locus-tag class description H5404_RS00035 PF00005 ABC transporter H5404_RS00040 PF01032 FecCD transport family H5404_RS00045 PF01032 FecCD transport family H5404_RS00050 PF01497 Periplasmic binding protein H5404_RS00055 PF00593 TonB dependent receptor H5404_RS00055 PF07660 Secretin and TonB N terminus short domain H5404_RS00055 PF07715 TonB-dependent Receptor Plug Domain H5404_RS00060 PF07715 TonB-dependent Receptor Plug Domain H5404_RS00060 PF00593 TonB dependent receptor H5404_RS00065 PF00206 Lyase H5404_RS00065 PF02655 ATP-grasp domain H5404_RS00070 PF06276 Ferric iron reductase FhuF-like transporter H5404_RS00070 PF04183 IucA / IucC family H5404_RS00080 PF06276 Ferric iron reductase FhuF-like transporter H5404_RS00080 PF04183 IucA / IucC family H5404_RS00085 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H5404_RS00085 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H5404_RS00090 PF01547 Bacterial extracellular solute-binding protein H5404_RS00095 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS00095 PF08521 Two-component sensor kinase N-terminal H5404_RS00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS00100 PF00072 Response regulator receiver domain H5404_RS00100 PF00486 Transcriptional regulatory protein, C terminal H5404_RS00105 PF00367 phosphotransferase system, EIIB H5404_RS00105 PF02378 Phosphotransferase system, EIIC H5404_RS00115 PF01136 Peptidase family U32 H5404_RS00120 PF02653 Branched-chain amino acid transport system / permease component H5404_RS00125 PF00005 ABC transporter H5404_RS00130 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H5404_RS00135 PF00370 FGGY family of carbohydrate kinases, N-terminal domain H5404_RS00135 PF02782 FGGY family of carbohydrate kinases, C-terminal domain H5404_RS00140 PF00596 Class II Aldolase and Adducin N-terminal domain H5404_RS00145 PF02610 L-arabinose isomerase H5404_RS00145 PF11762 L-arabinose isomerase C-terminal domain H5404_RS00155 PF02311 AraC-like ligand binding domain H5404_RS00155 PF12833 Helix-turn-helix domain H5404_RS00170 PF02566 OsmC-like protein H5404_RS00175 PF01047 MarR family H5404_RS00180 PF10417 C-terminal domain of 1-Cys peroxiredoxin H5404_RS00180 PF00578 AhpC/TSA family H5404_RS00185 PF13192 Thioredoxin domain H5404_RS00185 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS00210 PF03466 LysR substrate binding domain H5404_RS00210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS00215 PF01965 DJ-1/PfpI family H5404_RS00215 PF12833 Helix-turn-helix domain H5404_RS00220 PF04542 Sigma-70 region 2 H5404_RS00220 PF08281 Sigma-70, region 4 H5404_RS00230 PF02743 Cache domain H5404_RS00230 PF00672 HAMP domain H5404_RS00230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS00235 PF03466 LysR substrate binding domain H5404_RS00235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS00240 PF11975 Family 4 glycosyl hydrolase C-terminal domain H5404_RS00240 PF02056 Family 4 glycosyl hydrolase H5404_RS00255 PF03475 3-alpha domain H5404_RS00255 PF03473 MOSC domain H5404_RS00260 PF00271 Helicase conserved C-terminal domain H5404_RS00260 PF00270 DEAD/DEAH box helicase H5404_RS00275 PF12833 Helix-turn-helix domain H5404_RS00275 PF06719 AraC-type transcriptional regulator N-terminus H5404_RS00285 PF00664 ABC transporter transmembrane region H5404_RS00285 PF00005 ABC transporter H5404_RS00295 PF01037 Lrp/AsnC ligand binding domain H5404_RS00330 PF00474 Sodium:solute symporter family H5404_RS00340 PF01619 Proline dehydrogenase H5404_RS00340 PF00171 Aldehyde dehydrogenase family H5404_RS00340 PF18327 Proline utilization A proline dehydrogenase N-terminal domain H5404_RS00340 PF14850 DNA-binding domain of Proline dehydrogenase H5404_RS00345 PF12833 Helix-turn-helix domain H5404_RS00355 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region H5404_RS00355 PF01243 Pyridoxamine 5'-phosphate oxidase H5404_RS00365 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS00365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS00365 PF02743 Cache domain H5404_RS00370 PF02954 Bacterial regulatory protein, Fis family H5404_RS00370 PF00072 Response regulator receiver domain H5404_RS00370 PF00158 Sigma-54 interaction domain H5404_RS00375 PF00529 HlyD membrane-fusion protein of T1SS H5404_RS00390 PF00005 ABC transporter H5404_RS00390 PF03412 Peptidase C39 family H5404_RS00390 PF00664 ABC transporter transmembrane region H5404_RS00400 PF03358 NADPH-dependent FMN reductase H5404_RS00405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_RS00410 PF00246 Zinc carboxypeptidase H5404_RS00415 PF01380 SIS domain H5404_RS00415 PF01418 Helix-turn-helix domain, rpiR family H5404_RS00420 PF01380 SIS domain H5404_RS00425 PF00367 phosphotransferase system, EIIB H5404_RS00425 PF02378 Phosphotransferase system, EIIC H5404_RS00430 PF00267 Gram-negative porin H5404_RS00435 PF03575 Peptidase family S51 H5404_RS00440 PF03466 LysR substrate binding domain H5404_RS00440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS00445 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_RS00455 PF05127 Helicase H5404_RS00455 PF13718 GNAT acetyltransferase 2 H5404_RS00460 PF02195 ParB-like nuclease domain H5404_RS00460 PF08775 ParB family H5404_RS00465 PF13614 AAA domain H5404_RS00465 PF18607 ParA helix turn helix domain H5404_RS00480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS00480 PF00005 ABC transporter H5404_RS00485 PF00005 ABC transporter H5404_RS00485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS00495 PF08719 Domain of unknown function (DUF1768) H5404_RS00495 PF00925 GTP cyclohydrolase II H5404_RS00505 PF17149 Periplasmic sensor domain found in signal transduction proteins H5404_RS00505 PF01627 Hpt domain H5404_RS00505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS00505 PF00072 Response regulator receiver domain H5404_RS00505 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS00505 PF00672 HAMP domain H5404_RS00515 PF01709 Transcriptional regulator H5404_RS00520 PF01098 Cell cycle protein H5404_RS00530 PF00005 ABC transporter H5404_RS00550 PF07694 5TMR of 5TMR-LYT H5404_RS00550 PF06580 Histidine kinase H5404_RS00550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS00550 PF13492 GAF domain H5404_RS00555 PF04397 LytTr DNA-binding domain H5404_RS00555 PF00072 Response regulator receiver domain H5404_RS00565 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H5404_RS00570 PF00672 HAMP domain H5404_RS00570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS00570 PF17200 Single Cache domain 2 H5404_RS00585 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_RS00590 PF03616 Sodium/glutamate symporter H5404_RS00600 PF00005 ABC transporter H5404_RS00605 PF00392 Bacterial regulatory proteins, gntR family H5404_RS00605 PF00155 Aminotransferase class I and II H5404_RS00610 PF03616 Sodium/glutamate symporter H5404_RS00620 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase H5404_RS00635 PF03466 LysR substrate binding domain H5404_RS00635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS00640 PF17954 Quercetinase C-terminal cupin domain H5404_RS00640 PF02678 Pirin H5404_RS00645 PF07681 DoxX H5404_RS00655 PF06029 AlkA N-terminal domain H5404_RS00655 PF00730 HhH-GPD superfamily base excision DNA repair protein H5404_RS00660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain H5404_RS00660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain H5404_RS00670 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 H5404_RS00680 PF03600 Citrate transporter H5404_RS00700 PF00704 Glycosyl hydrolases family 18 H5404_RS00700 PF08329 Chitinase A, N-terminal domain H5404_RS00710 PF06865 Pyrimidine/purine nucleoside phosphorylase H5404_RS00720 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS00720 PF00563 EAL domain H5404_RS00725 PF01554 MatE H5404_RS00730 PF00849 RNA pseudouridylate synthase H5404_RS00745 PF03466 LysR substrate binding domain H5404_RS00745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS00760 PF17152 Periplasmic sensor domain H5404_RS00760 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS00770 PF00756 Putative esterase H5404_RS00775 PF08240 Alcohol dehydrogenase GroES-like domain H5404_RS00775 PF00107 Zinc-binding dehydrogenase H5404_RS00780 PF00797 N-acetyltransferase H5404_RS00785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS00785 PF03466 LysR substrate binding domain H5404_RS00800 PF01614 Bacterial transcriptional regulator H5404_RS00800 PF09339 IclR helix-turn-helix domain H5404_RS00810 PF10688 Bacterial inner membrane protein H5404_RS00815 PF07883 Cupin domain H5404_RS00830 PF00294 pfkB family carbohydrate kinase H5404_RS00835 PF01081 KDPG and KHG aldolase H5404_RS00850 PF13229 Right handed beta helix region H5404_RS00855 PF00474 Sodium:solute symporter family H5404_RS00860 PF14583 Oligogalacturonate lyase H5404_RS00865 PF04954 Siderophore-interacting protein H5404_RS00865 PF08021 Siderophore-interacting FAD-binding domain H5404_RS00870 PF01810 LysE type translocator H5404_RS00875 PF01037 Lrp/AsnC ligand binding domain H5404_RS00880 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading H5404_RS00880 PF18416 N-acetylglucosamine binding protein domain 2 H5404_RS00895 PF13599 Pentapeptide repeats (9 copies) H5404_RS00900 PF03922 OmpW family H5404_RS00905 PF13533 Biotin-lipoyl like H5404_RS00910 PF07690 Major Facilitator Superfamily H5404_RS00920 PF12706 Beta-lactamase superfamily domain H5404_RS00930 PF01204 Trehalase H5404_RS00935 PF01661 Macro domain H5404_RS00940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_RS00945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS00945 PF03466 LysR substrate binding domain H5404_RS00955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS00955 PF03466 LysR substrate binding domain H5404_RS00970 PF13419 Haloacid dehalogenase-like hydrolase H5404_RS00995 PF05651 Putative sugar diacid recognition H5404_RS00995 PF13556 PucR C-terminal helix-turn-helix domain H5404_RS00995 PF17853 GGDEF-like domain H5404_RS01000 PF02447 GntP family permease H5404_RS01005 PF02595 Glycerate kinase family H5404_RS01010 PF00155 Aminotransferase class I and II H5404_RS01010 PF00392 Bacterial regulatory proteins, gntR family H5404_RS01030 PF00583 Acetyltransferase (GNAT) family H5404_RS01055 PF03264 NapC/NirT cytochrome c family, N-terminal region H5404_RS01060 PF01568 Molydopterin dinucleotide binding domain H5404_RS01060 PF00384 Molybdopterin oxidoreductase H5404_RS01060 PF18364 Molybdopterin oxidoreductase N-terminal domain H5404_RS01070 PF02581 Thiamine monophosphate synthase H5404_RS01075 PF02110 Hydroxyethylthiazole kinase family H5404_RS01080 PF03070 TENA/THI-4/PQQC family H5404_RS01085 PF09084 NMT1/THI5 like H5404_RS01090 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS01095 PF00005 ABC transporter H5404_RS01100 PF08543 Phosphomethylpyrimidine kinase H5404_RS01105 PF01523 Putative modulator of DNA gyrase H5404_RS01110 PF01523 Putative modulator of DNA gyrase H5404_RS01115 PF04013 Putative SAM-dependent RNA methyltransferase H5404_RS01165 PF10928 Protein of unknown function (DUF2810) H5404_RS01170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H5404_RS01170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5404_RS01180 PF03009 Glycerophosphoryl diester phosphodiesterase family H5404_RS01185 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain H5404_RS01185 PF00056 lactate/malate dehydrogenase, NAD binding domain H5404_RS01190 PF00072 Response regulator receiver domain H5404_RS01190 PF00486 Transcriptional regulatory protein, C terminal H5404_RS01195 PF00672 HAMP domain H5404_RS01195 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS01195 PF16750 Sensor domain of 2-component histidine kinase H5404_RS01195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS01200 PF00593 TonB dependent receptor H5404_RS01200 PF07715 TonB-dependent Receptor Plug Domain H5404_RS01210 PF01618 MotA/TolQ/ExbB proton channel family H5404_RS01215 PF01618 MotA/TolQ/ExbB proton channel family H5404_RS01220 PF02472 Biopolymer transport protein ExbD/TolR H5404_RS01260 PF01297 Zinc-uptake complex component A periplasmic H5404_RS01265 PF00005 ABC transporter H5404_RS01270 PF00950 ABC 3 transport family H5404_RS01285 PF00326 Prolyl oligopeptidase family H5404_RS01285 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H5404_RS01290 PF07690 Major Facilitator Superfamily H5404_RS01295 PF00491 Arginase family H5404_RS01300 PF17944 Arginine decarboxylase C-terminal helical extension H5404_RS01300 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H5404_RS01300 PF17810 Arginine decarboxylase helical bundle domain H5404_RS01305 PF00753 Metallo-beta-lactamase superfamily H5404_RS01310 PF08443 RimK-like ATP-grasp domain H5404_RS01310 PF18030 RimK PreATP-grasp domain H5404_RS01315 PF18030 RimK PreATP-grasp domain H5404_RS01315 PF08443 RimK-like ATP-grasp domain H5404_RS01325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS01325 PF03466 LysR substrate binding domain H5404_RS01350 PF00232 Glycosyl hydrolase family 1 H5404_RS01355 PF02743 Cache domain H5404_RS01355 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS01355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS01360 PF00072 Response regulator receiver domain H5404_RS01360 PF00158 Sigma-54 interaction domain H5404_RS01360 PF02954 Bacterial regulatory protein, Fis family H5404_RS01365 PF08448 PAS fold H5404_RS01365 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS01370 PF05525 Branched-chain amino acid transport protein H5404_RS01385 PF01266 FAD dependent oxidoreductase H5404_RS01395 PF01212 Beta-eliminating lyase H5404_RS01410 PF07670 Nucleoside recognition H5404_RS01410 PF07662 Na+ dependent nucleoside transporter C-terminus H5404_RS01410 PF01773 Na+ dependent nucleoside transporter N-terminus H5404_RS01420 PF13532 2OG-Fe(II) oxygenase superfamily H5404_RS01425 PF05230 MASE2 domain H5404_RS01425 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS01430 PF12729 Four helix bundle sensory module for signal transduction H5404_RS01430 PF00672 HAMP domain H5404_RS01430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS01445 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS01450 PF00875 DNA photolyase H5404_RS01450 PF03441 FAD binding domain of DNA photolyase H5404_RS01455 PF04244 Deoxyribodipyrimidine photo-lyase-related protein H5404_RS01460 PF04055 Radical SAM superfamily H5404_RS01460 PF00919 Uncharacterized protein family UPF0004 H5404_RS01470 PF01641 SelR domain H5404_RS01470 PF01625 Peptide methionine sulfoxide reductase H5404_RS01475 PF02566 OsmC-like protein H5404_RS01505 PF02566 OsmC-like protein H5404_RS01510 PF14602 Hexapeptide repeat of succinyl-transferase H5404_RS01510 PF12464 Maltose acetyltransferase H5404_RS01545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS01545 PF03466 LysR substrate binding domain H5404_RS01550 PF13419 Haloacid dehalogenase-like hydrolase H5404_RS01565 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) H5404_RS01570 PF00194 Eukaryotic-type carbonic anhydrase H5404_RS01575 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H5404_RS01580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS01585 PF12704 MacB-like periplasmic core domain H5404_RS01585 PF02687 FtsX-like permease family H5404_RS01585 PF00005 ABC transporter H5404_RS01590 PF02321 Outer membrane efflux protein H5404_RS01595 PF00657 GDSL-like Lipase/Acylhydrolase H5404_RS01600 PF00082 Subtilase family H5404_RS01600 PF05922 Peptidase inhibitor I9 H5404_RS01610 PF03611 PTS system sugar-specific permease component H5404_RS01620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5404_RS01625 PF00356 Bacterial regulatory proteins, lacI family H5404_RS01630 PF13419 Haloacid dehalogenase-like hydrolase H5404_RS01635 PF00202 Aminotransferase class-III H5404_RS01640 PF00266 Aminotransferase class-V H5404_RS01655 PF00005 ABC transporter H5404_RS01660 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS01665 PF00392 Bacterial regulatory proteins, gntR family H5404_RS01665 PF07702 UTRA domain H5404_RS01680 PF04393 Protein of unknown function (DUF535) H5404_RS01685 PF01266 FAD dependent oxidoreductase H5404_RS01690 PF18027 Cytosolic carboxypeptidase N-terminal domain H5404_RS01690 PF00246 Zinc carboxypeptidase H5404_RS01695 PF01389 OmpA-like transmembrane domain H5404_RS01695 PF00691 OmpA family H5404_RS01700 PF03466 LysR substrate binding domain H5404_RS01700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS01710 PF03466 LysR substrate binding domain H5404_RS01710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS01720 PF00854 POT family H5404_RS01725 PF03315 Serine dehydratase beta chain H5404_RS01725 PF03313 Serine dehydratase alpha chain H5404_RS01745 PF00133 tRNA synthetases class I (I, L, M and V) H5404_RS01745 PF08264 Anticodon-binding domain of tRNA H5404_RS01750 PF01464 Transglycosylase SLT domain H5404_RS01770 PF00460 Flagella basal body rod protein H5404_RS01775 PF00460 Flagella basal body rod protein H5404_RS01775 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_RS01780 PF13861 FlgD Tudor-like domain H5404_RS01780 PF13860 FlgD Ig-like domain H5404_RS01780 PF03963 Flagellar hook capping protein - N-terminal region H5404_RS01785 PF00460 Flagella basal body rod protein H5404_RS01785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_RS01785 PF07559 Flagellar basal body protein FlaE H5404_RS01790 PF00460 Flagella basal body rod protein H5404_RS01790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_RS01795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_RS01795 PF00460 Flagella basal body rod protein H5404_RS01800 PF02107 Flagellar L-ring protein H5404_RS01805 PF02119 Flagellar P-ring protein H5404_RS01810 PF10135 Rod binding protein H5404_RS01810 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase H5404_RS01815 PF00460 Flagella basal body rod protein H5404_RS01815 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_RS01820 PF00669 Bacterial flagellin N-terminal helical region H5404_RS01840 PF01070 FMN-dependent dehydrogenase H5404_RS01865 PF00581 Rhodanese-like domain H5404_RS01870 PF00166 Chaperonin 10 Kd subunit H5404_RS01875 PF00118 TCP-1/cpn60 chaperonin family H5404_RS01890 PF01810 LysE type translocator H5404_RS01895 PF03466 LysR substrate binding domain H5404_RS01895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS01910 PF08359 YsiA-like protein, C-terminal region H5404_RS01910 PF00440 Bacterial regulatory proteins, tetR family H5404_RS01920 PF02872 5'-nucleotidase, C-terminal domain H5404_RS01920 PF00149 Calcineurin-like phosphoesterase H5404_RS01925 PF03060 Nitronate monooxygenase H5404_RS01940 PF01625 Peptide methionine sulfoxide reductase H5404_RS01940 PF01641 SelR domain H5404_RS01945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_RS01950 PF00455 DeoR C terminal sensor domain H5404_RS01950 PF08220 DeoR-like helix-turn-helix domain H5404_RS01960 PF06628 Catalase-related immune-responsive H5404_RS01960 PF00199 Catalase H5404_RS01970 PF00857 Isochorismatase family H5404_RS01980 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family H5404_RS01980 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain H5404_RS02000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS02000 PF03466 LysR substrate binding domain H5404_RS02005 PF01389 OmpA-like transmembrane domain H5404_RS02005 PF00691 OmpA family H5404_RS02015 PF06629 MltA-interacting protein MipA H5404_RS02020 PF17185 NlpE C-terminal OB domain H5404_RS02020 PF04170 NlpE N-terminal domain H5404_RS02025 PF02001 Protein of unknown function DUF134 H5404_RS02050 PF14492 Elongation Factor G, domain II H5404_RS02050 PF03764 Elongation factor G, domain IV H5404_RS02050 PF03144 Elongation factor Tu domain 2 H5404_RS02050 PF00009 Elongation factor Tu GTP binding domain H5404_RS02050 PF00679 Elongation factor G C-terminus H5404_RS02055 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain H5404_RS02055 PF13378 Enolase C-terminal domain-like H5404_RS02065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS02065 PF03466 LysR substrate binding domain H5404_RS02075 PF09278 MerR, DNA binding H5404_RS02075 PF00376 MerR family regulatory protein H5404_RS02100 PF13091 PLD-like domain H5404_RS02105 PF13533 Biotin-lipoyl like H5404_RS02110 PF00873 AcrB/AcrD/AcrF family H5404_RS02130 PF00005 ABC transporter H5404_RS02130 PF08402 TOBE domain H5404_RS02155 PF07702 UTRA domain H5404_RS02155 PF00392 Bacterial regulatory proteins, gntR family H5404_RS02160 PF02028 BCCT, betaine/carnitine/choline family transporter H5404_RS02165 PF02836 Glycosyl hydrolases family 2, TIM barrel domain H5404_RS02165 PF00703 Glycosyl hydrolases family 2 H5404_RS02165 PF02837 Glycosyl hydrolases family 2, sugar binding domain H5404_RS02165 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 H5404_RS02170 PF00196 Bacterial regulatory proteins, luxR family H5404_RS02180 PF07694 5TMR of 5TMR-LYT H5404_RS02180 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS02195 PF00873 AcrB/AcrD/AcrF family H5404_RS02200 PF13533 Biotin-lipoyl like H5404_RS02205 PF03466 LysR substrate binding domain H5404_RS02205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS02215 PF13416 Bacterial extracellular solute-binding protein H5404_RS02220 PF00579 tRNA synthetases class I (W and Y) H5404_RS02235 PF00391 PEP-utilising enzyme, mobile domain H5404_RS02235 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain H5404_RS02235 PF02896 PEP-utilising enzyme, TIM barrel domain H5404_RS02240 PF03618 Kinase/pyrophosphorylase H5404_RS02245 PF17763 Glutaminase/Asparaginase C-terminal domain H5404_RS02245 PF00710 Asparaginase, N-terminal H5404_RS02250 PF00709 Adenylosuccinate synthetase H5404_RS02255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS02255 PF03466 LysR substrate binding domain H5404_RS02270 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) H5404_RS02275 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term H5404_RS02275 PF12833 Helix-turn-helix domain H5404_RS02290 PF08240 Alcohol dehydrogenase GroES-like domain H5404_RS02290 PF00107 Zinc-binding dehydrogenase H5404_RS02295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5404_RS02305 PF03466 LysR substrate binding domain H5404_RS02305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS02310 PF03466 LysR substrate binding domain H5404_RS02310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS02320 PF00271 Helicase conserved C-terminal domain H5404_RS02320 PF00270 DEAD/DEAH box helicase H5404_RS02335 PF00535 Glycosyl transferase family 2 H5404_RS02360 PF00155 Aminotransferase class I and II H5404_RS02365 PF01497 Periplasmic binding protein H5404_RS02365 PF12833 Helix-turn-helix domain H5404_RS02395 PF05661 Protein of unknown function (DUF808) H5404_RS02400 PF01979 Amidohydrolase family H5404_RS02405 PF01679 Proteolipid membrane potential modulator H5404_RS02410 PF03473 MOSC domain H5404_RS02410 PF03476 MOSC N-terminal beta barrel domain H5404_RS02410 PF00111 2Fe-2S iron-sulfur cluster binding domain H5404_RS02410 PF03473 MOSC domain H5404_RS02410 PF03476 MOSC N-terminal beta barrel domain H5404_RS02410 PF00111 2Fe-2S iron-sulfur cluster binding domain H5404_RS02415 PF02540 NAD synthase H5404_RS02420 PF01467 Cytidylyltransferase-like H5404_RS02460 PF00005 ABC transporter H5404_RS02465 PF01032 FecCD transport family H5404_RS02475 PF02472 Biopolymer transport protein ExbD/TolR H5404_RS02480 PF01618 MotA/TolQ/ExbB proton channel family H5404_RS02485 PF03544 Gram-negative bacterial TonB protein C-terminal H5404_RS02490 PF04055 Radical SAM superfamily H5404_RS02495 PF06228 Haem utilisation ChuX/HutX H5404_RS02500 PF01243 Pyridoxamine 5'-phosphate oxidase H5404_RS02510 PF01584 CheW-like domain H5404_RS02510 PF00072 Response regulator receiver domain H5404_RS02530 PF02796 Helix-turn-helix domain of resolvase H5404_RS02530 PF00239 Resolvase, N terminal domain H5404_RS02535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS02535 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS02550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS02550 PF03466 LysR substrate binding domain H5404_RS02555 PF07690 Major Facilitator Superfamily H5404_RS02570 PF00682 HMGL-like H5404_RS02570 PF08502 LeuA allosteric (dimerisation) domain H5404_RS02590 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) H5404_RS02595 PF00082 Subtilase family H5404_RS02615 PF00141 Peroxidase H5404_RS02620 PF00210 Ferritin-like domain H5404_RS02625 PF03466 LysR substrate binding domain H5404_RS02625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS02635 PF03466 LysR substrate binding domain H5404_RS02635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS02640 PF00884 Sulfatase H5404_RS02645 PF04055 Radical SAM superfamily H5404_RS02645 PF13186 Iron-sulfur cluster-binding domain H5404_RS02660 PF04151 Bacterial pre-peptidase C-terminal domain H5404_RS02660 PF08453 Peptidase family M9 N-terminal H5404_RS02660 PF01752 Collagenase H5404_RS02670 PF00128 Alpha amylase, catalytic domain H5404_RS02685 PF00999 Sodium/hydrogen exchanger family H5404_RS02685 PF02254 TrkA-N domain H5404_RS02690 PF02525 Flavodoxin-like fold H5404_RS02695 PF00582 Universal stress protein family H5404_RS02700 PF00005 ABC transporter H5404_RS02700 PF12848 ABC transporter H5404_RS02705 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H5404_RS02705 PF00326 Prolyl oligopeptidase family H5404_RS02715 PF13533 Biotin-lipoyl like H5404_RS02720 PF00873 AcrB/AcrD/AcrF family H5404_RS02725 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H5404_RS02735 PF13302 Acetyltransferase (GNAT) domain H5404_RS02745 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS02765 PF00873 AcrB/AcrD/AcrF family H5404_RS02785 PF12838 4Fe-4S dicluster domain H5404_RS02785 PF00384 Molybdopterin oxidoreductase H5404_RS02785 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region H5404_RS02785 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5404_RS02785 PF01568 Molydopterin dinucleotide binding domain H5404_RS02805 PF00005 ABC transporter H5404_RS02815 PF00672 HAMP domain H5404_RS02815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS02820 PF10282 Lactonase, 7-bladed beta-propeller H5404_RS02825 PF02567 Phenazine biosynthesis-like protein H5404_RS02830 PF01161 Phosphatidylethanolamine-binding protein H5404_RS02840 PF01758 Sodium Bile acid symporter family H5404_RS02855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5404_RS02860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5404_RS02860 PF02378 Phosphotransferase system, EIIC H5404_RS02865 PF00107 Zinc-binding dehydrogenase H5404_RS02865 PF08240 Alcohol dehydrogenase GroES-like domain H5404_RS02905 PF01555 DNA methylase H5404_RS03120 PF13401 AAA domain H5404_RS03120 PF09077 Mu B transposition protein, C terminal H5404_RS03155 PF03222 Tryptophan/tyrosine permease family H5404_RS03165 PF02743 Cache domain H5404_RS03165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS03165 PF00672 HAMP domain H5404_RS03170 PF07670 Nucleoside recognition H5404_RS03190 PF08525 Opacity-associated protein A N-terminal motif H5404_RS03190 PF01476 LysM domain H5404_RS03190 PF01551 Peptidase family M23 H5404_RS03200 PF03466 LysR substrate binding domain H5404_RS03200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS03205 PF07690 Major Facilitator Superfamily H5404_RS03215 PF00462 Glutaredoxin H5404_RS03220 PF00892 EamA-like transporter family H5404_RS03235 PF01557 Fumarylacetoacetate (FAA) hydrolase family H5404_RS03250 PF12833 Helix-turn-helix domain H5404_RS03255 PF01810 LysE type translocator H5404_RS03265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H5404_RS03265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H5404_RS03265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H5404_RS03265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H5404_RS03270 PF02790 Cytochrome C oxidase subunit II, transmembrane domain H5404_RS03270 PF00116 Cytochrome C oxidase subunit II, periplasmic domain H5404_RS03275 PF00115 Cytochrome C and Quinol oxidase polypeptide I H5404_RS03280 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 H5404_RS03285 PF00510 Cytochrome c oxidase subunit III H5404_RS03305 PF02628 Cytochrome oxidase assembly protein H5404_RS03310 PF01040 UbiA prenyltransferase family H5404_RS03315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5404_RS03315 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H5404_RS03345 PF00313 'Cold-shock' DNA-binding domain H5404_RS03350 PF03889 Alternative ribosome-rescue factor A H5404_RS03355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS03355 PF08447 PAS fold H5404_RS03355 PF13426 PAS domain H5404_RS03360 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS03375 PF00005 ABC transporter H5404_RS03375 PF02687 FtsX-like permease family H5404_RS03375 PF12704 MacB-like periplasmic core domain H5404_RS03380 PF00005 ABC transporter H5404_RS03380 PF12704 MacB-like periplasmic core domain H5404_RS03380 PF02687 FtsX-like permease family H5404_RS03390 PF17200 Single Cache domain 2 H5404_RS03390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS03390 PF00672 HAMP domain H5404_RS03395 PF00210 Ferritin-like domain H5404_RS03405 PF07995 Glucose / Sorbosone dehydrogenase H5404_RS03410 PF00465 Iron-containing alcohol dehydrogenase H5404_RS03425 PF00892 EamA-like transporter family H5404_RS03450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS03450 PF03466 LysR substrate binding domain H5404_RS03460 PF00501 AMP-binding enzyme H5404_RS03460 PF13193 AMP-binding enzyme C-terminal domain H5404_RS03465 PF00351 Biopterin-dependent aromatic amino acid hydroxylase H5404_RS03470 PF01329 Pterin 4 alpha carbinolamine dehydratase H5404_RS03490 PF12843 Putative quorum-sensing-regulated virulence factor H5404_RS03495 PF00270 DEAD/DEAH box helicase H5404_RS03495 PF00271 Helicase conserved C-terminal domain H5404_RS03500 PF09905 DNA-binding protein VF530 H5404_RS03505 PF00291 Pyridoxal-phosphate dependent enzyme H5404_RS03515 PF01470 Pyroglutamyl peptidase H5404_RS03525 PF02492 CobW/HypB/UreG, nucleotide-binding domain H5404_RS03525 PF07683 Cobalamin synthesis protein cobW C-terminal domain H5404_RS03530 PF00270 DEAD/DEAH box helicase H5404_RS03530 PF00271 Helicase conserved C-terminal domain H5404_RS03550 PF12792 CSS motif domain associated with EAL H5404_RS03550 PF00563 EAL domain H5404_RS03555 PF00005 ABC transporter H5404_RS03560 PF12729 Four helix bundle sensory module for signal transduction H5404_RS03560 PF00672 HAMP domain H5404_RS03560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS03570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS03570 PF03466 LysR substrate binding domain H5404_RS03575 PF00884 Sulfatase H5404_RS03580 PF04055 Radical SAM superfamily H5404_RS03580 PF13186 Iron-sulfur cluster-binding domain H5404_RS03585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS03585 PF03466 LysR substrate binding domain H5404_RS03595 PF01575 MaoC like domain H5404_RS03600 PF12849 PBP superfamily domain H5404_RS03610 PF12833 Helix-turn-helix domain H5404_RS03615 PF08206 Ribonuclease B OB domain H5404_RS03615 PF00575 S1 RNA binding domain H5404_RS03615 PF00773 RNB domain H5404_RS03620 PF00271 Helicase conserved C-terminal domain H5404_RS03620 PF00270 DEAD/DEAH box helicase H5404_RS03620 PF03880 DbpA RNA binding domain H5404_RS03625 PF00563 EAL domain H5404_RS03625 PF13426 PAS domain H5404_RS03625 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS03630 PF00871 Acetokinase family H5404_RS03635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS03635 PF08447 PAS fold H5404_RS03635 PF13426 PAS domain H5404_RS03645 PF10063 Uncharacterized integral membrane protein (DUF2301) H5404_RS03650 PF00682 HMGL-like H5404_RS03655 PF00378 Enoyl-CoA hydratase/isomerase H5404_RS03660 PF01039 Carboxyl transferase domain H5404_RS03665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5404_RS03665 PF02770 Acyl-CoA dehydrogenase, middle domain H5404_RS03665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5404_RS03670 PF00376 MerR family regulatory protein H5404_RS03670 PF09278 MerR, DNA binding H5404_RS03675 PF02803 Thiolase, C-terminal domain H5404_RS03675 PF00108 Thiolase, N-terminal domain H5404_RS03680 PF00171 Aldehyde dehydrogenase family H5404_RS03685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5404_RS03685 PF02770 Acyl-CoA dehydrogenase, middle domain H5404_RS03685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5404_RS03690 PF00378 Enoyl-CoA hydratase/isomerase H5404_RS03695 PF00378 Enoyl-CoA hydratase/isomerase H5404_RS03700 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H5404_RS03700 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H5404_RS03710 PF06481 COX Aromatic Rich Motif H5404_RS03710 PF00116 Cytochrome C oxidase subunit II, periplasmic domain H5404_RS03715 PF00115 Cytochrome C and Quinol oxidase polypeptide I H5404_RS03720 PF00510 Cytochrome c oxidase subunit III H5404_RS03730 PF01040 UbiA prenyltransferase family H5404_RS03735 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5404_RS03740 PF01565 FAD binding domain H5404_RS03740 PF08031 Berberine and berberine like H5404_RS03745 PF00005 ABC transporter H5404_RS03750 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_RS03755 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS03760 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS03770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS03770 PF03466 LysR substrate binding domain H5404_RS03775 PF02798 Glutathione S-transferase, N-terminal domain H5404_RS03775 PF00043 Glutathione S-transferase, C-terminal domain H5404_RS03785 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H5404_RS03785 PF00364 Biotin-requiring enzyme H5404_RS03785 PF02817 e3 binding domain H5404_RS03790 PF02779 Transketolase, pyrimidine binding domain H5404_RS03790 PF02780 Transketolase, C-terminal domain H5404_RS03795 PF00676 Dehydrogenase E1 component H5404_RS03810 PF00012 Hsp70 protein H5404_RS03815 PF04314 Copper chaperone PCu(A)C H5404_RS03835 PF01497 Periplasmic binding protein H5404_RS03840 PF01032 FecCD transport family H5404_RS03845 PF01032 FecCD transport family H5404_RS03850 PF00005 ABC transporter H5404_RS03855 PF13411 MerR HTH family regulatory protein H5404_RS03860 PF12833 Helix-turn-helix domain H5404_RS03865 PF07715 TonB-dependent Receptor Plug Domain H5404_RS03865 PF00593 TonB dependent receptor H5404_RS03895 PF12805 FUSC-like inner membrane protein yccS H5404_RS03900 PF13361 UvrD-like helicase C-terminal domain H5404_RS03900 PF00580 UvrD/REP helicase N-terminal domain H5404_RS03900 PF12462 DNA helicase IV / RNA helicase N terminal H5404_RS03905 PF02142 MGS-like domain H5404_RS03910 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H5404_RS03915 PF01627 Hpt domain H5404_RS03915 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS03915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS03915 PF00072 Response regulator receiver domain H5404_RS03915 PF00672 HAMP domain H5404_RS03930 PF00486 Transcriptional regulatory protein, C terminal H5404_RS03930 PF00072 Response regulator receiver domain H5404_RS03935 PF00884 Sulfatase H5404_RS03935 PF16385 Domain of unknown function H5404_RS03940 PF00884 Sulfatase H5404_RS03950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS03950 PF03466 LysR substrate binding domain H5404_RS03955 PF00884 Sulfatase H5404_RS03960 PF13186 Iron-sulfur cluster-binding domain H5404_RS03960 PF04055 Radical SAM superfamily H5404_RS03965 PF17863 AAA lid domain H5404_RS03965 PF07726 ATPase family associated with various cellular activities (AAA) H5404_RS03995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H5404_RS04000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS04000 PF03466 LysR substrate binding domain H5404_RS04005 PF00781 Diacylglycerol kinase catalytic domain H5404_RS04010 PF04076 Bacterial OB fold (BOF) protein H5404_RS04025 PF13186 Iron-sulfur cluster-binding domain H5404_RS04025 PF04055 Radical SAM superfamily H5404_RS04035 PF08774 VRR-NUC domain H5404_RS04035 PF18081 Fanconi anemia-associated nuclease SAP domain H5404_RS04050 PF01435 Peptidase family M48 H5404_RS04055 PF04011 LemA family H5404_RS04060 PF03606 C4-dicarboxylate anaerobic carrier H5404_RS04070 PF00814 Glycoprotease family H5404_RS04070 PF00583 Acetyltransferase (GNAT) family H5404_RS04080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS04080 PF00072 Response regulator receiver domain H5404_RS04085 PF00155 Aminotransferase class I and II H5404_RS04090 PF01926 50S ribosome-binding GTPase H5404_RS04100 PF04151 Bacterial pre-peptidase C-terminal domain H5404_RS04100 PF01752 Collagenase H5404_RS04100 PF08453 Peptidase family M9 N-terminal H5404_RS04110 PF12833 Helix-turn-helix domain H5404_RS04115 PF03466 LysR substrate binding domain H5404_RS04115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS04135 PF13629 Pilus formation protein N terminal region H5404_RS04135 PF00263 Bacterial type II and III secretion system protein H5404_RS04135 PF04972 BON domain H5404_RS04150 PF00437 Type II/IV secretion system protein H5404_RS04185 PF00691 OmpA family H5404_RS04185 PF05736 OprF membrane domain H5404_RS04195 PF03466 LysR substrate binding domain H5404_RS04195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS04200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS04200 PF03466 LysR substrate binding domain H5404_RS04210 PF09456 RcsC Alpha-Beta-Loop (ABL) H5404_RS04210 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS04210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS04210 PF00072 Response regulator receiver domain H5404_RS04215 PF00563 EAL domain H5404_RS04215 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS04215 PF03707 Bacterial signalling protein N terminal repeat H5404_RS04215 PF13188 PAS domain H5404_RS04220 PF00196 Bacterial regulatory proteins, luxR family H5404_RS04220 PF00072 Response regulator receiver domain H5404_RS04225 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS04235 PF00196 Bacterial regulatory proteins, luxR family H5404_RS04235 PF00072 Response regulator receiver domain H5404_RS04255 PF00072 Response regulator receiver domain H5404_RS04255 PF01584 CheW-like domain H5404_RS04270 PF00892 EamA-like transporter family H5404_RS04280 PF01569 PAP2 superfamily H5404_RS04290 PF01447 Thermolysin metallopeptidase, catalytic domain H5404_RS04290 PF03413 Peptidase propeptide and YPEB domain H5404_RS04290 PF07504 Fungalysin/Thermolysin Propeptide Motif H5404_RS04290 PF04151 Bacterial pre-peptidase C-terminal domain H5404_RS04290 PF02868 Thermolysin metallopeptidase, alpha-helical domain H5404_RS04295 PF00893 Small Multidrug Resistance protein H5404_RS04300 PF00892 EamA-like transporter family H5404_RS04320 PF00171 Aldehyde dehydrogenase family H5404_RS04325 PF00939 Sodium:sulfate symporter transmembrane region H5404_RS04330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS04330 PF00989 PAS fold H5404_RS04330 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain H5404_RS04330 PF17203 Single cache domain 3 H5404_RS04335 PF00072 Response regulator receiver domain H5404_RS04335 PF12431 Transcriptional regulator H5404_RS04345 PF13187 4Fe-4S dicluster domain H5404_RS04345 PF01645 Conserved region in glutamate synthase H5404_RS04350 PF00141 Peroxidase H5404_RS04355 PF09722 Protein of unknown function (DUF2384) H5404_RS04365 PF01757 Acyltransferase family H5404_RS04375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5404_RS04380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_RS04400 PF00571 CBS domain H5404_RS04400 PF01769 Divalent cation transporter H5404_RS04400 PF03448 MgtE intracellular N domain H5404_RS04420 PF01327 Polypeptide deformylase H5404_RS04425 PF00376 MerR family regulatory protein H5404_RS04425 PF09278 MerR, DNA binding H5404_RS04435 PF02253 Phospholipase A1 H5404_RS04455 PF00005 ABC transporter H5404_RS04455 PF00664 ABC transporter transmembrane region H5404_RS04465 PF14579 Helix-hairpin-helix motif H5404_RS04465 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H5404_RS04465 PF02811 PHP domain H5404_RS04465 PF07733 Bacterial DNA polymerase III alpha NTPase domain H5404_RS04465 PF11490 DNA polymerase III polC-type N-terminus II H5404_RS04465 PF00929 Exonuclease H5404_RS04470 PF03466 LysR substrate binding domain H5404_RS04470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS04475 PF01039 Carboxyl transferase domain H5404_RS04475 PF17848 Acetyl-coA carboxylase zinc finger domain H5404_RS04500 PF00350 Dynamin family H5404_RS04505 PF13990 YjcZ-like protein H5404_RS04510 PF01734 Patatin-like phospholipase H5404_RS04515 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) H5404_RS04520 PF00817 impB/mucB/samB family H5404_RS04520 PF11799 impB/mucB/samB family C-terminal domain H5404_RS04520 PF13438 Domain of unknown function (DUF4113) H5404_RS04525 PF00717 Peptidase S24-like H5404_RS04560 PF01554 MatE H5404_RS04565 PF12833 Helix-turn-helix domain H5404_RS04570 PF00155 Aminotransferase class I and II H5404_RS04575 PF18030 RimK PreATP-grasp domain H5404_RS04575 PF08443 RimK-like ATP-grasp domain H5404_RS04585 PF04076 Bacterial OB fold (BOF) protein H5404_RS04590 PF07685 CobB/CobQ-like glutamine amidotransferase domain H5404_RS04600 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS04605 PF00005 ABC transporter H5404_RS04605 PF03459 TOBE domain H5404_RS04615 PF00563 EAL domain H5404_RS04615 PF00360 Phytochrome region H5404_RS04615 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS04615 PF01590 GAF domain H5404_RS04625 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS04640 PF01262 Alanine dehydrogenase/PNT, C-terminal domain H5404_RS04640 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch H5404_RS04640 PF05222 Alanine dehydrogenase/PNT, N-terminal domain H5404_RS04645 PF02233 NAD(P) transhydrogenase beta subunit H5404_RS04655 PF00072 Response regulator receiver domain H5404_RS04655 PF00486 Transcriptional regulatory protein, C terminal H5404_RS04670 PF03701 Uncharacterised protein family (UPF0181) H5404_RS04675 PF00582 Universal stress protein family H5404_RS04685 PF03466 LysR substrate binding domain H5404_RS04685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS04700 PF01253 Translation initiation factor SUI1 H5404_RS04710 PF01820 D-ala D-ala ligase N-terminus H5404_RS04710 PF07478 D-ala D-ala ligase C-terminus H5404_RS04720 PF13380 CoA binding domain H5404_RS04720 PF00583 Acetyltransferase (GNAT) family H5404_RS04720 PF13607 Succinyl-CoA ligase like flavodoxin domain H5404_RS04725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS04725 PF03466 LysR substrate binding domain H5404_RS04730 PF00593 TonB dependent receptor H5404_RS04730 PF07715 TonB-dependent Receptor Plug Domain H5404_RS04735 PF16363 GDP-mannose 4,6 dehydratase H5404_RS04740 PF05231 MASE1 H5404_RS04740 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS04740 PF00563 EAL domain H5404_RS04740 PF08447 PAS fold H5404_RS04740 PF13426 PAS domain H5404_RS04740 PF08448 PAS fold H5404_RS04745 PF03746 LamB/YcsF family H5404_RS04750 PF02682 Carboxyltransferase domain, subdomain C and D H5404_RS04755 PF02626 Carboxyltransferase domain, subdomain A and B H5404_RS04770 PF00005 ABC transporter H5404_RS04775 PF13472 GDSL-like Lipase/Acylhydrolase family H5404_RS04780 PF07055 Enoyl reductase FAD binding domain H5404_RS04780 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase H5404_RS04780 PF12241 Trans-2-enoyl-CoA reductase catalytic region H5404_RS04785 PF13188 PAS domain H5404_RS04785 PF03707 Bacterial signalling protein N terminal repeat H5404_RS04785 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS04785 PF00563 EAL domain H5404_RS04795 PF00226 DnaJ domain H5404_RS04795 PF00684 DnaJ central domain H5404_RS04795 PF01556 DnaJ C terminal domain H5404_RS04820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_RS04820 PF12793 Sugar transport-related sRNA regulator N-term H5404_RS04830 PF03061 Thioesterase superfamily H5404_RS04845 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H5404_RS04850 PF12262 Bacterial virulence factor lipase N-terminal H5404_RS04865 PF03741 Integral membrane protein TerC family H5404_RS04870 PF02872 5'-nucleotidase, C-terminal domain H5404_RS04870 PF00149 Calcineurin-like phosphoesterase H5404_RS04875 PF11398 Protein of unknown function (DUF2813) H5404_RS04880 PF06496 Protein of unknown function (DUF1097) H5404_RS04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS04885 PF03466 LysR substrate binding domain H5404_RS04890 PF01226 Formate/nitrite transporter H5404_RS04895 PF04264 YceI-like domain H5404_RS04900 PF01292 Prokaryotic cytochrome b561 H5404_RS04915 PF12792 CSS motif domain associated with EAL H5404_RS04915 PF00563 EAL domain H5404_RS04920 PF00270 DEAD/DEAH box helicase H5404_RS04920 PF00271 Helicase conserved C-terminal domain H5404_RS04925 PF04336 Acyl carrier protein phosphodiesterase H5404_RS04930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS04935 PF13419 Haloacid dehalogenase-like hydrolase H5404_RS04940 PF11849 Domain of unknown function (DUF3369) H5404_RS04955 PF00294 pfkB family carbohydrate kinase H5404_RS04960 PF01268 Formate--tetrahydrofolate ligase H5404_RS04965 PF00483 Nucleotidyl transferase H5404_RS04970 PF00704 Glycosyl hydrolases family 18 H5404_RS04970 PF06483 Chitinase C H5404_RS04975 PF06719 AraC-type transcriptional regulator N-terminus H5404_RS04975 PF12833 Helix-turn-helix domain H5404_RS04980 PF00465 Iron-containing alcohol dehydrogenase H5404_RS04990 PF14532 Sigma-54 interaction domain H5404_RS04990 PF02954 Bacterial regulatory protein, Fis family H5404_RS04990 PF00072 Response regulator receiver domain H5404_RS04995 PF00672 HAMP domain H5404_RS04995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS04995 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS05005 PF07690 Major Facilitator Superfamily H5404_RS05010 PF02887 Pyruvate kinase, alpha/beta domain H5404_RS05010 PF00224 Pyruvate kinase, barrel domain H5404_RS05015 PF00005 ABC transporter H5404_RS05020 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS05025 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_RS05030 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS05035 PF00563 EAL domain H5404_RS05035 PF00989 PAS fold H5404_RS05035 PF01590 GAF domain H5404_RS05035 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS05050 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H5404_RS05050 PF00356 Bacterial regulatory proteins, lacI family H5404_RS05055 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5404_RS05055 PF00381 PTS HPr component phosphorylation site H5404_RS05060 PF00294 pfkB family carbohydrate kinase H5404_RS05065 PF02378 Phosphotransferase system, EIIC H5404_RS05065 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5404_RS05075 PF00873 AcrB/AcrD/AcrF family H5404_RS05085 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS05095 PF08669 Glycine cleavage T-protein C-terminal barrel domain H5404_RS05095 PF01571 Aminomethyltransferase folate-binding domain H5404_RS05105 PF00464 Serine hydroxymethyltransferase H5404_RS05110 PF01597 Glycine cleavage H-protein H5404_RS05115 PF02347 Glycine cleavage system P-protein H5404_RS05120 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) H5404_RS05135 PF01381 Helix-turn-helix H5404_RS05145 PF07804 HipA-like C-terminal domain H5404_RS05145 PF13657 HipA N-terminal domain H5404_RS05210 PF13597 Anaerobic ribonucleoside-triphosphate reductase H5404_RS05210 PF03477 ATP cone domain H5404_RS05220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS05225 PF00873 AcrB/AcrD/AcrF family H5404_RS05235 PF04143 Sulphur transport H5404_RS05250 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS05250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H5404_RS05255 PF00384 Molybdopterin oxidoreductase H5404_RS05260 PF03466 LysR substrate binding domain H5404_RS05260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS05265 PF02634 FdhD/NarQ family H5404_RS05270 PF07690 Major Facilitator Superfamily H5404_RS05275 PF00072 Response regulator receiver domain H5404_RS05275 PF00196 Bacterial regulatory proteins, luxR family H5404_RS05280 PF05231 MASE1 H5404_RS05280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS05280 PF07730 Histidine kinase H5404_RS05285 PF07690 Major Facilitator Superfamily H5404_RS05290 PF01238 Phosphomannose isomerase type I H5404_RS05310 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H5404_RS05310 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H5404_RS05315 PF00085 Thioredoxin H5404_RS05320 PF07690 Major Facilitator Superfamily H5404_RS05325 PF12833 Helix-turn-helix domain H5404_RS05325 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS05325 PF00072 Response regulator receiver domain H5404_RS05325 PF07495 Y_Y_Y domain H5404_RS05325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS05325 PF07494 Two component regulator propeller H5404_RS05330 PF01554 MatE H5404_RS05335 PF11756 Nitrous oxide-stimulated promoter H5404_RS05350 PF00593 TonB dependent receptor H5404_RS05350 PF07715 TonB-dependent Receptor Plug Domain H5404_RS05360 PF03605 Anaerobic c4-dicarboxylate membrane transporter H5404_RS05375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H5404_RS05375 PF14824 Sirohaem biosynthesis protein central H5404_RS05375 PF10414 Sirohaem synthase dimerisation region H5404_RS05380 PF01226 Formate/nitrite transporter H5404_RS05385 PF13806 Rieske-like [2Fe-2S] domain H5404_RS05390 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS05390 PF18267 Rubredoxin NAD+ reductase C-terminal domain H5404_RS05390 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H5404_RS05390 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H5404_RS05390 PF04324 BFD-like [2Fe-2S] binding domain H5404_RS05395 PF01272 Transcription elongation factor, GreA/GreB, C-term H5404_RS05395 PF14760 Rnk N-terminus H5404_RS05430 PF06965 Na+/H+ antiporter 1 H5404_RS05430 PF13462 Thioredoxin H5404_RS05450 PF09154 Domain of unknown function (DUF1939) H5404_RS05450 PF00128 Alpha amylase, catalytic domain H5404_RS05465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS05465 PF00672 HAMP domain H5404_RS05470 PF01168 Alanine racemase, N-terminal domain H5404_RS05470 PF00842 Alanine racemase, C-terminal domain H5404_RS05485 PF01565 FAD binding domain H5404_RS05485 PF09330 D-lactate dehydrogenase, membrane binding H5404_RS05490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS05490 PF03466 LysR substrate binding domain H5404_RS05505 PF05762 VWA domain containing CoxE-like protein H5404_RS05510 PF17868 AAA lid domain H5404_RS05510 PF12592 Protein of unknown function (DUF3763) H5404_RS05510 PF07728 AAA domain (dynein-related subfamily) H5404_RS05520 PF01212 Beta-eliminating lyase H5404_RS05525 PF00034 Cytochrome c H5404_RS05530 PF03606 C4-dicarboxylate anaerobic carrier H5404_RS05540 PF07690 Major Facilitator Superfamily H5404_RS05550 PF08212 Lipocalin-like domain H5404_RS05570 PF13476 AAA domain H5404_RS05575 PF00149 Calcineurin-like phosphoesterase H5404_RS05575 PF12320 Type 5 capsule protein repressor C-terminal domain H5404_RS05590 PF04717 Type VI secretion system, phage-baseplate injector H5404_RS05590 PF06715 Gp5 C-terminal repeat (3 copies) H5404_RS05600 PF00004 ATPase family associated with various cellular activities (AAA) H5404_RS05600 PF07724 AAA domain (Cdc48 subfamily) H5404_RS05600 PF10431 C-terminal, D2-small domain, of ClpB protein H5404_RS05600 PF17871 AAA lid domain H5404_RS05610 PF05947 Type VI secretion system, TssF H5404_RS05625 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H5404_RS05630 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H5404_RS05635 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 H5404_RS05655 PF06744 Type VI secretion protein IcmF C-terminal H5404_RS05655 PF14331 ImcF-related N-terminal domain H5404_RS05655 PF06761 Intracellular multiplication and human macrophage-killing H5404_RS05660 PF13677 Membrane MotB of proton-channel complex MotA/MotB H5404_RS05660 PF00691 OmpA family H5404_RS05665 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE H5404_RS05680 PF00069 Protein kinase domain H5404_RS05680 PF03793 PASTA domain H5404_RS05705 PF00072 Response regulator receiver domain H5404_RS05705 PF00211 Adenylate and Guanylate cyclase catalytic domain H5404_RS05720 PF00440 Bacterial regulatory proteins, tetR family H5404_RS05720 PF08361 MAATS-type transcriptional repressor, C-terminal region H5404_RS05735 PF04324 BFD-like [2Fe-2S] binding domain H5404_RS05735 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H5404_RS05735 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS05735 PF18267 Rubredoxin NAD+ reductase C-terminal domain H5404_RS05735 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H5404_RS05735 PF13806 Rieske-like [2Fe-2S] domain H5404_RS05740 PF00005 ABC transporter H5404_RS05745 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS05755 PF03861 ANTAR domain H5404_RS05755 PF08376 Nitrate and nitrite sensing H5404_RS05760 PF01738 Dienelactone hydrolase family H5404_RS05765 PF02885 Glycosyl transferase family, helical bundle domain H5404_RS05765 PF00591 Glycosyl transferase family, a/b domain H5404_RS05770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H5404_RS05770 PF14824 Sirohaem biosynthesis protein central H5404_RS05770 PF10414 Sirohaem synthase dimerisation region H5404_RS05775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5404_RS05775 PF01568 Molydopterin dinucleotide binding domain H5404_RS05775 PF00384 Molybdopterin oxidoreductase H5404_RS05785 PF03222 Tryptophan/tyrosine permease family H5404_RS05790 PF00072 Response regulator receiver domain H5404_RS05790 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS05800 PF01483 Proprotein convertase P-domain H5404_RS05800 PF00082 Subtilase family H5404_RS05810 PF00245 Alkaline phosphatase H5404_RS05825 PF00486 Transcriptional regulatory protein, C terminal H5404_RS05825 PF00072 Response regulator receiver domain H5404_RS05845 PF01048 Phosphorylase superfamily H5404_RS05850 PF04973 Nicotinamide mononucleotide transporter H5404_RS05860 PF00356 Bacterial regulatory proteins, lacI family H5404_RS05865 PF00294 pfkB family carbohydrate kinase H5404_RS05870 PF13407 Periplasmic binding protein domain H5404_RS05875 PF02653 Branched-chain amino acid transport system / permease component H5404_RS05880 PF00005 ABC transporter H5404_RS05885 PF05025 RbsD / FucU transport protein family H5404_RS05890 PF00563 EAL domain H5404_RS05890 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS05895 PF01048 Phosphorylase superfamily H5404_RS05935 PF04116 Fatty acid hydroxylase superfamily H5404_RS05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS05950 PF09308 LuxQ, periplasmic H5404_RS05950 PF00072 Response regulator receiver domain H5404_RS05950 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS05955 PF00034 Cytochrome c H5404_RS05955 PF03150 Di-haem cytochrome c peroxidase H5404_RS05960 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS05960 PF13188 PAS domain H5404_RS05960 PF00563 EAL domain H5404_RS05960 PF03707 Bacterial signalling protein N terminal repeat H5404_RS05970 PF16200 C-terminal region of band_7 H5404_RS05970 PF01145 SPFH domain / Band 7 family H5404_RS05980 PF00881 Nitroreductase family H5404_RS05985 PF00005 ABC transporter H5404_RS05985 PF00571 CBS domain H5404_RS05990 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS05995 PF04069 Substrate binding domain of ABC-type glycine betaine transport system H5404_RS06000 PF05199 GMC oxidoreductase H5404_RS06000 PF00732 GMC oxidoreductase H5404_RS06005 PF00171 Aldehyde dehydrogenase family H5404_RS06010 PF13977 BetI-type transcriptional repressor, C-terminal H5404_RS06010 PF00440 Bacterial regulatory proteins, tetR family H5404_RS06015 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS06015 PF17151 Periplasmic sensor domain H5404_RS06025 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H5404_RS06025 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H5404_RS06035 PF00378 Enoyl-CoA hydratase/isomerase H5404_RS06040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5404_RS06040 PF02770 Acyl-CoA dehydrogenase, middle domain H5404_RS06040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5404_RS06045 PF00171 Aldehyde dehydrogenase family H5404_RS06050 PF02803 Thiolase, C-terminal domain H5404_RS06050 PF00108 Thiolase, N-terminal domain H5404_RS06055 PF00376 MerR family regulatory protein H5404_RS06055 PF09278 MerR, DNA binding H5404_RS06060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5404_RS06060 PF02770 Acyl-CoA dehydrogenase, middle domain H5404_RS06060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5404_RS06065 PF01039 Carboxyl transferase domain H5404_RS06070 PF00378 Enoyl-CoA hydratase/isomerase H5404_RS06075 PF00364 Biotin-requiring enzyme H5404_RS06075 PF00289 Biotin carboxylase, N-terminal domain H5404_RS06075 PF02785 Biotin carboxylase C-terminal domain H5404_RS06075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H5404_RS06080 PF00682 HMGL-like H5404_RS06085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS06085 PF01627 Hpt domain H5404_RS06085 PF00072 Response regulator receiver domain H5404_RS06085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H5404_RS06085 PF00672 HAMP domain H5404_RS06085 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS06100 PF00924 Mechanosensitive ion channel H5404_RS06100 PF12795 Mechanosensitive ion channel porin domain H5404_RS06100 PF12794 Mechanosensitive ion channel inner membrane domain 1 H5404_RS06105 PF12464 Maltose acetyltransferase H5404_RS06105 PF14602 Hexapeptide repeat of succinyl-transferase H5404_RS06110 PF00392 Bacterial regulatory proteins, gntR family H5404_RS06110 PF00155 Aminotransferase class I and II H5404_RS06115 PF01654 Cytochrome bd terminal oxidase subunit I H5404_RS06120 PF02322 Cytochrome bd terminal oxidase subunit II H5404_RS06130 PF02567 Phenazine biosynthesis-like protein H5404_RS06135 PF02627 Carboxymuconolactone decarboxylase family H5404_RS06140 PF13411 MerR HTH family regulatory protein H5404_RS06150 PF00034 Cytochrome c H5404_RS06160 PF05724 Thiopurine S-methyltransferase (TPMT) H5404_RS06165 PF00501 AMP-binding enzyme H5404_RS06165 PF14535 AMP-binding enzyme C-terminal domain H5404_RS06170 PF00005 ABC transporter H5404_RS06195 PF12399 Branched-chain amino acid ATP-binding cassette transporter H5404_RS06195 PF00005 ABC transporter H5404_RS06205 PF01012 Electron transfer flavoprotein domain H5404_RS06210 PF01012 Electron transfer flavoprotein domain H5404_RS06210 PF00766 Electron transfer flavoprotein FAD-binding domain H5404_RS06215 PF00501 AMP-binding enzyme H5404_RS06215 PF13193 AMP-binding enzyme C-terminal domain H5404_RS06220 PF00478 IMP dehydrogenase / GMP reductase domain H5404_RS06225 PF01256 Carbohydrate kinase H5404_RS06225 PF03853 YjeF-related protein N-terminus H5404_RS06235 PF00072 Response regulator receiver domain H5404_RS06240 PF00248 Aldo/keto reductase family H5404_RS06255 PF00654 Voltage gated chloride channel H5404_RS06265 PF01566 Natural resistance-associated macrophage protein H5404_RS06270 PF01227 GTP cyclohydrolase I H5404_RS06275 PF03454 MoeA C-terminal region (domain IV) H5404_RS06275 PF03453 MoeA N-terminal region (domain I and II) H5404_RS06275 PF00994 Probable molybdopterin binding domain H5404_RS06280 PF00899 ThiF family H5404_RS06300 PF00581 Rhodanese-like domain H5404_RS06305 PF03707 Bacterial signalling protein N terminal repeat H5404_RS06305 PF00563 EAL domain H5404_RS06305 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS06310 PF08329 Chitinase A, N-terminal domain H5404_RS06310 PF00704 Glycosyl hydrolases family 18 H5404_RS06320 PF00923 Transaldolase/Fructose-6-phosphate aldolase H5404_RS06325 PF02780 Transketolase, C-terminal domain H5404_RS06325 PF00456 Transketolase, thiamine diphosphate binding domain H5404_RS06325 PF02779 Transketolase, pyrimidine binding domain H5404_RS06330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS06330 PF08447 PAS fold H5404_RS06335 PF07690 Major Facilitator Superfamily H5404_RS06340 PF00793 DAHP synthetase I family H5404_RS06345 PF00691 OmpA family H5404_RS06345 PF01389 OmpA-like transmembrane domain H5404_RS06350 PF13419 Haloacid dehalogenase-like hydrolase H5404_RS06355 PF00472 RF-1 domain H5404_RS06360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS06360 PF00672 HAMP domain H5404_RS06360 PF12729 Four helix bundle sensory module for signal transduction H5404_RS06365 PF00873 AcrB/AcrD/AcrF family H5404_RS06370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS06375 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H5404_RS06380 PF01546 Peptidase family M20/M25/M40 H5404_RS06380 PF07687 Peptidase dimerisation domain H5404_RS06395 PF00196 Bacterial regulatory proteins, luxR family H5404_RS06395 PF00072 Response regulator receiver domain H5404_RS06400 PF07730 Histidine kinase H5404_RS06400 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term H5404_RS06400 PF00672 HAMP domain H5404_RS06400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS06405 PF12838 4Fe-4S dicluster domain H5404_RS06405 PF13187 4Fe-4S dicluster domain H5404_RS06415 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5404_RS06415 PF00384 Molybdopterin oxidoreductase H5404_RS06415 PF01568 Molydopterin dinucleotide binding domain H5404_RS06420 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) H5404_RS06425 PF03264 NapC/NirT cytochrome c family, N-terminal region H5404_RS06435 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus H5404_RS06445 PF00108 Thiolase, N-terminal domain H5404_RS06445 PF02803 Thiolase, C-terminal domain H5404_RS06450 PF00106 short chain dehydrogenase H5404_RS06455 PF01810 LysE type translocator H5404_RS06465 PF02355 Protein export membrane protein H5404_RS06465 PF07549 SecD/SecF GG Motif H5404_RS06470 PF02355 Protein export membrane protein H5404_RS06470 PF07549 SecD/SecF GG Motif H5404_RS06470 PF13721 SecD export protein N-terminal TM region H5404_RS06495 PF01037 Lrp/AsnC ligand binding domain H5404_RS06515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS06515 PF00529 HlyD membrane-fusion protein of T1SS H5404_RS06530 PF13407 Periplasmic binding protein domain H5404_RS06535 PF01541 GIY-YIG catalytic domain H5404_RS06540 PF04337 Protein of unknown function, DUF480 H5404_RS06550 PF04363 Protein of unknown function (DUF496) H5404_RS06555 PF01554 MatE H5404_RS06560 PF01408 Oxidoreductase family, NAD-binding Rossmann fold H5404_RS06565 PF01627 Hpt domain H5404_RS06565 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H5404_RS06565 PF00672 HAMP domain H5404_RS06565 PF00072 Response regulator receiver domain H5404_RS06565 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS06565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS06570 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H5404_RS06570 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H5404_RS06585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS06585 PF03466 LysR substrate binding domain H5404_RS06590 PF13404 AsnC-type helix-turn-helix domain H5404_RS06590 PF01037 Lrp/AsnC ligand binding domain H5404_RS06595 PF13520 Amino acid permease H5404_RS06600 PF00392 Bacterial regulatory proteins, gntR family H5404_RS06600 PF00155 Aminotransferase class I and II H5404_RS06610 PF03109 ABC1 family H5404_RS06615 PF00571 CBS domain H5404_RS06615 PF01769 Divalent cation transporter H5404_RS06615 PF03448 MgtE intracellular N domain H5404_RS06620 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin H5404_RS06625 PF07969 Amidohydrolase family H5404_RS06635 PF01966 HD domain H5404_RS06645 PF07690 Major Facilitator Superfamily H5404_RS06655 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase H5404_RS06660 PF00255 Glutathione peroxidase H5404_RS06675 PF01323 DSBA-like thioredoxin domain H5404_RS06690 PF00106 short chain dehydrogenase H5404_RS06695 PF00486 Transcriptional regulatory protein, C terminal H5404_RS06695 PF00072 Response regulator receiver domain H5404_RS06700 PF00672 HAMP domain H5404_RS06700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS06700 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS06710 PF01219 Prokaryotic diacylglycerol kinase H5404_RS06715 PF00884 Sulfatase H5404_RS06715 PF08019 Phosphoethanolamine transferase EptA/EptB H5404_RS06720 PF01408 Oxidoreductase family, NAD-binding Rossmann fold H5404_RS06730 PF07690 Major Facilitator Superfamily H5404_RS06745 PF01047 MarR family H5404_RS06755 PF01734 Patatin-like phospholipase H5404_RS06760 PF02678 Pirin H5404_RS06760 PF05726 Pirin C-terminal cupin domain H5404_RS06765 PF00313 'Cold-shock' DNA-binding domain H5404_RS06780 PF00962 Adenosine/AMP deaminase H5404_RS06785 PF00462 Glutaredoxin H5404_RS06785 PF08534 Redoxin H5404_RS06795 PF07943 Penicillin-binding protein 5, C-terminal domain H5404_RS06795 PF00768 D-alanyl-D-alanine carboxypeptidase H5404_RS06800 PF02798 Glutathione S-transferase, N-terminal domain H5404_RS06805 PF00440 Bacterial regulatory proteins, tetR family H5404_RS06805 PF02909 Tetracyclin repressor-like, C-terminal domain H5404_RS06810 PF01872 RibD C-terminal domain H5404_RS06865 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS06870 PF14785 Maltose transport system permease protein MalF P2 domain H5404_RS06870 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS06875 PF01547 Bacterial extracellular solute-binding protein H5404_RS06880 PF00005 ABC transporter H5404_RS06880 PF08402 TOBE domain H5404_RS06885 PF02397 Bacterial sugar transferase H5404_RS06900 PF13614 AAA domain H5404_RS06900 PF13807 G-rich domain on putative tyrosine kinase H5404_RS06900 PF02706 Chain length determinant protein H5404_RS06910 PF00534 Glycosyl transferases group 1 H5404_RS06910 PF13439 Glycosyltransferase Family 4 H5404_RS06940 PF04266 ASCH domain H5404_RS06945 PF00440 Bacterial regulatory proteins, tetR family H5404_RS06945 PF16925 Tetracyclin repressor-like, C-terminal domain H5404_RS06950 PF16884 N-terminal domain of oxidoreductase H5404_RS06950 PF00107 Zinc-binding dehydrogenase H5404_RS06955 PF13417 Glutathione S-transferase, N-terminal domain H5404_RS06960 PF00199 Catalase H5404_RS06960 PF06628 Catalase-related immune-responsive H5404_RS06965 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H5404_RS06965 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase H5404_RS06975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5404_RS06985 PF12833 Helix-turn-helix domain H5404_RS06990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5404_RS06990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5404_RS06995 PF01238 Phosphomannose isomerase type I H5404_RS07005 PF13419 Haloacid dehalogenase-like hydrolase H5404_RS07010 PF00127 Copper binding proteins, plastocyanin/azurin family H5404_RS07015 PF03707 Bacterial signalling protein N terminal repeat H5404_RS07015 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS07015 PF00563 EAL domain H5404_RS07020 PF02386 Cation transport protein H5404_RS07025 PF02254 TrkA-N domain H5404_RS07025 PF02080 TrkA-C domain H5404_RS07030 PF00072 Response regulator receiver domain H5404_RS07030 PF00486 Transcriptional regulatory protein, C terminal H5404_RS07035 PF02702 Osmosensitive K+ channel His kinase sensor domain H5404_RS07035 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS07035 PF13493 Domain of unknown function (DUF4118) H5404_RS07035 PF02702 Osmosensitive K+ channel His kinase sensor domain H5404_RS07035 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS07035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS07035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS07035 PF13493 Domain of unknown function (DUF4118) H5404_RS07040 PF00664 ABC transporter transmembrane region H5404_RS07040 PF00005 ABC transporter H5404_RS07045 PF07715 TonB-dependent Receptor Plug Domain H5404_RS07045 PF00593 TonB dependent receptor H5404_RS07050 PF00005 ABC transporter H5404_RS07055 PF01497 Periplasmic binding protein H5404_RS07060 PF01032 FecCD transport family H5404_RS07070 PF00691 OmpA family H5404_RS07070 PF01389 OmpA-like transmembrane domain H5404_RS07085 PF00529 HlyD membrane-fusion protein of T1SS H5404_RS07090 PF00664 ABC transporter transmembrane region H5404_RS07090 PF00005 ABC transporter H5404_RS07100 PF00196 Bacterial regulatory proteins, luxR family H5404_RS07105 PF00196 Bacterial regulatory proteins, luxR family H5404_RS07115 PF00672 HAMP domain H5404_RS07115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS07115 PF02743 Cache domain H5404_RS07120 PF17863 AAA lid domain H5404_RS07120 PF07726 ATPase family associated with various cellular activities (AAA) H5404_RS07125 PF01882 Protein of unknown function DUF58 H5404_RS07135 PF13519 von Willebrand factor type A domain H5404_RS07140 PF13519 von Willebrand factor type A domain H5404_RS07140 PF07584 Aerotolerance regulator N-terminal H5404_RS07155 PF00005 ABC transporter H5404_RS07160 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS07165 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS07170 PF12849 PBP superfamily domain H5404_RS07175 PF00672 HAMP domain H5404_RS07175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS07195 PF07715 TonB-dependent Receptor Plug Domain H5404_RS07195 PF00593 TonB dependent receptor H5404_RS07200 PF00326 Prolyl oligopeptidase family H5404_RS07200 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H5404_RS07205 PF00270 DEAD/DEAH box helicase H5404_RS07205 PF00271 Helicase conserved C-terminal domain H5404_RS07215 PF03734 L,D-transpeptidase catalytic domain H5404_RS07215 PF01476 LysM domain H5404_RS07215 PF17969 L,D-transpeptidase C-terminal domain H5404_RS07220 PF00875 DNA photolyase H5404_RS07220 PF03441 FAD binding domain of DNA photolyase H5404_RS07225 PF13411 MerR HTH family regulatory protein H5404_RS07230 PF08349 Protein of unknown function (DUF1722) H5404_RS07235 PF01048 Phosphorylase superfamily H5404_RS07250 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS07255 PF11742 Protein of unknown function (DUF3302) H5404_RS07260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS07260 PF00529 HlyD membrane-fusion protein of T1SS H5404_RS07265 PF07155 ECF-type riboflavin transporter, S component H5404_RS07270 PF00005 ABC transporter H5404_RS07270 PF12558 ATP-binding cassette cobalt transporter H5404_RS07285 PF12801 4Fe-4S binding domain H5404_RS07285 PF13237 4Fe-4S dicluster domain H5404_RS07290 PF12838 4Fe-4S dicluster domain H5404_RS07290 PF12800 4Fe-4S binding domain H5404_RS07295 PF00583 Acetyltransferase (GNAT) family H5404_RS07310 PF07238 PilZ domain H5404_RS07310 PF12945 Flagellar protein YcgR H5404_RS07315 PF00672 HAMP domain H5404_RS07315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS07320 PF05362 Lon protease (S16) C-terminal proteolytic domain H5404_RS07320 PF13654 AAA domain H5404_RS07330 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS07330 PF00005 ABC transporter H5404_RS07335 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain H5404_RS07335 PF00326 Prolyl oligopeptidase family H5404_RS07340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS07340 PF03466 LysR substrate binding domain H5404_RS07345 PF02652 L-lactate permease H5404_RS07350 PF01070 FMN-dependent dehydrogenase H5404_RS07360 PF00924 Mechanosensitive ion channel H5404_RS07365 PF00194 Eukaryotic-type carbonic anhydrase H5404_RS07395 PF00589 Phage integrase family H5404_RS07395 PF12167 Arm DNA-binding domain H5404_RS07415 PF08240 Alcohol dehydrogenase GroES-like domain H5404_RS07415 PF00107 Zinc-binding dehydrogenase H5404_RS07420 PF00155 Aminotransferase class I and II H5404_RS07425 PF00563 EAL domain H5404_RS07425 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS07425 PF03707 Bacterial signalling protein N terminal repeat H5404_RS07430 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_RS07435 PF00266 Aminotransferase class-V H5404_RS07440 PF00080 Copper/zinc superoxide dismutase (SODC) H5404_RS07445 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS07445 PF00072 Response regulator receiver domain H5404_RS07445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS07445 PF13426 PAS domain H5404_RS07445 PF08448 PAS fold H5404_RS07450 PF00072 Response regulator receiver domain H5404_RS07450 PF00486 Transcriptional regulatory protein, C terminal H5404_RS07470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS07470 PF03466 LysR substrate binding domain H5404_RS07475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_RS07510 PF03466 LysR substrate binding domain H5404_RS07510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS07525 PF18269 T3SS EscN ATPase C-terminal domain H5404_RS07525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5404_RS07535 PF14841 FliG middle domain H5404_RS07535 PF14842 FliG N-terminal domain H5404_RS07535 PF01706 FliG C-terminal domain H5404_RS07540 PF08345 Flagellar M-ring protein C-terminal H5404_RS07540 PF01514 Secretory protein of YscJ/FliF family H5404_RS07545 PF02049 Flagellar hook-basal body complex protein FliE H5404_RS07550 PF02954 Bacterial regulatory protein, Fis family H5404_RS07550 PF00072 Response regulator receiver domain H5404_RS07550 PF00158 Sigma-54 interaction domain H5404_RS07565 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H5404_RS07570 PF00813 FliP family H5404_RS07575 PF01313 Bacterial export proteins, family 3 H5404_RS07580 PF01311 Bacterial export proteins, family 1 H5404_RS07585 PF01312 FlhB HrpN YscU SpaS Family H5404_RS07590 PF00771 FHIPEP family H5404_RS07600 PF00700 Bacterial flagellin C-terminal helical region H5404_RS07600 PF00669 Bacterial flagellin N-terminal helical region H5404_RS07610 PF07196 Flagellin hook IN motif H5404_RS07610 PF02465 Flagellar hook-associated protein 2 N-terminus H5404_RS07610 PF07195 Flagellar hook-associated protein 2 C-terminus H5404_RS07615 PF02561 Flagellar protein FliS H5404_RS07630 PF03748 Flagellar basal body-associated protein FliL H5404_RS07635 PF04542 Sigma-70 region 2 H5404_RS07635 PF04545 Sigma-70, region 4 H5404_RS07640 PF01618 MotA/TolQ/ExbB proton channel family H5404_RS07645 PF13677 Membrane MotB of proton-channel complex MotA/MotB H5404_RS07645 PF00691 OmpA family H5404_RS07655 PF08000 Bacterial PH domain H5404_RS07675 PF01228 Glycine radical H5404_RS07675 PF02901 Pyruvate formate lyase-like H5404_RS07680 PF04055 Radical SAM superfamily H5404_RS07685 PF00923 Transaldolase/Fructose-6-phosphate aldolase H5404_RS07695 PF00583 Acetyltransferase (GNAT) family H5404_RS07705 PF07690 Major Facilitator Superfamily H5404_RS07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS07710 PF03466 LysR substrate binding domain H5404_RS07715 PF00892 EamA-like transporter family H5404_RS07735 PF13533 Biotin-lipoyl like H5404_RS07745 PF01594 AI-2E family transporter H5404_RS07750 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H5404_RS07760 PF00970 Oxidoreductase FAD-binding domain H5404_RS07760 PF00175 Oxidoreductase NAD-binding domain H5404_RS07770 PF09905 DNA-binding protein VF530 H5404_RS07775 PF03466 LysR substrate binding domain H5404_RS07775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS07785 PF00881 Nitroreductase family H5404_RS07790 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term H5404_RS07790 PF12833 Helix-turn-helix domain H5404_RS07795 PF00128 Alpha amylase, catalytic domain H5404_RS07795 PF00686 Starch binding domain H5404_RS07800 PF07943 Penicillin-binding protein 5, C-terminal domain H5404_RS07800 PF00768 D-alanyl-D-alanine carboxypeptidase H5404_RS07805 PF00561 alpha/beta hydrolase fold H5404_RS07815 PF00581 Rhodanese-like domain H5404_RS07815 PF17773 UPF0176 acylphosphatase like domain H5404_RS07820 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading H5404_RS07820 PF18416 N-acetylglucosamine binding protein domain 2 H5404_RS07825 PF01734 Patatin-like phospholipase H5404_RS07830 PF01914 MarC family integral membrane protein H5404_RS07835 PF00881 Nitroreductase family H5404_RS07840 PF18412 Outer-membrane lipoprotein Wza C-terminal domain H5404_RS07840 PF10531 SLBB domain H5404_RS07840 PF02563 Polysaccharide biosynthesis/export protein H5404_RS07845 PF01451 Low molecular weight phosphotyrosine protein phosphatase H5404_RS07850 PF13807 G-rich domain on putative tyrosine kinase H5404_RS07850 PF02706 Chain length determinant protein H5404_RS07850 PF13614 AAA domain H5404_RS07860 PF08803 Putative mono-oxygenase ydhR H5404_RS07865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS07865 PF03466 LysR substrate binding domain H5404_RS07875 PF00375 Sodium:dicarboxylate symporter family H5404_RS07880 PF06803 Protein of unknown function (DUF1232) H5404_RS07885 PF01546 Peptidase family M20/M25/M40 H5404_RS07885 PF07687 Peptidase dimerisation domain H5404_RS07890 PF07670 Nucleoside recognition H5404_RS07895 PF07670 Nucleoside recognition H5404_RS07910 PF00128 Alpha amylase, catalytic domain H5404_RS07915 PF00912 Transglycosylase H5404_RS07920 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H5404_RS07920 PF02806 Alpha amylase, C-terminal all-beta domain H5404_RS07920 PF00128 Alpha amylase, catalytic domain H5404_RS07925 PF02446 4-alpha-glucanotransferase H5404_RS07930 PF00343 Carbohydrate phosphorylase H5404_RS07935 PF17874 MalT-like TPR region H5404_RS07935 PF00196 Bacterial regulatory proteins, luxR family H5404_RS07950 PF02630 SCO1/SenC H5404_RS07960 PF02378 Phosphotransferase system, EIIC H5404_RS07960 PF00367 phosphotransferase system, EIIB H5404_RS07965 PF03193 RsgA GTPase H5404_RS07970 PF00375 Sodium:dicarboxylate symporter family H5404_RS07980 PF08543 Phosphomethylpyrimidine kinase H5404_RS07990 PF13520 Amino acid permease H5404_RS07995 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain H5404_RS07995 PF01276 Orn/Lys/Arg decarboxylase, major domain H5404_RS07995 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain H5404_RS08010 PF11852 Domain of unknown function (DUF3372) H5404_RS08010 PF17967 Pullulanase N2 domain H5404_RS08010 PF18494 Pullulanase Ins domain H5404_RS08010 PF03714 Bacterial pullanase-associated domain H5404_RS08010 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H5404_RS08015 PF04231 Endonuclease I H5404_RS08020 PF00128 Alpha amylase, catalytic domain H5404_RS08020 PF02903 Alpha amylase, N-terminal ig-like domain H5404_RS08020 PF16657 Maltogenic Amylase, C-terminal domain H5404_RS08035 PF02264 LamB porin H5404_RS08040 PF00128 Alpha amylase, catalytic domain H5404_RS08040 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) H5404_RS08050 PF00308 Bacterial dnaA protein H5404_RS08050 PF08299 Bacterial dnaA protein helix-turn-helix H5404_RS08050 PF11638 DnaA N-terminal domain H5404_RS08055 PF00712 DNA polymerase III beta subunit, N-terminal domain H5404_RS08055 PF02767 DNA polymerase III beta subunit, central domain H5404_RS08055 PF02768 DNA polymerase III beta subunit, C-terminal domain H5404_RS08060 PF02463 RecF/RecN/SMC N terminal domain H5404_RS08065 PF00986 DNA gyrase B subunit, carboxyl terminus H5404_RS08065 PF01751 Toprim domain H5404_RS08065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS08065 PF00204 DNA gyrase B H5404_RS08065 PF18053 DNA gyrase B subunit insert domain H5404_RS08075 PF00011 Hsp20/alpha crystallin family H5404_RS08080 PF00155 Aminotransferase class I and II H5404_RS08085 PF00128 Alpha amylase, catalytic domain H5404_RS08090 PF02092 Glycyl-tRNA synthetase beta subunit H5404_RS08090 PF05746 DALR anticodon binding domain H5404_RS08095 PF02091 Glycyl-tRNA synthetase alpha subunit H5404_RS08100 PF01169 Uncharacterized protein family UPF0016 H5404_RS08110 PF01206 Sulfurtransferase TusA H5404_RS08120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS08120 PF03466 LysR substrate binding domain H5404_RS08125 PF00107 Zinc-binding dehydrogenase H5404_RS08125 PF08240 Alcohol dehydrogenase GroES-like domain H5404_RS08130 PF02803 Thiolase, C-terminal domain H5404_RS08130 PF00108 Thiolase, N-terminal domain H5404_RS08135 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H5404_RS08135 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H5404_RS08135 PF00378 Enoyl-CoA hydratase/isomerase H5404_RS08140 PF01205 Uncharacterized protein family UPF0029 H5404_RS08140 PF09186 Domain of unknown function (DUF1949) H5404_RS08145 PF02386 Cation transport protein H5404_RS08150 PF12724 Flavodoxin domain H5404_RS08185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS08185 PF03466 LysR substrate binding domain H5404_RS08190 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain H5404_RS08190 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain H5404_RS08195 PF04380 Membrane fusogenic activity H5404_RS08200 PF00873 AcrB/AcrD/AcrF family H5404_RS08205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS08210 PF00440 Bacterial regulatory proteins, tetR family H5404_RS08210 PF16295 Tetracyclin repressor-like, C-terminal domain H5404_RS08215 PF00580 UvrD/REP helicase N-terminal domain H5404_RS08215 PF13361 UvrD-like helicase C-terminal domain H5404_RS08220 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H5404_RS08250 PF13419 Haloacid dehalogenase-like hydrolase H5404_RS08255 PF00005 ABC transporter H5404_RS08255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS08260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_RS08265 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS08270 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS08270 PF12911 N-terminal TM domain of oligopeptide transport permease C H5404_RS08300 PF00069 Protein kinase domain H5404_RS08305 PF00356 Bacterial regulatory proteins, lacI family H5404_RS08305 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H5404_RS08310 PF03466 LysR substrate binding domain H5404_RS08310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS08315 PF00893 Small Multidrug Resistance protein H5404_RS08320 PF00893 Small Multidrug Resistance protein H5404_RS08325 PF00920 Dehydratase family H5404_RS08330 PF01202 Shikimate kinase H5404_RS08335 PF02447 GntP family permease H5404_RS08340 PF01081 KDPG and KHG aldolase H5404_RS08345 PF01048 Phosphorylase superfamily H5404_RS08350 PF03466 LysR substrate binding domain H5404_RS08350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS08355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H5404_RS08355 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS08360 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ H5404_RS08365 PF01432 Peptidase family M3 H5404_RS08370 PF01037 Lrp/AsnC ligand binding domain H5404_RS08375 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS08375 PF08448 PAS fold H5404_RS08375 PF00563 EAL domain H5404_RS08380 PF04445 Putative SAM-dependent methyltransferase H5404_RS08390 PF00892 EamA-like transporter family H5404_RS08395 PF00582 Universal stress protein family H5404_RS08400 PF00210 Ferritin-like domain H5404_RS08405 PF10625 Universal stress protein B (UspB) H5404_RS08415 PF02954 Bacterial regulatory protein, Fis family H5404_RS08415 PF01590 GAF domain H5404_RS08415 PF00158 Sigma-54 interaction domain H5404_RS08420 PF04972 BON domain H5404_RS08470 PF01594 AI-2E family transporter H5404_RS08475 PF00563 EAL domain H5404_RS08475 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS08475 PF03707 Bacterial signalling protein N terminal repeat H5404_RS08485 PF02646 RmuC family H5404_RS08490 PF01209 ubiE/COQ5 methyltransferase family H5404_RS08495 PF02036 SCP-2 sterol transfer family H5404_RS08500 PF03109 ABC1 family H5404_RS08505 PF02416 mttA/Hcf106 family H5404_RS08510 PF02416 mttA/Hcf106 family H5404_RS08515 PF00902 Sec-independent protein translocase protein (TatC) H5404_RS08520 PF01026 TatD related DNase H5404_RS08525 PF00490 Delta-aminolevulinic acid dehydratase H5404_RS08535 PF01367 5'-3' exonuclease, C-terminal SAM fold H5404_RS08535 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain H5404_RS08535 PF00476 DNA polymerase family A H5404_RS08535 PF01612 3'-5' exonuclease H5404_RS08540 PF01926 50S ribosome-binding GTPase H5404_RS08545 PF00034 Cytochrome c H5404_RS08555 PF04220 Der GTPase activator (YihI) H5404_RS08560 PF10675 Protein of unknown function (DUF2489) H5404_RS08565 PF04055 Radical SAM superfamily H5404_RS08565 PF06969 HemN C-terminal domain H5404_RS08570 PF00962 Adenosine/AMP deaminase H5404_RS08575 PF00563 EAL domain H5404_RS08575 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS08575 PF03707 Bacterial signalling protein N terminal repeat H5404_RS08580 PF00158 Sigma-54 interaction domain H5404_RS08580 PF00072 Response regulator receiver domain H5404_RS08580 PF02954 Bacterial regulatory protein, Fis family H5404_RS08585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS08585 PF00989 PAS fold H5404_RS08585 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS08595 PF03951 Glutamine synthetase, beta-Grasp domain H5404_RS08595 PF00120 Glutamine synthetase, catalytic domain H5404_RS08600 PF03144 Elongation factor Tu domain 2 H5404_RS08600 PF00009 Elongation factor Tu GTP binding domain H5404_RS08600 PF00679 Elongation factor G C-terminus H5404_RS08615 PF03631 Virulence factor BrkB H5404_RS08620 PF02580 D-Tyr-tRNA(Tyr) deacylase H5404_RS08625 PF00583 Acetyltransferase (GNAT) family H5404_RS08625 PF09500 Putative thioesterase (yiiD_Cterm) H5404_RS08635 PF01293 Phosphoenolpyruvate carboxykinase H5404_RS08640 PF01430 Hsp33 protein H5404_RS08645 PF01479 S4 domain H5404_RS08650 PF11356 Type II secretion system protein C H5404_RS08655 PF03958 Bacterial type II/III secretion system short domain H5404_RS08655 PF00263 Bacterial type II and III secretion system protein H5404_RS08660 PF00437 Type II/IV secretion system protein H5404_RS08665 PF00482 Type II secretion system (T2SS), protein F H5404_RS08670 PF08334 Type II secretion system (T2SS), protein G H5404_RS08670 PF07963 Prokaryotic N-terminal methylation motif H5404_RS08675 PF12019 Type II transport protein GspH H5404_RS08680 PF02501 Type II secretion system (T2SS), protein I H5404_RS08680 PF07963 Prokaryotic N-terminal methylation motif H5404_RS08685 PF11612 Type II secretion system (T2SS), protein J H5404_RS08685 PF07963 Prokaryotic N-terminal methylation motif H5404_RS08690 PF03934 Type II secretion system (T2SS), protein K H5404_RS08695 PF12693 GspL periplasmic domain H5404_RS08695 PF05134 Type II secretion system (T2SS), protein L H5404_RS08700 PF04612 Type II secretion system (T2SS), protein M H5404_RS08705 PF01203 Type II secretion system (T2SS), protein N H5404_RS08710 PF00459 Inositol monophosphatase family H5404_RS08715 PF00293 NUDIX domain H5404_RS08720 PF01106 NifU-like domain H5404_RS08720 PF01521 Iron-sulphur cluster biosynthesis H5404_RS08725 PF00156 Phosphoribosyl transferase domain H5404_RS08730 PF00561 alpha/beta hydrolase fold H5404_RS08740 PF16921 Tex protein YqgF-like domain H5404_RS08740 PF00575 S1 RNA binding domain H5404_RS08740 PF09371 Tex-like protein N-terminal domain H5404_RS08740 PF17674 HHH domain H5404_RS08750 PF01272 Transcription elongation factor, GreA/GreB, C-term H5404_RS08750 PF03449 Transcription elongation factor, N-terminal H5404_RS08760 PF00072 Response regulator receiver domain H5404_RS08760 PF00486 Transcriptional regulatory protein, C terminal H5404_RS08765 PF00672 HAMP domain H5404_RS08765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS08765 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS08770 PF00860 Permease family H5404_RS08775 PF17191 RecG wedge domain H5404_RS08775 PF00270 DEAD/DEAH box helicase H5404_RS08775 PF00271 Helicase conserved C-terminal domain H5404_RS08780 PF00588 SpoU rRNA Methylase family H5404_RS08780 PF12105 SpoU, rRNA methylase, C-terminal H5404_RS08785 PF13291 ACT domain H5404_RS08785 PF04607 Region found in RelA / SpoT proteins H5404_RS08785 PF02824 TGS domain H5404_RS08790 PF01192 RNA polymerase Rpb6 H5404_RS08795 PF00625 Guanylate kinase H5404_RS08810 PF02472 Biopolymer transport protein ExbD/TolR H5404_RS08815 PF01618 MotA/TolQ/ExbB proton channel family H5404_RS08830 PF07715 TonB-dependent Receptor Plug Domain H5404_RS08830 PF00593 TonB dependent receptor H5404_RS08835 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS08840 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS08840 PF12911 N-terminal TM domain of oligopeptide transport permease C H5404_RS08845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_RS08850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS08850 PF00005 ABC transporter H5404_RS08855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS08855 PF00005 ABC transporter H5404_RS08865 PF08340 Domain of unknown function (DUF1732) H5404_RS08865 PF03755 YicC-like family, N-terminal region H5404_RS08870 PF01138 3' exoribonuclease family, domain 1 H5404_RS08870 PF03725 3' exoribonuclease family, domain 2 H5404_RS08875 PF00156 Phosphoribosyl transferase domain H5404_RS08880 PF03279 Bacterial lipid A biosynthesis acyltransferase H5404_RS08885 PF00440 Bacterial regulatory proteins, tetR family H5404_RS08890 PF02441 Flavoprotein H5404_RS08890 PF04127 DNA / pantothenate metabolism flavoprotein H5404_RS08895 PF17200 Single Cache domain 2 H5404_RS08895 PF00672 HAMP domain H5404_RS08895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS08900 PF04002 RadC-like JAB domain H5404_RS08905 PF00830 Ribosomal L28 family H5404_RS08910 PF00471 Ribosomal protein L33 H5404_RS08920 PF06827 Zinc finger found in FPG and IleRS H5404_RS08920 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain H5404_RS08920 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain H5404_RS08925 PF01467 Cytidylyltransferase-like H5404_RS08930 PF05686 Glycosyl transferase family 90 H5404_RS08935 PF00535 Glycosyl transferase family 2 H5404_RS08940 PF00535 Glycosyl transferase family 2 H5404_RS08945 PF01075 Glycosyltransferase family 9 (heptosyltransferase) H5404_RS08950 PF01219 Prokaryotic diacylglycerol kinase H5404_RS08960 PF16363 GDP-mannose 4,6 dehydratase H5404_RS08965 PF00483 Nucleotidyl transferase H5404_RS08970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family H5404_RS08975 PF00550 Phosphopantetheine attachment site H5404_RS08975 PF00668 Condensation domain H5404_RS08975 PF13193 AMP-binding enzyme C-terminal domain H5404_RS08975 PF00501 AMP-binding enzyme H5404_RS08975 PF00975 Thioesterase domain H5404_RS08985 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H5404_RS08985 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H5404_RS09000 PF00551 Formyl transferase H5404_RS09000 PF02911 Formyl transferase, C-terminal domain H5404_RS09010 PF00535 Glycosyl transferase family 2 H5404_RS09025 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) H5404_RS09030 PF01075 Glycosyltransferase family 9 (heptosyltransferase) H5404_RS09035 PF03279 Bacterial lipid A biosynthesis acyltransferase H5404_RS09040 PF01370 NAD dependent epimerase/dehydratase family H5404_RS09045 PF06082 Exopolysaccharide biosynthesis protein YbjH H5404_RS09080 PF00534 Glycosyl transferases group 1 H5404_RS09080 PF13439 Glycosyltransferase Family 4 H5404_RS09105 PF01757 Acyltransferase family H5404_RS09115 PF02397 Bacterial sugar transferase H5404_RS09120 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain H5404_RS09120 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain H5404_RS09120 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain H5404_RS09125 PF01370 NAD dependent epimerase/dehydratase family H5404_RS09130 PF00483 Nucleotidyl transferase H5404_RS09135 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain H5404_RS09135 PF10996 Beta-Casp domain H5404_RS09135 PF00753 Metallo-beta-lactamase superfamily H5404_RS09140 PF00121 Triosephosphate isomerase H5404_RS09160 PF08220 DeoR-like helix-turn-helix domain H5404_RS09160 PF00455 DeoR C terminal sensor domain H5404_RS09165 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded H5404_RS09170 PF06005 Cell division protein ZapB H5404_RS09175 PF03737 Aldolase/RraA H5404_RS09180 PF01040 UbiA prenyltransferase family H5404_RS09185 PF00004 ATPase family associated with various cellular activities (AAA) H5404_RS09185 PF07724 AAA domain (Cdc48 subfamily) H5404_RS09190 PF00227 Proteasome subunit H5404_RS09200 PF00356 Bacterial regulatory proteins, lacI family H5404_RS09205 PF18319 PriA DNA helicase Cys-rich region (CRR) domain H5404_RS09205 PF00270 DEAD/DEAH box helicase H5404_RS09205 PF18074 Primosomal protein N C-terminal domain H5404_RS09205 PF17764 3′ DNA-binding domain (3′BD) H5404_RS09205 PF00271 Helicase conserved C-terminal domain H5404_RS09210 PF01197 Ribosomal protein L31 H5404_RS09215 PF00338 Ribosomal protein S10p/S20e H5404_RS09220 PF00297 Ribosomal protein L3 H5404_RS09225 PF00573 Ribosomal protein L4/L1 family H5404_RS09230 PF00276 Ribosomal protein L23 H5404_RS09235 PF03947 Ribosomal Proteins L2, C-terminal domain H5404_RS09235 PF00181 Ribosomal Proteins L2, RNA binding domain H5404_RS09240 PF00203 Ribosomal protein S19 H5404_RS09245 PF00237 Ribosomal protein L22p/L17e H5404_RS09250 PF07650 KH domain H5404_RS09250 PF00189 Ribosomal protein S3, C-terminal domain H5404_RS09255 PF00252 Ribosomal protein L16p/L10e H5404_RS09260 PF00831 Ribosomal L29 protein H5404_RS09265 PF00366 Ribosomal protein S17 H5404_RS09270 PF00238 Ribosomal protein L14p/L23e H5404_RS09275 PF00467 KOW motif H5404_RS09275 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 H5404_RS09280 PF00673 ribosomal L5P family C-terminus H5404_RS09280 PF00281 Ribosomal protein L5 H5404_RS09285 PF00253 Ribosomal protein S14p/S29e H5404_RS09290 PF00410 Ribosomal protein S8 H5404_RS09295 PF00347 Ribosomal protein L6 H5404_RS09300 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast H5404_RS09305 PF03719 Ribosomal protein S5, C-terminal domain H5404_RS09305 PF00333 Ribosomal protein S5, N-terminal domain H5404_RS09310 PF00327 Ribosomal protein L30p/L7e H5404_RS09315 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A H5404_RS09320 PF00344 SecY translocase H5404_RS09325 PF00444 Ribosomal protein L36 H5404_RS09330 PF00416 Ribosomal protein S13/S18 H5404_RS09335 PF00411 Ribosomal protein S11 H5404_RS09340 PF01479 S4 domain H5404_RS09340 PF00163 Ribosomal protein S4/S9 N-terminal domain H5404_RS09345 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain H5404_RS09345 PF01000 RNA polymerase Rpb3/RpoA insert domain H5404_RS09345 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain H5404_RS09350 PF01196 Ribosomal protein L17 H5404_RS09360 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H5404_RS09360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5404_RS09370 PF13673 Acetyltransferase (GNAT) domain H5404_RS09375 PF03880 DbpA RNA binding domain H5404_RS09375 PF00271 Helicase conserved C-terminal domain H5404_RS09375 PF00270 DEAD/DEAH box helicase H5404_RS09385 PF02872 5'-nucleotidase, C-terminal domain H5404_RS09385 PF00149 Calcineurin-like phosphoesterase H5404_RS09390 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H5404_RS09390 PF14824 Sirohaem biosynthesis protein central H5404_RS09390 PF10414 Sirohaem synthase dimerisation region H5404_RS09395 PF01507 Phosphoadenosine phosphosulfate reductase family H5404_RS09400 PF00009 Elongation factor Tu GTP binding domain H5404_RS09405 PF02080 TrkA-C domain H5404_RS09405 PF03600 Citrate transporter H5404_RS09430 PF00005 ABC transporter H5404_RS09440 PF10795 Protein of unknown function (DUF2607) H5404_RS09445 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) H5404_RS09450 PF06526 Protein of unknown function (DUF1107) H5404_RS09455 PF01625 Peptide methionine sulfoxide reductase H5404_RS09460 PF17243 POTRA domain TamA domain 1 H5404_RS09460 PF01103 Surface antigen H5404_RS09465 PF04357 TamB, inner membrane protein subunit of TAM complex H5404_RS09470 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like H5404_RS09480 PF00719 Inorganic pyrophosphatase H5404_RS09485 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain H5404_RS09490 PF08245 Mur ligase middle domain H5404_RS09490 PF02875 Mur ligase family, glutamate ligase domain H5404_RS09490 PF01225 Mur ligase family, catalytic domain H5404_RS09495 PF02441 Flavoprotein H5404_RS09505 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS09510 PF00005 ABC transporter H5404_RS09525 PF16868 NMT1-like family H5404_RS09530 PF01316 Arginine repressor, DNA binding domain H5404_RS09530 PF02863 Arginine repressor, C-terminal domain H5404_RS09535 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain H5404_RS09535 PF00056 lactate/malate dehydrogenase, NAD binding domain H5404_RS09545 PF00348 Polyprenyl synthetase H5404_RS09550 PF00829 Ribosomal prokaryotic L21 protein H5404_RS09555 PF01016 Ribosomal L27 protein H5404_RS09560 PF01018 GTP1/OBG H5404_RS09560 PF01926 50S ribosome-binding GTPase H5404_RS09565 PF06738 Putative threonine/serine exporter H5404_RS09570 PF12821 Threonine/Serine exporter, ThrE H5404_RS09575 PF00186 Dihydrofolate reductase H5404_RS09580 PF00149 Calcineurin-like phosphoesterase H5404_RS09585 PF04379 ApaG domain H5404_RS09590 PF00398 Ribosomal RNA adenine dimethylase H5404_RS09595 PF04166 Pyridoxal phosphate biosynthetic protein PdxA H5404_RS09600 PF09312 SurA N-terminal domain H5404_RS09605 PF04453 LPS transport system D H5404_RS09605 PF03968 OstA-like protein H5404_RS09610 PF00226 DnaJ domain H5404_RS09610 PF05099 Tellurite resistance protein TerB H5404_RS09620 PF00694 Aconitase C-terminal domain H5404_RS09625 PF00330 Aconitase family (aconitate hydratase) H5404_RS09630 PF00180 Isocitrate/isopropylmalate dehydrogenase H5404_RS09635 PF08502 LeuA allosteric (dimerisation) domain H5404_RS09635 PF00682 HMGL-like H5404_RS09645 PF01569 PAP2 superfamily H5404_RS09655 PF03466 LysR substrate binding domain H5404_RS09655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS09660 PF00501 AMP-binding enzyme H5404_RS09665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H5404_RS09665 PF00205 Thiamine pyrophosphate enzyme, central domain H5404_RS09665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H5404_RS09670 PF10369 Small subunit of acetolactate synthase H5404_RS09675 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS09685 PF02887 Pyruvate kinase, alpha/beta domain H5404_RS09685 PF00224 Pyruvate kinase, barrel domain H5404_RS09690 PF08220 DeoR-like helix-turn-helix domain H5404_RS09690 PF00455 DeoR C terminal sensor domain H5404_RS09695 PF01380 SIS domain H5404_RS09705 PF00072 Response regulator receiver domain H5404_RS09705 PF00486 Transcriptional regulatory protein, C terminal H5404_RS09710 PF00672 HAMP domain H5404_RS09710 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS09710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS09715 PF00465 Iron-containing alcohol dehydrogenase H5404_RS09720 PF02733 Dak1 domain H5404_RS09725 PF02734 DAK2 domain H5404_RS09730 PF05524 PEP-utilising enzyme, N-terminal H5404_RS09730 PF00391 PEP-utilising enzyme, mobile domain H5404_RS09730 PF02896 PEP-utilising enzyme, TIM barrel domain H5404_RS09735 PF00989 PAS fold H5404_RS09735 PF02954 Bacterial regulatory protein, Fis family H5404_RS09735 PF00158 Sigma-54 interaction domain H5404_RS09740 PF05068 Mannitol repressor H5404_RS09745 PF01232 Mannitol dehydrogenase Rossmann domain H5404_RS09745 PF08125 Mannitol dehydrogenase C-terminal domain H5404_RS09750 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5404_RS09750 PF02378 Phosphotransferase system, EIIC H5404_RS09750 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5404_RS09780 PF03180 NLPA lipoprotein H5404_RS09815 PF13411 MerR HTH family regulatory protein H5404_RS09835 PF01420 Type I restriction modification DNA specificity domain H5404_RS09840 PF02384 N-6 DNA Methylase H5404_RS09840 PF12161 HsdM N-terminal domain H5404_RS09860 PF01555 DNA methylase H5404_RS09865 PF04851 Type III restriction enzyme, res subunit H5404_RS09865 PF00271 Helicase conserved C-terminal domain H5404_RS09865 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) H5404_RS09865 PF08463 EcoEI R protein C-terminal H5404_RS09880 PF00872 Transposase, Mutator family H5404_RS09890 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS09890 PF00529 HlyD membrane-fusion protein of T1SS H5404_RS09920 PF04542 Sigma-70 region 2 H5404_RS09920 PF04546 Sigma-70, non-essential region H5404_RS09920 PF04545 Sigma-70, region 4 H5404_RS09920 PF00140 Sigma-70 factor, region 1.2 H5404_RS09920 PF04539 Sigma-70 region 3 H5404_RS09920 PF03979 Sigma-70 factor, region 1.1 H5404_RS09925 PF08278 DNA primase DnaG DnaB-binding H5404_RS09925 PF01807 CHC2 zinc finger H5404_RS09925 PF08275 DNA primase catalytic core, N-terminal domain H5404_RS09925 PF10410 DnaB-helicase binding domain of primase H5404_RS09930 PF09424 Yqey-like protein H5404_RS09935 PF01165 Ribosomal protein S21 H5404_RS09940 PF00814 Glycoprotease family H5404_RS09945 PF12697 Alpha/beta hydrolase family H5404_RS09950 PF02660 Glycerol-3-phosphate acyltransferase H5404_RS09955 PF02152 Dihydroneopterin aldolase H5404_RS09960 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) H5404_RS09965 PF02673 Bacitracin resistance protein BacA H5404_RS09970 PF12627 Probable RNA and SrmB- binding site of polymerase A H5404_RS09970 PF01966 HD domain H5404_RS09970 PF01743 Poly A polymerase head domain H5404_RS09975 PF13401 AAA domain H5404_RS09975 PF01471 Putative peptidoglycan binding domain H5404_RS09985 PF08239 Bacterial SH3 domain H5404_RS09990 PF01384 Phosphate transporter family H5404_RS09995 PF01865 Protein of unknown function DUF47 H5404_RS10000 PF01928 CYTH domain H5404_RS10010 PF00672 HAMP domain H5404_RS10010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS10015 PF03710 Glutamate-ammonia ligase adenylyltransferase H5404_RS10015 PF08335 GlnD PII-uridylyltransferase H5404_RS10020 PF00294 pfkB family carbohydrate kinase H5404_RS10020 PF01467 Cytidylyltransferase-like H5404_RS10025 PF02321 Outer membrane efflux protein H5404_RS10030 PF00293 NUDIX domain H5404_RS10035 PF06853 Protein of unknown function (DUF1249) H5404_RS10040 PF00149 Calcineurin-like phosphoesterase H5404_RS10045 PF05728 Uncharacterised protein family (UPF0227) H5404_RS10050 PF00204 DNA gyrase B H5404_RS10050 PF00986 DNA gyrase B subunit, carboxyl terminus H5404_RS10050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS10050 PF01751 Toprim domain H5404_RS10055 PF03989 DNA gyrase C-terminal domain, beta-propeller H5404_RS10055 PF00521 DNA gyrase/topoisomerase IV, subunit A H5404_RS10060 PF13180 PDZ domain H5404_RS10065 PF00595 PDZ domain H5404_RS10070 PF06295 Protein of unknown function (DUF1043) H5404_RS10075 PF03969 AFG1-like ATPase H5404_RS10080 PF00572 Ribosomal protein L13 H5404_RS10085 PF00380 Ribosomal protein S9/S16 H5404_RS10090 PF00355 Rieske [2Fe-2S] domain H5404_RS10090 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal H5404_RS10095 PF00033 Cytochrome b/b6/petB H5404_RS10095 PF00032 Cytochrome b(C-terminal)/b6/petD H5404_RS10100 PF02167 Cytochrome C1 family H5404_RS10105 PF02798 Glutathione S-transferase, N-terminal domain H5404_RS10105 PF00043 Glutathione S-transferase, C-terminal domain H5404_RS10110 PF04386 Stringent starvation protein B H5404_RS10115 PF04972 BON domain H5404_RS10120 PF13580 SIS domain H5404_RS10125 PF02021 Uncharacterised protein family UPF0102 H5404_RS10130 PF04348 LppC putative lipoprotein H5404_RS10135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H5404_RS10145 PF01795 MraW methylase family H5404_RS10150 PF04999 Cell division protein FtsL H5404_RS10155 PF00905 Penicillin binding protein transpeptidase domain H5404_RS10155 PF03717 Penicillin-binding Protein dimerisation domain H5404_RS10160 PF01225 Mur ligase family, catalytic domain H5404_RS10160 PF08245 Mur ligase middle domain H5404_RS10160 PF02875 Mur ligase family, glutamate ligase domain H5404_RS10165 PF01225 Mur ligase family, catalytic domain H5404_RS10165 PF08245 Mur ligase middle domain H5404_RS10165 PF02875 Mur ligase family, glutamate ligase domain H5404_RS10170 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 H5404_RS10170 PF00953 Glycosyl transferase family 4 H5404_RS10175 PF08245 Mur ligase middle domain H5404_RS10175 PF02875 Mur ligase family, glutamate ligase domain H5404_RS10180 PF01098 Cell cycle protein H5404_RS10185 PF04101 Glycosyltransferase family 28 C-terminal domain H5404_RS10185 PF03033 Glycosyltransferase family 28 N-terminal domain H5404_RS10190 PF08245 Mur ligase middle domain H5404_RS10190 PF02875 Mur ligase family, glutamate ligase domain H5404_RS10190 PF01225 Mur ligase family, catalytic domain H5404_RS10195 PF03799 Cell division protein FtsQ H5404_RS10195 PF08478 POTRA domain, FtsQ-type H5404_RS10200 PF02491 SHS2 domain inserted in FTSA H5404_RS10205 PF00091 Tubulin/FtsZ family, GTPase domain H5404_RS10205 PF12327 FtsZ family, C-terminal domain H5404_RS10210 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase H5404_RS10220 PF07517 SecA DEAD-like domain H5404_RS10220 PF01043 SecA preprotein cross-linking domain H5404_RS10220 PF02810 SEC-C motif H5404_RS10220 PF07516 SecA Wing and Scaffold domain H5404_RS10225 PF00293 NUDIX domain H5404_RS10230 PF01113 Dihydrodipicolinate reductase, N-terminus H5404_RS10230 PF05173 Dihydrodipicolinate reductase, C-terminus H5404_RS10235 PF00117 Glutamine amidotransferase class-I H5404_RS10235 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain H5404_RS10240 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain H5404_RS10240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H5404_RS10240 PF02142 MGS-like domain H5404_RS10255 PF01925 Sulfite exporter TauE/SafE H5404_RS10260 PF03466 LysR substrate binding domain H5404_RS10260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS10265 PF03458 UPF0126 domain H5404_RS10270 PF01497 Periplasmic binding protein H5404_RS10275 PF17113 Regulatory signalling modulator protein AmpE H5404_RS10275 PF03186 CobD/Cbib protein H5404_RS10280 PF01048 Phosphorylase superfamily H5404_RS10290 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H5404_RS10290 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS10295 PF01493 GXGXG motif H5404_RS10295 PF00310 Glutamine amidotransferases class-II H5404_RS10295 PF04898 Glutamate synthase central domain H5404_RS10295 PF01645 Conserved region in glutamate synthase H5404_RS10300 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H5404_RS10300 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS10305 PF00310 Glutamine amidotransferases class-II H5404_RS10305 PF04898 Glutamate synthase central domain H5404_RS10305 PF01493 GXGXG motif H5404_RS10305 PF01645 Conserved region in glutamate synthase H5404_RS10310 PF04055 Radical SAM superfamily H5404_RS10310 PF16199 Radical_SAM C-terminal domain H5404_RS10315 PF01590 GAF domain H5404_RS10315 PF00360 Phytochrome region H5404_RS10315 PF00563 EAL domain H5404_RS10315 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS10320 PF18415 Histidine kinase receptor ArcB trans-membrane domain H5404_RS10320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS10320 PF01627 Hpt domain H5404_RS10320 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS10320 PF00072 Response regulator receiver domain H5404_RS10320 PF00989 PAS fold H5404_RS10330 PF00072 Response regulator receiver domain H5404_RS10330 PF00486 Transcriptional regulatory protein, C terminal H5404_RS10340 PF03737 Aldolase/RraA H5404_RS10350 PF13840 ACT domain H5404_RS10350 PF00742 Homoserine dehydrogenase H5404_RS10350 PF00696 Amino acid kinase family H5404_RS10350 PF03447 Homoserine dehydrogenase, NAD binding domain H5404_RS10350 PF01842 ACT domain H5404_RS10355 PF00288 GHMP kinases N terminal domain H5404_RS10355 PF08544 GHMP kinases C terminal H5404_RS10360 PF14821 Threonine synthase N terminus H5404_RS10360 PF00291 Pyridoxal-phosphate dependent enzyme H5404_RS10365 PF01228 Glycine radical H5404_RS10370 PF01261 Xylose isomerase-like TIM barrel H5404_RS10375 PF03167 Uracil DNA glycosylase superfamily H5404_RS10390 PF01235 Sodium:alanine symporter family H5404_RS10395 PF03883 Peroxide stress protein YaaA H5404_RS10400 PF00270 DEAD/DEAH box helicase H5404_RS10400 PF00271 Helicase conserved C-terminal domain H5404_RS10405 PF05175 Methyltransferase small domain H5404_RS10410 PF05525 Branched-chain amino acid transport protein H5404_RS10415 PF00258 Flavodoxin H5404_RS10420 PF02899 Phage integrase, N-terminal SAM-like domain H5404_RS10420 PF00589 Phage integrase family H5404_RS10425 PF13098 Thioredoxin-like domain H5404_RS10425 PF10411 Disulfide bond isomerase protein N-terminus H5404_RS10430 PF01368 DHH family H5404_RS10430 PF17768 RecJ OB domain H5404_RS10430 PF02272 DHHA1 domain H5404_RS10440 PF00152 tRNA synthetases class II (D, K and N) H5404_RS10440 PF01336 OB-fold nucleic acid binding domain H5404_RS10445 PF00158 Sigma-54 interaction domain H5404_RS10445 PF00072 Response regulator receiver domain H5404_RS10445 PF02954 Bacterial regulatory protein, Fis family H5404_RS10455 PF00248 Aldo/keto reductase family H5404_RS10465 PF02976 DNA mismatch repair enzyme MutH H5404_RS10470 PF00293 NUDIX domain H5404_RS10475 PF05524 PEP-utilising enzyme, N-terminal H5404_RS10475 PF01590 GAF domain H5404_RS10475 PF02896 PEP-utilising enzyme, TIM barrel domain H5404_RS10475 PF00391 PEP-utilising enzyme, mobile domain H5404_RS10480 PF01925 Sulfite exporter TauE/SafE H5404_RS10485 PF01790 Prolipoprotein diacylglyceryl transferase H5404_RS10495 PF00303 Thymidylate synthase H5404_RS10510 PF01381 Helix-turn-helix H5404_RS10520 PF07804 HipA-like C-terminal domain H5404_RS10520 PF13657 HipA N-terminal domain H5404_RS10545 PF00529 HlyD membrane-fusion protein of T1SS H5404_RS10545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS10555 PF14490 Helix-hairpin-helix containing domain H5404_RS10555 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain H5404_RS10555 PF13538 UvrD-like helicase C-terminal domain H5404_RS10575 PF00589 Phage integrase family H5404_RS10575 PF02899 Phage integrase, N-terminal SAM-like domain H5404_RS10590 PF02690 Na+/Pi-cotransporter H5404_RS10595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS10595 PF03466 LysR substrate binding domain H5404_RS10600 PF01022 Bacterial regulatory protein, arsR family H5404_RS10605 PF01649 Ribosomal protein S20 H5404_RS10610 PF03023 Lipid II flippase MurJ H5404_RS10615 PF01687 Riboflavin kinase H5404_RS10615 PF06574 FAD synthetase H5404_RS10620 PF06827 Zinc finger found in FPG and IleRS H5404_RS10620 PF00133 tRNA synthetases class I (I, L, M and V) H5404_RS10620 PF08264 Anticodon-binding domain of tRNA H5404_RS10625 PF01252 Signal peptidase (SPase) II H5404_RS10630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5404_RS10635 PF02401 LytB protein H5404_RS10640 PF00072 Response regulator receiver domain H5404_RS10640 PF04397 LytTr DNA-binding domain H5404_RS10645 PF06580 Histidine kinase H5404_RS10645 PF07694 5TMR of 5TMR-LYT H5404_RS10650 PF02554 Carbon starvation protein CstA H5404_RS10665 PF13580 SIS domain H5404_RS10670 PF03702 Anhydro-N-acetylmuramic acid kinase H5404_RS10675 PF00933 Glycosyl hydrolase family 3 N terminal domain H5404_RS10680 PF00793 DAHP synthetase I family H5404_RS10685 PF02153 Prephenate dehydrogenase H5404_RS10685 PF01817 Chorismate mutase type II H5404_RS10690 PF04225 Opacity-associated protein A LysM-like domain H5404_RS10690 PF01551 Peptidase family M23 H5404_RS10695 PF07238 PilZ domain H5404_RS10700 PF00005 ABC transporter H5404_RS10700 PF12848 ABC transporter H5404_RS10705 PF01464 Transglycosylase SLT domain H5404_RS10705 PF14718 Soluble lytic murein transglycosylase L domain H5404_RS10710 PF01371 Trp repressor protein H5404_RS10715 PF01931 Protein of unknown function DUF84 H5404_RS10720 PF01817 Chorismate mutase type II H5404_RS10720 PF00800 Prephenate dehydratase H5404_RS10725 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein H5404_RS10730 PF01464 Transglycosylase SLT domain H5404_RS10735 PF13525 Outer membrane lipoprotein H5404_RS10740 PF00849 RNA pseudouridylate synthase H5404_RS10740 PF01479 S4 domain H5404_RS10745 PF02578 Multi-copper polyphenol oxidoreductase laccase H5404_RS10750 PF00004 ATPase family associated with various cellular activities (AAA) H5404_RS10750 PF17871 AAA lid domain H5404_RS10750 PF10431 C-terminal, D2-small domain, of ClpB protein H5404_RS10750 PF02861 Clp amino terminal domain, pathogenicity island component H5404_RS10750 PF07724 AAA domain (Cdc48 subfamily) H5404_RS10795 PF03411 Penicillin-insensitive murein endopeptidase H5404_RS10805 PF00037 4Fe-4S binding domain H5404_RS10810 PF16325 Peptidase family U32 C-terminal domain H5404_RS10810 PF01136 Peptidase family U32 H5404_RS10815 PF04381 Putative exonuclease, RdgC H5404_RS10820 PF00072 Response regulator receiver domain H5404_RS10820 PF00486 Transcriptional regulatory protein, C terminal H5404_RS10825 PF00989 PAS fold H5404_RS10825 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS10825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS10825 PF11808 Phosphate regulon sensor protein PhoR H5404_RS10830 PF12849 PBP superfamily domain H5404_RS10835 PF02541 Ppx/GppA phosphatase family H5404_RS10840 PF17941 Polyphosphate kinase C-terminal domain 1 H5404_RS10840 PF13089 Polyphosphate kinase N-terminal domain H5404_RS10840 PF13090 Polyphosphate kinase C-terminal domain 2 H5404_RS10840 PF02503 Polyphosphate kinase middle domain H5404_RS10845 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS10850 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS10855 PF00005 ABC transporter H5404_RS10860 PF01895 PhoU domain H5404_RS10865 PF03976 Polyphosphate kinase 2 (PPK2) H5404_RS10870 PF03932 CutC family H5404_RS10875 PF10417 C-terminal domain of 1-Cys peroxiredoxin H5404_RS10875 PF00578 AhpC/TSA family H5404_RS10880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS10880 PF03466 LysR substrate binding domain H5404_RS10885 PF01274 Malate synthase H5404_RS10890 PF00463 Isocitrate lyase family H5404_RS10895 PF00571 CBS domain H5404_RS10905 PF02547 Queuosine biosynthesis protein H5404_RS10910 PF01702 Queuine tRNA-ribosyltransferase H5404_RS10915 PF02699 Preprotein translocase subunit H5404_RS10920 PF07549 SecD/SecF GG Motif H5404_RS10920 PF13721 SecD export protein N-terminal TM region H5404_RS10920 PF02355 Protein export membrane protein H5404_RS10925 PF02355 Protein export membrane protein H5404_RS10925 PF07549 SecD/SecF GG Motif H5404_RS10930 PF00459 Inositol monophosphatase family H5404_RS10935 PF00588 SpoU rRNA Methylase family H5404_RS10940 PF02082 Transcriptional regulator H5404_RS10945 PF00266 Aminotransferase class-V H5404_RS10950 PF01592 NifU-like N terminal domain H5404_RS10955 PF01521 Iron-sulphur cluster biosynthesis H5404_RS10960 PF00226 DnaJ domain H5404_RS10960 PF07743 HSCB C-terminal oligomerisation domain H5404_RS10965 PF00012 Hsp70 protein H5404_RS10970 PF00111 2Fe-2S iron-sulfur cluster binding domain H5404_RS10975 PF04384 Iron-sulphur cluster assembly H5404_RS10980 PF12404 Peptidase H5404_RS10980 PF00883 Cytosol aminopeptidase family, catalytic domain H5404_RS10985 PF00334 Nucleoside diphosphate kinase H5404_RS10990 PF04055 Radical SAM superfamily H5404_RS10995 PF13464 Domain of unknown function (DUF4115) H5404_RS11000 PF04551 GcpE protein H5404_RS11005 PF13393 Histidyl-tRNA synthetase H5404_RS11005 PF03129 Anticodon binding domain H5404_RS11010 PF09976 Tetratricopeptide repeat-like domain H5404_RS11015 PF13360 PQQ-like domain H5404_RS11020 PF01926 50S ribosome-binding GTPase H5404_RS11020 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal H5404_RS11035 PF02601 Exonuclease VII, large subunit H5404_RS11035 PF13742 OB-fold nucleic acid binding domain H5404_RS11040 PF00571 CBS domain H5404_RS11040 PF00478 IMP dehydrogenase / GMP reductase domain H5404_RS11045 PF02540 NAD synthase H5404_RS11045 PF00958 GMP synthase C terminal domain H5404_RS11045 PF00117 Glutamine amidotransferase class-I H5404_RS11050 PF03553 Na+/H+ antiporter family H5404_RS11055 PF06483 Chitinase C H5404_RS11055 PF00704 Glycosyl hydrolases family 18 H5404_RS11060 PF01184 GPR1/FUN34/yaaH family H5404_RS11070 PF01235 Sodium:alanine symporter family H5404_RS11075 PF01266 FAD dependent oxidoreductase H5404_RS11080 PF03466 LysR substrate binding domain H5404_RS11080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS11095 PF07969 Amidohydrolase family H5404_RS11100 PF01053 Cys/Met metabolism PLP-dependent enzyme H5404_RS11105 PF00202 Aminotransferase class-III H5404_RS11125 PF00795 Carbon-nitrogen hydrolase H5404_RS11125 PF00583 Acetyltransferase (GNAT) family H5404_RS11130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS11130 PF03466 LysR substrate binding domain H5404_RS11170 PF00145 C-5 cytosine-specific DNA methylase H5404_RS11255 PF00313 'Cold-shock' DNA-binding domain H5404_RS11275 PF00313 'Cold-shock' DNA-binding domain H5404_RS11300 PF00239 Resolvase, N terminal domain H5404_RS11300 PF02796 Helix-turn-helix domain of resolvase H5404_RS11305 PF09019 EcoRII C terminal H5404_RS11305 PF09217 Restriction endonuclease EcoRII, N-terminal H5404_RS11310 PF00145 C-5 cytosine-specific DNA methylase H5404_RS11310 PF18284 DNA methylase N-terminal domain H5404_RS11325 PF13356 Arm DNA-binding domain H5404_RS11325 PF00589 Phage integrase family H5404_RS11335 PF01668 SmpB protein H5404_RS11340 PF03364 Polyketide cyclase / dehydrase and lipid transport H5404_RS11345 PF03658 RnfH family Ubiquitin H5404_RS11350 PF04355 SmpA / OmlA family H5404_RS11355 PF02463 RecF/RecN/SMC N terminal domain H5404_RS11365 PF01513 ATP-NAD kinase H5404_RS11370 PF01025 GrpE H5404_RS11375 PF00375 Sodium:dicarboxylate symporter family H5404_RS11380 PF00012 Hsp70 protein H5404_RS11385 PF00226 DnaJ domain H5404_RS11385 PF01556 DnaJ C terminal domain H5404_RS11385 PF00684 DnaJ central domain H5404_RS11390 PF00114 Pilin (bacterial filament) H5404_RS11390 PF07963 Prokaryotic N-terminal methylation motif H5404_RS11395 PF00114 Pilin (bacterial filament) H5404_RS11395 PF07963 Prokaryotic N-terminal methylation motif H5404_RS11415 PF03806 AbgT putative transporter family H5404_RS11420 PF14437 MafB19-like deaminase H5404_RS11425 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_RS11425 PF01464 Transglycosylase SLT domain H5404_RS11430 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal H5404_RS11430 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain H5404_RS11430 PF02769 AIR synthase related protein, C-terminal domain H5404_RS11455 PF07687 Peptidase dimerisation domain H5404_RS11455 PF01546 Peptidase family M20/M25/M40 H5404_RS11460 PF00860 Permease family H5404_RS11465 PF00156 Phosphoribosyl transferase domain H5404_RS11470 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) H5404_RS11475 PF07417 Sigma factor-binding transcriptional regulator Crl H5404_RS11480 PF01472 PUA domain H5404_RS11480 PF00696 Amino acid kinase family H5404_RS11485 PF00171 Aldehyde dehydrogenase family H5404_RS11490 PF03477 ATP cone domain H5404_RS11495 PF01872 RibD C-terminal domain H5404_RS11495 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H5404_RS11500 PF00677 Lumazine binding domain H5404_RS11505 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase H5404_RS11505 PF00925 GTP cyclohydrolase II H5404_RS11510 PF00885 6,7-dimethyl-8-ribityllumazine synthase H5404_RS11515 PF01029 NusB family H5404_RS11520 PF02769 AIR synthase related protein, C-terminal domain H5404_RS11520 PF00586 AIR synthase related protein, N-terminal domain H5404_RS11525 PF04608 Phosphatidylglycerophosphatase A H5404_RS11530 PF02780 Transketolase, C-terminal domain H5404_RS11530 PF02779 Transketolase, pyrimidine binding domain H5404_RS11530 PF13292 1-deoxy-D-xylulose-5-phosphate synthase H5404_RS11535 PF00348 Polyprenyl synthetase H5404_RS11540 PF02609 Exonuclease VII small subunit H5404_RS11545 PF01618 MotA/TolQ/ExbB proton channel family H5404_RS11550 PF00691 OmpA family H5404_RS11555 PF02926 THUMP domain H5404_RS11555 PF02568 Thiamine biosynthesis protein (ThiI) H5404_RS11560 PF03466 LysR substrate binding domain H5404_RS11560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS11570 PF04241 Protein of unknown function (DUF423) H5404_RS11575 PF01728 FtsJ-like methyltransferase H5404_RS11575 PF18125 RlmM ferredoxin-like domain H5404_RS11580 PF01223 DNA/RNA non-specific endonuclease H5404_RS11585 PF01367 5'-3' exonuclease, C-terminal SAM fold H5404_RS11585 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain H5404_RS11590 PF11892 Domain of unknown function (DUF3412) H5404_RS11590 PF03641 Possible lysine decarboxylase H5404_RS11590 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases H5404_RS11595 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS11605 PF14489 QueF-like protein H5404_RS11605 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term H5404_RS11610 PF07348 Syd protein (SUKH-2) H5404_RS11615 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) H5404_RS11620 PF03180 NLPA lipoprotein H5404_RS11625 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS11630 PF09383 NIL domain H5404_RS11630 PF00005 ABC transporter H5404_RS11640 PF00356 Bacterial regulatory proteins, lacI family H5404_RS11645 PF00367 phosphotransferase system, EIIB H5404_RS11645 PF02378 Phosphotransferase system, EIIC H5404_RS11650 PF16657 Maltogenic Amylase, C-terminal domain H5404_RS11650 PF00128 Alpha amylase, catalytic domain H5404_RS11665 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 H5404_RS11665 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) H5404_RS11670 PF00464 Serine hydroxymethyltransferase H5404_RS11675 PF04055 Radical SAM superfamily H5404_RS11675 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family H5404_RS11680 PF03099 Biotin/lipoate A/B protein ligase family H5404_RS11685 PF04359 Protein of unknown function (DUF493) H5404_RS11690 PF00768 D-alanyl-D-alanine carboxypeptidase H5404_RS11690 PF07943 Penicillin-binding protein 5, C-terminal domain H5404_RS11695 PF03330 Lytic transglycolase H5404_RS11695 PF05036 Sporulation related domain H5404_RS11700 PF01098 Cell cycle protein H5404_RS11705 PF03717 Penicillin-binding Protein dimerisation domain H5404_RS11705 PF00905 Penicillin binding protein transpeptidase domain H5404_RS11710 PF02590 Predicted SPOUT methyltransferase H5404_RS11720 PF06144 DNA polymerase III, delta subunit H5404_RS11720 PF14840 Processivity clamp loader gamma complex DNA pol III C-term H5404_RS11725 PF04390 Lipopolysaccharide-assembly H5404_RS11730 PF00133 tRNA synthetases class I (I, L, M and V) H5404_RS11730 PF13603 Leucyl-tRNA synthetase, Domain 2 H5404_RS11730 PF08264 Anticodon-binding domain of tRNA H5404_RS11735 PF07295 Zinc-ribbon containing domain H5404_RS11740 PF00795 Carbon-nitrogen hydrolase H5404_RS11745 PF03471 Transporter associated domain H5404_RS11745 PF00571 CBS domain H5404_RS11750 PF02130 Uncharacterized protein family UPF0054 H5404_RS11755 PF02562 PhoH-like protein H5404_RS11760 PF00919 Uncharacterized protein family UPF0004 H5404_RS11760 PF04055 Radical SAM superfamily H5404_RS11760 PF01938 TRAM domain H5404_RS11765 PF01494 FAD binding domain H5404_RS11880 PF01926 50S ribosome-binding GTPase H5404_RS11880 PF06071 Protein of unknown function (DUF933) H5404_RS11885 PF01195 Peptidyl-tRNA hydrolase H5404_RS11890 PF14572 Phosphoribosyl synthetase-associated domain H5404_RS11890 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase H5404_RS11895 PF00288 GHMP kinases N terminal domain H5404_RS11895 PF08544 GHMP kinases C terminal H5404_RS11900 PF03550 Outer membrane lipoprotein LolB H5404_RS11905 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain H5404_RS11905 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain H5404_RS11905 PF01488 Shikimate / quinate 5-dehydrogenase H5404_RS11910 PF00472 RF-1 domain H5404_RS11910 PF03462 PCRF domain H5404_RS11915 PF13847 Methyltransferase domain H5404_RS11915 PF17827 PrmC N-terminal domain H5404_RS11920 PF04247 Invasion gene expression up-regulator, SirB H5404_RS11925 PF13369 Transglutaminase-like superfamily H5404_RS11930 PF00793 DAHP synthetase I family H5404_RS11935 PF00149 Calcineurin-like phosphoesterase H5404_RS11935 PF02872 5'-nucleotidase, C-terminal domain H5404_RS11940 PF04073 Aminoacyl-tRNA editing domain H5404_RS11945 PF00849 RNA pseudouridylate synthase H5404_RS11945 PF01479 S4 domain H5404_RS11950 PF01713 Smr domain H5404_RS11970 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain H5404_RS11970 PF02838 Glycosyl hydrolase family 20, domain 2 H5404_RS11970 PF00728 Glycosyl hydrolase family 20, catalytic domain H5404_RS11970 PF03173 Putative carbohydrate binding domain H5404_RS11985 PF00403 Heavy-metal-associated domain H5404_RS11990 PF13609 Gram-negative porin H5404_RS11995 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H5404_RS12000 PF00749 tRNA synthetases class I (E and Q), catalytic domain H5404_RS12005 PF01389 OmpA-like transmembrane domain H5404_RS12005 PF00691 OmpA family H5404_RS12050 PF01584 CheW-like domain H5404_RS12050 PF00072 Response regulator receiver domain H5404_RS12055 PF01739 CheR methyltransferase, SAM binding domain H5404_RS12055 PF03705 CheR methyltransferase, all-alpha domain H5404_RS12060 PF00460 Flagella basal body rod protein H5404_RS12065 PF00460 Flagella basal body rod protein H5404_RS12065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_RS12070 PF03963 Flagellar hook capping protein - N-terminal region H5404_RS12070 PF13860 FlgD Ig-like domain H5404_RS12070 PF13861 FlgD Tudor-like domain H5404_RS12075 PF07559 Flagellar basal body protein FlaE H5404_RS12075 PF00460 Flagella basal body rod protein H5404_RS12075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_RS12080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_RS12080 PF00460 Flagella basal body rod protein H5404_RS12085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_RS12085 PF00460 Flagella basal body rod protein H5404_RS12090 PF02107 Flagellar L-ring protein H5404_RS12095 PF02119 Flagellar P-ring protein H5404_RS12100 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase H5404_RS12100 PF10135 Rod binding protein H5404_RS12105 PF07196 Flagellin hook IN motif H5404_RS12105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal H5404_RS12110 PF00669 Bacterial flagellin N-terminal helical region H5404_RS12115 PF00700 Bacterial flagellin C-terminal helical region H5404_RS12115 PF07196 Flagellin hook IN motif H5404_RS12115 PF00669 Bacterial flagellin N-terminal helical region H5404_RS12120 PF07196 Flagellin hook IN motif H5404_RS12120 PF00700 Bacterial flagellin C-terminal helical region H5404_RS12120 PF00669 Bacterial flagellin N-terminal helical region H5404_RS12125 PF00700 Bacterial flagellin C-terminal helical region H5404_RS12125 PF00669 Bacterial flagellin N-terminal helical region H5404_RS12125 PF07196 Flagellin hook IN motif H5404_RS12130 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 H5404_RS12135 PF02896 PEP-utilising enzyme, TIM barrel domain H5404_RS12135 PF00391 PEP-utilising enzyme, mobile domain H5404_RS12135 PF05524 PEP-utilising enzyme, N-terminal H5404_RS12140 PF00381 PTS HPr component phosphorylation site H5404_RS12145 PF00291 Pyridoxal-phosphate dependent enzyme H5404_RS12155 PF04354 ZipA, C-terminal FtsZ-binding domain H5404_RS12160 PF00533 BRCA1 C Terminus (BRCT) domain H5404_RS12160 PF01653 NAD-dependent DNA ligase adenylation domain H5404_RS12160 PF03119 NAD-dependent DNA ligase C4 zinc finger domain H5404_RS12160 PF12826 Helix-hairpin-helix motif H5404_RS12160 PF03120 NAD-dependent DNA ligase OB-fold domain H5404_RS12165 PF03573 outer membrane porin, OprD family H5404_RS12180 PF01145 SPFH domain / Band 7 family H5404_RS12180 PF16200 C-terminal region of band_7 H5404_RS12185 PF00085 Thioredoxin H5404_RS12190 PF00106 short chain dehydrogenase H5404_RS12195 PF08338 Domain of unknown function (DUF1731) H5404_RS12195 PF01370 NAD dependent epimerase/dehydratase family H5404_RS12200 PF07556 Protein of unknown function (DUF1538) H5404_RS12205 PF07556 Protein of unknown function (DUF1538) H5404_RS12220 PF12850 Calcineurin-like phosphoesterase superfamily domain H5404_RS12235 PF17323 Trans-membrane regulatory protein ToxS H5404_RS12240 PF00486 Transcriptional regulatory protein, C terminal H5404_RS12245 PF00183 Hsp90 protein H5404_RS12245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS12250 PF05191 Adenylate kinase, active site lid H5404_RS12255 PF00762 Ferrochelatase H5404_RS12260 PF00854 POT family H5404_RS12265 PF02357 Transcription termination factor nusG H5404_RS12270 PF00733 Asparagine synthase H5404_RS12270 PF13537 Glutamine amidotransferase domain H5404_RS12275 PF00999 Sodium/hydrogen exchanger family H5404_RS12275 PF02254 TrkA-N domain H5404_RS12280 PF00480 ROK family H5404_RS12280 PF01047 MarR family H5404_RS12285 PF01979 Amidohydrolase family H5404_RS12290 PF02378 Phosphotransferase system, EIIC H5404_RS12290 PF00367 phosphotransferase system, EIIB H5404_RS12295 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain H5404_RS12295 PF00749 tRNA synthetases class I (E and Q), catalytic domain H5404_RS12300 PF01475 Ferric uptake regulator family H5404_RS12310 PF00258 Flavodoxin H5404_RS12320 PF12697 Alpha/beta hydrolase family H5404_RS12325 PF03925 SeqA protein C-terminal domain H5404_RS12325 PF17206 SeqA protein N-terminal domain H5404_RS12330 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H5404_RS12330 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H5404_RS12330 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H5404_RS12330 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H5404_RS12340 PF01784 NIF3 (NGG1p interacting factor 3) H5404_RS12345 PF00285 Citrate synthase, C-terminal domain H5404_RS12350 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit H5404_RS12355 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit H5404_RS12360 PF02910 Fumarate reductase flavoprotein C-term H5404_RS12360 PF00890 FAD binding domain H5404_RS12365 PF13085 2Fe-2S iron-sulfur cluster binding domain H5404_RS12370 PF02779 Transketolase, pyrimidine binding domain H5404_RS12370 PF00676 Dehydrogenase E1 component H5404_RS12370 PF16870 2-oxoglutarate dehydrogenase C-terminal H5404_RS12370 PF16078 2-oxoglutarate dehydrogenase N-terminus H5404_RS12375 PF02817 e3 binding domain H5404_RS12375 PF00364 Biotin-requiring enzyme H5404_RS12375 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H5404_RS12380 PF00549 CoA-ligase H5404_RS12380 PF08442 ATP-grasp domain H5404_RS12385 PF00549 CoA-ligase H5404_RS12385 PF02629 CoA binding domain H5404_RS12390 PF00950 ABC 3 transport family H5404_RS12395 PF00005 ABC transporter H5404_RS12400 PF01297 Zinc-uptake complex component A periplasmic H5404_RS12405 PF02311 AraC-like ligand binding domain H5404_RS12405 PF12833 Helix-turn-helix domain H5404_RS12410 PF04023 FeoA domain H5404_RS12415 PF07670 Nucleoside recognition H5404_RS12415 PF07664 Ferrous iron transport protein B C terminus H5404_RS12415 PF02421 Ferrous iron transport protein B H5404_RS12415 PF17910 FeoB cytosolic helical domain H5404_RS12430 PF00750 tRNA synthetases class I (R) H5404_RS12430 PF05746 DALR anticodon binding domain H5404_RS12430 PF03485 Arginyl tRNA synthetase N terminal domain H5404_RS12435 PF06185 YecM protein H5404_RS12440 PF00551 Formyl transferase H5404_RS12440 PF01842 ACT domain H5404_RS12445 PF13307 Helicase C-terminal domain H5404_RS12445 PF04851 Type III restriction enzyme, res subunit H5404_RS12450 PF00814 Glycoprotease family H5404_RS12465 PF00561 alpha/beta hydrolase fold H5404_RS12470 PF13193 AMP-binding enzyme C-terminal domain H5404_RS12470 PF00501 AMP-binding enzyme H5404_RS12475 PF00570 HRDC domain H5404_RS12475 PF01612 3'-5' exonuclease H5404_RS12480 PF03776 Septum formation topological specificity factor MinE H5404_RS12485 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain H5404_RS12490 PF03775 Septum formation inhibitor MinC, C-terminal domain H5404_RS12490 PF05209 Septum formation inhibitor MinC, N-terminal domain H5404_RS12495 PF05166 YcgL domain H5404_RS12500 PF13406 Transglycosylase SLT domain H5404_RS12505 PF03466 LysR substrate binding domain H5404_RS12505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS12510 PF07670 Nucleoside recognition H5404_RS12510 PF01773 Na+ dependent nucleoside transporter N-terminus H5404_RS12510 PF07662 Na+ dependent nucleoside transporter C-terminus H5404_RS12515 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain H5404_RS12515 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain H5404_RS12530 PF00109 Beta-ketoacyl synthase, N-terminal domain H5404_RS12530 PF02801 Beta-ketoacyl synthase, C-terminal domain H5404_RS12540 PF07977 FabA-like domain H5404_RS12545 PF02801 Beta-ketoacyl synthase, C-terminal domain H5404_RS12545 PF00109 Beta-ketoacyl synthase, N-terminal domain H5404_RS12570 PF00221 Aromatic amino acid lyase H5404_RS12575 PF00535 Glycosyl transferase family 2 H5404_RS12580 PF07977 FabA-like domain H5404_RS12595 PF00550 Phosphopantetheine attachment site H5404_RS12600 PF00550 Phosphopantetheine attachment site H5404_RS12625 PF04820 Tryptophan halogenase H5404_RS12635 PF00571 CBS domain H5404_RS12635 PF03471 Transporter associated domain H5404_RS12635 PF01595 Cyclin M transmembrane N-terminal domain H5404_RS12640 PF00271 Helicase conserved C-terminal domain H5404_RS12640 PF00270 DEAD/DEAH box helicase H5404_RS12645 PF02254 TrkA-N domain H5404_RS12645 PF02080 TrkA-C domain H5404_RS12650 PF02386 Cation transport protein H5404_RS12665 PF02696 Uncharacterized ACR, YdiU/UPF0061 family H5404_RS12670 PF03480 Bacterial extracellular solute-binding protein, family 7 H5404_RS12675 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component H5404_RS12680 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component H5404_RS12690 PF00158 Sigma-54 interaction domain H5404_RS12690 PF02954 Bacterial regulatory protein, Fis family H5404_RS12690 PF00072 Response regulator receiver domain H5404_RS12695 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS12695 PF02743 Cache domain H5404_RS12695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS12705 PF05697 Bacterial trigger factor protein (TF) H5404_RS12705 PF05698 Bacterial trigger factor protein (TF) C-terminus H5404_RS12705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5404_RS12710 PF00574 Clp protease H5404_RS12715 PF06689 ClpX C4-type zinc finger H5404_RS12715 PF07724 AAA domain (Cdc48 subfamily) H5404_RS12715 PF10431 C-terminal, D2-small domain, of ClpB protein H5404_RS12720 PF05362 Lon protease (S16) C-terminal proteolytic domain H5404_RS12720 PF02190 ATP-dependent protease La (LON) substrate-binding domain H5404_RS12720 PF00004 ATPase family associated with various cellular activities (AAA) H5404_RS12725 PF00216 Bacterial DNA-binding protein H5404_RS12730 PF13145 PPIC-type PPIASE domain H5404_RS12750 PF01966 HD domain H5404_RS12750 PF13286 Phosphohydrolase-associated domain H5404_RS12760 PF00155 Aminotransferase class I and II H5404_RS12765 PF00425 chorismate binding enzyme H5404_RS12770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H5404_RS12770 PF16582 Middle domain of thiamine pyrophosphate H5404_RS12770 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H5404_RS12775 PF12697 Alpha/beta hydrolase family H5404_RS12780 PF00378 Enoyl-CoA hydratase/isomerase H5404_RS12785 PF13378 Enolase C-terminal domain-like H5404_RS12790 PF00501 AMP-binding enzyme H5404_RS12790 PF13193 AMP-binding enzyme C-terminal domain H5404_RS12800 PF03601 Conserved hypothetical protein 698 H5404_RS12805 PF07690 Major Facilitator Superfamily H5404_RS12850 PF13533 Biotin-lipoyl like H5404_RS12855 PF00873 AcrB/AcrD/AcrF family H5404_RS12875 PF00291 Pyridoxal-phosphate dependent enzyme H5404_RS12880 PF13404 AsnC-type helix-turn-helix domain H5404_RS12880 PF01037 Lrp/AsnC ligand binding domain H5404_RS12895 PF09619 Type III secretion system lipoprotein chaperone (YscW) H5404_RS12900 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain H5404_RS12910 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS12910 PF17152 Periplasmic sensor domain H5404_RS12920 PF00588 SpoU rRNA Methylase family H5404_RS12920 PF08032 RNA 2'-O ribose methyltransferase substrate binding H5404_RS12925 PF00037 4Fe-4S binding domain H5404_RS12925 PF11953 Domain of unknown function (DUF3470) H5404_RS12935 PF00478 IMP dehydrogenase / GMP reductase domain H5404_RS12935 PF00571 CBS domain H5404_RS12940 PF00403 Heavy-metal-associated domain H5404_RS12945 PF01048 Phosphorylase superfamily H5404_RS12955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS12955 PF00672 HAMP domain H5404_RS12960 PF01230 HIT domain H5404_RS12975 PF08139 Prokaryotic membrane lipoprotein lipid attachment site H5404_RS12975 PF13036 Peptidoglycan-synthase activator LpoB H5404_RS12985 PF05728 Uncharacterised protein family (UPF0227) H5404_RS12990 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS13005 PF00270 DEAD/DEAH box helicase H5404_RS13005 PF02559 CarD-like/TRCF domain H5404_RS13005 PF00271 Helicase conserved C-terminal domain H5404_RS13005 PF03461 TRCF domain H5404_RS13005 PF17757 UvrB interaction domain H5404_RS13015 PF12704 MacB-like periplasmic core domain H5404_RS13015 PF02687 FtsX-like permease family H5404_RS13020 PF00005 ABC transporter H5404_RS13025 PF02687 FtsX-like permease family H5404_RS13025 PF12704 MacB-like periplasmic core domain H5404_RS13035 PF00753 Metallo-beta-lactamase superfamily H5404_RS13035 PF13567 Domain of unknown function (DUF4131) H5404_RS13035 PF03772 Competence protein H5404_RS13040 PF00005 ABC transporter H5404_RS13040 PF00664 ABC transporter transmembrane region H5404_RS13045 PF02606 Tetraacyldisaccharide-1-P 4'-kinase H5404_RS13050 PF03966 Trm112p-like protein H5404_RS13055 PF02348 Cytidylyltransferase H5404_RS13060 PF04293 SpoVR like protein H5404_RS13065 PF04285 Protein of unknown function (DUF444) H5404_RS13070 PF08298 PrkA AAA domain H5404_RS13070 PF06798 PrkA serine protein kinase C-terminal domain H5404_RS13075 PF03887 YfbU domain H5404_RS13085 PF04055 Radical SAM superfamily H5404_RS13095 PF02901 Pyruvate formate lyase-like H5404_RS13095 PF01228 Glycine radical H5404_RS13110 PF00005 ABC transporter H5404_RS13115 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_RS13120 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS13125 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS13135 PF03372 Endonuclease/Exonuclease/phosphatase family H5404_RS13140 PF10689 Protein of unknown function (DUF2496) H5404_RS13145 PF07445 Primosomal replication protein priC H5404_RS13150 PF01925 Sulfite exporter TauE/SafE H5404_RS13155 PF06733 DEAD_2 H5404_RS13155 PF13307 Helicase C-terminal domain H5404_RS13165 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) H5404_RS13170 PF00849 RNA pseudouridylate synthase H5404_RS13175 PF03971 Monomeric isocitrate dehydrogenase H5404_RS13180 PF00313 'Cold-shock' DNA-binding domain H5404_RS13185 PF02617 ATP-dependent Clp protease adaptor protein ClpS H5404_RS13190 PF00004 ATPase family associated with various cellular activities (AAA) H5404_RS13190 PF17871 AAA lid domain H5404_RS13190 PF02861 Clp amino terminal domain, pathogenicity island component H5404_RS13190 PF10431 C-terminal, D2-small domain, of ClpB protein H5404_RS13190 PF07724 AAA domain (Cdc48 subfamily) H5404_RS13200 PF01176 Translation initiation factor 1A / IF-1 H5404_RS13205 PF04377 Arginine-tRNA-protein transferase, C terminus H5404_RS13205 PF04376 Arginine-tRNA-protein transferase, N terminus H5404_RS13210 PF03588 Leucyl/phenylalanyl-tRNA protein transferase H5404_RS13220 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) H5404_RS13225 PF10692 Protein of unknown function (DUF2498) H5404_RS13230 PF01396 Topoisomerase DNA binding C4 zinc finger H5404_RS13230 PF01751 Toprim domain H5404_RS13230 PF08272 Topoisomerase I zinc-ribbon-like H5404_RS13230 PF01131 DNA topoisomerase H5404_RS13235 PF00483 Nucleotidyl transferase H5404_RS13240 PF00534 Glycosyl transferases group 1 H5404_RS13240 PF08323 Starch synthase catalytic domain H5404_RS13260 PF04994 TfoX C-terminal domain H5404_RS13260 PF04993 TfoX N-terminal domain H5404_RS13265 PF00356 Bacterial regulatory proteins, lacI family H5404_RS13270 PF02613 Nitrate reductase delta subunit H5404_RS13275 PF00486 Transcriptional regulatory protein, C terminal H5404_RS13275 PF00072 Response regulator receiver domain H5404_RS13280 PF02698 DUF218 domain H5404_RS13285 PF13847 Methyltransferase domain H5404_RS13290 PF17192 MukF middle domain H5404_RS13290 PF17193 MukF C-terminal domain H5404_RS13290 PF03882 MukF winged-helix domain H5404_RS13295 PF04288 MukE-like family H5404_RS13300 PF04310 MukB N-terminal H5404_RS13300 PF16330 MukB hinge domain H5404_RS13310 PF18030 RimK PreATP-grasp domain H5404_RS13310 PF08443 RimK-like ATP-grasp domain H5404_RS13320 PF08443 RimK-like ATP-grasp domain H5404_RS13320 PF18030 RimK PreATP-grasp domain H5404_RS13325 PF08003 Protein of unknown function (DUF1698) H5404_RS13330 PF13649 Methyltransferase domain H5404_RS13335 PF01904 Protein of unknown function DUF72 H5404_RS13340 PF01336 OB-fold nucleic acid binding domain H5404_RS13340 PF00152 tRNA synthetases class II (D, K and N) H5404_RS13340 PF02938 GAD domain H5404_RS13345 PF02075 Crossover junction endodeoxyribonuclease RuvC H5404_RS13350 PF00672 HAMP domain H5404_RS13350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS13350 PF02203 Tar ligand binding domain homologue H5404_RS13355 PF07499 RuvA, C-terminal domain H5404_RS13355 PF01330 RuvA N terminal domain H5404_RS13360 PF05491 RuvB C-terminal winged helix domain H5404_RS13360 PF05496 Holliday junction DNA helicase RuvB P-loop domain H5404_RS13360 PF17864 RuvB AAA lid domain H5404_RS13365 PF01654 Cytochrome bd terminal oxidase subunit I H5404_RS13370 PF02322 Cytochrome bd terminal oxidase subunit II H5404_RS13375 PF08173 Membrane bound YbgT-like protein H5404_RS13385 PF03061 Thioesterase superfamily H5404_RS13390 PF01618 MotA/TolQ/ExbB proton channel family H5404_RS13395 PF02472 Biopolymer transport protein ExbD/TolR H5404_RS13405 PF07676 WD40-like Beta Propeller Repeat H5404_RS13405 PF04052 TolB amino-terminal domain H5404_RS13410 PF00691 OmpA family H5404_RS13415 PF16331 TolA binding protein trimerisation H5404_RS13415 PF13174 Tetratricopeptide repeat H5404_RS13420 PF02445 Quinolinate synthetase A protein H5404_RS13430 PF03994 Domain of Unknown Function (DUF350) H5404_RS13440 PF03738 Glutathionylspermidine synthase preATP-grasp H5404_RS13450 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS13450 PF09308 LuxQ, periplasmic H5404_RS13450 PF00072 Response regulator receiver domain H5404_RS13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS13455 PF06610 L-alanine exporter H5404_RS13465 PF00589 Phage integrase family H5404_RS13465 PF13356 Arm DNA-binding domain H5404_RS13500 PF00075 RNase H H5404_RS13515 PF04002 RadC-like JAB domain H5404_RS13545 PF01420 Type I restriction modification DNA specificity domain H5404_RS13560 PF18766 SWI2/SNF2 ATPase H5404_RS13560 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) H5404_RS13560 PF11867 Domain of unknown function (DUF3387) H5404_RS13580 PF00176 SNF2 family N-terminal domain H5404_RS13580 PF12419 SNF2 Helicase protein H5404_RS13580 PF00271 Helicase conserved C-terminal domain H5404_RS13585 PF12729 Four helix bundle sensory module for signal transduction H5404_RS13585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS13585 PF00672 HAMP domain H5404_RS13590 PF00529 HlyD membrane-fusion protein of T1SS H5404_RS13590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS13595 PF00873 AcrB/AcrD/AcrF family H5404_RS13610 PF00579 tRNA synthetases class I (W and Y) H5404_RS13620 PF03372 Endonuclease/Exonuclease/phosphatase family H5404_RS13625 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) H5404_RS13635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS13635 PF03466 LysR substrate binding domain H5404_RS13645 PF05222 Alanine dehydrogenase/PNT, N-terminal domain H5404_RS13645 PF01262 Alanine dehydrogenase/PNT, C-terminal domain H5404_RS13650 PF01037 Lrp/AsnC ligand binding domain H5404_RS13655 PF01580 FtsK/SpoIIIE family H5404_RS13655 PF09397 Ftsk gamma domain H5404_RS13655 PF17854 FtsK alpha domain H5404_RS13655 PF13491 4TM region of DNA translocase FtsK/SpoIIIE H5404_RS13660 PF03548 Outer membrane lipoprotein carrier protein LolA H5404_RS13665 PF00004 ATPase family associated with various cellular activities (AAA) H5404_RS13665 PF16193 AAA C-terminal domain H5404_RS13665 PF12002 MgsA AAA+ ATPase C terminal H5404_RS13670 PF02403 Seryl-tRNA synthetase N-terminal domain H5404_RS13670 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H5404_RS13685 PF01258 Prokaryotic dksA/traR C4-type zinc finger H5404_RS13690 PF00202 Aminotransferase class-III H5404_RS13695 PF04055 Radical SAM superfamily H5404_RS13695 PF06968 Biotin and Thiamin Synthesis associated domain H5404_RS13700 PF00155 Aminotransferase class I and II H5404_RS13705 PF08241 Methyltransferase domain H5404_RS13720 PF01435 Peptidase family M48 H5404_RS13730 PF00106 short chain dehydrogenase H5404_RS13765 PF08328 Adenylosuccinate lyase C-terminal H5404_RS13765 PF00206 Lyase H5404_RS13770 PF04356 Protein of unknown function (DUF489) H5404_RS13785 PF00294 pfkB family carbohydrate kinase H5404_RS13790 PF00816 H-NS histone family H5404_RS13795 PF03553 Na+/H+ antiporter family H5404_RS13805 PF00072 Response regulator receiver domain H5404_RS13805 PF00158 Sigma-54 interaction domain H5404_RS13805 PF02954 Bacterial regulatory protein, Fis family H5404_RS13810 PF01634 ATP phosphoribosyltransferase H5404_RS13810 PF08029 HisG, C-terminal domain H5404_RS13815 PF00815 Histidinol dehydrogenase H5404_RS13820 PF00155 Aminotransferase class I and II H5404_RS13825 PF00475 Imidazoleglycerol-phosphate dehydratase H5404_RS13825 PF08645 Polynucleotide kinase 3 phosphatase H5404_RS13830 PF00117 Glutamine amidotransferase class-I H5404_RS13835 PF00977 Histidine biosynthesis protein H5404_RS13840 PF00977 Histidine biosynthesis protein H5404_RS13845 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase H5404_RS13845 PF01502 Phosphoribosyl-AMP cyclohydrolase H5404_RS13850 PF02810 SEC-C motif H5404_RS13855 PF00563 EAL domain H5404_RS13855 PF08668 HDOD domain H5404_RS13860 PF00149 Calcineurin-like phosphoesterase H5404_RS13865 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H5404_RS13870 PF01406 tRNA synthetases class I (C) catalytic domain H5404_RS13870 PF09190 DALR domain H5404_RS13875 PF00265 Thymidine kinase H5404_RS13880 PF02698 DUF218 domain H5404_RS13905 PF01226 Formate/nitrite transporter H5404_RS13915 PF03649 Uncharacterised protein family (UPF0014) H5404_RS13920 PF06796 Periplasmic nitrate reductase protein NapE H5404_RS13925 PF03264 NapC/NirT cytochrome c family, N-terminal region H5404_RS13930 PF18364 Molybdopterin oxidoreductase N-terminal domain H5404_RS13930 PF01568 Molydopterin dinucleotide binding domain H5404_RS13930 PF00384 Molybdopterin oxidoreductase H5404_RS13935 PF16875 Glycosyl hydrolase family 36 N-terminal domain H5404_RS13935 PF16874 Glycosyl hydrolase family 36 C-terminal domain H5404_RS13945 PF01368 DHH family H5404_RS13945 PF02833 DHHA2 domain H5404_RS13955 PF00005 ABC transporter H5404_RS13960 PF00005 ABC transporter H5404_RS13960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS13965 PF12911 N-terminal TM domain of oligopeptide transport permease C H5404_RS13965 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS13970 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS13975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_RS13980 PF00158 Sigma-54 interaction domain H5404_RS13980 PF02954 Bacterial regulatory protein, Fis family H5404_RS13985 PF04012 PspA/IM30 family H5404_RS13990 PF06667 Phage shock protein B H5404_RS13995 PF04024 PspC domain H5404_RS14000 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS14005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS14010 PF00873 AcrB/AcrD/AcrF family H5404_RS14015 PF03352 Methyladenine glycosylase H5404_RS14020 PF03280 Proteobacterial lipase chaperone protein H5404_RS14025 PF00561 alpha/beta hydrolase fold H5404_RS14030 PF01053 Cys/Met metabolism PLP-dependent enzyme H5404_RS14035 PF13091 PLD-like domain H5404_RS14035 PF13396 Phospholipase_D-nuclease N-terminal H5404_RS14040 PF00209 Sodium:neurotransmitter symporter family H5404_RS14045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS14045 PF00672 HAMP domain H5404_RS14045 PF12729 Four helix bundle sensory module for signal transduction H5404_RS14050 PF00849 RNA pseudouridylate synthase H5404_RS14060 PF00175 Oxidoreductase NAD-binding domain H5404_RS14060 PF00111 2Fe-2S iron-sulfur cluster binding domain H5404_RS14060 PF00970 Oxidoreductase FAD-binding domain H5404_RS14065 PF03063 Prismane/CO dehydrogenase family H5404_RS14070 PF01590 GAF domain H5404_RS14070 PF00158 Sigma-54 interaction domain H5404_RS14080 PF01066 CDP-alcohol phosphatidyltransferase H5404_RS14085 PF00005 ABC transporter H5404_RS14090 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS14095 PF13416 Bacterial extracellular solute-binding protein H5404_RS14100 PF09335 SNARE associated Golgi protein H5404_RS14110 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster H5404_RS14110 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS14120 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS14120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS14125 PF00196 Bacterial regulatory proteins, luxR family H5404_RS14125 PF00072 Response regulator receiver domain H5404_RS14135 PF06945 Protein of unknown function (DUF1289) H5404_RS14145 PF02872 5'-nucleotidase, C-terminal domain H5404_RS14145 PF00149 Calcineurin-like phosphoesterase H5404_RS14160 PF01386 Ribosomal L25p family H5404_RS14165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS14170 PF00072 Response regulator receiver domain H5404_RS14170 PF00486 Transcriptional regulatory protein, C terminal H5404_RS14180 PF00271 Helicase conserved C-terminal domain H5404_RS14180 PF04851 Type III restriction enzyme, res subunit H5404_RS14185 PF01479 S4 domain H5404_RS14185 PF00849 RNA pseudouridylate synthase H5404_RS14190 PF07690 Major Facilitator Superfamily H5404_RS14205 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) H5404_RS14220 PF03264 NapC/NirT cytochrome c family, N-terminal region H5404_RS14225 PF13460 NAD(P)H-binding H5404_RS14225 PF11066 Protein of unknown function (DUF2867) H5404_RS14230 PF01554 MatE H5404_RS14235 PF00005 ABC transporter H5404_RS14250 PF06965 Na+/H+ antiporter 1 H5404_RS14255 PF00440 Bacterial regulatory proteins, tetR family H5404_RS14255 PF16295 Tetracyclin repressor-like, C-terminal domain H5404_RS14260 PF09317 Domain of unknown function (DUF1974) H5404_RS14260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5404_RS14260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5404_RS14260 PF02770 Acyl-CoA dehydrogenase, middle domain H5404_RS14265 PF12241 Trans-2-enoyl-CoA reductase catalytic region H5404_RS14265 PF07055 Enoyl reductase FAD binding domain H5404_RS14265 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase H5404_RS14270 PF02080 TrkA-C domain H5404_RS14270 PF06826 Predicted Permease Membrane Region H5404_RS14275 PF00462 Glutaredoxin H5404_RS14280 PF00465 Iron-containing alcohol dehydrogenase H5404_RS14285 PF01418 Helix-turn-helix domain, rpiR family H5404_RS14285 PF01380 SIS domain H5404_RS14290 PF00282 Pyridoxal-dependent decarboxylase conserved domain H5404_RS14300 PF03956 Lysine exporter LysO H5404_RS14310 PF04993 TfoX N-terminal domain H5404_RS14310 PF04994 TfoX C-terminal domain H5404_RS14325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS14325 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_RS14325 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS14335 PF00266 Aminotransferase class-V H5404_RS14340 PF00291 Pyridoxal-phosphate dependent enzyme H5404_RS14345 PF00005 ABC transporter H5404_RS14345 PF00664 ABC transporter transmembrane region H5404_RS14350 PF00005 ABC transporter H5404_RS14350 PF00664 ABC transporter transmembrane region H5404_RS14355 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS14365 PF00266 Aminotransferase class-V H5404_RS14375 PF00072 Response regulator receiver domain H5404_RS14375 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS14380 PF00939 Sodium:sulfate symporter transmembrane region H5404_RS14385 PF02698 DUF218 domain H5404_RS14390 PF03949 Malic enzyme, NAD binding domain H5404_RS14390 PF00390 Malic enzyme, N-terminal domain H5404_RS14395 PF00270 DEAD/DEAH box helicase H5404_RS14395 PF00271 Helicase conserved C-terminal domain H5404_RS14395 PF08482 ATP-dependent helicase C-terminal H5404_RS14395 PF04408 Helicase associated domain (HA2) H5404_RS14400 PF02253 Phospholipase A1 H5404_RS14410 PF09423 PhoD-like phosphatase H5404_RS14410 PF16655 PhoD-like phosphatase, N-terminal domain H5404_RS14415 PF01259 SAICAR synthetase H5404_RS14435 PF05736 OprF membrane domain H5404_RS14435 PF00691 OmpA family H5404_RS14450 PF01565 FAD binding domain H5404_RS14450 PF13183 4Fe-4S dicluster domain H5404_RS14450 PF02913 FAD linked oxidases, C-terminal domain H5404_RS14455 PF04191 Phospholipid methyltransferase H5404_RS14465 PF00221 Aromatic amino acid lyase H5404_RS14470 PF01175 Urocanase Rossmann-like domain H5404_RS14470 PF17391 Urocanase N-terminal domain H5404_RS14470 PF17392 Urocanase C-terminal domain H5404_RS14475 PF00491 Arginase family H5404_RS14480 PF01979 Amidohydrolase family H5404_RS14485 PF00392 Bacterial regulatory proteins, gntR family H5404_RS14485 PF07702 UTRA domain H5404_RS14500 PF02824 TGS domain H5404_RS14500 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H5404_RS14500 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H5404_RS14500 PF03129 Anticodon binding domain H5404_RS14505 PF05198 Translation initiation factor IF-3, N-terminal domain H5404_RS14505 PF00707 Translation initiation factor IF-3, C-terminal domain H5404_RS14510 PF01632 Ribosomal protein L35 H5404_RS14515 PF00453 Ribosomal protein L20 H5404_RS14520 PF01906 Putative heavy-metal-binding H5404_RS14550 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS14550 PF17158 Membrane-associated sensor, integral membrane domain H5404_RS14555 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain H5404_RS14555 PF01409 tRNA synthetases class II core domain (F) H5404_RS14560 PF03483 B3/4 domain H5404_RS14560 PF03484 tRNA synthetase B5 domain H5404_RS14560 PF03147 Ferredoxin-fold anticodon binding domain H5404_RS14560 PF01588 Putative tRNA binding domain H5404_RS14560 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain H5404_RS14570 PF00216 Bacterial DNA-binding protein H5404_RS14580 PF05724 Thiopurine S-methyltransferase (TPMT) H5404_RS14585 PF02222 ATP-grasp domain H5404_RS14590 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region H5404_RS14590 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region H5404_RS14595 PF04172 LrgB-like family H5404_RS14600 PF03788 LrgA family H5404_RS14605 PF08411 Exonuclease C-terminal H5404_RS14605 PF00929 Exonuclease H5404_RS14610 PF00375 Sodium:dicarboxylate symporter family H5404_RS14615 PF13460 NAD(P)H-binding H5404_RS14620 PF02277 Phosphoribosyltransferase H5404_RS14625 PF02654 Cobalamin-5-phosphate synthase H5404_RS14630 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase H5404_RS14635 PF00300 Histidine phosphatase superfamily (branch 1) H5404_RS14645 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family H5404_RS14650 PF01032 FecCD transport family H5404_RS14655 PF00005 ABC transporter H5404_RS14675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS14675 PF03466 LysR substrate binding domain H5404_RS14695 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase H5404_RS14700 PF16363 GDP-mannose 4,6 dehydratase H5404_RS14705 PF04991 LicD family H5404_RS14710 PF01863 Protein of unknown function DUF45 H5404_RS14715 PF05971 RNA methyltransferase H5404_RS14735 PF00392 Bacterial regulatory proteins, gntR family H5404_RS14740 PF00171 Aldehyde dehydrogenase family H5404_RS14745 PF05544 Proline racemase H5404_RS14750 PF01266 FAD dependent oxidoreductase H5404_RS14750 PF05430 S-adenosyl-L-methionine-dependent methyltransferase H5404_RS14760 PF02423 Ornithine cyclodeaminase/mu-crystallin family H5404_RS14765 PF00701 Dihydrodipicolinate synthetase family H5404_RS14770 PF00005 ABC transporter H5404_RS14770 PF08402 TOBE domain H5404_RS14775 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS14780 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS14790 PF01752 Collagenase H5404_RS14790 PF08453 Peptidase family M9 N-terminal H5404_RS14800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS14800 PF00005 ABC transporter H5404_RS14805 PF00005 ABC transporter H5404_RS14805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS14810 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS14810 PF12911 N-terminal TM domain of oligopeptide transport permease C H5404_RS14815 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS14820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_RS14825 PF01546 Peptidase family M20/M25/M40 H5404_RS14825 PF07687 Peptidase dimerisation domain H5404_RS14830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_RS14835 PF04209 homogentisate 1,2-dioxygenase H5404_RS14845 PF14497 Glutathione S-transferase, C-terminal domain H5404_RS14845 PF02798 Glutathione S-transferase, N-terminal domain H5404_RS14890 PF13533 Biotin-lipoyl like H5404_RS14900 PF02405 Permease MlaE H5404_RS14905 PF00005 ABC transporter H5404_RS14920 PF12794 Mechanosensitive ion channel inner membrane domain 1 H5404_RS14920 PF12795 Mechanosensitive ion channel porin domain H5404_RS14920 PF00924 Mechanosensitive ion channel H5404_RS14925 PF01546 Peptidase family M20/M25/M40 H5404_RS14925 PF07687 Peptidase dimerisation domain H5404_RS14930 PF08543 Phosphomethylpyrimidine kinase H5404_RS14935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS14935 PF03466 LysR substrate binding domain H5404_RS14955 PF00300 Histidine phosphatase superfamily (branch 1) H5404_RS14970 PF00939 Sodium:sulfate symporter transmembrane region H5404_RS14975 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS14975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS14975 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_RS14980 PF02954 Bacterial regulatory protein, Fis family H5404_RS14980 PF00072 Response regulator receiver domain H5404_RS14980 PF00158 Sigma-54 interaction domain H5404_RS14985 PF00563 EAL domain H5404_RS14985 PF03707 Bacterial signalling protein N terminal repeat H5404_RS14985 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS14990 PF01966 HD domain H5404_RS14990 PF11871 Domain of unknown function (DUF3391) H5404_RS14995 PF01810 LysE type translocator H5404_RS15000 PF11230 Protein of unknown function (DUF3029) H5404_RS15005 PF04055 Radical SAM superfamily H5404_RS15015 PF03741 Integral membrane protein TerC family H5404_RS15020 PF08525 Opacity-associated protein A N-terminal motif H5404_RS15020 PF01551 Peptidase family M23 H5404_RS15020 PF01476 LysM domain H5404_RS15050 PF02954 Bacterial regulatory protein, Fis family H5404_RS15050 PF00072 Response regulator receiver domain H5404_RS15050 PF00158 Sigma-54 interaction domain H5404_RS15055 PF17871 AAA lid domain H5404_RS15055 PF07724 AAA domain (Cdc48 subfamily) H5404_RS15055 PF00004 ATPase family associated with various cellular activities (AAA) H5404_RS15055 PF10431 C-terminal, D2-small domain, of ClpB protein H5404_RS15060 PF05638 Type VI secretion system effector, Hcp H5404_RS15065 PF04717 Type VI secretion system, phage-baseplate injector H5404_RS15090 PF00069 Protein kinase domain H5404_RS15105 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath H5404_RS15115 PF05947 Type VI secretion system, TssF H5404_RS15125 PF01037 Lrp/AsnC ligand binding domain H5404_RS15155 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE H5404_RS15235 PF01966 HD domain H5404_RS15240 PF00465 Iron-containing alcohol dehydrogenase H5404_RS15245 PF03222 Tryptophan/tyrosine permease family H5404_RS15265 PF00005 ABC transporter H5404_RS15265 PF00664 ABC transporter transmembrane region H5404_RS15270 PF00664 ABC transporter transmembrane region H5404_RS15270 PF00005 ABC transporter H5404_RS15295 PF00012 Hsp70 protein H5404_RS15300 PF00012 Hsp70 protein H5404_RS15310 PF17158 Membrane-associated sensor, integral membrane domain H5404_RS15310 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS15340 PF01568 Molydopterin dinucleotide binding domain H5404_RS15340 PF00384 Molybdopterin oxidoreductase H5404_RS15340 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5404_RS15345 PF12800 4Fe-4S binding domain H5404_RS15345 PF13247 4Fe-4S dicluster domain H5404_RS15350 PF04976 DMSO reductase anchor subunit (DmsC) H5404_RS15355 PF02613 Nitrate reductase delta subunit H5404_RS15365 PF02525 Flavodoxin-like fold H5404_RS15370 PF11898 Domain of unknown function (DUF3418) H5404_RS15370 PF00271 Helicase conserved C-terminal domain H5404_RS15370 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold H5404_RS15370 PF00270 DEAD/DEAH box helicase H5404_RS15370 PF04408 Helicase associated domain (HA2) H5404_RS15385 PF02028 BCCT, betaine/carnitine/choline family transporter H5404_RS15395 PF02397 Bacterial sugar transferase H5404_RS15400 PF00535 Glycosyl transferase family 2 H5404_RS15405 PF00534 Glycosyl transferases group 1 H5404_RS15405 PF13439 Glycosyltransferase Family 4 H5404_RS15435 PF13439 Glycosyltransferase Family 4 H5404_RS15435 PF00534 Glycosyl transferases group 1 H5404_RS15440 PF13439 Glycosyltransferase Family 4 H5404_RS15440 PF00534 Glycosyl transferases group 1 H5404_RS15445 PF00158 Sigma-54 interaction domain H5404_RS15445 PF00072 Response regulator receiver domain H5404_RS15445 PF02954 Bacterial regulatory protein, Fis family H5404_RS15460 PF02563 Polysaccharide biosynthesis/export protein H5404_RS15460 PF10531 SLBB domain H5404_RS15470 PF01740 STAS domain H5404_RS15475 PF14743 DNA ligase OB-like domain H5404_RS15475 PF01068 ATP dependent DNA ligase domain H5404_RS15485 PF01554 MatE H5404_RS15490 PF00677 Lumazine binding domain H5404_RS15500 PF03881 Fructosamine kinase H5404_RS15505 PF01339 CheB methylesterase H5404_RS15505 PF00072 Response regulator receiver domain H5404_RS15510 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS15510 PF05230 MASE2 domain H5404_RS15520 PF00877 NlpC/P60 family H5404_RS15525 PF17202 Single cache domain 3 H5404_RS15525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS15525 PF00672 HAMP domain H5404_RS15560 PF03942 DTW domain H5404_RS15565 PF00480 ROK family H5404_RS15575 PF03453 MoeA N-terminal region (domain I and II) H5404_RS15575 PF03454 MoeA C-terminal region (domain IV) H5404_RS15575 PF00994 Probable molybdopterin binding domain H5404_RS15580 PF12804 MobA-like NTP transferase domain H5404_RS15585 PF00005 ABC transporter H5404_RS15585 PF08402 TOBE domain H5404_RS15590 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS15595 PF12849 PBP superfamily domain H5404_RS15600 PF00158 Sigma-54 interaction domain H5404_RS15600 PF00072 Response regulator receiver domain H5404_RS15600 PF02954 Bacterial regulatory protein, Fis family H5404_RS15605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS15605 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS15610 PF00005 ABC transporter H5404_RS15610 PF12848 ABC transporter H5404_RS15615 PF02634 FdhD/NarQ family H5404_RS15635 PF02613 Nitrate reductase delta subunit H5404_RS15645 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5404_RS15645 PF00384 Molybdopterin oxidoreductase H5404_RS15645 PF01568 Molydopterin dinucleotide binding domain H5404_RS15650 PF13247 4Fe-4S dicluster domain H5404_RS15665 PF03527 RHS protein H5404_RS15665 PF05593 RHS Repeat H5404_RS15675 PF00909 Ammonium Transporter Family H5404_RS15685 PF02146 Sir2 family H5404_RS15690 PF13416 Bacterial extracellular solute-binding protein H5404_RS15695 PF13416 Bacterial extracellular solute-binding protein H5404_RS15700 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS15705 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS15710 PF00005 ABC transporter H5404_RS15710 PF08402 TOBE domain H5404_RS15730 PF01171 PP-loop family H5404_RS15735 PF00582 Universal stress protein family H5404_RS15740 PF00027 Cyclic nucleotide-binding domain H5404_RS15740 PF13545 Crp-like helix-turn-helix domain H5404_RS15755 PF00403 Heavy-metal-associated domain H5404_RS15765 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H5404_RS15765 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP H5404_RS15780 PF00115 Cytochrome C and Quinol oxidase polypeptide I H5404_RS15795 PF00072 Response regulator receiver domain H5404_RS15795 PF09308 LuxQ, periplasmic H5404_RS15795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS15795 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS15815 PF06303 MatP N-terminal domain H5404_RS15815 PF17414 MatP C-terminal ribbon-helix-helix domain H5404_RS15820 PF13654 AAA domain H5404_RS15820 PF05362 Lon protease (S16) C-terminal proteolytic domain H5404_RS15825 PF07977 FabA-like domain H5404_RS15830 PF04957 Ribosome modulation factor H5404_RS15840 PF16326 ABC transporter C-terminal domain H5404_RS15840 PF12848 ABC transporter H5404_RS15840 PF00005 ABC transporter H5404_RS15850 PF10672 S-adenosylmethionine-dependent methyltransferase H5404_RS15850 PF02926 THUMP domain H5404_RS15850 PF01170 Putative RNA methylase family UPF0020 H5404_RS15855 PF07126 Cell-division protein ZapC H5404_RS15860 PF01180 Dihydroorotate dehydrogenase H5404_RS15865 PF05088 Bacterial NAD-glutamate dehydrogenase H5404_RS15875 PF01433 Peptidase family M1 domain H5404_RS15875 PF17432 Domain of unknown function (DUF3458_C) ARM repeats H5404_RS15875 PF11940 Domain of unknown function (DUF3458) Ig-like fold H5404_RS15885 PF17804 Tail specific protease N-terminal domain H5404_RS15885 PF11818 C-terminal domain of tail specific protease (DUF3340) H5404_RS15885 PF00595 PDZ domain H5404_RS15885 PF03572 Peptidase family S41 H5404_RS15890 PF04352 ProQ/FINO family H5404_RS15890 PF17516 ProQ C-terminal domain H5404_RS15895 PF13185 GAF domain H5404_RS15900 PF00664 ABC transporter transmembrane region H5404_RS15900 PF00005 ABC transporter H5404_RS15905 PF04403 Paraquat-inducible protein A H5404_RS15910 PF02470 MlaD protein H5404_RS15915 PF01189 16S rRNA methyltransferase RsmB/F H5404_RS15915 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF H5404_RS15915 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF H5404_RS15935 PF00793 DAHP synthetase I family H5404_RS15940 PF04461 Protein of unknown function (DUF520) H5404_RS15945 PF10414 Sirohaem synthase dimerisation region H5404_RS15945 PF14824 Sirohaem biosynthesis protein central H5404_RS15945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases H5404_RS15950 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_RS15955 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS15960 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS15965 PF00005 ABC transporter H5404_RS15970 PF01027 Inhibitor of apoptosis-promoting Bax1 H5404_RS15980 PF04358 DsrC like protein H5404_RS15985 PF00708 Acylphosphatase H5404_RS15990 PF02743 Cache domain H5404_RS15990 PF00672 HAMP domain H5404_RS15990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS15995 PF17785 PUA-like domain H5404_RS15995 PF10672 S-adenosylmethionine-dependent methyltransferase H5404_RS16010 PF00691 OmpA family H5404_RS16010 PF05736 OprF membrane domain H5404_RS16025 PF00691 OmpA family H5404_RS16025 PF05736 OprF membrane domain H5404_RS16035 PF17158 Membrane-associated sensor, integral membrane domain H5404_RS16035 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS16040 PF06508 Queuosine biosynthesis protein QueC H5404_RS16045 PF04055 Radical SAM superfamily H5404_RS16060 PF00089 Trypsin H5404_RS16065 PF00583 Acetyltransferase (GNAT) family H5404_RS16070 PF00501 AMP-binding enzyme H5404_RS16070 PF13193 AMP-binding enzyme C-terminal domain H5404_RS16070 PF16177 Acetyl-coenzyme A synthetase N-terminus H5404_RS16075 PF04303 PrpF protein H5404_RS16080 PF00694 Aconitase C-terminal domain H5404_RS16080 PF00330 Aconitase family (aconitate hydratase) H5404_RS16085 PF00285 Citrate synthase, C-terminal domain H5404_RS16115 PF01970 Tripartite tricarboxylate transporter TctA family H5404_RS16120 PF01925 Sulfite exporter TauE/SafE H5404_RS16130 PF05844 YopD protein H5404_RS16140 PF07720 Tetratricopeptide repeat H5404_RS16145 PF04792 V antigen (LcrV) protein H5404_RS16150 PF07216 LcrG protein H5404_RS16155 PF09621 Type III secretion system regulator (LcrR) H5404_RS16160 PF00771 FHIPEP family H5404_RS16180 PF09059 TyeA H5404_RS16185 PF07201 HrpJ-like domain H5404_RS16190 PF18269 T3SS EscN ATPase C-terminal domain H5404_RS16190 PF02874 ATP synthase alpha/beta family, beta-barrel domain H5404_RS16190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5404_RS16205 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H5404_RS16210 PF00813 FliP family H5404_RS16215 PF01313 Bacterial export proteins, family 3 H5404_RS16220 PF01311 Bacterial export proteins, family 1 H5404_RS16225 PF01312 FlhB HrpN YscU SpaS Family H5404_RS16230 PF03466 LysR substrate binding domain H5404_RS16230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS16235 PF12146 Serine aminopeptidase, S33 H5404_RS16240 PF12146 Serine aminopeptidase, S33 H5404_RS16270 PF02661 Fic/DOC family H5404_RS16280 PF02108 Flagellar assembly protein FliH H5404_RS16290 PF01514 Secretory protein of YscJ/FliF family H5404_RS16295 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI H5404_RS16305 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) H5404_RS16310 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF H5404_RS16320 PF16697 Inner membrane component of T3SS, cytoplasmic domain H5404_RS16320 PF16693 Inner membrane component of T3SS, periplasmic domain H5404_RS16325 PF03958 Bacterial type II/III secretion system short domain H5404_RS16325 PF00263 Bacterial type II and III secretion system protein H5404_RS16340 PF12833 Helix-turn-helix domain H5404_RS16360 PF00171 Aldehyde dehydrogenase family H5404_RS16365 PF00158 Sigma-54 interaction domain H5404_RS16365 PF01590 GAF domain H5404_RS16365 PF02954 Bacterial regulatory protein, Fis family H5404_RS16380 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase H5404_RS16380 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain H5404_RS16385 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase H5404_RS16390 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain H5404_RS16390 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain H5404_RS16395 PF00072 Response regulator receiver domain H5404_RS16395 PF12431 Transcriptional regulator H5404_RS16400 PF00989 PAS fold H5404_RS16400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS16400 PF17203 Single cache domain 3 H5404_RS16400 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain H5404_RS16415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS16430 PF03150 Di-haem cytochrome c peroxidase H5404_RS16430 PF00034 Cytochrome c H5404_RS16435 PF00696 Amino acid kinase family H5404_RS16435 PF13840 ACT domain H5404_RS16440 PF06339 Ectoine synthase H5404_RS16445 PF00202 Aminotransferase class-III H5404_RS16450 PF00583 Acetyltransferase (GNAT) family H5404_RS16455 PF02028 BCCT, betaine/carnitine/choline family transporter H5404_RS16470 PF00005 ABC transporter H5404_RS16470 PF00571 CBS domain H5404_RS16475 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS16480 PF04069 Substrate binding domain of ABC-type glycine betaine transport system H5404_RS16490 PF00501 AMP-binding enzyme H5404_RS16510 PF00486 Transcriptional regulatory protein, C terminal H5404_RS16510 PF00072 Response regulator receiver domain H5404_RS16515 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS16515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS16515 PF08521 Two-component sensor kinase N-terminal H5404_RS16520 PF00884 Sulfatase H5404_RS16545 PF01235 Sodium:alanine symporter family H5404_RS16555 PF01810 LysE type translocator H5404_RS16560 PF02074 Carboxypeptidase Taq (M32) metallopeptidase H5404_RS16565 PF07804 HipA-like C-terminal domain H5404_RS16565 PF13657 HipA N-terminal domain H5404_RS16570 PF02463 RecF/RecN/SMC N terminal domain H5404_RS16580 PF00872 Transposase, Mutator family H5404_RS16615 PF10509 Galactokinase galactose-binding signature H5404_RS16615 PF08544 GHMP kinases C terminal H5404_RS16615 PF00288 GHMP kinases N terminal domain H5404_RS16620 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain H5404_RS16620 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain H5404_RS16625 PF16363 GDP-mannose 4,6 dehydratase H5404_RS16630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS16630 PF00672 HAMP domain H5404_RS16630 PF12729 Four helix bundle sensory module for signal transduction H5404_RS16635 PF02264 LamB porin H5404_RS16640 PF08533 Beta-galactosidase C-terminal domain H5404_RS16640 PF08532 Beta-galactosidase trimerisation domain H5404_RS16640 PF02449 Beta-galactosidase H5404_RS16645 PF07745 Glycosyl hydrolase family 53 H5404_RS16650 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS16655 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS16660 PF13416 Bacterial extracellular solute-binding protein H5404_RS16665 PF17912 MalK OB fold domain H5404_RS16665 PF00005 ABC transporter H5404_RS16670 PF00356 Bacterial regulatory proteins, lacI family H5404_RS16675 PF07745 Glycosyl hydrolase family 53 H5404_RS16685 PF00872 Transposase, Mutator family H5404_RS16730 PF00872 Transposase, Mutator family H5404_RS16750 PF13408 Recombinase zinc beta ribbon domain H5404_RS16750 PF00239 Resolvase, N terminal domain H5404_RS16750 PF07508 Recombinase H5404_RS16765 PF13286 Phosphohydrolase-associated domain H5404_RS16765 PF01966 HD domain H5404_RS16780 PF03279 Bacterial lipid A biosynthesis acyltransferase H5404_RS16785 PF13520 Amino acid permease H5404_RS16795 PF04204 Homoserine O-succinyltransferase H5404_RS16810 PF00563 EAL domain H5404_RS16810 PF03707 Bacterial signalling protein N terminal repeat H5404_RS16810 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS16815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H5404_RS16815 PF00672 HAMP domain H5404_RS16815 PF00072 Response regulator receiver domain H5404_RS16815 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS16815 PF01627 Hpt domain H5404_RS16815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS16830 PF12464 Maltose acetyltransferase H5404_RS16830 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_RS16840 PF01928 CYTH domain H5404_RS16850 PF04237 YjbR H5404_RS16855 PF01047 MarR family H5404_RS16865 PF12833 Helix-turn-helix domain H5404_RS16870 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H5404_RS16870 PF01411 tRNA synthetases class II (A) H5404_RS16870 PF02272 DHHA1 domain H5404_RS16880 PF00563 EAL domain H5404_RS16880 PF00196 Bacterial regulatory proteins, luxR family H5404_RS16885 PF01368 DHH family H5404_RS16885 PF02833 DHHA2 domain H5404_RS16890 PF00202 Aminotransferase class-III H5404_RS16895 PF00171 Aldehyde dehydrogenase family H5404_RS16900 PF04371 Porphyromonas-type peptidyl-arginine deiminase H5404_RS16905 PF00795 Carbon-nitrogen hydrolase H5404_RS16910 PF01266 FAD dependent oxidoreductase H5404_RS16915 PF00171 Aldehyde dehydrogenase family H5404_RS16920 PF01381 Helix-turn-helix H5404_RS16920 PF07883 Cupin domain H5404_RS16925 PF07722 Peptidase C26 H5404_RS16930 PF00120 Glutamine synthetase, catalytic domain H5404_RS16935 PF03553 Na+/H+ antiporter family H5404_RS16955 PF13302 Acetyltransferase (GNAT) domain H5404_RS16960 PF01810 LysE type translocator H5404_RS17010 PF13276 HTH-like domain H5404_RS17010 PF00665 Integrase core domain H5404_RS17010 PF13333 Integrase core domain H5404_RS17060 PF00583 Acetyltransferase (GNAT) family H5404_RS17125 PF13333 Integrase core domain H5404_RS17125 PF00665 Integrase core domain H5404_RS17125 PF13276 HTH-like domain H5404_RS17160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_RS17165 PF13333 Integrase core domain H5404_RS17165 PF00665 Integrase core domain H5404_RS17165 PF13276 HTH-like domain H5404_RS17255 PF01810 LysE type translocator H5404_RS17435 PF13495 Phage integrase, N-terminal SAM-like domain H5404_RS17435 PF00589 Phage integrase family H5404_RS17450 PF13302 Acetyltransferase (GNAT) domain H5404_RS17455 PF00158 Sigma-54 interaction domain H5404_RS17455 PF18024 Helix-turn-helix domain H5404_RS17460 PF05128 Domain of unknown function (DUF697) H5404_RS17465 PF04317 YcjX-like family, DUF463 H5404_RS17480 PF04715 Anthranilate synthase component I, N terminal region H5404_RS17480 PF00425 chorismate binding enzyme H5404_RS17485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS17485 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS17485 PF00072 Response regulator receiver domain H5404_RS17485 PF09308 LuxQ, periplasmic H5404_RS17495 PF00293 NUDIX domain H5404_RS17500 PF03222 Tryptophan/tyrosine permease family H5404_RS17505 PF03313 Serine dehydratase alpha chain H5404_RS17505 PF03315 Serine dehydratase beta chain H5404_RS17510 PF04940 Sensors of blue-light using FAD H5404_RS17510 PF00563 EAL domain H5404_RS17520 PF01242 6-pyruvoyl tetrahydropterin synthase H5404_RS17525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS17525 PF12729 Four helix bundle sensory module for signal transduction H5404_RS17525 PF00672 HAMP domain H5404_RS17530 PF01336 OB-fold nucleic acid binding domain H5404_RS17530 PF00152 tRNA synthetases class II (D, K and N) H5404_RS17540 PF00155 Aminotransferase class I and II H5404_RS17540 PF00392 Bacterial regulatory proteins, gntR family H5404_RS17555 PF00155 Aminotransferase class I and II H5404_RS17575 PF00672 HAMP domain H5404_RS17575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS17580 PF02028 BCCT, betaine/carnitine/choline family transporter H5404_RS17585 PF01047 MarR family H5404_RS17590 PF00072 Response regulator receiver domain H5404_RS17590 PF00196 Bacterial regulatory proteins, luxR family H5404_RS17595 PF17200 Single Cache domain 2 H5404_RS17595 PF07730 Histidine kinase H5404_RS17600 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component H5404_RS17610 PF03480 Bacterial extracellular solute-binding protein, family 7 H5404_RS17625 PF00753 Metallo-beta-lactamase superfamily H5404_RS17630 PF05951 Bacterial protein of unknown function (DUF882) H5404_RS17635 PF03734 L,D-transpeptidase catalytic domain H5404_RS17635 PF01471 Putative peptidoglycan binding domain H5404_RS17660 PF00925 GTP cyclohydrolase II H5404_RS17670 PF03918 Cytochrome C biogenesis protein H5404_RS17675 PF08534 Redoxin H5404_RS17680 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal H5404_RS17680 PF01578 Cytochrome C assembly protein H5404_RS17685 PF03916 Polysulphide reductase, NrfD H5404_RS17690 PF13247 4Fe-4S dicluster domain H5404_RS17700 PF02335 Cytochrome c552 H5404_RS17715 PF00521 DNA gyrase/topoisomerase IV, subunit A H5404_RS17715 PF03989 DNA gyrase C-terminal domain, beta-propeller H5404_RS17725 PF00317 Ribonucleotide reductase, all-alpha domain H5404_RS17725 PF03477 ATP cone domain H5404_RS17725 PF02867 Ribonucleotide reductase, barrel domain H5404_RS17730 PF00268 Ribonucleotide reductase, small chain H5404_RS17740 PF00994 Probable molybdopterin binding domain H5404_RS17755 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H5404_RS17760 PF16653 Saccharopine dehydrogenase C-terminal domain H5404_RS17760 PF03435 Saccharopine dehydrogenase NADP binding domain H5404_RS17765 PF00202 Aminotransferase class-III H5404_RS17790 PF01066 CDP-alcohol phosphatidyltransferase H5404_RS17795 PF01541 GIY-YIG catalytic domain H5404_RS17795 PF08459 UvrC Helix-hairpin-helix N-terminal H5404_RS17795 PF02151 UvrB/uvrC motif H5404_RS17800 PF00072 Response regulator receiver domain H5404_RS17800 PF00196 Bacterial regulatory proteins, luxR family H5404_RS17805 PF00136 DNA polymerase family B H5404_RS17805 PF03104 DNA polymerase family B, exonuclease domain H5404_RS17815 PF08207 Elongation factor P (EF-P) KOW-like domain H5404_RS17815 PF01132 Elongation factor P (EF-P) OB domain H5404_RS17815 PF09285 Elongation factor P, C-terminal H5404_RS17820 PF04269 Protein of unknown function, DUF440 H5404_RS17825 PF01479 S4 domain H5404_RS17825 PF00849 RNA pseudouridylate synthase H5404_RS17835 PF01300 Telomere recombination H5404_RS17840 PF02811 PHP domain H5404_RS17845 PF08056 Tryptophan operon leader peptide H5404_RS17850 PF04715 Anthranilate synthase component I, N terminal region H5404_RS17850 PF00425 chorismate binding enzyme H5404_RS17855 PF00117 Glutamine amidotransferase class-I H5404_RS17860 PF02885 Glycosyl transferase family, helical bundle domain H5404_RS17860 PF00591 Glycosyl transferase family, a/b domain H5404_RS17865 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase H5404_RS17865 PF00218 Indole-3-glycerol phosphate synthase H5404_RS17870 PF00291 Pyridoxal-phosphate dependent enzyme H5404_RS17875 PF00290 Tryptophan synthase alpha chain H5404_RS17880 PF00027 Cyclic nucleotide-binding domain H5404_RS17880 PF13545 Crp-like helix-turn-helix domain H5404_RS17885 PF13193 AMP-binding enzyme C-terminal domain H5404_RS17885 PF00501 AMP-binding enzyme H5404_RS17895 PF00375 Sodium:dicarboxylate symporter family H5404_RS18020 PF00717 Peptidase S24-like H5404_RS18025 PF11799 impB/mucB/samB family C-terminal domain H5404_RS18025 PF13438 Domain of unknown function (DUF4113) H5404_RS18025 PF00817 impB/mucB/samB family H5404_RS18060 PF07669 Eco57I restriction-modification methylase H5404_RS18065 PF17728 BsuBI/PstI restriction endonuclease HTH domain H5404_RS18065 PF06616 BsuBI/PstI restriction endonuclease domain H5404_RS18230 PF17327 Acyl homoserine lactone synthase H5404_RS18235 PF00072 Response regulator receiver domain H5404_RS18235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS18245 PF04279 Intracellular septation protein A H5404_RS18250 PF03061 Thioesterase superfamily H5404_RS18255 PF03795 YCII-related domain H5404_RS18280 PF13401 AAA domain H5404_RS18280 PF09077 Mu B transposition protein, C terminal H5404_RS18330 PF02810 SEC-C motif H5404_RS18505 PF01555 DNA methylase H5404_RS18530 PF01717 Cobalamin-independent synthase, Catalytic domain H5404_RS18530 PF08267 Cobalamin-independent synthase, N-terminal domain H5404_RS18535 PF03466 LysR substrate binding domain H5404_RS18535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS18550 PF00360 Phytochrome region H5404_RS18550 PF01590 GAF domain H5404_RS18550 PF00563 EAL domain H5404_RS18550 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS18555 PF08497 Radical SAM N-terminal H5404_RS18555 PF11842 Domain of unknown function (DUF3362) H5404_RS18555 PF04055 Radical SAM superfamily H5404_RS18560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS18560 PF00672 HAMP domain H5404_RS18565 PF00486 Transcriptional regulatory protein, C terminal H5404_RS18565 PF00072 Response regulator receiver domain H5404_RS18570 PF00672 HAMP domain H5404_RS18570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS18570 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS18590 PF03466 LysR substrate binding domain H5404_RS18590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS18595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS18595 PF00529 HlyD membrane-fusion protein of T1SS H5404_RS18605 PF01717 Cobalamin-independent synthase, Catalytic domain H5404_RS18605 PF08267 Cobalamin-independent synthase, N-terminal domain H5404_RS18615 PF12833 Helix-turn-helix domain H5404_RS18615 PF02311 AraC-like ligand binding domain H5404_RS18620 PF00857 Isochorismatase family H5404_RS18625 PF00005 ABC transporter H5404_RS18625 PF12704 MacB-like periplasmic core domain H5404_RS18625 PF02687 FtsX-like permease family H5404_RS18630 PF02687 FtsX-like permease family H5404_RS18630 PF12704 MacB-like periplasmic core domain H5404_RS18630 PF00005 ABC transporter H5404_RS18635 PF02687 FtsX-like permease family H5404_RS18635 PF12704 MacB-like periplasmic core domain H5404_RS18635 PF00005 ABC transporter H5404_RS18645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion H5404_RS18660 PF05958 tRNA (Uracil-5-)-methyltransferase H5404_RS18675 PF00085 Thioredoxin H5404_RS18680 PF02683 Cytochrome C biogenesis protein transmembrane region H5404_RS18680 PF11412 Disulphide bond corrector protein DsbC H5404_RS18690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS18690 PF03466 LysR substrate binding domain H5404_RS18695 PF00072 Response regulator receiver domain H5404_RS18695 PF00196 Bacterial regulatory proteins, luxR family H5404_RS18700 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS18700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS18705 PF13247 4Fe-4S dicluster domain H5404_RS18710 PF03916 Polysulphide reductase, NrfD H5404_RS18715 PF01568 Molydopterin dinucleotide binding domain H5404_RS18715 PF00384 Molybdopterin oxidoreductase H5404_RS18715 PF04879 Molybdopterin oxidoreductase Fe4S4 domain H5404_RS18720 PF00034 Cytochrome c H5404_RS18725 PF13442 Cytochrome C oxidase, cbb3-type, subunit III H5404_RS18730 PF04403 Paraquat-inducible protein A H5404_RS18735 PF02470 MlaD protein H5404_RS18745 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase H5404_RS18755 PF00535 Glycosyl transferase family 2 H5404_RS18760 PF01370 NAD dependent epimerase/dehydratase family H5404_RS18770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_RS18775 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family H5404_RS18780 PF18073 Rubredoxin metal binding domain H5404_RS18785 PF06305 Lipopolysaccharide assembly protein A domain H5404_RS18790 PF00216 Bacterial DNA-binding protein H5404_RS18795 PF00575 S1 RNA binding domain H5404_RS18800 PF02224 Cytidylate kinase H5404_RS18805 PF08496 Peptidase family S49 N-terminal H5404_RS18805 PF01343 Peptidase family S49 H5404_RS18810 PF00106 short chain dehydrogenase H5404_RS18825 PF07733 Bacterial DNA polymerase III alpha NTPase domain H5404_RS18825 PF01336 OB-fold nucleic acid binding domain H5404_RS18825 PF02811 PHP domain H5404_RS18825 PF14579 Helix-hairpin-helix motif H5404_RS18825 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H5404_RS18830 PF00072 Response regulator receiver domain H5404_RS18830 PF01584 CheW-like domain H5404_RS18835 PF00480 ROK family H5404_RS18840 PF00224 Pyruvate kinase, barrel domain H5404_RS18840 PF02887 Pyruvate kinase, alpha/beta domain H5404_RS18845 PF01734 Patatin-like phospholipase H5404_RS18860 PF00209 Sodium:neurotransmitter symporter family H5404_RS18875 PF02378 Phosphotransferase system, EIIC H5404_RS18875 PF00367 phosphotransferase system, EIIB H5404_RS18880 PF01026 TatD related DNase H5404_RS18885 PF09115 DNA polymerase III, delta subunit, C terminal H5404_RS18890 PF02223 Thymidylate kinase H5404_RS18895 PF02618 YceG-like family H5404_RS18900 PF01063 Amino-transferase class IV H5404_RS18905 PF02801 Beta-ketoacyl synthase, C-terminal domain H5404_RS18905 PF00109 Beta-ketoacyl synthase, N-terminal domain H5404_RS18910 PF00550 Phosphopantetheine attachment site H5404_RS18920 PF00698 Acyl transferase domain H5404_RS18925 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III H5404_RS18925 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal H5404_RS18930 PF02504 Fatty acid synthesis protein H5404_RS18935 PF01783 Ribosomal L32p protein family H5404_RS18940 PF02620 Large ribosomal RNA subunit accumulation protein YceD H5404_RS18945 PF02545 Maf-like protein H5404_RS18950 PF01479 S4 domain H5404_RS18950 PF00849 RNA pseudouridylate synthase H5404_RS18955 PF12111 Polyribonucleotide phosphorylase C terminal H5404_RS18955 PF10150 Ribonuclease E/G family H5404_RS18955 PF00575 S1 RNA binding domain H5404_RS18960 PF01740 STAS domain H5404_RS18960 PF00916 Sulfate permease family H5404_RS18965 PF01451 Low molecular weight phosphotyrosine protein phosphatase H5404_RS18970 PF12557 Cob(I)alamin adenosyltransferase N terminal H5404_RS18970 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP H5404_RS18980 PF00485 Phosphoribulokinase / Uridine kinase family H5404_RS18985 PF10609 NUBPL iron-transfer P-loop NTPase H5404_RS18990 PF09334 tRNA synthetases class I (M) H5404_RS18990 PF01588 Putative tRNA binding domain H5404_RS19000 PF07840 FadR C-terminal domain H5404_RS19000 PF00392 Bacterial regulatory proteins, gntR family H5404_RS19005 PF06450 Bacterial Na+/H+ antiporter B (NhaB) H5404_RS19010 PF02600 Disulfide bond formation protein DsbB H5404_RS19015 PF03695 Uncharacterised protein family (UPF0149) H5404_RS19015 PF02810 SEC-C motif H5404_RS19020 PF01207 Dihydrouridine synthase (Dus) H5404_RS19025 PF00072 Response regulator receiver domain H5404_RS19025 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS19030 PF02903 Alpha amylase, N-terminal ig-like domain H5404_RS19030 PF00128 Alpha amylase, catalytic domain H5404_RS19035 PF00005 ABC transporter H5404_RS19040 PF02653 Branched-chain amino acid transport system / permease component H5404_RS19050 PF04217 Protein of unknown function, DUF412 H5404_RS19055 PF00871 Acetokinase family H5404_RS19060 PF07085 DRTGG domain H5404_RS19060 PF01515 Phosphate acetyl/butaryl transferase H5404_RS19065 PF13194 Domain of unknown function (DUF4010) H5404_RS19075 PF13409 Glutathione S-transferase, N-terminal domain H5404_RS19080 PF00005 ABC transporter H5404_RS19080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS19085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS19085 PF00005 ABC transporter H5404_RS19090 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS19090 PF12911 N-terminal TM domain of oligopeptide transport permease C H5404_RS19095 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS19100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_RS19105 PF02391 MoaE protein H5404_RS19110 PF02597 ThiS family H5404_RS19115 PF01967 MoaC family H5404_RS19120 PF00994 Probable molybdopterin binding domain H5404_RS19125 PF04055 Radical SAM superfamily H5404_RS19125 PF06463 Molybdenum Cofactor Synthesis C H5404_RS19130 PF01933 Uncharacterised protein family UPF0052 H5404_RS19135 PF01627 Hpt domain H5404_RS19140 PF02954 Bacterial regulatory protein, Fis family H5404_RS19140 PF00072 Response regulator receiver domain H5404_RS19140 PF00158 Sigma-54 interaction domain H5404_RS19145 PF00271 Helicase conserved C-terminal domain H5404_RS19145 PF12344 Ultra-violet resistance protein B H5404_RS19145 PF17757 UvrB interaction domain H5404_RS19145 PF04851 Type III restriction enzyme, res subunit H5404_RS19145 PF02151 UvrB/uvrC motif H5404_RS19155 PF02508 Rnf-Nqr subunit, membrane protein H5404_RS19160 PF04060 Putative Fe-S cluster H5404_RS19165 PF13375 RnfC Barrel sandwich hybrid domain H5404_RS19165 PF12838 4Fe-4S dicluster domain H5404_RS19165 PF10531 SLBB domain H5404_RS19165 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit H5404_RS19170 PF03116 NQR2, RnfD, RnfE family H5404_RS19175 PF04205 FMN-binding domain H5404_RS19180 PF02508 Rnf-Nqr subunit, membrane protein H5404_RS19185 PF00633 Helix-hairpin-helix motif H5404_RS19185 PF10576 Iron-sulfur binding domain of endonuclease III H5404_RS19185 PF00730 HhH-GPD superfamily base excision DNA repair protein H5404_RS19190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_RS19195 PF10952 Protein of unknown function (DUF2753) H5404_RS19200 PF00691 OmpA family H5404_RS19200 PF18393 MotY N-terminal domain H5404_RS19205 PF00929 Exonuclease H5404_RS19210 PF13726 Na+-H+ antiporter family H5404_RS19210 PF03553 Na+/H+ antiporter family H5404_RS19220 PF00462 Glutaredoxin H5404_RS19225 PF02777 Iron/manganese superoxide dismutases, C-terminal domain H5404_RS19225 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain H5404_RS19240 PF00465 Iron-containing alcohol dehydrogenase H5404_RS19240 PF00171 Aldehyde dehydrogenase family H5404_RS19245 PF01914 MarC family integral membrane protein H5404_RS19250 PF00027 Cyclic nucleotide-binding domain H5404_RS19250 PF00520 Ion transport protein H5404_RS19255 PF02774 Semialdehyde dehydrogenase, dimerisation domain H5404_RS19255 PF01118 Semialdehyde dehydrogenase, NAD binding domain H5404_RS19260 PF03553 Na+/H+ antiporter family H5404_RS19275 PF04245 37-kD nucleoid-associated bacterial protein H5404_RS19280 PF07208 Protein of unknown function (DUF1414) H5404_RS19285 PF00884 Sulfatase H5404_RS19285 PF11893 Domain of unknown function (DUF3413) H5404_RS19295 PF00850 Histone deacetylase domain H5404_RS19300 PF00106 short chain dehydrogenase H5404_RS19310 PF01131 DNA topoisomerase H5404_RS19310 PF01751 Toprim domain H5404_RS19315 PF00881 Nitroreductase family H5404_RS19320 PF00724 NADH:flavin oxidoreductase / NADH oxidase family H5404_RS19320 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS19325 PF01343 Peptidase family S49 H5404_RS19330 PF00710 Asparaginase, N-terminal H5404_RS19330 PF17763 Glutaminase/Asparaginase C-terminal domain H5404_RS19335 PF07023 Protein of unknown function (DUF1315) H5404_RS19345 PF01641 SelR domain H5404_RS19350 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H5404_RS19350 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H5404_RS19360 PF00672 HAMP domain H5404_RS19360 PF02743 Cache domain H5404_RS19360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS19365 PF13847 Methyltransferase domain H5404_RS19380 PF00245 Alkaline phosphatase H5404_RS19390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily H5404_RS19395 PF03992 Antibiotic biosynthesis monooxygenase H5404_RS19400 PF00924 Mechanosensitive ion channel H5404_RS19400 PF05552 Conserved TM helix H5404_RS19405 PF03692 Putative zinc- or iron-chelating domain H5404_RS19410 PF04226 Transglycosylase associated protein H5404_RS19415 PF03692 Putative zinc- or iron-chelating domain H5404_RS19425 PF03313 Serine dehydratase alpha chain H5404_RS19430 PF01042 Endoribonuclease L-PSP H5404_RS19440 PF00230 Major intrinsic protein H5404_RS19445 PF13662 Toprim domain H5404_RS19445 PF02132 RecR protein H5404_RS19450 PF02575 YbaB/EbfC DNA-binding family H5404_RS19455 PF12170 DNA polymerase III tau subunit V interacting with alpha H5404_RS19455 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding H5404_RS19455 PF12169 DNA polymerase III subunits gamma and tau domain III H5404_RS19460 PF00156 Phosphoribosyl transferase domain H5404_RS19465 PF04304 Protein of unknown function (DUF454) H5404_RS19470 PF00072 Response regulator receiver domain H5404_RS19475 PF03466 LysR substrate binding domain H5404_RS19475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS19480 PF00156 Phosphoribosyl transferase domain H5404_RS19485 PF02674 Colicin V production protein H5404_RS19490 PF05036 Sporulation related domain H5404_RS19495 PF08245 Mur ligase middle domain H5404_RS19495 PF02875 Mur ligase family, glutamate ligase domain H5404_RS19500 PF17848 Acetyl-coA carboxylase zinc finger domain H5404_RS19500 PF01039 Carboxyl transferase domain H5404_RS19505 PF01416 tRNA pseudouridine synthase H5404_RS19515 PF01118 Semialdehyde dehydrogenase, NAD binding domain H5404_RS19515 PF02774 Semialdehyde dehydrogenase, dimerisation domain H5404_RS19520 PF11890 Domain of unknown function (DUF3410) H5404_RS19520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5404_RS19520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H5404_RS19525 PF00109 Beta-ketoacyl synthase, N-terminal domain H5404_RS19525 PF02801 Beta-ketoacyl synthase, C-terminal domain H5404_RS19530 PF05430 S-adenosyl-L-methionine-dependent methyltransferase H5404_RS19530 PF01266 FAD dependent oxidoreductase H5404_RS19535 PF03358 NADPH-dependent FMN reductase H5404_RS19540 PF08891 YfcL protein H5404_RS19545 PF04315 Elongation factor P hydroxylase H5404_RS19550 PF03458 UPF0126 domain H5404_RS19555 PF01264 Chorismate synthase H5404_RS19560 PF05175 Methyltransferase small domain H5404_RS19565 PF01713 Smr domain H5404_RS19570 PF00300 Histidine phosphatase superfamily (branch 1) H5404_RS19575 PF05193 Peptidase M16 inactive domain H5404_RS19575 PF00675 Insulinase (Peptidase family M16) H5404_RS19575 PF16187 Middle or third domain of peptidase_M16 H5404_RS19585 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain H5404_RS19585 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain H5404_RS19585 PF00378 Enoyl-CoA hydratase/isomerase H5404_RS19590 PF02803 Thiolase, C-terminal domain H5404_RS19590 PF00108 Thiolase, N-terminal domain H5404_RS19595 PF04542 Sigma-70 region 2 H5404_RS19595 PF08281 Sigma-70, region 4 H5404_RS19605 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H5404_RS19610 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H5404_RS19615 PF04333 MlaA lipoprotein H5404_RS19625 PF03918 Cytochrome C biogenesis protein H5404_RS19630 PF08534 Redoxin H5404_RS19635 PF01578 Cytochrome C assembly protein H5404_RS19635 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal H5404_RS19640 PF03100 CcmE H5404_RS19645 PF04995 Heme exporter protein D (CcmD) H5404_RS19650 PF01578 Cytochrome C assembly protein H5404_RS19655 PF03379 CcmB protein H5404_RS19660 PF00005 ABC transporter H5404_RS19670 PF01584 CheW-like domain H5404_RS19680 PF13614 AAA domain H5404_RS19685 PF00072 Response regulator receiver domain H5404_RS19685 PF01339 CheB methylesterase H5404_RS19690 PF01584 CheW-like domain H5404_RS19690 PF02895 Signal transducing histidine kinase, homodimeric domain H5404_RS19690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS19690 PF01627 Hpt domain H5404_RS19690 PF00072 Response regulator receiver domain H5404_RS19695 PF04344 Chemotaxis phosphatase, CheZ H5404_RS19700 PF00072 Response regulator receiver domain H5404_RS19705 PF04542 Sigma-70 region 2 H5404_RS19705 PF04539 Sigma-70 region 3 H5404_RS19705 PF04545 Sigma-70, region 4 H5404_RS19710 PF10609 NUBPL iron-transfer P-loop NTPase H5404_RS19715 PF00448 SRP54-type protein, GTPase domain H5404_RS19720 PF00771 FHIPEP family H5404_RS19725 PF01312 FlhB HrpN YscU SpaS Family H5404_RS19730 PF01311 Bacterial export proteins, family 1 H5404_RS19735 PF01313 Bacterial export proteins, family 3 H5404_RS19740 PF00813 FliP family H5404_RS19745 PF04347 Flagellar biosynthesis protein, FliO H5404_RS19750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H5404_RS19755 PF02154 Flagellar motor switch protein FliM H5404_RS19755 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term H5404_RS19775 PF18269 T3SS EscN ATPase C-terminal domain H5404_RS19775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5404_RS19785 PF01706 FliG C-terminal domain H5404_RS19785 PF14841 FliG middle domain H5404_RS19785 PF14842 FliG N-terminal domain H5404_RS19790 PF01514 Secretory protein of YscJ/FliF family H5404_RS19790 PF08345 Flagellar M-ring protein C-terminal H5404_RS19795 PF02049 Flagellar hook-basal body complex protein FliE H5404_RS19800 PF02954 Bacterial regulatory protein, Fis family H5404_RS19800 PF00158 Sigma-54 interaction domain H5404_RS19800 PF00072 Response regulator receiver domain H5404_RS19805 PF13188 PAS domain H5404_RS19805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS19805 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS19810 PF00158 Sigma-54 interaction domain H5404_RS19810 PF02954 Bacterial regulatory protein, Fis family H5404_RS19810 PF06490 Flagellar regulatory protein FleQ H5404_RS19815 PF02561 Flagellar protein FliS H5404_RS19825 PF02465 Flagellar hook-associated protein 2 N-terminus H5404_RS19825 PF07196 Flagellin hook IN motif H5404_RS19825 PF07195 Flagellar hook-associated protein 2 C-terminus H5404_RS19830 PF03646 FlaG protein H5404_RS19835 PF07196 Flagellin hook IN motif H5404_RS19835 PF00669 Bacterial flagellin N-terminal helical region H5404_RS19835 PF00700 Bacterial flagellin C-terminal helical region H5404_RS19840 PF00700 Bacterial flagellin C-terminal helical region H5404_RS19840 PF07196 Flagellin hook IN motif H5404_RS19840 PF00669 Bacterial flagellin N-terminal helical region H5404_RS19845 PF00700 Bacterial flagellin C-terminal helical region H5404_RS19845 PF07196 Flagellin hook IN motif H5404_RS19845 PF00669 Bacterial flagellin N-terminal helical region H5404_RS19850 PF14706 Transposase DNA-binding H5404_RS19850 PF02281 Transposase Tn5 dimerisation domain H5404_RS19850 PF01609 Transposase DDE domain H5404_RS19855 PF04261 Dyp-type peroxidase family H5404_RS19860 PF11143 Protein of unknown function (DUF2919) H5404_RS19880 PF03960 ArsC family H5404_RS19885 PF01546 Peptidase family M20/M25/M40 H5404_RS19885 PF07687 Peptidase dimerisation domain H5404_RS19900 PF06804 NlpB/DapX lipoprotein H5404_RS19905 PF00701 Dihydrodipicolinate synthetase family H5404_RS19910 PF01842 ACT domain H5404_RS19915 PF00578 AhpC/TSA family H5404_RS19920 PF01594 AI-2E family transporter H5404_RS19930 PF13181 Tetratricopeptide repeat H5404_RS19930 PF01435 Peptidase family M48 H5404_RS19935 PF03960 ArsC family H5404_RS19940 PF03358 NADPH-dependent FMN reductase H5404_RS19955 PF00860 Permease family H5404_RS19965 PF00586 AIR synthase related protein, N-terminal domain H5404_RS19965 PF02769 AIR synthase related protein, C-terminal domain H5404_RS19970 PF00551 Formyl transferase H5404_RS19975 PF13230 Glutamine amidotransferases class-II H5404_RS19980 PF13580 SIS domain H5404_RS19985 PF09317 Domain of unknown function (DUF1974) H5404_RS19985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain H5404_RS19985 PF02770 Acyl-CoA dehydrogenase, middle domain H5404_RS19985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain H5404_RS19990 PF00916 Sulfate permease family H5404_RS19990 PF01740 STAS domain H5404_RS19995 PF00583 Acetyltransferase (GNAT) family H5404_RS20015 PF00929 Exonuclease H5404_RS20020 PF00075 RNase H H5404_RS20025 PF08241 Methyltransferase domain H5404_RS20030 PF00753 Metallo-beta-lactamase superfamily H5404_RS20030 PF16123 Hydroxyacylglutathione hydrolase C-terminus H5404_RS20035 PF01464 Transglycosylase SLT domain H5404_RS20035 PF01476 LysM domain H5404_RS20045 PF03372 Endonuclease/Exonuclease/phosphatase family H5404_RS20050 PF00543 Nitrogen regulatory protein P-II H5404_RS20055 PF00034 Cytochrome c H5404_RS20060 PF09179 TilS substrate binding domain H5404_RS20060 PF11734 TilS substrate C-terminal domain H5404_RS20060 PF01171 PP-loop family H5404_RS20065 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit H5404_RS20070 PF07733 Bacterial DNA polymerase III alpha NTPase domain H5404_RS20070 PF01336 OB-fold nucleic acid binding domain H5404_RS20070 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H5404_RS20070 PF02811 PHP domain H5404_RS20070 PF14579 Helix-hairpin-helix motif H5404_RS20075 PF01351 Ribonuclease HII H5404_RS20080 PF02684 Lipid-A-disaccharide synthetase H5404_RS20085 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_RS20085 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 H5404_RS20090 PF07977 FabA-like domain H5404_RS20095 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD H5404_RS20095 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_RS20100 PF03938 Outer membrane protein (OmpH-like) H5404_RS20105 PF01103 Surface antigen H5404_RS20105 PF07244 Surface antigen variable number repeat H5404_RS20110 PF17820 PDZ domain H5404_RS20110 PF02163 Peptidase family M50 H5404_RS20115 PF13288 DXP reductoisomerase C-terminal domain H5404_RS20115 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase H5404_RS20115 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain H5404_RS20125 PF01255 Putative undecaprenyl diphosphate synthase H5404_RS20130 PF01765 Ribosome recycling factor H5404_RS20135 PF00696 Amino acid kinase family H5404_RS20140 PF00889 Elongation factor TS H5404_RS20145 PF00318 Ribosomal protein S2 H5404_RS20150 PF00557 Metallopeptidase family M24 H5404_RS20155 PF01842 ACT domain H5404_RS20155 PF01909 Nucleotidyltransferase domain H5404_RS20155 PF01966 HD domain H5404_RS20155 PF08335 GlnD PII-uridylyltransferase H5404_RS20160 PF11944 Protein of unknown function (DUF3461) H5404_RS20165 PF00849 RNA pseudouridylate synthase H5404_RS20170 PF04287 tRNA pseudouridine synthase C H5404_RS20195 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 H5404_RS20200 PF03806 AbgT putative transporter family H5404_RS20205 PF00444 Ribosomal protein L36 H5404_RS20210 PF01197 Ribosomal protein L31 H5404_RS20215 PF18389 TrmO C-terminal domain H5404_RS20215 PF01980 tRNA-methyltransferase O H5404_RS20220 PF04073 Aminoacyl-tRNA editing domain H5404_RS20220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) H5404_RS20220 PF03129 Anticodon binding domain H5404_RS20230 PF06786 Uncharacterised protein family (UPF0253) H5404_RS20240 PF00209 Sodium:neurotransmitter symporter family H5404_RS20255 PF03449 Transcription elongation factor, N-terminal H5404_RS20255 PF01272 Transcription elongation factor, GreA/GreB, C-term H5404_RS20260 PF00270 DEAD/DEAH box helicase H5404_RS20260 PF00271 Helicase conserved C-terminal domain H5404_RS20260 PF00570 HRDC domain H5404_RS20260 PF16124 RecQ zinc-binding H5404_RS20260 PF09382 RQC domain H5404_RS20265 PF11798 IMS family HHH motif H5404_RS20265 PF00817 impB/mucB/samB family H5404_RS20265 PF11799 impB/mucB/samB family C-terminal domain H5404_RS20280 PF02424 ApbE family H5404_RS20285 PF00970 Oxidoreductase FAD-binding domain H5404_RS20285 PF00111 2Fe-2S iron-sulfur cluster binding domain H5404_RS20285 PF00175 Oxidoreductase NAD-binding domain H5404_RS20290 PF02508 Rnf-Nqr subunit, membrane protein H5404_RS20295 PF02508 Rnf-Nqr subunit, membrane protein H5404_RS20300 PF04205 FMN-binding domain H5404_RS20305 PF03116 NQR2, RnfD, RnfE family H5404_RS20310 PF11973 NQRA C-terminal domain H5404_RS20310 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) H5404_RS20315 PF01722 BolA-like protein H5404_RS20320 PF05175 Methyltransferase small domain H5404_RS20325 PF03923 Uncharacterized lipoprotein H5404_RS20325 PF08139 Prokaryotic membrane lipoprotein lipid attachment site H5404_RS20330 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD H5404_RS20335 PF07690 Major Facilitator Superfamily H5404_RS20345 PF04545 Sigma-70, region 4 H5404_RS20345 PF04542 Sigma-70 region 2 H5404_RS20360 PF03502 Nucleoside-specific channel-forming protein, Tsx H5404_RS20365 PF02558 Ketopantoate reductase PanE/ApbA H5404_RS20365 PF08546 Ketopantoate reductase PanE/ApbA C terminal H5404_RS20370 PF01965 DJ-1/PfpI family H5404_RS20375 PF00266 Aminotransferase class-V H5404_RS20380 PF17158 Membrane-associated sensor, integral membrane domain H5404_RS20380 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS20385 PF02657 Fe-S metabolism associated domain H5404_RS20390 PF00899 ThiF family H5404_RS20395 PF03562 MltA specific insert domain H5404_RS20395 PF06725 3D domain H5404_RS20405 PF00583 Acetyltransferase (GNAT) family H5404_RS20405 PF00696 Amino acid kinase family H5404_RS20415 PF13538 UvrD-like helicase C-terminal domain H5404_RS20420 PF00580 UvrD/REP helicase N-terminal domain H5404_RS20420 PF12705 PD-(D/E)XK nuclease superfamily H5404_RS20420 PF13361 UvrD-like helicase C-terminal domain H5404_RS20425 PF17946 RecC C-terminal domain H5404_RS20430 PF00884 Sulfatase H5404_RS20430 PF11893 Domain of unknown function (DUF3413) H5404_RS20440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS20440 PF03466 LysR substrate binding domain H5404_RS20445 PF07130 YebG protein H5404_RS20450 PF14602 Hexapeptide repeat of succinyl-transferase H5404_RS20450 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle H5404_RS20455 PF03009 Glycerophosphoryl diester phosphodiesterase family H5404_RS20460 PF07690 Major Facilitator Superfamily H5404_RS20465 PF00230 Major intrinsic protein H5404_RS20470 PF00370 FGGY family of carbohydrate kinases, N-terminal domain H5404_RS20470 PF02782 FGGY family of carbohydrate kinases, C-terminal domain H5404_RS20475 PF00455 DeoR C terminal sensor domain H5404_RS20475 PF08220 DeoR-like helix-turn-helix domain H5404_RS20480 PF01266 FAD dependent oxidoreductase H5404_RS20480 PF16901 C-terminal domain of alpha-glycerophosphate oxidase H5404_RS20485 PF01544 CorA-like Mg2+ transporter protein H5404_RS20505 PF01588 Putative tRNA binding domain H5404_RS20510 PF00356 Bacterial regulatory proteins, lacI family H5404_RS20515 PF00929 Exonuclease H5404_RS20515 PF17657 Bacterial DNA polymerase III alpha subunit finger domain H5404_RS20515 PF14579 Helix-hairpin-helix motif H5404_RS20515 PF07733 Bacterial DNA polymerase III alpha NTPase domain H5404_RS20515 PF02811 PHP domain H5404_RS20525 PF00474 Sodium:solute symporter family H5404_RS20530 PF01263 Aldose 1-epimerase H5404_RS20535 PF10509 Galactokinase galactose-binding signature H5404_RS20535 PF08544 GHMP kinases C terminal H5404_RS20535 PF00288 GHMP kinases N terminal domain H5404_RS20540 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain H5404_RS20540 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain H5404_RS20545 PF16363 GDP-mannose 4,6 dehydratase H5404_RS20550 PF00356 Bacterial regulatory proteins, lacI family H5404_RS20555 PF16353 Domain of unknown function(DUF4981) H5404_RS20555 PF02837 Glycosyl hydrolases family 2, sugar binding domain H5404_RS20555 PF00703 Glycosyl hydrolases family 2 H5404_RS20555 PF02836 Glycosyl hydrolases family 2, TIM barrel domain H5404_RS20555 PF02929 Beta galactosidase small chain H5404_RS20560 PF04074 YhcH/YjgK/YiaL H5404_RS20565 PF13520 Amino acid permease H5404_RS20570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS20570 PF03466 LysR substrate binding domain H5404_RS20600 PF00437 Type II/IV secretion system protein H5404_RS20630 PF04972 BON domain H5404_RS20630 PF00263 Bacterial type II and III secretion system protein H5404_RS20630 PF13629 Pilus formation protein N terminal region H5404_RS20655 PF12833 Helix-turn-helix domain H5404_RS20655 PF02805 Metal binding domain of Ada H5404_RS20660 PF00501 AMP-binding enzyme H5404_RS20670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS20670 PF03466 LysR substrate binding domain H5404_RS20675 PF00679 Elongation factor G C-terminus H5404_RS20675 PF00009 Elongation factor Tu GTP binding domain H5404_RS20675 PF03764 Elongation factor G, domain IV H5404_RS20675 PF14492 Elongation Factor G, domain II H5404_RS20675 PF03144 Elongation factor Tu domain 2 H5404_RS20680 PF18073 Rubredoxin metal binding domain H5404_RS20690 PF18429 Domain of unknown function (DUF5609) H5404_RS20700 PF01048 Phosphorylase superfamily H5404_RS20705 PF01676 Metalloenzyme superfamily H5404_RS20710 PF00591 Glycosyl transferase family, a/b domain H5404_RS20710 PF02885 Glycosyl transferase family, helical bundle domain H5404_RS20710 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain H5404_RS20715 PF01791 DeoC/LacD family aldolase H5404_RS20720 PF07670 Nucleoside recognition H5404_RS20720 PF07662 Na+ dependent nucleoside transporter C-terminus H5404_RS20720 PF01773 Na+ dependent nucleoside transporter N-terminus H5404_RS20725 PF01026 TatD related DNase H5404_RS20735 PF16658 Class II release factor RF3, C-terminal domain H5404_RS20735 PF00009 Elongation factor Tu GTP binding domain H5404_RS20735 PF03144 Elongation factor Tu domain 2 H5404_RS20755 PF13508 Acetyltransferase (GNAT) domain H5404_RS20760 PF02036 SCP-2 sterol transfer family H5404_RS20765 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS20765 PF03707 Bacterial signalling protein N terminal repeat H5404_RS20765 PF00563 EAL domain H5404_RS20770 PF01136 Peptidase family U32 H5404_RS20775 PF01136 Peptidase family U32 H5404_RS20780 PF01554 MatE H5404_RS20790 PF13181 Tetratricopeptide repeat H5404_RS20790 PF07719 Tetratricopeptide repeat H5404_RS20795 PF03725 3' exoribonuclease family, domain 2 H5404_RS20795 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain H5404_RS20795 PF01138 3' exoribonuclease family, domain 1 H5404_RS20795 PF00013 KH domain H5404_RS20795 PF00575 S1 RNA binding domain H5404_RS20800 PF00312 Ribosomal protein S15 H5404_RS20805 PF01509 TruB family pseudouridylate synthase (N terminal domain) H5404_RS20805 PF16198 tRNA pseudouridylate synthase B C-terminal domain H5404_RS20805 PF09157 Pseudouridine synthase II TruB, C-terminal H5404_RS20810 PF02033 Ribosome-binding factor A H5404_RS20815 PF00009 Elongation factor Tu GTP binding domain H5404_RS20815 PF11987 Translation-initiation factor 2 H5404_RS20815 PF08364 Bacterial translation initiation factor IF-2 associated region H5404_RS20815 PF04760 Translation initiation factor IF-2, N-terminal region H5404_RS20820 PF13184 NusA-like KH domain H5404_RS20820 PF08529 NusA N-terminal domain H5404_RS20820 PF00575 S1 RNA binding domain H5404_RS20825 PF02576 RimP N-terminal domain H5404_RS20825 PF17384 RimP C-terminal SH3 domain H5404_RS20840 PF03840 Preprotein translocase SecG subunit H5404_RS20845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H5404_RS20845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H5404_RS20845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H5404_RS20845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H5404_RS20850 PF00809 Pterin binding enzyme H5404_RS20855 PF00004 ATPase family associated with various cellular activities (AAA) H5404_RS20855 PF01434 Peptidase family M41 H5404_RS20855 PF06480 FtsH Extracellular H5404_RS20855 PF17862 AAA+ lid domain H5404_RS20860 PF01728 FtsJ-like methyltransferase H5404_RS20865 PF01985 CRS1 / YhbY (CRM) domain H5404_RS20870 PF03449 Transcription elongation factor, N-terminal H5404_RS20870 PF01272 Transcription elongation factor, GreA/GreB, C-term H5404_RS20875 PF13609 Gram-negative porin H5404_RS20880 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family H5404_RS20890 PF00579 tRNA synthetases class I (W and Y) H5404_RS20895 PF01551 Peptidase family M23 H5404_RS20895 PF01476 LysM domain H5404_RS20895 PF08525 Opacity-associated protein A N-terminal motif H5404_RS20900 PF00873 AcrB/AcrD/AcrF family H5404_RS20910 PF01521 Iron-sulphur cluster biosynthesis H5404_RS20915 PF00202 Aminotransferase class-III H5404_RS20920 PF01594 AI-2E family transporter H5404_RS20925 PF08468 Methyltransferase small domain N-terminal H5404_RS20925 PF05175 Methyltransferase small domain H5404_RS20930 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_RS20930 PF00072 Response regulator receiver domain H5404_RS20930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS20930 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS20935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle H5404_RS20940 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS20945 PF12911 N-terminal TM domain of oligopeptide transport permease C H5404_RS20945 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS20950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS20950 PF00005 ABC transporter H5404_RS20955 PF00005 ABC transporter H5404_RS20955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region H5404_RS20965 PF01869 BadF/BadG/BcrA/BcrD ATPase family H5404_RS20970 PF02838 Glycosyl hydrolase family 20, domain 2 H5404_RS20970 PF00728 Glycosyl hydrolase family 20, catalytic domain H5404_RS20975 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain H5404_RS20975 PF06165 Glycosyltransferase family 36 H5404_RS20980 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II H5404_RS20980 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain H5404_RS20980 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I H5404_RS20980 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III H5404_RS20985 PF08402 TOBE domain H5404_RS20985 PF00005 ABC transporter H5404_RS20995 PF13416 Bacterial extracellular solute-binding protein H5404_RS21000 PF00909 Ammonium Transporter Family H5404_RS21005 PF00543 Nitrogen regulatory protein P-II H5404_RS21010 PF06062 Uncharacterised protein family (UPF0231) H5404_RS21015 PF06434 Aconitate hydratase 2 N-terminus H5404_RS21015 PF00330 Aconitase family (aconitate hydratase) H5404_RS21015 PF11791 Aconitate B N-terminal domain H5404_RS21020 PF01734 Patatin-like phospholipase H5404_RS21025 PF14814 Bifunctional transglycosylase second domain H5404_RS21025 PF00905 Penicillin binding protein transpeptidase domain H5404_RS21025 PF00912 Transglycosylase H5404_RS21030 PF04408 Helicase associated domain (HA2) H5404_RS21030 PF00271 Helicase conserved C-terminal domain H5404_RS21030 PF08482 ATP-dependent helicase C-terminal H5404_RS21030 PF00270 DEAD/DEAH box helicase H5404_RS21035 PF17746 SfsA N-terminal OB domain H5404_RS21035 PF03749 Sugar fermentation stimulation protein RE domain H5404_RS21040 PF01258 Prokaryotic dksA/traR C4-type zinc finger H5404_RS21045 PF00749 tRNA synthetases class I (E and Q), catalytic domain H5404_RS21050 PF01743 Poly A polymerase head domain H5404_RS21050 PF12626 Polymerase A arginine-rich C-terminus H5404_RS21050 PF12627 Probable RNA and SrmB- binding site of polymerase A H5404_RS21055 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) H5404_RS21060 PF02548 Ketopantoate hydroxymethyltransferase H5404_RS21065 PF02569 Pantoate-beta-alanine ligase H5404_RS21070 PF03279 Bacterial lipid A biosynthesis acyltransferase H5404_RS21075 PF01061 ABC-2 type transporter H5404_RS21080 PF00005 ABC transporter H5404_RS21085 PF00916 Sulfate permease family H5404_RS21085 PF01740 STAS domain H5404_RS21090 PF00484 Carbonic anhydrase H5404_RS21095 PF00156 Phosphoribosyl transferase domain H5404_RS21100 PF00440 Bacterial regulatory proteins, tetR family H5404_RS21105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H5404_RS21105 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS21110 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) H5404_RS21110 PF00364 Biotin-requiring enzyme H5404_RS21110 PF02817 e3 binding domain H5404_RS21115 PF17831 Pyruvate dehydrogenase E1 component middle domain H5404_RS21115 PF00456 Transketolase, thiamine diphosphate binding domain H5404_RS21120 PF00392 Bacterial regulatory proteins, gntR family H5404_RS21120 PF07729 FCD domain H5404_RS21125 PF01510 N-acetylmuramoyl-L-alanine amidase H5404_RS21130 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain H5404_RS21130 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain H5404_RS21140 PF00437 Type II/IV secretion system protein H5404_RS21140 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H5404_RS21145 PF00482 Type II secretion system (T2SS), protein F H5404_RS21150 PF01478 Type IV leader peptidase family H5404_RS21150 PF06750 Bacterial Peptidase A24 N-terminal domain H5404_RS21155 PF01121 Dephospho-CoA kinase H5404_RS21160 PF07072 Cell division protein H5404_RS21165 PF03884 DNA gyrase inhibitor YacG H5404_RS21170 PF01245 Ribosomal protein L19 H5404_RS21175 PF01746 tRNA (Guanine-1)-methyltransferase H5404_RS21180 PF01782 RimM N-terminal domain H5404_RS21180 PF05239 PRC-barrel domain H5404_RS21185 PF00886 Ribosomal protein S16 H5404_RS21190 PF00448 SRP54-type protein, GTPase domain H5404_RS21190 PF02881 SRP54-type protein, helical bundle domain H5404_RS21190 PF02978 Signal peptide binding domain H5404_RS21195 PF01578 Cytochrome C assembly protein H5404_RS21200 PF00571 CBS domain H5404_RS21200 PF01595 Cyclin M transmembrane N-terminal domain H5404_RS21200 PF03471 Transporter associated domain H5404_RS21205 PF02664 S-Ribosylhomocysteinase (LuxS) H5404_RS21215 PF04262 Glutamate-cysteine ligase H5404_RS21220 PF05193 Peptidase M16 inactive domain H5404_RS21220 PF00675 Insulinase (Peptidase family M16) H5404_RS21225 PF09335 SNARE associated Golgi protein H5404_RS21230 PF08240 Alcohol dehydrogenase GroES-like domain H5404_RS21230 PF00107 Zinc-binding dehydrogenase H5404_RS21235 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit H5404_RS21240 PF00364 Biotin-requiring enzyme H5404_RS21240 PF00682 HMGL-like H5404_RS21240 PF02436 Conserved carboxylase domain H5404_RS21245 PF04277 Oxaloacetate decarboxylase, gamma chain H5404_RS21300 PF02599 Global regulator protein family H5404_RS21305 PF00696 Amino acid kinase family H5404_RS21305 PF13840 ACT domain H5404_RS21305 PF01842 ACT domain H5404_RS21310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain H5404_RS21310 PF02272 DHHA1 domain H5404_RS21310 PF01411 tRNA synthetases class II (A) H5404_RS21315 PF02631 RecX family H5404_RS21320 PF00154 recA bacterial DNA recombination protein H5404_RS21325 PF02464 Competence-damaged protein H5404_RS21330 PF05188 MutS domain II H5404_RS21330 PF01624 MutS domain I H5404_RS21330 PF05192 MutS domain III H5404_RS21330 PF00488 MutS domain V H5404_RS21330 PF05190 MutS family domain IV H5404_RS21335 PF04542 Sigma-70 region 2 H5404_RS21335 PF04545 Sigma-70, region 4 H5404_RS21335 PF04539 Sigma-70 region 3 H5404_RS21335 PF00140 Sigma-70 factor, region 1.2 H5404_RS21340 PF01551 Peptidase family M23 H5404_RS21340 PF01476 LysM domain H5404_RS21350 PF01975 Survival protein SurE H5404_RS21355 PF01142 tRNA pseudouridine synthase D (TruD) H5404_RS21360 PF02542 YgbB family H5404_RS21365 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase H5404_RS21370 PF04977 Septum formation initiator H5404_RS21375 PF03952 Enolase, N-terminal domain H5404_RS21375 PF00113 Enolase, C-terminal TIM barrel domain H5404_RS21380 PF00117 Glutamine amidotransferase class-I H5404_RS21380 PF06418 CTP synthase N-terminus H5404_RS21385 PF03819 MazG nucleotide pyrophosphohydrolase domain H5404_RS21390 PF02824 TGS domain H5404_RS21390 PF04607 Region found in RelA / SpoT proteins H5404_RS21390 PF13291 ACT domain H5404_RS21395 PF01938 TRAM domain H5404_RS21395 PF05958 tRNA (Uracil-5-)-methyltransferase H5404_RS21400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS21400 PF00072 Response regulator receiver domain H5404_RS21400 PF00672 HAMP domain H5404_RS21400 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) H5404_RS21400 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS21400 PF01627 Hpt domain H5404_RS21405 PF01648 4'-phosphopantetheinyl transferase superfamily H5404_RS21410 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ H5404_RS21415 PF11967 Recombination protein O N terminal H5404_RS21415 PF02565 Recombination protein O C terminal H5404_RS21420 PF01926 50S ribosome-binding GTPase H5404_RS21420 PF07650 KH domain H5404_RS21425 PF14622 Ribonuclease-III-like H5404_RS21425 PF00035 Double-stranded RNA binding motif H5404_RS21430 PF10502 Signal peptidase, peptidase S26 H5404_RS21435 PF03144 Elongation factor Tu domain 2 H5404_RS21435 PF06421 GTP-binding protein LepA C-terminus H5404_RS21435 PF00009 Elongation factor Tu GTP binding domain H5404_RS21435 PF00679 Elongation factor G C-terminus H5404_RS21445 PF03888 MucB/RseB N-terminal domain H5404_RS21445 PF17188 MucB/RseB C-terminal domain H5404_RS21450 PF03873 Anti sigma-E protein RseA, C-terminal domain H5404_RS21450 PF03872 Anti sigma-E protein RseA, N-terminal domain H5404_RS21455 PF08281 Sigma-70, region 4 H5404_RS21455 PF04542 Sigma-70 region 2 H5404_RS21460 PF00890 FAD binding domain H5404_RS21460 PF02910 Fumarate reductase flavoprotein C-term H5404_RS21465 PF03937 Flavinator of succinate dehydrogenase H5404_RS21470 PF01571 Aminomethyltransferase folate-binding domain H5404_RS21485 PF01494 FAD binding domain H5404_RS21490 PF01494 FAD binding domain H5404_RS21495 PF03695 Uncharacterised protein family (UPF0149) H5404_RS21500 PF05164 Cell division protein ZapA H5404_RS21510 PF01812 5-formyltetrahydrofolate cyclo-ligase family H5404_RS21515 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) H5404_RS21520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H5404_RS21520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5404_RS21520 PF01842 ACT domain H5404_RS21525 PF04402 Protein of unknown function (DUF541) H5404_RS21530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS21530 PF03466 LysR substrate binding domain H5404_RS21535 PF01810 LysE type translocator H5404_RS21540 PF04073 Aminoacyl-tRNA editing domain H5404_RS21545 PF00924 Mechanosensitive ion channel H5404_RS21545 PF05552 Conserved TM helix H5404_RS21550 PF01116 Fructose-bisphosphate aldolase class-II H5404_RS21555 PF00162 Phosphoglycerate kinase H5404_RS21560 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H5404_RS21560 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H5404_RS21565 PF00593 TonB dependent receptor H5404_RS21565 PF07715 TonB-dependent Receptor Plug Domain H5404_RS21570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS21570 PF03466 LysR substrate binding domain H5404_RS21575 PF00456 Transketolase, thiamine diphosphate binding domain H5404_RS21575 PF02779 Transketolase, pyrimidine binding domain H5404_RS21575 PF02780 Transketolase, C-terminal domain H5404_RS21580 PF00438 S-adenosylmethionine synthetase, N-terminal domain H5404_RS21580 PF02773 S-adenosylmethionine synthetase, C-terminal domain H5404_RS21580 PF02772 S-adenosylmethionine synthetase, central domain H5404_RS21590 PF10263 SprT-like family H5404_RS21590 PF17283 SprT-like zinc ribbon domain H5404_RS21595 PF04231 Endonuclease I H5404_RS21600 PF04452 RNA methyltransferase H5404_RS21605 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain H5404_RS21605 PF02951 Prokaryotic glutathione synthetase, N-terminal domain H5404_RS21610 PF02622 Uncharacterized ACR, COG1678 H5404_RS21615 PF03652 Holliday junction resolvase H5404_RS21620 PF00437 Type II/IV secretion system protein H5404_RS21625 PF00437 Type II/IV secretion system protein H5404_RS21630 PF01168 Alanine racemase, N-terminal domain H5404_RS21635 PF14748 Pyrroline-5-carboxylate reductase dimerisation H5404_RS21635 PF03807 NADP oxidoreductase coenzyme F420-dependent H5404_RS21640 PF02325 YGGT family H5404_RS21645 PF02594 Uncharacterised ACR, YggU family COG1872 H5404_RS21655 PF01725 Ham1 family H5404_RS21660 PF04055 Radical SAM superfamily H5404_RS21660 PF06969 HemN C-terminal domain H5404_RS21665 PF04960 Glutaminase H5404_RS21670 PF02086 D12 class N6 adenine-specific DNA methyltransferase H5404_RS21675 PF02390 Putative methyltransferase H5404_RS21680 PF14815 NUDIX domain H5404_RS21680 PF00730 HhH-GPD superfamily base excision DNA repair protein H5404_RS21680 PF00633 Helix-hairpin-helix motif H5404_RS21685 PF04362 Bacterial Fe(2+) trafficking H5404_RS21690 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain H5404_RS21690 PF01464 Transglycosylase SLT domain H5404_RS21730 PF00672 HAMP domain H5404_RS21730 PF17200 Single Cache domain 2 H5404_RS21730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS21760 PF00171 Aldehyde dehydrogenase family H5404_RS21805 PF00072 Response regulator receiver domain H5404_RS21810 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family H5404_RS21810 PF00356 Bacterial regulatory proteins, lacI family H5404_RS21815 PF04794 YdjC-like protein H5404_RS21820 PF02056 Family 4 glycosyl hydrolase H5404_RS21820 PF11975 Family 4 glycosyl hydrolase C-terminal domain H5404_RS21825 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit H5404_RS21830 PF02378 Phosphotransferase system, EIIC H5404_RS21835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit H5404_RS21840 PF01522 Polysaccharide deacetylase H5404_RS21850 PF00106 short chain dehydrogenase H5404_RS21855 PF10011 Predicted membrane protein (DUF2254) H5404_RS21865 PF03739 Lipopolysaccharide export system permease LptF/LptG H5404_RS21870 PF03739 Lipopolysaccharide export system permease LptF/LptG H5404_RS21875 PF02789 Cytosol aminopeptidase family, N-terminal domain H5404_RS21875 PF00883 Cytosol aminopeptidase family, catalytic domain H5404_RS21880 PF04364 DNA polymerase III chi subunit, HolC H5404_RS21885 PF08264 Anticodon-binding domain of tRNA H5404_RS21885 PF10458 Valyl tRNA synthetase tRNA binding arm H5404_RS21885 PF00133 tRNA synthetases class I (I, L, M and V) H5404_RS21895 PF00583 Acetyltransferase (GNAT) family H5404_RS21905 PF06877 Regulator of ribonuclease activity B H5404_RS21915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain H5404_RS21915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain H5404_RS21925 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain H5404_RS21925 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain H5404_RS21930 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain H5404_RS21930 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain H5404_RS21935 PF01042 Endoribonuclease L-PSP H5404_RS21940 PF01553 Acyltransferase H5404_RS21945 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) H5404_RS21950 PF01722 BolA-like protein H5404_RS21960 PF05494 MlaC protein H5404_RS21965 PF02470 MlaD protein H5404_RS21970 PF02405 Permease MlaE H5404_RS21975 PF00005 ABC transporter H5404_RS21980 PF01699 Sodium/calcium exchanger protein H5404_RS21985 PF00571 CBS domain H5404_RS21985 PF01380 SIS domain H5404_RS21995 PF03968 OstA-like protein H5404_RS22000 PF12399 Branched-chain amino acid ATP-binding cassette transporter H5404_RS22000 PF00005 ABC transporter H5404_RS22005 PF04963 Sigma-54 factor, core binding domain H5404_RS22005 PF04552 Sigma-54, DNA binding domain H5404_RS22005 PF00309 Sigma-54 factor, Activator interacting domain (AID) H5404_RS22010 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein H5404_RS22015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 H5404_RS22020 PF03668 P-loop ATPase protein family H5404_RS22025 PF00381 PTS HPr component phosphorylation site H5404_RS22030 PF00571 CBS domain H5404_RS22030 PF03448 MgtE intracellular N domain H5404_RS22030 PF01769 Divalent cation transporter H5404_RS22035 PF01523 Putative modulator of DNA gyrase H5404_RS22040 PF04751 Protein of unknown function (DUF615) H5404_RS22045 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5404_RS22045 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain H5404_RS22050 PF00849 RNA pseudouridylate synthase H5404_RS22060 PF00176 SNF2 family N-terminal domain H5404_RS22060 PF12137 RNA polymerase recycling family C-terminal H5404_RS22060 PF18339 RapA N-terminal Tudor like domain 1 H5404_RS22060 PF18337 RapA N-terminal Tudor like domain H5404_RS22060 PF00271 Helicase conserved C-terminal domain H5404_RS22065 PF13638 PIN domain H5404_RS22065 PF02562 PhoH-like protein H5404_RS22070 PF01523 Putative modulator of DNA gyrase H5404_RS22075 PF00795 Carbon-nitrogen hydrolase H5404_RS22080 PF13502 AsmA-like C-terminal region H5404_RS22080 PF13116 Protein of unknown function H5404_RS22085 PF10150 Ribonuclease E/G family H5404_RS22085 PF00575 S1 RNA binding domain H5404_RS22090 PF02545 Maf-like protein H5404_RS22095 PF04093 rod shape-determining protein MreD H5404_RS22100 PF04085 rod shape-determining protein MreC H5404_RS22140 PF07963 Prokaryotic N-terminal methylation motif H5404_RS22150 PF00482 Type II secretion system (T2SS), protein F H5404_RS22155 PF00437 Type II/IV secretion system protein H5404_RS22155 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain H5404_RS22165 PF01471 Putative peptidoglycan binding domain H5404_RS22165 PF13401 AAA domain H5404_RS22170 PF07660 Secretin and TonB N terminus short domain H5404_RS22170 PF03958 Bacterial type II/III secretion system short domain H5404_RS22170 PF00263 Bacterial type II and III secretion system protein H5404_RS22170 PF11741 AMIN domain H5404_RS22190 PF17157 Gammaproteobacterial periplasmic sensor domain H5404_RS22190 PF00563 EAL domain H5404_RS22190 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS22195 PF00436 Single-strand binding protein family H5404_RS22200 PF00196 Bacterial regulatory proteins, luxR family H5404_RS22205 PF00483 Nucleotidyl transferase H5404_RS22210 PF17760 UvrA interaction domain H5404_RS22210 PF00005 ABC transporter H5404_RS22210 PF17755 UvrA DNA-binding domain H5404_RS22220 PF00266 Aminotransferase class-V H5404_RS22225 PF00696 Amino acid kinase family H5404_RS22225 PF01842 ACT domain H5404_RS22230 PF02310 B12 binding domain H5404_RS22230 PF02965 Vitamin B12 dependent methionine synthase, activation domain H5404_RS22230 PF00809 Pterin binding enzyme H5404_RS22230 PF02607 B12 binding domain H5404_RS22230 PF02574 Homocysteine S-methyltransferase H5404_RS22235 PF00999 Sodium/hydrogen exchanger family H5404_RS22245 PF13358 DDE superfamily endonuclease H5404_RS22330 PF01507 Phosphoadenosine phosphosulfate reductase family H5404_RS22335 PF01077 Nitrite and sulphite reductase 4Fe-4S domain H5404_RS22335 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain H5404_RS22340 PF00258 Flavodoxin H5404_RS22340 PF00667 FAD binding domain H5404_RS22340 PF00175 Oxidoreductase NAD-binding domain H5404_RS22360 PF01207 Dihydrouridine synthase (Dus) H5404_RS22470 PF13958 Toxin ToxN, type III toxin-antitoxin system H5404_RS22475 PF01475 Ferric uptake regulator family H5404_RS22485 PF00342 Phosphoglucose isomerase H5404_RS22490 PF01894 Uncharacterised protein family UPF0047 H5404_RS22500 PF00842 Alanine racemase, C-terminal domain H5404_RS22500 PF01168 Alanine racemase, N-terminal domain H5404_RS22505 PF00772 DnaB-like helicase N terminal domain H5404_RS22505 PF03796 DnaB-like helicase C terminal domain H5404_RS22515 PF01281 Ribosomal protein L9, N-terminal domain H5404_RS22515 PF03948 Ribosomal protein L9, C-terminal domain H5404_RS22520 PF01084 Ribosomal protein S18 H5404_RS22525 PF00436 Single-strand binding protein family H5404_RS22530 PF01250 Ribosomal protein S6 H5404_RS22535 PF00834 Ribulose-phosphate 3 epimerase family H5404_RS22540 PF02086 D12 class N6 adenine-specific DNA methyltransferase H5404_RS22550 PF01761 3-dehydroquinate synthase H5404_RS22555 PF01202 Shikimate kinase H5404_RS22560 PF03958 Bacterial type II/III secretion system short domain H5404_RS22560 PF07660 Secretin and TonB N terminus short domain H5404_RS22560 PF00263 Bacterial type II and III secretion system protein H5404_RS22560 PF11741 AMIN domain H5404_RS22565 PF04351 Pilus assembly protein, PilP H5404_RS22575 PF05137 Fimbrial assembly protein (PilN) H5404_RS22585 PF17092 Penicillin-binding protein OB-like domain H5404_RS22585 PF00912 Transglycosylase H5404_RS22585 PF00905 Penicillin binding protein transpeptidase domain H5404_RS22590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS22590 PF03466 LysR substrate binding domain H5404_RS22595 PF08534 Redoxin H5404_RS22595 PF00462 Glutaredoxin H5404_RS22605 PF00206 Lyase H5404_RS22605 PF14698 Argininosuccinate lyase C-terminal H5404_RS22605 PF00583 Acetyltransferase (GNAT) family H5404_RS22610 PF00764 Arginosuccinate synthase H5404_RS22615 PF00696 Amino acid kinase family H5404_RS22620 PF02774 Semialdehyde dehydrogenase, dimerisation domain H5404_RS22620 PF01118 Semialdehyde dehydrogenase, NAD binding domain H5404_RS22625 PF07687 Peptidase dimerisation domain H5404_RS22625 PF01546 Peptidase family M20/M25/M40 H5404_RS22630 PF00311 Phosphoenolpyruvate carboxylase H5404_RS22640 PF02219 Methylenetetrahydrofolate reductase H5404_RS22645 PF00696 Amino acid kinase family H5404_RS22645 PF00742 Homoserine dehydrogenase H5404_RS22645 PF03447 Homoserine dehydrogenase, NAD binding domain H5404_RS22650 PF01053 Cys/Met metabolism PLP-dependent enzyme H5404_RS22655 PF01340 Met Apo-repressor, MetJ H5404_RS22660 PF03949 Malic enzyme, NAD binding domain H5404_RS22660 PF00390 Malic enzyme, N-terminal domain H5404_RS22665 PF00210 Ferritin-like domain H5404_RS22670 PF04324 BFD-like [2Fe-2S] binding domain H5404_RS22675 PF03143 Elongation factor Tu C-terminal domain H5404_RS22675 PF03144 Elongation factor Tu domain 2 H5404_RS22675 PF00009 Elongation factor Tu GTP binding domain H5404_RS22680 PF00009 Elongation factor Tu GTP binding domain H5404_RS22680 PF03764 Elongation factor G, domain IV H5404_RS22680 PF03144 Elongation factor Tu domain 2 H5404_RS22680 PF14492 Elongation Factor G, domain II H5404_RS22680 PF00679 Elongation factor G C-terminus H5404_RS22685 PF00177 Ribosomal protein S7p/S5e H5404_RS22690 PF00164 Ribosomal protein S12/S23 H5404_RS22695 PF04077 DsrH like protein H5404_RS22700 PF02635 DsrE/DsrF-like family H5404_RS22705 PF02635 DsrE/DsrF-like family H5404_RS22710 PF13309 HTH domain H5404_RS22710 PF08348 YheO-like PAS domain H5404_RS22715 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase H5404_RS22715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5404_RS22725 PF04102 SlyX H5404_RS22730 PF01112 Asparaginase H5404_RS22735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase H5404_RS22745 PF00999 Sodium/hydrogen exchanger family H5404_RS22745 PF02254 TrkA-N domain H5404_RS22750 PF02525 Flavodoxin-like fold H5404_RS22755 PF00005 ABC transporter H5404_RS22755 PF12848 ABC transporter H5404_RS22765 PF00561 alpha/beta hydrolase fold H5404_RS22770 PF06794 Uncharacterised protein family (UPF0270) H5404_RS22775 PF00485 Phosphoribulokinase / Uridine kinase family H5404_RS22780 PF00027 Cyclic nucleotide-binding domain H5404_RS22780 PF13545 Crp-like helix-turn-helix domain H5404_RS22790 PF00171 Aldehyde dehydrogenase family H5404_RS22795 PF04958 Arginine N-succinyltransferase beta subunit H5404_RS22800 PF00202 Aminotransferase class-III H5404_RS22805 PF00117 Glutamine amidotransferase class-I H5404_RS22820 PF00579 tRNA synthetases class I (W and Y) H5404_RS22825 PF13419 Haloacid dehalogenase-like hydrolase H5404_RS22830 PF08032 RNA 2'-O ribose methyltransferase substrate binding H5404_RS22830 PF00588 SpoU rRNA Methylase family H5404_RS22835 PF17876 Cold shock domain H5404_RS22835 PF00575 S1 RNA binding domain H5404_RS22835 PF08461 Ribonuclease R winged-helix domain H5404_RS22835 PF08206 Ribonuclease B OB domain H5404_RS22835 PF00773 RNB domain H5404_RS22840 PF02082 Transcriptional regulator H5404_RS22845 PF00970 Oxidoreductase FAD-binding domain H5404_RS22845 PF00042 Globin H5404_RS22845 PF00175 Oxidoreductase NAD-binding domain H5404_RS22850 PF08238 Sel1 repeat H5404_RS22855 PF00709 Adenylosuccinate synthetase H5404_RS22860 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) H5404_RS22865 PF01145 SPFH domain / Band 7 family H5404_RS22870 PF12221 Bacterial membrane protein N terminal H5404_RS22870 PF01145 SPFH domain / Band 7 family H5404_RS22875 PF01926 50S ribosome-binding GTPase H5404_RS22875 PF16360 GTP-binding GTPase Middle Region H5404_RS22875 PF13167 GTP-binding GTPase N-terminal H5404_RS22880 PF17209 Hfq protein H5404_RS22890 PF01119 DNA mismatch repair protein, C-terminal domain H5404_RS22890 PF08676 MutL C terminal dimerisation domain H5404_RS22895 PF01520 N-acetylmuramoyl-L-alanine amidase H5404_RS22900 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE H5404_RS22905 PF08331 Domain of unknown function (DUF1730) H5404_RS22975 PF00929 Exonuclease H5404_RS22980 PF03193 RsgA GTPase H5404_RS22985 PF02666 Phosphatidylserine decarboxylase H5404_RS22990 PF00939 Sodium:sulfate symporter transmembrane region H5404_RS22995 PF00672 HAMP domain H5404_RS22995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain H5404_RS23005 PF01676 Metalloenzyme superfamily H5404_RS23005 PF06415 BPG-independent PGAM N-terminus (iPGM_N) H5404_RS23010 PF00581 Rhodanese-like domain H5404_RS23015 PF02556 Preprotein translocase subunit SecB H5404_RS23020 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus H5404_RS23020 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus H5404_RS23025 PF06426 Serine acetyltransferase, N-terminal H5404_RS23025 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_RS23030 PF01551 Peptidase family M23 H5404_RS23040 PF00440 Bacterial regulatory proteins, tetR family H5404_RS23040 PF08360 QacR-like protein, C-terminal region H5404_RS23050 PF00152 tRNA synthetases class II (D, K and N) H5404_RS23055 PF02910 Fumarate reductase flavoprotein C-term H5404_RS23055 PF00890 FAD binding domain H5404_RS23060 PF13085 2Fe-2S iron-sulfur cluster binding domain H5404_RS23060 PF13183 4Fe-4S dicluster domain H5404_RS23065 PF02300 Fumarate reductase subunit C H5404_RS23070 PF02313 Fumarate reductase subunit D H5404_RS23080 PF08207 Elongation factor P (EF-P) KOW-like domain H5404_RS23080 PF09285 Elongation factor P, C-terminal H5404_RS23080 PF01132 Elongation factor P (EF-P) OB domain H5404_RS23085 PF04055 Radical SAM superfamily H5404_RS23090 PF00842 Alanine racemase, C-terminal domain H5404_RS23090 PF01168 Alanine racemase, N-terminal domain H5404_RS23095 PF02308 MgtC family H5404_RS23105 PF00118 TCP-1/cpn60 chaperonin family H5404_RS23110 PF00166 Chaperonin 10 Kd subunit H5404_RS23115 PF01554 MatE H5404_RS23120 PF00365 Phosphofructokinase H5404_RS23125 PF01545 Cation efflux family H5404_RS23125 PF16916 Dimerisation domain of Zinc Transporter H5404_RS23130 PF07813 LTXXQ motif family protein H5404_RS23135 PF00486 Transcriptional regulatory protein, C terminal H5404_RS23135 PF00072 Response regulator receiver domain H5404_RS23140 PF16527 Two-component sensor protein CpxA, periplasmic domain H5404_RS23140 PF00672 HAMP domain H5404_RS23140 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS23140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS23145 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain H5404_RS23145 PF02777 Iron/manganese superoxide dismutases, C-terminal domain H5404_RS23150 PF00588 SpoU rRNA Methylase family H5404_RS23155 PF04186 FxsA cytoplasmic membrane protein H5404_RS23160 PF10415 Fumarase C C-terminus H5404_RS23160 PF00206 Lyase H5404_RS23165 PF03605 Anaerobic c4-dicarboxylate membrane transporter H5404_RS23170 PF02683 Cytochrome C biogenesis protein transmembrane region H5404_RS23170 PF11412 Disulphide bond corrector protein DsbC H5404_RS23175 PF00072 Response regulator receiver domain H5404_RS23175 PF00196 Bacterial regulatory proteins, luxR family H5404_RS23180 PF03471 Transporter associated domain H5404_RS23180 PF00999 Sodium/hydrogen exchanger family H5404_RS23180 PF02080 TrkA-C domain H5404_RS23190 PF00474 Sodium:solute symporter family H5404_RS23205 PF00206 Lyase H5404_RS23205 PF10415 Fumarase C C-terminus H5404_RS23210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase H5404_RS23210 PF00512 His Kinase A (phospho-acceptor) domain H5404_RS23210 PF00672 HAMP domain H5404_RS23210 PF01627 Hpt domain H5404_RS23210 PF00072 Response regulator receiver domain H5404_RS23215 PF12832 MFS_1 like family H5404_RS23230 PF16177 Acetyl-coenzyme A synthetase N-terminus H5404_RS23230 PF00501 AMP-binding enzyme H5404_RS23230 PF13193 AMP-binding enzyme C-terminal domain H5404_RS23235 PF01220 Dehydroquinase class II H5404_RS23240 PF00364 Biotin-requiring enzyme H5404_RS23245 PF02785 Biotin carboxylase C-terminal domain H5404_RS23245 PF00289 Biotin carboxylase, N-terminal domain H5404_RS23245 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain H5404_RS23255 PF01207 Dihydrouridine synthase (Dus) H5404_RS23260 PF02954 Bacterial regulatory protein, Fis family H5404_RS23265 PF07690 Major Facilitator Superfamily H5404_RS23275 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS23275 PF05230 MASE2 domain H5404_RS23280 PF13358 DDE superfamily endonuclease H5404_RS23340 PF01276 Orn/Lys/Arg decarboxylase, major domain H5404_RS23340 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain H5404_RS23340 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain H5404_RS23345 PF13520 Amino acid permease H5404_RS23350 PF00486 Transcriptional regulatory protein, C terminal H5404_RS23350 PF18500 CadC C-terminal domain 1 H5404_RS23355 PF13411 MerR HTH family regulatory protein H5404_RS23360 PF02142 MGS-like domain H5404_RS23360 PF01808 AICARFT/IMPCHase bienzyme H5404_RS23365 PF02843 Phosphoribosylglycinamide synthetase, C domain H5404_RS23365 PF02844 Phosphoribosylglycinamide synthetase, N domain H5404_RS23365 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain H5404_RS23375 PF00216 Bacterial DNA-binding protein H5404_RS23380 PF00571 CBS domain H5404_RS23380 PF01595 Cyclin M transmembrane N-terminal domain H5404_RS23385 PF04222 Protein of unknown function (DUF416) H5404_RS23390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain H5404_RS23395 PF03167 Uracil DNA glycosylase superfamily H5404_RS23400 PF01208 Uroporphyrinogen decarboxylase (URO-D) H5404_RS23415 PF09297 NADH pyrophosphatase zinc ribbon domain H5404_RS23415 PF00293 NUDIX domain H5404_RS23420 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ H5404_RS23425 PF04997 RNA polymerase Rpb1, domain 1 H5404_RS23425 PF04998 RNA polymerase Rpb1, domain 5 H5404_RS23425 PF05000 RNA polymerase Rpb1, domain 4 H5404_RS23425 PF04983 RNA polymerase Rpb1, domain 3 H5404_RS23425 PF00623 RNA polymerase Rpb1, domain 2 H5404_RS23430 PF10385 RNA polymerase beta subunit external 1 domain H5404_RS23430 PF00562 RNA polymerase Rpb2, domain 6 H5404_RS23430 PF04565 RNA polymerase Rpb2, domain 3 H5404_RS23430 PF04560 RNA polymerase Rpb2, domain 7 H5404_RS23430 PF04561 RNA polymerase Rpb2, domain 2 H5404_RS23430 PF04563 RNA polymerase beta subunit H5404_RS23435 PF00542 Ribosomal protein L7/L12 C-terminal domain H5404_RS23435 PF16320 Ribosomal protein L7/L12 dimerisation domain H5404_RS23440 PF00466 Ribosomal protein L10 H5404_RS23445 PF00687 Ribosomal protein L1p/L10e family H5404_RS23450 PF00298 Ribosomal protein L11, RNA binding domain H5404_RS23450 PF03946 Ribosomal protein L11, N-terminal domain H5404_RS23455 PF02357 Transcription termination factor nusG H5404_RS23455 PF00467 KOW motif H5404_RS23460 PF00584 SecE/Sec61-gamma subunits of protein translocation complex H5404_RS23465 PF00009 Elongation factor Tu GTP binding domain H5404_RS23465 PF03144 Elongation factor Tu domain 2 H5404_RS23465 PF03143 Elongation factor Tu C-terminal domain H5404_RS23490 PF00485 Phosphoribulokinase / Uridine kinase family H5404_RS23495 PF08279 HTH domain H5404_RS23495 PF03099 Biotin/lipoate A/B protein ligase family H5404_RS23495 PF02237 Biotin protein ligase C terminal domain H5404_RS23500 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain H5404_RS23500 PF01565 FAD binding domain H5404_RS23510 PF13091 PLD-like domain H5404_RS23545 PF01177 Asp/Glu/Hydantoin racemase H5404_RS23555 PF00593 TonB dependent receptor H5404_RS23555 PF07715 TonB-dependent Receptor Plug Domain H5404_RS23560 PF05958 tRNA (Uracil-5-)-methyltransferase H5404_RS23570 PF00440 Bacterial regulatory proteins, tetR family H5404_RS23575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain H5404_RS23575 PF07992 Pyridine nucleotide-disulphide oxidoreductase H5404_RS23580 PF01554 MatE H5404_RS23585 PF04072 Leucine carboxyl methyltransferase H5404_RS23590 PF01726 LexA DNA binding domain H5404_RS23590 PF00717 Peptidase S24-like H5404_RS23595 PF01553 Acyltransferase H5404_RS23600 PF01040 UbiA prenyltransferase family H5404_RS23605 PF04345 Chorismate lyase H5404_RS23610 PF03748 Flagellar basal body-associated protein FliL H5404_RS23615 PF01694 Rhomboid family H5404_RS23615 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease H5404_RS23620 PF00581 Rhodanese-like domain H5404_RS23625 PF04545 Sigma-70, region 4 H5404_RS23625 PF04542 Sigma-70 region 2 H5404_RS23625 PF00140 Sigma-70 factor, region 1.2 H5404_RS23630 PF18075 FtsX extracellular domain H5404_RS23635 PF00005 ABC transporter H5404_RS23640 PF00448 SRP54-type protein, GTPase domain H5404_RS23640 PF02881 SRP54-type protein, helical bundle domain H5404_RS23655 PF01914 MarC family integral membrane protein H5404_RS23705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain H5404_RS23705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain H5404_RS23710 PF01022 Bacterial regulatory protein, arsR family H5404_RS23715 PF00563 EAL domain H5404_RS23715 PF08668 HDOD domain H5404_RS23720 PF01810 LysE type translocator H5404_RS23725 PF12146 Serine aminopeptidase, S33 H5404_RS23745 PF03942 DTW domain H5404_RS23750 PF10442 FIST C domain H5404_RS23750 PF00563 EAL domain H5404_RS23750 PF08495 FIST N domain H5404_RS23750 PF00990 Diguanylate cyclase, GGDEF domain H5404_RS23755 PF13419 Haloacid dehalogenase-like hydrolase H5404_RS23760 PF02899 Phage integrase, N-terminal SAM-like domain H5404_RS23760 PF00589 Phage integrase family H5404_RS23770 PF01678 Diaminopimelate epimerase H5404_RS23775 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain H5404_RS23775 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain H5404_RS23785 PF01491 Frataxin-like domain H5404_RS23790 PF01295 Adenylate cyclase, class-I H5404_RS23790 PF12633 Adenylate cyclase NT domain H5404_RS23795 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain H5404_RS23795 PF03900 Porphobilinogen deaminase, C-terminal domain H5404_RS23800 PF02602 Uroporphyrinogen-III synthase HemD H5404_RS23805 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase H5404_RS23810 PF07219 HemY protein N-terminus H5404_RS23850 PF00175 Oxidoreductase NAD-binding domain H5404_RS23855 PF00111 2Fe-2S iron-sulfur cluster binding domain H5404_RS23860 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase H5404_RS23870 PF07497 Rho termination factor, RNA-binding domain H5404_RS23870 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5404_RS23870 PF07498 Rho termination factor, N-terminal domain H5404_RS23875 PF00085 Thioredoxin H5404_RS23880 PF00271 Helicase conserved C-terminal domain H5404_RS23880 PF00270 DEAD/DEAH box helicase H5404_RS23885 PF02541 Ppx/GppA phosphatase family H5404_RS23890 PF02592 Putative vitamin uptake transporter H5404_RS23900 PF00570 HRDC domain H5404_RS23900 PF16124 RecQ zinc-binding H5404_RS23900 PF09382 RQC domain H5404_RS23900 PF00271 Helicase conserved C-terminal domain H5404_RS23900 PF00270 DEAD/DEAH box helicase H5404_RS23905 PF00892 EamA-like transporter family H5404_RS23915 PF01810 LysE type translocator H5404_RS23925 PF00580 UvrD/REP helicase N-terminal domain H5404_RS23925 PF13361 UvrD-like helicase C-terminal domain H5404_RS23935 PF05114 Protein of unknown function (DUF692) H5404_RS23955 PF07690 Major Facilitator Superfamily H5404_RS23960 PF03466 LysR substrate binding domain H5404_RS23960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS23965 PF01321 Creatinase/Prolidase N-terminal domain H5404_RS23965 PF00557 Metallopeptidase family M24 H5404_RS23965 PF00557 Metallopeptidase family M24 H5404_RS23965 PF01321 Creatinase/Prolidase N-terminal domain H5404_RS23970 PF06968 Biotin and Thiamin Synthesis associated domain H5404_RS23970 PF04055 Radical SAM superfamily H5404_RS23975 PF05690 Thiazole biosynthesis protein ThiG H5404_RS23980 PF02597 ThiS family H5404_RS23985 PF00899 ThiF family H5404_RS23990 PF02581 Thiamine monophosphate synthase H5404_RS23995 PF01964 Radical SAM ThiC family H5404_RS23995 PF13667 ThiC-associated domain H5404_RS24000 PF02537 CrcB-like protein, Camphor Resistance (CrcB) H5404_RS24015 PF13358 DDE superfamily endonuclease H5404_RS24055 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_RS24060 PF07369 Protein of unknown function (DUF1488) H5404_RS24065 PF18317 Shikimate 5'-dehydrogenase C-terminal domain H5404_RS24065 PF01488 Shikimate / quinate 5-dehydrogenase H5404_RS24065 PF08501 Shikimate dehydrogenase substrate binding domain H5404_RS24070 PF01218 Coproporphyrinogen III oxidase H5404_RS24075 PF01300 Telomere recombination H5404_RS24080 PF00731 AIR carboxylase H5404_RS24085 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain H5404_RS24085 PF02222 ATP-grasp domain H5404_RS24090 PF01396 Topoisomerase DNA binding C4 zinc finger H5404_RS24095 PF04361 Protein of unknown function (DUF494) H5404_RS24100 PF17782 DprA winged helix domain H5404_RS24100 PF02481 DNA recombination-mediator protein A H5404_RS24110 PF01327 Polypeptide deformylase H5404_RS24115 PF00551 Formyl transferase H5404_RS24115 PF02911 Formyl transferase, C-terminal domain H5404_RS24120 PF01029 NusB family H5404_RS24120 PF01189 16S rRNA methyltransferase RsmB/F H5404_RS24125 PF02254 TrkA-N domain H5404_RS24125 PF02080 TrkA-C domain H5404_RS24130 PF02386 Cation transport protein H5404_RS24140 PF03006 Haemolysin-III related H5404_RS24145 PF07070 SpoOM protein H5404_RS24155 PF06288 Protein of unknown function (DUF1040) H5404_RS24160 PF13746 4Fe-4S dicluster domain H5404_RS24160 PF12801 4Fe-4S binding domain H5404_RS24160 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase H5404_RS24165 PF01636 Phosphotransferase enzyme family H5404_RS24170 PF01323 DSBA-like thioredoxin domain H5404_RS24175 PF01553 Acyltransferase H5404_RS24215 PF03781 Sulfatase-modifying factor enzyme 1 H5404_RS24230 PF04717 Type VI secretion system, phage-baseplate injector H5404_RS24245 PF02954 Bacterial regulatory protein, Fis family H5404_RS24250 PF13289 SIR2-like domain H5404_RS24255 PF00589 Phage integrase family H5404_RS24255 PF02899 Phage integrase, N-terminal SAM-like domain H5404_RS24305 PF00239 Resolvase, N terminal domain H5404_RS24305 PF02796 Helix-turn-helix domain of resolvase H5404_RS24310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain H5404_RS24310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain H5404_RS24310 PF00205 Thiamine pyrophosphate enzyme, central domain H5404_RS24320 PF01063 Amino-transferase class IV H5404_RS24325 PF00920 Dehydratase family H5404_RS24330 PF00291 Pyridoxal-phosphate dependent enzyme H5404_RS24330 PF00585 C-terminal regulatory domain of Threonine dehydratase H5404_RS24335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family H5404_RS24335 PF03466 LysR substrate binding domain H5404_RS24340 PF07690 Major Facilitator Superfamily H5404_RS24345 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_RS24350 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS24355 PF00132 Bacterial transferase hexapeptide (six repeats) H5404_RS24355 PF12804 MobA-like NTP transferase domain H5404_RS24360 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain H5404_RS24360 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain H5404_RS24365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5404_RS24365 PF02874 ATP synthase alpha/beta family, beta-barrel domain H5404_RS24370 PF00231 ATP synthase H5404_RS24375 PF00306 ATP synthase alpha/beta chain, C terminal domain H5404_RS24375 PF02874 ATP synthase alpha/beta family, beta-barrel domain H5404_RS24375 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain H5404_RS24380 PF00213 ATP synthase delta (OSCP) subunit H5404_RS24385 PF00430 ATP synthase B/B' CF(0) H5404_RS24390 PF00137 ATP synthase subunit C H5404_RS24395 PF00119 ATP synthase A chain H5404_RS24400 PF03899 ATP synthase I chain H5404_RS24405 PF17762 HTH domain found in ParB protein H5404_RS24405 PF02195 ParB-like nuclease domain H5404_RS24410 PF13614 AAA domain H5404_RS24415 PF02527 rRNA small subunit methyltransferase G H5404_RS24420 PF13932 GidA associated domain H5404_RS24420 PF01134 Glucose inhibited division protein A H5404_RS24425 PF00258 Flavodoxin H5404_RS24430 PF12631 MnmE helical domain H5404_RS24430 PF01926 50S ribosome-binding GTPase H5404_RS24430 PF10396 GTP-binding protein TrmE N-terminus H5404_RS24435 PF02096 60Kd inner membrane protein H5404_RS24435 PF14849 YidC periplasmic domain H5404_RS24440 PF01809 Putative membrane protein insertion efficiency factor H5404_RS24445 PF00825 Ribonuclease P H5404_RS24450 PF00468 Ribosomal protein L34 H5404_RS24455 PF00005 ABC transporter H5404_RS24460 PF00528 Binding-protein-dependent transport system inner membrane component H5404_RS24465 PF00497 Bacterial extracellular solute-binding proteins, family 3 H5404_RS24510 PF01381 Helix-turn-helix H5404_RS24515 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB H5404_RS24520 PF17358 Family of unknown function (DUF5384) H5404_RS24535 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) H5404_RS24545 PF00194 Eukaryotic-type carbonic anhydrase H5404_RS24590 PF04002 RadC-like JAB domain H5404_RS24690 PF04245 37-kD nucleoid-associated bacterial protein H5404_RS24705 PF02954 Bacterial regulatory protein, Fis family H5404_RS24715 PF02796 Helix-turn-helix domain of resolvase H5404_RS24715 PF00239 Resolvase, N terminal domain H5404_RS24725 PF00239 Resolvase, N terminal domain H5404_RS24725 PF02796 Helix-turn-helix domain of resolvase H5404_RS24745 PF13610 DDE domain H5404_RS24755 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system H5404_RS24760 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system H5404_RS24775 PF00691 OmpA family H5404_RS24775 PF01389 OmpA-like transmembrane domain H5404_RS24780 PF02368 Bacterial Ig-like domain (group 2) H5404_RS24780 PF11999 Protein of unknown function (DUF3494) H5404_RS24785 PF00239 Resolvase, N terminal domain H5404_RS24785 PF02796 Helix-turn-helix domain of resolvase H5404_RS24795 PF01555 DNA methylase H5404_RS24815 PF02796 Helix-turn-helix domain of resolvase H5404_RS24815 PF00239 Resolvase, N terminal domain H5404_RS24840 PF13700 Domain of unknown function (DUF4158) H5404_RS24840 PF01526 Tn3 transposase DDE domain H5404_RS24845 PF00239 Resolvase, N terminal domain H5404_RS24845 PF02796 Helix-turn-helix domain of resolvase H5404_RS24855 PF00239 Resolvase, N terminal domain H5404_RS24855 PF02796 Helix-turn-helix domain of resolvase H5404_RS24860 PF00816 H-NS histone family H5404_RS24865 PF03515 Colicin-like bacteriocin tRNase domain H5404_RS24865 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 H5404_RS24870 PF01320 Colicin immunity protein / pyocin immunity protein H5404_RS24895 PF01848 Hok/gef family H5404_RS24925 PF01751 Toprim domain H5404_RS24925 PF01131 DNA topoisomerase H5404_RS24955 PF10881 Protein of unknown function (DUF2726) H5404_RS25025 PF00437 Type II/IV secretion system protein H5404_RS25065 PF00216 Bacterial DNA-binding protein H5404_RS25230 PF00574 Clp protease H5404_RS25235 PF04860 Phage portal protein H5404_RS25240 PF03354 Phage Terminase H5404_RS25365 PF13614 AAA domain H5404_RS25425 PF13614 AAA domain H5404_RS25445 PF01526 Tn3 transposase DDE domain H5404_RS25445 PF13700 Domain of unknown function (DUF4158) H5404_RS25450 PF00239 Resolvase, N terminal domain H5404_RS25450 PF02796 Helix-turn-helix domain of resolvase H5404_RS25495 PF00691 OmpA family H5404_RS25535 PF01797 Transposase IS200 like H5404_RS25550 PF01609 Transposase DDE domain H5404_RS25550 PF02281 Transposase Tn5 dimerisation domain H5404_RS25550 PF14706 Transposase DNA-binding H5404_RS25575 PF02796 Helix-turn-helix domain of resolvase H5404_RS25575 PF00239 Resolvase, N terminal domain H5404_RS25605 PF18818 Metallopeptidase superfamily domain H5404_RS25605 PF13362 Toprim domain H5404_RS25605 PF08401 Domain of unknown function (DUF1738) H5404_RS25615 PF03230 Antirestriction protein H5404_RS25635 PF01751 Toprim domain H5404_RS25635 PF01131 DNA topoisomerase H5404_RS25685 PF01464 Transglycosylase SLT domain H5404_RS25710 PF01848 Hok/gef family H5404_RS25750 PF00437 Type II/IV secretion system protein H5404_RS25775 PF03743 Bacterial conjugation TrbI-like protein H5404_RS25785 PF03524 Conjugal transfer protein H5404_RS25805 PF00437 Type II/IV secretion system protein H5404_RS25815 PF03135 CagE, TrbE, VirB family, component of type IV transporter system H5404_RS25820 PF05101 Type IV secretory pathway, VirB3-like protein H5404_RS25825 PF04956 TrbC/VIRB2 family