RS11605 PF02903 Alpha amylase, N-terminal ig-like domain DA442_RS11605 PF00128 Alpha amylase, catalytic domain DA442_RS11610 PF00005 ABC transporter DA442_RS11625 PF04217 Protein of unknown function, DUF412 DA442_RS11630 PF00871 Acetokinase family DA442_RS11635 PF01515 Phosphate acetyl/butaryl transferase DA442_RS11635 PF07085 DRTGG domain DA442_RS11640 PF13194 Domain of unknown function (DUF4010) DA442_RS11650 PF13409 Glutathione S-transferase, N-terminal domain DA442_RS11655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS11655 PF00005 ABC transporter DA442_RS11660 PF00005 ABC transporter DA442_RS11660 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS11665 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS11665 PF12911 N-terminal TM domain of oligopeptide transport permease C DA442_RS11670 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS11675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_RS11680 PF02391 MoaE protein DA442_RS11685 PF02597 ThiS family DA442_RS11690 PF01967 MoaC family DA442_RS11695 PF00994 Probable molybdopterin binding domain DA442_RS11700 PF06463 Molybdenum Cofactor Synthesis C DA442_RS11700 PF04055 Radical SAM superfamily DA442_RS11705 PF01933 Uncharacterised protein family UPF0052 DA442_RS11710 PF01627 Hpt domain DA442_RS11720 PF17757 UvrB interaction domain DA442_RS11720 PF12344 Ultra-violet resistance protein B DA442_RS11720 PF02151 UvrB/uvrC motif DA442_RS11720 PF04851 Type III restriction enzyme, res subunit DA442_RS11720 PF00271 Helicase conserved C-terminal domain DA442_RS11735 PF02508 Rnf-Nqr subunit, membrane protein DA442_RS11740 PF04060 Putative Fe-S cluster DA442_RS11745 PF13375 RnfC Barrel sandwich hybrid domain DA442_RS11745 PF10531 SLBB domain DA442_RS11745 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DA442_RS11745 PF12838 4Fe-4S dicluster domain DA442_RS11750 PF03116 NQR2, RnfD, RnfE family DA442_RS11755 PF04205 FMN-binding domain DA442_RS11760 PF02508 Rnf-Nqr subunit, membrane protein DA442_RS11765 PF00633 Helix-hairpin-helix motif DA442_RS11765 PF10576 Iron-sulfur binding domain of endonuclease III DA442_RS11765 PF00730 HhH-GPD superfamily base excision DNA repair protein DA442_RS11770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_RS11775 PF10952 Protein of unknown function (DUF2753) DA442_RS11780 PF00691 OmpA family DA442_RS11780 PF18393 MotY N-terminal domain DA442_RS11795 PF00929 Exonuclease DA442_RS11800 PF13726 Na+-H+ antiporter family DA442_RS11800 PF03553 Na+/H+ antiporter family DA442_RS11810 PF00462 Glutaredoxin DA442_RS11815 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DA442_RS11815 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DA442_RS11830 PF00171 Aldehyde dehydrogenase family DA442_RS11830 PF00465 Iron-containing alcohol dehydrogenase DA442_RS11835 PF01914 MarC family integral membrane protein DA442_RS11840 PF00520 Ion transport protein DA442_RS11840 PF00027 Cyclic nucleotide-binding domain DA442_RS11845 PF02774 Semialdehyde dehydrogenase, dimerisation domain DA442_RS11845 PF01118 Semialdehyde dehydrogenase, NAD binding domain DA442_RS11850 PF03553 Na+/H+ antiporter family DA442_RS11865 PF04245 37-kD nucleoid-associated bacterial protein DA442_RS11870 PF07208 Protein of unknown function (DUF1414) DA442_RS11875 PF00884 Sulfatase DA442_RS11875 PF11893 Domain of unknown function (DUF3413) DA442_RS11885 PF00850 Histone deacetylase domain DA442_RS11890 PF00106 short chain dehydrogenase DA442_RS11905 PF01751 Toprim domain DA442_RS11905 PF01131 DNA topoisomerase DA442_RS11910 PF00881 Nitroreductase family DA442_RS11915 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DA442_RS11915 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_RS11925 PF00710 Asparaginase, N-terminal DA442_RS11925 PF17763 Glutaminase/Asparaginase C-terminal domain DA442_RS11930 PF07023 Protein of unknown function (DUF1315) DA442_RS11940 PF01641 SelR domain DA442_RS11945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DA442_RS11945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DA442_RS11950 PF01263 Aldose 1-epimerase DA442_RS11955 PF02743 Cache domain DA442_RS11955 PF00672 HAMP domain DA442_RS11955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS11960 PF13847 Methyltransferase domain DA442_RS11980 PF00245 Alkaline phosphatase DA442_RS11990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_RS11995 PF03992 Antibiotic biosynthesis monooxygenase DA442_RS12000 PF05552 Conserved TM helix DA442_RS12000 PF00924 Mechanosensitive ion channel DA442_RS12005 PF03692 Putative zinc- or iron-chelating domain DA442_RS12010 PF04226 Transglycosylase associated protein DA442_RS12015 PF03692 Putative zinc- or iron-chelating domain DA442_RS12025 PF03313 Serine dehydratase alpha chain DA442_RS12030 PF01042 Endoribonuclease L-PSP DA442_RS12040 PF00230 Major intrinsic protein DA442_RS12045 PF02132 RecR protein DA442_RS12045 PF13662 Toprim domain DA442_RS12050 PF02575 YbaB/EbfC DNA-binding family DA442_RS12055 PF12170 DNA polymerase III tau subunit V interacting with alpha DA442_RS12055 PF12169 DNA polymerase III subunits gamma and tau domain III DA442_RS12055 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DA442_RS12060 PF00156 Phosphoribosyl transferase domain DA442_RS12065 PF04304 Protein of unknown function (DUF454) DA442_RS12075 PF00072 Response regulator receiver domain DA442_RS12080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS12080 PF03466 LysR substrate binding domain DA442_RS12085 PF00156 Phosphoribosyl transferase domain DA442_RS12090 PF02674 Colicin V production protein DA442_RS12095 PF05036 Sporulation related domain DA442_RS12100 PF08245 Mur ligase middle domain DA442_RS12100 PF02875 Mur ligase family, glutamate ligase domain DA442_RS12105 PF17848 Acetyl-coA carboxylase zinc finger domain DA442_RS12105 PF01039 Carboxyl transferase domain DA442_RS12110 PF01416 tRNA pseudouridine synthase DA442_RS12120 PF01118 Semialdehyde dehydrogenase, NAD binding domain DA442_RS12120 PF02774 Semialdehyde dehydrogenase, dimerisation domain DA442_RS12125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA442_RS12125 PF11890 Domain of unknown function (DUF3410) DA442_RS12125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA442_RS12135 PF00109 Beta-ketoacyl synthase, N-terminal domain DA442_RS12135 PF02801 Beta-ketoacyl synthase, C-terminal domain DA442_RS12140 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DA442_RS12140 PF01266 FAD dependent oxidoreductase DA442_RS12155 PF08891 YfcL protein DA442_RS12160 PF04315 Elongation factor P hydroxylase DA442_RS12170 PF03458 UPF0126 domain DA442_RS12175 PF01264 Chorismate synthase DA442_RS12180 PF05175 Methyltransferase small domain DA442_RS12190 PF00300 Histidine phosphatase superfamily (branch 1) DA442_RS12205 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DA442_RS12205 PF00378 Enoyl-CoA hydratase/isomerase DA442_RS12205 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DA442_RS12210 PF02803 Thiolase, C-terminal domain DA442_RS12210 PF00108 Thiolase, N-terminal domain DA442_RS12220 PF08281 Sigma-70, region 4 DA442_RS12220 PF04542 Sigma-70 region 2 DA442_RS12230 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DA442_RS12235 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DA442_RS12240 PF04333 MlaA lipoprotein DA442_RS12250 PF03918 Cytochrome C biogenesis protein DA442_RS12255 PF08534 Redoxin DA442_RS12260 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal DA442_RS12260 PF01578 Cytochrome C assembly protein DA442_RS12270 PF04995 Heme exporter protein D (CcmD) DA442_RS12275 PF01578 Cytochrome C assembly protein DA442_RS12280 PF03379 CcmB protein DA442_RS12285 PF00005 ABC transporter DA442_RS12295 PF01584 CheW-like domain DA442_RS12305 PF13614 AAA domain DA442_RS12310 PF00072 Response regulator receiver domain DA442_RS12310 PF01339 CheB methylesterase DA442_RS12315 PF00072 Response regulator receiver domain DA442_RS12315 PF01627 Hpt domain DA442_RS12315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS12315 PF02895 Signal transducing histidine kinase, homodimeric domain DA442_RS12315 PF01584 CheW-like domain DA442_RS12320 PF04344 Chemotaxis phosphatase, CheZ DA442_RS12325 PF00072 Response regulator receiver domain DA442_RS12330 PF04545 Sigma-70, region 4 DA442_RS12330 PF04542 Sigma-70 region 2 DA442_RS12330 PF04539 Sigma-70 region 3 DA442_RS12335 PF10609 NUBPL iron-transfer P-loop NTPase DA442_RS12340 PF00448 SRP54-type protein, GTPase domain DA442_RS12345 PF00771 FHIPEP family DA442_RS12350 PF01312 FlhB HrpN YscU SpaS Family DA442_RS12355 PF01311 Bacterial export proteins, family 1 DA442_RS12360 PF01313 Bacterial export proteins, family 3 DA442_RS12365 PF00813 FliP family DA442_RS12370 PF04347 Flagellar biosynthesis protein, FliO DA442_RS12375 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DA442_RS12380 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DA442_RS12380 PF02154 Flagellar motor switch protein FliM DA442_RS12400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA442_RS12400 PF18269 T3SS EscN ATPase C-terminal domain DA442_RS12410 PF14842 FliG N-terminal domain DA442_RS12410 PF14841 FliG middle domain DA442_RS12410 PF01706 FliG C-terminal domain DA442_RS12415 PF08345 Flagellar M-ring protein C-terminal DA442_RS12415 PF01514 Secretory protein of YscJ/FliF family DA442_RS12420 PF02049 Flagellar hook-basal body complex protein FliE DA442_RS12425 PF00072 Response regulator receiver domain DA442_RS12425 PF02954 Bacterial regulatory protein, Fis family DA442_RS12425 PF00158 Sigma-54 interaction domain DA442_RS12430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS12430 PF13188 PAS domain DA442_RS12430 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS12435 PF02954 Bacterial regulatory protein, Fis family DA442_RS12435 PF00158 Sigma-54 interaction domain DA442_RS12435 PF06490 Flagellar regulatory protein FleQ DA442_RS12440 PF02561 Flagellar protein FliS DA442_RS12450 PF07196 Flagellin hook IN motif DA442_RS12450 PF07195 Flagellar hook-associated protein 2 C-terminus DA442_RS12450 PF02465 Flagellar hook-associated protein 2 N-terminus DA442_RS12455 PF03646 FlaG protein DA442_RS12465 PF07196 Flagellin hook IN motif DA442_RS12465 PF00669 Bacterial flagellin N-terminal helical region DA442_RS12465 PF00700 Bacterial flagellin C-terminal helical region DA442_RS12475 PF00700 Bacterial flagellin C-terminal helical region DA442_RS12475 PF00669 Bacterial flagellin N-terminal helical region DA442_RS12475 PF07196 Flagellin hook IN motif DA442_RS12480 PF04261 Dyp-type peroxidase family DA442_RS12485 PF11143 Protein of unknown function (DUF2919) DA442_RS12510 PF03960 ArsC family DA442_RS12515 PF07687 Peptidase dimerisation domain DA442_RS12515 PF01546 Peptidase family M20/M25/M40 DA442_RS12530 PF06804 NlpB/DapX lipoprotein DA442_RS12535 PF00701 Dihydrodipicolinate synthetase family DA442_RS12540 PF01842 ACT domain DA442_RS12545 PF00578 AhpC/TSA family DA442_RS12550 PF01594 AI-2E family transporter DA442_RS12560 PF13181 Tetratricopeptide repeat DA442_RS12560 PF01435 Peptidase family M48 DA442_RS12565 PF03960 ArsC family DA442_RS12570 PF03358 NADPH-dependent FMN reductase DA442_RS12585 PF00860 Permease family DA442_RS12595 PF00586 AIR synthase related protein, N-terminal domain DA442_RS12595 PF02769 AIR synthase related protein, C-terminal domain DA442_RS12600 PF00551 Formyl transferase DA442_RS12605 PF13230 Glutamine amidotransferases class-II DA442_RS12610 PF13580 SIS domain DA442_RS12615 PF09317 Domain of unknown function (DUF1974) DA442_RS12615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DA442_RS12615 PF02770 Acyl-CoA dehydrogenase, middle domain DA442_RS12615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DA442_RS12620 PF00916 Sulfate permease family DA442_RS12620 PF01740 STAS domain DA442_RS12645 PF00929 Exonuclease DA442_RS12650 PF00075 RNase H DA442_RS12655 PF08241 Methyltransferase domain DA442_RS12660 PF00753 Metallo-beta-lactamase superfamily DA442_RS12660 PF16123 Hydroxyacylglutathione hydrolase C-terminus DA442_RS12665 PF01476 LysM domain DA442_RS12665 PF01464 Transglycosylase SLT domain DA442_RS12675 PF03372 Endonuclease/Exonuclease/phosphatase family DA442_RS12680 PF00543 Nitrogen regulatory protein P-II DA442_RS12685 PF00034 Cytochrome c DA442_RS12690 PF01171 PP-loop family DA442_RS12690 PF11734 TilS substrate C-terminal domain DA442_RS12690 PF09179 TilS substrate binding domain DA442_RS12695 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DA442_RS12700 PF07733 Bacterial DNA polymerase III alpha NTPase domain DA442_RS12700 PF14579 Helix-hairpin-helix motif DA442_RS12700 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DA442_RS12700 PF01336 OB-fold nucleic acid binding domain DA442_RS12700 PF02811 PHP domain DA442_RS12710 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DA442_RS12710 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_RS12715 PF07977 FabA-like domain DA442_RS12720 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DA442_RS12720 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_RS12725 PF03938 Outer membrane protein (OmpH-like) DA442_RS12730 PF01103 Surface antigen DA442_RS12730 PF07244 Surface antigen variable number repeat DA442_RS12735 PF17820 PDZ domain DA442_RS12735 PF02163 Peptidase family M50 DA442_RS12740 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DA442_RS12740 PF13288 DXP reductoisomerase C-terminal domain DA442_RS12740 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DA442_RS12750 PF01255 Putative undecaprenyl diphosphate synthase DA442_RS12755 PF01765 Ribosome recycling factor DA442_RS12760 PF00696 Amino acid kinase family DA442_RS12765 PF00889 Elongation factor TS DA442_RS12770 PF00318 Ribosomal protein S2 DA442_RS12775 PF00557 Metallopeptidase family M24 DA442_RS12780 PF01842 ACT domain DA442_RS12780 PF08335 GlnD PII-uridylyltransferase DA442_RS12780 PF01909 Nucleotidyltransferase domain DA442_RS12780 PF01966 HD domain DA442_RS12785 PF11944 Protein of unknown function (DUF3461) DA442_RS12790 PF00849 RNA pseudouridylate synthase DA442_RS12795 PF04287 tRNA pseudouridine synthase C DA442_RS12820 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DA442_RS12825 PF03806 AbgT putative transporter family DA442_RS12830 PF00444 Ribosomal protein L36 DA442_RS12835 PF01197 Ribosomal protein L31 DA442_RS12840 PF18389 TrmO C-terminal domain DA442_RS12840 PF01980 tRNA-methyltransferase O DA442_RS12845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DA442_RS12845 PF03129 Anticodon binding domain DA442_RS12845 PF04073 Aminoacyl-tRNA editing domain DA442_RS12855 PF06786 Uncharacterised protein family (UPF0253) DA442_RS12865 PF00209 Sodium:neurotransmitter symporter family DA442_RS12880 PF01272 Transcription elongation factor, GreA/GreB, C-term DA442_RS12880 PF03449 Transcription elongation factor, N-terminal DA442_RS12885 PF16124 RecQ zinc-binding DA442_RS12885 PF00270 DEAD/DEAH box helicase DA442_RS12885 PF00271 Helicase conserved C-terminal domain DA442_RS12885 PF00570 HRDC domain DA442_RS12885 PF09382 RQC domain DA442_RS12890 PF11798 IMS family HHH motif DA442_RS12890 PF11799 impB/mucB/samB family C-terminal domain DA442_RS12890 PF00817 impB/mucB/samB family DA442_RS12905 PF02424 ApbE family DA442_RS12910 PF00111 2Fe-2S iron-sulfur cluster binding domain DA442_RS12910 PF00175 Oxidoreductase NAD-binding domain DA442_RS12910 PF00970 Oxidoreductase FAD-binding domain DA442_RS12915 PF02508 Rnf-Nqr subunit, membrane protein DA442_RS12920 PF02508 Rnf-Nqr subunit, membrane protein DA442_RS12925 PF04205 FMN-binding domain DA442_RS12930 PF03116 NQR2, RnfD, RnfE family DA442_RS12935 PF11973 NQRA C-terminal domain DA442_RS12935 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) DA442_RS12940 PF01722 BolA-like protein DA442_RS12945 PF05175 Methyltransferase small domain DA442_RS12950 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DA442_RS12950 PF03923 Uncharacterized lipoprotein DA442_RS12955 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DA442_RS12960 PF07690 Major Facilitator Superfamily DA442_RS12970 PF04542 Sigma-70 region 2 DA442_RS12970 PF04545 Sigma-70, region 4 DA442_RS12990 PF03502 Nucleoside-specific channel-forming protein, Tsx DA442_RS12995 PF08546 Ketopantoate reductase PanE/ApbA C terminal DA442_RS12995 PF02558 Ketopantoate reductase PanE/ApbA DA442_RS13000 PF01965 DJ-1/PfpI family DA442_RS13005 PF00266 Aminotransferase class-V DA442_RS13010 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS13010 PF17158 Membrane-associated sensor, integral membrane domain DA442_RS13015 PF02657 Fe-S metabolism associated domain DA442_RS13020 PF00899 ThiF family DA442_RS13025 PF03562 MltA specific insert domain DA442_RS13025 PF06725 3D domain DA442_RS13040 PF00696 Amino acid kinase family DA442_RS13040 PF00583 Acetyltransferase (GNAT) family DA442_RS13065 PF13538 UvrD-like helicase C-terminal domain DA442_RS13070 PF12705 PD-(D/E)XK nuclease superfamily DA442_RS13070 PF00580 UvrD/REP helicase N-terminal domain DA442_RS13070 PF13361 UvrD-like helicase C-terminal domain DA442_RS13080 PF17946 RecC C-terminal domain DA442_RS13085 PF00884 Sulfatase DA442_RS13085 PF11893 Domain of unknown function (DUF3413) DA442_RS13095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS13095 PF03466 LysR substrate binding domain DA442_RS13100 PF07130 YebG protein DA442_RS13105 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle DA442_RS13105 PF14602 Hexapeptide repeat of succinyl-transferase DA442_RS13110 PF03009 Glycerophosphoryl diester phosphodiesterase family DA442_RS13115 PF07690 Major Facilitator Superfamily DA442_RS13130 PF00230 Major intrinsic protein DA442_RS13135 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DA442_RS13135 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DA442_RS13140 PF00455 DeoR C terminal sensor domain DA442_RS13140 PF08220 DeoR-like helix-turn-helix domain DA442_RS13145 PF01266 FAD dependent oxidoreductase DA442_RS13145 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DA442_RS13150 PF01544 CorA-like Mg2+ transporter protein DA442_RS13165 PF01588 Putative tRNA binding domain DA442_RS13170 PF00356 Bacterial regulatory proteins, lacI family DA442_RS13185 PF00356 Bacterial regulatory proteins, lacI family DA442_RS13190 PF01263 Aldose 1-epimerase DA442_RS13195 PF00288 GHMP kinases N terminal domain DA442_RS13195 PF08544 GHMP kinases C terminal DA442_RS13195 PF10509 Galactokinase galactose-binding signature DA442_RS13200 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DA442_RS13200 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DA442_RS13205 PF16363 GDP-mannose 4,6 dehydratase DA442_RS13215 PF00356 Bacterial regulatory proteins, lacI family DA442_RS13220 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DA442_RS13220 PF02929 Beta galactosidase small chain DA442_RS13220 PF16353 Domain of unknown function(DUF4981) DA442_RS13220 PF02837 Glycosyl hydrolases family 2, sugar binding domain DA442_RS13220 PF00703 Glycosyl hydrolases family 2 DA442_RS13225 PF04074 YhcH/YjgK/YiaL DA442_RS13230 PF13520 Amino acid permease DA442_RS13235 PF03466 LysR substrate binding domain DA442_RS13235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS13265 PF00437 Type II/IV secretion system protein DA442_RS13295 PF13629 Pilus formation protein N terminal region DA442_RS13295 PF00263 Bacterial type II and III secretion system protein DA442_RS13295 PF04972 BON domain DA442_RS13320 PF02805 Metal binding domain of Ada DA442_RS13320 PF12833 Helix-turn-helix domain DA442_RS13325 PF00501 AMP-binding enzyme DA442_RS13335 PF03466 LysR substrate binding domain DA442_RS13335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS13340 PF03764 Elongation factor G, domain IV DA442_RS13340 PF00679 Elongation factor G C-terminus DA442_RS13340 PF14492 Elongation Factor G, domain II DA442_RS13340 PF00009 Elongation factor Tu GTP binding domain DA442_RS13340 PF03144 Elongation factor Tu domain 2 DA442_RS13345 PF18073 Rubredoxin metal binding domain DA442_RS13355 PF18429 Domain of unknown function (DUF5609) DA442_RS13365 PF01048 Phosphorylase superfamily DA442_RS13370 PF01676 Metalloenzyme superfamily DA442_RS13375 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DA442_RS13375 PF00591 Glycosyl transferase family, a/b domain DA442_RS13375 PF02885 Glycosyl transferase family, helical bundle domain DA442_RS13380 PF01791 DeoC/LacD family aldolase DA442_RS13385 PF07662 Na+ dependent nucleoside transporter C-terminus DA442_RS13385 PF01773 Na+ dependent nucleoside transporter N-terminus DA442_RS13385 PF07670 Nucleoside recognition DA442_RS13390 PF01026 TatD related DNase DA442_RS13400 PF00009 Elongation factor Tu GTP binding domain DA442_RS13400 PF03144 Elongation factor Tu domain 2 DA442_RS13400 PF16658 Class II release factor RF3, C-terminal domain DA442_RS13405 PF01381 Helix-turn-helix DA442_RS13405 PF00717 Peptidase S24-like DA442_RS13450 PF06122 Conjugative relaxosome accessory transposon protein DA442_RS13460 PF13737 Transposase DDE domain DA442_RS13465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS13465 PF00672 HAMP domain DA442_RS13465 PF12729 Four helix bundle sensory module for signal transduction DA442_RS13490 PF04002 RadC-like JAB domain DA442_RS13495 PF00092 von Willebrand factor type A domain DA442_RS13515 PF08406 CbbQ/NirQ/NorQ C-terminal DA442_RS13515 PF07728 AAA domain (dynein-related subfamily) DA442_RS13530 PF00436 Single-strand binding protein family DA442_RS13555 PF06986 Type-1V conjugative transfer system mating pair stabilisation DA442_RS13560 PF06834 TraU protein DA442_RS13570 PF10502 Signal peptidase, peptidase S26 DA442_RS13585 PF10411 Disulfide bond isomerase protein N-terminus DA442_RS13585 PF13098 Thioredoxin-like domain DA442_RS13640 PF01381 Helix-turn-helix DA442_RS13725 PF00929 Exonuclease DA442_RS13725 PF02811 PHP domain DA442_RS13725 PF07733 Bacterial DNA polymerase III alpha NTPase domain DA442_RS13725 PF14579 Helix-hairpin-helix motif DA442_RS13725 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DA442_RS13725 PF11490 DNA polymerase III polC-type N-terminus II DA442_RS13735 PF00717 Peptidase S24-like DA442_RS13740 PF13438 Domain of unknown function (DUF4113) DA442_RS13740 PF11799 impB/mucB/samB family C-terminal domain DA442_RS13740 PF00817 impB/mucB/samB family DA442_RS13770 PF07804 HipA-like C-terminal domain DA442_RS13770 PF13657 HipA N-terminal domain DA442_RS13775 PF01381 Helix-turn-helix DA442_RS13780 PF16658 Class II release factor RF3, C-terminal domain DA442_RS13780 PF03144 Elongation factor Tu domain 2 DA442_RS13780 PF00009 Elongation factor Tu GTP binding domain DA442_RS13800 PF13508 Acetyltransferase (GNAT) domain DA442_RS13805 PF02036 SCP-2 sterol transfer family DA442_RS13810 PF00563 EAL domain DA442_RS13810 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS13810 PF03707 Bacterial signalling protein N terminal repeat DA442_RS13815 PF01136 Peptidase family U32 DA442_RS13820 PF01136 Peptidase family U32 DA442_RS13825 PF01554 MatE DA442_RS13835 PF07719 Tetratricopeptide repeat DA442_RS13835 PF13181 Tetratricopeptide repeat DA442_RS13840 PF00575 S1 RNA binding domain DA442_RS13840 PF03725 3' exoribonuclease family, domain 2 DA442_RS13840 PF01138 3' exoribonuclease family, domain 1 DA442_RS13840 PF00013 KH domain DA442_RS13840 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DA442_RS13845 PF00312 Ribosomal protein S15 DA442_RS13850 PF09157 Pseudouridine synthase II TruB, C-terminal DA442_RS13850 PF01509 TruB family pseudouridylate synthase (N terminal domain) DA442_RS13850 PF16198 tRNA pseudouridylate synthase B C-terminal domain DA442_RS13855 PF02033 Ribosome-binding factor A DA442_RS13860 PF04760 Translation initiation factor IF-2, N-terminal region DA442_RS13860 PF08364 Bacterial translation initiation factor IF-2 associated region DA442_RS13860 PF11987 Translation-initiation factor 2 DA442_RS13860 PF00009 Elongation factor Tu GTP binding domain DA442_RS13865 PF13184 NusA-like KH domain DA442_RS13865 PF08529 NusA N-terminal domain DA442_RS13865 PF00575 S1 RNA binding domain DA442_RS13870 PF02576 RimP N-terminal domain DA442_RS13870 PF17384 RimP C-terminal SH3 domain DA442_RS13885 PF03840 Preprotein translocase SecG subunit DA442_RS13895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DA442_RS13895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DA442_RS13895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DA442_RS13895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DA442_RS13900 PF00809 Pterin binding enzyme DA442_RS13905 PF01434 Peptidase family M41 DA442_RS13905 PF06480 FtsH Extracellular DA442_RS13905 PF00004 ATPase family associated with various cellular activities (AAA) DA442_RS13905 PF17862 AAA+ lid domain DA442_RS13910 PF01728 FtsJ-like methyltransferase DA442_RS13915 PF01985 CRS1 / YhbY (CRM) domain DA442_RS13920 PF01272 Transcription elongation factor, GreA/GreB, C-term DA442_RS13920 PF03449 Transcription elongation factor, N-terminal DA442_RS13925 PF13609 Gram-negative porin DA442_RS13930 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DA442_RS13940 PF00579 tRNA synthetases class I (W and Y) DA442_RS13945 PF08525 Opacity-associated protein A N-terminal motif DA442_RS13945 PF01551 Peptidase family M23 DA442_RS13945 PF01476 LysM domain DA442_RS13960 PF01521 Iron-sulphur cluster biosynthesis DA442_RS13965 PF00202 Aminotransferase class-III DA442_RS13975 PF08468 Methyltransferase small domain N-terminal DA442_RS13975 PF05175 Methyltransferase small domain DA442_RS13985 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS13985 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_RS13985 PF00072 Response regulator receiver domain DA442_RS13985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS13990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_RS13995 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS14000 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS14000 PF12911 N-terminal TM domain of oligopeptide transport permease C DA442_RS14005 PF00005 ABC transporter DA442_RS14005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS14010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS14010 PF00005 ABC transporter DA442_RS14020 PF01869 BadF/BadG/BcrA/BcrD ATPase family DA442_RS14025 PF00728 Glycosyl hydrolase family 20, catalytic domain DA442_RS14025 PF02838 Glycosyl hydrolase family 20, domain 2 DA442_RS14030 PF06165 Glycosyltransferase family 36 DA442_RS14030 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DA442_RS14035 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DA442_RS14035 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DA442_RS14035 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DA442_RS14035 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DA442_RS14040 PF08402 TOBE domain DA442_RS14040 PF00005 ABC transporter DA442_RS14050 PF13416 Bacterial extracellular solute-binding protein DA442_RS14055 PF00909 Ammonium Transporter Family DA442_RS14060 PF00543 Nitrogen regulatory protein P-II DA442_RS14065 PF06062 Uncharacterised protein family (UPF0231) DA442_RS14075 PF01734 Patatin-like phospholipase DA442_RS14080 PF00905 Penicillin binding protein transpeptidase domain DA442_RS14080 PF00912 Transglycosylase DA442_RS14080 PF14814 Bifunctional transglycosylase second domain DA442_RS14085 PF00271 Helicase conserved C-terminal domain DA442_RS14085 PF04408 Helicase associated domain (HA2) DA442_RS14085 PF00270 DEAD/DEAH box helicase DA442_RS14085 PF08482 ATP-dependent helicase C-terminal DA442_RS14090 PF17746 SfsA N-terminal OB domain DA442_RS14090 PF03749 Sugar fermentation stimulation protein RE domain DA442_RS14095 PF01258 Prokaryotic dksA/traR C4-type zinc finger DA442_RS14105 PF00749 tRNA synthetases class I (E and Q), catalytic domain DA442_RS14115 PF01743 Poly A polymerase head domain DA442_RS14115 PF12626 Polymerase A arginine-rich C-terminus DA442_RS14115 PF12627 Probable RNA and SrmB- binding site of polymerase A DA442_RS14120 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DA442_RS14125 PF02548 Ketopantoate hydroxymethyltransferase DA442_RS14130 PF02569 Pantoate-beta-alanine ligase DA442_RS14140 PF03279 Bacterial lipid A biosynthesis acyltransferase DA442_RS14150 PF01061 ABC-2 type transporter DA442_RS14155 PF00005 ABC transporter DA442_RS14165 PF00916 Sulfate permease family DA442_RS14165 PF01740 STAS domain DA442_RS14170 PF00484 Carbonic anhydrase DA442_RS14175 PF00156 Phosphoribosyl transferase domain DA442_RS14180 PF00440 Bacterial regulatory proteins, tetR family DA442_RS14185 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_RS14185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DA442_RS14190 PF02817 e3 binding domain DA442_RS14190 PF00364 Biotin-requiring enzyme DA442_RS14190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DA442_RS14195 PF00456 Transketolase, thiamine diphosphate binding domain DA442_RS14195 PF17831 Pyruvate dehydrogenase E1 component middle domain DA442_RS14200 PF07729 FCD domain DA442_RS14200 PF00392 Bacterial regulatory proteins, gntR family DA442_RS14210 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DA442_RS14210 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DA442_RS14215 PF07963 Prokaryotic N-terminal methylation motif DA442_RS14215 PF00114 Pilin (bacterial filament) DA442_RS14220 PF00437 Type II/IV secretion system protein DA442_RS14220 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DA442_RS14225 PF00482 Type II secretion system (T2SS), protein F DA442_RS14230 PF01478 Type IV leader peptidase family DA442_RS14230 PF06750 Bacterial Peptidase A24 N-terminal domain DA442_RS14235 PF01121 Dephospho-CoA kinase DA442_RS14240 PF07072 Cell division protein DA442_RS14245 PF03884 DNA gyrase inhibitor YacG DA442_RS14250 PF01245 Ribosomal protein L19 DA442_RS14255 PF01746 tRNA (Guanine-1)-methyltransferase DA442_RS14260 PF01782 RimM N-terminal domain DA442_RS14260 PF05239 PRC-barrel domain DA442_RS14265 PF00886 Ribosomal protein S16 DA442_RS14270 PF02978 Signal peptide binding domain DA442_RS14270 PF02881 SRP54-type protein, helical bundle domain DA442_RS14270 PF00448 SRP54-type protein, GTPase domain DA442_RS14275 PF01578 Cytochrome C assembly protein DA442_RS14280 PF00571 CBS domain DA442_RS14280 PF03471 Transporter associated domain DA442_RS14280 PF01595 Cyclin M transmembrane N-terminal domain DA442_RS14285 PF02664 S-Ribosylhomocysteinase (LuxS) DA442_RS14295 PF04262 Glutamate-cysteine ligase DA442_RS14300 PF00675 Insulinase (Peptidase family M16) DA442_RS14300 PF05193 Peptidase M16 inactive domain DA442_RS14305 PF09335 SNARE associated Golgi protein DA442_RS14310 PF08240 Alcohol dehydrogenase GroES-like domain DA442_RS14310 PF00107 Zinc-binding dehydrogenase DA442_RS14315 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit DA442_RS14320 PF02436 Conserved carboxylase domain DA442_RS14320 PF00682 HMGL-like DA442_RS14320 PF00364 Biotin-requiring enzyme DA442_RS14325 PF04277 Oxaloacetate decarboxylase, gamma chain DA442_RS14380 PF02599 Global regulator protein family DA442_RS14385 PF01842 ACT domain DA442_RS14385 PF00696 Amino acid kinase family DA442_RS14385 PF13840 ACT domain DA442_RS14390 PF02272 DHHA1 domain DA442_RS14390 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DA442_RS14390 PF01411 tRNA synthetases class II (A) DA442_RS14395 PF02631 RecX family DA442_RS14405 PF02464 Competence-damaged protein DA442_RS14410 PF00488 MutS domain V DA442_RS14410 PF05190 MutS family domain IV DA442_RS14410 PF05188 MutS domain II DA442_RS14410 PF05192 MutS domain III DA442_RS14410 PF01624 MutS domain I DA442_RS14420 PF01476 LysM domain DA442_RS14420 PF01551 Peptidase family M23 DA442_RS14430 PF01975 Survival protein SurE DA442_RS14435 PF01142 tRNA pseudouridine synthase D (TruD) DA442_RS14440 PF02542 YgbB family DA442_RS14445 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DA442_RS14450 PF04977 Septum formation initiator DA442_RS14455 PF00113 Enolase, C-terminal TIM barrel domain DA442_RS14455 PF03952 Enolase, N-terminal domain DA442_RS14460 PF06418 CTP synthase N-terminus DA442_RS14460 PF00117 Glutamine amidotransferase class-I DA442_RS14465 PF03819 MazG nucleotide pyrophosphohydrolase domain DA442_RS14470 PF13291 ACT domain DA442_RS14470 PF04607 Region found in RelA / SpoT proteins DA442_RS14470 PF02824 TGS domain DA442_RS14480 PF05958 tRNA (Uracil-5-)-methyltransferase DA442_RS14480 PF01938 TRAM domain DA442_RS14490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS14490 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DA442_RS14490 PF00072 Response regulator receiver domain DA442_RS14490 PF01627 Hpt domain DA442_RS14490 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS14490 PF00672 HAMP domain DA442_RS14495 PF01648 4'-phosphopantetheinyl transferase superfamily DA442_RS14500 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DA442_RS14505 PF11967 Recombination protein O N terminal DA442_RS14505 PF02565 Recombination protein O C terminal DA442_RS14510 PF07650 KH domain DA442_RS14510 PF01926 50S ribosome-binding GTPase DA442_RS14515 PF00035 Double-stranded RNA binding motif DA442_RS14515 PF14622 Ribonuclease-III-like DA442_RS14520 PF10502 Signal peptidase, peptidase S26 DA442_RS14525 PF00679 Elongation factor G C-terminus DA442_RS14525 PF03144 Elongation factor Tu domain 2 DA442_RS14525 PF06421 GTP-binding protein LepA C-terminus DA442_RS14525 PF00009 Elongation factor Tu GTP binding domain DA442_RS14535 PF17188 MucB/RseB C-terminal domain DA442_RS14535 PF03888 MucB/RseB N-terminal domain DA442_RS14540 PF03872 Anti sigma-E protein RseA, N-terminal domain DA442_RS14540 PF03873 Anti sigma-E protein RseA, C-terminal domain DA442_RS14545 PF08281 Sigma-70, region 4 DA442_RS14545 PF04542 Sigma-70 region 2 DA442_RS14555 PF02910 Fumarate reductase flavoprotein C-term DA442_RS14555 PF00890 FAD binding domain DA442_RS14565 PF03937 Flavinator of succinate dehydrogenase DA442_RS14570 PF01571 Aminomethyltransferase folate-binding domain DA442_RS14585 PF01494 FAD binding domain DA442_RS14590 PF01494 FAD binding domain DA442_RS14595 PF03695 Uncharacterised protein family (UPF0149) DA442_RS14605 PF05164 Cell division protein ZapA DA442_RS14615 PF01812 5-formyltetrahydrofolate cyclo-ligase family DA442_RS14620 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DA442_RS14625 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA442_RS14625 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA442_RS14625 PF01842 ACT domain DA442_RS14630 PF04402 Protein of unknown function (DUF541) DA442_RS14635 PF03466 LysR substrate binding domain DA442_RS14635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS14640 PF01810 LysE type translocator DA442_RS14645 PF04073 Aminoacyl-tRNA editing domain DA442_RS14650 PF05552 Conserved TM helix DA442_RS14650 PF00924 Mechanosensitive ion channel DA442_RS14655 PF01116 Fructose-bisphosphate aldolase class-II DA442_RS14660 PF00162 Phosphoglycerate kinase DA442_RS14665 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DA442_RS14665 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DA442_RS14670 PF07715 TonB-dependent Receptor Plug Domain DA442_RS14670 PF00593 TonB dependent receptor DA442_RS14675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS14675 PF03466 LysR substrate binding domain DA442_RS14680 PF00456 Transketolase, thiamine diphosphate binding domain DA442_RS14680 PF02780 Transketolase, C-terminal domain DA442_RS14680 PF02779 Transketolase, pyrimidine binding domain DA442_RS14690 PF02772 S-adenosylmethionine synthetase, central domain DA442_RS14690 PF02773 S-adenosylmethionine synthetase, C-terminal domain DA442_RS14690 PF00438 S-adenosylmethionine synthetase, N-terminal domain DA442_RS14700 PF10263 SprT-like family DA442_RS14700 PF17283 SprT-like zinc ribbon domain DA442_RS14705 PF04231 Endonuclease I DA442_RS14710 PF04452 RNA methyltransferase DA442_RS14715 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DA442_RS14715 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DA442_RS14720 PF02622 Uncharacterized ACR, COG1678 DA442_RS14725 PF03652 Holliday junction resolvase DA442_RS14730 PF00437 Type II/IV secretion system protein DA442_RS14735 PF00437 Type II/IV secretion system protein DA442_RS14740 PF01168 Alanine racemase, N-terminal domain DA442_RS14745 PF14748 Pyrroline-5-carboxylate reductase dimerisation DA442_RS14745 PF03807 NADP oxidoreductase coenzyme F420-dependent DA442_RS14750 PF02325 YGGT family DA442_RS14765 PF01725 Ham1 family DA442_RS14770 PF06969 HemN C-terminal domain DA442_RS14770 PF04055 Radical SAM superfamily DA442_RS14775 PF04960 Glutaminase DA442_RS14785 PF02390 Putative methyltransferase DA442_RS14790 PF14815 NUDIX domain DA442_RS14790 PF00730 HhH-GPD superfamily base excision DNA repair protein DA442_RS14790 PF00633 Helix-hairpin-helix motif DA442_RS14795 PF04362 Bacterial Fe(2+) trafficking DA442_RS14800 PF01464 Transglycosylase SLT domain DA442_RS14800 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DA442_RS14840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS14840 PF17200 Single Cache domain 2 DA442_RS14840 PF00672 HAMP domain DA442_RS14870 PF00171 Aldehyde dehydrogenase family DA442_RS14920 PF00072 Response regulator receiver domain DA442_RS14925 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA442_RS14925 PF00356 Bacterial regulatory proteins, lacI family DA442_RS14930 PF04794 YdjC-like protein DA442_RS14935 PF11975 Family 4 glycosyl hydrolase C-terminal domain DA442_RS14935 PF02056 Family 4 glycosyl hydrolase DA442_RS14940 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DA442_RS14945 PF02378 Phosphotransferase system, EIIC DA442_RS14955 PF01522 Polysaccharide deacetylase DA442_RS14970 PF00106 short chain dehydrogenase DA442_RS14975 PF10011 Predicted membrane protein (DUF2254) DA442_RS14985 PF03739 Lipopolysaccharide export system permease LptF/LptG DA442_RS14990 PF03739 Lipopolysaccharide export system permease LptF/LptG DA442_RS14995 PF00883 Cytosol aminopeptidase family, catalytic domain DA442_RS14995 PF02789 Cytosol aminopeptidase family, N-terminal domain DA442_RS15000 PF04364 DNA polymerase III chi subunit, HolC DA442_RS15005 PF00133 tRNA synthetases class I (I, L, M and V) DA442_RS15005 PF08264 Anticodon-binding domain of tRNA DA442_RS15005 PF10458 Valyl tRNA synthetase tRNA binding arm DA442_RS15015 PF00583 Acetyltransferase (GNAT) family DA442_RS15025 PF06877 Regulator of ribonuclease activity B DA442_RS15040 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DA442_RS15040 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DA442_RS15050 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DA442_RS15050 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DA442_RS15055 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DA442_RS15055 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DA442_RS15060 PF01042 Endoribonuclease L-PSP DA442_RS15065 PF01553 Acyltransferase DA442_RS15070 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DA442_RS15075 PF01722 BolA-like protein DA442_RS15085 PF05494 MlaC protein DA442_RS15090 PF02470 MlaD protein DA442_RS15095 PF02405 Permease MlaE DA442_RS15100 PF00005 ABC transporter DA442_RS15105 PF01699 Sodium/calcium exchanger protein DA442_RS15110 PF00571 CBS domain DA442_RS15110 PF01380 SIS domain DA442_RS15120 PF03968 OstA-like protein DA442_RS15125 PF12399 Branched-chain amino acid ATP-binding cassette transporter DA442_RS15125 PF00005 ABC transporter DA442_RS15130 PF04552 Sigma-54, DNA binding domain DA442_RS15130 PF04963 Sigma-54 factor, core binding domain DA442_RS15130 PF00309 Sigma-54 factor, Activator interacting domain (AID) DA442_RS15135 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DA442_RS15140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA442_RS15145 PF03668 P-loop ATPase protein family DA442_RS15150 PF00381 PTS HPr component phosphorylation site DA442_RS15155 PF03448 MgtE intracellular N domain DA442_RS15155 PF00571 CBS domain DA442_RS15155 PF01769 Divalent cation transporter DA442_RS15160 PF01523 Putative modulator of DNA gyrase DA442_RS15165 PF04751 Protein of unknown function (DUF615) DA442_RS15170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA442_RS15170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA442_RS15175 PF00849 RNA pseudouridylate synthase DA442_RS15190 PF18337 RapA N-terminal Tudor like domain DA442_RS15190 PF18339 RapA N-terminal Tudor like domain 1 DA442_RS15190 PF00176 SNF2 family N-terminal domain DA442_RS15190 PF12137 RNA polymerase recycling family C-terminal DA442_RS15190 PF00271 Helicase conserved C-terminal domain DA442_RS15195 PF02562 PhoH-like protein DA442_RS15195 PF13638 PIN domain DA442_RS15200 PF01523 Putative modulator of DNA gyrase DA442_RS15205 PF00795 Carbon-nitrogen hydrolase DA442_RS15210 PF13502 AsmA-like C-terminal region DA442_RS15210 PF13116 Protein of unknown function DA442_RS15215 PF00575 S1 RNA binding domain DA442_RS15215 PF10150 Ribonuclease E/G family DA442_RS15220 PF02545 Maf-like protein DA442_RS15225 PF04093 rod shape-determining protein MreD DA442_RS15230 PF04085 rod shape-determining protein MreC DA442_RS15270 PF07963 Prokaryotic N-terminal methylation motif DA442_RS15280 PF00482 Type II secretion system (T2SS), protein F DA442_RS15285 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DA442_RS15285 PF00437 Type II/IV secretion system protein DA442_RS15295 PF01471 Putative peptidoglycan binding domain DA442_RS15295 PF13401 AAA domain DA442_RS15300 PF11741 AMIN domain DA442_RS15300 PF00263 Bacterial type II and III secretion system protein DA442_RS15300 PF03958 Bacterial type II/III secretion system short domain DA442_RS15300 PF07660 Secretin and TonB N terminus short domain DA442_RS15320 PF17157 Gammaproteobacterial periplasmic sensor domain DA442_RS15320 PF00563 EAL domain DA442_RS15320 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS15325 PF00436 Single-strand binding protein family DA442_RS15330 PF00196 Bacterial regulatory proteins, luxR family DA442_RS15335 PF00483 Nucleotidyl transferase DA442_RS15340 PF00005 ABC transporter DA442_RS15340 PF17755 UvrA DNA-binding domain DA442_RS15340 PF17760 UvrA interaction domain DA442_RS15350 PF00266 Aminotransferase class-V DA442_RS15365 PF00809 Pterin binding enzyme DA442_RS15365 PF02965 Vitamin B12 dependent methionine synthase, activation domain DA442_RS15365 PF02607 B12 binding domain DA442_RS15365 PF02574 Homocysteine S-methyltransferase DA442_RS15365 PF02310 B12 binding domain DA442_RS15370 PF00999 Sodium/hydrogen exchanger family DA442_RS15445 PF01507 Phosphoadenosine phosphosulfate reductase family DA442_RS15450 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DA442_RS15450 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DA442_RS15455 PF00258 Flavodoxin DA442_RS15455 PF00175 Oxidoreductase NAD-binding domain DA442_RS15455 PF00667 FAD binding domain DA442_RS15480 PF01207 Dihydrouridine synthase (Dus) DA442_RS15490 PF01475 Ferric uptake regulator family DA442_RS15500 PF00342 Phosphoglucose isomerase DA442_RS15505 PF01894 Uncharacterised protein family UPF0047 DA442_RS15515 PF00842 Alanine racemase, C-terminal domain DA442_RS15515 PF01168 Alanine racemase, N-terminal domain DA442_RS15520 PF00772 DnaB-like helicase N terminal domain DA442_RS15520 PF03796 DnaB-like helicase C terminal domain DA442_RS15530 PF03948 Ribosomal protein L9, C-terminal domain DA442_RS15530 PF01281 Ribosomal protein L9, N-terminal domain DA442_RS15535 PF01084 Ribosomal protein S18 DA442_RS15540 PF00436 Single-strand binding protein family DA442_RS15545 PF01250 Ribosomal protein S6 DA442_RS15550 PF00834 Ribulose-phosphate 3 epimerase family DA442_RS15555 PF02086 D12 class N6 adenine-specific DNA methyltransferase DA442_RS15565 PF01761 3-dehydroquinate synthase DA442_RS15570 PF01202 Shikimate kinase DA442_RS15575 PF07660 Secretin and TonB N terminus short domain DA442_RS15575 PF03958 Bacterial type II/III secretion system short domain DA442_RS15575 PF00263 Bacterial type II and III secretion system protein DA442_RS15575 PF11741 AMIN domain DA442_RS15580 PF04351 Pilus assembly protein, PilP DA442_RS15590 PF05137 Fimbrial assembly protein (PilN) DA442_RS15600 PF17092 Penicillin-binding protein OB-like domain DA442_RS15600 PF00905 Penicillin binding protein transpeptidase domain DA442_RS15600 PF00912 Transglycosylase DA442_RS15610 PF00462 Glutaredoxin DA442_RS15610 PF08534 Redoxin DA442_RS15625 PF00206 Lyase DA442_RS15625 PF14698 Argininosuccinate lyase C-terminal DA442_RS15625 PF00583 Acetyltransferase (GNAT) family DA442_RS15630 PF00764 Arginosuccinate synthase DA442_RS15635 PF00696 Amino acid kinase family DA442_RS15640 PF02774 Semialdehyde dehydrogenase, dimerisation domain DA442_RS15640 PF01118 Semialdehyde dehydrogenase, NAD binding domain DA442_RS15645 PF07687 Peptidase dimerisation domain DA442_RS15645 PF01546 Peptidase family M20/M25/M40 DA442_RS15650 PF00311 Phosphoenolpyruvate carboxylase DA442_RS15660 PF02219 Methylenetetrahydrofolate reductase DA442_RS15665 PF03447 Homoserine dehydrogenase, NAD binding domain DA442_RS15665 PF00696 Amino acid kinase family DA442_RS15665 PF00742 Homoserine dehydrogenase DA442_RS15670 PF01053 Cys/Met metabolism PLP-dependent enzyme DA442_RS15680 PF00390 Malic enzyme, N-terminal domain DA442_RS15680 PF03949 Malic enzyme, NAD binding domain DA442_RS15685 PF00210 Ferritin-like domain DA442_RS15690 PF04324 BFD-like [2Fe-2S] binding domain DA442_RS15695 PF00009 Elongation factor Tu GTP binding domain DA442_RS15695 PF03144 Elongation factor Tu domain 2 DA442_RS15695 PF03143 Elongation factor Tu C-terminal domain DA442_RS15700 PF03144 Elongation factor Tu domain 2 DA442_RS15700 PF00679 Elongation factor G C-terminus DA442_RS15700 PF00009 Elongation factor Tu GTP binding domain DA442_RS15700 PF03764 Elongation factor G, domain IV DA442_RS15700 PF14492 Elongation Factor G, domain II DA442_RS15705 PF00177 Ribosomal protein S7p/S5e DA442_RS15710 PF00164 Ribosomal protein S12/S23 DA442_RS15715 PF04077 DsrH like protein DA442_RS15720 PF02635 DsrE/DsrF-like family DA442_RS15725 PF02635 DsrE/DsrF-like family DA442_RS15730 PF13309 HTH domain DA442_RS15730 PF08348 YheO-like PAS domain DA442_RS15735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA442_RS15735 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DA442_RS15745 PF04102 SlyX DA442_RS15750 PF01112 Asparaginase DA442_RS15760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA442_RS15770 PF00999 Sodium/hydrogen exchanger family DA442_RS15770 PF02254 TrkA-N domain DA442_RS15775 PF02525 Flavodoxin-like fold DA442_RS15785 PF12848 ABC transporter DA442_RS15785 PF00005 ABC transporter DA442_RS15795 PF00561 alpha/beta hydrolase fold DA442_RS15805 PF00485 Phosphoribulokinase / Uridine kinase family DA442_RS15810 PF00027 Cyclic nucleotide-binding domain DA442_RS15810 PF13545 Crp-like helix-turn-helix domain DA442_RS15820 PF00171 Aldehyde dehydrogenase family DA442_RS15825 PF04958 Arginine N-succinyltransferase beta subunit DA442_RS15830 PF00202 Aminotransferase class-III DA442_RS15835 PF00117 Glutamine amidotransferase class-I DA442_RS15865 PF00579 tRNA synthetases class I (W and Y) DA442_RS15870 PF13419 Haloacid dehalogenase-like hydrolase DA442_RS15875 PF00588 SpoU rRNA Methylase family DA442_RS15875 PF08032 RNA 2'-O ribose methyltransferase substrate binding DA442_RS15880 PF08206 Ribonuclease B OB domain DA442_RS15880 PF17876 Cold shock domain DA442_RS15880 PF08461 Ribonuclease R winged-helix domain DA442_RS15880 PF00773 RNB domain DA442_RS15880 PF00575 S1 RNA binding domain DA442_RS15885 PF02082 Transcriptional regulator DA442_RS15890 PF00970 Oxidoreductase FAD-binding domain DA442_RS15890 PF00175 Oxidoreductase NAD-binding domain DA442_RS15890 PF00042 Globin DA442_RS15895 PF08238 Sel1 repeat DA442_RS15905 PF00709 Adenylosuccinate synthetase DA442_RS15910 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) DA442_RS15915 PF01145 SPFH domain / Band 7 family DA442_RS15920 PF12221 Bacterial membrane protein N terminal DA442_RS15920 PF01145 SPFH domain / Band 7 family DA442_RS15925 PF16360 GTP-binding GTPase Middle Region DA442_RS15925 PF13167 GTP-binding GTPase N-terminal DA442_RS15925 PF01926 50S ribosome-binding GTPase DA442_RS15930 PF17209 Hfq protein DA442_RS15940 PF08676 MutL C terminal dimerisation domain DA442_RS15940 PF01119 DNA mismatch repair protein, C-terminal domain DA442_RS15945 PF01520 N-acetylmuramoyl-L-alanine amidase DA442_RS15950 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DA442_RS15955 PF08331 Domain of unknown function (DUF1730) DA442_RS16025 PF00929 Exonuclease DA442_RS16030 PF03193 RsgA GTPase DA442_RS16035 PF02666 Phosphatidylserine decarboxylase DA442_RS16040 PF00939 Sodium:sulfate symporter transmembrane region DA442_RS16045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS16045 PF00672 HAMP domain DA442_RS16055 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DA442_RS16055 PF01676 Metalloenzyme superfamily DA442_RS16065 PF00581 Rhodanese-like domain DA442_RS16070 PF02556 Preprotein translocase subunit SecB DA442_RS16075 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DA442_RS16075 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DA442_RS16080 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_RS16080 PF06426 Serine acetyltransferase, N-terminal DA442_RS16085 PF01551 Peptidase family M23 DA442_RS16095 PF00440 Bacterial regulatory proteins, tetR family DA442_RS16095 PF08360 QacR-like protein, C-terminal region DA442_RS16105 PF00152 tRNA synthetases class II (D, K and N) DA442_RS16115 PF02910 Fumarate reductase flavoprotein C-term DA442_RS16115 PF00890 FAD binding domain DA442_RS16120 PF13085 2Fe-2S iron-sulfur cluster binding domain DA442_RS16120 PF13183 4Fe-4S dicluster domain DA442_RS16125 PF02300 Fumarate reductase subunit C DA442_RS16130 PF02313 Fumarate reductase subunit D DA442_RS16140 PF01132 Elongation factor P (EF-P) OB domain DA442_RS16140 PF08207 Elongation factor P (EF-P) KOW-like domain DA442_RS16140 PF09285 Elongation factor P, C-terminal DA442_RS16145 PF04055 Radical SAM superfamily DA442_RS16155 PF00842 Alanine racemase, C-terminal domain DA442_RS16155 PF01168 Alanine racemase, N-terminal domain DA442_RS16160 PF02308 MgtC family DA442_RS16170 PF00118 TCP-1/cpn60 chaperonin family DA442_RS16180 PF01554 MatE DA442_RS16185 PF00365 Phosphofructokinase DA442_RS16190 PF16916 Dimerisation domain of Zinc Transporter DA442_RS16190 PF01545 Cation efflux family DA442_RS16195 PF07813 LTXXQ motif family protein DA442_RS16205 PF00486 Transcriptional regulatory protein, C terminal DA442_RS16205 PF00072 Response regulator receiver domain DA442_RS16210 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS16210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS16210 PF16527 Two-component sensor protein CpxA, periplasmic domain DA442_RS16210 PF00672 HAMP domain DA442_RS16215 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DA442_RS16215 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DA442_RS16220 PF00588 SpoU rRNA Methylase family DA442_RS16225 PF04186 FxsA cytoplasmic membrane protein DA442_RS16230 PF10415 Fumarase C C-terminus DA442_RS16230 PF00206 Lyase DA442_RS16235 PF03605 Anaerobic c4-dicarboxylate membrane transporter DA442_RS16240 PF11412 Disulphide bond corrector protein DsbC DA442_RS16240 PF02683 Cytochrome C biogenesis protein transmembrane region DA442_RS16245 PF00072 Response regulator receiver domain DA442_RS16245 PF00196 Bacterial regulatory proteins, luxR family DA442_RS16250 PF03471 Transporter associated domain DA442_RS16250 PF02080 TrkA-C domain DA442_RS16250 PF00999 Sodium/hydrogen exchanger family DA442_RS16260 PF00474 Sodium:solute symporter family DA442_RS16280 PF00206 Lyase DA442_RS16280 PF10415 Fumarase C C-terminus DA442_RS16285 PF00672 HAMP domain DA442_RS16285 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS16285 PF01627 Hpt domain DA442_RS16285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS16285 PF00072 Response regulator receiver domain DA442_RS16290 PF12832 MFS_1 like family DA442_RS16305 PF16177 Acetyl-coenzyme A synthetase N-terminus DA442_RS16305 PF00501 AMP-binding enzyme DA442_RS16305 PF13193 AMP-binding enzyme C-terminal domain DA442_RS16310 PF01220 Dehydroquinase class II DA442_RS16315 PF00364 Biotin-requiring enzyme DA442_RS16320 PF02785 Biotin carboxylase C-terminal domain DA442_RS16320 PF00289 Biotin carboxylase, N-terminal domain DA442_RS16320 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DA442_RS16335 PF01207 Dihydrouridine synthase (Dus) DA442_RS16340 PF02954 Bacterial regulatory protein, Fis family DA442_RS16350 PF00005 ABC transporter DA442_RS16350 PF12848 ABC transporter DA442_RS16355 PF05230 MASE2 domain DA442_RS16355 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS16430 PF01276 Orn/Lys/Arg decarboxylase, major domain DA442_RS16430 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DA442_RS16430 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DA442_RS16435 PF13520 Amino acid permease DA442_RS16445 PF00486 Transcriptional regulatory protein, C terminal DA442_RS16445 PF18500 CadC C-terminal domain 1 DA442_RS16450 PF13411 MerR HTH family regulatory protein DA442_RS16460 PF02142 MGS-like domain DA442_RS16460 PF01808 AICARFT/IMPCHase bienzyme DA442_RS16470 PF02844 Phosphoribosylglycinamide synthetase, N domain DA442_RS16470 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DA442_RS16470 PF02843 Phosphoribosylglycinamide synthetase, C domain DA442_RS16480 PF00216 Bacterial DNA-binding protein DA442_RS16485 PF01595 Cyclin M transmembrane N-terminal domain DA442_RS16485 PF00571 CBS domain DA442_RS16490 PF04222 Protein of unknown function (DUF416) DA442_RS16495 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA442_RS16500 PF03167 Uracil DNA glycosylase superfamily DA442_RS16505 PF01208 Uroporphyrinogen decarboxylase (URO-D) DA442_RS16520 PF00293 NUDIX domain DA442_RS16520 PF09297 NADH pyrophosphatase zinc ribbon domain DA442_RS16525 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DA442_RS16530 PF04983 RNA polymerase Rpb1, domain 3 DA442_RS16530 PF05000 RNA polymerase Rpb1, domain 4 DA442_RS16530 PF04998 RNA polymerase Rpb1, domain 5 DA442_RS16530 PF00623 RNA polymerase Rpb1, domain 2 DA442_RS16530 PF04997 RNA polymerase Rpb1, domain 1 DA442_RS16535 PF04561 RNA polymerase Rpb2, domain 2 DA442_RS16535 PF00562 RNA polymerase Rpb2, domain 6 DA442_RS16535 PF04560 RNA polymerase Rpb2, domain 7 DA442_RS16535 PF04563 RNA polymerase beta subunit DA442_RS16535 PF04565 RNA polymerase Rpb2, domain 3 DA442_RS16535 PF10385 RNA polymerase beta subunit external 1 domain DA442_RS16540 PF16320 Ribosomal protein L7/L12 dimerisation domain DA442_RS16540 PF00542 Ribosomal protein L7/L12 C-terminal domain DA442_RS16545 PF00466 Ribosomal protein L10 DA442_RS16550 PF00687 Ribosomal protein L1p/L10e family DA442_RS16555 PF00298 Ribosomal protein L11, RNA binding domain DA442_RS16555 PF03946 Ribosomal protein L11, N-terminal domain DA442_RS16560 PF00467 KOW motif DA442_RS16560 PF02357 Transcription termination factor nusG DA442_RS16565 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DA442_RS16575 PF00009 Elongation factor Tu GTP binding domain DA442_RS16575 PF03144 Elongation factor Tu domain 2 DA442_RS16575 PF03143 Elongation factor Tu C-terminal domain DA442_RS16600 PF00485 Phosphoribulokinase / Uridine kinase family DA442_RS16605 PF03099 Biotin/lipoate A/B protein ligase family DA442_RS16605 PF02237 Biotin protein ligase C terminal domain DA442_RS16605 PF08279 HTH domain DA442_RS16610 PF01565 FAD binding domain DA442_RS16610 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DA442_RS16620 PF13091 PLD-like domain DA442_RS16680 PF01177 Asp/Glu/Hydantoin racemase DA442_RS16690 PF07715 TonB-dependent Receptor Plug Domain DA442_RS16690 PF00593 TonB dependent receptor DA442_RS16695 PF05958 tRNA (Uracil-5-)-methyltransferase DA442_RS16705 PF00440 Bacterial regulatory proteins, tetR family DA442_RS16710 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DA442_RS16710 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_RS16715 PF01554 MatE DA442_RS16720 PF04072 Leucine carboxyl methyltransferase DA442_RS16725 PF01726 LexA DNA binding domain DA442_RS16725 PF00717 Peptidase S24-like DA442_RS16735 PF01553 Acyltransferase DA442_RS16740 PF01040 UbiA prenyltransferase family DA442_RS16745 PF04345 Chorismate lyase DA442_RS16750 PF03748 Flagellar basal body-associated protein FliL DA442_RS16755 PF01694 Rhomboid family DA442_RS16755 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease DA442_RS16760 PF00581 Rhodanese-like domain DA442_RS16770 PF04542 Sigma-70 region 2 DA442_RS16770 PF04545 Sigma-70, region 4 DA442_RS16770 PF00140 Sigma-70 factor, region 1.2 DA442_RS16775 PF18075 FtsX extracellular domain DA442_RS16780 PF00005 ABC transporter DA442_RS16785 PF00448 SRP54-type protein, GTPase domain DA442_RS16785 PF02881 SRP54-type protein, helical bundle domain DA442_RS16800 PF01914 MarC family integral membrane protein DA442_RS16855 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DA442_RS16855 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DA442_RS16860 PF01022 Bacterial regulatory protein, arsR family DA442_RS16865 PF08668 HDOD domain DA442_RS16865 PF00563 EAL domain DA442_RS16870 PF01810 LysE type translocator DA442_RS16875 PF12146 Serine aminopeptidase, S33 DA442_RS16900 PF03942 DTW domain DA442_RS16905 PF10442 FIST C domain DA442_RS16905 PF08495 FIST N domain DA442_RS16905 PF00563 EAL domain DA442_RS16905 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS16910 PF13419 Haloacid dehalogenase-like hydrolase DA442_RS16915 PF00589 Phage integrase family DA442_RS16915 PF02899 Phage integrase, N-terminal SAM-like domain DA442_RS16925 PF01678 Diaminopimelate epimerase DA442_RS16930 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DA442_RS16930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DA442_RS16940 PF01491 Frataxin-like domain DA442_RS16945 PF01295 Adenylate cyclase, class-I DA442_RS16945 PF12633 Adenylate cyclase NT domain DA442_RS16950 PF03900 Porphobilinogen deaminase, C-terminal domain DA442_RS16950 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DA442_RS16955 PF02602 Uroporphyrinogen-III synthase HemD DA442_RS16960 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase DA442_RS16965 PF07219 HemY protein N-terminus DA442_RS17015 PF00175 Oxidoreductase NAD-binding domain DA442_RS17020 PF00111 2Fe-2S iron-sulfur cluster binding domain DA442_RS17025 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DA442_RS17040 PF07497 Rho termination factor, RNA-binding domain DA442_RS17040 PF07498 Rho termination factor, N-terminal domain DA442_RS17040 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA442_RS17045 PF00085 Thioredoxin DA442_RS17050 PF00271 Helicase conserved C-terminal domain DA442_RS17050 PF00270 DEAD/DEAH box helicase DA442_RS17055 PF02541 Ppx/GppA phosphatase family DA442_RS17060 PF02592 Putative vitamin uptake transporter DA442_RS17075 PF00271 Helicase conserved C-terminal domain DA442_RS17075 PF00270 DEAD/DEAH box helicase DA442_RS17075 PF00570 HRDC domain DA442_RS17075 PF16124 RecQ zinc-binding DA442_RS17075 PF09382 RQC domain DA442_RS17080 PF00892 EamA-like transporter family DA442_RS17090 PF01810 LysE type translocator DA442_RS17105 PF13361 UvrD-like helicase C-terminal domain DA442_RS17105 PF00580 UvrD/REP helicase N-terminal domain DA442_RS17115 PF05114 Protein of unknown function (DUF692) DA442_RS17135 PF07690 Major Facilitator Superfamily DA442_RS17140 PF03466 LysR substrate binding domain DA442_RS17140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS17145 PF00557 Metallopeptidase family M24 DA442_RS17145 PF01321 Creatinase/Prolidase N-terminal domain DA442_RS17145 PF01321 Creatinase/Prolidase N-terminal domain DA442_RS17145 PF00557 Metallopeptidase family M24 DA442_RS17150 PF06968 Biotin and Thiamin Synthesis associated domain DA442_RS17150 PF04055 Radical SAM superfamily DA442_RS17155 PF05690 Thiazole biosynthesis protein ThiG DA442_RS17160 PF02597 ThiS family DA442_RS17165 PF00899 ThiF family DA442_RS17170 PF02581 Thiamine monophosphate synthase DA442_RS17175 PF01964 Radical SAM ThiC family DA442_RS17175 PF13667 ThiC-associated domain DA442_RS17180 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DA442_RS17235 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_RS17240 PF07369 Protein of unknown function (DUF1488) DA442_RS17245 PF08501 Shikimate dehydrogenase substrate binding domain DA442_RS17245 PF01488 Shikimate / quinate 5-dehydrogenase DA442_RS17245 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DA442_RS17250 PF01218 Coproporphyrinogen III oxidase DA442_RS17255 PF01300 Telomere recombination DA442_RS17260 PF00731 AIR carboxylase DA442_RS17265 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DA442_RS17265 PF02222 ATP-grasp domain DA442_RS17270 PF01396 Topoisomerase DNA binding C4 zinc finger DA442_RS17275 PF04361 Protein of unknown function (DUF494) DA442_RS17280 PF02481 DNA recombination-mediator protein A DA442_RS17280 PF17782 DprA winged helix domain DA442_RS17290 PF01327 Polypeptide deformylase DA442_RS17295 PF02911 Formyl transferase, C-terminal domain DA442_RS17295 PF00551 Formyl transferase DA442_RS17300 PF01029 NusB family DA442_RS17300 PF01189 16S rRNA methyltransferase RsmB/F DA442_RS17305 PF02080 TrkA-C domain DA442_RS17305 PF02254 TrkA-N domain DA442_RS17310 PF02386 Cation transport protein DA442_RS17320 PF03006 Haemolysin-III related DA442_RS17325 PF07070 SpoOM protein DA442_RS17335 PF06288 Protein of unknown function (DUF1040) DA442_RS17340 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase DA442_RS17340 PF13746 4Fe-4S dicluster domain DA442_RS17340 PF12801 4Fe-4S binding domain DA442_RS17345 PF01636 Phosphotransferase enzyme family DA442_RS17350 PF01323 DSBA-like thioredoxin domain DA442_RS17355 PF01553 Acyltransferase DA442_RS17365 PF13335 Magnesium chelatase, subunit ChlI C-terminal DA442_RS17365 PF01078 Magnesium chelatase, subunit ChlI DA442_RS17370 PF00205 Thiamine pyrophosphate enzyme, central domain DA442_RS17370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA442_RS17370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DA442_RS17380 PF01063 Amino-transferase class IV DA442_RS17385 PF00920 Dehydratase family DA442_RS17390 PF00585 C-terminal regulatory domain of Threonine dehydratase DA442_RS17390 PF00291 Pyridoxal-phosphate dependent enzyme DA442_RS17395 PF03466 LysR substrate binding domain DA442_RS17395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS17400 PF07690 Major Facilitator Superfamily DA442_RS17410 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS17415 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_RS17415 PF12804 MobA-like NTP transferase domain DA442_RS17420 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DA442_RS17420 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DA442_RS17425 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA442_RS17425 PF02874 ATP synthase alpha/beta family, beta-barrel domain DA442_RS17430 PF00231 ATP synthase DA442_RS17435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA442_RS17435 PF02874 ATP synthase alpha/beta family, beta-barrel domain DA442_RS17435 PF00306 ATP synthase alpha/beta chain, C terminal domain DA442_RS17440 PF00213 ATP synthase delta (OSCP) subunit DA442_RS17445 PF00430 ATP synthase B/B' CF(0) DA442_RS17450 PF00137 ATP synthase subunit C DA442_RS17455 PF00119 ATP synthase A chain DA442_RS17460 PF03899 ATP synthase I chain DA442_RS17465 PF02195 ParB-like nuclease domain DA442_RS17465 PF17762 HTH domain found in ParB protein DA442_RS17470 PF13614 AAA domain DA442_RS17475 PF02527 rRNA small subunit methyltransferase G DA442_RS17480 PF13932 GidA associated domain DA442_RS17480 PF01134 Glucose inhibited division protein A DA442_RS17485 PF00258 Flavodoxin DA442_RS17530 PF02384 N-6 DNA Methylase DA442_RS17535 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DA442_RS17535 PF11867 Domain of unknown function (DUF3387) DA442_RS17535 PF18766 SWI2/SNF2 ATPase DA442_RS17560 PF00589 Phage integrase family DA442_RS17560 PF02899 Phage integrase, N-terminal SAM-like domain DA442_RS17565 PF12631 MnmE helical domain DA442_RS17565 PF10396 GTP-binding protein TrmE N-terminus DA442_RS17565 PF01926 50S ribosome-binding GTPase DA442_RS17570 PF02096 60Kd inner membrane protein DA442_RS17570 PF14849 YidC periplasmic domain DA442_RS17575 PF01809 Putative membrane protein insertion efficiency factor DA442_RS17580 PF00825 Ribonuclease P DA442_RS17585 PF00468 Ribosomal protein L34 DA442_RS17590 PF00005 ABC transporter DA442_RS17595 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS17600 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_RS17625 PF00313 'Cold-shock' DNA-binding domain DA442_RS17630 PF03889 Alternative ribosome-rescue factor A DA442_RS17645 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS17660 PF12704 MacB-like periplasmic core domain DA442_RS17660 PF02687 FtsX-like permease family DA442_RS17665 PF12704 MacB-like periplasmic core domain DA442_RS17665 PF02687 FtsX-like permease family DA442_RS17665 PF00005 ABC transporter DA442_RS17675 PF00672 HAMP domain DA442_RS17675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS17675 PF17200 Single Cache domain 2 DA442_RS17680 PF00210 Ferritin-like domain DA442_RS17690 PF07995 Glucose / Sorbosone dehydrogenase DA442_RS17695 PF00465 Iron-containing alcohol dehydrogenase DA442_RS17710 PF00892 EamA-like transporter family DA442_RS17725 PF03466 LysR substrate binding domain DA442_RS17725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS17735 PF00501 AMP-binding enzyme DA442_RS17735 PF13193 AMP-binding enzyme C-terminal domain DA442_RS17740 PF00351 Biopterin-dependent aromatic amino acid hydroxylase DA442_RS17745 PF01329 Pterin 4 alpha carbinolamine dehydratase DA442_RS17770 PF12843 Putative quorum-sensing-regulated virulence factor DA442_RS17775 PF00270 DEAD/DEAH box helicase DA442_RS17775 PF00271 Helicase conserved C-terminal domain DA442_RS17780 PF09905 DNA-binding protein VF530 DA442_RS17785 PF00291 Pyridoxal-phosphate dependent enzyme DA442_RS17795 PF01470 Pyroglutamyl peptidase DA442_RS17805 PF02492 CobW/HypB/UreG, nucleotide-binding domain DA442_RS17805 PF07683 Cobalamin synthesis protein cobW C-terminal domain DA442_RS17810 PF00271 Helicase conserved C-terminal domain DA442_RS17810 PF00270 DEAD/DEAH box helicase DA442_RS17830 PF12792 CSS motif domain associated with EAL DA442_RS17830 PF00563 EAL domain DA442_RS17835 PF00005 ABC transporter DA442_RS17840 PF00672 HAMP domain DA442_RS17840 PF12729 Four helix bundle sensory module for signal transduction DA442_RS17840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS17855 PF01575 MaoC like domain DA442_RS17860 PF12849 PBP superfamily domain DA442_RS17870 PF12833 Helix-turn-helix domain DA442_RS17875 PF00575 S1 RNA binding domain DA442_RS17875 PF00773 RNB domain DA442_RS17875 PF08206 Ribonuclease B OB domain DA442_RS17880 PF00270 DEAD/DEAH box helicase DA442_RS17880 PF00271 Helicase conserved C-terminal domain DA442_RS17880 PF03880 DbpA RNA binding domain DA442_RS17885 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS17885 PF00563 EAL domain DA442_RS17885 PF13426 PAS domain DA442_RS17895 PF00871 Acetokinase family DA442_RS17915 PF00682 HMGL-like DA442_RS17920 PF00378 Enoyl-CoA hydratase/isomerase DA442_RS17925 PF01039 Carboxyl transferase domain DA442_RS17930 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DA442_RS17930 PF02770 Acyl-CoA dehydrogenase, middle domain DA442_RS17930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DA442_RS17935 PF09278 MerR, DNA binding DA442_RS17935 PF00376 MerR family regulatory protein DA442_RS17940 PF02803 Thiolase, C-terminal domain DA442_RS17940 PF00108 Thiolase, N-terminal domain DA442_RS17945 PF00171 Aldehyde dehydrogenase family DA442_RS17950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DA442_RS17950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DA442_RS17950 PF02770 Acyl-CoA dehydrogenase, middle domain DA442_RS17955 PF00378 Enoyl-CoA hydratase/isomerase DA442_RS17960 PF00378 Enoyl-CoA hydratase/isomerase DA442_RS17965 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DA442_RS17965 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DA442_RS17975 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DA442_RS17975 PF06481 COX Aromatic Rich Motif DA442_RS17980 PF00115 Cytochrome C and Quinol oxidase polypeptide I DA442_RS17985 PF00510 Cytochrome c oxidase subunit III DA442_RS17995 PF01040 UbiA prenyltransferase family DA442_RS18000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DA442_RS18005 PF01565 FAD binding domain DA442_RS18005 PF08031 Berberine and berberine like DA442_RS18010 PF03466 LysR substrate binding domain DA442_RS18010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS18025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS18025 PF03466 LysR substrate binding domain DA442_RS18030 PF00005 ABC transporter DA442_RS18035 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_RS18040 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS18045 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS18055 PF03466 LysR substrate binding domain DA442_RS18055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS18060 PF00043 Glutathione S-transferase, C-terminal domain DA442_RS18060 PF13417 Glutathione S-transferase, N-terminal domain DA442_RS18070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DA442_RS18070 PF00364 Biotin-requiring enzyme DA442_RS18070 PF02817 e3 binding domain DA442_RS18075 PF02780 Transketolase, C-terminal domain DA442_RS18075 PF02779 Transketolase, pyrimidine binding domain DA442_RS18080 PF00676 Dehydrogenase E1 component DA442_RS18095 PF00012 Hsp70 protein DA442_RS18100 PF04314 Copper chaperone PCu(A)C DA442_RS18125 PF01497 Periplasmic binding protein DA442_RS18130 PF01032 FecCD transport family DA442_RS18135 PF01032 FecCD transport family DA442_RS18140 PF00005 ABC transporter DA442_RS18145 PF13411 MerR HTH family regulatory protein DA442_RS18160 PF07715 TonB-dependent Receptor Plug Domain DA442_RS18160 PF00593 TonB dependent receptor DA442_RS18195 PF12805 FUSC-like inner membrane protein yccS DA442_RS18200 PF13361 UvrD-like helicase C-terminal domain DA442_RS18200 PF00580 UvrD/REP helicase N-terminal domain DA442_RS18200 PF12462 DNA helicase IV / RNA helicase N terminal DA442_RS18205 PF02142 MGS-like domain DA442_RS18210 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA442_RS18230 PF00486 Transcriptional regulatory protein, C terminal DA442_RS18230 PF00072 Response regulator receiver domain DA442_RS18235 PF00884 Sulfatase DA442_RS18235 PF16385 Domain of unknown function DA442_RS18240 PF00884 Sulfatase DA442_RS18250 PF03466 LysR substrate binding domain DA442_RS18250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS18255 PF00884 Sulfatase DA442_RS18260 PF04055 Radical SAM superfamily DA442_RS18260 PF13186 Iron-sulfur cluster-binding domain DA442_RS18265 PF07726 ATPase family associated with various cellular activities (AAA) DA442_RS18265 PF17863 AAA lid domain DA442_RS18280 PF00092 von Willebrand factor type A domain DA442_RS18295 PF01872 RibD C-terminal domain DA442_RS18295 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DA442_RS18300 PF03466 LysR substrate binding domain DA442_RS18300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS18305 PF00781 Diacylglycerol kinase catalytic domain DA442_RS18310 PF04076 Bacterial OB fold (BOF) protein DA442_RS18330 PF04055 Radical SAM superfamily DA442_RS18330 PF13186 Iron-sulfur cluster-binding domain DA442_RS18340 PF18081 Fanconi anemia-associated nuclease SAP domain DA442_RS18340 PF08774 VRR-NUC domain DA442_RS18360 PF01435 Peptidase family M48 DA442_RS18365 PF04011 LemA family DA442_RS18370 PF03606 C4-dicarboxylate anaerobic carrier DA442_RS18390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS18390 PF00072 Response regulator receiver domain DA442_RS18395 PF00155 Aminotransferase class I and II DA442_RS18400 PF01926 50S ribosome-binding GTPase DA442_RS18410 PF04151 Bacterial pre-peptidase C-terminal domain DA442_RS18410 PF01752 Collagenase DA442_RS18410 PF08453 Peptidase family M9 N-terminal DA442_RS18420 PF12833 Helix-turn-helix domain DA442_RS18425 PF03466 LysR substrate binding domain DA442_RS18425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS18445 PF13629 Pilus formation protein N terminal region DA442_RS18445 PF00263 Bacterial type II and III secretion system protein DA442_RS18445 PF04972 BON domain DA442_RS18460 PF00437 Type II/IV secretion system protein DA442_RS18495 PF05736 OprF membrane domain DA442_RS18495 PF00691 OmpA family DA442_RS18505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS18505 PF03466 LysR substrate binding domain DA442_RS18510 PF03466 LysR substrate binding domain DA442_RS18510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS18520 PF00072 Response regulator receiver domain DA442_RS18520 PF09456 RcsC Alpha-Beta-Loop (ABL) DA442_RS18520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS18520 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS18525 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS18525 PF13188 PAS domain DA442_RS18525 PF03707 Bacterial signalling protein N terminal repeat DA442_RS18525 PF00563 EAL domain DA442_RS18530 PF00196 Bacterial regulatory proteins, luxR family DA442_RS18530 PF00072 Response regulator receiver domain DA442_RS18535 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS18545 PF00072 Response regulator receiver domain DA442_RS18545 PF00196 Bacterial regulatory proteins, luxR family DA442_RS18570 PF00072 Response regulator receiver domain DA442_RS18570 PF01584 CheW-like domain DA442_RS18590 PF00892 EamA-like transporter family DA442_RS18605 PF01569 PAP2 superfamily DA442_RS18615 PF04151 Bacterial pre-peptidase C-terminal domain DA442_RS18615 PF07504 Fungalysin/Thermolysin Propeptide Motif DA442_RS18615 PF03413 Peptidase propeptide and YPEB domain DA442_RS18615 PF01447 Thermolysin metallopeptidase, catalytic domain DA442_RS18615 PF02868 Thermolysin metallopeptidase, alpha-helical domain DA442_RS18620 PF00893 Small Multidrug Resistance protein DA442_RS18625 PF00892 EamA-like transporter family DA442_RS18645 PF00171 Aldehyde dehydrogenase family DA442_RS18650 PF00939 Sodium:sulfate symporter transmembrane region DA442_RS18655 PF17203 Single cache domain 3 DA442_RS18655 PF00989 PAS fold DA442_RS18655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS18655 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DA442_RS18660 PF12431 Transcriptional regulator DA442_RS18660 PF00072 Response regulator receiver domain DA442_RS18680 PF00141 Peroxidase DA442_RS18685 PF09722 Protein of unknown function (DUF2384) DA442_RS18695 PF01757 Acyltransferase family DA442_RS18710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_RS18730 PF03448 MgtE intracellular N domain DA442_RS18730 PF00571 CBS domain DA442_RS18730 PF01769 Divalent cation transporter DA442_RS18760 PF01327 Polypeptide deformylase DA442_RS18780 PF02253 Phospholipase A1 DA442_RS18800 PF00005 ABC transporter DA442_RS18800 PF00664 ABC transporter transmembrane region DA442_RS18805 PF02811 PHP domain DA442_RS18805 PF00929 Exonuclease DA442_RS18805 PF11490 DNA polymerase III polC-type N-terminus II DA442_RS18805 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DA442_RS18805 PF07733 Bacterial DNA polymerase III alpha NTPase domain DA442_RS18805 PF14579 Helix-hairpin-helix motif DA442_RS18810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS18810 PF03466 LysR substrate binding domain DA442_RS18815 PF17848 Acetyl-coA carboxylase zinc finger domain DA442_RS18815 PF01039 Carboxyl transferase domain DA442_RS18820 PF01212 Beta-eliminating lyase DA442_RS18845 PF02347 Glycine cleavage system P-protein DA442_RS18850 PF01597 Glycine cleavage H-protein DA442_RS18855 PF00464 Serine hydroxymethyltransferase DA442_RS18865 PF08669 Glycine cleavage T-protein C-terminal barrel domain DA442_RS18865 PF01571 Aminomethyltransferase folate-binding domain DA442_RS18885 PF00873 AcrB/AcrD/AcrF family DA442_RS18895 PF02378 Phosphotransferase system, EIIC DA442_RS18895 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA442_RS18900 PF00294 pfkB family carbohydrate kinase DA442_RS18905 PF00381 PTS HPr component phosphorylation site DA442_RS18905 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA442_RS18910 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA442_RS18910 PF00356 Bacterial regulatory proteins, lacI family DA442_RS18930 PF00989 PAS fold DA442_RS18930 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS18930 PF01590 GAF domain DA442_RS18930 PF00563 EAL domain DA442_RS18935 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS18940 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_RS18945 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS18950 PF00005 ABC transporter DA442_RS18960 PF07690 Major Facilitator Superfamily DA442_RS18970 PF00672 HAMP domain DA442_RS18970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS18970 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS18975 PF14532 Sigma-54 interaction domain DA442_RS18975 PF02954 Bacterial regulatory protein, Fis family DA442_RS18975 PF00072 Response regulator receiver domain DA442_RS18985 PF00465 Iron-containing alcohol dehydrogenase DA442_RS19000 PF00704 Glycosyl hydrolases family 18 DA442_RS19000 PF06483 Chitinase C DA442_RS19005 PF00483 Nucleotidyl transferase DA442_RS19010 PF01268 Formate--tetrahydrofolate ligase DA442_RS19015 PF00294 pfkB family carbohydrate kinase DA442_RS19045 PF13419 Haloacid dehalogenase-like hydrolase DA442_RS19055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS19065 PF04336 Acyl carrier protein phosphodiesterase DA442_RS19070 PF00270 DEAD/DEAH box helicase DA442_RS19070 PF00271 Helicase conserved C-terminal domain DA442_RS19075 PF12792 CSS motif domain associated with EAL DA442_RS19075 PF00563 EAL domain DA442_RS19090 PF01292 Prokaryotic cytochrome b561 DA442_RS19095 PF04264 YceI-like domain DA442_RS19100 PF01226 Formate/nitrite transporter DA442_RS19105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS19105 PF03466 LysR substrate binding domain DA442_RS19110 PF06496 Protein of unknown function (DUF1097) DA442_RS19115 PF11398 Protein of unknown function (DUF2813) DA442_RS19120 PF00149 Calcineurin-like phosphoesterase DA442_RS19120 PF02872 5'-nucleotidase, C-terminal domain DA442_RS19125 PF03741 Integral membrane protein TerC family DA442_RS19145 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DA442_RS19160 PF03061 Thioesterase superfamily DA442_RS19170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_RS19170 PF12793 Sugar transport-related sRNA regulator N-term DA442_RS19195 PF00684 DnaJ central domain DA442_RS19195 PF01556 DnaJ C terminal domain DA442_RS19195 PF00226 DnaJ domain DA442_RS19205 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS19205 PF03707 Bacterial signalling protein N terminal repeat DA442_RS19205 PF13188 PAS domain DA442_RS19205 PF00563 EAL domain DA442_RS19210 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DA442_RS19210 PF12241 Trans-2-enoyl-CoA reductase catalytic region DA442_RS19210 PF07055 Enoyl reductase FAD binding domain DA442_RS19215 PF13472 GDSL-like Lipase/Acylhydrolase family DA442_RS19220 PF00005 ABC transporter DA442_RS19235 PF02626 Carboxyltransferase domain, subdomain A and B DA442_RS19240 PF02682 Carboxyltransferase domain, subdomain C and D DA442_RS19245 PF03746 LamB/YcsF family DA442_RS19250 PF08447 PAS fold DA442_RS19250 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS19250 PF08448 PAS fold DA442_RS19250 PF05231 MASE1 DA442_RS19250 PF00563 EAL domain DA442_RS19250 PF13426 PAS domain DA442_RS19255 PF16363 GDP-mannose 4,6 dehydratase DA442_RS19265 PF00593 TonB dependent receptor DA442_RS19265 PF07715 TonB-dependent Receptor Plug Domain DA442_RS19270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS19270 PF03466 LysR substrate binding domain DA442_RS19275 PF00583 Acetyltransferase (GNAT) family DA442_RS19275 PF13380 CoA binding domain DA442_RS19275 PF13607 Succinyl-CoA ligase like flavodoxin domain DA442_RS19285 PF01820 D-ala D-ala ligase N-terminus DA442_RS19285 PF07478 D-ala D-ala ligase C-terminus DA442_RS19295 PF01253 Translation initiation factor SUI1 DA442_RS19345 PF05707 Zonular occludens toxin (Zot) DA442_RS19385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS19385 PF03466 LysR substrate binding domain DA442_RS19400 PF03701 Uncharacterised protein family (UPF0181) DA442_RS19425 PF02233 NAD(P) transhydrogenase beta subunit DA442_RS19445 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS19455 PF01590 GAF domain DA442_RS19455 PF00360 Phytochrome region DA442_RS19455 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS19455 PF00563 EAL domain DA442_RS19465 PF00005 ABC transporter DA442_RS19465 PF03459 TOBE domain DA442_RS19470 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS19480 PF07685 CobB/CobQ-like glutamine amidotransferase domain DA442_RS19485 PF04076 Bacterial OB fold (BOF) protein DA442_RS19495 PF08443 RimK-like ATP-grasp domain DA442_RS19495 PF18030 RimK PreATP-grasp domain DA442_RS19500 PF00155 Aminotransferase class I and II DA442_RS19505 PF12833 Helix-turn-helix domain DA442_RS19515 PF01554 MatE DA442_RS19525 PF13597 Anaerobic ribonucleoside-triphosphate reductase DA442_RS19525 PF03477 ATP cone domain DA442_RS19535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA442_RS19540 PF00873 AcrB/AcrD/AcrF family DA442_RS19550 PF04143 Sulphur transport DA442_RS19565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DA442_RS19565 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_RS19570 PF00384 Molybdopterin oxidoreductase DA442_RS19580 PF03466 LysR substrate binding domain DA442_RS19580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS19585 PF02634 FdhD/NarQ family DA442_RS19590 PF07690 Major Facilitator Superfamily DA442_RS19595 PF00072 Response regulator receiver domain DA442_RS19595 PF00196 Bacterial regulatory proteins, luxR family DA442_RS19600 PF07730 Histidine kinase DA442_RS19600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS19600 PF05231 MASE1 DA442_RS19605 PF07690 Major Facilitator Superfamily DA442_RS19610 PF01238 Phosphomannose isomerase type I DA442_RS19630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DA442_RS19630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DA442_RS19635 PF00085 Thioredoxin DA442_RS19640 PF07690 Major Facilitator Superfamily DA442_RS19645 PF12833 Helix-turn-helix domain DA442_RS19645 PF00072 Response regulator receiver domain DA442_RS19645 PF07495 Y_Y_Y domain DA442_RS19645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS19645 PF07494 Two component regulator propeller DA442_RS19645 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS19650 PF01554 MatE DA442_RS19655 PF11756 Nitrous oxide-stimulated promoter DA442_RS19670 PF07715 TonB-dependent Receptor Plug Domain DA442_RS19670 PF00593 TonB dependent receptor DA442_RS19685 PF03605 Anaerobic c4-dicarboxylate membrane transporter DA442_RS19700 PF14824 Sirohaem biosynthesis protein central DA442_RS19700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA442_RS19700 PF10414 Sirohaem synthase dimerisation region DA442_RS19705 PF01226 Formate/nitrite transporter DA442_RS19710 PF13806 Rieske-like [2Fe-2S] domain DA442_RS19715 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DA442_RS19715 PF18267 Rubredoxin NAD+ reductase C-terminal domain DA442_RS19715 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_RS19715 PF04324 BFD-like [2Fe-2S] binding domain DA442_RS19715 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DA442_RS19765 PF13462 Thioredoxin DA442_RS19765 PF06965 Na+/H+ antiporter 1 DA442_RS19785 PF09154 Domain of unknown function (DUF1939) DA442_RS19785 PF00128 Alpha amylase, catalytic domain DA442_RS19800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS19800 PF00672 HAMP domain DA442_RS19805 PF00842 Alanine racemase, C-terminal domain DA442_RS19805 PF01168 Alanine racemase, N-terminal domain DA442_RS19825 PF01565 FAD binding domain DA442_RS19825 PF09330 D-lactate dehydrogenase, membrane binding DA442_RS19830 PF03466 LysR substrate binding domain DA442_RS19830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS19850 PF05762 VWA domain containing CoxE-like protein DA442_RS19855 PF17868 AAA lid domain DA442_RS19855 PF07728 AAA domain (dynein-related subfamily) DA442_RS19855 PF12592 Protein of unknown function (DUF3763) DA442_RS19865 PF01212 Beta-eliminating lyase DA442_RS19870 PF00034 Cytochrome c DA442_RS19880 PF03606 C4-dicarboxylate anaerobic carrier DA442_RS19890 PF07690 Major Facilitator Superfamily DA442_RS19900 PF08212 Lipocalin-like domain DA442_RS19925 PF12320 Type 5 capsule protein repressor C-terminal domain DA442_RS19925 PF00149 Calcineurin-like phosphoesterase DA442_RS19940 PF06715 Gp5 C-terminal repeat (3 copies) DA442_RS19940 PF04717 Type VI secretion system, phage-baseplate injector DA442_RS19950 PF10431 C-terminal, D2-small domain, of ClpB protein DA442_RS19950 PF00004 ATPase family associated with various cellular activities (AAA) DA442_RS19950 PF17871 AAA lid domain DA442_RS19950 PF07724 AAA domain (Cdc48 subfamily) DA442_RS19960 PF05947 Type VI secretion system, TssF DA442_RS19975 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath DA442_RS19980 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath DA442_RS19985 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 DA442_RS20005 PF06744 Type VI secretion protein IcmF C-terminal DA442_RS20005 PF14331 ImcF-related N-terminal domain DA442_RS20005 PF06761 Intracellular multiplication and human macrophage-killing DA442_RS20010 PF00691 OmpA family DA442_RS20010 PF13677 Membrane MotB of proton-channel complex MotA/MotB DA442_RS20015 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DA442_RS20030 PF03793 PASTA domain DA442_RS20030 PF00069 Protein kinase domain DA442_RS20055 PF00211 Adenylate and Guanylate cyclase catalytic domain DA442_RS20055 PF00072 Response regulator receiver domain DA442_RS20070 PF08361 MAATS-type transcriptional repressor, C-terminal region DA442_RS20070 PF00440 Bacterial regulatory proteins, tetR family DA442_RS20090 PF00005 ABC transporter DA442_RS20110 PF08376 Nitrate and nitrite sensing DA442_RS20110 PF03861 ANTAR domain DA442_RS20115 PF01738 Dienelactone hydrolase family DA442_RS20125 PF02885 Glycosyl transferase family, helical bundle domain DA442_RS20125 PF00591 Glycosyl transferase family, a/b domain DA442_RS20130 PF14824 Sirohaem biosynthesis protein central DA442_RS20130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DA442_RS20130 PF10414 Sirohaem synthase dimerisation region DA442_RS20135 PF00384 Molybdopterin oxidoreductase DA442_RS20135 PF01568 Molydopterin dinucleotide binding domain DA442_RS20135 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA442_RS20145 PF03222 Tryptophan/tyrosine permease family DA442_RS20155 PF00072 Response regulator receiver domain DA442_RS20155 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS20165 PF00082 Subtilase family DA442_RS20165 PF01483 Proprotein convertase P-domain DA442_RS20190 PF00486 Transcriptional regulatory protein, C terminal DA442_RS20190 PF00072 Response regulator receiver domain DA442_RS20210 PF01048 Phosphorylase superfamily DA442_RS20225 PF00356 Bacterial regulatory proteins, lacI family DA442_RS20230 PF00294 pfkB family carbohydrate kinase DA442_RS20235 PF13407 Periplasmic binding protein domain DA442_RS20245 PF00005 ABC transporter DA442_RS20250 PF05025 RbsD / FucU transport protein family DA442_RS20255 PF00563 EAL domain DA442_RS20255 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS20260 PF01048 Phosphorylase superfamily DA442_RS20305 PF04116 Fatty acid hydroxylase superfamily DA442_RS20320 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS20320 PF00072 Response regulator receiver domain DA442_RS20320 PF09308 LuxQ, periplasmic DA442_RS20320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS20325 PF00034 Cytochrome c DA442_RS20325 PF03150 Di-haem cytochrome c peroxidase DA442_RS20340 PF00563 EAL domain DA442_RS20340 PF03707 Bacterial signalling protein N terminal repeat DA442_RS20340 PF13188 PAS domain DA442_RS20340 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS20355 PF01145 SPFH domain / Band 7 family DA442_RS20355 PF16200 C-terminal region of band_7 DA442_RS20365 PF00881 Nitroreductase family DA442_RS20370 PF00005 ABC transporter DA442_RS20370 PF00571 CBS domain DA442_RS20375 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS20380 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DA442_RS20385 PF00732 GMC oxidoreductase DA442_RS20385 PF05199 GMC oxidoreductase DA442_RS20390 PF00171 Aldehyde dehydrogenase family DA442_RS20395 PF13977 BetI-type transcriptional repressor, C-terminal DA442_RS20395 PF00440 Bacterial regulatory proteins, tetR family DA442_RS20400 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS20400 PF17151 Periplasmic sensor domain DA442_RS20415 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DA442_RS20415 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DA442_RS20425 PF00378 Enoyl-CoA hydratase/isomerase DA442_RS20430 PF02770 Acyl-CoA dehydrogenase, middle domain DA442_RS20430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DA442_RS20430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DA442_RS20435 PF00171 Aldehyde dehydrogenase family DA442_RS20440 PF00108 Thiolase, N-terminal domain DA442_RS20440 PF02803 Thiolase, C-terminal domain DA442_RS20445 PF09278 MerR, DNA binding DA442_RS20445 PF00376 MerR family regulatory protein DA442_RS20450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DA442_RS20450 PF02770 Acyl-CoA dehydrogenase, middle domain DA442_RS20450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DA442_RS20460 PF00378 Enoyl-CoA hydratase/isomerase DA442_RS20465 PF00289 Biotin carboxylase, N-terminal domain DA442_RS20465 PF02785 Biotin carboxylase C-terminal domain DA442_RS20465 PF00364 Biotin-requiring enzyme DA442_RS20465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DA442_RS20465 PF18140 Propionyl-coenzyme A carboxylase BT domain DA442_RS20470 PF00682 HMGL-like DA442_RS20475 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS20475 PF01627 Hpt domain DA442_RS20475 PF00072 Response regulator receiver domain DA442_RS20475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DA442_RS20475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS20475 PF00672 HAMP domain DA442_RS20490 PF12795 Mechanosensitive ion channel porin domain DA442_RS20490 PF12794 Mechanosensitive ion channel inner membrane domain 1 DA442_RS20490 PF00924 Mechanosensitive ion channel DA442_RS20500 PF12464 Maltose acetyltransferase DA442_RS20500 PF14602 Hexapeptide repeat of succinyl-transferase DA442_RS20505 PF00155 Aminotransferase class I and II DA442_RS20505 PF00392 Bacterial regulatory proteins, gntR family DA442_RS20510 PF01654 Cytochrome bd terminal oxidase subunit I DA442_RS20515 PF02322 Cytochrome bd terminal oxidase subunit II DA442_RS20525 PF02567 Phenazine biosynthesis-like protein DA442_RS20530 PF02627 Carboxymuconolactone decarboxylase family DA442_RS20535 PF13411 MerR HTH family regulatory protein DA442_RS20545 PF00034 Cytochrome c DA442_RS20550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DA442_RS20555 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DA442_RS20555 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DA442_RS20555 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DA442_RS20560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS20560 PF03466 LysR substrate binding domain DA442_RS20565 PF05724 Thiopurine S-methyltransferase (TPMT) DA442_RS20570 PF00501 AMP-binding enzyme DA442_RS20570 PF14535 AMP-binding enzyme C-terminal domain DA442_RS20575 PF00005 ABC transporter DA442_RS20600 PF00005 ABC transporter DA442_RS20600 PF12399 Branched-chain amino acid ATP-binding cassette transporter DA442_RS20615 PF01012 Electron transfer flavoprotein domain DA442_RS20620 PF01012 Electron transfer flavoprotein domain DA442_RS20620 PF00766 Electron transfer flavoprotein FAD-binding domain DA442_RS20625 PF00501 AMP-binding enzyme DA442_RS20625 PF13193 AMP-binding enzyme C-terminal domain DA442_RS20630 PF00478 IMP dehydrogenase / GMP reductase domain DA442_RS20635 PF03853 YjeF-related protein N-terminus DA442_RS20635 PF01256 Carbohydrate kinase DA442_RS20645 PF00072 Response regulator receiver domain DA442_RS20650 PF00248 Aldo/keto reductase family DA442_RS20665 PF00654 Voltage gated chloride channel DA442_RS20675 PF01566 Natural resistance-associated macrophage protein DA442_RS20680 PF01227 GTP cyclohydrolase I DA442_RS20685 PF00994 Probable molybdopterin binding domain DA442_RS20685 PF03454 MoeA C-terminal region (domain IV) DA442_RS20685 PF03453 MoeA N-terminal region (domain I and II) DA442_RS20690 PF00899 ThiF family DA442_RS20710 PF00581 Rhodanese-like domain DA442_RS20715 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS20715 PF00563 EAL domain DA442_RS20715 PF03707 Bacterial signalling protein N terminal repeat DA442_RS20720 PF00704 Glycosyl hydrolases family 18 DA442_RS20720 PF08329 Chitinase A, N-terminal domain DA442_RS20740 PF00923 Transaldolase/Fructose-6-phosphate aldolase DA442_RS20745 PF00456 Transketolase, thiamine diphosphate binding domain DA442_RS20745 PF02780 Transketolase, C-terminal domain DA442_RS20745 PF02779 Transketolase, pyrimidine binding domain DA442_RS20760 PF07690 Major Facilitator Superfamily DA442_RS20765 PF00793 DAHP synthetase I family DA442_RS20775 PF00691 OmpA family DA442_RS20775 PF01389 OmpA-like transmembrane domain DA442_RS20780 PF13419 Haloacid dehalogenase-like hydrolase DA442_RS20785 PF00472 RF-1 domain DA442_RS20790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS20790 PF00672 HAMP domain DA442_RS20790 PF12729 Four helix bundle sensory module for signal transduction DA442_RS20795 PF00873 AcrB/AcrD/AcrF family DA442_RS20800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA442_RS20805 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DA442_RS20810 PF07687 Peptidase dimerisation domain DA442_RS20810 PF01546 Peptidase family M20/M25/M40 DA442_RS20825 PF00072 Response regulator receiver domain DA442_RS20825 PF00196 Bacterial regulatory proteins, luxR family DA442_RS20830 PF00672 HAMP domain DA442_RS20830 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DA442_RS20830 PF07730 Histidine kinase DA442_RS20830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS20835 PF13187 4Fe-4S dicluster domain DA442_RS20835 PF12838 4Fe-4S dicluster domain DA442_RS20845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA442_RS20845 PF00384 Molybdopterin oxidoreductase DA442_RS20845 PF01568 Molydopterin dinucleotide binding domain DA442_RS20850 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) DA442_RS20855 PF03264 NapC/NirT cytochrome c family, N-terminal region DA442_RS20865 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DA442_RS20875 PF00108 Thiolase, N-terminal domain DA442_RS20875 PF02803 Thiolase, C-terminal domain DA442_RS20880 PF00106 short chain dehydrogenase DA442_RS20895 PF07549 SecD/SecF GG Motif DA442_RS20895 PF02355 Protein export membrane protein DA442_RS20900 PF13721 SecD export protein N-terminal TM region DA442_RS20900 PF07549 SecD/SecF GG Motif DA442_RS20900 PF02355 Protein export membrane protein DA442_RS20930 PF01037 Lrp/AsnC ligand binding domain DA442_RS20950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA442_RS20950 PF00529 HlyD membrane-fusion protein of T1SS DA442_RS20960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS20960 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS20960 PF00072 Response regulator receiver domain DA442_RS20960 PF09308 LuxQ, periplasmic DA442_RS20965 PF13407 Periplasmic binding protein domain DA442_RS20970 PF01541 GIY-YIG catalytic domain DA442_RS20975 PF04337 Protein of unknown function, DUF480 DA442_RS20990 PF04363 Protein of unknown function (DUF496) DA442_RS20995 PF01554 MatE DA442_RS21005 PF01627 Hpt domain DA442_RS21005 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS21005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS21005 PF00672 HAMP domain DA442_RS21005 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DA442_RS21005 PF00072 Response regulator receiver domain DA442_RS21010 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DA442_RS21010 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DA442_RS21030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS21030 PF03466 LysR substrate binding domain DA442_RS21035 PF13404 AsnC-type helix-turn-helix domain DA442_RS21035 PF01037 Lrp/AsnC ligand binding domain DA442_RS21045 PF13520 Amino acid permease DA442_RS21050 PF00392 Bacterial regulatory proteins, gntR family DA442_RS21050 PF00155 Aminotransferase class I and II DA442_RS21060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS21060 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS21060 PF16527 Two-component sensor protein CpxA, periplasmic domain DA442_RS21060 PF00672 HAMP domain DA442_RS21065 PF00486 Transcriptional regulatory protein, C terminal DA442_RS21065 PF00072 Response regulator receiver domain DA442_RS21080 PF12833 Helix-turn-helix domain DA442_RS21080 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DA442_RS21090 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA442_RS21090 PF00529 HlyD membrane-fusion protein of T1SS DA442_RS21095 PF03109 ABC1 family DA442_RS21100 PF01769 Divalent cation transporter DA442_RS21100 PF00571 CBS domain DA442_RS21100 PF03448 MgtE intracellular N domain DA442_RS21110 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DA442_RS21115 PF07969 Amidohydrolase family DA442_RS21125 PF01966 HD domain DA442_RS21140 PF07690 Major Facilitator Superfamily DA442_RS21150 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DA442_RS21155 PF00255 Glutathione peroxidase DA442_RS21170 PF01323 DSBA-like thioredoxin domain DA442_RS21190 PF00106 short chain dehydrogenase DA442_RS21195 PF00072 Response regulator receiver domain DA442_RS21195 PF00486 Transcriptional regulatory protein, C terminal DA442_RS21200 PF00672 HAMP domain DA442_RS21200 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS21200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS21210 PF01219 Prokaryotic diacylglycerol kinase DA442_RS21215 PF08019 Phosphoethanolamine transferase EptA/EptB DA442_RS21215 PF00884 Sulfatase DA442_RS21220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DA442_RS21245 PF01047 MarR family DA442_RS21255 PF01734 Patatin-like phospholipase DA442_RS21260 PF02678 Pirin DA442_RS21260 PF05726 Pirin C-terminal cupin domain DA442_RS21265 PF00313 'Cold-shock' DNA-binding domain DA442_RS21285 PF00962 Adenosine/AMP deaminase DA442_RS21290 PF08534 Redoxin DA442_RS21290 PF00462 Glutaredoxin DA442_RS21310 PF07943 Penicillin-binding protein 5, C-terminal domain DA442_RS21310 PF00768 D-alanyl-D-alanine carboxypeptidase DA442_RS21325 PF02798 Glutathione S-transferase, N-terminal domain DA442_RS21400 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS21405 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS21405 PF14785 Maltose transport system permease protein MalF P2 domain DA442_RS21410 PF01547 Bacterial extracellular solute-binding protein DA442_RS21415 PF08402 TOBE domain DA442_RS21415 PF00005 ABC transporter DA442_RS21420 PF02397 Bacterial sugar transferase DA442_RS21445 PF13439 Glycosyltransferase Family 4 DA442_RS21445 PF00534 Glycosyl transferases group 1 DA442_RS21475 PF04266 ASCH domain DA442_RS21480 PF16925 Tetracyclin repressor-like, C-terminal domain DA442_RS21480 PF00440 Bacterial regulatory proteins, tetR family DA442_RS21485 PF16884 N-terminal domain of oxidoreductase DA442_RS21485 PF00107 Zinc-binding dehydrogenase DA442_RS21490 PF13417 Glutathione S-transferase, N-terminal domain DA442_RS21495 PF06628 Catalase-related immune-responsive DA442_RS21495 PF00199 Catalase DA442_RS21500 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DA442_RS21500 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DA442_RS21510 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA442_RS21520 PF12833 Helix-turn-helix domain DA442_RS21530 PF01238 Phosphomannose isomerase type I DA442_RS21540 PF13419 Haloacid dehalogenase-like hydrolase DA442_RS21545 PF00127 Copper binding proteins, plastocyanin/azurin family DA442_RS21550 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS21550 PF00563 EAL domain DA442_RS21550 PF03707 Bacterial signalling protein N terminal repeat DA442_RS21555 PF02386 Cation transport protein DA442_RS21560 PF02254 TrkA-N domain DA442_RS21560 PF02080 TrkA-C domain DA442_RS21565 PF00072 Response regulator receiver domain DA442_RS21565 PF00486 Transcriptional regulatory protein, C terminal DA442_RS21570 PF13493 Domain of unknown function (DUF4118) DA442_RS21570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS21570 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS21570 PF02702 Osmosensitive K+ channel His kinase sensor domain DA442_RS21575 PF00664 ABC transporter transmembrane region DA442_RS21575 PF00005 ABC transporter DA442_RS21580 PF07715 TonB-dependent Receptor Plug Domain DA442_RS21580 PF00593 TonB dependent receptor DA442_RS21585 PF00005 ABC transporter DA442_RS21595 PF01032 FecCD transport family DA442_RS21605 PF00691 OmpA family DA442_RS21620 PF00529 HlyD membrane-fusion protein of T1SS DA442_RS21625 PF00005 ABC transporter DA442_RS21625 PF00664 ABC transporter transmembrane region DA442_RS21635 PF00196 Bacterial regulatory proteins, luxR family DA442_RS21640 PF00196 Bacterial regulatory proteins, luxR family DA442_RS21650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS21650 PF00672 HAMP domain DA442_RS21650 PF02743 Cache domain DA442_RS21660 PF17863 AAA lid domain DA442_RS21660 PF07726 ATPase family associated with various cellular activities (AAA) DA442_RS21665 PF01882 Protein of unknown function DUF58 DA442_RS21675 PF13519 von Willebrand factor type A domain DA442_RS21695 PF00005 ABC transporter DA442_RS21700 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS21705 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS21710 PF12849 PBP superfamily domain DA442_RS21715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS21715 PF00672 HAMP domain DA442_RS21735 PF00593 TonB dependent receptor DA442_RS21735 PF07715 TonB-dependent Receptor Plug Domain DA442_RS21740 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DA442_RS21740 PF00326 Prolyl oligopeptidase family DA442_RS21745 PF00270 DEAD/DEAH box helicase DA442_RS21745 PF00271 Helicase conserved C-terminal domain DA442_RS21755 PF01476 LysM domain DA442_RS21755 PF17969 L,D-transpeptidase C-terminal domain DA442_RS21755 PF03734 L,D-transpeptidase catalytic domain DA442_RS21760 PF00875 DNA photolyase DA442_RS21760 PF03441 FAD binding domain of DNA photolyase DA442_RS21765 PF13411 MerR HTH family regulatory protein DA442_RS21770 PF08349 Protein of unknown function (DUF1722) DA442_RS21780 PF01048 Phosphorylase superfamily DA442_RS21795 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS21800 PF11742 Protein of unknown function (DUF3302) DA442_RS21805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA442_RS21805 PF00529 HlyD membrane-fusion protein of T1SS DA442_RS21810 PF07155 ECF-type riboflavin transporter, S component DA442_RS21815 PF12558 ATP-binding cassette cobalt transporter DA442_RS21815 PF00005 ABC transporter DA442_RS21830 PF12801 4Fe-4S binding domain DA442_RS21830 PF13237 4Fe-4S dicluster domain DA442_RS21835 PF12838 4Fe-4S dicluster domain DA442_RS21835 PF12800 4Fe-4S binding domain DA442_RS21840 PF00583 Acetyltransferase (GNAT) family DA442_RS21860 PF12945 Flagellar protein YcgR DA442_RS21860 PF07238 PilZ domain DA442_RS21865 PF00672 HAMP domain DA442_RS21865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS21870 PF05362 Lon protease (S16) C-terminal proteolytic domain DA442_RS21870 PF13654 AAA domain DA442_RS21880 PF00005 ABC transporter DA442_RS21880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS21885 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DA442_RS21885 PF00326 Prolyl oligopeptidase family DA442_RS21890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS21890 PF03466 LysR substrate binding domain DA442_RS21895 PF02652 L-lactate permease DA442_RS21900 PF01070 FMN-dependent dehydrogenase DA442_RS21910 PF00924 Mechanosensitive ion channel DA442_RS21915 PF00194 Eukaryotic-type carbonic anhydrase DA442_RS21950 PF00107 Zinc-binding dehydrogenase DA442_RS21950 PF08240 Alcohol dehydrogenase GroES-like domain DA442_RS21955 PF00155 Aminotransferase class I and II DA442_RS21960 PF03707 Bacterial signalling protein N terminal repeat DA442_RS21960 PF00563 EAL domain DA442_RS21960 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS21965 PF00497 Bacterial extracellular solute-binding proteins, family 3 DA442_RS21970 PF00266 Aminotransferase class-V DA442_RS21975 PF00080 Copper/zinc superoxide dismutase (SODC) DA442_RS21980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS21980 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS21980 PF08448 PAS fold DA442_RS21980 PF00072 Response regulator receiver domain DA442_RS21980 PF13426 PAS domain DA442_RS21985 PF00486 Transcriptional regulatory protein, C terminal DA442_RS21985 PF00072 Response regulator receiver domain DA442_RS22015 PF03466 LysR substrate binding domain DA442_RS22015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS22020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_RS22055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS22055 PF03466 LysR substrate binding domain DA442_RS22070 PF18269 T3SS EscN ATPase C-terminal domain DA442_RS22070 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DA442_RS22080 PF14842 FliG N-terminal domain DA442_RS22080 PF14841 FliG middle domain DA442_RS22080 PF01706 FliG C-terminal domain DA442_RS22085 PF01514 Secretory protein of YscJ/FliF family DA442_RS22085 PF08345 Flagellar M-ring protein C-terminal DA442_RS22090 PF02049 Flagellar hook-basal body complex protein FliE DA442_RS22095 PF00158 Sigma-54 interaction domain DA442_RS22095 PF00072 Response regulator receiver domain DA442_RS22095 PF02954 Bacterial regulatory protein, Fis family DA442_RS22110 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DA442_RS22115 PF00813 FliP family DA442_RS22120 PF01313 Bacterial export proteins, family 3 DA442_RS22130 PF01312 FlhB HrpN YscU SpaS Family DA442_RS22135 PF00771 FHIPEP family DA442_RS22145 PF00700 Bacterial flagellin C-terminal helical region DA442_RS22145 PF00669 Bacterial flagellin N-terminal helical region DA442_RS22155 PF07195 Flagellar hook-associated protein 2 C-terminus DA442_RS22155 PF02465 Flagellar hook-associated protein 2 N-terminus DA442_RS22155 PF07196 Flagellin hook IN motif DA442_RS22160 PF02561 Flagellar protein FliS DA442_RS22175 PF03748 Flagellar basal body-associated protein FliL DA442_RS22180 PF04545 Sigma-70, region 4 DA442_RS22180 PF04542 Sigma-70 region 2 DA442_RS22185 PF01618 MotA/TolQ/ExbB proton channel family DA442_RS22200 PF08000 Bacterial PH domain DA442_RS22220 PF02901 Pyruvate formate lyase-like DA442_RS22220 PF01228 Glycine radical DA442_RS22225 PF04055 Radical SAM superfamily DA442_RS22240 PF00583 Acetyltransferase (GNAT) family DA442_RS22250 PF07690 Major Facilitator Superfamily DA442_RS22255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS22255 PF03466 LysR substrate binding domain DA442_RS22260 PF00892 EamA-like transporter family DA442_RS22285 PF13533 Biotin-lipoyl like DA442_RS22295 PF01594 AI-2E family transporter DA442_RS22300 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DA442_RS22310 PF00970 Oxidoreductase FAD-binding domain DA442_RS22310 PF00175 Oxidoreductase NAD-binding domain DA442_RS22320 PF09905 DNA-binding protein VF530 DA442_RS22325 PF03466 LysR substrate binding domain DA442_RS22325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS22335 PF00881 Nitroreductase family DA442_RS22340 PF12833 Helix-turn-helix domain DA442_RS22340 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DA442_RS22345 PF00686 Starch binding domain DA442_RS22345 PF00128 Alpha amylase, catalytic domain DA442_RS22350 PF07943 Penicillin-binding protein 5, C-terminal domain DA442_RS22350 PF00768 D-alanyl-D-alanine carboxypeptidase DA442_RS22355 PF00561 alpha/beta hydrolase fold DA442_RS22365 PF00581 Rhodanese-like domain DA442_RS22365 PF17773 UPF0176 acylphosphatase like domain DA442_RS22370 PF18416 N-acetylglucosamine binding protein domain 2 DA442_RS22370 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DA442_RS22375 PF01734 Patatin-like phospholipase DA442_RS22380 PF01914 MarC family integral membrane protein DA442_RS22385 PF00881 Nitroreductase family DA442_RS22390 PF10531 SLBB domain DA442_RS22390 PF02563 Polysaccharide biosynthesis/export protein DA442_RS22390 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DA442_RS22395 PF01451 Low molecular weight phosphotyrosine protein phosphatase DA442_RS22400 PF13614 AAA domain DA442_RS22400 PF13807 G-rich domain on putative tyrosine kinase DA442_RS22400 PF02706 Chain length determinant protein DA442_RS22410 PF08803 Putative mono-oxygenase ydhR DA442_RS22415 PF03466 LysR substrate binding domain DA442_RS22415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS22425 PF00375 Sodium:dicarboxylate symporter family DA442_RS22430 PF06803 Protein of unknown function (DUF1232) DA442_RS22435 PF01546 Peptidase family M20/M25/M40 DA442_RS22435 PF07687 Peptidase dimerisation domain DA442_RS22440 PF07670 Nucleoside recognition DA442_RS22445 PF07670 Nucleoside recognition DA442_RS22460 PF00128 Alpha amylase, catalytic domain DA442_RS22465 PF00912 Transglycosylase DA442_RS22470 PF00128 Alpha amylase, catalytic domain DA442_RS22470 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DA442_RS22470 PF02806 Alpha amylase, C-terminal all-beta domain DA442_RS22475 PF02446 4-alpha-glucanotransferase DA442_RS22480 PF00343 Carbohydrate phosphorylase DA442_RS22495 PF00196 Bacterial regulatory proteins, luxR family DA442_RS22495 PF17874 MalT-like TPR region DA442_RS22510 PF02630 SCO1/SenC DA442_RS22520 PF02378 Phosphotransferase system, EIIC DA442_RS22520 PF00367 phosphotransferase system, EIIB DA442_RS22525 PF03193 RsgA GTPase DA442_RS22530 PF00375 Sodium:dicarboxylate symporter family DA442_RS22540 PF08543 Phosphomethylpyrimidine kinase DA442_RS22550 PF13520 Amino acid permease DA442_RS22555 PF01276 Orn/Lys/Arg decarboxylase, major domain DA442_RS22555 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DA442_RS22555 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DA442_RS22570 PF18494 Pullulanase Ins domain DA442_RS22570 PF03714 Bacterial pullanase-associated domain DA442_RS22570 PF11852 Domain of unknown function (DUF3372) DA442_RS22570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DA442_RS22570 PF17967 Pullulanase N2 domain DA442_RS22575 PF04231 Endonuclease I DA442_RS22585 PF00128 Alpha amylase, catalytic domain DA442_RS22585 PF16657 Maltogenic Amylase, C-terminal domain DA442_RS22585 PF02903 Alpha amylase, N-terminal ig-like domain DA442_RS22600 PF02264 LamB porin DA442_RS22605 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DA442_RS22605 PF00128 Alpha amylase, catalytic domain DA442_RS22615 PF07690 Major Facilitator Superfamily DA442_RS22625 PF01551 Peptidase family M23 DA442_RS22625 PF04225 Opacity-associated protein A LysM-like domain DA442_RS22635 PF05193 Peptidase M16 inactive domain DA442_RS22635 PF00675 Insulinase (Peptidase family M16) DA442_RS22640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS22640 PF17200 Single Cache domain 2 DA442_RS22640 PF00672 HAMP domain DA442_RS22645 PF00005 ABC transporter DA442_RS22650 PF01032 FecCD transport family DA442_RS22655 PF01032 FecCD transport family DA442_RS22660 PF01497 Periplasmic binding protein DA442_RS22665 PF07715 TonB-dependent Receptor Plug Domain DA442_RS22665 PF07660 Secretin and TonB N terminus short domain DA442_RS22665 PF00593 TonB dependent receptor DA442_RS22670 PF07715 TonB-dependent Receptor Plug Domain DA442_RS22670 PF00593 TonB dependent receptor DA442_RS22675 PF00206 Lyase DA442_RS22675 PF02655 ATP-grasp domain DA442_RS22680 PF04183 IucA / IucC family DA442_RS22680 PF06276 Ferric iron reductase FhuF-like transporter DA442_RS22690 PF04183 IucA / IucC family DA442_RS22690 PF06276 Ferric iron reductase FhuF-like transporter DA442_RS22695 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DA442_RS22695 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DA442_RS22700 PF01547 Bacterial extracellular solute-binding protein DA442_RS22705 PF08521 Two-component sensor kinase N-terminal DA442_RS22705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS22705 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS22710 PF00072 Response regulator receiver domain DA442_RS22710 PF00486 Transcriptional regulatory protein, C terminal DA442_RS22720 PF02378 Phosphotransferase system, EIIC DA442_RS22720 PF00367 phosphotransferase system, EIIB DA442_RS22730 PF01136 Peptidase family U32 DA442_RS22735 PF02653 Branched-chain amino acid transport system / permease component DA442_RS22740 PF00005 ABC transporter DA442_RS22745 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DA442_RS22755 PF00596 Class II Aldolase and Adducin N-terminal domain DA442_RS22760 PF11762 L-arabinose isomerase C-terminal domain DA442_RS22760 PF02610 L-arabinose isomerase DA442_RS22770 PF02311 AraC-like ligand binding domain DA442_RS22770 PF12833 Helix-turn-helix domain DA442_RS22785 PF02566 OsmC-like protein DA442_RS22790 PF01047 MarR family DA442_RS22795 PF10417 C-terminal domain of 1-Cys peroxiredoxin DA442_RS22795 PF00578 AhpC/TSA family DA442_RS22800 PF07992 Pyridine nucleotide-disulphide oxidoreductase DA442_RS22800 PF13192 Thioredoxin domain DA442_RS22830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS22830 PF03466 LysR substrate binding domain DA442_RS22840 PF01965 DJ-1/PfpI family DA442_RS22840 PF12833 Helix-turn-helix domain DA442_RS22845 PF04542 Sigma-70 region 2 DA442_RS22845 PF08281 Sigma-70, region 4 DA442_RS22860 PF00672 HAMP domain DA442_RS22860 PF02743 Cache domain DA442_RS22860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS22865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS22865 PF03466 LysR substrate binding domain DA442_RS22870 PF11975 Family 4 glycosyl hydrolase C-terminal domain DA442_RS22870 PF02056 Family 4 glycosyl hydrolase DA442_RS22885 PF03473 MOSC domain DA442_RS22885 PF03475 3-alpha domain DA442_RS22890 PF00271 Helicase conserved C-terminal domain DA442_RS22890 PF00270 DEAD/DEAH box helicase DA442_RS22895 PF03786 D-mannonate dehydratase (UxuA) DA442_RS22900 PF00392 Bacterial regulatory proteins, gntR family DA442_RS22900 PF07729 FCD domain DA442_RS22905 PF03480 Bacterial extracellular solute-binding protein, family 7 DA442_RS22910 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DA442_RS22915 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DA442_RS22920 PF01232 Mannitol dehydrogenase Rossmann domain DA442_RS22920 PF08125 Mannitol dehydrogenase C-terminal domain DA442_RS22925 PF02614 Glucuronate isomerase DA442_RS22930 PF00294 pfkB family carbohydrate kinase DA442_RS22935 PF01081 KDPG and KHG aldolase DA442_RS22940 PF10688 Bacterial inner membrane protein DA442_RS22960 PF12833 Helix-turn-helix domain DA442_RS22960 PF06719 AraC-type transcriptional regulator N-terminus DA442_RS22970 PF00005 ABC transporter DA442_RS22970 PF00664 ABC transporter transmembrane region DA442_RS22980 PF01037 Lrp/AsnC ligand binding domain DA442_RS23015 PF00474 Sodium:solute symporter family DA442_RS23025 PF01619 Proline dehydrogenase DA442_RS23025 PF00171 Aldehyde dehydrogenase family DA442_RS23025 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DA442_RS23025 PF14850 DNA-binding domain of Proline dehydrogenase DA442_RS23030 PF12833 Helix-turn-helix domain DA442_RS23045 PF01243 Pyridoxamine 5'-phosphate oxidase DA442_RS23045 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DA442_RS23050 PF02743 Cache domain DA442_RS23050 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS23050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS23055 PF00158 Sigma-54 interaction domain DA442_RS23055 PF00072 Response regulator receiver domain DA442_RS23055 PF02954 Bacterial regulatory protein, Fis family DA442_RS23060 PF00529 HlyD membrane-fusion protein of T1SS DA442_RS23075 PF03412 Peptidase C39 family DA442_RS23075 PF00005 ABC transporter DA442_RS23075 PF00664 ABC transporter transmembrane region DA442_RS23085 PF03358 NADPH-dependent FMN reductase DA442_RS23090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DA442_RS23095 PF00246 Zinc carboxypeptidase DA442_RS23100 PF01380 SIS domain DA442_RS23100 PF01418 Helix-turn-helix domain, rpiR family DA442_RS23110 PF01380 SIS domain DA442_RS23115 PF00367 phosphotransferase system, EIIB DA442_RS23115 PF02378 Phosphotransferase system, EIIC DA442_RS23120 PF00267 Gram-negative porin DA442_RS23125 PF03575 Peptidase family S51 DA442_RS23135 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_RS23145 PF13718 GNAT acetyltransferase 2 DA442_RS23145 PF05127 Helicase DA442_RS23150 PF02195 ParB-like nuclease domain DA442_RS23150 PF08775 ParB family DA442_RS23155 PF18607 ParA helix turn helix domain DA442_RS23155 PF13614 AAA domain DA442_RS23170 PF00005 ABC transporter DA442_RS23170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS23175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DA442_RS23175 PF00005 ABC transporter DA442_RS23185 PF08719 Domain of unknown function (DUF1768) DA442_RS23185 PF00925 GTP cyclohydrolase II DA442_RS23200 PF00072 Response regulator receiver domain DA442_RS23200 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS23200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS23200 PF00672 HAMP domain DA442_RS23200 PF17149 Periplasmic sensor domain found in signal transduction proteins DA442_RS23200 PF01627 Hpt domain DA442_RS23210 PF01709 Transcriptional regulator DA442_RS23215 PF01098 Cell cycle protein DA442_RS23230 PF00005 ABC transporter DA442_RS23250 PF06580 Histidine kinase DA442_RS23250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS23250 PF13492 GAF domain DA442_RS23250 PF07694 5TMR of 5TMR-LYT DA442_RS23255 PF04397 LytTr DNA-binding domain DA442_RS23255 PF00072 Response regulator receiver domain DA442_RS23265 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DA442_RS23270 PF00672 HAMP domain DA442_RS23270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS23270 PF17200 Single Cache domain 2 DA442_RS23285 PF00132 Bacterial transferase hexapeptide (six repeats) DA442_RS23300 PF03616 Sodium/glutamate symporter DA442_RS23310 PF00005 ABC transporter DA442_RS23315 PF00392 Bacterial regulatory proteins, gntR family DA442_RS23315 PF00155 Aminotransferase class I and II DA442_RS23320 PF03616 Sodium/glutamate symporter DA442_RS23335 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DA442_RS23350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS23350 PF03466 LysR substrate binding domain DA442_RS23355 PF02678 Pirin DA442_RS23355 PF17954 Quercetinase C-terminal cupin domain DA442_RS23360 PF07681 DoxX DA442_RS23375 PF00730 HhH-GPD superfamily base excision DNA repair protein DA442_RS23375 PF06029 AlkA N-terminal domain DA442_RS23380 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DA442_RS23380 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DA442_RS23390 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DA442_RS23400 PF03600 Citrate transporter DA442_RS23420 PF00704 Glycosyl hydrolases family 18 DA442_RS23420 PF08329 Chitinase A, N-terminal domain DA442_RS23430 PF06865 Pyrimidine/purine nucleoside phosphorylase DA442_RS23450 PF01554 MatE DA442_RS23455 PF00849 RNA pseudouridylate synthase DA442_RS23470 PF03466 LysR substrate binding domain DA442_RS23470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS23485 PF17152 Periplasmic sensor domain DA442_RS23485 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS23495 PF00756 Putative esterase DA442_RS23500 PF08240 Alcohol dehydrogenase GroES-like domain DA442_RS23500 PF00107 Zinc-binding dehydrogenase DA442_RS23505 PF00797 N-acetyltransferase DA442_RS23510 PF03466 LysR substrate binding domain DA442_RS23510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS23525 PF09339 IclR helix-turn-helix domain DA442_RS23525 PF01614 Bacterial transcriptional regulator DA442_RS23540 PF07883 Cupin domain DA442_RS23555 PF00294 pfkB family carbohydrate kinase DA442_RS23560 PF01081 KDPG and KHG aldolase DA442_RS23575 PF13229 Right handed beta helix region DA442_RS23580 PF00474 Sodium:solute symporter family DA442_RS23585 PF14583 Oligogalacturonate lyase DA442_RS23590 PF04954 Siderophore-interacting protein DA442_RS23590 PF08021 Siderophore-interacting FAD-binding domain DA442_RS23595 PF01810 LysE type translocator DA442_RS23600 PF01037 Lrp/AsnC ligand binding domain DA442_RS23605 PF18416 N-acetylglucosamine binding protein domain 2 DA442_RS23605 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DA442_RS23620 PF13599 Pentapeptide repeats (9 copies) DA442_RS23625 PF03922 OmpW family DA442_RS23630 PF13533 Biotin-lipoyl like DA442_RS23635 PF07690 Major Facilitator Superfamily DA442_RS23645 PF12706 Beta-lactamase superfamily domain DA442_RS23655 PF01204 Trehalase DA442_RS23660 PF01661 Macro domain DA442_RS23665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_RS23670 PF03466 LysR substrate binding domain DA442_RS23670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS23680 PF03466 LysR substrate binding domain DA442_RS23680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS23715 PF17853 GGDEF-like domain DA442_RS23715 PF13556 PucR C-terminal helix-turn-helix domain DA442_RS23715 PF05651 Putative sugar diacid recognition DA442_RS23720 PF02447 GntP family permease DA442_RS23725 PF02595 Glycerate kinase family DA442_RS23750 PF00583 Acetyltransferase (GNAT) family DA442_RS23775 PF03264 NapC/NirT cytochrome c family, N-terminal region DA442_RS23780 PF18364 Molybdopterin oxidoreductase N-terminal domain DA442_RS23780 PF00384 Molybdopterin oxidoreductase DA442_RS23780 PF01568 Molydopterin dinucleotide binding domain DA442_RS23790 PF02581 Thiamine monophosphate synthase DA442_RS23795 PF02110 Hydroxyethylthiazole kinase family DA442_RS23800 PF03070 TENA/THI-4/PQQC family DA442_RS23805 PF09084 NMT1/THI5 like DA442_RS23810 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS23815 PF00005 ABC transporter DA442_RS23820 PF08543 Phosphomethylpyrimidine kinase DA442_RS23835 PF01523 Putative modulator of DNA gyrase DA442_RS23840 PF04013 Putative SAM-dependent RNA methyltransferase DA442_RS23895 PF10928 Protein of unknown function (DUF2810) DA442_RS23900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DA442_RS23900 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DA442_RS23910 PF03009 Glycerophosphoryl diester phosphodiesterase family DA442_RS23915 PF00056 lactate/malate dehydrogenase, NAD binding domain DA442_RS23915 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DA442_RS23920 PF00072 Response regulator receiver domain DA442_RS23920 PF00486 Transcriptional regulatory protein, C terminal DA442_RS23925 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS23925 PF00672 HAMP domain DA442_RS23925 PF16750 Sensor domain of 2-component histidine kinase DA442_RS23925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS23930 PF07715 TonB-dependent Receptor Plug Domain DA442_RS23930 PF00593 TonB dependent receptor DA442_RS23940 PF01618 MotA/TolQ/ExbB proton channel family DA442_RS23945 PF01618 MotA/TolQ/ExbB proton channel family DA442_RS23950 PF02472 Biopolymer transport protein ExbD/TolR DA442_RS23990 PF01297 Zinc-uptake complex component A periplasmic DA442_RS23995 PF00005 ABC transporter DA442_RS24000 PF00950 ABC 3 transport family DA442_RS24015 PF00326 Prolyl oligopeptidase family DA442_RS24015 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DA442_RS24020 PF07690 Major Facilitator Superfamily DA442_RS24025 PF00491 Arginase family DA442_RS24030 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DA442_RS24030 PF17944 Arginine decarboxylase C-terminal helical extension DA442_RS24030 PF17810 Arginine decarboxylase helical bundle domain DA442_RS24035 PF00753 Metallo-beta-lactamase superfamily DA442_RS24040 PF18030 RimK PreATP-grasp domain DA442_RS24040 PF08443 RimK-like ATP-grasp domain DA442_RS24045 PF08443 RimK-like ATP-grasp domain DA442_RS24045 PF18030 RimK PreATP-grasp domain DA442_RS24055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS24055 PF03466 LysR substrate binding domain DA442_RS24080 PF00232 Glycosyl hydrolase family 1 DA442_RS24090 PF00512 His Kinase A (phospho-acceptor) domain DA442_RS24090 PF02743 Cache domain DA442_RS24090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DA442_RS24095 PF00158 Sigma-54 interaction domain DA442_RS24095 PF00072 Response regulator receiver domain DA442_RS24095 PF02954 Bacterial regulatory protein, Fis family DA442_RS24105 PF05525 Branched-chain amino acid transport protein DA442_RS24130 PF01266 FAD dependent oxidoreductase DA442_RS24140 PF01212 Beta-eliminating lyase DA442_RS24160 PF01773 Na+ dependent nucleoside transporter N-terminus DA442_RS24160 PF07662 Na+ dependent nucleoside transporter C-terminus DA442_RS24160 PF07670 Nucleoside recognition DA442_RS24170 PF13532 2OG-Fe(II) oxygenase superfamily DA442_RS24175 PF05230 MASE2 domain DA442_RS24175 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS24180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS24180 PF00672 HAMP domain DA442_RS24180 PF12729 Four helix bundle sensory module for signal transduction DA442_RS24195 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS24200 PF00875 DNA photolyase DA442_RS24200 PF03441 FAD binding domain of DNA photolyase DA442_RS24205 PF04244 Deoxyribodipyrimidine photo-lyase-related protein DA442_RS24220 PF01625 Peptide methionine sulfoxide reductase DA442_RS24220 PF01641 SelR domain DA442_RS24225 PF02566 OsmC-like protein DA442_RS24230 PF12464 Maltose acetyltransferase DA442_RS24230 PF14602 Hexapeptide repeat of succinyl-transferase DA442_RS24265 PF03466 LysR substrate binding domain DA442_RS24265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS24270 PF13419 Haloacid dehalogenase-like hydrolase DA442_RS24285 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) DA442_RS24290 PF00194 Eukaryotic-type carbonic anhydrase DA442_RS24295 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DA442_RS24300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DA442_RS24305 PF12704 MacB-like periplasmic core domain DA442_RS24305 PF00005 ABC transporter DA442_RS24305 PF02687 FtsX-like permease family DA442_RS24310 PF02321 Outer membrane efflux protein DA442_RS24315 PF00657 GDSL-like Lipase/Acylhydrolase DA442_RS24320 PF05922 Peptidase inhibitor I9 DA442_RS24320 PF00082 Subtilase family DA442_RS24330 PF03611 PTS system sugar-specific permease component DA442_RS24340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA442_RS24345 PF00356 Bacterial regulatory proteins, lacI family DA442_RS24350 PF13419 Haloacid dehalogenase-like hydrolase DA442_RS24355 PF00202 Aminotransferase class-III DA442_RS24360 PF00266 Aminotransferase class-V DA442_RS24380 PF00528 Binding-protein-dependent transport system inner membrane component DA442_RS24385 PF07702 UTRA domain DA442_RS24385 PF00392 Bacterial regulatory proteins, gntR family DA442_RS24400 PF04393 Protein of unknown function (DUF535) DA442_RS24410 PF01266 FAD dependent oxidoreductase DA442_RS24425 PF01389 OmpA-like transmembrane domain DA442_RS24425 PF00691 OmpA family DA442_RS24430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS24430 PF03466 LysR substrate binding domain DA442_RS24440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS24440 PF03466 LysR substrate binding domain DA442_RS24455 PF03313 Serine dehydratase alpha chain DA442_RS24455 PF03315 Serine dehydratase beta chain DA442_RS24475 PF00133 tRNA synthetases class I (I, L, M and V) DA442_RS24475 PF08264 Anticodon-binding domain of tRNA DA442_RS24485 PF01464 Transglycosylase SLT domain DA442_RS24505 PF00460 Flagella basal body rod protein DA442_RS24510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_RS24510 PF00460 Flagella basal body rod protein DA442_RS24515 PF13860 FlgD Ig-like domain DA442_RS24515 PF13861 FlgD Tudor-like domain DA442_RS24515 PF03963 Flagellar hook capping protein - N-terminal region DA442_RS24520 PF00460 Flagella basal body rod protein DA442_RS24520 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_RS24520 PF07559 Flagellar basal body protein FlaE DA442_RS24525 PF00460 Flagella basal body rod protein DA442_RS24525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_RS24530 PF00460 Flagella basal body rod protein DA442_RS24530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DA442_RS24535 PF02107 Flagellar L-ring protein DA442_RS24540 PF02119 Flagellar P-ring protein DA442_RS24545 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DA442_RS24545 PF10135 Rod binding protein DA442_RS24555 PF00669 Bacterial flagellin N-terminal helical region DA442_RS24575 PF01070 FMN-dependent dehydrogenase DA442_RS24590 PF00581 Rhodanese-like domain DA442_RS24600 PF00118 TCP-1/cpn60 chaperonin family DA442_RS24615 PF01810 LysE type translocator DA442_RS24620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS24620 PF03466 LysR substrate binding domain DA442_RS24635 PF00440 Bacterial regulatory proteins, tetR family DA442_RS24635 PF08359 YsiA-like protein, C-terminal region DA442_RS24645 PF00149 Calcineurin-like phosphoesterase DA442_RS24645 PF02872 5'-nucleotidase, C-terminal domain DA442_RS24650 PF03060 Nitronate monooxygenase DA442_RS24660 PF17678 Glycosyl hydrolase family 92 N-terminal domain DA442_RS24660 PF07971 Glycosyl hydrolase family 92 DA442_RS24670 PF07971 Glycosyl hydrolase family 92 DA442_RS24670 PF17678 Glycosyl hydrolase family 92 N-terminal domain DA442_RS24675 PF17678 Glycosyl hydrolase family 92 N-terminal domain DA442_RS24675 PF07971 Glycosyl hydrolase family 92 DA442_RS24690 PF01641 SelR domain DA442_RS24690 PF01625 Peptide methionine sulfoxide reductase DA442_RS24695 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DA442_RS24700 PF08220 DeoR-like helix-turn-helix domain DA442_RS24700 PF00455 DeoR C terminal sensor domain DA442_RS24710 PF06628 Catalase-related immune-responsive DA442_RS24710 PF00199 Catalase DA442_RS24720 PF00857 Isochorismatase family DA442_RS24730 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DA442_RS24730 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DA442_RS24760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS24760 PF03466 LysR substrate binding domain DA442_RS24765 PF00691 OmpA family DA442_RS24765 PF01389 OmpA-like transmembrane domain DA442_RS24775 PF06629 MltA-interacting protein MipA DA442_RS24785 PF04170 NlpE N-terminal domain DA442_RS24785 PF17185 NlpE C-terminal OB domain DA442_RS24790 PF02001 Protein of unknown function DUF134 DA442_RS24815 PF00009 Elongation factor Tu GTP binding domain DA442_RS24815 PF03764 Elongation factor G, domain IV DA442_RS24815 PF00679 Elongation factor G C-terminus DA442_RS24815 PF14492 Elongation Factor G, domain II DA442_RS24815 PF03144 Elongation factor Tu domain 2 DA442_RS24835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS24835 PF03466 LysR substrate binding domain DA442_RS24855 PF00376 MerR family regulatory protein DA442_RS24855 PF09278 MerR, DNA binding DA442_RS24885 PF13091 PLD-like domain DA442_RS24895 PF13533 Biotin-lipoyl like DA442_RS24900 PF00873 AcrB/AcrD/AcrF family DA442_RS24930 PF08402 TOBE domain DA442_RS24930 PF00005 ABC transporter DA442_RS24955 PF07702 UTRA domain DA442_RS24955 PF00392 Bacterial regulatory proteins, gntR family DA442_RS24960 PF02028 BCCT, betaine/carnitine/choline family transporter DA442_RS24965 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 DA442_RS24965 PF02837 Glycosyl hydrolases family 2, sugar binding domain DA442_RS24965 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DA442_RS24965 PF00703 Glycosyl hydrolases family 2 DA442_RS24970 PF00196 Bacterial regulatory proteins, luxR family DA442_RS24980 PF07694 5TMR of 5TMR-LYT DA442_RS24980 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS24995 PF00873 AcrB/AcrD/AcrF family DA442_RS25000 PF13533 Biotin-lipoyl like DA442_RS25005 PF03466 LysR substrate binding domain DA442_RS25005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS25015 PF13416 Bacterial extracellular solute-binding protein DA442_RS25020 PF00579 tRNA synthetases class I (W and Y) DA442_RS25040 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DA442_RS25040 PF02896 PEP-utilising enzyme, TIM barrel domain DA442_RS25040 PF00391 PEP-utilising enzyme, mobile domain DA442_RS25045 PF03618 Kinase/pyrophosphorylase DA442_RS25050 PF17763 Glutaminase/Asparaginase C-terminal domain DA442_RS25050 PF00710 Asparaginase, N-terminal DA442_RS25055 PF00709 Adenylosuccinate synthetase DA442_RS25060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS25060 PF03466 LysR substrate binding domain DA442_RS25080 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) DA442_RS25090 PF12833 Helix-turn-helix domain DA442_RS25090 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DA442_RS25105 PF08240 Alcohol dehydrogenase GroES-like domain DA442_RS25105 PF00107 Zinc-binding dehydrogenase DA442_RS25110 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DA442_RS25120 PF03466 LysR substrate binding domain DA442_RS25120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS25125 PF03466 LysR substrate binding domain DA442_RS25125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS25135 PF00271 Helicase conserved C-terminal domain DA442_RS25135 PF00270 DEAD/DEAH box helicase DA442_RS25150 PF00535 Glycosyl transferase family 2 DA442_RS25180 PF00155 Aminotransferase class I and II DA442_RS25185 PF12833 Helix-turn-helix domain DA442_RS25185 PF01497 Periplasmic binding protein DA442_RS25215 PF05661 Protein of unknown function (DUF808) DA442_RS25220 PF01979 Amidohydrolase family DA442_RS25230 PF01679 Proteolipid membrane potential modulator DA442_RS25240 PF03473 MOSC domain DA442_RS25240 PF00111 2Fe-2S iron-sulfur cluster binding domain DA442_RS25240 PF03473 MOSC domain DA442_RS25240 PF00111 2Fe-2S iron-sulfur cluster binding domain DA442_RS25240 PF03476 MOSC N-terminal beta barrel domain DA442_RS25240 PF03476 MOSC N-terminal beta barrel domain DA442_RS25245 PF02540 NAD synthase DA442_RS25250 PF01467 Cytidylyltransferase-like DA442_RS25290 PF00005 ABC transporter DA442_RS25295 PF01032 FecCD transport family DA442_RS25305 PF02472 Biopolymer transport protein ExbD/TolR DA442_RS25310 PF01618 MotA/TolQ/ExbB proton channel family DA442_RS25315 PF03544 Gram-negative bacterial TonB protein C-terminal DA442_RS25320 PF04055 Radical SAM superfamily DA442_RS25325 PF06228 Haem utilisation ChuX/HutX DA442_RS25330 PF01243 Pyridoxamine 5'-phosphate oxidase DA442_RS25340 PF01584 CheW-like domain DA442_RS25340 PF00072 Response regulator receiver domain DA442_RS25370 PF00271 Helicase conserved C-terminal domain DA442_RS25370 PF08494 DEAD/H associated DA442_RS25370 PF00270 DEAD/DEAH box helicase DA442_RS25375 PF00082 Subtilase family DA442_RS25395 PF00141 Peroxidase DA442_RS25400 PF00210 Ferritin-like domain DA442_RS25410 PF03466 LysR substrate binding domain DA442_RS25410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS25425 PF01752 Collagenase DA442_RS25425 PF08453 Peptidase family M9 N-terminal DA442_RS25425 PF04151 Bacterial pre-peptidase C-terminal domain DA442_RS25435 PF00128 Alpha amylase, catalytic domain DA442_RS25455 PF02525 Flavodoxin-like fold DA442_RS25460 PF00582 Universal stress protein family DA442_RS25465 PF00005 ABC transporter DA442_RS25465 PF16326 ABC transporter C-terminal domain DA442_RS25465 PF12848 ABC transporter DA442_RS25470 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DA442_RS25470 PF00326 Prolyl oligopeptidase family DA442_RS25480 PF13533 Biotin-lipoyl like DA442_RS25485 PF00873 AcrB/AcrD/AcrF family DA442_RS25490 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DA442_RS25500 PF13302 Acetyltransferase (GNAT) domain DA442_RS25510 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS25530 PF00873 AcrB/AcrD/AcrF family DA442_RS25555 PF01568 Molydopterin dinucleotide binding domain DA442_RS25555 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DA442_RS25555 PF00384 Molybdopterin oxidoreductase DA442_RS25555 PF12838 4Fe-4S dicluster domain DA442_RS25555 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DA442_RS25575 PF00005 ABC transporter DA442_RS25585 PF00672 HAMP domain DA442_RS25585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS25595 PF10282 Lactonase, 7-bladed beta-propeller DA442_RS25600 PF02567 Phenazine biosynthesis-like protein DA442_RS25605 PF01161 Phosphatidylethanolamine-binding protein DA442_RS25615 PF01758 Sodium Bile acid symporter family DA442_RS25635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DA442_RS25640 PF02378 Phosphotransferase system, EIIC DA442_RS25640 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DA442_RS25645 PF00107 Zinc-binding dehydrogenase DA442_RS25645 PF08240 Alcohol dehydrogenase GroES-like domain DA442_RS25680 PF03222 Tryptophan/tyrosine permease family DA442_RS25690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DA442_RS25690 PF00672 HAMP domain DA442_RS25690 PF02743 Cache domain DA442_RS25695 PF07670 Nucleoside recognition DA442_RS25720 PF01551 Peptidase family M23 DA442_RS25720 PF08525 Opacity-associated protein A N-terminal motif DA442_RS25720 PF01476 LysM domain DA442_RS25725 PF08447 PAS fold DA442_RS25725 PF00563 EAL domain DA442_RS25725 PF00990 Diguanylate cyclase, GGDEF domain DA442_RS25725 PF08448 PAS fold DA442_RS25730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DA442_RS25730 PF03466 LysR substrate binding domain DA442_RS25735 PF07690 Major Facilitator Superfamily DA442_RS25755 PF00462 Glutaredoxin DA442_RS25760 PF00892 EamA-like transporter family DA442_RS25775 PF01557 Fumarylacetoacetate (FAA) hydrolase family DA442_RS25790 PF12833 Helix-turn-helix domain DA442_RS25795 PF01810 LysE type translocator DA442_RS25810 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DA442_RS25810 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DA442_RS25815 PF00115 Cytochrome C and Quinol oxidase polypeptide I DA442_RS25820 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 DA442_RS25825 PF00510 Cytochrome c oxidase subunit III DA442_RS25845 PF02628 Cytochrome oxidase assembly protein DA442_RS25850 PF01040 UbiA prenyltransferase family DA442_RS25855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DA442_RS25855 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase