locus-tag	class	description
OCU42_RS00010	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
OCU42_RS00030	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
OCU42_RS00035	COG0706	membrane insertase activity
OCU42_RS00045	COG0594	ribonuclease P activity
OCU42_RS00055	COG1126	abc transporter atp-binding protein
OCU42_RS00075	COG0592	DNA-directed DNA polymerase activity
OCU42_RS00085	COG0187	DNA topoisomerase II activity
OCU42_RS00090	COG0071	Belongs to the small heat shock protein (HSP20) family
OCU42_RS00100	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
OCU42_RS00115	COG2131	deaminase
OCU42_RS00120	COG3977	Valine--pyruvate aminotransferase
OCU42_RS00125	COG0751	glycine-tRNA ligase activity
OCU42_RS00130	COG0752	glycyl-tRNA synthetase alpha subunit
OCU42_RS00140	COG2119	membrane
OCU42_RS00165	COG0425	Belongs to the sulfur carrier protein TusA family
OCU42_RS00180	COG0129	dihydroxy-acid dehydratase activity
OCU42_RS00185	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
OCU42_RS00190	COG3978	acetolactate synthase activity
OCU42_RS00200	COG0606	chelatase, subunit chli
OCU42_RS00205	COG0204	Acyl-transferase
OCU42_RS00210	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
OCU42_RS00215	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
OCU42_RS00220	COG0840	transmembrane signaling receptor activity
OCU42_RS00225	COG3084	Protein conserved in bacteria
OCU42_RS00230	COG4326	sporulation control protein
OCU42_RS00235	COG1272	protein, Hemolysin III
OCU42_RS00240	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
OCU42_RS00245	COG0569	domain protein
OCU42_RS00250	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
OCU42_RS00250	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
OCU42_RS00265	COG0758	DNA mediated transformation
OCU42_RS00270	COG2922	Belongs to the Smg family
OCU42_RS00275	COG0551	DNA topoisomerase type I activity
OCU42_RS00280	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
OCU42_RS00285	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
OCU42_RS00290	COG0009	L-threonylcarbamoyladenylate synthase
OCU42_RS00295	COG0408	coproporphyrinogen oxidase activity
OCU42_RS00310	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
OCU42_RS00340	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
OCU42_RS00350	COG0583	DNA-binding transcription factor activity
OCU42_RS00355	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
OCU42_RS00360	COG2960	long-chain fatty acid transporting porin activity
OCU42_RS00365	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
OCU42_RS00370	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
OCU42_RS00415	COG0747	negative chemotaxis
OCU42_RS00420	COG0601	transmembrane transport
OCU42_RS00425	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCU42_RS00435	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
OCU42_RS00440	COG1172	Belongs to the binding-protein-dependent transport system permease family
OCU42_RS00445	COG1172	Belongs to the binding-protein-dependent transport system permease family
OCU42_RS00450	COG1129	ABC transporter
OCU42_RS00455	COG1879	ABC-type sugar transport system periplasmic component
OCU42_RS00465	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
OCU42_RS00470	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
OCU42_RS00485	COG0210	DNA helicase
OCU42_RS00495	COG3097	Belongs to the UPF0267 family
OCU42_RS00500	COG0405	Gamma-glutamyltransferase
OCU42_RS00505	COG1280	lysine exporter protein (LysE YggA)
OCU42_RS00510	COG2962	Rard protein
OCU42_RS00515	COG0514	ATP-dependent DNA helicase (RecQ)
OCU42_RS00535	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
OCU42_RS00540	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
OCU42_RS00545	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
OCU42_RS00550	COG2723	6-phospho-beta-galactosidase activity
OCU42_RS00555	COG1447	Phosphotransferase system cellobiose-specific component IIA
OCU42_RS00560	COG1609	Transcriptional regulator
OCU42_RS00575	COG1061	Type III restriction enzyme res subunit
OCU42_RS00585	COG1561	YicC-like family, N-terminal region
OCU42_RS00590	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
OCU42_RS00595	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
OCU42_RS00600	COG1560	Kdo2-lipid A biosynthetic process
OCU42_RS00605	COG1560	Kdo2-lipid A biosynthetic process
OCU42_RS00610	COG1309	transcriptional regulator
OCU42_RS00615	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
OCU42_RS00625	COG2003	Belongs to the UPF0758 family
OCU42_RS00630	COG0227	Belongs to the bacterial ribosomal protein bL28 family
OCU42_RS00635	COG0267	Belongs to the bacterial ribosomal protein bL33 family
OCU42_RS00650	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
OCU42_RS00655	COG0859	PFAM glycosyl transferase family 9
OCU42_RS00660	COG0463	Glycosyl transferase, family 2
OCU42_RS00665	COG0859	PFAM glycosyl transferase family 9
OCU42_RS00670	COG3642	lipopolysaccharide core region biosynthetic process
OCU42_RS00700	COG1519	Transferase
OCU42_RS00710	COG0859	PFAM glycosyl transferase family 9
OCU42_RS00720	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
OCU42_RS00725	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
OCU42_RS00760	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
OCU42_RS00815	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
OCU42_RS00825	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
OCU42_RS00860	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
OCU42_RS00875	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
OCU42_RS00910	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
OCU42_RS00930	COG0438	transferase activity, transferring glycosyl groups
OCU42_RS00940	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
OCU42_RS00950	COG3068	Protein conserved in bacteria
OCU42_RS00955	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
OCU42_RS00960	COG1573	uracil-dna glycosylase
OCU42_RS00980	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
OCU42_RS00995	COG2814	Major facilitator Superfamily
OCU42_RS01000	COG1566	PFAM secretion protein HlyD family protein
OCU42_RS01015	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
OCU42_RS01020	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
OCU42_RS01025	COG1758	RNA polymerase activity
OCU42_RS01030	COG0194	GDP metabolic process
OCU42_RS01035	COG1301	dicarboxylic acid transport
OCU42_RS01040	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
OCU42_RS01045	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
OCU42_RS01060	COG4232	protein-disulfide reductase activity
OCU42_RS01065	COG1027	Aspartate ammonia-lyase
OCU42_RS01070	COG5002	protein histidine kinase activity
OCU42_RS01070	COG3447	MASE1 domain protein
OCU42_RS01070	COG5001	Diguanylate cyclase
OCU42_RS01075	COG3030	protein affecting phage T7 exclusion by the F plasmid
OCU42_RS01080	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
OCU42_RS01085	COG2205	protein histidine kinase activity
OCU42_RS01090	COG0745	RESPONSE REGULATOR receiver
OCU42_RS01100	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
OCU42_RS01110	COG0205	6-phosphofructokinase activity
OCU42_RS01115	COG1494	fructose-1,6-bisphosphatase
OCU42_RS01120	COG3074	FtsZ-dependent cytokinesis
OCU42_RS01125	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
OCU42_RS01130	COG0460	homoserine dehydrogenase
OCU42_RS01130	COG0527	aspartate kinase activity
OCU42_RS01135	COG0626	cystathionine gamma-synthase activity
OCU42_RS01150	COG0281	malic enzyme
OCU42_RS01155	COG0254	rRNA binding
OCU42_RS01160	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
OCU42_RS01165	COG1609	Transcriptional regulator
OCU42_RS01175	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
OCU42_RS01180	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
OCU42_RS01185	COG1575	Belongs to the MenA family. Type 1 subfamily
OCU42_RS01195	COG0534	Mate efflux family protein
OCU42_RS01200	COG0149	triose-phosphate isomerase activity
OCU42_RS01225	COG0459	protein refolding
OCU42_RS01230	COG1119	ATPase activity
OCU42_RS01235	COG1509	lysine 2,3-aminomutase activity
OCU42_RS01255	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
OCU42_RS01260	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
OCU42_RS01265	COG1053	succinate dehydrogenase
OCU42_RS01270	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
OCU42_RS01275	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
OCU42_RS01280	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
OCU42_RS01285	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
OCU42_RS01290	COG1045	serine acetyltransferase
OCU42_RS01295	COG1695	Transcriptional regulator
OCU42_RS01300	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
OCU42_RS01305	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
OCU42_RS01310	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
OCU42_RS01315	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
OCU42_RS01320	COG0137	argininosuccinate synthase activity
OCU42_RS01335	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
OCU42_RS01335	COG0678	peroxiredoxin activity
OCU42_RS01345	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
OCU42_RS01370	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
OCU42_RS01375	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
OCU42_RS01385	COG0338	D12 class N6 adenine-specific DNA methyltransferase
OCU42_RS01390	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
OCU42_RS01400	COG0180	Tryptophanyl-tRNA synthetase
OCU42_RS01405	COG0446	pyridine nucleotide-disulphide oxidoreductase
OCU42_RS01415	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
OCU42_RS01435	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
OCU42_RS01445	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
OCU42_RS01465	COG3954	Phosphoribulokinase
OCU42_RS01475	COG0429	hydrolase of the alpha beta-hydrolase fold
OCU42_RS01485	COG0488	(ABC) transporter
OCU42_RS01490	COG2249	NAD(P)H dehydrogenase (quinone) activity
OCU42_RS01505	COG1047	Peptidyl-prolyl cis-trans
OCU42_RS01510	COG1446	asparaginase
OCU42_RS01515	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
OCU42_RS01520	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
OCU42_RS01525	COG0557	exoribonuclease II activity
OCU42_RS01530	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
OCU42_RS01535	COG0051	transcription antitermination factor activity, RNA binding
OCU42_RS01540	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
OCU42_RS01545	COG0088	Forms part of the polypeptide exit tunnel
OCU42_RS01555	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
OCU42_RS01560	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
OCU42_RS01565	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
OCU42_RS01570	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
OCU42_RS01575	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
OCU42_RS01585	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
OCU42_RS01590	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
OCU42_RS01595	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
OCU42_RS01600	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
OCU42_RS01605	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
OCU42_RS01610	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
OCU42_RS01615	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
OCU42_RS01620	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
OCU42_RS01630	COG1841	ribosomal large subunit assembly
OCU42_RS01635	COG0200	Binds to the 23S rRNA
OCU42_RS01640	COG0201	protein transport
OCU42_RS01645	COG0257	Belongs to the bacterial ribosomal protein bL36 family
OCU42_RS01650	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
OCU42_RS01655	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
OCU42_RS01665	COG0202	RNA polymerase activity
OCU42_RS01670	COG0203	ribosomal protein L17
OCU42_RS01680	COG0545	Peptidyl-prolyl cis-trans isomerase
OCU42_RS01690	COG2153	protein acetylation
OCU42_RS01700	COG0737	Belongs to the 5'-nucleotidase family
OCU42_RS01705	COG1648	precorrin-2 dehydrogenase activity
OCU42_RS01705	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
OCU42_RS01710	COG0175	sulfate reduction
OCU42_RS01715	COG2895	sulfate adenylyltransferase (ATP) activity
OCU42_RS01720	COG0490	domain, Protein
OCU42_RS01720	COG0471	metal ion transport
OCU42_RS01725	COG0529	Catalyzes the synthesis of activated sulfate
OCU42_RS01745	COG1136	(ABC) transporter
OCU42_RS01760	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
OCU42_RS01765	COG0729	surface antigen
OCU42_RS01770	COG2911	Protein conserved in bacteria
OCU42_RS01775	COG2105	PFAM AIG2 family protein
OCU42_RS01780	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
OCU42_RS01790	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
OCU42_RS01795	COG0163	prenyltransferase activity
OCU42_RS01800	COG4143	(ABC) transporter
OCU42_RS01805	COG1178	ABC-type Fe3 transport system permease component
OCU42_RS01810	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
OCU42_RS01815	COG3028	Belongs to the UPF0307 family
OCU42_RS01820	COG0312	modulator of DNA gyrase
OCU42_RS01825	COG2239	Acts as a magnesium transporter
OCU42_RS01830	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
OCU42_RS01835	COG1660	Displays ATPase and GTPase activities
OCU42_RS01840	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
OCU42_RS01845	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
OCU42_RS01855	COG1137	ATPase activity
OCU42_RS01870	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
OCU42_RS01875	COG0517	IMP dehydrogenase activity
OCU42_RS01875	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
OCU42_RS01885	COG1127	ABC transporter
OCU42_RS01890	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
OCU42_RS01895	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
OCU42_RS01900	COG2854	intermembrane phospholipid transfer
OCU42_RS01910	COG5007	Belongs to the BolA IbaG family
OCU42_RS01915	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
OCU42_RS01920	COG0204	Acyl-transferase
OCU42_RS01925	COG0251	oxidation-reduction process
OCU42_RS01930	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
OCU42_RS01945	COG3385	transposase activity
OCU42_RS01950	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
OCU42_RS01970	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
OCU42_RS01980	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
OCU42_RS01990	COG0564	pseudouridine synthase activity
OCU42_RS01995	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
OCU42_RS02000	COG4269	membrane
OCU42_RS02005	COG0501	Belongs to the peptidase M48B family
OCU42_RS02010	COG0525	valine-tRNA ligase activity
OCU42_RS02015	COG2927	DNA polymerase III (CHI subunit)
OCU42_RS02020	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
OCU42_RS02025	COG0795	lipopolysaccharide-transporting ATPase activity
OCU42_RS02030	COG0795	lipopolysaccharide-transporting ATPase activity
OCU42_RS02050	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
OCU42_RS02100	COG1410	methionine synthase
OCU42_RS02100	COG0646	methionine synthase
OCU42_RS02105	COG0629	single-stranded DNA binding
OCU42_RS02120	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
OCU42_RS02130	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
OCU42_RS02135	COG0527	aspartate kinase activity
OCU42_RS02140	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
OCU42_RS02145	COG0651	ATP synthesis coupled electron transport
OCU42_RS02150	COG0650	Formate hydrogenlyase subunit 4
OCU42_RS02155	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
OCU42_RS02160	COG4237	Hydrogenase 4 membrane
OCU42_RS02165	COG0651	ATP synthesis coupled electron transport
OCU42_RS02170	COG3261	NADH dehydrogenase
OCU42_RS02170	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
OCU42_RS02175	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
OCU42_RS02180	COG3260	NADH ubiquinone oxidoreductase 20
OCU42_RS02190	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
OCU42_RS02195	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
OCU42_RS02200	COG3383	formate dehydrogenase (NAD+) activity
OCU42_RS02220	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
OCU42_RS02225	COG0298	carbon dioxide binding
OCU42_RS02235	COG0309	Hydrogenase expression formation protein (HypE)
OCU42_RS02245	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
OCU42_RS02250	COG2199	diguanylate cyclase activity
OCU42_RS02250	COG2200	EAL domain
OCU42_RS02255	COG1077	Cell shape determining protein MreB Mrl
OCU42_RS02260	COG1792	Involved in formation and maintenance of cell shape
OCU42_RS02265	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
OCU42_RS02270	COG0424	maF-like protein
OCU42_RS02280	COG3164	Protein of unknown function
OCU42_RS02285	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
OCU42_RS02290	COG0312	modulator of DNA gyrase
OCU42_RS02315	COG0697	spore germination
OCU42_RS02325	COG0633	Ferredoxin
OCU42_RS02350	COG0800	Aldolase
OCU42_RS02355	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCU42_RS02365	COG0246	Mannitol dehydrogenase
OCU42_RS02380	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
OCU42_RS02390	COG2186	Transcriptional regulator
OCU42_RS02405	COG0589	response to stress
OCU42_RS02415	COG2358	TRAP transporter, solute receptor (TAXI family
OCU42_RS02420	COG1438	arginine binding
OCU42_RS02425	COG0039	L-malate dehydrogenase activity
OCU42_RS02430	COG0142	geranyltranstransferase activity
OCU42_RS02435	COG0261	This protein binds to 23S rRNA in the presence of protein L20
OCU42_RS02445	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
OCU42_RS02450	COG2966	Psort location CytoplasmicMembrane, score
OCU42_RS02455	COG3610	response to peptide
OCU42_RS02470	COG2967	ApaG domain
OCU42_RS02475	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
OCU42_RS02480	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
OCU42_RS02485	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
OCU42_RS02490	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
OCU42_RS02495	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
OCU42_RS02550	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
OCU42_RS02560	COG0220	tRNA (guanine-N7-)-methyltransferase activity
OCU42_RS02565	COG2066	Belongs to the glutaminase family
OCU42_RS02570	COG0635	Involved in the biosynthesis of porphyrin-containing compound
OCU42_RS02575	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
OCU42_RS02580	COG3501	Rhs element vgr protein
OCU42_RS02605	COG3209	COG3209 Rhs family protein
OCU42_RS02630	COG3040	lipid binding
OCU42_RS02640	COG1366	Belongs to the anti-sigma-factor antagonist family
OCU42_RS02660	COG4999	Histidine kinase
OCU42_RS02660	COG3437	response regulator, receiver
OCU42_RS02660	COG2205	protein histidine kinase activity
OCU42_RS02660	COG3850	Histidine kinase
OCU42_RS02665	COG3437	response regulator, receiver
OCU42_RS02675	COG1872	DUF167
OCU42_RS02680	COG0762	integral membrane protein
OCU42_RS02685	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
OCU42_RS02690	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
OCU42_RS02700	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
OCU42_RS02705	COG1678	Uncharacterized ACR, COG1678
OCU42_RS02710	COG0189	ligase activity
OCU42_RS02715	COG1385	rRNA (uridine-N3-)-methyltransferase activity
OCU42_RS02720	COG3091	SprT-like family
OCU42_RS02725	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
OCU42_RS02730	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
OCU42_RS02735	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
OCU42_RS02740	COG0126	phosphoglycerate kinase activity
OCU42_RS02750	COG0668	transmembrane transport
OCU42_RS02760	COG0469	pyruvate kinase activity
OCU42_RS02765	COG1349	DNA-binding transcription factor activity
OCU42_RS02770	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
OCU42_RS02825	COG2188	Transcriptional regulator
OCU42_RS02830	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
OCU42_RS02835	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
OCU42_RS02840	COG1447	Phosphotransferase system cellobiose-specific component IIA
OCU42_RS02845	COG1486	melibiose metabolic process
OCU42_RS02850	COG0251	oxidation-reduction process
OCU42_RS02865	COG3119	arylsulfatase activity
OCU42_RS02870	COG3119	arylsulfatase activity
OCU42_RS02880	COG3119	arylsulfatase activity
OCU42_RS02885	COG0641	radical SAM
OCU42_RS02895	COG3119	arylsulfatase activity
OCU42_RS02900	COG0840	transmembrane signaling receptor activity
OCU42_RS02920	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
OCU42_RS02930	COG2186	Transcriptional regulator
OCU42_RS02935	COG4948	Mandelate Racemase Muconate Lactonizing
OCU42_RS02945	COG0753	catalase activity
OCU42_RS02950	COG2095	MarC family integral membrane protein
OCU42_RS03030	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
OCU42_RS03055	COG0604	alcohol dehydrogenase
OCU42_RS03060	COG1368	sulfuric ester hydrolase activity
OCU42_RS03100	COG0358	DNA primase activity
OCU42_RS03105	COG1610	YqeY-like protein
OCU42_RS03110	COG0828	Belongs to the bacterial ribosomal protein bS21 family
OCU42_RS03115	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
OCU42_RS03125	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
OCU42_RS03130	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
OCU42_RS03135	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
OCU42_RS03140	COG1968	undecaprenyl-diphosphatase activity
OCU42_RS03145	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
OCU42_RS03150	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
OCU42_RS03160	COG0585	pseudouridine synthase activity
OCU42_RS03165	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
OCU42_RS03170	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
OCU42_RS03175	COG4942	peptidase
OCU42_RS03175	COG1388	LysM domain
OCU42_RS03180	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
OCU42_RS03185	COG5297	Belongs to the glycosyl hydrolase family 6
OCU42_RS03190	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCU42_RS03190	COG4191	Histidine kinase
OCU42_RS03195	COG0784	Response regulator, receiver
OCU42_RS03195	COG3437	response regulator, receiver
OCU42_RS03200	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
OCU42_RS03205	COG0823	Involved in the tonB-independent uptake of proteins
OCU42_RS03210	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
OCU42_RS03225	COG1175	transmembrane transport
OCU42_RS03230	COG0395	ABC-type sugar transport system, permease component
OCU42_RS03235	COG3842	ATPase activity
OCU42_RS03250	COG0534	Mate efflux family protein
OCU42_RS03255	COG0800	Aldolase
OCU42_RS03260	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCU42_RS03270	COG1917	Cupin 2, conserved barrel domain protein
OCU42_RS03275	COG1028	Short-chain dehydrogenase reductase Sdr
OCU42_RS03280	COG1414	Transcriptional regulator
OCU42_RS03285	COG1546	Belongs to the CinA family
OCU42_RS03295	COG2137	regulation of response to DNA damage stimulus
OCU42_RS03300	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
OCU42_RS03305	COG0527	aspartate kinase activity
OCU42_RS03310	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
OCU42_RS03345	COG3630	sodium ion export across plasma membrane
OCU42_RS03350	COG0511	ligase activity, forming carbon-carbon bonds
OCU42_RS03350	COG5016	pyruvate
OCU42_RS03355	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
OCU42_RS03365	COG1238	metal cluster binding
OCU42_RS03370	COG0612	Peptidase, M16
OCU42_RS03375	COG2918	glutathione biosynthetic process
OCU42_RS03380	COG1854	S-ribosylhomocysteine lyase activity
OCU42_RS03385	COG4536	flavin adenine dinucleotide binding
OCU42_RS03390	COG4137	Cytochrome C assembly protein
OCU42_RS03395	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
OCU42_RS03405	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
OCU42_RS03415	COG0335	large ribosomal subunit rRNA binding
OCU42_RS03420	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
OCU42_RS03425	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
OCU42_RS03430	COG3105	Protein conserved in bacteria
OCU42_RS03435	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
OCU42_RS03440	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
OCU42_RS03445	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
OCU42_RS03450	COG0625	glutathione transferase activity
OCU42_RS03455	COG2969	positive regulation of protein catabolic process
OCU42_RS03460	COG2823	Periplasmic or secreted lipoprotein
OCU42_RS03465	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
OCU42_RS03475	COG3107	peptidoglycan biosynthetic process
OCU42_RS03480	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
OCU42_RS03490	COG0534	Mate efflux family protein
OCU42_RS03500	COG0275	rRNA processing
OCU42_RS03505	COG3116	cell division
OCU42_RS03510	COG0768	penicillin binding
OCU42_RS03515	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
OCU42_RS03520	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
OCU42_RS03530	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
OCU42_RS03535	COG0772	Belongs to the SEDS family
OCU42_RS03545	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
OCU42_RS03550	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
OCU42_RS03555	COG0849	cell division
OCU42_RS03560	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
OCU42_RS03565	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
OCU42_RS03575	COG0653	protein targeting
OCU42_RS03580	COG0494	nUDIX hydrolase
OCU42_RS03585	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
OCU42_RS03590	COG0505	Belongs to the CarA family
OCU42_RS03595	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
OCU42_RS03600	COG0730	response to heat
OCU42_RS03605	COG0583	DNA-binding transcription factor activity
OCU42_RS03610	COG2860	membrane
OCU42_RS03615	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
OCU42_RS03625	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
OCU42_RS03630	COG0493	'glutamate synthase
OCU42_RS03635	COG0067	glutamate synthase
OCU42_RS03635	COG0069	glutamate synthase activity
OCU42_RS03635	COG0070	glutamate synthase
OCU42_RS03645	COG0067	glutamate synthase
OCU42_RS03645	COG0069	glutamate synthase activity
OCU42_RS03645	COG0070	glutamate synthase
OCU42_RS03650	COG1242	4 iron, 4 sulfur cluster binding
OCU42_RS03655	COG2203	Gaf domain
OCU42_RS03655	COG4251	negative regulation of phosphorylation
OCU42_RS03655	COG5001	Diguanylate cyclase
OCU42_RS03655	COG3706	GGDEF domain
OCU42_RS03660	COG0784	Response regulator, receiver
OCU42_RS03660	COG5002	protein histidine kinase activity
OCU42_RS03660	COG2198	Histidine kinase
OCU42_RS03665	COG0745	RESPONSE REGULATOR receiver
OCU42_RS03675	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
OCU42_RS03685	COG0083	homoserine kinase activity
OCU42_RS03690	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
OCU42_RS03695	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
OCU42_RS03705	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
OCU42_RS03720	COG1115	amino acid carrier protein
OCU42_RS03725	COG3022	response to hydroperoxide
OCU42_RS03735	COG0084	hydrolase, TatD family'
OCU42_RS03740	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
OCU42_RS03745	COG1280	lysine exporter protein (LysE YggA)
OCU42_RS03760	COG0583	DNA-binding transcription factor activity
OCU42_RS03765	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
OCU42_RS03770	COG0813	purine-nucleoside phosphorylase activity
OCU42_RS03780	COG0560	Phosphoserine phosphatase
OCU42_RS03790	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
OCU42_RS03795	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
OCU42_RS03800	COG0583	DNA-binding transcription factor activity
OCU42_RS03810	COG1022	Amp-dependent synthetase and ligase
OCU42_RS03815	COG3437	response regulator, receiver
OCU42_RS03820	COG1609	Transcriptional regulator
OCU42_RS03830	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
OCU42_RS03835	COG2171	N-acyltransferase activity
OCU42_RS03840	COG3141	response to X-ray
OCU42_RS03845	COG0583	DNA-binding transcription factor activity
OCU42_RS03850	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
OCU42_RS03855	COG1074	ATP-dependent DNA helicase activity
OCU42_RS03860	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
OCU42_RS03870	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
OCU42_RS03870	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
OCU42_RS03875	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
OCU42_RS03880	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
OCU42_RS03885	COG2166	iron-sulfur cluster assembly
OCU42_RS03890	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
OCU42_RS03900	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
OCU42_RS03920	COG2813	Specifically methylates the guanine in position
OCU42_RS03925	COG0271	Belongs to the BolA IbaG family
OCU42_RS03930	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
OCU42_RS03935	COG1805	sodium ion transport
OCU42_RS03945	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
OCU42_RS03970	COG0583	DNA-binding transcription factor activity
OCU42_RS03975	COG0697	spore germination
OCU42_RS03990	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
OCU42_RS03995	COG0733	neurotransmitter:sodium symporter activity
OCU42_RS04000	COG0189	ligase activity
OCU42_RS04005	COG0189	ligase activity
OCU42_RS04005	COG4067	protein conserved in archaea
OCU42_RS04010	COG2195	Cleaves the N-terminal amino acid of tripeptides
OCU42_RS04015	COG2252	PERMEase
OCU42_RS04020	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
OCU42_RS04030	COG1073	alpha beta
OCU42_RS04050	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
OCU42_RS04055	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
OCU42_RS04055	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
OCU42_RS04075	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
OCU42_RS04080	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
OCU42_RS04085	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
OCU42_RS04100	COG0024	Methionine aminopeptidase
OCU42_RS04105	COG0052	Belongs to the universal ribosomal protein uS2 family
OCU42_RS04110	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
OCU42_RS04115	COG0528	UMP kinase activity
OCU42_RS04120	COG0233	cytoplasmic translational termination
OCU42_RS04125	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
OCU42_RS04130	COG0575	Belongs to the CDS family
OCU42_RS04135	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
OCU42_RS04140	COG0750	zinc metalloprotease
OCU42_RS04150	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
OCU42_RS04155	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
OCU42_RS04160	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
OCU42_RS04165	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
OCU42_RS04170	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
OCU42_RS04175	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
OCU42_RS04180	COG0587	DNA-directed DNA polymerase activity
OCU42_RS04185	COG0825	malonyl-CoA metabolic process
OCU42_RS04205	COG0741	lytic transglycosylase activity
OCU42_RS04205	COG1388	LysM domain
OCU42_RS04210	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
OCU42_RS04215	COG2226	methyltransferase
OCU42_RS04220	COG0328	RNA-DNA hybrid ribonuclease activity
OCU42_RS04240	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
OCU42_RS04245	COG0121	glutamine amidotransferase
OCU42_RS04250	COG1051	belongs to the nudix hydrolase family
OCU42_RS04265	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
OCU42_RS04270	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
OCU42_RS04275	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
OCU42_RS04280	COG2840	Smr protein MutS2
OCU42_RS04295	COG2608	mercury ion transmembrane transporter activity
OCU42_RS04295	COG2217	Heavy metal translocating P-type atpase
OCU42_RS04315	COG1846	Transcriptional regulator
OCU42_RS04320	COG0697	spore germination
OCU42_RS04330	COG3047	cAMP biosynthetic process
OCU42_RS04365	COG2747	anti-sigma28 factor FlgM
OCU42_RS04375	COG0835	chemotaxis
OCU42_RS04375	COG0784	Response regulator, receiver
OCU42_RS04380	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
OCU42_RS04385	COG1815	bacterial-type flagellum-dependent cell motility
OCU42_RS04400	COG1749	Flagellar hook protein flgE
OCU42_RS04405	COG4787	bacterial-type flagellum-dependent cell motility
OCU42_RS04415	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
OCU42_RS04420	COG1706	bacterial-type flagellum-dependent cell motility
OCU42_RS04425	COG1705	Flagellar rod assembly protein muramidase FlgJ
OCU42_RS04425	COG3951	Flagellar rod assembly protein muramidase FlgJ
OCU42_RS04435	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
OCU42_RS04445	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
OCU42_RS04515	COG0012	GTP binding
OCU42_RS04520	COG0193	aminoacyl-tRNA hydrolase activity
OCU42_RS04525	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
OCU42_RS04530	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
OCU42_RS04535	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
OCU42_RS04540	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
OCU42_RS04545	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
OCU42_RS04550	COG2890	protein-(glutamine-N5) methyltransferase activity
OCU42_RS04560	COG2912	Transglutaminase-like superfamily
OCU42_RS04565	COG2877	3-deoxy-8-phosphooctulonate synthase activity
OCU42_RS04570	COG0737	Belongs to the 5'-nucleotidase family
OCU42_RS04575	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
OCU42_RS04595	COG1393	Belongs to the ArsC family
OCU42_RS04600	COG4783	chaperone-mediated protein folding
OCU42_RS04610	COG0840	transmembrane signaling receptor activity
OCU42_RS04615	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
OCU42_RS04625	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
OCU42_RS04630	COG2188	Transcriptional regulator
OCU42_RS04695	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
OCU42_RS04700	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
OCU42_RS04705	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
OCU42_RS04710	COG1876	peptidase activity
OCU42_RS04720	COG1393	Belongs to the ArsC family
OCU42_RS04730	COG0672	)-iron permease
OCU42_RS04745	COG0577	efflux transmembrane transporter activity
OCU42_RS04755	COG0577	efflux transmembrane transporter activity
OCU42_RS04755	COG1136	(ABC) transporter
OCU42_RS04760	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
OCU42_RS04770	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
OCU42_RS04775	COG2837	iron assimilation
OCU42_RS04785	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
OCU42_RS04795	COG1334	flagellar protein FlaG
OCU42_RS04800	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
OCU42_RS04810	COG1516	flagellar protein fliS
OCU42_RS04830	COG1677	Flagellar hook-basal body complex protein FliE
OCU42_RS04840	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
OCU42_RS04865	COG1580	Controls the rotational direction of flagella during chemotaxis
OCU42_RS04890	COG1987	bacterial-type flagellum assembly
OCU42_RS04905	COG2840	Smr protein MutS2
OCU42_RS04910	COG2890	protein-(glutamine-N5) methyltransferase activity
OCU42_RS04915	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
OCU42_RS04920	COG3101	peptidyl-lysine hydroxylation
OCU42_RS04940	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
OCU42_RS04945	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
OCU42_RS04950	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
OCU42_RS04955	COG0735	belongs to the Fur family
OCU42_RS04960	COG0716	FMN binding
OCU42_RS04965	COG0596	Alpha beta hydrolase
OCU42_RS04970	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
OCU42_RS04975	COG0033	Phosphoglucomutase
OCU42_RS04990	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
OCU42_RS05000	COG2009	succinate dehydrogenase
OCU42_RS05005	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
OCU42_RS05010	COG1053	succinate dehydrogenase
OCU42_RS05020	COG0567	Dehydrogenase, E1 component
OCU42_RS05025	COG0508	dehydrogenase complex catalyzes the overall conversion of
OCU42_RS05035	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
OCU42_RS05040	COG1108	ABC-type Mn2 Zn2 transport systems permease components
OCU42_RS05045	COG1121	(ABC) transporter
OCU42_RS05050	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
OCU42_RS05055	COG1918	ferrous iron import across plasma membrane
OCU42_RS05085	COG3102	Protein conserved in bacteria
OCU42_RS05090	COG1025	Belongs to the peptidase M16 family
OCU42_RS05095	COG2062	phosphohistidine phosphatase, SixA
OCU42_RS05125	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
OCU42_RS05130	COG0784	Response regulator, receiver
OCU42_RS05130	COG2198	Histidine kinase
OCU42_RS05130	COG0643	Histidine kinase
OCU42_RS05135	COG2201	protein-glutamate methylesterase activity
OCU42_RS05140	COG1192	Involved in chromosome partitioning
OCU42_RS05155	COG0835	chemotaxis
OCU42_RS05185	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
OCU42_RS05190	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
OCU42_RS05200	COG2130	NADP-dependent
OCU42_RS05210	COG1917	Cupin 2, conserved barrel domain protein
OCU42_RS05210	COG2207	Transcriptional regulator
OCU42_RS05225	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCU42_RS05230	COG0601	transmembrane transport
OCU42_RS05250	COG1131	(ABC) transporter
OCU42_RS05255	COG0842	Transport permease protein
OCU42_RS05260	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
OCU42_RS05290	COG1960	acyl-CoA dehydrogenase activity
OCU42_RS05300	COG0318	PFAM AMP-dependent synthetase and ligase
OCU42_RS05310	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
OCU42_RS05320	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
OCU42_RS05370	COG2272	Belongs to the type-B carboxylesterase lipase family
OCU42_RS05390	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCU42_RS05395	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
OCU42_RS05420	COG0252	asparaginase activity
OCU42_RS05425	COG1280	lysine exporter protein (LysE YggA)
OCU42_RS05440	COG1126	abc transporter atp-binding protein
OCU42_RS05445	COG0765	amino acid transport
OCU42_RS05450	COG4597	amino acid ABC transporter
OCU42_RS05455	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCU42_RS05495	COG0582	viral genome integration into host DNA
OCU42_RS05540	COG3083	sulfuric ester hydrolase activity
OCU42_RS05545	COG3082	Protein of unknown function (DUF1414)
OCU42_RS05550	COG3081	Nucleoid-associated protein
OCU42_RS05555	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
OCU42_RS05560	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
OCU42_RS05565	COG1454	alcohol dehydrogenase
OCU42_RS05565	COG1012	belongs to the aldehyde dehydrogenase family
OCU42_RS05570	COG0659	secondary active sulfate transmembrane transporter activity
OCU42_RS05575	COG1530	ribonuclease E activity
OCU42_RS05580	COG0564	pseudouridine synthase activity
OCU42_RS05585	COG0424	maF-like protein
OCU42_RS05590	COG1399	metal-binding, possibly nucleic acid-binding protein
OCU42_RS05595	COG0333	Belongs to the bacterial ribosomal protein bL32 family
OCU42_RS05605	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
OCU42_RS05635	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
OCU42_RS05640	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
OCU42_RS05645	COG0470	DNA polymerase III
OCU42_RS05650	COG0084	hydrolase, TatD family'
OCU42_RS05655	COG1263	PTS System
OCU42_RS05655	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
OCU42_RS05670	COG0733	neurotransmitter:sodium symporter activity
OCU42_RS05680	COG4667	esterase of the alpha-beta hydrolase superfamily
OCU42_RS05685	COG0469	pyruvate kinase activity
OCU42_RS05690	COG1940	carbohydrate kinase activity
OCU42_RS05695	COG0835	chemotaxis
OCU42_RS05695	COG0784	Response regulator, receiver
OCU42_RS05700	COG1028	Short-chain dehydrogenase reductase Sdr
OCU42_RS05705	COG0616	signal peptide processing
OCU42_RS05725	COG0789	Transcriptional regulator
OCU42_RS05730	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
OCU42_RS05735	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
OCU42_RS05755	COG2271	Major facilitator Superfamily
OCU42_RS05765	COG1349	DNA-binding transcription factor activity
OCU42_RS05770	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
OCU42_RS05780	COG4565	transcriptional regulatory protein
OCU42_RS05785	COG3290	protein histidine kinase activity
OCU42_RS05790	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
OCU42_RS05795	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
OCU42_RS05800	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
OCU42_RS05805	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
OCU42_RS05810	COG1053	succinate dehydrogenase
OCU42_RS05830	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
OCU42_RS05835	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
OCU42_RS05835	COG0574	Belongs to the PEP-utilizing enzyme family
OCU42_RS05840	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
OCU42_RS05915	COG3507	Belongs to the glycosyl hydrolase 43 family
OCU42_RS05920	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
OCU42_RS05925	COG2084	Dehydrogenase
OCU42_RS05930	COG4943	cyclic-guanylate-specific phosphodiesterase activity
OCU42_RS05935	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
OCU42_RS05940	COG1984	allophanate hydrolase subunit 2
OCU42_RS05945	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
OCU42_RS05950	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
OCU42_RS05960	COG4948	Mandelate Racemase Muconate Lactonizing
OCU42_RS05965	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
OCU42_RS05970	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
OCU42_RS05975	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
OCU42_RS05985	COG1733	regulation of RNA biosynthetic process
OCU42_RS05990	COG0702	epimerase
OCU42_RS06005	COG3437	response regulator, receiver
OCU42_RS06015	COG3852	Histidine kinase
OCU42_RS06025	COG2204	response regulator
OCU42_RS06035	COG4139	cobalamin transport
OCU42_RS06045	COG0745	RESPONSE REGULATOR receiver
OCU42_RS06055	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
OCU42_RS06055	COG1263	PTS System
OCU42_RS06065	COG1621	beta-fructofuranosidase activity
OCU42_RS06070	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCU42_RS06075	COG0435	Glutathione S-transferase
OCU42_RS06080	COG0857	belongs to the CobB CobQ family
OCU42_RS06080	COG0280	phosphate acetyltransferase
OCU42_RS06085	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
OCU42_RS06090	COG3092	negative regulation of chromosome organization
OCU42_RS06100	COG4120	Belongs to the binding-protein-dependent transport system permease family
OCU42_RS06125	COG0653	protein targeting
OCU42_RS06135	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
OCU42_RS06145	COG2205	protein histidine kinase activity
OCU42_RS06170	COG0488	(ABC) transporter
OCU42_RS06200	COG1129	ABC transporter
OCU42_RS06205	COG1172	Belongs to the binding-protein-dependent transport system permease family
OCU42_RS06210	COG1172	Belongs to the binding-protein-dependent transport system permease family
OCU42_RS06230	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
OCU42_RS06235	COG0156	8-amino-7-oxononanoate synthase activity
OCU42_RS06240	COG2226	methyltransferase
OCU42_RS06240	COG1073	alpha beta
OCU42_RS06245	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
OCU42_RS06255	COG3766	membrane
OCU42_RS06270	COG1842	Phage shock protein A
OCU42_RS06280	COG0754	glutathionylspermidine amidase activity
OCU42_RS06295	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
OCU42_RS06305	COG0482	sulfurtransferase activity
OCU42_RS06310	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCU42_RS06315	COG2916	Histone family protein nucleoid-structuring protein H-NS
OCU42_RS06320	COG1757	Na H antiporter
OCU42_RS06325	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
OCU42_RS06330	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
OCU42_RS06335	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
OCU42_RS06340	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
OCU42_RS06340	COG0131	Imidazoleglycerol-phosphate dehydratase
OCU42_RS06345	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
OCU42_RS06350	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
OCU42_RS06360	COG0140	phosphoribosyl-ATP diphosphatase activity
OCU42_RS06360	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
OCU42_RS06365	COG1187	pseudouridine synthase activity
OCU42_RS06375	COG1278	Cold shock
OCU42_RS06380	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
OCU42_RS06385	COG0542	response to heat
OCU42_RS06390	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
OCU42_RS06395	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
OCU42_RS06400	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
OCU42_RS06410	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
OCU42_RS06420	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
OCU42_RS06430	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
OCU42_RS06435	COG0297	glycogen (starch) synthase activity
OCU42_RS06440	COG3070	regulator of competence-specific genes
OCU42_RS06445	COG1609	Transcriptional regulator
OCU42_RS06450	COG1434	Gram-negative-bacterium-type cell wall biogenesis
OCU42_RS06455	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
OCU42_RS06460	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
OCU42_RS06465	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
OCU42_RS06485	COG0463	Glycosyl transferase, family 2
OCU42_RS06490	COG0189	ligase activity
OCU42_RS06505	COG0500	methyltransferase
OCU42_RS06510	COG4106	trans-aconitate 2-methyltransferase activity
OCU42_RS06515	COG1801	Protein of unknown function DUF72
OCU42_RS06520	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
OCU42_RS06525	COG1435	thymidine kinase activity
OCU42_RS06550	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
OCU42_RS06555	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
OCU42_RS06585	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
OCU42_RS06590	COG0072	phenylalanine-tRNA ligase activity
OCU42_RS06590	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
OCU42_RS06595	COG0776	regulation of translation
OCU42_RS06600	COG0500	methyltransferase
OCU42_RS06615	COG1346	cytolysis
OCU42_RS06620	COG1380	Effector of murein hydrolase LrgA
OCU42_RS06625	COG2925	Exonuclease
OCU42_RS06750	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
OCU42_RS06755	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
OCU42_RS06760	COG2988	succinylglutamate desuccinylase activity
OCU42_RS06765	COG4139	cobalamin transport
OCU42_RS06770	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
OCU42_RS06785	COG1538	Outer membrane efflux protein
OCU42_RS06805	COG0583	DNA-binding transcription factor activity
OCU42_RS06830	COG0835	chemotaxis
OCU42_RS06830	COG0784	Response regulator, receiver
OCU42_RS06840	COG2199	diguanylate cyclase activity
OCU42_RS06855	COG3119	arylsulfatase activity
OCU42_RS06860	COG3119	arylsulfatase activity
OCU42_RS06880	COG2909	trisaccharide binding
OCU42_RS06885	COG0058	SHG alpha-glucan phosphorylase activity
OCU42_RS06890	COG1640	4-alpha-glucanotransferase
OCU42_RS06895	COG3842	ATPase activity
OCU42_RS06905	COG1175	transmembrane transport
OCU42_RS06910	COG3833	ABC-type maltose transport systems, permease component
OCU42_RS06925	COG1605	Chorismate mutase
OCU42_RS06935	COG0625	glutathione transferase activity
OCU42_RS06965	COG3547	Transposase (IS116 IS110 IS902 family)
OCU42_RS06985	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
OCU42_RS06995	COG3842	ATPase activity
OCU42_RS07030	COG0837	glucose binding
OCU42_RS07040	COG2995	paraquat-inducible protein a
OCU42_RS07045	COG3008	intermembrane lipid transfer
OCU42_RS07045	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
OCU42_RS07060	COG0840	transmembrane signaling receptor activity
OCU42_RS07065	COG0402	S-adenosylhomocysteine deaminase activity
OCU42_RS07070	COG3300	MHYT domain
OCU42_RS07070	COG5001	Diguanylate cyclase
OCU42_RS07080	COG1448	Aminotransferase
OCU42_RS07085	COG0017	Asparaginyl-tRNA synthetase
OCU42_RS07090	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
OCU42_RS07120	COG1760	l-serine dehydratase
OCU42_RS07140	COG0446	pyridine nucleotide-disulphide oxidoreductase
OCU42_RS07140	COG1902	pentaerythritol trinitrate reductase activity
OCU42_RS07145	COG0247	lactate metabolic process
OCU42_RS07145	COG2181	nitrate reductase activity
OCU42_RS07150	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
OCU42_RS07160	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
OCU42_RS07175	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
OCU42_RS07175	COG2190	(PTS) system
OCU42_RS07175	COG1263	PTS System
OCU42_RS07185	COG1017	nitric oxide dioxygenase activity
OCU42_RS07185	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
OCU42_RS07190	COG0720	synthase
OCU42_RS07195	COG1760	l-serine dehydratase
OCU42_RS07205	COG0494	nUDIX hydrolase
OCU42_RS07220	COG3385	transposase activity
OCU42_RS07250	COG3106	COG3106 Predicted ATPase
OCU42_RS07255	COG3768	UPF0283 membrane protein
OCU42_RS07265	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
OCU42_RS07270	COG2186	Transcriptional regulator
OCU42_RS07275	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
OCU42_RS07280	COG0372	Belongs to the citrate synthase family
OCU42_RS07285	COG2079	MmgE PrpD family protein
OCU42_RS07295	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
OCU42_RS07300	COG0561	phosphatase activity
OCU42_RS07305	COG0602	queuosine metabolic process
OCU42_RS07320	COG0443	Heat shock 70 kDa protein
OCU42_RS07325	COG0443	Heat shock 70 kDa protein
OCU42_RS07345	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
OCU42_RS07370	COG1643	Atp-dependent helicase
OCU42_RS07380	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
OCU42_RS07390	COG3501	Rhs element vgr protein
OCU42_RS07400	COG3209	COG3209 Rhs family protein
OCU42_RS07400	COG4104	PAAR repeat-containing protein
OCU42_RS07410	COG3209	COG3209 Rhs family protein
OCU42_RS07430	COG3209	COG3209 Rhs family protein
OCU42_RS07450	COG3209	COG3209 Rhs family protein
OCU42_RS07475	COG2176	DNA-directed DNA polymerase activity
OCU42_RS07485	COG1609	Transcriptional regulator
OCU42_RS07495	COG2182	Extracellular solute-binding protein
OCU42_RS07500	COG1175	transmembrane transport
OCU42_RS07505	COG3833	ABC-type maltose transport systems, permease component
OCU42_RS07515	COG1874	Beta-galactosidase
OCU42_RS07520	COG4580	involved in the transport of maltose and maltodextrins
OCU42_RS07525	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
OCU42_RS07545	COG0798	PFAM Bile acid sodium symporter
OCU42_RS07550	COG0431	NADPH-dependent FMN reductase
OCU42_RS07560	COG0640	Transcriptional regulator
OCU42_RS07565	COG0346	lactoylglutathione lyase activity
OCU42_RS07580	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
OCU42_RS07610	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
OCU42_RS07625	COG1115	amino acid carrier protein
OCU42_RS07645	COG0584	glycerophosphoryl diester phosphodiesterase
OCU42_RS07655	COG0811	peptide transport
OCU42_RS07660	COG0811	peptide transport
OCU42_RS07665	COG0848	biopolymer transport protein
OCU42_RS07680	COG1793	dna ligase
OCU42_RS07685	COG0534	Mate efflux family protein
OCU42_RS07690	COG0307	riboflavin synthase, alpha
OCU42_RS07695	COG3001	Fructosamine kinase
OCU42_RS07710	COG1940	carbohydrate kinase activity
OCU42_RS07715	COG1763	Mo-molybdopterin cofactor biosynthetic process
OCU42_RS07720	COG0746	molybdenum cofactor guanylyltransferase activity
OCU42_RS07735	COG0004	ammonium transporteR
OCU42_RS07740	COG0814	amino acid
OCU42_RS07745	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
OCU42_RS07750	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
OCU42_RS07755	COG1177	transmembrane transport
OCU42_RS07760	COG1176	ABC-type spermidine putrescine transport system, permease component I
OCU42_RS07765	COG3842	ATPase activity
OCU42_RS07780	COG0037	tRNA processing
OCU42_RS07785	COG0589	response to stress
OCU42_RS07790	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
OCU42_RS07805	COG2205	protein histidine kinase activity
OCU42_RS07805	COG0784	Response regulator, receiver
OCU42_RS07820	COG0778	Nitroreductase
OCU42_RS07835	COG3321	synthase
OCU42_RS07840	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
OCU42_RS07845	COG0156	8-amino-7-oxononanoate synthase activity
OCU42_RS07850	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
OCU42_RS07855	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
OCU42_RS07855	COG1414	Transcriptional regulator
OCU42_RS07865	COG0028	Belongs to the TPP enzyme family
OCU42_RS07870	COG0574	Belongs to the PEP-utilizing enzyme family
OCU42_RS07870	COG3848	Pyruvate phosphate dikinase
OCU42_RS07875	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
OCU42_RS07880	COG3706	GGDEF domain
OCU42_RS07890	COG3120	sequence-specific DNA binding
OCU42_RS07895	COG1067	ATP-dependent peptidase activity
OCU42_RS07900	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
OCU42_RS07915	COG0488	(ABC) transporter
OCU42_RS07930	COG0167	dihydroorotate dehydrogenase activity
OCU42_RS07935	COG2902	Dehydrogenase
OCU42_RS07945	COG0308	aminopeptidase N
OCU42_RS07955	COG0793	Belongs to the peptidase S41A family
OCU42_RS07960	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
OCU42_RS07965	COG1956	GAF domain-containing protein
OCU42_RS07970	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
OCU42_RS07970	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
OCU42_RS07985	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
OCU42_RS07990	COG1666	GTP binding
OCU42_RS08000	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
OCU42_RS08000	COG1648	precorrin-2 dehydrogenase activity
OCU42_RS08005	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCU42_RS08010	COG4597	amino acid ABC transporter
OCU42_RS08015	COG0765	amino acid transport
OCU42_RS08020	COG1126	abc transporter atp-binding protein
OCU42_RS08025	COG0670	Belongs to the BI1 family
OCU42_RS08030	COG2920	part of a sulfur-relay system
OCU42_RS08035	COG1254	Belongs to the acylphosphatase family
OCU42_RS08040	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
OCU42_RS08045	COG0840	transmembrane signaling receptor activity
OCU42_RS08065	COG2301	Belongs to the HpcH HpaI aldolase family
OCU42_RS08075	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
OCU42_RS08090	COG4565	transcriptional regulatory protein
OCU42_RS08095	COG1335	isochorismatase
OCU42_RS08115	COG4565	transcriptional regulatory protein
OCU42_RS08120	COG3290	protein histidine kinase activity
OCU42_RS08150	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
OCU42_RS08155	COG1846	Transcriptional regulator
OCU42_RS08170	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
OCU42_RS08175	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
OCU42_RS08195	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
OCU42_RS08200	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
OCU42_RS08230	COG0840	transmembrane signaling receptor activity
OCU42_RS08235	COG0019	diaminopimelate decarboxylase activity
OCU42_RS08250	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
OCU42_RS08260	COG4181	ATPase activity
OCU42_RS08265	COG0534	Mate efflux family protein
OCU42_RS08270	COG0702	epimerase
OCU42_RS08285	COG1335	isochorismatase
OCU42_RS08300	COG2814	Major facilitator Superfamily
OCU42_RS08305	COG1187	pseudouridine synthase activity
OCU42_RS08310	COG1061	Type III restriction enzyme res subunit
OCU42_RS08315	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
OCU42_RS08330	COG3313	Fe-S protein
OCU42_RS08340	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
OCU42_RS08345	COG0564	pseudouridine synthase activity
OCU42_RS08350	COG0733	neurotransmitter:sodium symporter activity
OCU42_RS08355	COG0840	transmembrane signaling receptor activity
OCU42_RS08365	COG0626	cystathionine gamma-synthase activity
OCU42_RS08370	COG1983	PspC domain protein
OCU42_RS08380	COG1842	Phage shock protein A
OCU42_RS08385	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
OCU42_RS08395	COG4168	peptide transport system, permease
OCU42_RS08400	COG4171	peptide transport system, permease
OCU42_RS08410	COG4172	Belongs to the ABC transporter superfamily
OCU42_RS08420	COG0390	transport system, permease component
OCU42_RS08425	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
OCU42_RS08430	COG0322	excinuclease ABC activity
OCU42_RS08435	COG2197	response regulator
OCU42_RS08445	COG0417	DNA replication proofreading
OCU42_RS08460	COG3099	Belongs to the UPF0263 family
OCU42_RS08470	COG2020	methyltransferase activity
OCU42_RS08475	COG0247	lactate metabolic process
OCU42_RS08475	COG0277	FAD linked oxidase domain protein
OCU42_RS08505	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
OCU42_RS08515	COG0281	malic enzyme
OCU42_RS08525	COG2949	membrane
OCU42_RS08545	COG0492	ferredoxin-NADP+ reductase activity
OCU42_RS08550	COG4988	ABC transporter
OCU42_RS08555	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
OCU42_RS08560	COG1187	pseudouridine synthase activity
OCU42_RS08565	COG0009	L-threonylcarbamoyladenylate synthase
OCU42_RS08575	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
OCU42_RS08580	COG0512	Glutamine amidotransferase of anthranilate synthase
OCU42_RS08585	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
OCU42_RS08590	COG0134	indole-3-glycerol-phosphate synthase activity
OCU42_RS08590	COG0135	phosphoribosylanthranilate isomerase activity
OCU42_RS08595	COG0133	tryptophan synthase activity
OCU42_RS08600	COG0159	tryptophan synthase activity
OCU42_RS08605	COG1301	dicarboxylic acid transport
OCU42_RS08615	COG2917	probably involved in intracellular septation
OCU42_RS08625	COG2350	Protein conserved in bacteria
OCU42_RS08635	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
OCU42_RS08640	COG0583	DNA-binding transcription factor activity
OCU42_RS08650	COG0765	amino acid transport
OCU42_RS08655	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCU42_RS08665	COG1522	sequence-specific DNA binding
OCU42_RS08680	COG1032	radical SAM domain protein
OCU42_RS08685	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
OCU42_RS08695	COG4191	Histidine kinase
OCU42_RS08700	COG2204	response regulator
OCU42_RS08710	COG3070	regulator of competence-specific genes
OCU42_RS08720	COG0076	glutamate decarboxylase activity
OCU42_RS08725	COG1737	Transcriptional regulator
OCU42_RS08730	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
OCU42_RS08735	COG2985	domain, Protein
OCU42_RS08735	COG3273	potassium ion transport
OCU42_RS08740	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
OCU42_RS08750	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
OCU42_RS08755	COG0569	domain protein
OCU42_RS08760	COG1477	protein flavinylation
OCU42_RS08765	COG1132	(ABC) transporter
OCU42_RS08770	COG1132	(ABC) transporter
OCU42_RS08780	COG1342	Belongs to the UPF0251 family
OCU42_RS08790	COG0739	heme binding
OCU42_RS08800	COG1609	Transcriptional regulator
OCU42_RS08805	COG1840	ABC-type Fe3 transport system, periplasmic component
OCU42_RS08820	COG3842	ATPase activity
OCU42_RS08825	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
OCU42_RS08945	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
OCU42_RS08950	COG2423	ornithine cyclodeaminase activity
OCU42_RS08960	COG3591	Belongs to the peptidase S1B family
OCU42_RS08970	COG3414	Phosphotransferase system galactitol-specific IIB component
OCU42_RS08980	COG1609	Transcriptional regulator
OCU42_RS08985	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCU42_RS08990	COG0765	amino acid transport
OCU42_RS08995	COG0765	amino acid transport
OCU42_RS09020	COG1028	Short-chain dehydrogenase reductase Sdr
OCU42_RS09025	COG1169	isochorismate synthase
OCU42_RS09030	COG1021	2,3-dihydroxybenzoate-AMP ligase
OCU42_RS09035	COG1535	isochorismatase
OCU42_RS09035	COG3433	isochorismatase activity
OCU42_RS09040	COG4592	Periplasmic binding protein
OCU42_RS09060	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
OCU42_RS09065	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
OCU42_RS09070	COG1120	ATPase activity
OCU42_RS09080	COG3251	PFAM MbtH domain protein
OCU42_RS09090	COG1629	transport
OCU42_RS09090	COG4774	siderophore transport
OCU42_RS09095	COG3534	alpha-L-arabinofuranosidase
OCU42_RS09100	COG2828	Protein conserved in bacteria
OCU42_RS09105	COG4565	transcriptional regulatory protein
OCU42_RS09110	COG0471	metal ion transport
OCU42_RS09170	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
OCU42_RS09180	COG2885	chlorophyll binding
OCU42_RS09185	COG0823	Involved in the tonB-independent uptake of proteins
OCU42_RS09195	COG0848	biopolymer transport protein
OCU42_RS09200	COG0811	peptide transport
OCU42_RS09210	COG3790	cyd operon protein YbgE
OCU42_RS09215	COG4890	Cyd operon protein YbgT
OCU42_RS09220	COG1294	oxidase, subunit
OCU42_RS09225	COG1271	oxidase subunit
OCU42_RS09235	COG0632	four-way junction helicase activity
OCU42_RS09240	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
OCU42_RS09245	COG0215	cysteine-tRNA ligase activity
OCU42_RS09250	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
OCU42_RS09255	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
OCU42_RS09260	COG3012	SEC-C Motif Domain Protein
OCU42_RS09265	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
OCU42_RS09270	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
OCU42_RS09275	COG1199	ATP-dependent helicase activity
OCU42_RS09280	COG0730	response to heat
OCU42_RS09295	COG0708	Exodeoxyribonuclease III
OCU42_RS09300	COG3385	transposase activity
OCU42_RS09305	COG1882	Formate acetyltransferase
OCU42_RS09310	COG3385	transposase activity
OCU42_RS09320	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
OCU42_RS09325	COG3013	Belongs to the UPF0304 family
OCU42_RS09330	COG2766	serine protein kinase
OCU42_RS09335	COG2718	Belongs to the UPF0229 family
OCU42_RS09340	COG2719	SpoVR family
OCU42_RS09345	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
OCU42_RS09350	COG2835	tetraacyldisaccharide 4'-kinase activity
OCU42_RS09355	COG1663	tetraacyldisaccharide 4'-kinase activity
OCU42_RS09360	COG1132	(ABC) transporter
OCU42_RS09365	COG0658	competence protein
OCU42_RS09365	COG2333	competence protein COMEC
OCU42_RS09375	COG4591	ABC-type transport system involved in lipoprotein release permease component
OCU42_RS09380	COG1136	(ABC) transporter
OCU42_RS09385	COG4591	ABC-type transport system involved in lipoprotein release permease component
OCU42_RS09395	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
OCU42_RS09405	COG1252	NADH dehydrogenase
OCU42_RS09410	COG3150	esterase
OCU42_RS09435	COG0537	adenosine 5'-monophosphoramidase activity
OCU42_RS09445	COG2186	Transcriptional regulator
OCU42_RS09450	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
OCU42_RS09455	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
OCU42_RS09460	COG1674	ftsk spoiiie
OCU42_RS09465	COG1522	sequence-specific DNA binding
OCU42_RS09485	COG0284	orotidine-5'-phosphate decarboxylase activity
OCU42_RS09490	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
OCU42_RS09495	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
OCU42_RS09500	COG0776	regulation of translation
OCU42_RS09505	COG0539	negative regulation of cytoplasmic translation
OCU42_RS09510	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
OCU42_RS09530	COG1555	photosystem II stabilization
OCU42_RS09535	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
OCU42_RS09540	COG0776	regulation of translation
OCU42_RS09545	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
OCU42_RS09565	COG4191	Histidine kinase
OCU42_RS09575	COG0740	serine-type endopeptidase activity
OCU42_RS09585	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
OCU42_RS09590	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
OCU42_RS09595	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
OCU42_RS09600	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
OCU42_RS09605	COG1263	PTS System
OCU42_RS09605	COG2190	(PTS) system
OCU42_RS09605	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
OCU42_RS09610	COG0363	glucosamine-6-phosphate deaminase activity
OCU42_RS09615	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
OCU42_RS09620	COG1846	Transcriptional regulator
OCU42_RS09620	COG1940	carbohydrate kinase activity
OCU42_RS09635	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
OCU42_RS09635	COG2169	Transcriptional regulator
OCU42_RS09675	COG4628	conserved protein (DUF2132)
OCU42_RS09680	COG4953	penicillin-binding protein 1C
OCU42_RS09685	COG2373	Large extracellular alpha-helical protein
OCU42_RS09725	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
OCU42_RS09730	COG2951	lytic endotransglycosylase activity
OCU42_RS09745	COG2894	cell division
OCU42_RS09750	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
OCU42_RS09755	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
OCU42_RS09760	COG0318	PFAM AMP-dependent synthetase and ligase
OCU42_RS09765	COG0596	Alpha beta hydrolase
OCU42_RS09780	COG1214	PFAM Peptidase M22, glycoprotease
OCU42_RS09785	COG1199	ATP-dependent helicase activity
OCU42_RS09795	COG0788	formyltetrahydrofolate deformylase activity
OCU42_RS09805	COG3547	Transposase (IS116 IS110 IS902 family)
OCU42_RS09815	COG0252	asparaginase activity
OCU42_RS09820	COG3139	Protein of unknown function (DUF1315)
OCU42_RS09830	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
OCU42_RS09835	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
OCU42_RS09840	COG0676	glucose-6-phosphate 1-epimerase activity
OCU42_RS09845	COG2226	methyltransferase
OCU42_RS09855	COG0840	transmembrane signaling receptor activity
OCU42_RS09870	COG1879	ABC-type sugar transport system periplasmic component
OCU42_RS09880	COG4145	pantothenate transmembrane transporter activity
OCU42_RS09900	COG0210	DNA helicase
OCU42_RS09915	COG0662	Cupin 2, conserved barrel domain protein
OCU42_RS09920	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
OCU42_RS09920	COG2207	Transcriptional regulator
OCU42_RS09935	COG5297	Belongs to the glycosyl hydrolase family 6
OCU42_RS09955	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
OCU42_RS09960	COG1271	oxidase subunit
OCU42_RS09965	COG1294	oxidase, subunit
OCU42_RS10025	COG2204	response regulator
OCU42_RS10035	COG3850	Histidine kinase
OCU42_RS10040	COG2197	response regulator
OCU42_RS10045	COG2181	nitrate reductase activity
OCU42_RS10050	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
OCU42_RS10055	COG1140	nitrate reductase beta subunit
OCU42_RS10060	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
OCU42_RS10065	COG2223	nitrite transmembrane transporter activity
OCU42_RS10075	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
OCU42_RS10140	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
OCU42_RS10160	COG1946	Acyl-CoA thioesterase
OCU42_RS10165	COG1522	sequence-specific DNA binding
OCU42_RS10175	COG1335	isochorismatase
OCU42_RS10195	COG2855	membrane
OCU42_RS10215	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
OCU42_RS10220	COG0596	Alpha beta hydrolase
OCU42_RS10225	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
OCU42_RS10230	COG1169	isochorismate synthase
OCU42_RS10235	COG0436	Aminotransferase
OCU42_RS10240	COG4172	Belongs to the ABC transporter superfamily
OCU42_RS10250	COG0601	transmembrane transport
OCU42_RS10255	COG4166	transmembrane transport
OCU42_RS10305	COG3547	Transposase (IS116 IS110 IS902 family)
OCU42_RS10335	COG3210	domain, Protein
OCU42_RS10335	COG3210	domain, Protein
OCU42_RS10340	COG2831	hemolysin activation secretion protein
OCU42_RS10345	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
OCU42_RS10350	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
OCU42_RS10360	COG1228	amidohydrolase
OCU42_RS10365	COG2986	histidine ammonia-lyase
OCU42_RS10395	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
OCU42_RS10435	COG2983	Belongs to the UPF0260 family
OCU42_RS10445	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
OCU42_RS10460	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
OCU42_RS10465	COG0745	RESPONSE REGULATOR receiver
OCU42_RS10470	COG0583	DNA-binding transcription factor activity
OCU42_RS10475	COG0778	Nitroreductase
OCU42_RS10480	COG1024	Enoyl-CoA hydratase
OCU42_RS10480	COG1250	3-hydroxyacyl-CoA dehydrogenase
OCU42_RS10485	COG0183	Belongs to the thiolase family
OCU42_RS10490	COG2067	long-chain fatty acid transport protein
OCU42_RS10495	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
OCU42_RS10500	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
OCU42_RS10510	COG0572	uridine kinase
OCU42_RS10515	COG0489	protein tyrosine kinase activity
OCU42_RS10520	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
OCU42_RS10520	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
OCU42_RS10540	COG0314	molybdopterin synthase activity
OCU42_RS10545	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
OCU42_RS10550	COG0315	cyclic pyranopterin monophosphate synthase activity
OCU42_RS10555	COG0521	Mo-molybdopterin cofactor biosynthetic process
OCU42_RS10560	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
OCU42_RS10565	COG0391	Required for morphogenesis under gluconeogenic growth conditions
OCU42_RS10570	COG2198	Histidine kinase
OCU42_RS10575	COG2204	response regulator
OCU42_RS10580	COG0556	nucleotide-excision repair
OCU42_RS10595	COG3527	Alpha-acetolactate decarboxylase
OCU42_RS10605	COG1028	Short-chain dehydrogenase reductase Sdr
OCU42_RS10610	COG4657	Part of a membrane complex involved in electron transport
OCU42_RS10615	COG2878	Part of a membrane complex involved in electron transport
OCU42_RS10620	COG4656	Part of a membrane complex involved in electron transport
OCU42_RS10625	COG4658	electron transport chain
OCU42_RS10630	COG4659	FMN binding
OCU42_RS10635	COG4660	Part of a membrane complex involved in electron transport
OCU42_RS10640	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
OCU42_RS10645	COG2186	Transcriptional regulator
OCU42_RS10650	COG0346	lactoylglutathione lyase activity
OCU42_RS10660	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
OCU42_RS10665	COG2056	Na+-H+ antiporter family
OCU42_RS10670	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
OCU42_RS10675	COG1286	toxin biosynthetic process
OCU42_RS10680	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
OCU42_RS10685	COG0285	dihydrofolate synthase activity
OCU42_RS10690	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
OCU42_RS10695	COG0101	tRNA pseudouridine synthase activity
OCU42_RS10710	COG1846	Transcriptional regulator
OCU42_RS10710	COG1940	carbohydrate kinase activity
OCU42_RS10715	COG0367	asparagine synthase
OCU42_RS10730	COG0563	adenylate kinase activity
OCU42_RS10735	COG0326	Molecular chaperone. Has ATPase activity
OCU42_RS10740	COG3710	Transcriptional regulator
OCU42_RS10775	COG1090	epimerase
OCU42_RS10780	COG0300	oxidoreductase activity
OCU42_RS10785	COG3118	belongs to the thioredoxin family
OCU42_RS10790	COG0789	Transcriptional regulator
OCU42_RS10795	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
OCU42_RS10800	COG3115	cell septum assembly
OCU42_RS10805	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
OCU42_RS10810	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
OCU42_RS10815	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
OCU42_RS10825	COG2190	(PTS) system
OCU42_RS10830	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
OCU42_RS10840	COG1702	phosphate starvation-inducible protein PhoH
OCU42_RS10845	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
OCU42_RS10850	COG4535	Mg2 and Co2 transporter CorC
OCU42_RS10855	COG0815	Transfers the fatty acyl group on membrane lipoproteins
OCU42_RS10870	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
OCU42_RS10875	COG1466	dna polymerase III delta subunit
OCU42_RS10880	COG0799	negative regulation of ribosome biogenesis
OCU42_RS10885	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
OCU42_RS10890	COG0768	penicillin binding
OCU42_RS10895	COG0772	Belongs to the SEDS family
OCU42_RS10900	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
OCU42_RS10905	COG1686	Belongs to the peptidase S11 family
OCU42_RS10925	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
OCU42_RS10935	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
OCU42_RS10955	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
OCU42_RS10960	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
OCU42_RS10965	COG2011	ABC-type metal ion transport system permease component
OCU42_RS10970	COG1464	Belongs to the NlpA lipoprotein family
OCU42_RS10975	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
OCU42_RS10985	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
OCU42_RS10985	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
OCU42_RS11000	COG1611	Belongs to the LOG family
OCU42_RS11005	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
OCU42_RS11010	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
OCU42_RS11025	COG0583	DNA-binding transcription factor activity
OCU42_RS11030	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
OCU42_RS11030	COG0301	tRNA thio-modification
OCU42_RS11035	COG4989	oxidoreductase activity
OCU42_RS11045	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
OCU42_RS11050	COG1722	exodeoxyribonuclease VII activity
OCU42_RS11055	COG0142	geranyltranstransferase activity
OCU42_RS11060	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
OCU42_RS11065	COG0564	pseudouridine synthase activity
OCU42_RS11070	COG3098	single-species biofilm formation
OCU42_RS11085	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
OCU42_RS11100	COG1671	Belongs to the UPF0178 family
OCU42_RS11105	COG1720	tRNA m6t6A37 methyltransferase activity
OCU42_RS11110	COG0442	prolyl-tRNA aminoacylation
OCU42_RS11135	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
OCU42_RS11145	COG0686	Belongs to the AlaDH PNT family
OCU42_RS11155	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
OCU42_RS11170	COG0583	DNA-binding transcription factor activity
OCU42_RS11210	COG0484	heat shock protein binding
OCU42_RS11215	COG0443	Heat shock 70 kDa protein
OCU42_RS11220	COG2358	TRAP transporter, solute receptor (TAXI family
OCU42_RS11235	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
OCU42_RS11240	COG0497	DNA recombination
OCU42_RS11250	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
OCU42_RS11255	COG3385	transposase activity
OCU42_RS11260	COG2914	Belongs to the UPF0125 (RnfH) family
OCU42_RS11265	COG2867	negative regulation of translational initiation
OCU42_RS11270	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
OCU42_RS11285	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
OCU42_RS11360	COG0641	radical SAM
OCU42_RS11365	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
OCU42_RS11365	COG2190	(PTS) system
OCU42_RS11365	COG1263	PTS System
OCU42_RS11370	COG3711	transcriptional antiterminator
OCU42_RS11375	COG0840	transmembrane signaling receptor activity
OCU42_RS11385	COG2501	S4 domain
OCU42_RS11410	COG4774	siderophore transport
OCU42_RS11415	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
OCU42_RS11425	COG0778	Nitroreductase
OCU42_RS11430	COG4172	Belongs to the ABC transporter superfamily
OCU42_RS11435	COG4239	(ABC) transporter, permease
OCU42_RS11440	COG4174	ABC transporter (Permease)
OCU42_RS11445	COG4166	transmembrane transport
OCU42_RS11450	COG4615	Cyclic peptide transporter
OCU42_RS11465	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
OCU42_RS11480	COG2192	nodulation
OCU42_RS11530	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
OCU42_RS11585	COG3550	peptidyl-serine autophosphorylation
OCU42_RS11595	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
OCU42_RS11595	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
OCU42_RS11595	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
OCU42_RS11600	COG2207	Transcriptional regulator
OCU42_RS11610	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
OCU42_RS11630	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
OCU42_RS11640	COG0561	phosphatase activity
OCU42_RS11645	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
OCU42_RS11650	COG3623	hexulose-6-phosphate isomerase
OCU42_RS11665	COG1115	amino acid carrier protein
OCU42_RS11670	COG5002	protein histidine kinase activity
OCU42_RS11680	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
OCU42_RS11685	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
OCU42_RS11695	COG0454	-acetyltransferase
OCU42_RS11700	COG0789	Transcriptional regulator
OCU42_RS11705	COG0840	transmembrane signaling receptor activity
OCU42_RS11710	COG2814	Major facilitator Superfamily
OCU42_RS11715	COG0583	DNA-binding transcription factor activity
OCU42_RS11740	COG0583	DNA-binding transcription factor activity
OCU42_RS11760	COG0516	GMP reductase activity
OCU42_RS11760	COG0517	IMP dehydrogenase activity
OCU42_RS11775	COG1160	GTP binding
OCU42_RS11780	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
OCU42_RS11785	COG2976	Protein conserved in bacteria
OCU42_RS11790	COG0124	histidyl-tRNA synthetase
OCU42_RS11795	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
OCU42_RS11800	COG1426	Protein conserved in bacteria
OCU42_RS11805	COG0820	rRNA (adenine-C2-)-methyltransferase activity
OCU42_RS11810	COG0105	UTP biosynthetic process
OCU42_RS11820	COG2975	iron-sulfur cluster assembly
OCU42_RS11825	COG0633	Ferredoxin
OCU42_RS11830	COG0443	Heat shock 70 kDa protein
OCU42_RS11840	COG0316	Belongs to the HesB IscA family
OCU42_RS11845	COG0822	iron-sulfur transferase activity
OCU42_RS11850	COG1104	cysteine desulfurase activity
OCU42_RS11860	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
OCU42_RS11865	COG0483	inositol monophosphate 1-phosphatase activity
OCU42_RS11870	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
OCU42_RS11875	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
OCU42_RS11880	COG1862	Preprotein translocase
OCU42_RS11885	COG0343	queuine tRNA-ribosyltransferase activity
OCU42_RS11890	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
OCU42_RS11895	COG0517	IMP dehydrogenase activity
OCU42_RS11905	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
OCU42_RS11910	COG0583	DNA-binding transcription factor activity
OCU42_RS11915	COG0450	alkyl hydroperoxide reductase
OCU42_RS11920	COG0704	Plays a role in the regulation of phosphate uptake
OCU42_RS11925	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
OCU42_RS11930	COG0581	inorganic phosphate transmembrane transporter activity
OCU42_RS11940	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
OCU42_RS11945	COG0248	Ppx GppA phosphatase
OCU42_RS11955	COG5002	protein histidine kinase activity
OCU42_RS11960	COG0745	RESPONSE REGULATOR receiver
OCU42_RS11965	COG2974	May be involved in recombination
OCU42_RS11970	COG0826	peptidase U32
OCU42_RS11975	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
OCU42_RS12005	COG4974	Belongs to the 'phage' integrase family
OCU42_RS12010	COG2932	Transcriptional regulator
OCU42_RS12170	COG0542	response to heat
OCU42_RS12180	COG0564	pseudouridine synthase activity
OCU42_RS12185	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
OCU42_RS12190	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
OCU42_RS12195	COG0077	Prephenate dehydratase
OCU42_RS12195	COG1605	Chorismate mutase
OCU42_RS12200	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
OCU42_RS12205	COG5001	Diguanylate cyclase
OCU42_RS12210	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
OCU42_RS12230	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
OCU42_RS12235	COG0741	lytic transglycosylase activity
OCU42_RS12240	COG0488	(ABC) transporter
OCU42_RS12250	COG0287	Prephenate dehydrogenase
OCU42_RS12250	COG1605	Chorismate mutase
OCU42_RS12255	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
OCU42_RS12260	COG3275	phosphorelay sensor kinase activity
OCU42_RS12265	COG3279	Response regulator of the LytR AlgR family
OCU42_RS12275	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
OCU42_RS12280	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
OCU42_RS12290	COG1966	Carbon starvation protein
OCU42_RS12295	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
OCU42_RS12300	COG1047	Peptidyl-prolyl cis-trans
OCU42_RS12305	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
OCU42_RS12310	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
OCU42_RS12315	COG0196	riboflavin kinase activity
OCU42_RS12320	COG0728	peptidoglycan biosynthetic process
OCU42_RS12330	COG0640	Transcriptional regulator
OCU42_RS12335	COG0583	DNA-binding transcription factor activity
OCU42_RS12340	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
OCU42_RS12345	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
OCU42_RS12350	COG0730	response to heat
OCU42_RS12360	COG0494	nUDIX hydrolase
OCU42_RS12365	COG3066	DNA modification
OCU42_RS12370	COG0667	Aldo Keto reductase
OCU42_RS12380	COG2204	response regulator
OCU42_RS12385	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
OCU42_RS12405	COG0513	Belongs to the DEAD box helicase family
OCU42_RS12420	COG0745	RESPONSE REGULATOR receiver
OCU42_RS12435	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
OCU42_RS12440	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
OCU42_RS12480	COG0438	transferase activity, transferring glycosyl groups
OCU42_RS12485	COG1045	serine acetyltransferase
OCU42_RS12490	COG0438	transferase activity, transferring glycosyl groups
OCU42_RS12495	COG1216	Glycosyl transferase, family 2
OCU42_RS12495	COG1442	glycosyl transferase family 8
OCU42_RS12530	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
OCU42_RS12545	COG3153	acetyltransferase
OCU42_RS12550	COG3154	lipid carrier protein
OCU42_RS12560	COG0826	peptidase U32
OCU42_RS12565	COG0826	peptidase U32
OCU42_RS12580	COG1185	polyribonucleotide nucleotidyltransferase activity
OCU42_RS12585	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
OCU42_RS12590	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
OCU42_RS12605	COG0195	Participates in both transcription termination and antitermination
OCU42_RS12610	COG0779	Required for maturation of 30S ribosomal subunits
OCU42_RS12625	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
OCU42_RS12630	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
OCU42_RS12635	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
OCU42_RS12640	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
OCU42_RS12645	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
OCU42_RS12650	COG1534	Rna-binding protein
OCU42_RS12655	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
OCU42_RS12660	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
OCU42_RS12665	COG2027	D-alanyl-D-alanine carboxypeptidase
OCU42_RS12670	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
OCU42_RS12675	COG0739	heme binding
OCU42_RS12680	COG0316	Belongs to the HesB IscA family
OCU42_RS12685	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
OCU42_RS12700	COG0004	ammonium transporteR
OCU42_RS12710	COG3112	Uncharacterised protein family (UPF0231)
OCU42_RS12720	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
OCU42_RS12725	COG1643	Atp-dependent helicase
OCU42_RS12730	COG1489	DNA binding
OCU42_RS12735	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
OCU42_RS12740	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
OCU42_RS12750	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
OCU42_RS12755	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
OCU42_RS12760	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
OCU42_RS12775	COG3386	PFAM SMP-30 Gluconolaconase
OCU42_RS12785	COG1172	Belongs to the binding-protein-dependent transport system permease family
OCU42_RS12790	COG1129	ABC transporter
OCU42_RS12800	COG3623	hexulose-6-phosphate isomerase
OCU42_RS12805	COG1414	Transcriptional regulator
OCU42_RS12810	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
OCU42_RS12825	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
OCU42_RS12830	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
OCU42_RS12835	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
OCU42_RS12845	COG0842	Transport permease protein
OCU42_RS12850	COG1131	(ABC) transporter
OCU42_RS12855	COG0288	reversible hydration of carbon dioxide
OCU42_RS12870	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
OCU42_RS12875	COG0508	dehydrogenase complex catalyzes the overall conversion of
OCU42_RS12880	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
OCU42_RS12885	COG2186	Transcriptional regulator
OCU42_RS12890	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
OCU42_RS12895	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
OCU42_RS12900	COG4974	Belongs to the 'phage' integrase family
OCU42_RS12905	COG0716	FMN binding
OCU42_RS12915	COG0157	Belongs to the NadC ModD family
OCU42_RS12935	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
OCU42_RS12940	COG1459	type II secretion system
OCU42_RS12950	COG0237	dephospho-CoA kinase activity
OCU42_RS12955	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
OCU42_RS12960	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
OCU42_RS12965	COG1595	DNA-templated transcription, initiation
OCU42_RS12980	COG3220	belongs to the UPF0276 family
OCU42_RS12990	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
OCU42_RS13000	COG3150	esterase
OCU42_RS13010	COG3151	Protein conserved in bacteria
OCU42_RS13015	COG0494	nUDIX hydrolase
OCU42_RS13020	COG1538	Outer membrane efflux protein
OCU42_RS13025	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
OCU42_RS13025	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
OCU42_RS13030	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
OCU42_RS13040	COG3025	triphosphatase activity
OCU42_RS13045	COG1392	Phosphate transport regulator
OCU42_RS13050	COG0306	phosphate transporter
OCU42_RS13055	COG4991	sh3 domain protein
OCU42_RS13060	COG0617	tRNA 3'-terminal CCA addition
OCU42_RS13070	COG0504	CTP synthase activity
OCU42_RS13075	COG3956	TIGRFAM MazG family protein
OCU42_RS13080	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
OCU42_RS13090	COG3850	Histidine kinase
OCU42_RS13090	COG4999	Histidine kinase
OCU42_RS13090	COG3437	response regulator, receiver
OCU42_RS13090	COG2205	protein histidine kinase activity
OCU42_RS13100	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
OCU42_RS13105	COG1381	Involved in DNA repair and RecF pathway recombination
OCU42_RS13110	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
OCU42_RS13115	COG0571	ribonuclease III activity
OCU42_RS13125	COG0481	GTPase activity
OCU42_RS13150	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
OCU42_RS13175	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
OCU42_RS13180	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
OCU42_RS13190	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
OCU42_RS13200	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
OCU42_RS13205	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
OCU42_RS13215	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
OCU42_RS13220	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
OCU42_RS13230	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
OCU42_RS13235	COG1012	belongs to the aldehyde dehydrogenase family
OCU42_RS13240	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
OCU42_RS13245	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
OCU42_RS13250	COG0440	acetolactate synthase activity
OCU42_RS13255	COG0028	Belongs to the TPP enzyme family
OCU42_RS13260	COG0583	DNA-binding transcription factor activity
OCU42_RS13275	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
OCU42_RS13280	COG0473	3-isopropylmalate dehydrogenase activity
OCU42_RS13285	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
OCU42_RS13290	COG0066	3-isopropylmalate dehydratase activity
OCU42_RS13360	COG0175	sulfate reduction
OCU42_RS13365	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
OCU42_RS13370	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
OCU42_RS13390	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
OCU42_RS13525	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
OCU42_RS13530	COG2814	Major facilitator Superfamily
OCU42_RS13555	COG0735	belongs to the Fur family
OCU42_RS13585	COG0305	Participates in initiation and elongation during chromosome replication
OCU42_RS13595	COG0359	binds to the 23S rRNA
OCU42_RS13600	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
OCU42_RS13605	COG2965	DNA replication, synthesis of RNA primer
OCU42_RS13610	COG0360	Binds together with S18 to 16S ribosomal RNA
OCU42_RS13630	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
OCU42_RS13635	COG0049	tRNA binding
OCU42_RS13650	COG2923	Belongs to the DsrF TusC family
OCU42_RS13655	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
OCU42_RS13660	COG2964	Protein conserved in bacteria
OCU42_RS13665	COG0545	Peptidyl-prolyl cis-trans isomerase
OCU42_RS13675	COG2900	Belongs to the SlyX family
OCU42_RS13680	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
OCU42_RS13685	COG0330	HflC and HflK could
OCU42_RS13690	COG0330	HflC and HflK could
OCU42_RS13695	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
OCU42_RS13700	COG1923	regulation of RNA biosynthetic process
OCU42_RS13705	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
OCU42_RS13710	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
OCU42_RS13720	COG0802	atpase or kinase
OCU42_RS13725	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
OCU42_RS13755	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
OCU42_RS13760	COG1162	GTPase activity
OCU42_RS13765	COG0688	phosphatidylethanolamine metabolic process
OCU42_RS13770	COG0471	metal ion transport
OCU42_RS13780	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
OCU42_RS13785	COG4942	peptidase
OCU42_RS13795	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
OCU42_RS13800	COG2816	NAD+ diphosphatase activity
OCU42_RS13805	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
OCU42_RS13810	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
OCU42_RS13815	COG0085	RNA polymerase activity
OCU42_RS13825	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
OCU42_RS13830	COG0081	regulation of translation
OCU42_RS13835	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
OCU42_RS13840	COG0250	Participates in transcription elongation, termination and antitermination
OCU42_RS13845	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
OCU42_RS13875	COG1072	(Pantothenic acid kinase))
OCU42_RS13885	COG0812	UDP-N-acetylmuramate dehydrogenase activity
OCU42_RS13895	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
OCU42_RS13910	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
OCU42_RS13910	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
OCU42_RS13925	COG3118	belongs to the thioredoxin family
OCU42_RS13930	COG0513	Belongs to the DEAD box helicase family
OCU42_RS13935	COG0248	Ppx GppA phosphatase
OCU42_RS13940	COG2198	Histidine kinase
OCU42_RS13940	COG0784	Response regulator, receiver
OCU42_RS13940	COG2205	protein histidine kinase activity
OCU42_RS13945	COG2814	Major facilitator Superfamily
OCU42_RS13960	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
OCU42_RS13965	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
OCU42_RS13970	COG0511	ligase activity, forming carbon-carbon bonds
OCU42_RS13975	COG0439	Biotin carboxylase
OCU42_RS13980	COG2264	protein methyltransferase activity
OCU42_RS13990	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
OCU42_RS14010	COG1028	Short-chain dehydrogenase reductase Sdr
OCU42_RS14015	COG1733	regulation of RNA biosynthetic process
OCU42_RS14020	COG0009	L-threonylcarbamoyladenylate synthase
OCU42_RS14030	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
OCU42_RS14040	COG0840	transmembrane signaling receptor activity
OCU42_RS14050	COG0138	bifunctional purine biosynthesis protein purh
OCU42_RS14055	COG0151	Belongs to the GarS family
OCU42_RS14065	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
OCU42_RS14070	COG2183	response to ionizing radiation
OCU42_RS14080	COG0596	Alpha beta hydrolase
OCU42_RS14085	COG1040	competence protein
OCU42_RS14095	COG0494	nUDIX hydrolase
OCU42_RS14100	COG1218	3'(2'),5'-bisphosphate nucleotidase
OCU42_RS14110	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
OCU42_RS14115	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
OCU42_RS14120	COG3156	type II secretion system protein K
OCU42_RS14125	COG4795	General secretion pathway protein
OCU42_RS14130	COG2165	general secretion pathway protein
OCU42_RS14135	COG2165	general secretion pathway protein
OCU42_RS14140	COG2165	general secretion pathway protein
OCU42_RS14145	COG1459	type II secretion system
OCU42_RS14150	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
OCU42_RS14160	COG3031	protein transport across the cell outer membrane
OCU42_RS14165	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
OCU42_RS14175	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
OCU42_RS14185	COG0456	acetyltransferase
OCU42_RS14190	COG1490	D-aminoacyl-tRNA deacylase activity
OCU42_RS14195	COG1295	ribonuclease BN
OCU42_RS14200	COG1217	gtp-binding protein TYPA
OCU42_RS14205	COG0174	glutamine synthetase
OCU42_RS14210	COG3852	Histidine kinase
OCU42_RS14215	COG2204	response regulator
OCU42_RS14275	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
OCU42_RS14280	COG4206	TonB-dependent receptor
OCU42_RS14285	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
OCU42_RS14340	COG2084	Dehydrogenase
OCU42_RS14345	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCU42_RS14350	COG1349	DNA-binding transcription factor activity
OCU42_RS14375	COG1501	Belongs to the glycosyl hydrolase 31 family
OCU42_RS14380	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
OCU42_RS14385	COG0583	DNA-binding transcription factor activity
OCU42_RS14405	COG0477	Major facilitator Superfamily
OCU42_RS14410	COG1132	(ABC) transporter
OCU42_RS14415	COG1132	(ABC) transporter
OCU42_RS14420	COG1309	transcriptional regulator
OCU42_RS14430	COG3501	Rhs element vgr protein
OCU42_RS14455	COG3501	Rhs element vgr protein
OCU42_RS14515	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
OCU42_RS14520	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
OCU42_RS14525	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
OCU42_RS14530	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
OCU42_RS14535	COG2937	Belongs to the GPAT DAPAT family
OCU42_RS14540	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
OCU42_RS14545	COG3161	chorismate lyase activity
OCU42_RS14560	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
OCU42_RS14575	COG2177	Part of the ABC transporter FtsEX involved in
OCU42_RS14580	COG2884	Cell division ATP-binding protein ftsE
OCU42_RS14585	COG0552	protein localization to endoplasmic reticulum
OCU42_RS14590	COG0742	ribosomal rna small subunit methyltransferase
OCU42_RS14595	COG2095	MarC family integral membrane protein
OCU42_RS14615	COG0783	Belongs to the Dps family
OCU42_RS14620	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
OCU42_RS14625	COG1280	lysine exporter protein (LysE YggA)
OCU42_RS14630	COG2267	carboxylic ester hydrolase activity
OCU42_RS14635	COG0561	phosphatase activity
OCU42_RS14650	COG2977	Belongs to the P-Pant transferase superfamily
OCU42_RS14665	COG3148	PFAM DTW domain containing protein
OCU42_RS14670	COG1011	Hydrolase
OCU42_RS14675	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
OCU42_RS14685	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
OCU42_RS14690	COG0019	diaminopimelate decarboxylase activity
OCU42_RS14705	COG3072	Adenylate cyclase
OCU42_RS14710	COG0181	hydroxymethylbilane synthase activity
OCU42_RS14720	COG2959	enzyme of heme biosynthesis
OCU42_RS14725	COG3071	HemY protein
OCU42_RS14730	COG0635	Involved in the biosynthesis of porphyrin-containing compound
OCU42_RS14740	COG3078	GTPase activator activity
OCU42_RS14750	COG0218	Necessary for normal cell division and for the maintenance of normal septation
OCU42_RS14755	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
OCU42_RS14755	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
OCU42_RS14765	COG0084	hydrolase, TatD family'
OCU42_RS14770	COG0805	protein transport
OCU42_RS14775	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
OCU42_RS14780	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
OCU42_RS14785	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
OCU42_RS14790	COG3165	ubiquinone biosynthetic process from chorismate
OCU42_RS14795	COG2226	methyltransferase
OCU42_RS14800	COG1322	Protein conserved in bacteria
OCU42_RS14825	COG2160	L-arabinose isomerase activity
OCU42_RS14835	COG1069	ribulokinase activity
OCU42_RS14840	COG1879	ABC-type sugar transport system periplasmic component
OCU42_RS14845	COG1129	ABC transporter
OCU42_RS14850	COG1172	Belongs to the binding-protein-dependent transport system permease family
OCU42_RS14915	COG0583	DNA-binding transcription factor activity
OCU42_RS14930	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
OCU42_RS14935	COG0028	Belongs to the TPP enzyme family
OCU42_RS14945	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
OCU42_RS14945	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
OCU42_RS14970	COG0702	epimerase
OCU42_RS14980	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
OCU42_RS15005	COG0583	DNA-binding transcription factor activity
OCU42_RS15010	COG1486	melibiose metabolic process
OCU42_RS15015	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
OCU42_RS15025	COG4948	Mandelate Racemase Muconate Lactonizing
OCU42_RS15030	COG1447	Phosphotransferase system cellobiose-specific component IIA
OCU42_RS15040	COG2081	HI0933 family
OCU42_RS15050	COG1528	Iron-storage protein
OCU42_RS15055	COG0589	response to stress
OCU42_RS15075	COG1522	sequence-specific DNA binding
OCU42_RS15085	COG0006	proline dipeptidase activity
OCU42_RS15095	COG1012	belongs to the aldehyde dehydrogenase family
OCU42_RS15115	COG4175	Glycine betaine
OCU42_RS15120	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
OCU42_RS15125	COG2022	thiamine diphosphate biosynthetic process
OCU42_RS15130	COG2104	thiamine diphosphate biosynthetic process
OCU42_RS15135	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
OCU42_RS15140	COG0352	thiamine-phosphate diphosphorylase activity
OCU42_RS15150	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
OCU42_RS15155	COG3940	Belongs to the glycosyl hydrolase 43 family
OCU42_RS15160	COG2211	Major facilitator Superfamily
OCU42_RS15205	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
OCU42_RS15210	COG1739	Uncharacterized protein family UPF0029
OCU42_RS15215	COG1024	Enoyl-CoA hydratase
OCU42_RS15215	COG1250	3-hydroxyacyl-CoA dehydrogenase
OCU42_RS15235	COG0355	proton-transporting ATP synthase activity, rotational mechanism
OCU42_RS15240	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
OCU42_RS15245	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
OCU42_RS15250	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
OCU42_RS15255	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
OCU42_RS15260	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
OCU42_RS15270	COG0356	it plays a direct role in the translocation of protons across the membrane
OCU42_RS15280	COG1475	DNA binding
OCU42_RS15285	COG1192	Involved in chromosome partitioning
OCU42_RS15295	COG0445	tRNA wobble uridine modification
OCU42_RS15310	COG1444	tRNA N-acetyltransferase activity
OCU42_RS15345	COG0515	serine threonine protein kinase
OCU42_RS15345	COG1262	PFAM Formylglycine-generating sulfatase enzyme
OCU42_RS15370	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
OCU42_RS15380	COG3722	fumarate hydratase activity
OCU42_RS15390	COG2213	PTS system mannitol-specific
OCU42_RS15390	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
OCU42_RS15395	COG3085	chromosome segregation
OCU42_RS15405	COG2259	Doxx family
OCU42_RS15440	COG2272	Belongs to the type-B carboxylesterase lipase family
OCU42_RS15450	COG1621	beta-fructofuranosidase activity
OCU42_RS15460	COG2188	Transcriptional regulator
OCU42_RS15500	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
OCU42_RS15505	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
OCU42_RS15510	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
OCU42_RS15515	COG1120	ATPase activity
OCU42_RS15530	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
OCU42_RS15535	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
OCU42_RS15540	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
OCU42_RS15545	COG0247	lactate metabolic process
OCU42_RS15555	COG1609	Transcriptional regulator
OCU42_RS15560	COG0840	transmembrane signaling receptor activity
OCU42_RS15630	COG3829	transcription factor binding
OCU42_RS15655	COG3547	Transposase (IS116 IS110 IS902 family)
OCU42_RS15685	COG1022	Amp-dependent synthetase and ligase
OCU42_RS15705	COG0642	Histidine kinase
OCU42_RS15715	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
OCU42_RS15720	COG0456	acetyltransferase
OCU42_RS15725	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
OCU42_RS15730	COG0662	Cupin 2, conserved barrel domain protein
OCU42_RS15735	COG0527	aspartate kinase activity
OCU42_RS15740	COG0252	asparaginase activity
OCU42_RS15750	COG0840	transmembrane signaling receptor activity
OCU42_RS15755	COG1741	Belongs to the pirin family
OCU42_RS15765	COG0668	transmembrane transport
OCU42_RS15775	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
OCU42_RS15800	COG5001	Diguanylate cyclase
OCU42_RS15800	COG3300	MHYT domain
OCU42_RS15815	COG0784	Response regulator, receiver
OCU42_RS15815	COG0835	chemotaxis
OCU42_RS15825	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
OCU42_RS15835	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
OCU42_RS15850	COG0583	DNA-binding transcription factor activity
OCU42_RS15855	COG1486	melibiose metabolic process
OCU42_RS15860	COG3530	Putative quorum-sensing-regulated virulence factor
OCU42_RS15865	COG4104	PAAR repeat-containing protein
OCU42_RS15880	COG3385	transposase activity
OCU42_RS15890	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
OCU42_RS15900	COG1846	Transcriptional regulator
OCU42_RS15905	COG1764	response to oxidative stress
OCU42_RS15910	COG3118	belongs to the thioredoxin family
OCU42_RS15925	COG0840	transmembrane signaling receptor activity
OCU42_RS15940	COG4215	(ABC) transporter
OCU42_RS15945	COG4160	amino acid transport
OCU42_RS15950	COG4598	ABC transporter
OCU42_RS15960	COG1280	lysine exporter protein (LysE YggA)
OCU42_RS15975	COG0077	Prephenate dehydratase
OCU42_RS15980	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
OCU42_RS16000	COG1522	sequence-specific DNA binding
OCU42_RS16005	COG2211	Major facilitator Superfamily
OCU42_RS16010	COG3250	beta-galactosidase activity
OCU42_RS16045	COG0714	Associated with various cellular activities
OCU42_RS16055	COG0840	transmembrane signaling receptor activity
OCU42_RS16075	COG2195	Cleaves the N-terminal amino acid of tripeptides
OCU42_RS16085	COG3604	Transcriptional regulator
OCU42_RS16090	COG1278	Cold shock
OCU42_RS16095	COG3036	rescue of stalled ribosome
OCU42_RS16105	COG3437	response regulator, receiver
OCU42_RS16105	COG4999	Histidine kinase
OCU42_RS16105	COG2205	protein histidine kinase activity
OCU42_RS16105	COG3850	Histidine kinase
OCU42_RS16115	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
OCU42_RS16115	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
OCU42_RS16125	COG0516	GMP reductase activity
OCU42_RS16140	COG0604	alcohol dehydrogenase
OCU42_RS16140	COG3321	synthase
OCU42_RS16150	COG0604	alcohol dehydrogenase
OCU42_RS16150	COG3321	synthase
OCU42_RS16155	COG3321	synthase
OCU42_RS16155	COG1028	Short-chain dehydrogenase reductase Sdr
OCU42_RS16155	COG0604	alcohol dehydrogenase
OCU42_RS16160	COG0604	alcohol dehydrogenase
OCU42_RS16160	COG3321	synthase
OCU42_RS16165	COG0604	alcohol dehydrogenase
OCU42_RS16165	COG3321	synthase
OCU42_RS16180	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
OCU42_RS16220	COG3501	Rhs element vgr protein
OCU42_RS16225	COG3409	Peptidoglycan-binding domain 1 protein
OCU42_RS16225	COG3501	Rhs element vgr protein
OCU42_RS16255	COG3501	Rhs element vgr protein
OCU42_RS16285	COG3693	PFAM glycoside hydrolase, family 10
OCU42_RS16285	COG3509	depolymerase
OCU42_RS16290	COG0384	phenazine biosynthesis protein PhzF
OCU42_RS16330	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
OCU42_RS16360	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
OCU42_RS16440	COG1278	Cold shock
OCU42_RS16450	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
OCU42_RS16455	COG1028	Short-chain dehydrogenase reductase Sdr
OCU42_RS16480	COG4608	Belongs to the ABC transporter superfamily
OCU42_RS16485	COG0444	Belongs to the ABC transporter superfamily
OCU42_RS16490	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
OCU42_RS16500	COG0747	negative chemotaxis
OCU42_RS16510	COG2207	Transcriptional regulator
OCU42_RS16535	COG0583	DNA-binding transcription factor activity
OCU42_RS16540	COG2814	Major facilitator Superfamily
OCU42_RS16555	COG2329	Antibiotic biosynthesis monooxygenase
OCU42_RS16640	COG1280	lysine exporter protein (LysE YggA)
OCU42_RS16650	COG0681	Belongs to the peptidase S26 family
OCU42_RS16665	COG3842	ATPase activity
OCU42_RS16670	COG0395	ABC-type sugar transport system, permease component
OCU42_RS16675	COG1175	transmembrane transport
OCU42_RS16685	COG0584	glycerophosphoryl diester phosphodiesterase
OCU42_RS16690	COG1349	DNA-binding transcription factor activity
OCU42_RS16695	COG0077	Prephenate dehydratase
OCU42_RS16695	COG1605	Chorismate mutase
OCU42_RS16700	COG3284	Transcriptional regulator
OCU42_RS16705	COG1012	belongs to the aldehyde dehydrogenase family
OCU42_RS16715	COG3477	response to acidic pH
OCU42_RS16725	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
OCU42_RS16735	COG2211	Major facilitator Superfamily
OCU42_RS16755	COG1289	transmembrane transporter activity
OCU42_RS16760	COG1566	PFAM secretion protein HlyD family protein
OCU42_RS16780	COG2017	converts alpha-aldose to the beta-anomer
OCU42_RS16830	COG0659	secondary active sulfate transmembrane transporter activity
OCU42_RS16835	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
OCU42_RS16845	COG1053	succinate dehydrogenase
OCU42_RS16845	COG3976	FMN-binding domain protein
OCU42_RS16845	COG0431	NADPH-dependent FMN reductase
OCU42_RS16855	COG0583	DNA-binding transcription factor activity
OCU42_RS16930	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
OCU42_RS16930	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
OCU42_RS16935	COG0509	glycine decarboxylation via glycine cleavage system
OCU42_RS16945	COG0404	The glycine cleavage system catalyzes the degradation of glycine
OCU42_RS16955	COG5001	Diguanylate cyclase
OCU42_RS16955	COG3300	MHYT domain
OCU42_RS16970	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
OCU42_RS16975	COG0840	transmembrane signaling receptor activity
OCU42_RS16980	COG1609	Transcriptional regulator
OCU42_RS17000	COG2723	6-phospho-beta-galactosidase activity
OCU42_RS17005	COG3842	ATPase activity
OCU42_RS17010	COG3459	Glycosyltransferase 36 associated
OCU42_RS17020	COG1609	Transcriptional regulator
OCU42_RS17025	COG5297	Belongs to the glycosyl hydrolase family 6
OCU42_RS17025	COG2273	Hydrolase Family 16
OCU42_RS17060	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
OCU42_RS17070	COG4181	ATPase activity
OCU42_RS17125	COG5297	Belongs to the glycosyl hydrolase family 6
OCU42_RS17125	COG2273	Hydrolase Family 16
OCU42_RS17130	COG0488	(ABC) transporter
OCU42_RS17140	COG0583	DNA-binding transcription factor activity
OCU42_RS17160	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
OCU42_RS17165	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
OCU42_RS17185	COG2425	protein containing a von Willebrand factor type A (vWA) domain
OCU42_RS17190	COG3713	MltA-interacting MipA family protein
OCU42_RS17195	COG1584	GPR1 FUN34 yaaH family protein
OCU42_RS17200	COG0625	glutathione transferase activity
OCU42_RS17230	COG0494	nUDIX hydrolase
OCU42_RS17240	COG0678	peroxiredoxin activity
OCU42_RS17245	COG2926	Belongs to the UPF0265 family
OCU42_RS17255	COG3132	Protein of unknown function, DUF480
OCU42_RS17260	COG2827	Endonuclease containing a URI domain
OCU42_RS17275	COG1879	ABC-type sugar transport system periplasmic component
OCU42_RS17280	COG0784	Response regulator, receiver
OCU42_RS17280	COG5002	protein histidine kinase activity
OCU42_RS17290	COG1492	cobalamin metabolic process
OCU42_RS17305	COG1289	transmembrane transporter activity
OCU42_RS17310	COG0210	DNA helicase
OCU42_RS17315	COG1803	Methylglyoxal synthase
OCU42_RS17320	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
OCU42_RS17335	COG0183	Belongs to the thiolase family
OCU42_RS17350	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
OCU42_RS17355	COG0523	cobalamin synthesis protein
OCU42_RS17365	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
OCU42_RS17380	COG0513	Belongs to the DEAD box helicase family
OCU42_RS17385	COG0840	transmembrane signaling receptor activity
OCU42_RS17390	COG2723	6-phospho-beta-galactosidase activity
OCU42_RS17400	COG1063	alcohol dehydrogenase
OCU42_RS17405	COG0840	transmembrane signaling receptor activity
OCU42_RS17410	COG5001	Diguanylate cyclase
OCU42_RS17410	COG3300	MHYT domain
OCU42_RS17415	COG2816	NAD+ diphosphatase activity
OCU42_RS17420	COG3385	transposase activity
OCU42_RS17425	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
OCU42_RS17440	COG4943	cyclic-guanylate-specific phosphodiesterase activity
OCU42_RS17450	COG3507	Belongs to the glycosyl hydrolase 43 family
OCU42_RS17460	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
OCU42_RS17460	COG3153	acetyltransferase
OCU42_RS17470	COG0513	Belongs to the DEAD box helicase family
OCU42_RS17475	COG0513	Belongs to the DEAD box helicase family
OCU42_RS17490	COG4319	ketosteroid isomerase
OCU42_RS17495	COG0243	molybdopterin cofactor binding
OCU42_RS17510	COG3634	alkyl hydroperoxide reductase activity
OCU42_RS17520	COG1063	alcohol dehydrogenase
OCU42_RS17525	COG2211	Major facilitator Superfamily
OCU42_RS17530	COG1397	ADP-ribosylglycohydrolase
OCU42_RS17535	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCU42_RS17540	COG2188	Transcriptional regulator
OCU42_RS17570	COG1328	CTP reductase activity
OCU42_RS17575	COG0602	queuosine metabolic process
OCU42_RS17585	COG1538	Outer membrane efflux protein
OCU42_RS17595	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
OCU42_RS17610	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
OCU42_RS17620	COG0402	S-adenosylhomocysteine deaminase activity
OCU42_RS17655	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
OCU42_RS17670	COG2169	Transcriptional regulator
OCU42_RS17680	COG1960	acyl-CoA dehydrogenase activity
OCU42_RS17710	COG2192	nodulation
OCU42_RS17725	COG3706	GGDEF domain
OCU42_RS17740	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
OCU42_RS17745	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
OCU42_RS17790	COG0023	Translation Initiation Factor
OCU42_RS17815	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
OCU42_RS17815	COG0045	succinate-CoA ligase (ADP-forming) activity
OCU42_RS17815	COG1042	CoA-binding domain protein
OCU42_RS17820	COG0583	DNA-binding transcription factor activity
OCU42_RS17825	COG4533	DNA binding
OCU42_RS17830	COG2050	protein possibly involved in aromatic compounds catabolism
OCU42_RS17835	COG2824	Alkylphosphonate utilization operon protein PhnA
OCU42_RS17845	COG0737	Belongs to the 5'-nucleotidase family
OCU42_RS17850	COG3593	DNA synthesis involved in DNA repair
OCU42_RS17855	COG0583	DNA-binding transcription factor activity
OCU42_RS17865	COG2353	YceI-like domain
OCU42_RS17870	COG3038	cytochrome b561
OCU42_RS17885	COG4172	Belongs to the ABC transporter superfamily
OCU42_RS17890	COG4239	(ABC) transporter, permease
OCU42_RS17895	COG4174	ABC transporter (Permease)
OCU42_RS17900	COG4166	transmembrane transport
OCU42_RS17905	COG1051	belongs to the nudix hydrolase family
OCU42_RS17920	COG1011	Hydrolase
OCU42_RS17925	COG0583	DNA-binding transcription factor activity
OCU42_RS17930	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
OCU42_RS17960	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
OCU42_RS17965	COG2897	thiosulfate sulfurtransferase activity
OCU42_RS17980	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
OCU42_RS17990	COG0545	Peptidyl-prolyl cis-trans isomerase
OCU42_RS17995	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
OCU42_RS18015	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
OCU42_RS18020	COG0291	Belongs to the bacterial ribosomal protein bL35 family
OCU42_RS18185	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
OCU42_RS18190	COG2515	1-aminocyclopropane-1-carboxylate deaminase
OCU42_RS18195	COG1522	sequence-specific DNA binding
OCU42_RS18215	COG1121	(ABC) transporter
OCU42_RS18220	COG1108	ABC-type Mn2 Zn2 transport systems permease components
OCU42_RS18225	COG1108	ABC-type Mn2 Zn2 transport systems permease components
OCU42_RS18230	COG2985	domain, Protein
OCU42_RS18235	COG1609	Transcriptional regulator
OCU42_RS18240	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
OCU42_RS18245	COG1879	ABC-type sugar transport system periplasmic component
OCU42_RS18250	COG1172	Belongs to the binding-protein-dependent transport system permease family
OCU42_RS18260	COG1869	D-ribose catabolic process
OCU42_RS18300	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
OCU42_RS18305	COG1518	maintenance of DNA repeat elements
OCU42_RS18335	COG1203	CRISPR-associated helicase, Cas3
OCU42_RS18375	COG1509	lysine 2,3-aminomutase activity
OCU42_RS18380	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
OCU42_RS18390	COG2366	antibiotic biosynthetic process
OCU42_RS18405	COG1609	Transcriptional regulator
OCU42_RS18410	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
OCU42_RS18410	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
OCU42_RS18415	COG1105	Belongs to the carbohydrate kinase PfkB family
OCU42_RS18420	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
OCU42_RS18420	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
OCU42_RS18420	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
OCU42_RS18425	COG3693	PFAM glycoside hydrolase, family 10
OCU42_RS18435	COG1929	Belongs to the glycerate kinase type-1 family
OCU42_RS18450	COG0446	pyridine nucleotide-disulphide oxidoreductase
OCU42_RS18450	COG1902	pentaerythritol trinitrate reductase activity
OCU42_RS18460	COG0784	Response regulator, receiver
OCU42_RS18465	COG4251	negative regulation of phosphorylation
OCU42_RS18490	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
OCU42_RS18495	COG3104	oligopeptide transport
OCU42_RS18500	COG1070	Carbohydrate kinase
OCU42_RS18505	COG1609	Transcriptional regulator
OCU42_RS18505	COG2207	Transcriptional regulator
OCU42_RS18510	COG0477	Major facilitator Superfamily
OCU42_RS18510	COG2814	Major facilitator Superfamily
OCU42_RS18515	COG2115	Belongs to the xylose isomerase family
OCU42_RS18545	COG0697	spore germination
OCU42_RS18585	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
OCU42_RS18605	COG1737	Transcriptional regulator
OCU42_RS18610	COG1126	abc transporter atp-binding protein
OCU42_RS18615	COG0765	amino acid transport
OCU42_RS18620	COG0765	amino acid transport
OCU42_RS18625	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCU42_RS18630	COG1953	Uracil, thiamine, allantoin
OCU42_RS18695	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
OCU42_RS18740	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
OCU42_RS18750	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
OCU42_RS18765	COG3711	transcriptional antiterminator
OCU42_RS18780	COG0110	maltose O-acetyltransferase activity
OCU42_RS18785	COG0561	phosphatase activity
OCU42_RS18790	COG1349	DNA-binding transcription factor activity
OCU42_RS18800	COG3209	COG3209 Rhs family protein
OCU42_RS18810	COG3209	COG3209 Rhs family protein
OCU42_RS18830	COG0419	ATPase involved in DNA repair
OCU42_RS18855	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
OCU42_RS18900	COG0454	-acetyltransferase
OCU42_RS18930	COG2205	protein histidine kinase activity
OCU42_RS18930	COG0784	Response regulator, receiver
OCU42_RS18935	COG0156	8-amino-7-oxononanoate synthase activity
OCU42_RS18945	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
OCU42_RS18980	COG5002	protein histidine kinase activity
OCU42_RS18990	COG2988	succinylglutamate desuccinylase activity
OCU42_RS18995	COG3724	N-succinylarginine dihydrolase activity
OCU42_RS19000	COG1012	belongs to the aldehyde dehydrogenase family
OCU42_RS19015	COG4305	rare lipoprotein A
OCU42_RS19020	COG1064	alcohol dehydrogenase
OCU42_RS19035	COG0673	inositol 2-dehydrogenase activity
OCU42_RS19040	COG2991	Protein conserved in bacteria
OCU42_RS19050	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
OCU42_RS19055	COG0784	Response regulator, receiver
OCU42_RS19055	COG3437	response regulator, receiver
OCU42_RS19060	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
OCU42_RS19065	COG0363	glucosamine-6-phosphate deaminase activity
OCU42_RS19070	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
OCU42_RS19085	COG0189	ligase activity
OCU42_RS19085	COG0569	domain protein
OCU42_RS19120	COG2026	Addiction module toxin, RelE StbE family
OCU42_RS19145	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
OCU42_RS19145	COG0646	methionine synthase
OCU42_RS19150	COG0840	transmembrane signaling receptor activity
OCU42_RS19185	COG0633	Ferredoxin
OCU42_RS19185	COG3217	Mosc domain protein beta barrel domain protein
OCU42_RS19185	COG0633	Ferredoxin
OCU42_RS19185	COG3217	Mosc domain protein beta barrel domain protein
OCU42_RS19190	COG0418	dihydroorotase activity
OCU42_RS19200	COG0840	transmembrane signaling receptor activity
OCU42_RS19210	COG1280	lysine exporter protein (LysE YggA)
OCU42_RS19220	COG2354	Protein conserved in bacteria
OCU42_RS19230	COG1765	OsmC-like protein
OCU42_RS19240	COG5002	protein histidine kinase activity
OCU42_RS19240	COG2205	protein histidine kinase activity
OCU42_RS19240	COG0784	Response regulator, receiver
OCU42_RS19255	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
OCU42_RS19260	COG1151	hydroxylamine reductase activity
OCU42_RS19270	COG0534	Mate efflux family protein
OCU42_RS19275	COG1979	alcohol dehydrogenase
OCU42_RS19280	COG0346	lactoylglutathione lyase activity
OCU42_RS19290	COG0840	transmembrane signaling receptor activity
OCU42_RS19330	COG3501	Rhs element vgr protein
OCU42_RS19385	COG1484	DNA-dependent DNA replication
OCU42_RS19455	COG2095	MarC family integral membrane protein
OCU42_RS19470	COG2723	6-phospho-beta-galactosidase activity
OCU42_RS19475	COG3711	transcriptional antiterminator
OCU42_RS19480	COG2190	(PTS) system
OCU42_RS19480	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
OCU42_RS19480	COG1263	PTS System
OCU42_RS19485	COG2190	(PTS) system
OCU42_RS19485	COG1263	PTS System
OCU42_RS19485	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
OCU42_RS19495	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
OCU42_RS19500	COG0179	Fumarylacetoacetate (FAA) hydrolase
OCU42_RS19520	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
OCU42_RS19525	COG0583	DNA-binding transcription factor activity
OCU42_RS19530	COG0667	Aldo Keto reductase
OCU42_RS19535	COG0583	DNA-binding transcription factor activity
OCU42_RS19540	COG2814	Major facilitator Superfamily
OCU42_RS19545	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
OCU42_RS19550	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
OCU42_RS19560	COG5001	Diguanylate cyclase
OCU42_RS19565	COG0739	heme binding
OCU42_RS19575	COG3314	Sporulation integral membrane protein YlbJ
OCU42_RS19580	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
OCU42_RS19585	COG0581	inorganic phosphate transmembrane transporter activity
OCU42_RS19590	COG0573	inorganic phosphate transmembrane transporter activity
OCU42_RS19600	COG0840	transmembrane signaling receptor activity
OCU42_RS19605	COG0513	Belongs to the DEAD box helicase family
OCU42_RS19615	COG1376	ErfK ybiS ycfS ynhG family protein
OCU42_RS19615	COG1388	LysM domain
OCU42_RS19620	COG0415	Belongs to the DNA photolyase family
OCU42_RS19625	COG0789	Transcriptional regulator
OCU42_RS19640	COG3706	GGDEF domain
OCU42_RS19655	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
OCU42_RS19670	COG1132	(ABC) transporter
OCU42_RS19675	COG4399	Belongs to the UPF0754 family
OCU42_RS19680	COG0840	transmembrane signaling receptor activity
OCU42_RS19700	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
OCU42_RS19710	COG3547	Transposase (IS116 IS110 IS902 family)
OCU42_RS19715	COG1609	Transcriptional regulator
OCU42_RS19720	COG3265	gluconokinase activity
OCU42_RS19725	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
OCU42_RS19725	COG1263	PTS System
OCU42_RS19730	COG2723	6-phospho-beta-galactosidase activity
OCU42_RS19760	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
OCU42_RS19780	COG1051	belongs to the nudix hydrolase family
OCU42_RS19785	COG2944	sequence-specific DNA binding
OCU42_RS19805	COG0471	metal ion transport
OCU42_RS19825	COG0583	DNA-binding transcription factor activity
OCU42_RS19830	COG1620	l-lactate permease
OCU42_RS19840	COG1139	Iron-sulfur cluster binding protein
OCU42_RS19855	COG2264	protein methyltransferase activity
OCU42_RS19865	COG1785	Belongs to the alkaline phosphatase family
OCU42_RS19900	COG0523	cobalamin synthesis protein
OCU42_RS19920	COG3209	COG3209 Rhs family protein
OCU42_RS19920	COG3209	COG3209 Rhs family protein
OCU42_RS19955	COG3501	Rhs element vgr protein
OCU42_RS19970	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
OCU42_RS19970	COG4191	Histidine kinase
OCU42_RS19980	COG0784	Response regulator, receiver
OCU42_RS19980	COG3437	response regulator, receiver
OCU42_RS19985	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
OCU42_RS19990	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
OCU42_RS19995	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
OCU42_RS20000	COG3338	carbonate dehydratase activity
OCU42_RS20015	COG4175	Glycine betaine
OCU42_RS20020	COG4176	ABC-type proline glycine betaine transport system permease component
OCU42_RS20025	COG2113	Glycine betaine
OCU42_RS20030	COG2239	Acts as a magnesium transporter
OCU42_RS20050	COG0511	ligase activity, forming carbon-carbon bonds
OCU42_RS20060	COG1984	allophanate hydrolase subunit 2
OCU42_RS20065	COG2818	Glycosylase
OCU42_RS20085	COG1940	carbohydrate kinase activity
OCU42_RS20090	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
OCU42_RS20100	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
OCU42_RS20105	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
OCU42_RS20110	COG0534	Mate efflux family protein
OCU42_RS20115	COG1067	ATP-dependent peptidase activity
OCU42_RS20125	COG0454	-acetyltransferase
OCU42_RS20140	COG1794	racemase activity, acting on amino acids and derivatives
OCU42_RS20150	COG5520	Belongs to the glycosyl hydrolase 30 family
OCU42_RS20160	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
OCU42_RS20165	COG0163	prenyltransferase activity
OCU42_RS20195	COG0277	FAD linked oxidase domain protein
OCU42_RS20195	COG0247	lactate metabolic process
OCU42_RS20200	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
OCU42_RS20255	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
OCU42_RS20260	COG1640	4-alpha-glucanotransferase
OCU42_RS20265	COG0058	SHG alpha-glucan phosphorylase activity
OCU42_RS20270	COG0109	protoheme IX farnesyltransferase activity
OCU42_RS20275	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
OCU42_RS20280	COG1845	cytochrome c oxidase, subunit III
OCU42_RS20285	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
OCU42_RS20290	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
OCU42_RS20295	COG0217	transcriptional regulatory protein