locus-tag class description VS_RS00005 PF00258 Flavodoxin VS_RS00010 PF10396 GTP-binding protein TrmE N-terminus VS_RS00010 PF12631 MnmE helical domain VS_RS00010 PF01926 50S ribosome-binding GTPase VS_RS00015 PF02096 60Kd inner membrane protein VS_RS00015 PF14849 YidC periplasmic domain VS_RS00020 PF00825 Ribonuclease P VS_RS00025 PF00468 Ribosomal protein L34 VS_RS00030 PF00005 ABC transporter VS_RS00035 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS00040 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_RS00045 PF08299 Bacterial dnaA protein helix-turn-helix VS_RS00045 PF00308 Bacterial dnaA protein VS_RS00045 PF11638 DnaA N-terminal domain VS_RS00050 PF02767 DNA polymerase III beta subunit, central domain VS_RS00050 PF00712 DNA polymerase III beta subunit, N-terminal domain VS_RS00050 PF02768 DNA polymerase III beta subunit, C-terminal domain VS_RS00055 PF02463 RecF/RecN/SMC N terminal domain VS_RS00060 PF00204 DNA gyrase B VS_RS00060 PF01751 Toprim domain VS_RS00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS00060 PF18053 DNA gyrase B subunit insert domain VS_RS00060 PF00986 DNA gyrase B subunit, carboxyl terminus VS_RS00065 PF00011 Hsp20/alpha crystallin family VS_RS00070 PF00155 Aminotransferase class I and II VS_RS00090 PF13629 Pilus formation protein N terminal region VS_RS00090 PF00263 Bacterial type II and III secretion system protein VS_RS00090 PF04972 BON domain VS_RS00105 PF00437 Type II/IV secretion system protein VS_RS00140 PF00691 OmpA family VS_RS00145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS00150 PF00072 Response regulator receiver domain VS_RS00150 PF00486 Transcriptional regulatory protein, C terminal VS_RS00155 PF02092 Glycyl-tRNA synthetase beta subunit VS_RS00155 PF05746 DALR anticodon binding domain VS_RS00160 PF02091 Glycyl-tRNA synthetase alpha subunit VS_RS00165 PF01169 Uncharacterized protein family UPF0016 VS_RS00175 PF01206 Sulfurtransferase TusA VS_RS00185 PF03466 LysR substrate binding domain VS_RS00185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS00190 PF08240 Alcohol dehydrogenase GroES-like domain VS_RS00190 PF00107 Zinc-binding dehydrogenase VS_RS00195 PF02803 Thiolase, C-terminal domain VS_RS00195 PF00108 Thiolase, N-terminal domain VS_RS00200 PF00378 Enoyl-CoA hydratase/isomerase VS_RS00200 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VS_RS00200 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VS_RS00205 PF09186 Domain of unknown function (DUF1949) VS_RS00205 PF01205 Uncharacterized protein family UPF0029 VS_RS00210 PF02386 Cation transport protein VS_RS00215 PF12724 Flavodoxin domain VS_RS00260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS00260 PF03466 LysR substrate binding domain VS_RS00265 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VS_RS00265 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VS_RS00270 PF04380 Membrane fusogenic activity VS_RS00275 PF00873 AcrB/AcrD/AcrF family VS_RS00280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VS_RS00285 PF00440 Bacterial regulatory proteins, tetR family VS_RS00290 PF00580 UvrD/REP helicase N-terminal domain VS_RS00290 PF13361 UvrD-like helicase C-terminal domain VS_RS00295 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VS_RS00325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_RS00325 PF00005 ABC transporter VS_RS00330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_RS00335 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS00340 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS00340 PF12911 N-terminal TM domain of oligopeptide transport permease C VS_RS00350 PF03116 NQR2, RnfD, RnfE family VS_RS00365 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_RS00365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_RS00370 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VS_RS00375 PF01432 Peptidase family M3 VS_RS00380 PF01037 Lrp/AsnC ligand binding domain VS_RS00385 PF00563 EAL domain VS_RS00385 PF00990 Diguanylate cyclase, GGDEF domain VS_RS00385 PF08448 PAS fold VS_RS00390 PF04445 Putative SAM-dependent methyltransferase VS_RS00400 PF00892 EamA-like transporter family VS_RS00405 PF00582 Universal stress protein family VS_RS00410 PF00210 Ferritin-like domain VS_RS00415 PF10625 Universal stress protein B (UspB) VS_RS00435 PF02646 RmuC family VS_RS00440 PF01209 ubiE/COQ5 methyltransferase family VS_RS00445 PF02036 SCP-2 sterol transfer family VS_RS00450 PF03109 ABC1 family VS_RS00455 PF02416 mttA/Hcf106 family VS_RS00460 PF02416 mttA/Hcf106 family VS_RS00465 PF00902 Sec-independent protein translocase protein (TatC) VS_RS00470 PF01026 TatD related DNase VS_RS00475 PF00490 Delta-aminolevulinic acid dehydratase VS_RS00485 PF01612 3'-5' exonuclease VS_RS00485 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VS_RS00485 PF01367 5'-3' exonuclease, C-terminal SAM fold VS_RS00485 PF00476 DNA polymerase family A VS_RS00495 PF01926 50S ribosome-binding GTPase VS_RS00500 PF00034 Cytochrome c VS_RS00510 PF04220 Der GTPase activator (YihI) VS_RS00515 PF10675 Protein of unknown function (DUF2489) VS_RS00520 PF06969 HemN C-terminal domain VS_RS00520 PF04055 Radical SAM superfamily VS_RS00525 PF03707 Bacterial signalling protein N terminal repeat VS_RS00525 PF00990 Diguanylate cyclase, GGDEF domain VS_RS00525 PF00563 EAL domain VS_RS00530 PF00072 Response regulator receiver domain VS_RS00530 PF00158 Sigma-54 interaction domain VS_RS00530 PF02954 Bacterial regulatory protein, Fis family VS_RS00535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS00535 PF00989 PAS fold VS_RS00535 PF00512 His Kinase A (phospho-acceptor) domain VS_RS00545 PF00120 Glutamine synthetase, catalytic domain VS_RS00545 PF03951 Glutamine synthetase, beta-Grasp domain VS_RS00550 PF03144 Elongation factor Tu domain 2 VS_RS00550 PF00009 Elongation factor Tu GTP binding domain VS_RS00550 PF00679 Elongation factor G C-terminus VS_RS00565 PF03631 Virulence factor BrkB VS_RS00570 PF02580 D-Tyr-tRNA(Tyr) deacylase VS_RS00575 PF00583 Acetyltransferase (GNAT) family VS_RS00575 PF09500 Putative thioesterase (yiiD_Cterm) VS_RS00585 PF01293 Phosphoenolpyruvate carboxykinase VS_RS00590 PF01430 Hsp33 protein VS_RS00595 PF01479 S4 domain VS_RS00600 PF11356 Type II secretion system protein C VS_RS00605 PF00263 Bacterial type II and III secretion system protein VS_RS00605 PF03958 Bacterial type II/III secretion system short domain VS_RS00610 PF00437 Type II/IV secretion system protein VS_RS00615 PF00482 Type II secretion system (T2SS), protein F VS_RS00620 PF07963 Prokaryotic N-terminal methylation motif VS_RS00620 PF08334 Type II secretion system (T2SS), protein G VS_RS00625 PF12019 Type II transport protein GspH VS_RS00630 PF07963 Prokaryotic N-terminal methylation motif VS_RS00630 PF02501 Type II secretion system (T2SS), protein I VS_RS00635 PF11612 Type II secretion system (T2SS), protein J VS_RS00635 PF07963 Prokaryotic N-terminal methylation motif VS_RS00640 PF03934 Type II secretion system (T2SS), protein K VS_RS00645 PF05134 Type II secretion system (T2SS), protein L VS_RS00645 PF12693 GspL periplasmic domain VS_RS00650 PF04612 Type II secretion system (T2SS), protein M VS_RS00655 PF01203 Type II secretion system (T2SS), protein N VS_RS00660 PF00459 Inositol monophosphatase family VS_RS00665 PF00293 NUDIX domain VS_RS00670 PF01106 NifU-like domain VS_RS00670 PF01521 Iron-sulphur cluster biosynthesis VS_RS00675 PF00156 Phosphoribosyl transferase domain VS_RS00680 PF00561 alpha/beta hydrolase fold VS_RS00690 PF16921 Tex protein YqgF-like domain VS_RS00690 PF09371 Tex-like protein N-terminal domain VS_RS00690 PF00575 S1 RNA binding domain VS_RS00690 PF17674 HHH domain VS_RS00695 PF01272 Transcription elongation factor, GreA/GreB, C-term VS_RS00695 PF03449 Transcription elongation factor, N-terminal VS_RS00700 PF00486 Transcriptional regulatory protein, C terminal VS_RS00700 PF00072 Response regulator receiver domain VS_RS00705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS00705 PF00672 HAMP domain VS_RS00705 PF00512 His Kinase A (phospho-acceptor) domain VS_RS00710 PF17191 RecG wedge domain VS_RS00710 PF00270 DEAD/DEAH box helicase VS_RS00710 PF00271 Helicase conserved C-terminal domain VS_RS00715 PF02824 TGS domain VS_RS00715 PF04607 Region found in RelA / SpoT proteins VS_RS00715 PF13291 ACT domain VS_RS00720 PF01192 RNA polymerase Rpb6 VS_RS00725 PF00625 Guanylate kinase VS_RS00730 PF00860 Permease family VS_RS00745 PF02378 Phosphotransferase system, EIIC VS_RS00745 PF00367 phosphotransferase system, EIIB VS_RS00750 PF01546 Peptidase family M20/M25/M40 VS_RS00755 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VS_RS00760 PF02779 Transketolase, pyrimidine binding domain VS_RS00760 PF00456 Transketolase, thiamine diphosphate binding domain VS_RS00760 PF02780 Transketolase, C-terminal domain VS_RS00765 PF00923 Transaldolase/Fructose-6-phosphate aldolase VS_RS00770 PF13419 Haloacid dehalogenase-like hydrolase VS_RS00775 PF00465 Iron-containing alcohol dehydrogenase VS_RS00790 PF00455 DeoR C terminal sensor domain VS_RS00790 PF08220 DeoR-like helix-turn-helix domain VS_RS00795 PF00313 'Cold-shock' DNA-binding domain VS_RS00800 PF03755 YicC-like family, N-terminal region VS_RS00800 PF08340 Domain of unknown function (DUF1732) VS_RS00805 PF03725 3' exoribonuclease family, domain 2 VS_RS00805 PF01138 3' exoribonuclease family, domain 1 VS_RS00810 PF00156 Phosphoribosyl transferase domain VS_RS00815 PF03279 Bacterial lipid A biosynthesis acyltransferase VS_RS00820 PF00440 Bacterial regulatory proteins, tetR family VS_RS00825 PF04127 DNA / pantothenate metabolism flavoprotein VS_RS00825 PF02441 Flavoprotein VS_RS00830 PF04002 RadC-like JAB domain VS_RS00835 PF00830 Ribosomal L28 family VS_RS00840 PF00471 Ribosomal protein L33 VS_RS00850 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VS_RS00850 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VS_RS00850 PF06827 Zinc finger found in FPG and IleRS VS_RS00855 PF05686 Glycosyl transferase family 90 VS_RS00860 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VS_RS00865 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VS_RS00890 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VS_RS00895 PF01467 Cytidylyltransferase-like VS_RS00910 PF00132 Bacterial transferase hexapeptide (six repeats) VS_RS00915 PF03279 Bacterial lipid A biosynthesis acyltransferase VS_RS00920 PF01370 NAD dependent epimerase/dehydratase family VS_RS00925 PF08360 QacR-like protein, C-terminal region VS_RS00925 PF00440 Bacterial regulatory proteins, tetR family VS_RS00930 PF01551 Peptidase family M23 VS_RS00935 PF06426 Serine acetyltransferase, N-terminal VS_RS00935 PF00132 Bacterial transferase hexapeptide (six repeats) VS_RS00940 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VS_RS00940 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VS_RS00945 PF02556 Preprotein translocase subunit SecB VS_RS00950 PF00581 Rhodanese-like domain VS_RS00970 PF06082 Exopolysaccharide biosynthesis protein YbjH VS_RS00975 PF02563 Polysaccharide biosynthesis/export protein VS_RS00975 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VS_RS00975 PF10531 SLBB domain VS_RS00980 PF01451 Low molecular weight phosphotyrosine protein phosphatase VS_RS00985 PF13807 G-rich domain on putative tyrosine kinase VS_RS00985 PF13614 AAA domain VS_RS00985 PF02706 Chain length determinant protein VS_RS00990 PF00793 DAHP synthetase I family VS_RS01000 PF02348 Cytidylyltransferase VS_RS01005 PF00571 CBS domain VS_RS01005 PF01380 SIS domain VS_RS01015 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 VS_RS01015 PF00535 Glycosyl transferase family 2 VS_RS01030 PF00132 Bacterial transferase hexapeptide (six repeats) VS_RS01035 PF00534 Glycosyl transferases group 1 VS_RS01040 PF16363 GDP-mannose 4,6 dehydratase VS_RS01045 PF00483 Nucleotidyl transferase VS_RS01050 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VS_RS01055 PF04321 RmlD substrate binding domain VS_RS01060 PF00535 Glycosyl transferase family 2 VS_RS01065 PF01370 NAD dependent epimerase/dehydratase family VS_RS01070 PF02397 Bacterial sugar transferase VS_RS01075 PF02719 Polysaccharide biosynthesis protein VS_RS01080 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VS_RS01080 PF01676 Metalloenzyme superfamily VS_RS01085 PF01554 MatE VS_RS01090 PF02706 Chain length determinant protein VS_RS01095 PF00166 Chaperonin 10 Kd subunit VS_RS01100 PF00118 TCP-1/cpn60 chaperonin family VS_RS01110 PF00990 Diguanylate cyclase, GGDEF domain VS_RS01115 PF02308 MgtC family VS_RS01120 PF04055 Radical SAM superfamily VS_RS01125 PF08207 Elongation factor P (EF-P) KOW-like domain VS_RS01125 PF01132 Elongation factor P (EF-P) OB domain VS_RS01125 PF09285 Elongation factor P, C-terminal VS_RS01130 PF02313 Fumarate reductase subunit D VS_RS01135 PF02300 Fumarate reductase subunit C VS_RS01140 PF13085 2Fe-2S iron-sulfur cluster binding domain VS_RS01140 PF13183 4Fe-4S dicluster domain VS_RS01145 PF02910 Fumarate reductase flavoprotein C-term VS_RS01145 PF00890 FAD binding domain VS_RS01150 PF00152 tRNA synthetases class II (D, K and N) VS_RS01160 PF00672 HAMP domain VS_RS01160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS01165 PF02080 TrkA-C domain VS_RS01165 PF03600 Citrate transporter VS_RS01175 PF02666 Phosphatidylserine decarboxylase VS_RS01180 PF03193 RsgA GTPase VS_RS01185 PF00929 Exonuclease VS_RS01225 PF08331 Domain of unknown function (DUF1730) VS_RS01230 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VS_RS01235 PF01520 N-acetylmuramoyl-L-alanine amidase VS_RS01240 PF01119 DNA mismatch repair protein, C-terminal domain VS_RS01240 PF08676 MutL C terminal dimerisation domain VS_RS01250 PF17209 Hfq protein VS_RS01255 PF16360 GTP-binding GTPase Middle Region VS_RS01255 PF13167 GTP-binding GTPase N-terminal VS_RS01255 PF01926 50S ribosome-binding GTPase VS_RS01260 PF01145 SPFH domain / Band 7 family VS_RS01260 PF12221 Bacterial membrane protein N terminal VS_RS01265 PF01145 SPFH domain / Band 7 family VS_RS01270 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VS_RS01275 PF00709 Adenylosuccinate synthetase VS_RS01280 PF08238 Sel1 repeat VS_RS01285 PF01979 Amidohydrolase family VS_RS01290 PF00575 S1 RNA binding domain VS_RS01290 PF00773 RNB domain VS_RS01290 PF08206 Ribonuclease B OB domain VS_RS01290 PF08461 Ribonuclease R winged-helix domain VS_RS01290 PF17876 Cold shock domain VS_RS01295 PF08032 RNA 2'-O ribose methyltransferase substrate binding VS_RS01295 PF00588 SpoU rRNA Methylase family VS_RS01300 PF01250 Ribosomal protein S6 VS_RS01305 PF01084 Ribosomal protein S18 VS_RS01310 PF03948 Ribosomal protein L9, C-terminal domain VS_RS01310 PF01281 Ribosomal protein L9, N-terminal domain VS_RS01320 PF00772 DnaB-like helicase N terminal domain VS_RS01320 PF03796 DnaB-like helicase C terminal domain VS_RS01325 PF00842 Alanine racemase, C-terminal domain VS_RS01325 PF01168 Alanine racemase, N-terminal domain VS_RS01335 PF01894 Uncharacterised protein family UPF0047 VS_RS01340 PF00342 Phosphoglucose isomerase VS_RS01350 PF01475 Ferric uptake regulator family VS_RS01365 PF00589 Phage integrase family VS_RS01370 PF01207 Dihydrouridine synthase (Dus) VS_RS01375 PF09583 Phage shock protein G (Phageshock_PspG) VS_RS01390 PF00175 Oxidoreductase NAD-binding domain VS_RS01390 PF00667 FAD binding domain VS_RS01390 PF00258 Flavodoxin VS_RS01395 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VS_RS01395 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VS_RS01400 PF01507 Phosphoadenosine phosphosulfate reductase family VS_RS01435 PF00999 Sodium/hydrogen exchanger family VS_RS01440 PF02574 Homocysteine S-methyltransferase VS_RS01440 PF00809 Pterin binding enzyme VS_RS01440 PF02965 Vitamin B12 dependent methionine synthase, activation domain VS_RS01440 PF02607 B12 binding domain VS_RS01440 PF02310 B12 binding domain VS_RS01445 PF00696 Amino acid kinase family VS_RS01445 PF01842 ACT domain VS_RS01450 PF00266 Aminotransferase class-V VS_RS01460 PF00005 ABC transporter VS_RS01460 PF17760 UvrA interaction domain VS_RS01460 PF17755 UvrA DNA-binding domain VS_RS01465 PF00483 Nucleotidyl transferase VS_RS01470 PF00196 Bacterial regulatory proteins, luxR family VS_RS01475 PF00436 Single-strand binding protein family VS_RS01480 PF00563 EAL domain VS_RS01480 PF17157 Gammaproteobacterial periplasmic sensor domain VS_RS01480 PF00990 Diguanylate cyclase, GGDEF domain VS_RS01500 PF03958 Bacterial type II/III secretion system short domain VS_RS01500 PF00263 Bacterial type II and III secretion system protein VS_RS01505 PF01471 Putative peptidoglycan binding domain VS_RS01505 PF13401 AAA domain VS_RS01515 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VS_RS01515 PF00437 Type II/IV secretion system protein VS_RS01520 PF00482 Type II secretion system (T2SS), protein F VS_RS01530 PF07963 Prokaryotic N-terminal methylation motif VS_RS01535 PF07963 Prokaryotic N-terminal methylation motif VS_RS01570 PF04085 rod shape-determining protein MreC VS_RS01575 PF04093 rod shape-determining protein MreD VS_RS01580 PF02545 Maf-like protein VS_RS01585 PF10150 Ribonuclease E/G family VS_RS01585 PF00575 S1 RNA binding domain VS_RS01590 PF13502 AsmA-like C-terminal region VS_RS01590 PF13116 Protein of unknown function VS_RS01595 PF00795 Carbon-nitrogen hydrolase VS_RS01600 PF01523 Putative modulator of DNA gyrase VS_RS01605 PF13638 PIN domain VS_RS01605 PF02562 PhoH-like protein VS_RS01610 PF00176 SNF2 family N-terminal domain VS_RS01610 PF00271 Helicase conserved C-terminal domain VS_RS01610 PF12137 RNA polymerase recycling family C-terminal VS_RS01610 PF18337 RapA N-terminal Tudor like domain VS_RS01610 PF18339 RapA N-terminal Tudor like domain 1 VS_RS01615 PF00849 RNA pseudouridylate synthase VS_RS01620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_RS01620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_RS01625 PF00582 Universal stress protein family VS_RS01640 PF02863 Arginine repressor, C-terminal domain VS_RS01640 PF01316 Arginine repressor, DNA binding domain VS_RS01645 PF00056 lactate/malate dehydrogenase, NAD binding domain VS_RS01645 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VS_RS01655 PF00348 Polyprenyl synthetase VS_RS01660 PF00829 Ribosomal prokaryotic L21 protein VS_RS01665 PF01016 Ribosomal L27 protein VS_RS01670 PF01926 50S ribosome-binding GTPase VS_RS01670 PF01018 GTP1/OBG VS_RS01680 PF12821 Threonine/Serine exporter, ThrE VS_RS01685 PF00186 Dihydrofolate reductase VS_RS01690 PF00149 Calcineurin-like phosphoesterase VS_RS01695 PF04379 ApaG domain VS_RS01700 PF00398 Ribosomal RNA adenine dimethylase VS_RS01705 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VS_RS01710 PF09312 SurA N-terminal domain VS_RS01710 PF00639 PPIC-type PPIASE domain VS_RS01715 PF04453 LPS transport system D VS_RS01715 PF03968 OstA-like protein VS_RS01720 PF05099 Tellurite resistance protein TerB VS_RS01720 PF00226 DnaJ domain VS_RS01735 PF00694 Aconitase C-terminal domain VS_RS01740 PF00330 Aconitase family (aconitate hydratase) VS_RS01745 PF00180 Isocitrate/isopropylmalate dehydrogenase VS_RS01750 PF08502 LeuA allosteric (dimerisation) domain VS_RS01750 PF00682 HMGL-like VS_RS01765 PF00873 AcrB/AcrD/AcrF family VS_RS01770 PF01569 PAP2 superfamily VS_RS01780 PF03466 LysR substrate binding domain VS_RS01780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS01785 PF00501 AMP-binding enzyme VS_RS01790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VS_RS01790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VS_RS01790 PF00205 Thiamine pyrophosphate enzyme, central domain VS_RS01795 PF10369 Small subunit of acetolactate synthase VS_RS01815 PF00224 Pyruvate kinase, barrel domain VS_RS01815 PF02887 Pyruvate kinase, alpha/beta domain VS_RS01820 PF00455 DeoR C terminal sensor domain VS_RS01820 PF08220 DeoR-like helix-turn-helix domain VS_RS01825 PF01380 SIS domain VS_RS01830 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_RS01840 PF04546 Sigma-70, non-essential region VS_RS01840 PF03979 Sigma-70 factor, region 1.1 VS_RS01840 PF00140 Sigma-70 factor, region 1.2 VS_RS01840 PF04542 Sigma-70 region 2 VS_RS01840 PF04545 Sigma-70, region 4 VS_RS01840 PF04539 Sigma-70 region 3 VS_RS01845 PF10410 DnaB-helicase binding domain of primase VS_RS01845 PF08278 DNA primase DnaG DnaB-binding VS_RS01845 PF08275 DNA primase catalytic core, N-terminal domain VS_RS01845 PF01807 CHC2 zinc finger VS_RS01850 PF09424 Yqey-like protein VS_RS01855 PF01165 Ribosomal protein S21 VS_RS01860 PF00814 Glycoprotease family VS_RS01865 PF12697 Alpha/beta hydrolase family VS_RS01870 PF02660 Glycerol-3-phosphate acyltransferase VS_RS01875 PF02152 Dihydroneopterin aldolase VS_RS01880 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VS_RS01885 PF02673 Bacitracin resistance protein BacA VS_RS01890 PF12627 Probable RNA and SrmB- binding site of polymerase A VS_RS01890 PF01743 Poly A polymerase head domain VS_RS01890 PF01966 HD domain VS_RS01895 PF13401 AAA domain VS_RS01895 PF01471 Putative peptidoglycan binding domain VS_RS01905 PF08239 Bacterial SH3 domain VS_RS01910 PF01384 Phosphate transporter family VS_RS01915 PF01865 Protein of unknown function DUF47 VS_RS01920 PF01928 CYTH domain VS_RS01925 PF07885 Ion channel VS_RS01930 PF02743 Cache domain VS_RS01930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS01930 PF00672 HAMP domain VS_RS01935 PF03710 Glutamate-ammonia ligase adenylyltransferase VS_RS01935 PF08335 GlnD PII-uridylyltransferase VS_RS01940 PF01467 Cytidylyltransferase-like VS_RS01940 PF00294 pfkB family carbohydrate kinase VS_RS01945 PF02321 Outer membrane efflux protein VS_RS01950 PF00293 NUDIX domain VS_RS01955 PF06853 Protein of unknown function (DUF1249) VS_RS01960 PF00149 Calcineurin-like phosphoesterase VS_RS01965 PF05728 Uncharacterised protein family (UPF0227) VS_RS01970 PF01751 Toprim domain VS_RS01970 PF00204 DNA gyrase B VS_RS01970 PF00986 DNA gyrase B subunit, carboxyl terminus VS_RS01970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS01975 PF03989 DNA gyrase C-terminal domain, beta-propeller VS_RS01975 PF00521 DNA gyrase/topoisomerase IV, subunit A VS_RS01980 PF13180 PDZ domain VS_RS01985 PF00595 PDZ domain VS_RS01990 PF06295 Protein of unknown function (DUF1043) VS_RS01995 PF03969 AFG1-like ATPase VS_RS02000 PF00572 Ribosomal protein L13 VS_RS02005 PF00380 Ribosomal protein S9/S16 VS_RS02010 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VS_RS02010 PF00355 Rieske [2Fe-2S] domain VS_RS02015 PF00032 Cytochrome b(C-terminal)/b6/petD VS_RS02015 PF00033 Cytochrome b/b6/petB VS_RS02020 PF02167 Cytochrome C1 family VS_RS02025 PF00043 Glutathione S-transferase, C-terminal domain VS_RS02025 PF02798 Glutathione S-transferase, N-terminal domain VS_RS02030 PF04386 Stringent starvation protein B VS_RS02035 PF04972 BON domain VS_RS02040 PF13580 SIS domain VS_RS02045 PF02021 Uncharacterised protein family UPF0102 VS_RS02050 PF04348 LppC putative lipoprotein VS_RS02055 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_RS02060 PF01795 MraW methylase family VS_RS02065 PF04999 Cell division protein FtsL VS_RS02070 PF00905 Penicillin binding protein transpeptidase domain VS_RS02070 PF03717 Penicillin-binding Protein dimerisation domain VS_RS02075 PF02875 Mur ligase family, glutamate ligase domain VS_RS02075 PF01225 Mur ligase family, catalytic domain VS_RS02075 PF08245 Mur ligase middle domain VS_RS02080 PF02875 Mur ligase family, glutamate ligase domain VS_RS02080 PF08245 Mur ligase middle domain VS_RS02080 PF01225 Mur ligase family, catalytic domain VS_RS02085 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VS_RS02085 PF00953 Glycosyl transferase family 4 VS_RS02090 PF02875 Mur ligase family, glutamate ligase domain VS_RS02090 PF08245 Mur ligase middle domain VS_RS02095 PF01098 Cell cycle protein VS_RS02100 PF03033 Glycosyltransferase family 28 N-terminal domain VS_RS02100 PF04101 Glycosyltransferase family 28 C-terminal domain VS_RS02105 PF02875 Mur ligase family, glutamate ligase domain VS_RS02105 PF08245 Mur ligase middle domain VS_RS02105 PF01225 Mur ligase family, catalytic domain VS_RS02120 PF02491 SHS2 domain inserted in FTSA VS_RS02125 PF12327 FtsZ family, C-terminal domain VS_RS02125 PF00091 Tubulin/FtsZ family, GTPase domain VS_RS02130 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VS_RS02135 PF07517 SecA DEAD-like domain VS_RS02135 PF01043 SecA preprotein cross-linking domain VS_RS02135 PF02810 SEC-C motif VS_RS02135 PF07516 SecA Wing and Scaffold domain VS_RS02145 PF13276 HTH-like domain VS_RS02145 PF00665 Integrase core domain VS_RS02145 PF13333 Integrase core domain VS_RS02150 PF00293 NUDIX domain VS_RS02155 PF05173 Dihydrodipicolinate reductase, C-terminus VS_RS02155 PF01113 Dihydrodipicolinate reductase, N-terminus VS_RS02160 PF00117 Glutamine amidotransferase class-I VS_RS02160 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VS_RS02165 PF02142 MGS-like domain VS_RS02165 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VS_RS02165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VS_RS02170 PF01925 Sulfite exporter TauE/SafE VS_RS02175 PF03466 LysR substrate binding domain VS_RS02175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS02180 PF03458 UPF0126 domain VS_RS02185 PF01497 Periplasmic binding protein VS_RS02195 PF01048 Phosphorylase superfamily VS_RS02205 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VS_RS02205 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_RS02215 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_RS02215 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VS_RS02220 PF01493 GXGXG motif VS_RS02220 PF00310 Glutamine amidotransferases class-II VS_RS02220 PF04898 Glutamate synthase central domain VS_RS02220 PF01645 Conserved region in glutamate synthase VS_RS02225 PF16199 Radical_SAM C-terminal domain VS_RS02225 PF04055 Radical SAM superfamily VS_RS02230 PF00990 Diguanylate cyclase, GGDEF domain VS_RS02230 PF01590 GAF domain VS_RS02230 PF00563 EAL domain VS_RS02230 PF00360 Phytochrome region VS_RS02235 PF18415 Histidine kinase receptor ArcB trans-membrane domain VS_RS02235 PF01627 Hpt domain VS_RS02235 PF00989 PAS fold VS_RS02235 PF00072 Response regulator receiver domain VS_RS02235 PF00512 His Kinase A (phospho-acceptor) domain VS_RS02235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS02245 PF00486 Transcriptional regulatory protein, C terminal VS_RS02245 PF00072 Response regulator receiver domain VS_RS02250 PF03737 Aldolase/RraA VS_RS02260 PF00742 Homoserine dehydrogenase VS_RS02260 PF03447 Homoserine dehydrogenase, NAD binding domain VS_RS02260 PF13840 ACT domain VS_RS02260 PF01842 ACT domain VS_RS02260 PF00696 Amino acid kinase family VS_RS02265 PF00288 GHMP kinases N terminal domain VS_RS02265 PF08544 GHMP kinases C terminal VS_RS02270 PF00291 Pyridoxal-phosphate dependent enzyme VS_RS02270 PF14821 Threonine synthase N terminus VS_RS02285 PF01757 Acyltransferase family VS_RS02295 PF00665 Integrase core domain VS_RS02295 PF13333 Integrase core domain VS_RS02295 PF13276 HTH-like domain VS_RS02300 PF01228 Glycine radical VS_RS02305 PF01261 Xylose isomerase-like TIM barrel VS_RS02310 PF03167 Uracil DNA glycosylase superfamily VS_RS02325 PF01235 Sodium:alanine symporter family VS_RS02330 PF03883 Peroxide stress protein YaaA VS_RS02335 PF00270 DEAD/DEAH box helicase VS_RS02335 PF00271 Helicase conserved C-terminal domain VS_RS02340 PF05175 Methyltransferase small domain VS_RS02345 PF05525 Branched-chain amino acid transport protein VS_RS02355 PF00258 Flavodoxin VS_RS02360 PF02899 Phage integrase, N-terminal SAM-like domain VS_RS02360 PF00589 Phage integrase family VS_RS02365 PF13098 Thioredoxin-like domain VS_RS02365 PF10411 Disulfide bond isomerase protein N-terminus VS_RS02370 PF17768 RecJ OB domain VS_RS02370 PF02272 DHHA1 domain VS_RS02370 PF01368 DHH family VS_RS02375 PF00472 RF-1 domain VS_RS02375 PF03462 PCRF domain VS_RS02380 PF00152 tRNA synthetases class II (D, K and N) VS_RS02380 PF01336 OB-fold nucleic acid binding domain VS_RS02385 PF06505 Activator of aromatic catabolism VS_RS02385 PF02830 V4R domain VS_RS02385 PF02954 Bacterial regulatory protein, Fis family VS_RS02385 PF00158 Sigma-54 interaction domain VS_RS02400 PF02976 DNA mismatch repair enzyme MutH VS_RS02405 PF00293 NUDIX domain VS_RS02410 PF01590 GAF domain VS_RS02410 PF05524 PEP-utilising enzyme, N-terminal VS_RS02410 PF00391 PEP-utilising enzyme, mobile domain VS_RS02410 PF02896 PEP-utilising enzyme, TIM barrel domain VS_RS02415 PF01925 Sulfite exporter TauE/SafE VS_RS02420 PF01790 Prolipoprotein diacylglyceryl transferase VS_RS02425 PF00303 Thymidylate synthase VS_RS02430 PF00072 Response regulator receiver domain VS_RS02430 PF00486 Transcriptional regulatory protein, C terminal VS_RS02440 PF02690 Na+/Pi-cotransporter VS_RS02445 PF03466 LysR substrate binding domain VS_RS02445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS02450 PF01022 Bacterial regulatory protein, arsR family VS_RS02455 PF01649 Ribosomal protein S20 VS_RS02460 PF03023 Lipid II flippase MurJ VS_RS02465 PF06574 FAD synthetase VS_RS02465 PF01687 Riboflavin kinase VS_RS02470 PF00133 tRNA synthetases class I (I, L, M and V) VS_RS02470 PF08264 Anticodon-binding domain of tRNA VS_RS02470 PF06827 Zinc finger found in FPG and IleRS VS_RS02475 PF01252 Signal peptidase (SPase) II VS_RS02480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_RS02485 PF02401 LytB protein VS_RS02490 PF04397 LytTr DNA-binding domain VS_RS02490 PF00072 Response regulator receiver domain VS_RS02495 PF07694 5TMR of 5TMR-LYT VS_RS02495 PF06580 Histidine kinase VS_RS02500 PF02554 Carbon starvation protein CstA VS_RS02510 PF13580 SIS domain VS_RS02515 PF03702 Anhydro-N-acetylmuramic acid kinase VS_RS02520 PF00933 Glycosyl hydrolase family 3 N terminal domain VS_RS02525 PF00793 DAHP synthetase I family VS_RS02530 PF02153 Prephenate dehydrogenase VS_RS02530 PF01817 Chorismate mutase type II VS_RS02535 PF04225 Opacity-associated protein A LysM-like domain VS_RS02535 PF01551 Peptidase family M23 VS_RS02540 PF07238 PilZ domain VS_RS02545 PF12848 ABC transporter VS_RS02545 PF00005 ABC transporter VS_RS02550 PF14718 Soluble lytic murein transglycosylase L domain VS_RS02550 PF01464 Transglycosylase SLT domain VS_RS02555 PF01371 Trp repressor protein VS_RS02560 PF01931 Protein of unknown function DUF84 VS_RS02565 PF00563 EAL domain VS_RS02565 PF00990 Diguanylate cyclase, GGDEF domain VS_RS02570 PF00800 Prephenate dehydratase VS_RS02570 PF01817 Chorismate mutase type II VS_RS02575 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VS_RS02580 PF01464 Transglycosylase SLT domain VS_RS02585 PF13525 Outer membrane lipoprotein VS_RS02590 PF01479 S4 domain VS_RS02590 PF00849 RNA pseudouridylate synthase VS_RS02595 PF02578 Multi-copper polyphenol oxidoreductase laccase VS_RS02600 PF17871 AAA lid domain VS_RS02600 PF02861 Clp amino terminal domain, pathogenicity island component VS_RS02600 PF10431 C-terminal, D2-small domain, of ClpB protein VS_RS02600 PF00004 ATPase family associated with various cellular activities (AAA) VS_RS02600 PF07724 AAA domain (Cdc48 subfamily) VS_RS02630 PF03411 Penicillin-insensitive murein endopeptidase VS_RS02640 PF12838 4Fe-4S dicluster domain VS_RS02645 PF16325 Peptidase family U32 C-terminal domain VS_RS02645 PF01136 Peptidase family U32 VS_RS02650 PF04381 Putative exonuclease, RdgC VS_RS02655 PF00486 Transcriptional regulatory protein, C terminal VS_RS02655 PF00072 Response regulator receiver domain VS_RS02660 PF00989 PAS fold VS_RS02660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS02660 PF11808 Phosphate regulon sensor protein PhoR VS_RS02660 PF00512 His Kinase A (phospho-acceptor) domain VS_RS02665 PF12849 PBP superfamily domain VS_RS02670 PF02541 Ppx/GppA phosphatase family VS_RS02675 PF13089 Polyphosphate kinase N-terminal domain VS_RS02675 PF17941 Polyphosphate kinase C-terminal domain 1 VS_RS02675 PF13090 Polyphosphate kinase C-terminal domain 2 VS_RS02675 PF02503 Polyphosphate kinase middle domain VS_RS02680 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS02685 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS02690 PF00005 ABC transporter VS_RS02695 PF01895 PhoU domain VS_RS02710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS02710 PF03466 LysR substrate binding domain VS_RS02715 PF03932 CutC family VS_RS02720 PF00578 AhpC/TSA family VS_RS02720 PF10417 C-terminal domain of 1-Cys peroxiredoxin VS_RS02725 PF03466 LysR substrate binding domain VS_RS02725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS02735 PF00571 CBS domain VS_RS02740 PF02547 Queuosine biosynthesis protein VS_RS02745 PF01702 Queuine tRNA-ribosyltransferase VS_RS02750 PF02699 Preprotein translocase subunit VS_RS02755 PF02355 Protein export membrane protein VS_RS02755 PF13721 SecD export protein N-terminal TM region VS_RS02755 PF07549 SecD/SecF GG Motif VS_RS02760 PF07549 SecD/SecF GG Motif VS_RS02760 PF02355 Protein export membrane protein VS_RS02765 PF00459 Inositol monophosphatase family VS_RS02770 PF00588 SpoU rRNA Methylase family VS_RS02775 PF02082 Transcriptional regulator VS_RS02780 PF00266 Aminotransferase class-V VS_RS02785 PF01592 NifU-like N terminal domain VS_RS02790 PF01521 Iron-sulphur cluster biosynthesis VS_RS02795 PF00226 DnaJ domain VS_RS02795 PF07743 HSCB C-terminal oligomerisation domain VS_RS02800 PF00012 Hsp70 protein VS_RS02805 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_RS02810 PF04384 Iron-sulphur cluster assembly VS_RS02815 PF00883 Cytosol aminopeptidase family, catalytic domain VS_RS02815 PF12404 Peptidase VS_RS02820 PF00334 Nucleoside diphosphate kinase VS_RS02825 PF04055 Radical SAM superfamily VS_RS02830 PF13464 Domain of unknown function (DUF4115) VS_RS02835 PF04551 GcpE protein VS_RS02840 PF03129 Anticodon binding domain VS_RS02840 PF13393 Histidyl-tRNA synthetase VS_RS02845 PF09976 Tetratricopeptide repeat-like domain VS_RS02850 PF13360 PQQ-like domain VS_RS02855 PF01926 50S ribosome-binding GTPase VS_RS02855 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VS_RS02860 PF01411 tRNA synthetases class II (A) VS_RS02860 PF02272 DHHA1 domain VS_RS02860 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VS_RS02865 PF08448 PAS fold VS_RS02865 PF00990 Diguanylate cyclase, GGDEF domain VS_RS02875 PF13742 OB-fold nucleic acid binding domain VS_RS02875 PF02601 Exonuclease VII, large subunit VS_RS02880 PF00478 IMP dehydrogenase / GMP reductase domain VS_RS02880 PF00571 CBS domain VS_RS02885 PF00958 GMP synthase C terminal domain VS_RS02885 PF00117 Glutamine amidotransferase class-I VS_RS02885 PF02540 NAD synthase VS_RS02890 PF00704 Glycosyl hydrolases family 18 VS_RS02890 PF06483 Chitinase C VS_RS02900 PF01184 GPR1/FUN34/yaaH family VS_RS02905 PF01235 Sodium:alanine symporter family VS_RS02910 PF00753 Metallo-beta-lactamase superfamily VS_RS02910 PF10996 Beta-Casp domain VS_RS02910 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VS_RS02915 PF01553 Acyltransferase VS_RS02940 PF18030 RimK PreATP-grasp domain VS_RS02940 PF08443 RimK-like ATP-grasp domain VS_RS02945 PF01668 SmpB protein VS_RS02950 PF03364 Polyketide cyclase / dehydrase and lipid transport VS_RS02955 PF03658 RnfH family Ubiquitin VS_RS02960 PF04355 SmpA / OmlA family VS_RS02965 PF02463 RecF/RecN/SMC N terminal domain VS_RS02970 PF01513 ATP-NAD kinase VS_RS02975 PF01025 GrpE VS_RS02980 PF00375 Sodium:dicarboxylate symporter family VS_RS02985 PF00012 Hsp70 protein VS_RS02990 PF00226 DnaJ domain VS_RS02990 PF00684 DnaJ central domain VS_RS02990 PF01556 DnaJ C terminal domain VS_RS02995 PF07963 Prokaryotic N-terminal methylation motif VS_RS02995 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor VS_RS03020 PF03806 AbgT putative transporter family VS_RS03025 PF00571 CBS domain VS_RS03025 PF03471 Transporter associated domain VS_RS03025 PF01595 Cyclin M transmembrane N-terminal domain VS_RS03030 PF14437 MafB19-like deaminase VS_RS03035 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_RS03035 PF01464 Transglycosylase SLT domain VS_RS03045 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VS_RS03045 PF02769 AIR synthase related protein, C-terminal domain VS_RS03045 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VS_RS03055 PF14602 Hexapeptide repeat of succinyl-transferase VS_RS03055 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VS_RS03060 PF01914 MarC family integral membrane protein VS_RS03075 PF07130 YebG protein VS_RS03080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS03080 PF03466 LysR substrate binding domain VS_RS03090 PF17946 RecC C-terminal domain VS_RS03095 PF12705 PD-(D/E)XK nuclease superfamily VS_RS03095 PF13361 UvrD-like helicase C-terminal domain VS_RS03095 PF00580 UvrD/REP helicase N-terminal domain VS_RS03100 PF13538 UvrD-like helicase C-terminal domain VS_RS03105 PF00583 Acetyltransferase (GNAT) family VS_RS03105 PF00696 Amino acid kinase family VS_RS03115 PF03562 MltA specific insert domain VS_RS03115 PF06725 3D domain VS_RS03120 PF00899 ThiF family VS_RS03125 PF02657 Fe-S metabolism associated domain VS_RS03130 PF00266 Aminotransferase class-V VS_RS03135 PF02558 Ketopantoate reductase PanE/ApbA VS_RS03135 PF08546 Ketopantoate reductase PanE/ApbA C terminal VS_RS03140 PF03502 Nucleoside-specific channel-forming protein, Tsx VS_RS03150 PF07690 Major Facilitator Superfamily VS_RS03155 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VS_RS03165 PF05175 Methyltransferase small domain VS_RS03170 PF01722 BolA-like protein VS_RS03175 PF11973 NQRA C-terminal domain VS_RS03175 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VS_RS03180 PF03116 NQR2, RnfD, RnfE family VS_RS03185 PF04205 FMN-binding domain VS_RS03190 PF02508 Rnf-Nqr subunit, membrane protein VS_RS03195 PF02508 Rnf-Nqr subunit, membrane protein VS_RS03200 PF00970 Oxidoreductase FAD-binding domain VS_RS03200 PF00175 Oxidoreductase NAD-binding domain VS_RS03200 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_RS03205 PF02424 ApbE family VS_RS03210 PF04400 (Na+)-NQR maturation NqrM VS_RS03215 PF00072 Response regulator receiver domain VS_RS03215 PF00990 Diguanylate cyclase, GGDEF domain VS_RS03220 PF11799 impB/mucB/samB family C-terminal domain VS_RS03220 PF00817 impB/mucB/samB family VS_RS03220 PF11798 IMS family HHH motif VS_RS03225 PF16124 RecQ zinc-binding VS_RS03225 PF00570 HRDC domain VS_RS03225 PF09382 RQC domain VS_RS03225 PF00270 DEAD/DEAH box helicase VS_RS03225 PF00271 Helicase conserved C-terminal domain VS_RS03230 PF03449 Transcription elongation factor, N-terminal VS_RS03230 PF01272 Transcription elongation factor, GreA/GreB, C-term VS_RS03240 PF00209 Sodium:neurotransmitter symporter family VS_RS03245 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VS_RS03245 PF04055 Radical SAM superfamily VS_RS03250 PF03099 Biotin/lipoate A/B protein ligase family VS_RS03255 PF04359 Protein of unknown function (DUF493) VS_RS03260 PF00768 D-alanyl-D-alanine carboxypeptidase VS_RS03260 PF07943 Penicillin-binding protein 5, C-terminal domain VS_RS03265 PF03330 Lytic transglycolase VS_RS03265 PF05036 Sporulation related domain VS_RS03270 PF01098 Cell cycle protein VS_RS03275 PF00905 Penicillin binding protein transpeptidase domain VS_RS03275 PF03717 Penicillin-binding Protein dimerisation domain VS_RS03280 PF02590 Predicted SPOUT methyltransferase VS_RS03290 PF06144 DNA polymerase III, delta subunit VS_RS03290 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VS_RS03295 PF04390 Lipopolysaccharide-assembly VS_RS03300 PF13603 Leucyl-tRNA synthetase, Domain 2 VS_RS03300 PF00133 tRNA synthetases class I (I, L, M and V) VS_RS03300 PF08264 Anticodon-binding domain of tRNA VS_RS03305 PF07295 Zinc-ribbon containing domain VS_RS03310 PF00795 Carbon-nitrogen hydrolase VS_RS03315 PF00571 CBS domain VS_RS03315 PF03471 Transporter associated domain VS_RS03320 PF02130 Uncharacterized protein family UPF0054 VS_RS03325 PF02562 PhoH-like protein VS_RS03330 PF00919 Uncharacterized protein family UPF0004 VS_RS03330 PF04055 Radical SAM superfamily VS_RS03330 PF01938 TRAM domain VS_RS03335 PF01494 FAD binding domain VS_RS03340 PF10282 Lactonase, 7-bladed beta-propeller VS_RS03430 PF06071 Protein of unknown function (DUF933) VS_RS03430 PF01926 50S ribosome-binding GTPase VS_RS03435 PF01195 Peptidyl-tRNA hydrolase VS_RS03440 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VS_RS03440 PF14572 Phosphoribosyl synthetase-associated domain VS_RS03445 PF00288 GHMP kinases N terminal domain VS_RS03445 PF08544 GHMP kinases C terminal VS_RS03450 PF03550 Outer membrane lipoprotein LolB VS_RS03455 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VS_RS03455 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VS_RS03455 PF01488 Shikimate / quinate 5-dehydrogenase VS_RS03460 PF00472 RF-1 domain VS_RS03460 PF03462 PCRF domain VS_RS03465 PF17827 PrmC N-terminal domain VS_RS03465 PF13847 Methyltransferase domain VS_RS03470 PF04247 Invasion gene expression up-regulator, SirB VS_RS03475 PF13369 Transglutaminase-like superfamily VS_RS03480 PF00793 DAHP synthetase I family VS_RS03485 PF00149 Calcineurin-like phosphoesterase VS_RS03485 PF02872 5'-nucleotidase, C-terminal domain VS_RS03490 PF04073 Aminoacyl-tRNA editing domain VS_RS03495 PF00849 RNA pseudouridylate synthase VS_RS03495 PF01479 S4 domain VS_RS03500 PF01713 Smr domain VS_RS03525 PF03173 Putative carbohydrate binding domain VS_RS03525 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VS_RS03525 PF00728 Glycosyl hydrolase family 20, catalytic domain VS_RS03525 PF02838 Glycosyl hydrolase family 20, domain 2 VS_RS03540 PF00403 Heavy-metal-associated domain VS_RS03545 PF00749 tRNA synthetases class I (E and Q), catalytic domain VS_RS03550 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_RS03550 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_RS03565 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_RS03565 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_RS03590 PF00221 Aromatic amino acid lyase VS_RS03595 PF00535 Glycosyl transferase family 2 VS_RS03605 PF13193 AMP-binding enzyme C-terminal domain VS_RS03605 PF00501 AMP-binding enzyme VS_RS03615 PF00550 Phosphopantetheine attachment site VS_RS03620 PF00550 Phosphopantetheine attachment site VS_RS03645 PF04820 Tryptophan halogenase VS_RS03680 PF13144 Chaperone for flagella basal body P-ring formation VS_RS03685 PF00072 Response regulator receiver domain VS_RS03685 PF01584 CheW-like domain VS_RS03690 PF01739 CheR methyltransferase, SAM binding domain VS_RS03690 PF03705 CheR methyltransferase, all-alpha domain VS_RS03695 PF00460 Flagella basal body rod protein VS_RS03700 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_RS03700 PF00460 Flagella basal body rod protein VS_RS03705 PF03963 Flagellar hook capping protein - N-terminal region VS_RS03705 PF13861 FlgD Tudor-like domain VS_RS03705 PF13860 FlgD Ig-like domain VS_RS03710 PF07559 Flagellar basal body protein FlaE VS_RS03710 PF00460 Flagella basal body rod protein VS_RS03710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_RS03715 PF00460 Flagella basal body rod protein VS_RS03715 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_RS03720 PF00460 Flagella basal body rod protein VS_RS03720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_RS03725 PF02107 Flagellar L-ring protein VS_RS03730 PF02119 Flagellar P-ring protein VS_RS03735 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VS_RS03735 PF10135 Rod binding protein VS_RS03740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VS_RS03740 PF07196 Flagellin hook IN motif VS_RS03750 PF07196 Flagellin hook IN motif VS_RS03750 PF00669 Bacterial flagellin N-terminal helical region VS_RS03750 PF00700 Bacterial flagellin C-terminal helical region VS_RS03755 PF00700 Bacterial flagellin C-terminal helical region VS_RS03755 PF07196 Flagellin hook IN motif VS_RS03755 PF00669 Bacterial flagellin N-terminal helical region VS_RS03760 PF07196 Flagellin hook IN motif VS_RS03760 PF00700 Bacterial flagellin C-terminal helical region VS_RS03760 PF00669 Bacterial flagellin N-terminal helical region VS_RS03765 PF03646 FlaG protein VS_RS03770 PF07196 Flagellin hook IN motif VS_RS03770 PF07195 Flagellar hook-associated protein 2 C-terminus VS_RS03770 PF02465 Flagellar hook-associated protein 2 N-terminus VS_RS03780 PF02561 Flagellar protein FliS VS_RS03785 PF02954 Bacterial regulatory protein, Fis family VS_RS03785 PF00158 Sigma-54 interaction domain VS_RS03785 PF06490 Flagellar regulatory protein FleQ VS_RS03790 PF00512 His Kinase A (phospho-acceptor) domain VS_RS03790 PF13188 PAS domain VS_RS03790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS03795 PF02954 Bacterial regulatory protein, Fis family VS_RS03795 PF00158 Sigma-54 interaction domain VS_RS03795 PF00072 Response regulator receiver domain VS_RS03800 PF02049 Flagellar hook-basal body complex protein FliE VS_RS03805 PF08345 Flagellar M-ring protein C-terminal VS_RS03805 PF01514 Secretory protein of YscJ/FliF family VS_RS03810 PF01706 FliG C-terminal domain VS_RS03810 PF14842 FliG N-terminal domain VS_RS03810 PF14841 FliG middle domain VS_RS03820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_RS03820 PF18269 T3SS EscN ATPase C-terminal domain VS_RS03840 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VS_RS03840 PF02154 Flagellar motor switch protein FliM VS_RS03845 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VS_RS03850 PF04347 Flagellar biosynthesis protein, FliO VS_RS03855 PF00813 FliP family VS_RS03860 PF01313 Bacterial export proteins, family 3 VS_RS03865 PF01311 Bacterial export proteins, family 1 VS_RS03870 PF01312 FlhB HrpN YscU SpaS Family VS_RS03875 PF00771 FHIPEP family VS_RS03880 PF00448 SRP54-type protein, GTPase domain VS_RS03885 PF10609 NUBPL iron-transfer P-loop NTPase VS_RS03890 PF04542 Sigma-70 region 2 VS_RS03890 PF04545 Sigma-70, region 4 VS_RS03890 PF04539 Sigma-70 region 3 VS_RS03895 PF00072 Response regulator receiver domain VS_RS03905 PF01584 CheW-like domain VS_RS03905 PF02895 Signal transducing histidine kinase, homodimeric domain VS_RS03905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS03905 PF01627 Hpt domain VS_RS03905 PF00072 Response regulator receiver domain VS_RS03910 PF00072 Response regulator receiver domain VS_RS03910 PF01339 CheB methylesterase VS_RS03915 PF13614 AAA domain VS_RS03925 PF01584 CheW-like domain VS_RS03935 PF00005 ABC transporter VS_RS03940 PF03379 CcmB protein VS_RS03945 PF01578 Cytochrome C assembly protein VS_RS03950 PF04995 Heme exporter protein D (CcmD) VS_RS03955 PF03100 CcmE VS_RS03960 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VS_RS03960 PF01578 Cytochrome C assembly protein VS_RS03965 PF08534 Redoxin VS_RS03970 PF03918 Cytochrome C biogenesis protein VS_RS03975 PF03918 Cytochrome C biogenesis protein VS_RS03980 PF04333 MlaA lipoprotein VS_RS03985 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VS_RS03990 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VS_RS04000 PF08281 Sigma-70, region 4 VS_RS04000 PF04542 Sigma-70 region 2 VS_RS04005 PF02803 Thiolase, C-terminal domain VS_RS04005 PF00108 Thiolase, N-terminal domain VS_RS04010 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VS_RS04010 PF00378 Enoyl-CoA hydratase/isomerase VS_RS04010 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VS_RS04015 PF00675 Insulinase (Peptidase family M16) VS_RS04015 PF05193 Peptidase M16 inactive domain VS_RS04015 PF16187 Middle or third domain of peptidase_M16 VS_RS04020 PF00300 Histidine phosphatase superfamily (branch 1) VS_RS04025 PF01713 Smr domain VS_RS04030 PF05175 Methyltransferase small domain VS_RS04035 PF01810 LysE type translocator VS_RS04040 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VS_RS04045 PF00072 Response regulator receiver domain VS_RS04045 PF00486 Transcriptional regulatory protein, C terminal VS_RS04050 PF00672 HAMP domain VS_RS04050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS04050 PF00512 His Kinase A (phospho-acceptor) domain VS_RS04055 PF01547 Bacterial extracellular solute-binding protein VS_RS04060 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS04065 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS04070 PF03459 TOBE domain VS_RS04070 PF17912 MalK OB fold domain VS_RS04070 PF00005 ABC transporter VS_RS04075 PF05922 Peptidase inhibitor I9 VS_RS04075 PF00082 Subtilase family VS_RS04080 PF01926 50S ribosome-binding GTPase VS_RS04080 PF13167 GTP-binding GTPase N-terminal VS_RS04080 PF16360 GTP-binding GTPase Middle Region VS_RS04085 PF03776 Septum formation topological specificity factor MinE VS_RS04090 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VS_RS04095 PF03775 Septum formation inhibitor MinC, C-terminal domain VS_RS04095 PF05209 Septum formation inhibitor MinC, N-terminal domain VS_RS04100 PF05166 YcgL domain VS_RS04105 PF13406 Transglycosylase SLT domain VS_RS04110 PF03466 LysR substrate binding domain VS_RS04110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS04115 PF01773 Na+ dependent nucleoside transporter N-terminus VS_RS04115 PF07662 Na+ dependent nucleoside transporter C-terminus VS_RS04115 PF07670 Nucleoside recognition VS_RS04125 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VS_RS04125 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VS_RS04140 PF01264 Chorismate synthase VS_RS04145 PF03458 UPF0126 domain VS_RS04150 PF04315 Elongation factor P hydroxylase VS_RS04155 PF08891 YfcL protein VS_RS04160 PF03358 NADPH-dependent FMN reductase VS_RS04165 PF01266 FAD dependent oxidoreductase VS_RS04165 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VS_RS04170 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_RS04170 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_RS04175 PF11890 Domain of unknown function (DUF3410) VS_RS04175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_RS04175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_RS04180 PF01118 Semialdehyde dehydrogenase, NAD binding domain VS_RS04180 PF02774 Semialdehyde dehydrogenase, dimerisation domain VS_RS04190 PF01416 tRNA pseudouridine synthase VS_RS04200 PF01039 Carboxyl transferase domain VS_RS04200 PF17848 Acetyl-coA carboxylase zinc finger domain VS_RS04205 PF02875 Mur ligase family, glutamate ligase domain VS_RS04205 PF08245 Mur ligase middle domain VS_RS04210 PF05036 Sporulation related domain VS_RS04215 PF02674 Colicin V production protein VS_RS04220 PF00156 Phosphoribosyl transferase domain VS_RS04225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS04225 PF03466 LysR substrate binding domain VS_RS04230 PF00072 Response regulator receiver domain VS_RS04240 PF04304 Protein of unknown function (DUF454) VS_RS04245 PF00156 Phosphoribosyl transferase domain VS_RS04250 PF12169 DNA polymerase III subunits gamma and tau domain III VS_RS04250 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VS_RS04250 PF12170 DNA polymerase III tau subunit V interacting with alpha VS_RS04255 PF02575 YbaB/EbfC DNA-binding family VS_RS04260 PF13662 Toprim domain VS_RS04260 PF02132 RecR protein VS_RS04265 PF00230 Major intrinsic protein VS_RS04280 PF03692 Putative zinc- or iron-chelating domain VS_RS04285 PF00245 Alkaline phosphatase VS_RS04290 PF02028 BCCT, betaine/carnitine/choline family transporter VS_RS04305 PF13847 Methyltransferase domain VS_RS04310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS04310 PF08447 PAS fold VS_RS04310 PF13426 PAS domain VS_RS04315 PF01263 Aldose 1-epimerase VS_RS04320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VS_RS04320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_RS04325 PF01641 SelR domain VS_RS04335 PF07023 Protein of unknown function (DUF1315) VS_RS04340 PF00710 Asparaginase, N-terminal VS_RS04340 PF17763 Glutaminase/Asparaginase C-terminal domain VS_RS04345 PF01343 Peptidase family S49 VS_RS04350 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_RS04350 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_RS04355 PF00881 Nitroreductase family VS_RS04360 PF01131 DNA topoisomerase VS_RS04360 PF01751 Toprim domain VS_RS04370 PF00106 short chain dehydrogenase VS_RS04375 PF00850 Histone deacetylase domain VS_RS04385 PF02082 Transcriptional regulator VS_RS04400 PF11893 Domain of unknown function (DUF3413) VS_RS04400 PF00884 Sulfatase VS_RS04405 PF07208 Protein of unknown function (DUF1414) VS_RS04410 PF04245 37-kD nucleoid-associated bacterial protein VS_RS04425 PF03553 Na+/H+ antiporter family VS_RS04430 PF01118 Semialdehyde dehydrogenase, NAD binding domain VS_RS04430 PF02774 Semialdehyde dehydrogenase, dimerisation domain VS_RS04435 PF00027 Cyclic nucleotide-binding domain VS_RS04435 PF00520 Ion transport protein VS_RS04440 PF01914 MarC family integral membrane protein VS_RS04445 PF00171 Aldehyde dehydrogenase family VS_RS04445 PF00465 Iron-containing alcohol dehydrogenase VS_RS04460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VS_RS04460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VS_RS04465 PF00462 Glutaredoxin VS_RS04475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS04475 PF00672 HAMP domain VS_RS04475 PF00512 His Kinase A (phospho-acceptor) domain VS_RS04475 PF00072 Response regulator receiver domain VS_RS04475 PF01627 Hpt domain VS_RS04475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VS_RS04485 PF13726 Na+-H+ antiporter family VS_RS04485 PF03553 Na+/H+ antiporter family VS_RS04490 PF00929 Exonuclease VS_RS04495 PF18393 MotY N-terminal domain VS_RS04495 PF00691 OmpA family VS_RS04500 PF10952 Protein of unknown function (DUF2753) VS_RS04505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_RS04510 PF00730 HhH-GPD superfamily base excision DNA repair protein VS_RS04510 PF00633 Helix-hairpin-helix motif VS_RS04510 PF10576 Iron-sulfur binding domain of endonuclease III VS_RS04515 PF02508 Rnf-Nqr subunit, membrane protein VS_RS04520 PF04205 FMN-binding domain VS_RS04525 PF03116 NQR2, RnfD, RnfE family VS_RS04535 PF04060 Putative Fe-S cluster VS_RS04540 PF02508 Rnf-Nqr subunit, membrane protein VS_RS04550 PF17757 UvrB interaction domain VS_RS04550 PF00271 Helicase conserved C-terminal domain VS_RS04550 PF02151 UvrB/uvrC motif VS_RS04550 PF04851 Type III restriction enzyme, res subunit VS_RS04550 PF12344 Ultra-violet resistance protein B VS_RS04555 PF00072 Response regulator receiver domain VS_RS04555 PF02954 Bacterial regulatory protein, Fis family VS_RS04555 PF00158 Sigma-54 interaction domain VS_RS04560 PF01627 Hpt domain VS_RS04565 PF01933 Uncharacterised protein family UPF0052 VS_RS04570 PF04055 Radical SAM superfamily VS_RS04570 PF06463 Molybdenum Cofactor Synthesis C VS_RS04575 PF00994 Probable molybdopterin binding domain VS_RS04580 PF01967 MoaC family VS_RS04585 PF02597 ThiS family VS_RS04590 PF02391 MoaE protein VS_RS04595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_RS04600 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS04605 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS04605 PF12911 N-terminal TM domain of oligopeptide transport permease C VS_RS04610 PF00005 ABC transporter VS_RS04610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_RS04615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_RS04615 PF00005 ABC transporter VS_RS04620 PF13409 Glutathione S-transferase, N-terminal domain VS_RS04625 PF00990 Diguanylate cyclase, GGDEF domain VS_RS04625 PF03707 Bacterial signalling protein N terminal repeat VS_RS04625 PF00563 EAL domain VS_RS04630 PF07085 DRTGG domain VS_RS04630 PF01515 Phosphate acetyl/butaryl transferase VS_RS04635 PF00871 Acetokinase family VS_RS04640 PF04217 Protein of unknown function, DUF412 VS_RS04650 PF00990 Diguanylate cyclase, GGDEF domain VS_RS04655 PF01207 Dihydrouridine synthase (Dus) VS_RS04660 PF00114 Pilin (bacterial filament) VS_RS04660 PF07963 Prokaryotic N-terminal methylation motif VS_RS04665 PF02810 SEC-C motif VS_RS04665 PF01043 SecA preprotein cross-linking domain VS_RS04665 PF07517 SecA DEAD-like domain VS_RS04665 PF07516 SecA Wing and Scaffold domain VS_RS04670 PF02600 Disulfide bond formation protein DsbB VS_RS04675 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VS_RS04680 PF07840 FadR C-terminal domain VS_RS04680 PF00392 Bacterial regulatory proteins, gntR family VS_RS04690 PF09334 tRNA synthetases class I (M) VS_RS04690 PF01588 Putative tRNA binding domain VS_RS04695 PF10609 NUBPL iron-transfer P-loop NTPase VS_RS04700 PF00485 Phosphoribulokinase / Uridine kinase family VS_RS04705 PF05170 AsmA family VS_RS04710 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VS_RS04710 PF12557 Cob(I)alamin adenosyltransferase N terminal VS_RS04715 PF01451 Low molecular weight phosphotyrosine protein phosphatase VS_RS04720 PF01740 STAS domain VS_RS04720 PF00916 Sulfate permease family VS_RS04725 PF12111 Polyribonucleotide phosphorylase C terminal VS_RS04725 PF00575 S1 RNA binding domain VS_RS04725 PF10150 Ribonuclease E/G family VS_RS04730 PF00849 RNA pseudouridylate synthase VS_RS04730 PF01479 S4 domain VS_RS04735 PF02545 Maf-like protein VS_RS04740 PF02620 Large ribosomal RNA subunit accumulation protein YceD VS_RS04745 PF01783 Ribosomal L32p protein family VS_RS04750 PF02504 Fatty acid synthesis protein VS_RS04755 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VS_RS04755 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VS_RS04760 PF00698 Acyl transferase domain VS_RS04770 PF00550 Phosphopantetheine attachment site VS_RS04775 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_RS04775 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_RS04780 PF01063 Amino-transferase class IV VS_RS04785 PF02618 YceG-like family VS_RS04790 PF02223 Thymidylate kinase VS_RS04795 PF09115 DNA polymerase III, delta subunit, C terminal VS_RS04800 PF01026 TatD related DNase VS_RS04805 PF02378 Phosphotransferase system, EIIC VS_RS04805 PF00367 phosphotransferase system, EIIB VS_RS04815 PF00209 Sodium:neurotransmitter symporter family VS_RS04825 PF01734 Patatin-like phospholipase VS_RS04830 PF00224 Pyruvate kinase, barrel domain VS_RS04830 PF02887 Pyruvate kinase, alpha/beta domain VS_RS04835 PF00480 ROK family VS_RS04840 PF00072 Response regulator receiver domain VS_RS04840 PF01584 CheW-like domain VS_RS04845 PF14579 Helix-hairpin-helix motif VS_RS04845 PF02811 PHP domain VS_RS04845 PF07733 Bacterial DNA polymerase III alpha NTPase domain VS_RS04845 PF01336 OB-fold nucleic acid binding domain VS_RS04845 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VS_RS04855 PF00154 recA bacterial DNA recombination protein VS_RS04860 PF00106 short chain dehydrogenase VS_RS04865 PF08496 Peptidase family S49 N-terminal VS_RS04865 PF01343 Peptidase family S49 VS_RS04870 PF04293 SpoVR like protein VS_RS04875 PF04285 Protein of unknown function (DUF444) VS_RS04880 PF08298 PrkA AAA domain VS_RS04880 PF06798 PrkA serine protein kinase C-terminal domain VS_RS04885 PF06629 MltA-interacting protein MipA VS_RS04890 PF03887 YfbU domain VS_RS04895 PF04055 Radical SAM superfamily VS_RS04905 PF01228 Glycine radical VS_RS04905 PF02901 Pyruvate formate lyase-like VS_RS04915 PF00005 ABC transporter VS_RS04920 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_RS04925 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS04930 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS04940 PF03372 Endonuclease/Exonuclease/phosphatase family VS_RS04945 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VS_RS04945 PF00326 Prolyl oligopeptidase family VS_RS04950 PF07690 Major Facilitator Superfamily VS_RS04955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS04955 PF00672 HAMP domain VS_RS04960 PF08007 Cupin superfamily protein VS_RS04965 PF10689 Protein of unknown function (DUF2496) VS_RS04975 PF01925 Sulfite exporter TauE/SafE VS_RS04980 PF13307 Helicase C-terminal domain VS_RS04980 PF06733 DEAD_2 VS_RS04990 PF00849 RNA pseudouridylate synthase VS_RS04995 PF03971 Monomeric isocitrate dehydrogenase VS_RS05000 PF00313 'Cold-shock' DNA-binding domain VS_RS05005 PF02617 ATP-dependent Clp protease adaptor protein ClpS VS_RS05010 PF07724 AAA domain (Cdc48 subfamily) VS_RS05010 PF00004 ATPase family associated with various cellular activities (AAA) VS_RS05010 PF10431 C-terminal, D2-small domain, of ClpB protein VS_RS05010 PF02861 Clp amino terminal domain, pathogenicity island component VS_RS05010 PF17871 AAA lid domain VS_RS05015 PF01176 Translation initiation factor 1A / IF-1 VS_RS05020 PF04376 Arginine-tRNA-protein transferase, N terminus VS_RS05020 PF04377 Arginine-tRNA-protein transferase, C terminus VS_RS05025 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VS_RS05035 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VS_RS05040 PF10692 Protein of unknown function (DUF2498) VS_RS05045 PF08272 Topoisomerase I zinc-ribbon-like VS_RS05045 PF01131 DNA topoisomerase VS_RS05045 PF01751 Toprim domain VS_RS05045 PF01396 Topoisomerase DNA binding C4 zinc finger VS_RS05050 PF00483 Nucleotidyl transferase VS_RS05055 PF08323 Starch synthase catalytic domain VS_RS05055 PF00534 Glycosyl transferases group 1 VS_RS05075 PF04994 TfoX C-terminal domain VS_RS05075 PF04993 TfoX N-terminal domain VS_RS05080 PF00356 Bacterial regulatory proteins, lacI family VS_RS05085 PF02613 Nitrate reductase delta subunit VS_RS05090 PF00072 Response regulator receiver domain VS_RS05090 PF00486 Transcriptional regulatory protein, C terminal VS_RS05095 PF02698 DUF218 domain VS_RS05100 PF13847 Methyltransferase domain VS_RS05105 PF17192 MukF middle domain VS_RS05105 PF03882 MukF winged-helix domain VS_RS05105 PF17193 MukF C-terminal domain VS_RS05110 PF04288 MukE-like family VS_RS05115 PF16330 MukB hinge domain VS_RS05115 PF04310 MukB N-terminal VS_RS05120 PF00672 HAMP domain VS_RS05120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS05120 PF02743 Cache domain VS_RS05135 PF08443 RimK-like ATP-grasp domain VS_RS05135 PF18030 RimK PreATP-grasp domain VS_RS05140 PF08003 Protein of unknown function (DUF1698) VS_RS05145 PF13649 Methyltransferase domain VS_RS05150 PF01904 Protein of unknown function DUF72 VS_RS05155 PF01336 OB-fold nucleic acid binding domain VS_RS05155 PF00152 tRNA synthetases class II (D, K and N) VS_RS05155 PF02938 GAD domain VS_RS05160 PF02075 Crossover junction endodeoxyribonuclease RuvC VS_RS05165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS05165 PF00672 HAMP domain VS_RS05165 PF02203 Tar ligand binding domain homologue VS_RS05170 PF07499 RuvA, C-terminal domain VS_RS05170 PF01330 RuvA N terminal domain VS_RS05175 PF05496 Holliday junction DNA helicase RuvB P-loop domain VS_RS05175 PF05491 RuvB C-terminal winged helix domain VS_RS05175 PF17864 RuvB AAA lid domain VS_RS05180 PF01654 Cytochrome bd terminal oxidase subunit I VS_RS05185 PF02322 Cytochrome bd terminal oxidase subunit II VS_RS05200 PF03061 Thioesterase superfamily VS_RS05205 PF01618 MotA/TolQ/ExbB proton channel family VS_RS05210 PF02472 Biopolymer transport protein ExbD/TolR VS_RS05220 PF04052 TolB amino-terminal domain VS_RS05220 PF07676 WD40-like Beta Propeller Repeat VS_RS05225 PF00691 OmpA family VS_RS05230 PF16331 TolA binding protein trimerisation VS_RS05230 PF13174 Tetratricopeptide repeat VS_RS05235 PF02445 Quinolinate synthetase A protein VS_RS05240 PF07715 TonB-dependent Receptor Plug Domain VS_RS05245 PF08021 Siderophore-interacting FAD-binding domain VS_RS05245 PF04954 Siderophore-interacting protein VS_RS05250 PF01497 Periplasmic binding protein VS_RS05255 PF01032 FecCD transport family VS_RS05260 PF01032 FecCD transport family VS_RS05265 PF00005 ABC transporter VS_RS05280 PF09308 LuxQ, periplasmic VS_RS05280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS05280 PF00512 His Kinase A (phospho-acceptor) domain VS_RS05280 PF00072 Response regulator receiver domain VS_RS05285 PF06610 L-alanine exporter VS_RS05295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS05295 PF03466 LysR substrate binding domain VS_RS05300 PF01266 FAD dependent oxidoreductase VS_RS05320 PF00486 Transcriptional regulatory protein, C terminal VS_RS05320 PF00072 Response regulator receiver domain VS_RS05325 PF00535 Glycosyl transferase family 2 VS_RS05330 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VS_RS05340 PF08497 Radical SAM N-terminal VS_RS05340 PF04055 Radical SAM superfamily VS_RS05340 PF11842 Domain of unknown function (DUF3362) VS_RS05355 PF03466 LysR substrate binding domain VS_RS05355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS05360 PF01717 Cobalamin-independent synthase, Catalytic domain VS_RS05360 PF08267 Cobalamin-independent synthase, N-terminal domain VS_RS05370 PF03795 YCII-related domain VS_RS05375 PF03061 Thioesterase superfamily VS_RS05380 PF04279 Intracellular septation protein A VS_RS05390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS05390 PF03466 LysR substrate binding domain VS_RS05395 PF00155 Aminotransferase class I and II VS_RS05400 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_RS05415 PF00672 HAMP domain VS_RS05415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS05415 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VS_RS05415 PF00072 Response regulator receiver domain VS_RS05415 PF01627 Hpt domain VS_RS05415 PF00512 His Kinase A (phospho-acceptor) domain VS_RS05420 PF00360 Phytochrome region VS_RS05420 PF00990 Diguanylate cyclase, GGDEF domain VS_RS05420 PF01590 GAF domain VS_RS05420 PF00563 EAL domain VS_RS05425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS05425 PF00672 HAMP domain VS_RS05445 PF01066 CDP-alcohol phosphatidyltransferase VS_RS05450 PF00005 ABC transporter VS_RS05455 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS05460 PF13416 Bacterial extracellular solute-binding protein VS_RS05470 PF06945 Protein of unknown function (DUF1289) VS_RS05485 PF00271 Helicase conserved C-terminal domain VS_RS05485 PF00270 DEAD/DEAH box helicase VS_RS05490 PF01810 LysE type translocator VS_RS05500 PF18027 Cytosolic carboxypeptidase N-terminal domain VS_RS05500 PF00246 Zinc carboxypeptidase VS_RS05520 PF00005 ABC transporter VS_RS05520 PF00571 CBS domain VS_RS05525 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS05530 PF04069 Substrate binding domain of ABC-type glycine betaine transport system VS_RS05540 PF03466 LysR substrate binding domain VS_RS05540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS05545 PF00005 ABC transporter VS_RS05545 PF00664 ABC transporter transmembrane region VS_RS05550 PF00664 ABC transporter transmembrane region VS_RS05550 PF00005 ABC transporter VS_RS05555 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_RS05585 PF00266 Aminotransferase class-V VS_RS05595 PF03466 LysR substrate binding domain VS_RS05595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS05600 PF00990 Diguanylate cyclase, GGDEF domain VS_RS05610 PF00072 Response regulator receiver domain VS_RS05610 PF00990 Diguanylate cyclase, GGDEF domain VS_RS05615 PF06942 GlpM protein VS_RS05620 PF00939 Sodium:sulfate symporter transmembrane region VS_RS05625 PF02698 DUF218 domain VS_RS05630 PF00390 Malic enzyme, N-terminal domain VS_RS05630 PF03949 Malic enzyme, NAD binding domain VS_RS05635 PF00271 Helicase conserved C-terminal domain VS_RS05635 PF04408 Helicase associated domain (HA2) VS_RS05635 PF00270 DEAD/DEAH box helicase VS_RS05635 PF08482 ATP-dependent helicase C-terminal VS_RS05645 PF01259 SAICAR synthetase VS_RS05665 PF00691 OmpA family VS_RS05680 PF13183 4Fe-4S dicluster domain VS_RS05680 PF01565 FAD binding domain VS_RS05680 PF02913 FAD linked oxidases, C-terminal domain VS_RS05685 PF04191 Phospholipid methyltransferase VS_RS05700 PF00221 Aromatic amino acid lyase VS_RS05705 PF17391 Urocanase N-terminal domain VS_RS05705 PF01175 Urocanase Rossmann-like domain VS_RS05705 PF17392 Urocanase C-terminal domain VS_RS05710 PF00491 Arginase family VS_RS05715 PF01979 Amidohydrolase family VS_RS05720 PF00392 Bacterial regulatory proteins, gntR family VS_RS05720 PF07702 UTRA domain VS_RS05725 PF07070 SpoOM protein VS_RS05760 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VS_RS05760 PF02824 TGS domain VS_RS05760 PF03129 Anticodon binding domain VS_RS05760 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VS_RS05765 PF05198 Translation initiation factor IF-3, N-terminal domain VS_RS05765 PF00707 Translation initiation factor IF-3, C-terminal domain VS_RS05770 PF01632 Ribosomal protein L35 VS_RS05775 PF00453 Ribosomal protein L20 VS_RS05780 PF04266 ASCH domain VS_RS05795 PF00005 ABC transporter VS_RS05795 PF16326 ABC transporter C-terminal domain VS_RS05795 PF12848 ABC transporter VS_RS05800 PF17932 Tetracyclin repressor-like, C-terminal domain VS_RS05800 PF00440 Bacterial regulatory proteins, tetR family VS_RS05805 PF00171 Aldehyde dehydrogenase family VS_RS05810 PF17810 Arginine decarboxylase helical bundle domain VS_RS05810 PF17944 Arginine decarboxylase C-terminal helical extension VS_RS05810 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VS_RS05815 PF00491 Arginase family VS_RS05825 PF00474 Sodium:solute symporter family VS_RS05830 PF01081 KDPG and KHG aldolase VS_RS05835 PF00294 pfkB family carbohydrate kinase VS_RS05840 PF07883 Cupin domain VS_RS05845 PF07940 Heparinase II/III-like protein VS_RS05845 PF05426 Alginate lyase VS_RS05850 PF07940 Heparinase II/III-like protein VS_RS05850 PF05426 Alginate lyase VS_RS05855 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VS_RS05855 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VS_RS05865 PF07729 FCD domain VS_RS05865 PF00392 Bacterial regulatory proteins, gntR family VS_RS05870 PF07729 FCD domain VS_RS05870 PF00392 Bacterial regulatory proteins, gntR family VS_RS05875 PF00571 CBS domain VS_RS05880 PF07733 Bacterial DNA polymerase III alpha NTPase domain VS_RS05880 PF11490 DNA polymerase III polC-type N-terminus II VS_RS05880 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VS_RS05880 PF00929 Exonuclease VS_RS05880 PF14579 Helix-hairpin-helix motif VS_RS05880 PF02811 PHP domain VS_RS05895 PF00474 Sodium:solute symporter family VS_RS05900 PF01641 SelR domain VS_RS05900 PF01625 Peptide methionine sulfoxide reductase VS_RS05915 PF01212 Beta-eliminating lyase VS_RS05920 PF03466 LysR substrate binding domain VS_RS05920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS05940 PF04151 Bacterial pre-peptidase C-terminal domain VS_RS05940 PF02868 Thermolysin metallopeptidase, alpha-helical domain VS_RS05940 PF01447 Thermolysin metallopeptidase, catalytic domain VS_RS05940 PF07504 Fungalysin/Thermolysin Propeptide Motif VS_RS05940 PF03413 Peptidase propeptide and YPEB domain VS_RS05975 PF00939 Sodium:sulfate symporter transmembrane region VS_RS05980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS05980 PF00512 His Kinase A (phospho-acceptor) domain VS_RS05980 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_RS05985 PF02954 Bacterial regulatory protein, Fis family VS_RS05985 PF00072 Response regulator receiver domain VS_RS05985 PF00158 Sigma-54 interaction domain VS_RS06005 PF00583 Acetyltransferase (GNAT) family VS_RS06020 PF01717 Cobalamin-independent synthase, Catalytic domain VS_RS06020 PF08267 Cobalamin-independent synthase, N-terminal domain VS_RS06030 PF01925 Sulfite exporter TauE/SafE VS_RS06055 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VS_RS06060 PF01810 LysE type translocator VS_RS06065 PF01235 Sodium:alanine symporter family VS_RS06085 PF01235 Sodium:alanine symporter family VS_RS06100 PF13533 Biotin-lipoyl like VS_RS06115 PF00989 PAS fold VS_RS06115 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VS_RS06115 PF17203 Single cache domain 3 VS_RS06115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS06120 PF00072 Response regulator receiver domain VS_RS06120 PF12431 Transcriptional regulator VS_RS06125 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VS_RS06125 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VS_RS06130 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VS_RS06135 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VS_RS06135 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VS_RS06140 PF00072 Response regulator receiver domain VS_RS06145 PF09905 DNA-binding protein VF530 VS_RS06160 PF01970 Tripartite tricarboxylate transporter TctA family VS_RS06175 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VS_RS06175 PF00072 Response regulator receiver domain VS_RS06175 PF00512 His Kinase A (phospho-acceptor) domain VS_RS06175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS06175 PF01627 Hpt domain VS_RS06175 PF00672 HAMP domain VS_RS06180 PF00072 Response regulator receiver domain VS_RS06185 PF00069 Protein kinase domain VS_RS06185 PF03793 PASTA domain VS_RS06200 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE VS_RS06230 PF07724 AAA domain (Cdc48 subfamily) VS_RS06230 PF17871 AAA lid domain VS_RS06230 PF00004 ATPase family associated with various cellular activities (AAA) VS_RS06230 PF10431 C-terminal, D2-small domain, of ClpB protein VS_RS06255 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath VS_RS06310 PF00285 Citrate synthase, C-terminal domain VS_RS06315 PF00694 Aconitase C-terminal domain VS_RS06315 PF00330 Aconitase family (aconitate hydratase) VS_RS06320 PF04303 PrpF protein VS_RS06325 PF16177 Acetyl-coenzyme A synthetase N-terminus VS_RS06325 PF00501 AMP-binding enzyme VS_RS06325 PF13193 AMP-binding enzyme C-terminal domain VS_RS06355 PF04055 Radical SAM superfamily VS_RS06360 PF06508 Queuosine biosynthesis protein QueC VS_RS06365 PF06508 Queuosine biosynthesis protein QueC VS_RS06390 PF00226 DnaJ domain VS_RS06390 PF01556 DnaJ C terminal domain VS_RS06390 PF00684 DnaJ central domain VS_RS06450 PF08463 EcoEI R protein C-terminal VS_RS06450 PF00271 Helicase conserved C-terminal domain VS_RS06450 PF04851 Type III restriction enzyme, res subunit VS_RS06450 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VS_RS06460 PF01420 Type I restriction modification DNA specificity domain VS_RS06520 PF00990 Diguanylate cyclase, GGDEF domain VS_RS06520 PF17151 Periplasmic sensor domain VS_RS06530 PF00691 OmpA family VS_RS06530 PF05736 OprF membrane domain VS_RS06545 PF10672 S-adenosylmethionine-dependent methyltransferase VS_RS06545 PF17785 PUA-like domain VS_RS06550 PF12729 Four helix bundle sensory module for signal transduction VS_RS06550 PF00672 HAMP domain VS_RS06550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS06555 PF00708 Acylphosphatase VS_RS06560 PF04358 DsrC like protein VS_RS06565 PF01027 Inhibitor of apoptosis-promoting Bax1 VS_RS06570 PF00005 ABC transporter VS_RS06575 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS06580 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS06585 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_RS06590 PF14824 Sirohaem biosynthesis protein central VS_RS06590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_RS06590 PF10414 Sirohaem synthase dimerisation region VS_RS06595 PF04461 Protein of unknown function (DUF520) VS_RS06600 PF00793 DAHP synthetase I family VS_RS06605 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VS_RS06605 PF02896 PEP-utilising enzyme, TIM barrel domain VS_RS06605 PF00391 PEP-utilising enzyme, mobile domain VS_RS06620 PF13509 S1 domain VS_RS06620 PF17783 CvfB-like winged helix domain VS_RS06625 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VS_RS06625 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VS_RS06625 PF01189 16S rRNA methyltransferase RsmB/F VS_RS06630 PF02470 MlaD protein VS_RS06635 PF04403 Paraquat-inducible protein A VS_RS06640 PF00005 ABC transporter VS_RS06640 PF00664 ABC transporter transmembrane region VS_RS06645 PF13185 GAF domain VS_RS06650 PF17516 ProQ C-terminal domain VS_RS06650 PF04352 ProQ/FINO family VS_RS06655 PF11818 C-terminal domain of tail specific protease (DUF3340) VS_RS06655 PF03572 Peptidase family S41 VS_RS06655 PF17804 Tail specific protease N-terminal domain VS_RS06655 PF00595 PDZ domain VS_RS06665 PF11940 Domain of unknown function (DUF3458) Ig-like fold VS_RS06665 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VS_RS06665 PF01433 Peptidase family M1 domain VS_RS06670 PF05088 Bacterial NAD-glutamate dehydrogenase VS_RS06675 PF01180 Dihydroorotate dehydrogenase VS_RS06680 PF07126 Cell-division protein ZapC VS_RS06685 PF10672 S-adenosylmethionine-dependent methyltransferase VS_RS06685 PF02926 THUMP domain VS_RS06685 PF01170 Putative RNA methylase family UPF0020 VS_RS06695 PF16326 ABC transporter C-terminal domain VS_RS06695 PF00005 ABC transporter VS_RS06695 PF12848 ABC transporter VS_RS06705 PF04957 Ribosome modulation factor VS_RS06710 PF07977 FabA-like domain VS_RS06715 PF05362 Lon protease (S16) C-terminal proteolytic domain VS_RS06715 PF13654 AAA domain VS_RS06720 PF06303 MatP N-terminal domain VS_RS06720 PF17414 MatP C-terminal ribbon-helix-helix domain VS_RS06785 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VS_RS06820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS06820 PF00512 His Kinase A (phospho-acceptor) domain VS_RS06820 PF09308 LuxQ, periplasmic VS_RS06820 PF00072 Response regulator receiver domain VS_RS06835 PF00115 Cytochrome C and Quinol oxidase polypeptide I VS_RS06850 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VS_RS06850 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VS_RS06860 PF00403 Heavy-metal-associated domain VS_RS06875 PF13545 Crp-like helix-turn-helix domain VS_RS06875 PF00027 Cyclic nucleotide-binding domain VS_RS06880 PF00582 Universal stress protein family VS_RS06885 PF01171 PP-loop family VS_RS06905 PF08402 TOBE domain VS_RS06905 PF00005 ABC transporter VS_RS06910 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS06915 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS06920 PF13416 Bacterial extracellular solute-binding protein VS_RS06925 PF13416 Bacterial extracellular solute-binding protein VS_RS06935 PF02146 Sir2 family VS_RS06940 PF00909 Ammonium Transporter Family VS_RS06955 PF13247 4Fe-4S dicluster domain VS_RS06960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VS_RS06960 PF01568 Molydopterin dinucleotide binding domain VS_RS06960 PF00384 Molybdopterin oxidoreductase VS_RS06970 PF02613 Nitrate reductase delta subunit VS_RS06990 PF02634 FdhD/NarQ family VS_RS07010 PF00512 His Kinase A (phospho-acceptor) domain VS_RS07010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS07015 PF02954 Bacterial regulatory protein, Fis family VS_RS07015 PF00158 Sigma-54 interaction domain VS_RS07015 PF00072 Response regulator receiver domain VS_RS07020 PF12849 PBP superfamily domain VS_RS07025 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS07030 PF00005 ABC transporter VS_RS07030 PF08402 TOBE domain VS_RS07035 PF12804 MobA-like NTP transferase domain VS_RS07040 PF03453 MoeA N-terminal region (domain I and II) VS_RS07040 PF03454 MoeA C-terminal region (domain IV) VS_RS07040 PF00994 Probable molybdopterin binding domain VS_RS07045 PF00990 Diguanylate cyclase, GGDEF domain VS_RS07055 PF00480 ROK family VS_RS07060 PF03942 DTW domain VS_RS07070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS07070 PF00672 HAMP domain VS_RS07070 PF12729 Four helix bundle sensory module for signal transduction VS_RS07075 PF00877 NlpC/P60 family VS_RS07085 PF03881 Fructosamine kinase VS_RS07090 PF00677 Lumazine binding domain VS_RS07095 PF01554 MatE VS_RS07100 PF14743 DNA ligase OB-like domain VS_RS07100 PF01068 ATP dependent DNA ligase domain VS_RS07110 PF00691 OmpA family VS_RS07110 PF01389 OmpA-like transmembrane domain VS_RS07130 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS07135 PF00571 CBS domain VS_RS07135 PF00005 ABC transporter VS_RS07145 PF02954 Bacterial regulatory protein, Fis family VS_RS07145 PF00072 Response regulator receiver domain VS_RS07145 PF00158 Sigma-54 interaction domain VS_RS07150 PF00534 Glycosyl transferases group 1 VS_RS07150 PF13439 Glycosyltransferase Family 4 VS_RS07175 PF00534 Glycosyl transferases group 1 VS_RS07175 PF13439 Glycosyltransferase Family 4 VS_RS07185 PF02397 Bacterial sugar transferase VS_RS07190 PF17200 Single Cache domain 2 VS_RS07190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS07190 PF00672 HAMP domain VS_RS07205 PF00873 AcrB/AcrD/AcrF family VS_RS07210 PF02321 Outer membrane efflux protein VS_RS07250 PF13419 Haloacid dehalogenase-like hydrolase VS_RS07275 PF02540 NAD synthase VS_RS07275 PF00795 Carbon-nitrogen hydrolase VS_RS07280 PF04986 Putative transposase VS_RS07280 PF14319 Transposase zinc-binding domain VS_RS07285 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS07290 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS07295 PF00497 Bacterial extracellular solute-binding proteins, family 3 VS_RS07300 PF00005 ABC transporter VS_RS07305 PF00664 ABC transporter transmembrane region VS_RS07305 PF00005 ABC transporter VS_RS07315 PF12392 Collagenase VS_RS07315 PF01136 Peptidase family U32 VS_RS07330 PF03616 Sodium/glutamate symporter VS_RS07355 PF00132 Bacterial transferase hexapeptide (six repeats) VS_RS07370 PF13419 Haloacid dehalogenase-like hydrolase VS_RS07375 PF07516 SecA Wing and Scaffold domain VS_RS07375 PF01043 SecA preprotein cross-linking domain VS_RS07375 PF07517 SecA DEAD-like domain VS_RS07375 PF02810 SEC-C motif VS_RS07395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_RS07400 PF01810 LysE type translocator VS_RS07425 PF00293 NUDIX domain VS_RS07440 PF03737 Aldolase/RraA VS_RS07470 PF00849 RNA pseudouridylate synthase VS_RS07470 PF01479 S4 domain VS_RS07485 PF00293 NUDIX domain VS_RS07510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_RS07510 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_RS07520 PF03009 Glycerophosphoryl diester phosphodiesterase family VS_RS07525 PF07690 Major Facilitator Superfamily VS_RS07555 PF00582 Universal stress protein family VS_RS07560 PF00875 DNA photolyase VS_RS07560 PF03441 FAD binding domain of DNA photolyase VS_RS07565 PF04244 Deoxyribodipyrimidine photo-lyase-related protein VS_RS07580 PF13476 AAA domain VS_RS07585 PF00149 Calcineurin-like phosphoesterase VS_RS07585 PF12320 Type 5 capsule protein repressor C-terminal domain VS_RS07600 PF01810 LysE type translocator VS_RS07605 PF00583 Acetyltransferase (GNAT) family VS_RS07610 PF00990 Diguanylate cyclase, GGDEF domain VS_RS07620 PF07715 TonB-dependent Receptor Plug Domain VS_RS07620 PF00593 TonB dependent receptor VS_RS07625 PF03466 LysR substrate binding domain VS_RS07625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS07635 PF12729 Four helix bundle sensory module for signal transduction VS_RS07635 PF00672 HAMP domain VS_RS07635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS07645 PF01545 Cation efflux family VS_RS07650 PF00884 Sulfatase VS_RS07655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS07655 PF03466 LysR substrate binding domain VS_RS07660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS07660 PF03466 LysR substrate binding domain VS_RS07665 PF00709 Adenylosuccinate synthetase VS_RS07675 PF13091 PLD-like domain VS_RS07695 PF00271 Helicase conserved C-terminal domain VS_RS07695 PF12137 RNA polymerase recycling family C-terminal VS_RS07695 PF00176 SNF2 family N-terminal domain VS_RS07695 PF18339 RapA N-terminal Tudor like domain 1 VS_RS07695 PF18337 RapA N-terminal Tudor like domain VS_RS07700 PF00145 C-5 cytosine-specific DNA methylase VS_RS07705 PF13361 UvrD-like helicase C-terminal domain VS_RS07705 PF00580 UvrD/REP helicase N-terminal domain VS_RS07705 PF12462 DNA helicase IV / RNA helicase N terminal VS_RS07710 PF13391 HNH endonuclease VS_RS07720 PF00075 RNase H VS_RS07730 PF04002 RadC-like JAB domain VS_RS07790 PF13356 Arm DNA-binding domain VS_RS07790 PF00589 Phage integrase family VS_RS07810 PF05230 MASE2 domain VS_RS07810 PF00990 Diguanylate cyclase, GGDEF domain VS_RS07815 PF01546 Peptidase family M20/M25/M40 VS_RS07815 PF07687 Peptidase dimerisation domain VS_RS07830 PF04204 Homoserine O-succinyltransferase VS_RS07840 PF05971 RNA methyltransferase VS_RS07845 PF01863 Protein of unknown function DUF45 VS_RS07855 PF03466 LysR substrate binding domain VS_RS07855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS07860 PF07690 Major Facilitator Superfamily VS_RS07870 PF00990 Diguanylate cyclase, GGDEF domain VS_RS07880 PF00583 Acetyltransferase (GNAT) family VS_RS07890 PF02322 Cytochrome bd terminal oxidase subunit II VS_RS07895 PF01654 Cytochrome bd terminal oxidase subunit I VS_RS07900 PF00392 Bacterial regulatory proteins, gntR family VS_RS07900 PF00155 Aminotransferase class I and II VS_RS07915 PF00005 ABC transporter VS_RS07920 PF01032 FecCD transport family VS_RS07925 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VS_RS07940 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VS_RS07945 PF02654 Cobalamin-5-phosphate synthase VS_RS07950 PF02277 Phosphoribosyltransferase VS_RS07955 PF01613 Flavin reductase like domain VS_RS07960 PF13460 NAD(P)H-binding VS_RS07965 PF00375 Sodium:dicarboxylate symporter family VS_RS07975 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) VS_RS07980 PF03372 Endonuclease/Exonuclease/phosphatase family VS_RS08000 PF04116 Fatty acid hydroxylase superfamily VS_RS08005 PF00929 Exonuclease VS_RS08005 PF08411 Exonuclease C-terminal VS_RS08010 PF03788 LrgA family VS_RS08015 PF04172 LrgB-like family VS_RS08020 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VS_RS08020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VS_RS08025 PF02222 ATP-grasp domain VS_RS08030 PF05724 Thiopurine S-methyltransferase (TPMT) VS_RS08040 PF00216 Bacterial DNA-binding protein VS_RS08050 PF00392 Bacterial regulatory proteins, gntR family VS_RS08050 PF00155 Aminotransferase class I and II VS_RS08055 PF00155 Aminotransferase class I and II VS_RS08060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS08060 PF00072 Response regulator receiver domain VS_RS08065 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VS_RS08075 PF17200 Single Cache domain 2 VS_RS08075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS08075 PF00672 HAMP domain VS_RS08105 PF00216 Bacterial DNA-binding protein VS_RS08120 PF02001 Protein of unknown function DUF134 VS_RS08135 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_RS08140 PF01037 Lrp/AsnC ligand binding domain VS_RS08155 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VS_RS08160 PF02152 Dihydroneopterin aldolase VS_RS08165 PF01227 GTP cyclohydrolase I VS_RS08180 PF01734 Patatin-like phospholipase VS_RS08245 PF03484 tRNA synthetase B5 domain VS_RS08245 PF01588 Putative tRNA binding domain VS_RS08245 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VS_RS08245 PF03147 Ferredoxin-fold anticodon binding domain VS_RS08245 PF03483 B3/4 domain VS_RS08250 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VS_RS08250 PF01409 tRNA synthetases class II core domain (F) VS_RS08290 PF11898 Domain of unknown function (DUF3418) VS_RS08290 PF00270 DEAD/DEAH box helicase VS_RS08290 PF00271 Helicase conserved C-terminal domain VS_RS08290 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VS_RS08290 PF04408 Helicase associated domain (HA2) VS_RS08320 PF00486 Transcriptional regulatory protein, C terminal VS_RS08340 PF00990 Diguanylate cyclase, GGDEF domain VS_RS08350 PF00012 Hsp70 protein VS_RS08370 PF13302 Acetyltransferase (GNAT) domain VS_RS08375 PF18024 Helix-turn-helix domain VS_RS08375 PF00158 Sigma-54 interaction domain VS_RS08380 PF05128 Domain of unknown function (DUF697) VS_RS08385 PF04317 YcjX-like family, DUF463 VS_RS08400 PF04715 Anthranilate synthase component I, N terminal region VS_RS08400 PF00425 chorismate binding enzyme VS_RS08410 PF09308 LuxQ, periplasmic VS_RS08410 PF00512 His Kinase A (phospho-acceptor) domain VS_RS08410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS08410 PF00072 Response regulator receiver domain VS_RS08420 PF00293 NUDIX domain VS_RS08425 PF03222 Tryptophan/tyrosine permease family VS_RS08430 PF03315 Serine dehydratase beta chain VS_RS08430 PF03313 Serine dehydratase alpha chain VS_RS08435 PF03222 Tryptophan/tyrosine permease family VS_RS08440 PF01242 6-pyruvoyl tetrahydropterin synthase VS_RS08445 PF00672 HAMP domain VS_RS08445 PF12729 Four helix bundle sensory module for signal transduction VS_RS08445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS08450 PF01740 STAS domain VS_RS08450 PF00916 Sulfate permease family VS_RS08455 PF00152 tRNA synthetases class II (D, K and N) VS_RS08455 PF01336 OB-fold nucleic acid binding domain VS_RS08480 PF00155 Aminotransferase class I and II VS_RS08480 PF00392 Bacterial regulatory proteins, gntR family VS_RS08490 PF00672 HAMP domain VS_RS08490 PF01966 HD domain VS_RS08505 PF00155 Aminotransferase class I and II VS_RS08520 PF02811 PHP domain VS_RS08520 PF00929 Exonuclease VS_RS08520 PF14579 Helix-hairpin-helix motif VS_RS08520 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VS_RS08520 PF07733 Bacterial DNA polymerase III alpha NTPase domain VS_RS08525 PF03473 MOSC domain VS_RS08525 PF03475 3-alpha domain VS_RS08530 PF00266 Aminotransferase class-V VS_RS08540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS08540 PF00512 His Kinase A (phospho-acceptor) domain VS_RS08545 PF02954 Bacterial regulatory protein, Fis family VS_RS08545 PF00072 Response regulator receiver domain VS_RS08545 PF00158 Sigma-54 interaction domain VS_RS08555 PF04994 TfoX C-terminal domain VS_RS08555 PF04993 TfoX N-terminal domain VS_RS08570 PF03956 Lysine exporter LysO VS_RS08580 PF00282 Pyridoxal-dependent decarboxylase conserved domain VS_RS08585 PF01380 SIS domain VS_RS08585 PF01418 Helix-turn-helix domain, rpiR family VS_RS08590 PF00465 Iron-containing alcohol dehydrogenase VS_RS08595 PF00462 Glutaredoxin VS_RS08600 PF02080 TrkA-C domain VS_RS08600 PF06826 Predicted Permease Membrane Region VS_RS08605 PF07055 Enoyl reductase FAD binding domain VS_RS08605 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VS_RS08605 PF12241 Trans-2-enoyl-CoA reductase catalytic region VS_RS08610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VS_RS08610 PF02770 Acyl-CoA dehydrogenase, middle domain VS_RS08610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VS_RS08610 PF09317 Domain of unknown function (DUF1974) VS_RS08615 PF16295 Tetracyclin repressor-like, C-terminal domain VS_RS08615 PF00440 Bacterial regulatory proteins, tetR family VS_RS08635 PF06965 Na+/H+ antiporter 1 VS_RS08650 PF00005 ABC transporter VS_RS08655 PF01554 MatE VS_RS08660 PF11066 Protein of unknown function (DUF2867) VS_RS08660 PF13460 NAD(P)H-binding VS_RS08670 PF07690 Major Facilitator Superfamily VS_RS08675 PF01479 S4 domain VS_RS08675 PF00849 RNA pseudouridylate synthase VS_RS08680 PF00271 Helicase conserved C-terminal domain VS_RS08680 PF04851 Type III restriction enzyme, res subunit VS_RS08685 PF08448 PAS fold VS_RS08685 PF00563 EAL domain VS_RS08685 PF00990 Diguanylate cyclase, GGDEF domain VS_RS08695 PF00072 Response regulator receiver domain VS_RS08695 PF00486 Transcriptional regulatory protein, C terminal VS_RS08700 PF00512 His Kinase A (phospho-acceptor) domain VS_RS08700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS08700 PF00672 HAMP domain VS_RS08705 PF09335 SNARE associated Golgi protein VS_RS08710 PF00535 Glycosyl transferase family 2 VS_RS08710 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 VS_RS08715 PF01386 Ribosomal L25p family VS_RS08755 PF01548 Transposase VS_RS08755 PF02371 Transposase IS116/IS110/IS902 family VS_RS08770 PF13333 Integrase core domain VS_RS08770 PF13276 HTH-like domain VS_RS08770 PF00665 Integrase core domain VS_RS08785 PF00293 NUDIX domain VS_RS08800 PF01548 Transposase VS_RS08800 PF02371 Transposase IS116/IS110/IS902 family VS_RS08820 PF00186 Dihydrofolate reductase VS_RS08830 PF01337 Barstar (barnase inhibitor) VS_RS08850 PF13495 Phage integrase, N-terminal SAM-like domain VS_RS08850 PF00589 Phage integrase family VS_RS08855 PF00067 Cytochrome P450 VS_RS08885 PF00268 Ribonucleotide reductase, small chain VS_RS08890 PF08343 Ribonucleotide reductase N-terminal VS_RS08890 PF02867 Ribonucleotide reductase, barrel domain VS_RS08890 PF00317 Ribonucleotide reductase, all-alpha domain VS_RS08895 PF07972 NrdI Flavodoxin like VS_RS08905 PF01521 Iron-sulphur cluster biosynthesis VS_RS08910 PF01458 Uncharacterized protein family (UPF0051) VS_RS08915 PF00005 ABC transporter VS_RS08920 PF01458 Uncharacterized protein family (UPF0051) VS_RS08925 PF00266 Aminotransferase class-V VS_RS08930 PF02657 Fe-S metabolism associated domain VS_RS08935 PF00672 HAMP domain VS_RS08935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS08940 PF02028 BCCT, betaine/carnitine/choline family transporter VS_RS08945 PF02028 BCCT, betaine/carnitine/choline family transporter VS_RS08950 PF00072 Response regulator receiver domain VS_RS08950 PF00196 Bacterial regulatory proteins, luxR family VS_RS08955 PF17200 Single Cache domain 2 VS_RS08955 PF07730 Histidine kinase VS_RS08960 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VS_RS08970 PF03480 Bacterial extracellular solute-binding protein, family 7 VS_RS08985 PF00753 Metallo-beta-lactamase superfamily VS_RS08990 PF05951 Bacterial protein of unknown function (DUF882) VS_RS08995 PF01471 Putative peptidoglycan binding domain VS_RS08995 PF03734 L,D-transpeptidase catalytic domain VS_RS09020 PF00925 GTP cyclohydrolase II VS_RS09030 PF03918 Cytochrome C biogenesis protein VS_RS09035 PF08534 Redoxin VS_RS09040 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VS_RS09040 PF01578 Cytochrome C assembly protein VS_RS09045 PF03916 Polysulphide reductase, NrfD VS_RS09050 PF13247 4Fe-4S dicluster domain VS_RS09060 PF02335 Cytochrome c552 VS_RS09065 PF00581 Rhodanese-like domain VS_RS09075 PF00521 DNA gyrase/topoisomerase IV, subunit A VS_RS09075 PF03989 DNA gyrase C-terminal domain, beta-propeller VS_RS09085 PF00317 Ribonucleotide reductase, all-alpha domain VS_RS09085 PF02867 Ribonucleotide reductase, barrel domain VS_RS09085 PF03477 ATP cone domain VS_RS09090 PF00268 Ribonucleotide reductase, small chain VS_RS09095 PF00970 Oxidoreductase FAD-binding domain VS_RS09095 PF00111 2Fe-2S iron-sulfur cluster binding domain VS_RS09095 PF00175 Oxidoreductase NAD-binding domain VS_RS09100 PF00994 Probable molybdopterin binding domain VS_RS09115 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VS_RS09120 PF16653 Saccharopine dehydrogenase C-terminal domain VS_RS09120 PF03435 Saccharopine dehydrogenase NADP binding domain VS_RS09125 PF00202 Aminotransferase class-III VS_RS09150 PF01066 CDP-alcohol phosphatidyltransferase VS_RS09160 PF00196 Bacterial regulatory proteins, luxR family VS_RS09160 PF00072 Response regulator receiver domain VS_RS09165 PF00136 DNA polymerase family B VS_RS09165 PF03104 DNA polymerase family B, exonuclease domain VS_RS09175 PF01132 Elongation factor P (EF-P) OB domain VS_RS09175 PF08207 Elongation factor P (EF-P) KOW-like domain VS_RS09175 PF09285 Elongation factor P, C-terminal VS_RS09180 PF04269 Protein of unknown function, DUF440 VS_RS09190 PF00849 RNA pseudouridylate synthase VS_RS09190 PF01479 S4 domain VS_RS09195 PF01300 Telomere recombination VS_RS09200 PF02811 PHP domain VS_RS09205 PF08056 Tryptophan operon leader peptide VS_RS09210 PF00425 chorismate binding enzyme VS_RS09210 PF04715 Anthranilate synthase component I, N terminal region VS_RS09215 PF00117 Glutamine amidotransferase class-I VS_RS09220 PF02885 Glycosyl transferase family, helical bundle domain VS_RS09220 PF00591 Glycosyl transferase family, a/b domain VS_RS09225 PF00218 Indole-3-glycerol phosphate synthase VS_RS09225 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VS_RS09230 PF00291 Pyridoxal-phosphate dependent enzyme VS_RS09235 PF00290 Tryptophan synthase alpha chain VS_RS09240 PF16200 C-terminal region of band_7 VS_RS09240 PF01145 SPFH domain / Band 7 family VS_RS09250 PF00375 Sodium:dicarboxylate symporter family VS_RS09260 PF13276 HTH-like domain VS_RS09260 PF13333 Integrase core domain VS_RS09260 PF00665 Integrase core domain VS_RS09265 PF10672 S-adenosylmethionine-dependent methyltransferase VS_RS09265 PF02926 THUMP domain VS_RS09265 PF01170 Putative RNA methylase family UPF0020 VS_RS09270 PF00849 RNA pseudouridylate synthase VS_RS09275 PF00672 HAMP domain VS_RS09275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS09275 PF12729 Four helix bundle sensory module for signal transduction VS_RS09280 PF00209 Sodium:neurotransmitter symporter family VS_RS09285 PF13091 PLD-like domain VS_RS09285 PF13396 Phospholipase_D-nuclease N-terminal VS_RS09290 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_RS09305 PF03352 Methyladenine glycosylase VS_RS09310 PF00873 AcrB/AcrD/AcrF family VS_RS09315 PF13533 Biotin-lipoyl like VS_RS09320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VS_RS09320 PF00529 HlyD membrane-fusion protein of T1SS VS_RS09325 PF04024 PspC domain VS_RS09330 PF06667 Phage shock protein B VS_RS09335 PF04012 PspA/IM30 family VS_RS09340 PF02954 Bacterial regulatory protein, Fis family VS_RS09340 PF00158 Sigma-54 interaction domain VS_RS09345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_RS09350 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS09355 PF12911 N-terminal TM domain of oligopeptide transport permease C VS_RS09355 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS09360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_RS09360 PF00005 ABC transporter VS_RS09365 PF00005 ABC transporter VS_RS09380 PF02833 DHHA2 domain VS_RS09380 PF01368 DHH family VS_RS09390 PF18364 Molybdopterin oxidoreductase N-terminal domain VS_RS09390 PF00384 Molybdopterin oxidoreductase VS_RS09390 PF01568 Molydopterin dinucleotide binding domain VS_RS09395 PF03264 NapC/NirT cytochrome c family, N-terminal region VS_RS09400 PF06796 Periplasmic nitrate reductase protein NapE VS_RS09405 PF03649 Uncharacterised protein family (UPF0014) VS_RS09410 PF01226 Formate/nitrite transporter VS_RS09435 PF00265 Thymidine kinase VS_RS09440 PF01406 tRNA synthetases class I (C) catalytic domain VS_RS09440 PF09190 DALR domain VS_RS09445 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VS_RS09450 PF00149 Calcineurin-like phosphoesterase VS_RS09455 PF08668 HDOD domain VS_RS09455 PF00563 EAL domain VS_RS09460 PF02810 SEC-C motif VS_RS09465 PF01502 Phosphoribosyl-AMP cyclohydrolase VS_RS09465 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VS_RS09470 PF00977 Histidine biosynthesis protein VS_RS09475 PF00977 Histidine biosynthesis protein VS_RS09480 PF00117 Glutamine amidotransferase class-I VS_RS09485 PF00475 Imidazoleglycerol-phosphate dehydratase VS_RS09485 PF08645 Polynucleotide kinase 3 phosphatase VS_RS09490 PF00155 Aminotransferase class I and II VS_RS09495 PF00815 Histidinol dehydrogenase VS_RS09500 PF01634 ATP phosphoribosyltransferase VS_RS09500 PF08029 HisG, C-terminal domain VS_RS09505 PF03553 Na+/H+ antiporter family VS_RS09510 PF00816 H-NS histone family VS_RS09515 PF00294 pfkB family carbohydrate kinase VS_RS09530 PF04356 Protein of unknown function (DUF489) VS_RS09535 PF00206 Lyase VS_RS09535 PF08328 Adenylosuccinate lyase C-terminal VS_RS09540 PF01435 Peptidase family M48 VS_RS09550 PF08241 Methyltransferase domain VS_RS09555 PF00155 Aminotransferase class I and II VS_RS09560 PF06968 Biotin and Thiamin Synthesis associated domain VS_RS09560 PF04055 Radical SAM superfamily VS_RS09565 PF00202 Aminotransferase class-III VS_RS09575 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VS_RS09575 PF02403 Seryl-tRNA synthetase N-terminal domain VS_RS09580 PF12002 MgsA AAA+ ATPase C terminal VS_RS09580 PF16193 AAA C-terminal domain VS_RS09580 PF00004 ATPase family associated with various cellular activities (AAA) VS_RS09585 PF03548 Outer membrane lipoprotein carrier protein LolA VS_RS09590 PF01580 FtsK/SpoIIIE family VS_RS09590 PF09397 Ftsk gamma domain VS_RS09590 PF17854 FtsK alpha domain VS_RS09590 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VS_RS09595 PF01037 Lrp/AsnC ligand binding domain VS_RS09600 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VS_RS09600 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VS_RS09610 PF03466 LysR substrate binding domain VS_RS09610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS09620 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VS_RS09625 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VS_RS09630 PF18073 Rubredoxin metal binding domain VS_RS09635 PF06305 Lipopolysaccharide assembly protein A domain VS_RS09640 PF00216 Bacterial DNA-binding protein VS_RS09645 PF00575 S1 RNA binding domain VS_RS09650 PF02224 Cytidylate kinase VS_RS09655 PF02348 Cytidylyltransferase VS_RS09660 PF03966 Trm112p-like protein VS_RS09665 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VS_RS09670 PF00005 ABC transporter VS_RS09670 PF00664 ABC transporter transmembrane region VS_RS09675 PF00753 Metallo-beta-lactamase superfamily VS_RS09675 PF03772 Competence protein VS_RS09685 PF12704 MacB-like periplasmic core domain VS_RS09685 PF02687 FtsX-like permease family VS_RS09690 PF00005 ABC transporter VS_RS09695 PF12704 MacB-like periplasmic core domain VS_RS09695 PF02687 FtsX-like permease family VS_RS09705 PF03461 TRCF domain VS_RS09705 PF17757 UvrB interaction domain VS_RS09705 PF00270 DEAD/DEAH box helicase VS_RS09705 PF02559 CarD-like/TRCF domain VS_RS09705 PF00271 Helicase conserved C-terminal domain VS_RS09720 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_RS09725 PF05728 Uncharacterised protein family (UPF0227) VS_RS09735 PF13036 Peptidoglycan-synthase activator LpoB VS_RS09735 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VS_RS09750 PF01230 HIT domain VS_RS09755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS09755 PF00672 HAMP domain VS_RS09765 PF01048 Phosphorylase superfamily VS_RS09770 PF00403 Heavy-metal-associated domain VS_RS09775 PF01554 MatE VS_RS09780 PF00571 CBS domain VS_RS09780 PF01743 Poly A polymerase head domain VS_RS09790 PF00591 Glycosyl transferase family, a/b domain VS_RS09790 PF02885 Glycosyl transferase family, helical bundle domain VS_RS09805 PF01323 DSBA-like thioredoxin domain VS_RS09810 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VS_RS09825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_RS09830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VS_RS09855 PF00753 Metallo-beta-lactamase superfamily VS_RS09855 PF14863 Alkyl sulfatase dimerisation VS_RS09855 PF14864 Alkyl sulfatase C-terminal VS_RS09865 PF00873 AcrB/AcrD/AcrF family VS_RS09875 PF00440 Bacterial regulatory proteins, tetR family VS_RS09875 PF17932 Tetracyclin repressor-like, C-terminal domain VS_RS09880 PF03466 LysR substrate binding domain VS_RS09880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS09885 PF08803 Putative mono-oxygenase ydhR VS_RS09895 PF08212 Lipocalin-like domain VS_RS09900 PF07969 Amidohydrolase family VS_RS09910 PF00005 ABC transporter VS_RS09915 PF01497 Periplasmic binding protein VS_RS09920 PF01032 FecCD transport family VS_RS09930 PF07715 TonB-dependent Receptor Plug Domain VS_RS09930 PF00593 TonB dependent receptor VS_RS09945 PF00085 Thioredoxin VS_RS09950 PF02683 Cytochrome C biogenesis protein transmembrane region VS_RS09950 PF11412 Disulphide bond corrector protein DsbC VS_RS09970 PF03330 Lytic transglycolase VS_RS09970 PF05036 Sporulation related domain VS_RS09980 PF00578 AhpC/TSA family VS_RS09980 PF10417 C-terminal domain of 1-Cys peroxiredoxin VS_RS09985 PF13192 Thioredoxin domain VS_RS09985 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_RS09990 PF01810 LysE type translocator VS_RS09995 PF01037 Lrp/AsnC ligand binding domain VS_RS10010 PF00376 MerR family regulatory protein VS_RS10010 PF09278 MerR, DNA binding VS_RS10015 PF03466 LysR substrate binding domain VS_RS10015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS10030 PF01645 Conserved region in glutamate synthase VS_RS10030 PF13187 4Fe-4S dicluster domain VS_RS10040 PF02954 Bacterial regulatory protein, Fis family VS_RS10040 PF00158 Sigma-54 interaction domain VS_RS10040 PF00072 Response regulator receiver domain VS_RS10055 PF03109 ABC1 family VS_RS10060 PF00255 Glutathione peroxidase VS_RS10085 PF00535 Glycosyl transferase family 2 VS_RS10090 PF13439 Glycosyltransferase Family 4 VS_RS10090 PF00534 Glycosyl transferases group 1 VS_RS10095 PF01693 Caulimovirus viroplasmin VS_RS10125 PF13649 Methyltransferase domain VS_RS10135 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VS_RS10140 PF09619 Type III secretion system lipoprotein chaperone (YscW) VS_RS10155 PF13404 AsnC-type helix-turn-helix domain VS_RS10155 PF01037 Lrp/AsnC ligand binding domain VS_RS10160 PF00291 Pyridoxal-phosphate dependent enzyme VS_RS10170 PF00873 AcrB/AcrD/AcrF family VS_RS10175 PF13533 Biotin-lipoyl like VS_RS10225 PF07690 Major Facilitator Superfamily VS_RS10230 PF03601 Conserved hypothetical protein 698 VS_RS10240 PF03466 LysR substrate binding domain VS_RS10240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS10245 PF00367 phosphotransferase system, EIIB VS_RS10245 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VS_RS10245 PF02378 Phosphotransferase system, EIIC VS_RS10250 PF13193 AMP-binding enzyme C-terminal domain VS_RS10250 PF00501 AMP-binding enzyme VS_RS10255 PF13378 Enolase C-terminal domain-like VS_RS10260 PF00378 Enoyl-CoA hydratase/isomerase VS_RS10265 PF00561 alpha/beta hydrolase fold VS_RS10270 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VS_RS10270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VS_RS10270 PF16582 Middle domain of thiamine pyrophosphate VS_RS10275 PF00425 chorismate binding enzyme VS_RS10280 PF00155 Aminotransferase class I and II VS_RS10290 PF01966 HD domain VS_RS10290 PF13286 Phosphohydrolase-associated domain VS_RS10310 PF13145 PPIC-type PPIASE domain VS_RS10315 PF00216 Bacterial DNA-binding protein VS_RS10320 PF02190 ATP-dependent protease La (LON) substrate-binding domain VS_RS10320 PF05362 Lon protease (S16) C-terminal proteolytic domain VS_RS10320 PF00004 ATPase family associated with various cellular activities (AAA) VS_RS10325 PF10431 C-terminal, D2-small domain, of ClpB protein VS_RS10325 PF06689 ClpX C4-type zinc finger VS_RS10325 PF07724 AAA domain (Cdc48 subfamily) VS_RS10330 PF00574 Clp protease VS_RS10335 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_RS10335 PF05697 Bacterial trigger factor protein (TF) VS_RS10335 PF05698 Bacterial trigger factor protein (TF) C-terminus VS_RS10340 PF00512 His Kinase A (phospho-acceptor) domain VS_RS10340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS10340 PF02743 Cache domain VS_RS10345 PF00158 Sigma-54 interaction domain VS_RS10345 PF02954 Bacterial regulatory protein, Fis family VS_RS10345 PF00072 Response regulator receiver domain VS_RS10350 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VS_RS10355 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VS_RS10360 PF03480 Bacterial extracellular solute-binding protein, family 7 VS_RS10370 PF01648 4'-phosphopantetheinyl transferase superfamily VS_RS10380 PF14765 Polyketide synthase dehydratase VS_RS10380 PF00698 Acyl transferase domain VS_RS10380 PF16197 Ketoacyl-synthetase C-terminal extension VS_RS10380 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_RS10380 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_RS10380 PF08659 KR domain VS_RS10380 PF00550 Phosphopantetheine attachment site VS_RS10390 PF16197 Ketoacyl-synthetase C-terminal extension VS_RS10390 PF00698 Acyl transferase domain VS_RS10390 PF08659 KR domain VS_RS10390 PF00109 Beta-ketoacyl synthase, N-terminal domain VS_RS10390 PF00550 Phosphopantetheine attachment site VS_RS10390 PF14765 Polyketide synthase dehydratase VS_RS10390 PF02801 Beta-ketoacyl synthase, C-terminal domain VS_RS10395 PF00698 Acyl transferase domain VS_RS10395 PF03060 Nitronate monooxygenase VS_RS10400 PF00570 HRDC domain VS_RS10400 PF01612 3'-5' exonuclease VS_RS10405 PF13193 AMP-binding enzyme C-terminal domain VS_RS10405 PF00501 AMP-binding enzyme VS_RS10410 PF00561 alpha/beta hydrolase fold VS_RS10425 PF00814 Glycoprotease family VS_RS10430 PF04851 Type III restriction enzyme, res subunit VS_RS10430 PF13307 Helicase C-terminal domain VS_RS10440 PF00551 Formyl transferase VS_RS10440 PF01842 ACT domain VS_RS10445 PF06185 YecM protein VS_RS10450 PF03485 Arginyl tRNA synthetase N terminal domain VS_RS10450 PF00750 tRNA synthetases class I (R) VS_RS10450 PF05746 DALR anticodon binding domain VS_RS10465 PF07670 Nucleoside recognition VS_RS10465 PF02421 Ferrous iron transport protein B VS_RS10465 PF07664 Ferrous iron transport protein B C terminus VS_RS10470 PF04023 FeoA domain VS_RS10480 PF12833 Helix-turn-helix domain VS_RS10485 PF01297 Zinc-uptake complex component A periplasmic VS_RS10490 PF00005 ABC transporter VS_RS10495 PF00950 ABC 3 transport family VS_RS10500 PF00549 CoA-ligase VS_RS10500 PF02629 CoA binding domain VS_RS10505 PF00549 CoA-ligase VS_RS10505 PF08442 ATP-grasp domain VS_RS10510 PF00364 Biotin-requiring enzyme VS_RS10510 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VS_RS10510 PF02817 e3 binding domain VS_RS10515 PF16078 2-oxoglutarate dehydrogenase N-terminus VS_RS10515 PF16870 2-oxoglutarate dehydrogenase C-terminal VS_RS10515 PF02779 Transketolase, pyrimidine binding domain VS_RS10515 PF00676 Dehydrogenase E1 component VS_RS10520 PF13085 2Fe-2S iron-sulfur cluster binding domain VS_RS10530 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VS_RS10535 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VS_RS10540 PF00285 Citrate synthase, C-terminal domain VS_RS10545 PF01784 NIF3 (NGG1p interacting factor 3) VS_RS10555 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VS_RS10555 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VS_RS10555 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VS_RS10555 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VS_RS10560 PF03925 SeqA protein C-terminal domain VS_RS10560 PF17206 SeqA protein N-terminal domain VS_RS10565 PF12697 Alpha/beta hydrolase family VS_RS10575 PF00258 Flavodoxin VS_RS10585 PF01475 Ferric uptake regulator family VS_RS10590 PF00749 tRNA synthetases class I (E and Q), catalytic domain VS_RS10590 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VS_RS10595 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VS_RS10595 PF00367 phosphotransferase system, EIIB VS_RS10595 PF02378 Phosphotransferase system, EIIC VS_RS10600 PF01979 Amidohydrolase family VS_RS10605 PF00480 ROK family VS_RS10605 PF01047 MarR family VS_RS10610 PF00999 Sodium/hydrogen exchanger family VS_RS10610 PF02254 TrkA-N domain VS_RS10615 PF13537 Glutamine amidotransferase domain VS_RS10615 PF00733 Asparagine synthase VS_RS10620 PF02357 Transcription termination factor nusG VS_RS10625 PF00854 POT family VS_RS10630 PF00762 Ferrochelatase VS_RS10635 PF05191 Adenylate kinase, active site lid VS_RS10640 PF00183 Hsp90 protein VS_RS10640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS10645 PF00486 Transcriptional regulatory protein, C terminal VS_RS10650 PF17323 Trans-membrane regulatory protein ToxS VS_RS10660 PF12850 Calcineurin-like phosphoesterase superfamily domain VS_RS10665 PF00571 CBS domain VS_RS10675 PF07556 Protein of unknown function (DUF1538) VS_RS10680 PF07556 Protein of unknown function (DUF1538) VS_RS10685 PF08338 Domain of unknown function (DUF1731) VS_RS10685 PF01370 NAD dependent epimerase/dehydratase family VS_RS10690 PF00106 short chain dehydrogenase VS_RS10695 PF00085 Thioredoxin VS_RS10700 PF01145 SPFH domain / Band 7 family VS_RS10700 PF16200 C-terminal region of band_7 VS_RS10710 PF13411 MerR HTH family regulatory protein VS_RS10720 PF13609 Gram-negative porin VS_RS10725 PF00533 BRCA1 C Terminus (BRCT) domain VS_RS10725 PF01653 NAD-dependent DNA ligase adenylation domain VS_RS10725 PF03120 NAD-dependent DNA ligase OB-fold domain VS_RS10725 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VS_RS10725 PF12826 Helix-hairpin-helix motif VS_RS10730 PF04354 ZipA, C-terminal FtsZ-binding domain VS_RS10740 PF00291 Pyridoxal-phosphate dependent enzyme VS_RS10745 PF00381 PTS HPr component phosphorylation site VS_RS10750 PF02896 PEP-utilising enzyme, TIM barrel domain VS_RS10750 PF00391 PEP-utilising enzyme, mobile domain VS_RS10750 PF05524 PEP-utilising enzyme, N-terminal VS_RS10755 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VS_RS10760 PF00669 Bacterial flagellin N-terminal helical region VS_RS10760 PF07196 Flagellin hook IN motif VS_RS10760 PF00700 Bacterial flagellin C-terminal helical region VS_RS10765 PF00669 Bacterial flagellin N-terminal helical region VS_RS10765 PF00700 Bacterial flagellin C-terminal helical region VS_RS10765 PF07196 Flagellin hook IN motif VS_RS10770 PF04261 Dyp-type peroxidase family VS_RS10775 PF11143 Protein of unknown function (DUF2919) VS_RS10795 PF03960 ArsC family VS_RS10800 PF07687 Peptidase dimerisation domain VS_RS10800 PF01546 Peptidase family M20/M25/M40 VS_RS10815 PF06804 NlpB/DapX lipoprotein VS_RS10820 PF00701 Dihydrodipicolinate synthetase family VS_RS10830 PF00578 AhpC/TSA family VS_RS10835 PF01594 AI-2E family transporter VS_RS10845 PF01435 Peptidase family M48 VS_RS10845 PF13181 Tetratricopeptide repeat VS_RS10850 PF03960 ArsC family VS_RS10855 PF03358 NADPH-dependent FMN reductase VS_RS10870 PF00860 Permease family VS_RS10880 PF02769 AIR synthase related protein, C-terminal domain VS_RS10880 PF00586 AIR synthase related protein, N-terminal domain VS_RS10885 PF00551 Formyl transferase VS_RS10890 PF13230 Glutamine amidotransferases class-II VS_RS10895 PF13580 SIS domain VS_RS10900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VS_RS10900 PF09317 Domain of unknown function (DUF1974) VS_RS10900 PF02770 Acyl-CoA dehydrogenase, middle domain VS_RS10900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VS_RS10910 PF00929 Exonuclease VS_RS10915 PF00075 RNase H VS_RS10920 PF13276 HTH-like domain VS_RS10920 PF00665 Integrase core domain VS_RS10920 PF13333 Integrase core domain VS_RS10930 PF08241 Methyltransferase domain VS_RS10935 PF16123 Hydroxyacylglutathione hydrolase C-terminus VS_RS10935 PF00753 Metallo-beta-lactamase superfamily VS_RS10940 PF01476 LysM domain VS_RS10940 PF01464 Transglycosylase SLT domain VS_RS10950 PF03372 Endonuclease/Exonuclease/phosphatase family VS_RS10955 PF00543 Nitrogen regulatory protein P-II VS_RS10960 PF00034 Cytochrome c VS_RS10965 PF01171 PP-loop family VS_RS10965 PF09179 TilS substrate binding domain VS_RS10965 PF11734 TilS substrate C-terminal domain VS_RS10970 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VS_RS10975 PF01336 OB-fold nucleic acid binding domain VS_RS10975 PF02811 PHP domain VS_RS10975 PF14579 Helix-hairpin-helix motif VS_RS10975 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VS_RS10975 PF07733 Bacterial DNA polymerase III alpha NTPase domain VS_RS10980 PF01351 Ribonuclease HII VS_RS10985 PF02684 Lipid-A-disaccharide synthetase VS_RS10990 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VS_RS10990 PF00132 Bacterial transferase hexapeptide (six repeats) VS_RS10995 PF07977 FabA-like domain VS_RS11000 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VS_RS11000 PF00132 Bacterial transferase hexapeptide (six repeats) VS_RS11005 PF03938 Outer membrane protein (OmpH-like) VS_RS11010 PF07244 Surface antigen variable number repeat VS_RS11010 PF01103 Surface antigen VS_RS11015 PF02163 Peptidase family M50 VS_RS11015 PF17820 PDZ domain VS_RS11030 PF01255 Putative undecaprenyl diphosphate synthase VS_RS11040 PF01765 Ribosome recycling factor VS_RS11045 PF00696 Amino acid kinase family VS_RS11050 PF00889 Elongation factor TS VS_RS11055 PF00318 Ribosomal protein S2 VS_RS11060 PF00557 Metallopeptidase family M24 VS_RS11065 PF01909 Nucleotidyltransferase domain VS_RS11065 PF08335 GlnD PII-uridylyltransferase VS_RS11065 PF01842 ACT domain VS_RS11065 PF01966 HD domain VS_RS11070 PF11944 Protein of unknown function (DUF3461) VS_RS11075 PF00849 RNA pseudouridylate synthase VS_RS11080 PF04287 tRNA pseudouridine synthase C VS_RS11105 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VS_RS11110 PF03806 AbgT putative transporter family VS_RS11115 PF01197 Ribosomal protein L31 VS_RS11120 PF01980 tRNA-methyltransferase O VS_RS11120 PF18389 TrmO C-terminal domain VS_RS11125 PF04073 Aminoacyl-tRNA editing domain VS_RS11125 PF03129 Anticodon binding domain VS_RS11125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VS_RS11135 PF06786 Uncharacterised protein family (UPF0253) VS_RS11150 PF00464 Serine hydroxymethyltransferase VS_RS11155 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 VS_RS11155 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) VS_RS11170 PF00128 Alpha amylase, catalytic domain VS_RS11170 PF16657 Maltogenic Amylase, C-terminal domain VS_RS11175 PF00367 phosphotransferase system, EIIB VS_RS11175 PF02378 Phosphotransferase system, EIIC VS_RS11180 PF00356 Bacterial regulatory proteins, lacI family VS_RS11195 PF09383 NIL domain VS_RS11195 PF00005 ABC transporter VS_RS11200 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS11205 PF03180 NLPA lipoprotein VS_RS11215 PF13276 HTH-like domain VS_RS11215 PF00665 Integrase core domain VS_RS11215 PF13333 Integrase core domain VS_RS11225 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VS_RS11230 PF07348 Syd protein (SUKH-2) VS_RS11235 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VS_RS11235 PF14489 QueF-like protein VS_RS11245 PF00990 Diguanylate cyclase, GGDEF domain VS_RS11250 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VS_RS11250 PF11892 Domain of unknown function (DUF3412) VS_RS11250 PF03641 Possible lysine decarboxylase VS_RS11255 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VS_RS11255 PF01367 5'-3' exonuclease, C-terminal SAM fold VS_RS11260 PF07715 TonB-dependent Receptor Plug Domain VS_RS11260 PF00593 TonB dependent receptor VS_RS11265 PF01728 FtsJ-like methyltransferase VS_RS11265 PF18125 RlmM ferredoxin-like domain VS_RS11280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS11280 PF03466 LysR substrate binding domain VS_RS11285 PF02568 Thiamine biosynthesis protein (ThiI) VS_RS11285 PF02926 THUMP domain VS_RS11290 PF13677 Membrane MotB of proton-channel complex MotA/MotB VS_RS11290 PF00691 OmpA family VS_RS11295 PF01618 MotA/TolQ/ExbB proton channel family VS_RS11300 PF02609 Exonuclease VII small subunit VS_RS11305 PF00348 Polyprenyl synthetase VS_RS11310 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VS_RS11310 PF02779 Transketolase, pyrimidine binding domain VS_RS11310 PF02780 Transketolase, C-terminal domain VS_RS11315 PF04608 Phosphatidylglycerophosphatase A VS_RS11320 PF02769 AIR synthase related protein, C-terminal domain VS_RS11320 PF00586 AIR synthase related protein, N-terminal domain VS_RS11325 PF01029 NusB family VS_RS11330 PF00885 6,7-dimethyl-8-ribityllumazine synthase VS_RS11335 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VS_RS11335 PF00925 GTP cyclohydrolase II VS_RS11340 PF00677 Lumazine binding domain VS_RS11345 PF01872 RibD C-terminal domain VS_RS11345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VS_RS11350 PF03477 ATP cone domain VS_RS11355 PF00171 Aldehyde dehydrogenase family VS_RS11360 PF01472 PUA domain VS_RS11360 PF00696 Amino acid kinase family VS_RS11365 PF07417 Sigma factor-binding transcriptional regulator Crl VS_RS11375 PF00156 Phosphoribosyl transferase domain VS_RS11380 PF00860 Permease family VS_RS11390 PF07687 Peptidase dimerisation domain VS_RS11390 PF01546 Peptidase family M20/M25/M40 VS_RS11420 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) VS_RS11420 PF02382 N-terminal domain in RTX protein VS_RS11420 PF03497 Anthrax toxin LF subunit VS_RS11425 PF03466 LysR substrate binding domain VS_RS11425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS11430 PF02417 Chromate transporter VS_RS11435 PF01209 ubiE/COQ5 methyltransferase family VS_RS11465 PF00437 Type II/IV secretion system protein VS_RS11495 PF04972 BON domain VS_RS11495 PF13629 Pilus formation protein N terminal region VS_RS11495 PF00263 Bacterial type II and III secretion system protein VS_RS11520 PF12833 Helix-turn-helix domain VS_RS11520 PF02311 AraC-like ligand binding domain VS_RS11525 PF00501 AMP-binding enzyme VS_RS11535 PF03466 LysR substrate binding domain VS_RS11535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS11540 PF09905 DNA-binding protein VF530 VS_RS11545 PF00679 Elongation factor G C-terminus VS_RS11545 PF03144 Elongation factor Tu domain 2 VS_RS11545 PF14492 Elongation Factor G, domain II VS_RS11545 PF03764 Elongation factor G, domain IV VS_RS11545 PF00009 Elongation factor Tu GTP binding domain VS_RS11550 PF18073 Rubredoxin metal binding domain VS_RS11560 PF18429 Domain of unknown function (DUF5609) VS_RS11570 PF01048 Phosphorylase superfamily VS_RS11575 PF01676 Metalloenzyme superfamily VS_RS11580 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VS_RS11580 PF02885 Glycosyl transferase family, helical bundle domain VS_RS11580 PF00591 Glycosyl transferase family, a/b domain VS_RS11585 PF01791 DeoC/LacD family aldolase VS_RS11590 PF07662 Na+ dependent nucleoside transporter C-terminus VS_RS11590 PF07670 Nucleoside recognition VS_RS11590 PF01773 Na+ dependent nucleoside transporter N-terminus VS_RS11595 PF01026 TatD related DNase VS_RS11600 PF03144 Elongation factor Tu domain 2 VS_RS11600 PF00009 Elongation factor Tu GTP binding domain VS_RS11600 PF16658 Class II release factor RF3, C-terminal domain VS_RS11605 PF00583 Acetyltransferase (GNAT) family VS_RS11615 PF13508 Acetyltransferase (GNAT) domain VS_RS11620 PF02036 SCP-2 sterol transfer family VS_RS11625 PF03707 Bacterial signalling protein N terminal repeat VS_RS11625 PF00990 Diguanylate cyclase, GGDEF domain VS_RS11625 PF00563 EAL domain VS_RS11630 PF01136 Peptidase family U32 VS_RS11635 PF01136 Peptidase family U32 VS_RS11640 PF01554 MatE VS_RS11650 PF07719 Tetratricopeptide repeat VS_RS11650 PF13181 Tetratricopeptide repeat VS_RS11655 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VS_RS11655 PF00013 KH domain VS_RS11655 PF03725 3' exoribonuclease family, domain 2 VS_RS11655 PF01138 3' exoribonuclease family, domain 1 VS_RS11655 PF00575 S1 RNA binding domain VS_RS11660 PF00312 Ribosomal protein S15 VS_RS11665 PF09157 Pseudouridine synthase II TruB, C-terminal VS_RS11665 PF01509 TruB family pseudouridylate synthase (N terminal domain) VS_RS11665 PF16198 tRNA pseudouridylate synthase B C-terminal domain VS_RS11670 PF02033 Ribosome-binding factor A VS_RS11675 PF00009 Elongation factor Tu GTP binding domain VS_RS11675 PF04760 Translation initiation factor IF-2, N-terminal region VS_RS11675 PF08364 Bacterial translation initiation factor IF-2 associated region VS_RS11675 PF11987 Translation-initiation factor 2 VS_RS11680 PF00575 S1 RNA binding domain VS_RS11680 PF08529 NusA N-terminal domain VS_RS11680 PF13184 NusA-like KH domain VS_RS11685 PF17384 RimP C-terminal SH3 domain VS_RS11685 PF02576 RimP N-terminal domain VS_RS11700 PF03840 Preprotein translocase SecG subunit VS_RS11705 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VS_RS11705 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VS_RS11705 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VS_RS11705 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VS_RS11710 PF00809 Pterin binding enzyme VS_RS11715 PF00004 ATPase family associated with various cellular activities (AAA) VS_RS11715 PF06480 FtsH Extracellular VS_RS11715 PF01434 Peptidase family M41 VS_RS11715 PF17862 AAA+ lid domain VS_RS11720 PF01728 FtsJ-like methyltransferase VS_RS11725 PF01985 CRS1 / YhbY (CRM) domain VS_RS11730 PF01272 Transcription elongation factor, GreA/GreB, C-term VS_RS11730 PF03449 Transcription elongation factor, N-terminal VS_RS11735 PF13609 Gram-negative porin VS_RS11740 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VS_RS11745 PF01769 Divalent cation transporter VS_RS11745 PF03448 MgtE intracellular N domain VS_RS11745 PF00571 CBS domain VS_RS11750 PF00579 tRNA synthetases class I (W and Y) VS_RS11755 PF01551 Peptidase family M23 VS_RS11755 PF08525 Opacity-associated protein A N-terminal motif VS_RS11755 PF01476 LysM domain VS_RS11760 PF00873 AcrB/AcrD/AcrF family VS_RS11770 PF01521 Iron-sulphur cluster biosynthesis VS_RS11775 PF00202 Aminotransferase class-III VS_RS11785 PF01594 AI-2E family transporter VS_RS11790 PF08468 Methyltransferase small domain N-terminal VS_RS11790 PF05175 Methyltransferase small domain VS_RS11795 PF17149 Periplasmic sensor domain found in signal transduction proteins VS_RS11795 PF00672 HAMP domain VS_RS11795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS11795 PF00512 His Kinase A (phospho-acceptor) domain VS_RS11795 PF01627 Hpt domain VS_RS11795 PF00072 Response regulator receiver domain VS_RS11800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VS_RS11805 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS11810 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS11810 PF12911 N-terminal TM domain of oligopeptide transport permease C VS_RS11815 PF00005 ABC transporter VS_RS11815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_RS11820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_RS11820 PF00005 ABC transporter VS_RS11830 PF01869 BadF/BadG/BcrA/BcrD ATPase family VS_RS11835 PF02838 Glycosyl hydrolase family 20, domain 2 VS_RS11835 PF00728 Glycosyl hydrolase family 20, catalytic domain VS_RS11840 PF06165 Glycosyltransferase family 36 VS_RS11840 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VS_RS11845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VS_RS11845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VS_RS11845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VS_RS11845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VS_RS11850 PF00005 ABC transporter VS_RS11850 PF08402 TOBE domain VS_RS11860 PF13416 Bacterial extracellular solute-binding protein VS_RS11865 PF00909 Ammonium Transporter Family VS_RS11870 PF00543 Nitrogen regulatory protein P-II VS_RS11875 PF06062 Uncharacterised protein family (UPF0231) VS_RS11880 PF00330 Aconitase family (aconitate hydratase) VS_RS11880 PF11791 Aconitate B N-terminal domain VS_RS11880 PF06434 Aconitate hydratase 2 N-terminus VS_RS11885 PF01734 Patatin-like phospholipase VS_RS11890 PF14814 Bifunctional transglycosylase second domain VS_RS11890 PF00905 Penicillin binding protein transpeptidase domain VS_RS11890 PF00912 Transglycosylase VS_RS11895 PF00271 Helicase conserved C-terminal domain VS_RS11895 PF08482 ATP-dependent helicase C-terminal VS_RS11895 PF04408 Helicase associated domain (HA2) VS_RS11895 PF00270 DEAD/DEAH box helicase VS_RS11900 PF17746 SfsA N-terminal OB domain VS_RS11900 PF03749 Sugar fermentation stimulation protein RE domain VS_RS11905 PF01258 Prokaryotic dksA/traR C4-type zinc finger VS_RS11910 PF00749 tRNA synthetases class I (E and Q), catalytic domain VS_RS11915 PF01743 Poly A polymerase head domain VS_RS11915 PF12626 Polymerase A arginine-rich C-terminus VS_RS11915 PF12627 Probable RNA and SrmB- binding site of polymerase A VS_RS11920 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VS_RS11925 PF02548 Ketopantoate hydroxymethyltransferase VS_RS11930 PF02569 Pantoate-beta-alanine ligase VS_RS11935 PF01061 ABC-2 type transporter VS_RS11940 PF00005 ABC transporter VS_RS11945 PF01740 STAS domain VS_RS11945 PF00916 Sulfate permease family VS_RS11950 PF00484 Carbonic anhydrase VS_RS11955 PF00156 Phosphoribosyl transferase domain VS_RS11960 PF00440 Bacterial regulatory proteins, tetR family VS_RS11965 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_RS11965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_RS11970 PF00364 Biotin-requiring enzyme VS_RS11970 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VS_RS11970 PF02817 e3 binding domain VS_RS11975 PF17831 Pyruvate dehydrogenase E1 component middle domain VS_RS11975 PF00456 Transketolase, thiamine diphosphate binding domain VS_RS11980 PF07729 FCD domain VS_RS11980 PF00392 Bacterial regulatory proteins, gntR family VS_RS11990 PF01510 N-acetylmuramoyl-L-alanine amidase VS_RS12000 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VS_RS12000 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VS_RS12005 PF00114 Pilin (bacterial filament) VS_RS12005 PF07963 Prokaryotic N-terminal methylation motif VS_RS12010 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VS_RS12010 PF00437 Type II/IV secretion system protein VS_RS12015 PF00482 Type II secretion system (T2SS), protein F VS_RS12020 PF01478 Type IV leader peptidase family VS_RS12020 PF06750 Bacterial Peptidase A24 N-terminal domain VS_RS12030 PF07072 Cell division protein VS_RS12035 PF03884 DNA gyrase inhibitor YacG VS_RS12040 PF01245 Ribosomal protein L19 VS_RS12045 PF01746 tRNA (Guanine-1)-methyltransferase VS_RS12050 PF01782 RimM N-terminal domain VS_RS12050 PF05239 PRC-barrel domain VS_RS12055 PF00886 Ribosomal protein S16 VS_RS12060 PF00448 SRP54-type protein, GTPase domain VS_RS12060 PF02881 SRP54-type protein, helical bundle domain VS_RS12060 PF02978 Signal peptide binding domain VS_RS12065 PF01578 Cytochrome C assembly protein VS_RS12070 PF01595 Cyclin M transmembrane N-terminal domain VS_RS12070 PF03471 Transporter associated domain VS_RS12070 PF00571 CBS domain VS_RS12075 PF02664 S-Ribosylhomocysteinase (LuxS) VS_RS12085 PF04262 Glutamate-cysteine ligase VS_RS12090 PF05193 Peptidase M16 inactive domain VS_RS12090 PF00675 Insulinase (Peptidase family M16) VS_RS12095 PF09335 SNARE associated Golgi protein VS_RS12100 PF00107 Zinc-binding dehydrogenase VS_RS12100 PF08240 Alcohol dehydrogenase GroES-like domain VS_RS12105 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VS_RS12110 PF02436 Conserved carboxylase domain VS_RS12110 PF00682 HMGL-like VS_RS12110 PF00364 Biotin-requiring enzyme VS_RS12115 PF04277 Oxaloacetate decarboxylase, gamma chain VS_RS12170 PF02599 Global regulator protein family VS_RS12175 PF00696 Amino acid kinase family VS_RS12175 PF01842 ACT domain VS_RS12175 PF13840 ACT domain VS_RS12180 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VS_RS12180 PF02272 DHHA1 domain VS_RS12180 PF01411 tRNA synthetases class II (A) VS_RS12185 PF00128 Alpha amylase, catalytic domain VS_RS12185 PF00686 Starch binding domain VS_RS12190 PF17912 MalK OB fold domain VS_RS12190 PF00005 ABC transporter VS_RS12200 PF00132 Bacterial transferase hexapeptide (six repeats) VS_RS12200 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VS_RS12210 PF13416 Bacterial extracellular solute-binding protein VS_RS12215 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS12220 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS12225 PF16657 Maltogenic Amylase, C-terminal domain VS_RS12225 PF00128 Alpha amylase, catalytic domain VS_RS12225 PF02903 Alpha amylase, N-terminal ig-like domain VS_RS12240 PF00154 recA bacterial DNA recombination protein VS_RS12245 PF02464 Competence-damaged protein VS_RS12250 PF00488 MutS domain V VS_RS12250 PF05188 MutS domain II VS_RS12250 PF01624 MutS domain I VS_RS12250 PF05190 MutS family domain IV VS_RS12250 PF05192 MutS domain III VS_RS12255 PF04545 Sigma-70, region 4 VS_RS12255 PF00140 Sigma-70 factor, region 1.2 VS_RS12255 PF04542 Sigma-70 region 2 VS_RS12255 PF04539 Sigma-70 region 3 VS_RS12260 PF01551 Peptidase family M23 VS_RS12260 PF01476 LysM domain VS_RS12270 PF01975 Survival protein SurE VS_RS12275 PF01142 tRNA pseudouridine synthase D (TruD) VS_RS12280 PF02542 YgbB family VS_RS12285 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VS_RS12290 PF04977 Septum formation initiator VS_RS12295 PF03952 Enolase, N-terminal domain VS_RS12295 PF00113 Enolase, C-terminal TIM barrel domain VS_RS12300 PF06418 CTP synthase N-terminus VS_RS12300 PF00117 Glutamine amidotransferase class-I VS_RS12305 PF03819 MazG nucleotide pyrophosphohydrolase domain VS_RS12310 PF04607 Region found in RelA / SpoT proteins VS_RS12310 PF13291 ACT domain VS_RS12310 PF02824 TGS domain VS_RS12315 PF01938 TRAM domain VS_RS12315 PF05958 tRNA (Uracil-5-)-methyltransferase VS_RS12320 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VS_RS12320 PF00072 Response regulator receiver domain VS_RS12320 PF01627 Hpt domain VS_RS12320 PF00512 His Kinase A (phospho-acceptor) domain VS_RS12320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS12320 PF00672 HAMP domain VS_RS12325 PF01648 4'-phosphopantetheinyl transferase superfamily VS_RS12330 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VS_RS12335 PF11967 Recombination protein O N terminal VS_RS12335 PF02565 Recombination protein O C terminal VS_RS12340 PF07650 KH domain VS_RS12340 PF01926 50S ribosome-binding GTPase VS_RS12345 PF00035 Double-stranded RNA binding motif VS_RS12345 PF14622 Ribonuclease-III-like VS_RS12350 PF10502 Signal peptidase, peptidase S26 VS_RS12355 PF00679 Elongation factor G C-terminus VS_RS12355 PF00009 Elongation factor Tu GTP binding domain VS_RS12355 PF03144 Elongation factor Tu domain 2 VS_RS12355 PF06421 GTP-binding protein LepA C-terminus VS_RS12365 PF03888 MucB/RseB N-terminal domain VS_RS12365 PF17188 MucB/RseB C-terminal domain VS_RS12370 PF03872 Anti sigma-E protein RseA, N-terminal domain VS_RS12370 PF03873 Anti sigma-E protein RseA, C-terminal domain VS_RS12375 PF08281 Sigma-70, region 4 VS_RS12375 PF04542 Sigma-70 region 2 VS_RS12380 PF02910 Fumarate reductase flavoprotein C-term VS_RS12380 PF00890 FAD binding domain VS_RS12385 PF03937 Flavinator of succinate dehydrogenase VS_RS12405 PF01494 FAD binding domain VS_RS12410 PF01494 FAD binding domain VS_RS12415 PF03695 Uncharacterised protein family (UPF0149) VS_RS12420 PF05164 Cell division protein ZapA VS_RS12425 PF01812 5-formyltetrahydrofolate cyclo-ligase family VS_RS12430 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VS_RS12435 PF01842 ACT domain VS_RS12435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VS_RS12435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VS_RS12445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS12445 PF03466 LysR substrate binding domain VS_RS12450 PF01810 LysE type translocator VS_RS12455 PF00924 Mechanosensitive ion channel VS_RS12455 PF05552 Conserved TM helix VS_RS12460 PF01116 Fructose-bisphosphate aldolase class-II VS_RS12465 PF00162 Phosphoglycerate kinase VS_RS12470 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VS_RS12470 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_RS12475 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VS_RS12475 PF00367 phosphotransferase system, EIIB VS_RS12475 PF02378 Phosphotransferase system, EIIC VS_RS12480 PF01547 Bacterial extracellular solute-binding protein VS_RS12485 PF00512 His Kinase A (phospho-acceptor) domain VS_RS12485 PF08521 Two-component sensor kinase N-terminal VS_RS12485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS12490 PF00486 Transcriptional regulatory protein, C terminal VS_RS12490 PF00072 Response regulator receiver domain VS_RS12500 PF00456 Transketolase, thiamine diphosphate binding domain VS_RS12500 PF02779 Transketolase, pyrimidine binding domain VS_RS12500 PF02780 Transketolase, C-terminal domain VS_RS12505 PF02772 S-adenosylmethionine synthetase, central domain VS_RS12505 PF00438 S-adenosylmethionine synthetase, N-terminal domain VS_RS12505 PF02773 S-adenosylmethionine synthetase, C-terminal domain VS_RS12510 PF00005 ABC transporter VS_RS12520 PF01032 FecCD transport family VS_RS12525 PF00300 Histidine phosphatase superfamily (branch 1) VS_RS12530 PF01888 CbiD VS_RS12535 PF02570 Precorrin-8X methylmutase VS_RS12540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_RS12545 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_RS12550 PF01890 Cobalamin synthesis G C-terminus VS_RS12550 PF11761 Cobalamin biosynthesis central region VS_RS12550 PF11760 Cobalamin synthesis G N-terminal VS_RS12560 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VS_RS12560 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_RS12565 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VS_RS12570 PF03186 CobD/Cbib protein VS_RS12575 PF00155 Aminotransferase class I and II VS_RS12580 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VS_RS12580 PF07685 CobB/CobQ-like glutamine amidotransferase domain VS_RS12590 PF17283 SprT-like zinc ribbon domain VS_RS12590 PF10263 SprT-like family VS_RS12595 PF04231 Endonuclease I VS_RS12605 PF04452 RNA methyltransferase VS_RS12610 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VS_RS12610 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VS_RS12615 PF02622 Uncharacterized ACR, COG1678 VS_RS12620 PF03652 Holliday junction resolvase VS_RS12625 PF00437 Type II/IV secretion system protein VS_RS12630 PF00437 Type II/IV secretion system protein VS_RS12635 PF01168 Alanine racemase, N-terminal domain VS_RS12640 PF14748 Pyrroline-5-carboxylate reductase dimerisation VS_RS12640 PF03807 NADP oxidoreductase coenzyme F420-dependent VS_RS12645 PF02325 YGGT family VS_RS12650 PF02594 Uncharacterised ACR, YggU family COG1872 VS_RS12660 PF01725 Ham1 family VS_RS12665 PF04055 Radical SAM superfamily VS_RS12665 PF06969 HemN C-terminal domain VS_RS12670 PF04960 Glutaminase VS_RS12675 PF02390 Putative methyltransferase VS_RS12680 PF00633 Helix-hairpin-helix motif VS_RS12680 PF00730 HhH-GPD superfamily base excision DNA repair protein VS_RS12680 PF14815 NUDIX domain VS_RS12685 PF04362 Bacterial Fe(2+) trafficking VS_RS12690 PF01464 Transglycosylase SLT domain VS_RS12690 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VS_RS12730 PF17200 Single Cache domain 2 VS_RS12730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS12730 PF00672 HAMP domain VS_RS12795 PF00072 Response regulator receiver domain VS_RS12815 PF03739 Lipopolysaccharide export system permease LptF/LptG VS_RS12820 PF03739 Lipopolysaccharide export system permease LptF/LptG VS_RS12830 PF04364 DNA polymerase III chi subunit, HolC VS_RS12835 PF00133 tRNA synthetases class I (I, L, M and V) VS_RS12835 PF10458 Valyl tRNA synthetase tRNA binding arm VS_RS12835 PF08264 Anticodon-binding domain of tRNA VS_RS12845 PF00583 Acetyltransferase (GNAT) family VS_RS12855 PF06877 Regulator of ribonuclease activity B VS_RS12870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VS_RS12870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VS_RS12875 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VS_RS12875 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VS_RS12880 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VS_RS12880 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VS_RS12885 PF01042 Endoribonuclease L-PSP VS_RS12890 PF01553 Acyltransferase VS_RS12895 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VS_RS12900 PF01722 BolA-like protein VS_RS12910 PF05494 MlaC protein VS_RS12915 PF02470 MlaD protein VS_RS12920 PF02405 Permease MlaE VS_RS12925 PF00005 ABC transporter VS_RS12930 PF01699 Sodium/calcium exchanger protein VS_RS12935 PF01380 SIS domain VS_RS12935 PF00571 CBS domain VS_RS12950 PF03968 OstA-like protein VS_RS12955 PF00005 ABC transporter VS_RS12955 PF12399 Branched-chain amino acid ATP-binding cassette transporter VS_RS12960 PF04552 Sigma-54, DNA binding domain VS_RS12960 PF04963 Sigma-54 factor, core binding domain VS_RS12960 PF00309 Sigma-54 factor, Activator interacting domain (AID) VS_RS12965 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VS_RS12970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VS_RS12975 PF03668 P-loop ATPase protein family VS_RS12980 PF00381 PTS HPr component phosphorylation site VS_RS12985 PF03448 MgtE intracellular N domain VS_RS12985 PF01769 Divalent cation transporter VS_RS12985 PF00571 CBS domain VS_RS12990 PF01523 Putative modulator of DNA gyrase VS_RS12995 PF04751 Protein of unknown function (DUF615) VS_RS13000 PF00005 ABC transporter VS_RS13005 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS13015 PF02441 Flavoprotein VS_RS13020 PF01225 Mur ligase family, catalytic domain VS_RS13020 PF08245 Mur ligase middle domain VS_RS13020 PF02875 Mur ligase family, glutamate ligase domain VS_RS13025 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VS_RS13035 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VS_RS13040 PF04357 TamB, inner membrane protein subunit of TAM complex VS_RS13045 PF17243 POTRA domain TamA domain 1 VS_RS13045 PF07244 Surface antigen variable number repeat VS_RS13045 PF01103 Surface antigen VS_RS13050 PF01625 Peptide methionine sulfoxide reductase VS_RS13055 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VS_RS13065 PF00005 ABC transporter VS_RS13090 PF03600 Citrate transporter VS_RS13090 PF02080 TrkA-C domain VS_RS13095 PF00009 Elongation factor Tu GTP binding domain VS_RS13100 PF01507 Phosphoadenosine phosphosulfate reductase family VS_RS13105 PF02872 5'-nucleotidase, C-terminal domain VS_RS13105 PF00149 Calcineurin-like phosphoesterase VS_RS13150 PF13673 Acetyltransferase (GNAT) domain VS_RS13160 PF08525 Opacity-associated protein A N-terminal motif VS_RS13160 PF04225 Opacity-associated protein A LysM-like domain VS_RS13165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_RS13165 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VS_RS13175 PF01196 Ribosomal protein L17 VS_RS13180 PF01000 RNA polymerase Rpb3/RpoA insert domain VS_RS13180 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VS_RS13180 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VS_RS13185 PF00163 Ribosomal protein S4/S9 N-terminal domain VS_RS13185 PF01479 S4 domain VS_RS13190 PF00411 Ribosomal protein S11 VS_RS13195 PF00416 Ribosomal protein S13/S18 VS_RS13200 PF00444 Ribosomal protein L36 VS_RS13205 PF00344 SecY translocase VS_RS13210 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VS_RS13215 PF00327 Ribosomal protein L30p/L7e VS_RS13220 PF00333 Ribosomal protein S5, N-terminal domain VS_RS13220 PF03719 Ribosomal protein S5, C-terminal domain VS_RS13225 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VS_RS13230 PF00347 Ribosomal protein L6 VS_RS13235 PF00410 Ribosomal protein S8 VS_RS13240 PF00253 Ribosomal protein S14p/S29e VS_RS13245 PF00673 ribosomal L5P family C-terminus VS_RS13245 PF00281 Ribosomal protein L5 VS_RS13250 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VS_RS13250 PF00467 KOW motif VS_RS13260 PF00366 Ribosomal protein S17 VS_RS13265 PF00831 Ribosomal L29 protein VS_RS13270 PF00252 Ribosomal protein L16p/L10e VS_RS13275 PF07650 KH domain VS_RS13275 PF00189 Ribosomal protein S3, C-terminal domain VS_RS13280 PF00237 Ribosomal protein L22p/L17e VS_RS13285 PF00203 Ribosomal protein S19 VS_RS13290 PF00181 Ribosomal Proteins L2, RNA binding domain VS_RS13290 PF03947 Ribosomal Proteins L2, C-terminal domain VS_RS13295 PF00276 Ribosomal protein L23 VS_RS13300 PF00573 Ribosomal protein L4/L1 family VS_RS13305 PF00297 Ribosomal protein L3 VS_RS13310 PF00338 Ribosomal protein S10p/S20e VS_RS13315 PF03144 Elongation factor Tu domain 2 VS_RS13315 PF00009 Elongation factor Tu GTP binding domain VS_RS13315 PF03143 Elongation factor Tu C-terminal domain VS_RS13320 PF00679 Elongation factor G C-terminus VS_RS13320 PF14492 Elongation Factor G, domain II VS_RS13320 PF03144 Elongation factor Tu domain 2 VS_RS13320 PF03764 Elongation factor G, domain IV VS_RS13320 PF00009 Elongation factor Tu GTP binding domain VS_RS13325 PF00177 Ribosomal protein S7p/S5e VS_RS13330 PF00164 Ribosomal protein S12/S23 VS_RS13340 PF02635 DsrE/DsrF-like family VS_RS13345 PF02635 DsrE/DsrF-like family VS_RS13350 PF13309 HTH domain VS_RS13350 PF08348 YheO-like PAS domain VS_RS13355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_RS13355 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VS_RS13365 PF04102 SlyX VS_RS13370 PF01112 Asparaginase VS_RS13375 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VS_RS13385 PF02254 TrkA-N domain VS_RS13385 PF00999 Sodium/hydrogen exchanger family VS_RS13390 PF02525 Flavodoxin-like fold VS_RS13395 PF12848 ABC transporter VS_RS13395 PF00005 ABC transporter VS_RS13405 PF00561 alpha/beta hydrolase fold VS_RS13410 PF06794 Uncharacterised protein family (UPF0270) VS_RS13415 PF00485 Phosphoribulokinase / Uridine kinase family VS_RS13420 PF13545 Crp-like helix-turn-helix domain VS_RS13420 PF00027 Cyclic nucleotide-binding domain VS_RS13430 PF13276 HTH-like domain VS_RS13430 PF13333 Integrase core domain VS_RS13430 PF00665 Integrase core domain VS_RS13440 PF00171 Aldehyde dehydrogenase family VS_RS13445 PF04958 Arginine N-succinyltransferase beta subunit VS_RS13450 PF00202 Aminotransferase class-III VS_RS13455 PF00117 Glutamine amidotransferase class-I VS_RS13460 PF00990 Diguanylate cyclase, GGDEF domain VS_RS13460 PF03707 Bacterial signalling protein N terminal repeat VS_RS13460 PF00563 EAL domain VS_RS13470 PF00579 tRNA synthetases class I (W and Y) VS_RS13475 PF13419 Haloacid dehalogenase-like hydrolase VS_RS13480 PF00834 Ribulose-phosphate 3 epimerase family VS_RS13485 PF02086 D12 class N6 adenine-specific DNA methyltransferase VS_RS13495 PF01761 3-dehydroquinate synthase VS_RS13500 PF01202 Shikimate kinase VS_RS13505 PF07660 Secretin and TonB N terminus short domain VS_RS13505 PF03958 Bacterial type II/III secretion system short domain VS_RS13505 PF00263 Bacterial type II and III secretion system protein VS_RS13505 PF11741 AMIN domain VS_RS13530 PF00905 Penicillin binding protein transpeptidase domain VS_RS13530 PF00912 Transglycosylase VS_RS13530 PF17092 Penicillin-binding protein OB-like domain VS_RS13535 PF03466 LysR substrate binding domain VS_RS13535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS13540 PF00462 Glutaredoxin VS_RS13540 PF08534 Redoxin VS_RS13545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_RS13545 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_RS13550 PF01042 Endoribonuclease L-PSP VS_RS13560 PF14698 Argininosuccinate lyase C-terminal VS_RS13560 PF00583 Acetyltransferase (GNAT) family VS_RS13560 PF00206 Lyase VS_RS13565 PF00764 Arginosuccinate synthase VS_RS13570 PF00696 Amino acid kinase family VS_RS13575 PF01118 Semialdehyde dehydrogenase, NAD binding domain VS_RS13575 PF02774 Semialdehyde dehydrogenase, dimerisation domain VS_RS13580 PF01546 Peptidase family M20/M25/M40 VS_RS13580 PF07687 Peptidase dimerisation domain VS_RS13585 PF00311 Phosphoenolpyruvate carboxylase VS_RS13595 PF02219 Methylenetetrahydrofolate reductase VS_RS13600 PF00742 Homoserine dehydrogenase VS_RS13600 PF03447 Homoserine dehydrogenase, NAD binding domain VS_RS13600 PF00696 Amino acid kinase family VS_RS13605 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_RS13610 PF01340 Met Apo-repressor, MetJ VS_RS13615 PF03949 Malic enzyme, NAD binding domain VS_RS13615 PF00390 Malic enzyme, N-terminal domain VS_RS13620 PF01197 Ribosomal protein L31 VS_RS13625 PF18074 Primosomal protein N C-terminal domain VS_RS13625 PF17764 3′ DNA-binding domain (3′BD) VS_RS13625 PF00271 Helicase conserved C-terminal domain VS_RS13625 PF00270 DEAD/DEAH box helicase VS_RS13625 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VS_RS13630 PF00356 Bacterial regulatory proteins, lacI family VS_RS13640 PF00227 Proteasome subunit VS_RS13645 PF00004 ATPase family associated with various cellular activities (AAA) VS_RS13645 PF07724 AAA domain (Cdc48 subfamily) VS_RS13650 PF01040 UbiA prenyltransferase family VS_RS13655 PF03737 Aldolase/RraA VS_RS13660 PF06005 Cell division protein ZapB VS_RS13665 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VS_RS13680 PF05656 Protein of unknown function (DUF805) VS_RS13690 PF00121 Triosephosphate isomerase VS_RS13695 PF00365 Phosphofructokinase VS_RS13700 PF01545 Cation efflux family VS_RS13700 PF16916 Dimerisation domain of Zinc Transporter VS_RS13710 PF00072 Response regulator receiver domain VS_RS13710 PF00486 Transcriptional regulatory protein, C terminal VS_RS13715 PF00512 His Kinase A (phospho-acceptor) domain VS_RS13715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS13715 PF00672 HAMP domain VS_RS13715 PF16527 Two-component sensor protein CpxA, periplasmic domain VS_RS13720 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VS_RS13720 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VS_RS13725 PF00588 SpoU rRNA Methylase family VS_RS13730 PF04186 FxsA cytoplasmic membrane protein VS_RS13735 PF10415 Fumarase C C-terminus VS_RS13735 PF00206 Lyase VS_RS13740 PF03605 Anaerobic c4-dicarboxylate membrane transporter VS_RS13745 PF03606 C4-dicarboxylate anaerobic carrier VS_RS13760 PF00696 Amino acid kinase family VS_RS13765 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VS_RS13765 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VS_RS13770 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VS_RS13770 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VS_RS13775 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VS_RS13775 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VS_RS13780 PF01316 Arginine repressor, DNA binding domain VS_RS13780 PF02863 Arginine repressor, C-terminal domain VS_RS13785 PF11412 Disulphide bond corrector protein DsbC VS_RS13785 PF02683 Cytochrome C biogenesis protein transmembrane region VS_RS13790 PF00072 Response regulator receiver domain VS_RS13790 PF00196 Bacterial regulatory proteins, luxR family VS_RS13795 PF00999 Sodium/hydrogen exchanger family VS_RS13795 PF03471 Transporter associated domain VS_RS13795 PF02080 TrkA-C domain VS_RS13805 PF00474 Sodium:solute symporter family VS_RS13815 PF10415 Fumarase C C-terminus VS_RS13815 PF00206 Lyase VS_RS13820 PF00072 Response regulator receiver domain VS_RS13820 PF01627 Hpt domain VS_RS13820 PF00512 His Kinase A (phospho-acceptor) domain VS_RS13820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS13820 PF00672 HAMP domain VS_RS13825 PF12832 MFS_1 like family VS_RS13840 PF00501 AMP-binding enzyme VS_RS13840 PF16177 Acetyl-coenzyme A synthetase N-terminus VS_RS13840 PF13193 AMP-binding enzyme C-terminal domain VS_RS13845 PF01220 Dehydroquinase class II VS_RS13850 PF00364 Biotin-requiring enzyme VS_RS13855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VS_RS13855 PF02785 Biotin carboxylase C-terminal domain VS_RS13855 PF00289 Biotin carboxylase, N-terminal domain VS_RS13865 PF01207 Dihydrouridine synthase (Dus) VS_RS13870 PF02954 Bacterial regulatory protein, Fis family VS_RS13875 PF08448 PAS fold VS_RS13875 PF00990 Diguanylate cyclase, GGDEF domain VS_RS13880 PF13411 MerR HTH family regulatory protein VS_RS13885 PF02142 MGS-like domain VS_RS13885 PF01808 AICARFT/IMPCHase bienzyme VS_RS13890 PF02843 Phosphoribosylglycinamide synthetase, C domain VS_RS13890 PF02844 Phosphoribosylglycinamide synthetase, N domain VS_RS13890 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VS_RS13900 PF00216 Bacterial DNA-binding protein VS_RS13905 PF01595 Cyclin M transmembrane N-terminal domain VS_RS13905 PF00571 CBS domain VS_RS13910 PF04222 Protein of unknown function (DUF416) VS_RS13920 PF03167 Uracil DNA glycosylase superfamily VS_RS13925 PF01208 Uroporphyrinogen decarboxylase (URO-D) VS_RS13930 PF09297 NADH pyrophosphatase zinc ribbon domain VS_RS13930 PF00293 NUDIX domain VS_RS13935 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VS_RS13940 PF04997 RNA polymerase Rpb1, domain 1 VS_RS13940 PF00623 RNA polymerase Rpb1, domain 2 VS_RS13940 PF04983 RNA polymerase Rpb1, domain 3 VS_RS13940 PF05000 RNA polymerase Rpb1, domain 4 VS_RS13940 PF04998 RNA polymerase Rpb1, domain 5 VS_RS13945 PF04563 RNA polymerase beta subunit VS_RS13945 PF04565 RNA polymerase Rpb2, domain 3 VS_RS13945 PF04561 RNA polymerase Rpb2, domain 2 VS_RS13945 PF10385 RNA polymerase beta subunit external 1 domain VS_RS13945 PF04560 RNA polymerase Rpb2, domain 7 VS_RS13945 PF00562 RNA polymerase Rpb2, domain 6 VS_RS13950 PF16320 Ribosomal protein L7/L12 dimerisation domain VS_RS13950 PF00542 Ribosomal protein L7/L12 C-terminal domain VS_RS13955 PF00466 Ribosomal protein L10 VS_RS13960 PF00687 Ribosomal protein L1p/L10e family VS_RS13965 PF00298 Ribosomal protein L11, RNA binding domain VS_RS13965 PF03946 Ribosomal protein L11, N-terminal domain VS_RS13970 PF00467 KOW motif VS_RS13970 PF02357 Transcription termination factor nusG VS_RS13980 PF00009 Elongation factor Tu GTP binding domain VS_RS13980 PF03144 Elongation factor Tu domain 2 VS_RS13980 PF03143 Elongation factor Tu C-terminal domain VS_RS14005 PF00485 Phosphoribulokinase / Uridine kinase family VS_RS14010 PF08279 HTH domain VS_RS14010 PF03099 Biotin/lipoate A/B protein ligase family VS_RS14010 PF02237 Biotin protein ligase C terminal domain VS_RS14015 PF01565 FAD binding domain VS_RS14015 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VS_RS14025 PF13091 PLD-like domain VS_RS14070 PF01177 Asp/Glu/Hydantoin racemase VS_RS14080 PF00593 TonB dependent receptor VS_RS14080 PF07715 TonB-dependent Receptor Plug Domain VS_RS14085 PF05958 tRNA (Uracil-5-)-methyltransferase VS_RS14095 PF00440 Bacterial regulatory proteins, tetR family VS_RS14100 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_RS14100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VS_RS14105 PF01554 MatE VS_RS14110 PF04072 Leucine carboxyl methyltransferase VS_RS14115 PF00717 Peptidase S24-like VS_RS14115 PF01726 LexA DNA binding domain VS_RS14120 PF01219 Prokaryotic diacylglycerol kinase VS_RS14125 PF01553 Acyltransferase VS_RS14130 PF13333 Integrase core domain VS_RS14130 PF13276 HTH-like domain VS_RS14130 PF00665 Integrase core domain VS_RS14140 PF01040 UbiA prenyltransferase family VS_RS14145 PF04345 Chorismate lyase VS_RS14150 PF03748 Flagellar basal body-associated protein FliL VS_RS14155 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VS_RS14155 PF01694 Rhomboid family VS_RS14160 PF00581 Rhodanese-like domain VS_RS14165 PF00140 Sigma-70 factor, region 1.2 VS_RS14165 PF04545 Sigma-70, region 4 VS_RS14165 PF04542 Sigma-70 region 2 VS_RS14170 PF18075 FtsX extracellular domain VS_RS14175 PF00005 ABC transporter VS_RS14180 PF02881 SRP54-type protein, helical bundle domain VS_RS14180 PF00448 SRP54-type protein, GTPase domain VS_RS14180 PF02881 SRP54-type protein, helical bundle domain VS_RS14180 PF00448 SRP54-type protein, GTPase domain VS_RS14195 PF01914 MarC family integral membrane protein VS_RS14235 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VS_RS14235 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VS_RS14240 PF01022 Bacterial regulatory protein, arsR family VS_RS14245 PF08668 HDOD domain VS_RS14245 PF00563 EAL domain VS_RS14250 PF01810 LysE type translocator VS_RS14255 PF12146 Serine aminopeptidase, S33 VS_RS14275 PF03942 DTW domain VS_RS14280 PF00563 EAL domain VS_RS14280 PF00990 Diguanylate cyclase, GGDEF domain VS_RS14280 PF10442 FIST C domain VS_RS14280 PF08495 FIST N domain VS_RS14285 PF00990 Diguanylate cyclase, GGDEF domain VS_RS14285 PF10442 FIST C domain VS_RS14285 PF08495 FIST N domain VS_RS14285 PF00563 EAL domain VS_RS14290 PF13419 Haloacid dehalogenase-like hydrolase VS_RS14295 PF02899 Phage integrase, N-terminal SAM-like domain VS_RS14295 PF00589 Phage integrase family VS_RS14305 PF01678 Diaminopimelate epimerase VS_RS14310 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VS_RS14310 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VS_RS14320 PF01491 Frataxin-like domain VS_RS14325 PF12633 Adenylate cyclase NT domain VS_RS14325 PF01295 Adenylate cyclase, class-I VS_RS14330 PF03900 Porphobilinogen deaminase, C-terminal domain VS_RS14330 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VS_RS14335 PF02602 Uroporphyrinogen-III synthase HemD VS_RS14340 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VS_RS14345 PF07219 HemY protein N-terminus VS_RS14370 PF00175 Oxidoreductase NAD-binding domain VS_RS14380 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VS_RS14390 PF07498 Rho termination factor, N-terminal domain VS_RS14390 PF07497 Rho termination factor, RNA-binding domain VS_RS14390 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_RS14395 PF00085 Thioredoxin VS_RS14400 PF00270 DEAD/DEAH box helicase VS_RS14400 PF00271 Helicase conserved C-terminal domain VS_RS14405 PF02541 Ppx/GppA phosphatase family VS_RS14410 PF02592 Putative vitamin uptake transporter VS_RS14420 PF00271 Helicase conserved C-terminal domain VS_RS14420 PF00570 HRDC domain VS_RS14420 PF16124 RecQ zinc-binding VS_RS14420 PF00270 DEAD/DEAH box helicase VS_RS14420 PF09382 RQC domain VS_RS14425 PF00892 EamA-like transporter family VS_RS14430 PF12833 Helix-turn-helix domain VS_RS14430 PF02311 AraC-like ligand binding domain VS_RS14435 PF01810 LysE type translocator VS_RS14445 PF08534 Redoxin VS_RS14450 PF13361 UvrD-like helicase C-terminal domain VS_RS14450 PF00580 UvrD/REP helicase N-terminal domain VS_RS14460 PF05114 Protein of unknown function (DUF692) VS_RS14480 PF07690 Major Facilitator Superfamily VS_RS14485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS14485 PF03466 LysR substrate binding domain VS_RS14490 PF01321 Creatinase/Prolidase N-terminal domain VS_RS14490 PF00557 Metallopeptidase family M24 VS_RS14490 PF00557 Metallopeptidase family M24 VS_RS14490 PF01321 Creatinase/Prolidase N-terminal domain VS_RS14495 PF06968 Biotin and Thiamin Synthesis associated domain VS_RS14495 PF04055 Radical SAM superfamily VS_RS14500 PF05690 Thiazole biosynthesis protein ThiG VS_RS14505 PF02597 ThiS family VS_RS14510 PF00899 ThiF family VS_RS14515 PF02581 Thiamine monophosphate synthase VS_RS14520 PF13667 ThiC-associated domain VS_RS14520 PF01964 Radical SAM ThiC family VS_RS14525 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VS_RS14530 PF00394 Multicopper oxidase VS_RS14530 PF07731 Multicopper oxidase VS_RS14530 PF07732 Multicopper oxidase VS_RS14575 PF00132 Bacterial transferase hexapeptide (six repeats) VS_RS14585 PF08501 Shikimate dehydrogenase substrate binding domain VS_RS14585 PF01488 Shikimate / quinate 5-dehydrogenase VS_RS14585 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VS_RS14590 PF01218 Coproporphyrinogen III oxidase VS_RS14595 PF01300 Telomere recombination VS_RS14600 PF00731 AIR carboxylase VS_RS14605 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VS_RS14605 PF02222 ATP-grasp domain VS_RS14610 PF01396 Topoisomerase DNA binding C4 zinc finger VS_RS14615 PF04361 Protein of unknown function (DUF494) VS_RS14620 PF02481 DNA recombination-mediator protein A VS_RS14620 PF17782 DprA winged helix domain VS_RS14630 PF01327 Polypeptide deformylase VS_RS14635 PF00551 Formyl transferase VS_RS14635 PF02911 Formyl transferase, C-terminal domain VS_RS14640 PF01189 16S rRNA methyltransferase RsmB/F VS_RS14640 PF01029 NusB family VS_RS14645 PF02254 TrkA-N domain VS_RS14645 PF02080 TrkA-C domain VS_RS14650 PF02386 Cation transport protein VS_RS14660 PF03006 Haemolysin-III related VS_RS14665 PF07070 SpoOM protein VS_RS14670 PF06288 Protein of unknown function (DUF1040) VS_RS14675 PF12801 4Fe-4S binding domain VS_RS14675 PF13746 4Fe-4S dicluster domain VS_RS14675 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VS_RS14680 PF01636 Phosphotransferase enzyme family VS_RS14685 PF01323 DSBA-like thioredoxin domain VS_RS14695 PF01078 Magnesium chelatase, subunit ChlI VS_RS14695 PF13335 Magnesium chelatase, subunit ChlI C-terminal VS_RS14700 PF00205 Thiamine pyrophosphate enzyme, central domain VS_RS14700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VS_RS14700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VS_RS14710 PF01063 Amino-transferase class IV VS_RS14715 PF00920 Dehydratase family VS_RS14720 PF00585 C-terminal regulatory domain of Threonine dehydratase VS_RS14720 PF00291 Pyridoxal-phosphate dependent enzyme VS_RS14725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VS_RS14725 PF03466 LysR substrate binding domain VS_RS14730 PF07690 Major Facilitator Superfamily VS_RS14735 PF12804 MobA-like NTP transferase domain VS_RS14735 PF00132 Bacterial transferase hexapeptide (six repeats) VS_RS14740 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VS_RS14740 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VS_RS14745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_RS14745 PF02874 ATP synthase alpha/beta family, beta-barrel domain VS_RS14750 PF00231 ATP synthase VS_RS14755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VS_RS14755 PF00306 ATP synthase alpha/beta chain, C terminal domain VS_RS14755 PF02874 ATP synthase alpha/beta family, beta-barrel domain VS_RS14760 PF00213 ATP synthase delta (OSCP) subunit VS_RS14765 PF00430 ATP synthase B/B' CF(0) VS_RS14770 PF00137 ATP synthase subunit C VS_RS14775 PF00119 ATP synthase A chain VS_RS14780 PF03899 ATP synthase I chain VS_RS14785 PF17762 HTH domain found in ParB protein VS_RS14785 PF02195 ParB-like nuclease domain VS_RS14790 PF13614 AAA domain VS_RS14795 PF02527 rRNA small subunit methyltransferase G VS_RS14800 PF01134 Glucose inhibited division protein A VS_RS14800 PF13932 GidA associated domain VS_RS14920 PF02092 Glycyl-tRNA synthetase beta subunit VS_RS14920 PF05746 DALR anticodon binding domain VS_RS14955 PF00378 Enoyl-CoA hydratase/isomerase VS_RS14955 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VS_RS14955 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VS_RS15050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VS_RS15050 PF00005 ABC transporter VS_RS15205 PF00490 Delta-aminolevulinic acid dehydratase VS_RS15290 PF00989 PAS fold VS_RS15290 PF00512 His Kinase A (phospho-acceptor) domain VS_RS15290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS15330 PF03631 Virulence factor BrkB VS_RS15450 PF00575 S1 RNA binding domain VS_RS15450 PF17674 HHH domain VS_RS15450 PF09371 Tex-like protein N-terminal domain VS_RS15450 PF16921 Tex protein YqgF-like domain VS_RS15545 PF02779 Transketolase, pyrimidine binding domain VS_RS15545 PF00456 Transketolase, thiamine diphosphate binding domain VS_RS15545 PF02780 Transketolase, C-terminal domain VS_RS15825 PF00672 HAMP domain VS_RS15825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VS_RS15825 PF02743 Cache domain VS_RS16235 PF13502 AsmA-like C-terminal region VS_RS16235 PF13116 Protein of unknown function VS_RS16315 PF00056 lactate/malate dehydrogenase, NAD binding domain VS_RS16315 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VS_RS16355 PF09312 SurA N-terminal domain VS_RS16355 PF00639 PPIC-type PPIASE domain VS_RS16385 PF00330 Aconitase family (aconitate hydratase) VS_RS16495 PF01053 Cys/Met metabolism PLP-dependent enzyme VS_RS16550 PF13401 AAA domain VS_RS16550 PF01471 Putative peptidoglycan binding domain VS_RS16585 PF01928 CYTH domain VS_RS16610 PF08335 GlnD PII-uridylyltransferase VS_RS16610 PF03710 Glutamate-ammonia ligase adenylyltransferase VS_RS16775 PF08245 Mur ligase middle domain VS_RS16775 PF01225 Mur ligase family, catalytic domain VS_RS16775 PF02875 Mur ligase family, glutamate ligase domain VS_RS16805 PF07516 SecA Wing and Scaffold domain VS_RS16805 PF07517 SecA DEAD-like domain VS_RS16805 PF01043 SecA preprotein cross-linking domain VS_RS16805 PF02810 SEC-C motif VS_RS16845 PF01925 Sulfite exporter TauE/SafE VS_RS16915 PF00310 Glutamine amidotransferases class-II VS_RS16915 PF04898 Glutamate synthase central domain VS_RS16915 PF01645 Conserved region in glutamate synthase VS_RS16915 PF01493 GXGXG motif VS_RS16940 PF00512 His Kinase A (phospho-acceptor) domain VS_RS16940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS16940 PF18415 Histidine kinase receptor ArcB trans-membrane domain VS_RS16940 PF01627 Hpt domain VS_RS16940 PF00072 Response regulator receiver domain VS_RS16940 PF00989 PAS fold VS_RS17040 PF05525 Branched-chain amino acid transport protein VS_RS17170 PF00133 tRNA synthetases class I (I, L, M and V) VS_RS17170 PF06827 Zinc finger found in FPG and IleRS VS_RS17170 PF08264 Anticodon-binding domain of tRNA VS_RS17415 PF01702 Queuine tRNA-ribosyltransferase VS_RS17525 PF01411 tRNA synthetases class II (A) VS_RS17525 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VS_RS17525 PF02272 DHHA1 domain VS_RS17545 PF00571 CBS domain VS_RS17545 PF00478 IMP dehydrogenase / GMP reductase domain VS_RS17640 PF01513 ATP-NAD kinase VS_RS17775 PF17946 RecC C-terminal domain VS_RS17935 PF02424 ApbE family VS_RS18025 PF08264 Anticodon-binding domain of tRNA VS_RS18025 PF13603 Leucyl-tRNA synthetase, Domain 2 VS_RS18025 PF00133 tRNA synthetases class I (I, L, M and V) VS_RS18140 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VS_RS18140 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VS_RS18140 PF01488 Shikimate / quinate 5-dehydrogenase VS_RS18230 PF00749 tRNA synthetases class I (E and Q), catalytic domain VS_RS18630 PF05193 Peptidase M16 inactive domain VS_RS18630 PF16187 Middle or third domain of peptidase_M16 VS_RS18630 PF00675 Insulinase (Peptidase family M16) VS_RS18865 PF07992 Pyridine nucleotide-disulphide oxidoreductase VS_RS18865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VS_RS19225 PF00485 Phosphoribulokinase / Uridine kinase family VS_RS19350 PF00209 Sodium:neurotransmitter symporter family VS_RS19405 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VS_RS19405 PF14579 Helix-hairpin-helix motif VS_RS19405 PF07733 Bacterial DNA polymerase III alpha NTPase domain VS_RS19405 PF02811 PHP domain VS_RS19405 PF01336 OB-fold nucleic acid binding domain VS_RS19410 PF14579 Helix-hairpin-helix motif VS_RS19410 PF01336 OB-fold nucleic acid binding domain VS_RS19410 PF02811 PHP domain VS_RS19410 PF07733 Bacterial DNA polymerase III alpha NTPase domain VS_RS19410 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VS_RS19420 PF14579 Helix-hairpin-helix motif VS_RS19420 PF01336 OB-fold nucleic acid binding domain VS_RS19420 PF07733 Bacterial DNA polymerase III alpha NTPase domain VS_RS19420 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VS_RS19420 PF02811 PHP domain VS_RS19450 PF04293 SpoVR like protein VS_RS19530 PF00326 Prolyl oligopeptidase family VS_RS19530 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VS_RS19825 PF08497 Radical SAM N-terminal VS_RS19825 PF04055 Radical SAM superfamily VS_RS19825 PF11842 Domain of unknown function (DUF3362) VS_RS19995 PF01810 LysE type translocator VS_RS20255 PF02824 TGS domain VS_RS20255 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VS_RS20255 PF03129 Anticodon binding domain VS_RS20255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VS_RS20280 PF12848 ABC transporter VS_RS20280 PF00005 ABC transporter VS_RS20475 PF00474 Sodium:solute symporter family VS_RS20775 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VS_RS20775 PF00072 Response regulator receiver domain VS_RS20775 PF01627 Hpt domain VS_RS20775 PF00512 His Kinase A (phospho-acceptor) domain VS_RS20775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS20775 PF00672 HAMP domain VS_RS21075 PF04851 Type III restriction enzyme, res subunit VS_RS21075 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) VS_RS21075 PF00271 Helicase conserved C-terminal domain VS_RS21075 PF08463 EcoEI R protein C-terminal VS_RS21100 PF01420 Type I restriction modification DNA specificity domain VS_RS21270 PF00528 Binding-protein-dependent transport system inner membrane component VS_RS21330 PF13185 GAF domain VS_RS21350 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VS_RS21350 PF01433 Peptidase family M1 domain VS_RS21350 PF11940 Domain of unknown function (DUF3458) Ig-like fold VS_RS21375 PF05088 Bacterial NAD-glutamate dehydrogenase VS_RS21405 PF01170 Putative RNA methylase family UPF0020 VS_RS21405 PF10672 S-adenosylmethionine-dependent methyltransferase VS_RS21405 PF02926 THUMP domain VS_RS21440 PF05362 Lon protease (S16) C-terminal proteolytic domain VS_RS21440 PF13654 AAA domain VS_RS21585 PF00582 Universal stress protein family VS_RS21670 PF01568 Molydopterin dinucleotide binding domain VS_RS21670 PF00384 Molybdopterin oxidoreductase VS_RS21670 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VS_RS21715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VS_RS21715 PF00512 His Kinase A (phospho-acceptor) domain VS_RS21715 PF00989 PAS fold VS_RS21810 PF01554 MatE VS_RS21930 PF12102 Domain of unknown function (DUF3578) VS_RS21930 PF07728 AAA domain (dynein-related subfamily) VS_RS21985 PF02887 Pyruvate kinase, alpha/beta domain VS_RS21985 PF00224 Pyruvate kinase, barrel domain