locus-tag class description VV93_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain VV93_RS00010 PF02767 DNA polymerase III beta subunit, central domain VV93_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain VV93_RS00015 PF02463 RecF/RecN/SMC N terminal domain VV93_RS00020 PF01751 Toprim domain VV93_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS00020 PF18053 DNA gyrase B subunit insert domain VV93_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus VV93_RS00020 PF00204 DNA gyrase B VV93_RS00025 PF00011 Hsp20/alpha crystallin family VV93_RS00030 PF03707 Bacterial signalling protein N terminal repeat VV93_RS00030 PF00563 EAL domain VV93_RS00030 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS00035 PF00155 Aminotransferase class I and II VV93_RS00045 PF05746 DALR anticodon binding domain VV93_RS00045 PF02092 Glycyl-tRNA synthetase beta subunit VV93_RS00050 PF02091 Glycyl-tRNA synthetase alpha subunit VV93_RS00055 PF01169 Uncharacterized protein family UPF0016 VV93_RS00065 PF01206 Sulfurtransferase TusA VV93_RS00075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS00075 PF03466 LysR substrate binding domain VV93_RS00080 PF00107 Zinc-binding dehydrogenase VV93_RS00080 PF08240 Alcohol dehydrogenase GroES-like domain VV93_RS00085 PF00108 Thiolase, N-terminal domain VV93_RS00085 PF02803 Thiolase, C-terminal domain VV93_RS00090 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VV93_RS00090 PF00378 Enoyl-CoA hydratase/isomerase VV93_RS00090 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VV93_RS00095 PF01205 Uncharacterized protein family UPF0029 VV93_RS00095 PF09186 Domain of unknown function (DUF1949) VV93_RS00100 PF02386 Cation transport protein VV93_RS00105 PF12724 Flavodoxin domain VV93_RS00140 PF13358 DDE superfamily endonuclease VV93_RS00150 PF13358 DDE superfamily endonuclease VV93_RS00170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS00170 PF03466 LysR substrate binding domain VV93_RS00175 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VV93_RS00175 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VV93_RS00180 PF04380 Membrane fusogenic activity VV93_RS00185 PF00873 AcrB/AcrD/AcrF family VV93_RS00190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_RS00195 PF00440 Bacterial regulatory proteins, tetR family VV93_RS00200 PF13361 UvrD-like helicase C-terminal domain VV93_RS00200 PF00580 UvrD/REP helicase N-terminal domain VV93_RS00205 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VV93_RS00235 PF00005 ABC transporter VV93_RS00235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_RS00240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_RS00245 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS00250 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_RS00250 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS00285 PF03793 PASTA domain VV93_RS00285 PF00069 Protein kinase domain VV93_RS00295 PF00072 Response regulator receiver domain VV93_RS00300 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family VV93_RS00300 PF00356 Bacterial regulatory proteins, lacI family VV93_RS00305 PF00920 Dehydratase family VV93_RS00310 PF01202 Shikimate kinase VV93_RS00315 PF02447 GntP family permease VV93_RS00320 PF01081 KDPG and KHG aldolase VV93_RS00340 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_RS00340 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV93_RS00345 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VV93_RS00350 PF01432 Peptidase family M3 VV93_RS00355 PF01037 Lrp/AsnC ligand binding domain VV93_RS00360 PF00563 EAL domain VV93_RS00360 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS00360 PF08448 PAS fold VV93_RS00365 PF04445 Putative SAM-dependent methyltransferase VV93_RS00375 PF00892 EamA-like transporter family VV93_RS00380 PF00582 Universal stress protein family VV93_RS00385 PF00210 Ferritin-like domain VV93_RS00390 PF10625 Universal stress protein B (UspB) VV93_RS00405 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase VV93_RS00410 PF02602 Uroporphyrinogen-III synthase HemD VV93_RS00415 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VV93_RS00415 PF03900 Porphobilinogen deaminase, C-terminal domain VV93_RS00420 PF12633 Adenylate cyclase NT domain VV93_RS00420 PF01295 Adenylate cyclase, class-I VV93_RS00425 PF01491 Frataxin-like domain VV93_RS00435 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VV93_RS00435 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VV93_RS00440 PF01678 Diaminopimelate epimerase VV93_RS00450 PF02899 Phage integrase, N-terminal SAM-like domain VV93_RS00450 PF00589 Phage integrase family VV93_RS00455 PF13419 Haloacid dehalogenase-like hydrolase VV93_RS00460 PF00563 EAL domain VV93_RS00460 PF08495 FIST N domain VV93_RS00460 PF10442 FIST C domain VV93_RS00460 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS00465 PF03942 DTW domain VV93_RS00485 PF12146 Serine aminopeptidase, S33 VV93_RS00490 PF01810 LysE type translocator VV93_RS00495 PF00563 EAL domain VV93_RS00495 PF08668 HDOD domain VV93_RS00500 PF01022 Bacterial regulatory protein, arsR family VV93_RS00505 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VV93_RS00505 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV93_RS00545 PF01914 MarC family integral membrane protein VV93_RS00560 PF00448 SRP54-type protein, GTPase domain VV93_RS00560 PF02881 SRP54-type protein, helical bundle domain VV93_RS00565 PF00005 ABC transporter VV93_RS00570 PF18075 FtsX extracellular domain VV93_RS00575 PF04542 Sigma-70 region 2 VV93_RS00575 PF04545 Sigma-70, region 4 VV93_RS00575 PF00140 Sigma-70 factor, region 1.2 VV93_RS00580 PF00581 Rhodanese-like domain VV93_RS00585 PF01694 Rhomboid family VV93_RS00585 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease VV93_RS00590 PF03748 Flagellar basal body-associated protein FliL VV93_RS00595 PF04345 Chorismate lyase VV93_RS00600 PF01040 UbiA prenyltransferase family VV93_RS00605 PF01553 Acyltransferase VV93_RS00610 PF00717 Peptidase S24-like VV93_RS00610 PF01726 LexA DNA binding domain VV93_RS00620 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_RS00620 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV93_RS00625 PF00440 Bacterial regulatory proteins, tetR family VV93_RS00635 PF05958 tRNA (Uracil-5-)-methyltransferase VV93_RS00665 PF13411 MerR HTH family regulatory protein VV93_RS00685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_RS00685 PF00529 HlyD membrane-fusion protein of T1SS VV93_RS00705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS00705 PF00072 Response regulator receiver domain VV93_RS00705 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS00705 PF09308 LuxQ, periplasmic VV93_RS00755 PF13737 Transposase DDE domain VV93_RS00765 PF16123 Hydroxyacylglutathione hydrolase C-terminus VV93_RS00765 PF00753 Metallo-beta-lactamase superfamily VV93_RS00780 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_RS00790 PF00465 Iron-containing alcohol dehydrogenase VV93_RS00795 PF02368 Bacterial Ig-like domain (group 2) VV93_RS00795 PF11999 Protein of unknown function (DUF3494) VV93_RS00805 PF13737 Transposase DDE domain VV93_RS00815 PF10544 T5orf172 domain VV93_RS00830 PF00593 TonB dependent receptor VV93_RS00830 PF07715 TonB-dependent Receptor Plug Domain VV93_RS00840 PF01177 Asp/Glu/Hydantoin racemase VV93_RS00875 PF13358 DDE superfamily endonuclease VV93_RS00895 PF02646 RmuC family VV93_RS00900 PF01209 ubiE/COQ5 methyltransferase family VV93_RS00905 PF02036 SCP-2 sterol transfer family VV93_RS00910 PF03109 ABC1 family VV93_RS00915 PF02416 mttA/Hcf106 family VV93_RS00920 PF02416 mttA/Hcf106 family VV93_RS00925 PF00902 Sec-independent protein translocase protein (TatC) VV93_RS00930 PF01026 TatD related DNase VV93_RS00935 PF00490 Delta-aminolevulinic acid dehydratase VV93_RS00940 PF01367 5'-3' exonuclease, C-terminal SAM fold VV93_RS00940 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VV93_RS00940 PF00476 DNA polymerase family A VV93_RS00940 PF01612 3'-5' exonuclease VV93_RS00945 PF01926 50S ribosome-binding GTPase VV93_RS00950 PF00034 Cytochrome c VV93_RS00960 PF04220 Der GTPase activator (YihI) VV93_RS00965 PF10675 Protein of unknown function (DUF2489) VV93_RS00970 PF04055 Radical SAM superfamily VV93_RS00970 PF06969 HemN C-terminal domain VV93_RS00975 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS00975 PF03707 Bacterial signalling protein N terminal repeat VV93_RS00975 PF13188 PAS domain VV93_RS00975 PF00563 EAL domain VV93_RS00980 PF00072 Response regulator receiver domain VV93_RS00980 PF00158 Sigma-54 interaction domain VV93_RS00980 PF02954 Bacterial regulatory protein, Fis family VV93_RS00985 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS00985 PF00989 PAS fold VV93_RS00985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS00995 PF03951 Glutamine synthetase, beta-Grasp domain VV93_RS00995 PF00120 Glutamine synthetase, catalytic domain VV93_RS01000 PF03144 Elongation factor Tu domain 2 VV93_RS01000 PF00009 Elongation factor Tu GTP binding domain VV93_RS01000 PF00679 Elongation factor G C-terminus VV93_RS01015 PF03631 Virulence factor BrkB VV93_RS01020 PF02580 D-Tyr-tRNA(Tyr) deacylase VV93_RS01025 PF09500 Putative thioesterase (yiiD_Cterm) VV93_RS01025 PF00583 Acetyltransferase (GNAT) family VV93_RS01035 PF01293 Phosphoenolpyruvate carboxykinase VV93_RS01040 PF01430 Hsp33 protein VV93_RS01045 PF01479 S4 domain VV93_RS01050 PF11356 Type II secretion system protein C VV93_RS01055 PF00263 Bacterial type II and III secretion system protein VV93_RS01055 PF03958 Bacterial type II/III secretion system short domain VV93_RS01060 PF00437 Type II/IV secretion system protein VV93_RS01065 PF00482 Type II secretion system (T2SS), protein F VV93_RS01070 PF08334 Type II secretion system (T2SS), protein G VV93_RS01070 PF07963 Prokaryotic N-terminal methylation motif VV93_RS01075 PF12019 Type II transport protein GspH VV93_RS01080 PF07963 Prokaryotic N-terminal methylation motif VV93_RS01080 PF02501 Type II secretion system (T2SS), protein I VV93_RS01085 PF11612 Type II secretion system (T2SS), protein J VV93_RS01085 PF07963 Prokaryotic N-terminal methylation motif VV93_RS01090 PF03934 Type II secretion system (T2SS), protein K VV93_RS01095 PF05134 Type II secretion system (T2SS), protein L VV93_RS01095 PF12693 GspL periplasmic domain VV93_RS01100 PF04612 Type II secretion system (T2SS), protein M VV93_RS01105 PF01203 Type II secretion system (T2SS), protein N VV93_RS01110 PF00459 Inositol monophosphatase family VV93_RS01115 PF00293 NUDIX domain VV93_RS01120 PF01106 NifU-like domain VV93_RS01120 PF01521 Iron-sulphur cluster biosynthesis VV93_RS01130 PF00561 alpha/beta hydrolase fold VV93_RS01140 PF09371 Tex-like protein N-terminal domain VV93_RS01140 PF17674 HHH domain VV93_RS01140 PF00575 S1 RNA binding domain VV93_RS01140 PF16921 Tex protein YqgF-like domain VV93_RS01145 PF03449 Transcription elongation factor, N-terminal VV93_RS01145 PF01272 Transcription elongation factor, GreA/GreB, C-term VV93_RS01150 PF00072 Response regulator receiver domain VV93_RS01150 PF00486 Transcriptional regulatory protein, C terminal VV93_RS01155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS01155 PF00672 HAMP domain VV93_RS01155 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS01160 PF00860 Permease family VV93_RS01165 PF00270 DEAD/DEAH box helicase VV93_RS01165 PF00271 Helicase conserved C-terminal domain VV93_RS01165 PF17191 RecG wedge domain VV93_RS01170 PF00588 SpoU rRNA Methylase family VV93_RS01170 PF12105 SpoU, rRNA methylase, C-terminal VV93_RS01175 PF13291 ACT domain VV93_RS01175 PF02824 TGS domain VV93_RS01175 PF04607 Region found in RelA / SpoT proteins VV93_RS01180 PF01192 RNA polymerase Rpb6 VV93_RS01185 PF00625 Guanylate kinase VV93_RS01200 PF02472 Biopolymer transport protein ExbD/TolR VV93_RS01205 PF01618 MotA/TolQ/ExbB proton channel family VV93_RS01210 PF01618 MotA/TolQ/ExbB proton channel family VV93_RS01220 PF00593 TonB dependent receptor VV93_RS01220 PF07715 TonB-dependent Receptor Plug Domain VV93_RS01225 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS01230 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_RS01230 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS01235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_RS01240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_RS01240 PF00005 ABC transporter VV93_RS01245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_RS01245 PF00005 ABC transporter VV93_RS01270 PF00892 EamA-like transporter family VV93_RS01290 PF00529 HlyD membrane-fusion protein of T1SS VV93_RS01290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_RS01345 PF01555 DNA methylase VV93_RS01365 PF18272 single-stranded DNA binding TraI N-terminal subdomain VV93_RS01365 PF07057 DNA helicase TraI VV93_RS01365 PF18340 DNA relaxase TraI 2B/2B-like domain VV93_RS01365 PF08751 TrwC relaxase VV93_RS01420 PF03755 YicC-like family, N-terminal region VV93_RS01420 PF08340 Domain of unknown function (DUF1732) VV93_RS01425 PF01138 3' exoribonuclease family, domain 1 VV93_RS01425 PF03725 3' exoribonuclease family, domain 2 VV93_RS01430 PF00156 Phosphoribosyl transferase domain VV93_RS01435 PF03279 Bacterial lipid A biosynthesis acyltransferase VV93_RS01440 PF00440 Bacterial regulatory proteins, tetR family VV93_RS01445 PF02441 Flavoprotein VV93_RS01445 PF04127 DNA / pantothenate metabolism flavoprotein VV93_RS01450 PF17200 Single Cache domain 2 VV93_RS01450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS01450 PF00672 HAMP domain VV93_RS01455 PF04002 RadC-like JAB domain VV93_RS01460 PF00830 Ribosomal L28 family VV93_RS01465 PF00471 Ribosomal protein L33 VV93_RS01475 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VV93_RS01475 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VV93_RS01475 PF06827 Zinc finger found in FPG and IleRS VV93_RS01485 PF01467 Cytidylyltransferase-like VV93_RS01490 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VV93_RS01495 PF00535 Glycosyl transferase family 2 VV93_RS01500 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VV93_RS01505 PF01219 Prokaryotic diacylglycerol kinase VV93_RS01515 PF00884 Sulfatase VV93_RS01515 PF11893 Domain of unknown function (DUF3413) VV93_RS01520 PF16363 GDP-mannose 4,6 dehydratase VV93_RS01525 PF00483 Nucleotidyl transferase VV93_RS01530 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VV93_RS01535 PF00793 DAHP synthetase I family VV93_RS01545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VV93_RS01545 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VV93_RS01545 PF02142 MGS-like domain VV93_RS01555 PF00535 Glycosyl transferase family 2 VV93_RS01565 PF02719 Polysaccharide biosynthesis protein VV93_RS01570 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VV93_RS01575 PF02350 UDP-N-acetylglucosamine 2-epimerase VV93_RS01580 PF03102 NeuB family VV93_RS01580 PF08666 SAF domain VV93_RS01590 PF00483 Nucleotidyl transferase VV93_RS01600 PF02348 Cytidylyltransferase VV93_RS01620 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VV93_RS01625 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VV93_RS01630 PF03279 Bacterial lipid A biosynthesis acyltransferase VV93_RS01635 PF01370 NAD dependent epimerase/dehydratase family VV93_RS01640 PF06082 Exopolysaccharide biosynthesis protein YbjH VV93_RS01650 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF VV93_RS01670 PF02563 Polysaccharide biosynthesis/export protein VV93_RS01670 PF10531 SLBB domain VV93_RS01670 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VV93_RS01680 PF01451 Low molecular weight phosphotyrosine protein phosphatase VV93_RS01685 PF02706 Chain length determinant protein VV93_RS01685 PF13807 G-rich domain on putative tyrosine kinase VV93_RS01685 PF13614 AAA domain VV93_RS01690 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VV93_RS01690 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VV93_RS01690 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VV93_RS01695 PF01370 NAD dependent epimerase/dehydratase family VV93_RS01705 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_RS01720 PF08485 Polysaccharide biosynthesis protein C-terminal VV93_RS01720 PF02719 Polysaccharide biosynthesis protein VV93_RS01725 PF04321 RmlD substrate binding domain VV93_RS01730 PF02350 UDP-N-acetylglucosamine 2-epimerase VV93_RS01735 PF13477 Glycosyl transferase 4-like VV93_RS01735 PF00534 Glycosyl transferases group 1 VV93_RS01740 PF02397 Bacterial sugar transferase VV93_RS01745 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_RS01745 PF14602 Hexapeptide repeat of succinyl-transferase VV93_RS01745 PF17836 PglD N-terminal domain VV93_RS01750 PF01575 MaoC like domain VV93_RS01755 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VV93_RS01760 PF02719 Polysaccharide biosynthesis protein VV93_RS01765 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VV93_RS01765 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VV93_RS01765 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VV93_RS01785 PF10996 Beta-Casp domain VV93_RS01785 PF00753 Metallo-beta-lactamase superfamily VV93_RS01785 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain VV93_RS01790 PF13402 Peptidase M60, enhancin and enhancin-like VV93_RS01790 PF13322 Domain of unknown function (DUF4092) VV93_RS01790 PF17291 N-terminal domain of M60-like peptidases VV93_RS01795 PF00338 Ribosomal protein S10p/S20e VV93_RS01800 PF00297 Ribosomal protein L3 VV93_RS01805 PF00573 Ribosomal protein L4/L1 family VV93_RS01810 PF00276 Ribosomal protein L23 VV93_RS01815 PF00181 Ribosomal Proteins L2, RNA binding domain VV93_RS01815 PF03947 Ribosomal Proteins L2, C-terminal domain VV93_RS01820 PF00203 Ribosomal protein S19 VV93_RS01825 PF00237 Ribosomal protein L22p/L17e VV93_RS01830 PF00189 Ribosomal protein S3, C-terminal domain VV93_RS01830 PF07650 KH domain VV93_RS01835 PF00252 Ribosomal protein L16p/L10e VV93_RS01840 PF00831 Ribosomal L29 protein VV93_RS01845 PF00366 Ribosomal protein S17 VV93_RS01850 PF00238 Ribosomal protein L14p/L23e VV93_RS01855 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VV93_RS01855 PF00467 KOW motif VV93_RS01860 PF00673 ribosomal L5P family C-terminus VV93_RS01860 PF00281 Ribosomal protein L5 VV93_RS01865 PF00253 Ribosomal protein S14p/S29e VV93_RS01870 PF00410 Ribosomal protein S8 VV93_RS01875 PF00347 Ribosomal protein L6 VV93_RS01880 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VV93_RS01885 PF03719 Ribosomal protein S5, C-terminal domain VV93_RS01885 PF00333 Ribosomal protein S5, N-terminal domain VV93_RS01890 PF00327 Ribosomal protein L30p/L7e VV93_RS01895 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VV93_RS01900 PF00344 SecY translocase VV93_RS01905 PF00444 Ribosomal protein L36 VV93_RS01910 PF00416 Ribosomal protein S13/S18 VV93_RS01915 PF00411 Ribosomal protein S11 VV93_RS01920 PF00163 Ribosomal protein S4/S9 N-terminal domain VV93_RS01920 PF01479 S4 domain VV93_RS01925 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VV93_RS01925 PF01000 RNA polymerase Rpb3/RpoA insert domain VV93_RS01925 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VV93_RS01930 PF01196 Ribosomal protein L17 VV93_RS01940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV93_RS01940 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VV93_RS01945 PF08525 Opacity-associated protein A N-terminal motif VV93_RS01945 PF04225 Opacity-associated protein A LysM-like domain VV93_RS01955 PF13673 Acetyltransferase (GNAT) domain VV93_RS01965 PF00149 Calcineurin-like phosphoesterase VV93_RS01965 PF02872 5'-nucleotidase, C-terminal domain VV93_RS01970 PF14824 Sirohaem biosynthesis protein central VV93_RS01970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV93_RS01970 PF10414 Sirohaem synthase dimerisation region VV93_RS01975 PF01507 Phosphoadenosine phosphosulfate reductase family VV93_RS01980 PF00009 Elongation factor Tu GTP binding domain VV93_RS01985 PF03600 Citrate transporter VV93_RS01985 PF02080 TrkA-C domain VV93_RS02010 PF12704 MacB-like periplasmic core domain VV93_RS02010 PF00005 ABC transporter VV93_RS02010 PF02687 FtsX-like permease family VV93_RS02025 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) VV93_RS02035 PF01625 Peptide methionine sulfoxide reductase VV93_RS02040 PF17243 POTRA domain TamA domain 1 VV93_RS02040 PF07244 Surface antigen variable number repeat VV93_RS02040 PF01103 Surface antigen VV93_RS02045 PF04357 TamB, inner membrane protein subunit of TAM complex VV93_RS02050 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like VV93_RS02060 PF00719 Inorganic pyrophosphatase VV93_RS02065 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain VV93_RS02070 PF01225 Mur ligase family, catalytic domain VV93_RS02070 PF02875 Mur ligase family, glutamate ligase domain VV93_RS02070 PF08245 Mur ligase middle domain VV93_RS02075 PF02441 Flavoprotein VV93_RS02085 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS02090 PF00005 ABC transporter VV93_RS02095 PF04751 Protein of unknown function (DUF615) VV93_RS02100 PF01523 Putative modulator of DNA gyrase VV93_RS02105 PF13358 DDE superfamily endonuclease VV93_RS02115 PF01523 Putative modulator of DNA gyrase VV93_RS02120 PF00571 CBS domain VV93_RS02120 PF03448 MgtE intracellular N domain VV93_RS02120 PF01769 Divalent cation transporter VV93_RS02125 PF00381 PTS HPr component phosphorylation site VV93_RS02130 PF03668 P-loop ATPase protein family VV93_RS02135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV93_RS02140 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VV93_RS02145 PF04552 Sigma-54, DNA binding domain VV93_RS02145 PF04963 Sigma-54 factor, core binding domain VV93_RS02145 PF00309 Sigma-54 factor, Activator interacting domain (AID) VV93_RS02150 PF00005 ABC transporter VV93_RS02150 PF12399 Branched-chain amino acid ATP-binding cassette transporter VV93_RS02155 PF03968 OstA-like protein VV93_RS02170 PF01380 SIS domain VV93_RS02170 PF00571 CBS domain VV93_RS02175 PF01699 Sodium/calcium exchanger protein VV93_RS02180 PF00005 ABC transporter VV93_RS02185 PF02405 Permease MlaE VV93_RS02190 PF02470 MlaD protein VV93_RS02195 PF05494 MlaC protein VV93_RS02205 PF01722 BolA-like protein VV93_RS02210 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VV93_RS02215 PF01553 Acyltransferase VV93_RS02220 PF00582 Universal stress protein family VV93_RS02230 PF16868 NMT1-like family VV93_RS02235 PF02863 Arginine repressor, C-terminal domain VV93_RS02235 PF01316 Arginine repressor, DNA binding domain VV93_RS02240 PF00056 lactate/malate dehydrogenase, NAD binding domain VV93_RS02240 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VV93_RS02245 PF00348 Polyprenyl synthetase VV93_RS02250 PF00829 Ribosomal prokaryotic L21 protein VV93_RS02255 PF01016 Ribosomal L27 protein VV93_RS02260 PF01018 GTP1/OBG VV93_RS02260 PF01926 50S ribosome-binding GTPase VV93_RS02265 PF06738 Putative threonine/serine exporter VV93_RS02270 PF12821 Threonine/Serine exporter, ThrE VV93_RS02275 PF00186 Dihydrofolate reductase VV93_RS02280 PF00149 Calcineurin-like phosphoesterase VV93_RS02285 PF04379 ApaG domain VV93_RS02290 PF00398 Ribosomal RNA adenine dimethylase VV93_RS02295 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VV93_RS02300 PF00639 PPIC-type PPIASE domain VV93_RS02300 PF09312 SurA N-terminal domain VV93_RS02305 PF04453 LPS transport system D VV93_RS02305 PF03968 OstA-like protein VV93_RS02310 PF00226 DnaJ domain VV93_RS02310 PF05099 Tellurite resistance protein TerB VV93_RS02320 PF00694 Aconitase C-terminal domain VV93_RS02325 PF00330 Aconitase family (aconitate hydratase) VV93_RS02330 PF00180 Isocitrate/isopropylmalate dehydrogenase VV93_RS02335 PF00682 HMGL-like VV93_RS02335 PF08502 LeuA allosteric (dimerisation) domain VV93_RS02345 PF01569 PAP2 superfamily VV93_RS02355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS02355 PF03466 LysR substrate binding domain VV93_RS02360 PF00501 AMP-binding enzyme VV93_RS02365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VV93_RS02365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VV93_RS02365 PF00205 Thiamine pyrophosphate enzyme, central domain VV93_RS02370 PF10369 Small subunit of acetolactate synthase VV93_RS02375 PF07694 5TMR of 5TMR-LYT VV93_RS02375 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS02390 PF02887 Pyruvate kinase, alpha/beta domain VV93_RS02390 PF00224 Pyruvate kinase, barrel domain VV93_RS02395 PF00455 DeoR C terminal sensor domain VV93_RS02395 PF08220 DeoR-like helix-turn-helix domain VV93_RS02400 PF01380 SIS domain VV93_RS02405 PF05068 Mannitol repressor VV93_RS02415 PF13358 DDE superfamily endonuclease VV93_RS02420 PF08125 Mannitol dehydrogenase C-terminal domain VV93_RS02420 PF01232 Mannitol dehydrogenase Rossmann domain VV93_RS02425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VV93_RS02425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 VV93_RS02425 PF02378 Phosphotransferase system, EIIC VV93_RS02430 PF03480 Bacterial extracellular solute-binding protein, family 7 VV93_RS02455 PF01867 CRISPR associated protein Cas1 VV93_RS02460 PF18019 HD domain VV93_RS02465 PF09611 CRISPR-associated protein (Cas_Csy1) VV93_RS02470 PF09614 CRISPR-associated protein (Cas_Csy2) VV93_RS02475 PF09615 CRISPR-associated protein (Cas_Csy3) VV93_RS02500 PF04002 RadC-like JAB domain VV93_RS02515 PF06803 Protein of unknown function (DUF1232) VV93_RS02560 PF13356 Arm DNA-binding domain VV93_RS02560 PF00589 Phage integrase family VV93_RS02570 PF04539 Sigma-70 region 3 VV93_RS02570 PF04545 Sigma-70, region 4 VV93_RS02570 PF04546 Sigma-70, non-essential region VV93_RS02570 PF00140 Sigma-70 factor, region 1.2 VV93_RS02570 PF04542 Sigma-70 region 2 VV93_RS02570 PF03979 Sigma-70 factor, region 1.1 VV93_RS02575 PF10410 DnaB-helicase binding domain of primase VV93_RS02575 PF01807 CHC2 zinc finger VV93_RS02575 PF08275 DNA primase catalytic core, N-terminal domain VV93_RS02575 PF08278 DNA primase DnaG DnaB-binding VV93_RS02580 PF09424 Yqey-like protein VV93_RS02585 PF01165 Ribosomal protein S21 VV93_RS02590 PF00814 Glycoprotease family VV93_RS02595 PF12697 Alpha/beta hydrolase family VV93_RS02600 PF02660 Glycerol-3-phosphate acyltransferase VV93_RS02605 PF02152 Dihydroneopterin aldolase VV93_RS02610 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VV93_RS02615 PF02673 Bacitracin resistance protein BacA VV93_RS02620 PF01966 HD domain VV93_RS02620 PF01743 Poly A polymerase head domain VV93_RS02620 PF12627 Probable RNA and SrmB- binding site of polymerase A VV93_RS02625 PF01471 Putative peptidoglycan binding domain VV93_RS02625 PF13401 AAA domain VV93_RS02630 PF08239 Bacterial SH3 domain VV93_RS02635 PF01384 Phosphate transporter family VV93_RS02640 PF01865 Protein of unknown function DUF47 VV93_RS02645 PF01928 CYTH domain VV93_RS02650 PF07885 Ion channel VV93_RS02655 PF00672 HAMP domain VV93_RS02655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS02655 PF12729 Four helix bundle sensory module for signal transduction VV93_RS02660 PF08335 GlnD PII-uridylyltransferase VV93_RS02660 PF03710 Glutamate-ammonia ligase adenylyltransferase VV93_RS02665 PF00294 pfkB family carbohydrate kinase VV93_RS02665 PF01467 Cytidylyltransferase-like VV93_RS02670 PF02321 Outer membrane efflux protein VV93_RS02675 PF00293 NUDIX domain VV93_RS02680 PF06853 Protein of unknown function (DUF1249) VV93_RS02685 PF00149 Calcineurin-like phosphoesterase VV93_RS02690 PF05728 Uncharacterised protein family (UPF0227) VV93_RS02695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS02695 PF00986 DNA gyrase B subunit, carboxyl terminus VV93_RS02695 PF00204 DNA gyrase B VV93_RS02695 PF01751 Toprim domain VV93_RS02700 PF00521 DNA gyrase/topoisomerase IV, subunit A VV93_RS02700 PF03989 DNA gyrase C-terminal domain, beta-propeller VV93_RS02705 PF13180 PDZ domain VV93_RS02710 PF00595 PDZ domain VV93_RS02715 PF06295 Protein of unknown function (DUF1043) VV93_RS02720 PF03969 AFG1-like ATPase VV93_RS02725 PF00572 Ribosomal protein L13 VV93_RS02730 PF00380 Ribosomal protein S9/S16 VV93_RS02735 PF00355 Rieske [2Fe-2S] domain VV93_RS02735 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VV93_RS02740 PF00032 Cytochrome b(C-terminal)/b6/petD VV93_RS02740 PF00033 Cytochrome b/b6/petB VV93_RS02745 PF02167 Cytochrome C1 family VV93_RS02750 PF02798 Glutathione S-transferase, N-terminal domain VV93_RS02750 PF00043 Glutathione S-transferase, C-terminal domain VV93_RS02755 PF04386 Stringent starvation protein B VV93_RS02760 PF04972 BON domain VV93_RS02765 PF13580 SIS domain VV93_RS02770 PF02021 Uncharacterised protein family UPF0102 VV93_RS02775 PF04348 LppC putative lipoprotein VV93_RS02780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV93_RS02785 PF01795 MraW methylase family VV93_RS02790 PF04999 Cell division protein FtsL VV93_RS02795 PF00905 Penicillin binding protein transpeptidase domain VV93_RS02795 PF03717 Penicillin-binding Protein dimerisation domain VV93_RS02800 PF08245 Mur ligase middle domain VV93_RS02800 PF02875 Mur ligase family, glutamate ligase domain VV93_RS02800 PF01225 Mur ligase family, catalytic domain VV93_RS02805 PF08245 Mur ligase middle domain VV93_RS02805 PF01225 Mur ligase family, catalytic domain VV93_RS02805 PF02875 Mur ligase family, glutamate ligase domain VV93_RS02810 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 VV93_RS02810 PF00953 Glycosyl transferase family 4 VV93_RS02815 PF08245 Mur ligase middle domain VV93_RS02815 PF02875 Mur ligase family, glutamate ligase domain VV93_RS02820 PF01098 Cell cycle protein VV93_RS02825 PF04101 Glycosyltransferase family 28 C-terminal domain VV93_RS02825 PF03033 Glycosyltransferase family 28 N-terminal domain VV93_RS02830 PF01225 Mur ligase family, catalytic domain VV93_RS02830 PF08245 Mur ligase middle domain VV93_RS02830 PF02875 Mur ligase family, glutamate ligase domain VV93_RS02835 PF03799 Cell division protein FtsQ VV93_RS02835 PF08478 POTRA domain, FtsQ-type VV93_RS02840 PF02491 SHS2 domain inserted in FTSA VV93_RS02845 PF12327 FtsZ family, C-terminal domain VV93_RS02845 PF00091 Tubulin/FtsZ family, GTPase domain VV93_RS02850 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VV93_RS02860 PF02810 SEC-C motif VV93_RS02860 PF07516 SecA Wing and Scaffold domain VV93_RS02860 PF01043 SecA preprotein cross-linking domain VV93_RS02860 PF07517 SecA DEAD-like domain VV93_RS02865 PF00293 NUDIX domain VV93_RS02870 PF05173 Dihydrodipicolinate reductase, C-terminus VV93_RS02870 PF01113 Dihydrodipicolinate reductase, N-terminus VV93_RS02875 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VV93_RS02875 PF00117 Glutamine amidotransferase class-I VV93_RS02880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VV93_RS02880 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VV93_RS02880 PF02142 MGS-like domain VV93_RS02890 PF01925 Sulfite exporter TauE/SafE VV93_RS02895 PF03466 LysR substrate binding domain VV93_RS02895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS02900 PF03458 UPF0126 domain VV93_RS02905 PF01497 Periplasmic binding protein VV93_RS02910 PF03186 CobD/Cbib protein VV93_RS02910 PF17113 Regulatory signalling modulator protein AmpE VV93_RS02915 PF01048 Phosphorylase superfamily VV93_RS02925 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VV93_RS02925 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_RS02930 PF01645 Conserved region in glutamate synthase VV93_RS02930 PF01493 GXGXG motif VV93_RS02930 PF04898 Glutamate synthase central domain VV93_RS02930 PF00310 Glutamine amidotransferases class-II VV93_RS02935 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VV93_RS02935 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_RS02940 PF04898 Glutamate synthase central domain VV93_RS02940 PF00310 Glutamine amidotransferases class-II VV93_RS02940 PF01493 GXGXG motif VV93_RS02940 PF01645 Conserved region in glutamate synthase VV93_RS02945 PF04055 Radical SAM superfamily VV93_RS02945 PF16199 Radical_SAM C-terminal domain VV93_RS02950 PF00563 EAL domain VV93_RS02950 PF01590 GAF domain VV93_RS02950 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS02950 PF00360 Phytochrome region VV93_RS02955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS02955 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS02955 PF18415 Histidine kinase receptor ArcB trans-membrane domain VV93_RS02955 PF01627 Hpt domain VV93_RS02955 PF00989 PAS fold VV93_RS02955 PF00072 Response regulator receiver domain VV93_RS02965 PF00072 Response regulator receiver domain VV93_RS02965 PF00486 Transcriptional regulatory protein, C terminal VV93_RS02975 PF03737 Aldolase/RraA VV93_RS02985 PF01842 ACT domain VV93_RS02985 PF00696 Amino acid kinase family VV93_RS02985 PF03447 Homoserine dehydrogenase, NAD binding domain VV93_RS02985 PF00742 Homoserine dehydrogenase VV93_RS02985 PF13840 ACT domain VV93_RS02990 PF00288 GHMP kinases N terminal domain VV93_RS02990 PF08544 GHMP kinases C terminal VV93_RS02995 PF14821 Threonine synthase N terminus VV93_RS02995 PF00291 Pyridoxal-phosphate dependent enzyme VV93_RS03000 PF01228 Glycine radical VV93_RS03005 PF01261 Xylose isomerase-like TIM barrel VV93_RS03010 PF03167 Uracil DNA glycosylase superfamily VV93_RS03025 PF01235 Sodium:alanine symporter family VV93_RS03030 PF03883 Peroxide stress protein YaaA VV93_RS03035 PF00271 Helicase conserved C-terminal domain VV93_RS03035 PF00270 DEAD/DEAH box helicase VV93_RS03040 PF05175 Methyltransferase small domain VV93_RS03045 PF05525 Branched-chain amino acid transport protein VV93_RS03050 PF00258 Flavodoxin VV93_RS03055 PF02899 Phage integrase, N-terminal SAM-like domain VV93_RS03055 PF00589 Phage integrase family VV93_RS03060 PF13098 Thioredoxin-like domain VV93_RS03060 PF10411 Disulfide bond isomerase protein N-terminus VV93_RS03065 PF17768 RecJ OB domain VV93_RS03065 PF02272 DHHA1 domain VV93_RS03065 PF01368 DHH family VV93_RS03070 PF00472 RF-1 domain VV93_RS03070 PF03462 PCRF domain VV93_RS03075 PF00152 tRNA synthetases class II (D, K and N) VV93_RS03075 PF01336 OB-fold nucleic acid binding domain VV93_RS03080 PF06505 Activator of aromatic catabolism VV93_RS03080 PF02954 Bacterial regulatory protein, Fis family VV93_RS03080 PF02830 V4R domain VV93_RS03080 PF00158 Sigma-54 interaction domain VV93_RS03090 PF00248 Aldo/keto reductase family VV93_RS03100 PF02976 DNA mismatch repair enzyme MutH VV93_RS03105 PF00293 NUDIX domain VV93_RS03110 PF02896 PEP-utilising enzyme, TIM barrel domain VV93_RS03110 PF01590 GAF domain VV93_RS03110 PF05524 PEP-utilising enzyme, N-terminal VV93_RS03110 PF00391 PEP-utilising enzyme, mobile domain VV93_RS03115 PF01925 Sulfite exporter TauE/SafE VV93_RS03120 PF01790 Prolipoprotein diacylglyceryl transferase VV93_RS03125 PF00303 Thymidylate synthase VV93_RS03135 PF02690 Na+/Pi-cotransporter VV93_RS03140 PF03466 LysR substrate binding domain VV93_RS03140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS03145 PF01022 Bacterial regulatory protein, arsR family VV93_RS03150 PF01649 Ribosomal protein S20 VV93_RS03155 PF03023 Lipid II flippase MurJ VV93_RS03160 PF06574 FAD synthetase VV93_RS03160 PF01687 Riboflavin kinase VV93_RS03165 PF06827 Zinc finger found in FPG and IleRS VV93_RS03165 PF00133 tRNA synthetases class I (I, L, M and V) VV93_RS03165 PF08264 Anticodon-binding domain of tRNA VV93_RS03170 PF01252 Signal peptidase (SPase) II VV93_RS03175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV93_RS03180 PF02401 LytB protein VV93_RS03185 PF00072 Response regulator receiver domain VV93_RS03185 PF04397 LytTr DNA-binding domain VV93_RS03190 PF07694 5TMR of 5TMR-LYT VV93_RS03190 PF06580 Histidine kinase VV93_RS03195 PF02554 Carbon starvation protein CstA VV93_RS03215 PF03702 Anhydro-N-acetylmuramic acid kinase VV93_RS03220 PF00933 Glycosyl hydrolase family 3 N terminal domain VV93_RS03225 PF00793 DAHP synthetase I family VV93_RS03230 PF02153 Prephenate dehydrogenase VV93_RS03230 PF01817 Chorismate mutase type II VV93_RS03235 PF01551 Peptidase family M23 VV93_RS03235 PF04225 Opacity-associated protein A LysM-like domain VV93_RS03240 PF07238 PilZ domain VV93_RS03245 PF00005 ABC transporter VV93_RS03245 PF12848 ABC transporter VV93_RS03250 PF01464 Transglycosylase SLT domain VV93_RS03250 PF14718 Soluble lytic murein transglycosylase L domain VV93_RS03255 PF01371 Trp repressor protein VV93_RS03260 PF01931 Protein of unknown function DUF84 VV93_RS03265 PF00800 Prephenate dehydratase VV93_RS03265 PF01817 Chorismate mutase type II VV93_RS03270 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VV93_RS03275 PF13525 Outer membrane lipoprotein VV93_RS03280 PF00849 RNA pseudouridylate synthase VV93_RS03280 PF01479 S4 domain VV93_RS03285 PF02578 Multi-copper polyphenol oxidoreductase laccase VV93_RS03290 PF17871 AAA lid domain VV93_RS03290 PF02861 Clp amino terminal domain, pathogenicity island component VV93_RS03290 PF07724 AAA domain (Cdc48 subfamily) VV93_RS03290 PF10431 C-terminal, D2-small domain, of ClpB protein VV93_RS03290 PF00004 ATPase family associated with various cellular activities (AAA) VV93_RS03325 PF00589 Phage integrase family VV93_RS03325 PF13495 Phage integrase, N-terminal SAM-like domain VV93_RS03370 PF00145 C-5 cytosine-specific DNA methylase VV93_RS03380 PF03411 Penicillin-insensitive murein endopeptidase VV93_RS03385 PF00037 4Fe-4S binding domain VV93_RS03390 PF01136 Peptidase family U32 VV93_RS03390 PF16325 Peptidase family U32 C-terminal domain VV93_RS03395 PF04381 Putative exonuclease, RdgC VV93_RS03400 PF00486 Transcriptional regulatory protein, C terminal VV93_RS03400 PF00072 Response regulator receiver domain VV93_RS03405 PF11808 Phosphate regulon sensor protein PhoR VV93_RS03405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS03405 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS03405 PF00989 PAS fold VV93_RS03410 PF12849 PBP superfamily domain VV93_RS03415 PF02541 Ppx/GppA phosphatase family VV93_RS03420 PF02503 Polyphosphate kinase middle domain VV93_RS03420 PF13090 Polyphosphate kinase C-terminal domain 2 VV93_RS03420 PF13089 Polyphosphate kinase N-terminal domain VV93_RS03420 PF17941 Polyphosphate kinase C-terminal domain 1 VV93_RS03425 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS03430 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS03435 PF00005 ABC transporter VV93_RS03440 PF01895 PhoU domain VV93_RS03460 PF03466 LysR substrate binding domain VV93_RS03460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS03465 PF03976 Polyphosphate kinase 2 (PPK2) VV93_RS03470 PF03932 CutC family VV93_RS03475 PF10417 C-terminal domain of 1-Cys peroxiredoxin VV93_RS03475 PF00578 AhpC/TSA family VV93_RS03480 PF03466 LysR substrate binding domain VV93_RS03480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS03485 PF01274 Malate synthase VV93_RS03490 PF00463 Isocitrate lyase family VV93_RS03495 PF00571 CBS domain VV93_RS03505 PF02547 Queuosine biosynthesis protein VV93_RS03510 PF01702 Queuine tRNA-ribosyltransferase VV93_RS03515 PF02699 Preprotein translocase subunit VV93_RS03520 PF02355 Protein export membrane protein VV93_RS03520 PF07549 SecD/SecF GG Motif VV93_RS03520 PF13721 SecD export protein N-terminal TM region VV93_RS03525 PF07549 SecD/SecF GG Motif VV93_RS03525 PF02355 Protein export membrane protein VV93_RS03540 PF00459 Inositol monophosphatase family VV93_RS03545 PF00588 SpoU rRNA Methylase family VV93_RS03550 PF02082 Transcriptional regulator VV93_RS03555 PF00266 Aminotransferase class-V VV93_RS03560 PF01592 NifU-like N terminal domain VV93_RS03565 PF01521 Iron-sulphur cluster biosynthesis VV93_RS03570 PF07743 HSCB C-terminal oligomerisation domain VV93_RS03570 PF00226 DnaJ domain VV93_RS03575 PF00012 Hsp70 protein VV93_RS03580 PF00111 2Fe-2S iron-sulfur cluster binding domain VV93_RS03585 PF04384 Iron-sulphur cluster assembly VV93_RS03590 PF12404 Peptidase VV93_RS03590 PF00883 Cytosol aminopeptidase family, catalytic domain VV93_RS03595 PF00334 Nucleoside diphosphate kinase VV93_RS03600 PF04055 Radical SAM superfamily VV93_RS03605 PF13464 Domain of unknown function (DUF4115) VV93_RS03610 PF04551 GcpE protein VV93_RS03615 PF03129 Anticodon binding domain VV93_RS03615 PF13393 Histidyl-tRNA synthetase VV93_RS03620 PF09976 Tetratricopeptide repeat-like domain VV93_RS03625 PF13360 PQQ-like domain VV93_RS03630 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VV93_RS03630 PF01926 50S ribosome-binding GTPase VV93_RS03640 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS03640 PF13185 GAF domain VV93_RS03650 PF02601 Exonuclease VII, large subunit VV93_RS03650 PF13742 OB-fold nucleic acid binding domain VV93_RS03655 PF00478 IMP dehydrogenase / GMP reductase domain VV93_RS03655 PF00571 CBS domain VV93_RS03660 PF00958 GMP synthase C terminal domain VV93_RS03660 PF00117 Glutamine amidotransferase class-I VV93_RS03660 PF02540 NAD synthase VV93_RS03665 PF00704 Glycosyl hydrolases family 18 VV93_RS03665 PF06483 Chitinase C VV93_RS03670 PF01184 GPR1/FUN34/yaaH family VV93_RS03675 PF01235 Sodium:alanine symporter family VV93_RS03680 PF01266 FAD dependent oxidoreductase VV93_RS03685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS03685 PF03466 LysR substrate binding domain VV93_RS03690 PF07885 Ion channel VV93_RS03695 PF02028 BCCT, betaine/carnitine/choline family transporter VV93_RS03705 PF03481 Putative GTP-binding controlling metal-binding VV93_RS03705 PF01300 Telomere recombination VV93_RS03775 PF00075 RNase H VV93_RS03815 PF04002 RadC-like JAB domain VV93_RS03845 PF00589 Phage integrase family VV93_RS03845 PF13356 Arm DNA-binding domain VV93_RS03850 PF01668 SmpB protein VV93_RS03855 PF03364 Polyketide cyclase / dehydrase and lipid transport VV93_RS03860 PF03658 RnfH family Ubiquitin VV93_RS03865 PF04355 SmpA / OmlA family VV93_RS03870 PF02463 RecF/RecN/SMC N terminal domain VV93_RS03875 PF01513 ATP-NAD kinase VV93_RS03880 PF01025 GrpE VV93_RS03885 PF13358 DDE superfamily endonuclease VV93_RS03895 PF00375 Sodium:dicarboxylate symporter family VV93_RS03920 PF00012 Hsp70 protein VV93_RS03925 PF01556 DnaJ C terminal domain VV93_RS03925 PF00684 DnaJ central domain VV93_RS03925 PF00226 DnaJ domain VV93_RS03930 PF07963 Prokaryotic N-terminal methylation motif VV93_RS03930 PF00114 Pilin (bacterial filament) VV93_RS03935 PF07963 Prokaryotic N-terminal methylation motif VV93_RS03935 PF00114 Pilin (bacterial filament) VV93_RS03955 PF03806 AbgT putative transporter family VV93_RS03960 PF00756 Putative esterase VV93_RS03970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS03970 PF03466 LysR substrate binding domain VV93_RS03975 PF14437 MafB19-like deaminase VV93_RS03980 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_RS03980 PF01464 Transglycosylase SLT domain VV93_RS03985 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VV93_RS03985 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VV93_RS03985 PF02769 AIR synthase related protein, C-terminal domain VV93_RS04010 PF01546 Peptidase family M20/M25/M40 VV93_RS04010 PF07687 Peptidase dimerisation domain VV93_RS04015 PF00860 Permease family VV93_RS04020 PF00156 Phosphoribosyl transferase domain VV93_RS04025 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) VV93_RS04030 PF07417 Sigma factor-binding transcriptional regulator Crl VV93_RS04035 PF01472 PUA domain VV93_RS04035 PF00696 Amino acid kinase family VV93_RS04040 PF00171 Aldehyde dehydrogenase family VV93_RS04045 PF03477 ATP cone domain VV93_RS04050 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VV93_RS04050 PF01872 RibD C-terminal domain VV93_RS04055 PF00677 Lumazine binding domain VV93_RS04060 PF00925 GTP cyclohydrolase II VV93_RS04060 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VV93_RS04065 PF00885 6,7-dimethyl-8-ribityllumazine synthase VV93_RS04070 PF01029 NusB family VV93_RS04075 PF00586 AIR synthase related protein, N-terminal domain VV93_RS04075 PF02769 AIR synthase related protein, C-terminal domain VV93_RS04080 PF04608 Phosphatidylglycerophosphatase A VV93_RS04085 PF02779 Transketolase, pyrimidine binding domain VV93_RS04085 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VV93_RS04085 PF02780 Transketolase, C-terminal domain VV93_RS04090 PF00348 Polyprenyl synthetase VV93_RS04095 PF02609 Exonuclease VII small subunit VV93_RS04100 PF01618 MotA/TolQ/ExbB proton channel family VV93_RS04105 PF13677 Membrane MotB of proton-channel complex MotA/MotB VV93_RS04105 PF00691 OmpA family VV93_RS04110 PF02926 THUMP domain VV93_RS04110 PF02568 Thiamine biosynthesis protein (ThiI) VV93_RS04115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS04115 PF03466 LysR substrate binding domain VV93_RS04125 PF04241 Protein of unknown function (DUF423) VV93_RS04130 PF01728 FtsJ-like methyltransferase VV93_RS04130 PF18125 RlmM ferredoxin-like domain VV93_RS04135 PF01223 DNA/RNA non-specific endonuclease VV93_RS04140 PF01367 5'-3' exonuclease, C-terminal SAM fold VV93_RS04140 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VV93_RS04145 PF03641 Possible lysine decarboxylase VV93_RS04145 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VV93_RS04145 PF11892 Domain of unknown function (DUF3412) VV93_RS04150 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS04160 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VV93_RS04160 PF14489 QueF-like protein VV93_RS04165 PF07348 Syd protein (SUKH-2) VV93_RS04170 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) VV93_RS04175 PF03180 NLPA lipoprotein VV93_RS04180 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS04185 PF09383 NIL domain VV93_RS04185 PF00005 ABC transporter VV93_RS04195 PF00356 Bacterial regulatory proteins, lacI family VV93_RS04200 PF00367 phosphotransferase system, EIIB VV93_RS04200 PF02378 Phosphotransferase system, EIIC VV93_RS04205 PF00128 Alpha amylase, catalytic domain VV93_RS04205 PF16657 Maltogenic Amylase, C-terminal domain VV93_RS04215 PF00464 Serine hydroxymethyltransferase VV93_RS04225 PF04055 Radical SAM superfamily VV93_RS04225 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VV93_RS04230 PF03099 Biotin/lipoate A/B protein ligase family VV93_RS04235 PF04359 Protein of unknown function (DUF493) VV93_RS04240 PF07943 Penicillin-binding protein 5, C-terminal domain VV93_RS04240 PF00768 D-alanyl-D-alanine carboxypeptidase VV93_RS04245 PF05036 Sporulation related domain VV93_RS04245 PF03330 Lytic transglycolase VV93_RS04250 PF01098 Cell cycle protein VV93_RS04255 PF03717 Penicillin-binding Protein dimerisation domain VV93_RS04255 PF00905 Penicillin binding protein transpeptidase domain VV93_RS04260 PF02590 Predicted SPOUT methyltransferase VV93_RS04270 PF14840 Processivity clamp loader gamma complex DNA pol III C-term VV93_RS04270 PF06144 DNA polymerase III, delta subunit VV93_RS04275 PF04390 Lipopolysaccharide-assembly VV93_RS04280 PF08264 Anticodon-binding domain of tRNA VV93_RS04280 PF13603 Leucyl-tRNA synthetase, Domain 2 VV93_RS04280 PF00133 tRNA synthetases class I (I, L, M and V) VV93_RS04285 PF07295 Zinc-ribbon containing domain VV93_RS04290 PF00795 Carbon-nitrogen hydrolase VV93_RS04295 PF00571 CBS domain VV93_RS04295 PF03471 Transporter associated domain VV93_RS04300 PF02130 Uncharacterized protein family UPF0054 VV93_RS04305 PF02562 PhoH-like protein VV93_RS04310 PF00919 Uncharacterized protein family UPF0004 VV93_RS04310 PF01938 TRAM domain VV93_RS04310 PF04055 Radical SAM superfamily VV93_RS04315 PF01494 FAD binding domain VV93_RS04395 PF06071 Protein of unknown function (DUF933) VV93_RS04395 PF01926 50S ribosome-binding GTPase VV93_RS04400 PF01195 Peptidyl-tRNA hydrolase VV93_RS04405 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VV93_RS04405 PF14572 Phosphoribosyl synthetase-associated domain VV93_RS04410 PF08544 GHMP kinases C terminal VV93_RS04410 PF00288 GHMP kinases N terminal domain VV93_RS04415 PF03550 Outer membrane lipoprotein LolB VV93_RS04420 PF01488 Shikimate / quinate 5-dehydrogenase VV93_RS04420 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VV93_RS04420 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VV93_RS04425 PF03462 PCRF domain VV93_RS04425 PF00472 RF-1 domain VV93_RS04430 PF17827 PrmC N-terminal domain VV93_RS04430 PF13847 Methyltransferase domain VV93_RS04435 PF04247 Invasion gene expression up-regulator, SirB VV93_RS04440 PF13369 Transglutaminase-like superfamily VV93_RS04445 PF00793 DAHP synthetase I family VV93_RS04450 PF02872 5'-nucleotidase, C-terminal domain VV93_RS04450 PF00149 Calcineurin-like phosphoesterase VV93_RS04455 PF04073 Aminoacyl-tRNA editing domain VV93_RS04460 PF00849 RNA pseudouridylate synthase VV93_RS04460 PF01479 S4 domain VV93_RS04465 PF01713 Smr domain VV93_RS04480 PF01963 TraB family VV93_RS04485 PF00728 Glycosyl hydrolase family 20, catalytic domain VV93_RS04485 PF02838 Glycosyl hydrolase family 20, domain 2 VV93_RS04485 PF03173 Putative carbohydrate binding domain VV93_RS04485 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain VV93_RS04495 PF00403 Heavy-metal-associated domain VV93_RS04500 PF13609 Gram-negative porin VV93_RS04510 PF00749 tRNA synthetases class I (E and Q), catalytic domain VV93_RS04555 PF00072 Response regulator receiver domain VV93_RS04555 PF01584 CheW-like domain VV93_RS04560 PF03705 CheR methyltransferase, all-alpha domain VV93_RS04560 PF01739 CheR methyltransferase, SAM binding domain VV93_RS04565 PF00460 Flagella basal body rod protein VV93_RS04570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV93_RS04570 PF00460 Flagella basal body rod protein VV93_RS04575 PF13860 FlgD Ig-like domain VV93_RS04575 PF03963 Flagellar hook capping protein - N-terminal region VV93_RS04575 PF13861 FlgD Tudor-like domain VV93_RS04580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV93_RS04580 PF00460 Flagella basal body rod protein VV93_RS04580 PF07559 Flagellar basal body protein FlaE VV93_RS04585 PF00460 Flagella basal body rod protein VV93_RS04585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV93_RS04590 PF00460 Flagella basal body rod protein VV93_RS04590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV93_RS04595 PF02107 Flagellar L-ring protein VV93_RS04600 PF02119 Flagellar P-ring protein VV93_RS04605 PF10135 Rod binding protein VV93_RS04605 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VV93_RS04610 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV93_RS04610 PF07196 Flagellin hook IN motif VV93_RS04615 PF00669 Bacterial flagellin N-terminal helical region VV93_RS04620 PF00700 Bacterial flagellin C-terminal helical region VV93_RS04620 PF00669 Bacterial flagellin N-terminal helical region VV93_RS04620 PF07196 Flagellin hook IN motif VV93_RS04630 PF00700 Bacterial flagellin C-terminal helical region VV93_RS04630 PF07196 Flagellin hook IN motif VV93_RS04630 PF00669 Bacterial flagellin N-terminal helical region VV93_RS04635 PF00669 Bacterial flagellin N-terminal helical region VV93_RS04635 PF07196 Flagellin hook IN motif VV93_RS04635 PF00700 Bacterial flagellin C-terminal helical region VV93_RS04640 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VV93_RS04645 PF00391 PEP-utilising enzyme, mobile domain VV93_RS04645 PF05524 PEP-utilising enzyme, N-terminal VV93_RS04645 PF02896 PEP-utilising enzyme, TIM barrel domain VV93_RS04650 PF00381 PTS HPr component phosphorylation site VV93_RS04655 PF00291 Pyridoxal-phosphate dependent enzyme VV93_RS04665 PF04354 ZipA, C-terminal FtsZ-binding domain VV93_RS04670 PF01653 NAD-dependent DNA ligase adenylation domain VV93_RS04670 PF03120 NAD-dependent DNA ligase OB-fold domain VV93_RS04670 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VV93_RS04670 PF00533 BRCA1 C Terminus (BRCT) domain VV93_RS04670 PF12826 Helix-hairpin-helix motif VV93_RS04690 PF16200 C-terminal region of band_7 VV93_RS04690 PF01145 SPFH domain / Band 7 family VV93_RS04695 PF00085 Thioredoxin VV93_RS04700 PF00106 short chain dehydrogenase VV93_RS04705 PF01370 NAD dependent epimerase/dehydratase family VV93_RS04705 PF08338 Domain of unknown function (DUF1731) VV93_RS04710 PF07556 Protein of unknown function (DUF1538) VV93_RS04715 PF07556 Protein of unknown function (DUF1538) VV93_RS04730 PF12850 Calcineurin-like phosphoesterase superfamily domain VV93_RS04745 PF17323 Trans-membrane regulatory protein ToxS VV93_RS04750 PF00486 Transcriptional regulatory protein, C terminal VV93_RS04755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS04755 PF00183 Hsp90 protein VV93_RS04760 PF05191 Adenylate kinase, active site lid VV93_RS04765 PF00762 Ferrochelatase VV93_RS04770 PF00672 HAMP domain VV93_RS04770 PF17200 Single Cache domain 2 VV93_RS04770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS04775 PF00854 POT family VV93_RS04785 PF00733 Asparagine synthase VV93_RS04785 PF13537 Glutamine amidotransferase domain VV93_RS04790 PF00999 Sodium/hydrogen exchanger family VV93_RS04790 PF02254 TrkA-N domain VV93_RS04795 PF01047 MarR family VV93_RS04795 PF00480 ROK family VV93_RS04800 PF01979 Amidohydrolase family VV93_RS04805 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VV93_RS04805 PF02378 Phosphotransferase system, EIIC VV93_RS04805 PF00367 phosphotransferase system, EIIB VV93_RS04810 PF00749 tRNA synthetases class I (E and Q), catalytic domain VV93_RS04810 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VV93_RS04815 PF01475 Ferric uptake regulator family VV93_RS04825 PF00258 Flavodoxin VV93_RS04835 PF12697 Alpha/beta hydrolase family VV93_RS04840 PF17206 SeqA protein N-terminal domain VV93_RS04840 PF03925 SeqA protein C-terminal domain VV93_RS04845 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VV93_RS04845 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VV93_RS04845 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VV93_RS04845 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VV93_RS04850 PF13309 HTH domain VV93_RS04850 PF08348 YheO-like PAS domain VV93_RS04855 PF01042 Endoribonuclease L-PSP VV93_RS04860 PF00375 Sodium:dicarboxylate symporter family VV93_RS04865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV93_RS04865 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_RS04875 PF01784 NIF3 (NGG1p interacting factor 3) VV93_RS04880 PF00285 Citrate synthase, C-terminal domain VV93_RS04885 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VV93_RS04890 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VV93_RS04895 PF02910 Fumarate reductase flavoprotein C-term VV93_RS04895 PF00890 FAD binding domain VV93_RS04900 PF13085 2Fe-2S iron-sulfur cluster binding domain VV93_RS04905 PF16870 2-oxoglutarate dehydrogenase C-terminal VV93_RS04905 PF02779 Transketolase, pyrimidine binding domain VV93_RS04905 PF00676 Dehydrogenase E1 component VV93_RS04905 PF16078 2-oxoglutarate dehydrogenase N-terminus VV93_RS04910 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VV93_RS04910 PF00364 Biotin-requiring enzyme VV93_RS04910 PF02817 e3 binding domain VV93_RS04915 PF00549 CoA-ligase VV93_RS04915 PF08442 ATP-grasp domain VV93_RS04920 PF02629 CoA binding domain VV93_RS04920 PF00549 CoA-ligase VV93_RS04925 PF00950 ABC 3 transport family VV93_RS04930 PF00005 ABC transporter VV93_RS04935 PF01297 Zinc-uptake complex component A periplasmic VV93_RS04945 PF04023 FeoA domain VV93_RS04950 PF07664 Ferrous iron transport protein B C terminus VV93_RS04950 PF02421 Ferrous iron transport protein B VV93_RS04950 PF07670 Nucleoside recognition VV93_RS04965 PF00750 tRNA synthetases class I (R) VV93_RS04965 PF05746 DALR anticodon binding domain VV93_RS04965 PF03485 Arginyl tRNA synthetase N terminal domain VV93_RS04970 PF06185 YecM protein VV93_RS04975 PF01842 ACT domain VV93_RS04975 PF00551 Formyl transferase VV93_RS04985 PF13307 Helicase C-terminal domain VV93_RS04985 PF04851 Type III restriction enzyme, res subunit VV93_RS04990 PF00814 Glycoprotease family VV93_RS05005 PF00561 alpha/beta hydrolase fold VV93_RS05010 PF13193 AMP-binding enzyme C-terminal domain VV93_RS05010 PF00501 AMP-binding enzyme VV93_RS05015 PF01612 3'-5' exonuclease VV93_RS05015 PF00570 HRDC domain VV93_RS05020 PF03776 Septum formation topological specificity factor MinE VV93_RS05025 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VV93_RS05030 PF05209 Septum formation inhibitor MinC, N-terminal domain VV93_RS05030 PF03775 Septum formation inhibitor MinC, C-terminal domain VV93_RS05035 PF05166 YcgL domain VV93_RS05040 PF13406 Transglycosylase SLT domain VV93_RS05045 PF03466 LysR substrate binding domain VV93_RS05045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS05050 PF07662 Na+ dependent nucleoside transporter C-terminus VV93_RS05050 PF07670 Nucleoside recognition VV93_RS05050 PF01773 Na+ dependent nucleoside transporter N-terminus VV93_RS05060 PF00486 Transcriptional regulatory protein, C terminal VV93_RS05060 PF00072 Response regulator receiver domain VV93_RS05065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS05065 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS05065 PF18719 ArlS sensor domain VV93_RS05075 PF00109 Beta-ketoacyl synthase, N-terminal domain VV93_RS05075 PF02801 Beta-ketoacyl synthase, C-terminal domain VV93_RS05085 PF07977 FabA-like domain VV93_RS05090 PF02801 Beta-ketoacyl synthase, C-terminal domain VV93_RS05090 PF00109 Beta-ketoacyl synthase, N-terminal domain VV93_RS05115 PF00221 Aromatic amino acid lyase VV93_RS05120 PF00535 Glycosyl transferase family 2 VV93_RS05130 PF13193 AMP-binding enzyme C-terminal domain VV93_RS05130 PF00501 AMP-binding enzyme VV93_RS05140 PF00550 Phosphopantetheine attachment site VV93_RS05145 PF00550 Phosphopantetheine attachment site VV93_RS05170 PF04820 Tryptophan halogenase VV93_RS05180 PF02743 Cache domain VV93_RS05180 PF00672 HAMP domain VV93_RS05180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS05185 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VV93_RS05190 PF00072 Response regulator receiver domain VV93_RS05190 PF00486 Transcriptional regulatory protein, C terminal VV93_RS05195 PF00672 HAMP domain VV93_RS05195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS05195 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS05200 PF01547 Bacterial extracellular solute-binding protein VV93_RS05205 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS05210 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS05215 PF00005 ABC transporter VV93_RS05215 PF17912 MalK OB fold domain VV93_RS05215 PF03459 TOBE domain VV93_RS05220 PF03480 Bacterial extracellular solute-binding protein, family 7 VV93_RS05225 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component VV93_RS05230 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VV93_RS05240 PF00158 Sigma-54 interaction domain VV93_RS05240 PF02954 Bacterial regulatory protein, Fis family VV93_RS05240 PF00072 Response regulator receiver domain VV93_RS05245 PF02743 Cache domain VV93_RS05245 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS05245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS05250 PF05697 Bacterial trigger factor protein (TF) VV93_RS05250 PF05698 Bacterial trigger factor protein (TF) C-terminus VV93_RS05250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV93_RS05255 PF00574 Clp protease VV93_RS05260 PF07724 AAA domain (Cdc48 subfamily) VV93_RS05260 PF10431 C-terminal, D2-small domain, of ClpB protein VV93_RS05260 PF06689 ClpX C4-type zinc finger VV93_RS05265 PF00004 ATPase family associated with various cellular activities (AAA) VV93_RS05265 PF02190 ATP-dependent protease La (LON) substrate-binding domain VV93_RS05265 PF05362 Lon protease (S16) C-terminal proteolytic domain VV93_RS05270 PF00216 Bacterial DNA-binding protein VV93_RS05275 PF13145 PPIC-type PPIASE domain VV93_RS05295 PF01966 HD domain VV93_RS05295 PF13286 Phosphohydrolase-associated domain VV93_RS05305 PF00155 Aminotransferase class I and II VV93_RS05310 PF00425 chorismate binding enzyme VV93_RS05315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VV93_RS05315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VV93_RS05315 PF16582 Middle domain of thiamine pyrophosphate VV93_RS05325 PF00378 Enoyl-CoA hydratase/isomerase VV93_RS05330 PF13378 Enolase C-terminal domain-like VV93_RS05335 PF13193 AMP-binding enzyme C-terminal domain VV93_RS05335 PF00501 AMP-binding enzyme VV93_RS05345 PF03601 Conserved hypothetical protein 698 VV93_RS05350 PF07690 Major Facilitator Superfamily VV93_RS05390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_RS05390 PF00529 HlyD membrane-fusion protein of T1SS VV93_RS05395 PF00873 AcrB/AcrD/AcrF family VV93_RS05410 PF00291 Pyridoxal-phosphate dependent enzyme VV93_RS05415 PF13404 AsnC-type helix-turn-helix domain VV93_RS05415 PF01037 Lrp/AsnC ligand binding domain VV93_RS05430 PF09619 Type III secretion system lipoprotein chaperone (YscW) VV93_RS05435 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VV93_RS05445 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS05445 PF13426 PAS domain VV93_RS05445 PF00563 EAL domain VV93_RS05450 PF07969 Amidohydrolase family VV93_RS05465 PF02743 Cache domain VV93_RS05465 PF00672 HAMP domain VV93_RS05465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS05470 PF01263 Aldose 1-epimerase VV93_RS05475 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VV93_RS05475 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV93_RS05480 PF01641 SelR domain VV93_RS05490 PF07023 Protein of unknown function (DUF1315) VV93_RS05495 PF17763 Glutaminase/Asparaginase C-terminal domain VV93_RS05495 PF00710 Asparaginase, N-terminal VV93_RS05500 PF01343 Peptidase family S49 VV93_RS05505 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VV93_RS05505 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_RS05510 PF00881 Nitroreductase family VV93_RS05515 PF01751 Toprim domain VV93_RS05515 PF01131 DNA topoisomerase VV93_RS05520 PF00850 Histone deacetylase domain VV93_RS05530 PF13358 DDE superfamily endonuclease VV93_RS05545 PF00072 Response regulator receiver domain VV93_RS05545 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS05550 PF13091 PLD-like domain VV93_RS05555 PF04074 YhcH/YjgK/YiaL VV93_RS05560 PF02386 Cation transport protein VV93_RS05565 PF02080 TrkA-C domain VV93_RS05565 PF02254 TrkA-N domain VV93_RS05575 PF00884 Sulfatase VV93_RS05575 PF11893 Domain of unknown function (DUF3413) VV93_RS05580 PF07208 Protein of unknown function (DUF1414) VV93_RS05585 PF04245 37-kD nucleoid-associated bacterial protein VV93_RS05600 PF03553 Na+/H+ antiporter family VV93_RS05605 PF02774 Semialdehyde dehydrogenase, dimerisation domain VV93_RS05605 PF01118 Semialdehyde dehydrogenase, NAD binding domain VV93_RS05615 PF00027 Cyclic nucleotide-binding domain VV93_RS05615 PF00520 Ion transport protein VV93_RS05620 PF01914 MarC family integral membrane protein VV93_RS05625 PF00171 Aldehyde dehydrogenase family VV93_RS05625 PF00465 Iron-containing alcohol dehydrogenase VV93_RS05640 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VV93_RS05640 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VV93_RS05645 PF00462 Glutaredoxin VV93_RS05655 PF13726 Na+-H+ antiporter family VV93_RS05655 PF03553 Na+/H+ antiporter family VV93_RS05660 PF00929 Exonuclease VV93_RS05665 PF18393 MotY N-terminal domain VV93_RS05665 PF00691 OmpA family VV93_RS05670 PF10952 Protein of unknown function (DUF2753) VV93_RS05675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_RS05680 PF00633 Helix-hairpin-helix motif VV93_RS05680 PF10576 Iron-sulfur binding domain of endonuclease III VV93_RS05680 PF00730 HhH-GPD superfamily base excision DNA repair protein VV93_RS05685 PF02508 Rnf-Nqr subunit, membrane protein VV93_RS05690 PF04205 FMN-binding domain VV93_RS05695 PF03116 NQR2, RnfD, RnfE family VV93_RS05700 PF10531 SLBB domain VV93_RS05700 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VV93_RS05700 PF13375 RnfC Barrel sandwich hybrid domain VV93_RS05700 PF12838 4Fe-4S dicluster domain VV93_RS05705 PF04060 Putative Fe-S cluster VV93_RS05710 PF02508 Rnf-Nqr subunit, membrane protein VV93_RS05720 PF04851 Type III restriction enzyme, res subunit VV93_RS05720 PF00271 Helicase conserved C-terminal domain VV93_RS05720 PF12344 Ultra-violet resistance protein B VV93_RS05720 PF02151 UvrB/uvrC motif VV93_RS05720 PF17757 UvrB interaction domain VV93_RS05725 PF02954 Bacterial regulatory protein, Fis family VV93_RS05725 PF00072 Response regulator receiver domain VV93_RS05725 PF00158 Sigma-54 interaction domain VV93_RS05730 PF01627 Hpt domain VV93_RS05735 PF01933 Uncharacterised protein family UPF0052 VV93_RS05740 PF04055 Radical SAM superfamily VV93_RS05740 PF06463 Molybdenum Cofactor Synthesis C VV93_RS05745 PF00994 Probable molybdopterin binding domain VV93_RS05750 PF01967 MoaC family VV93_RS05755 PF02597 ThiS family VV93_RS05760 PF02391 MoaE protein VV93_RS05765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_RS05770 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS05775 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_RS05775 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS05780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_RS05780 PF00005 ABC transporter VV93_RS05785 PF00005 ABC transporter VV93_RS05785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_RS05790 PF13409 Glutathione S-transferase, N-terminal domain VV93_RS05800 PF03795 YCII-related domain VV93_RS05805 PF03061 Thioesterase superfamily VV93_RS05810 PF04279 Intracellular septation protein A VV93_RS05820 PF00375 Sodium:dicarboxylate symporter family VV93_RS05825 PF00290 Tryptophan synthase alpha chain VV93_RS05830 PF00291 Pyridoxal-phosphate dependent enzyme VV93_RS05835 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VV93_RS05835 PF00218 Indole-3-glycerol phosphate synthase VV93_RS05840 PF00591 Glycosyl transferase family, a/b domain VV93_RS05840 PF02885 Glycosyl transferase family, helical bundle domain VV93_RS05845 PF00117 Glutamine amidotransferase class-I VV93_RS05850 PF00425 chorismate binding enzyme VV93_RS05850 PF04715 Anthranilate synthase component I, N terminal region VV93_RS05855 PF08056 Tryptophan operon leader peptide VV93_RS05860 PF02811 PHP domain VV93_RS05865 PF01300 Telomere recombination VV93_RS05875 PF01479 S4 domain VV93_RS05875 PF00849 RNA pseudouridylate synthase VV93_RS05880 PF04269 Protein of unknown function, DUF440 VV93_RS05885 PF08207 Elongation factor P (EF-P) KOW-like domain VV93_RS05885 PF01132 Elongation factor P (EF-P) OB domain VV93_RS05885 PF09285 Elongation factor P, C-terminal VV93_RS05895 PF00563 EAL domain VV93_RS05895 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS05895 PF08447 PAS fold VV93_RS05895 PF08448 PAS fold VV93_RS05900 PF03104 DNA polymerase family B, exonuclease domain VV93_RS05900 PF00136 DNA polymerase family B VV93_RS05905 PF00072 Response regulator receiver domain VV93_RS05905 PF00196 Bacterial regulatory proteins, luxR family VV93_RS05910 PF02151 UvrB/uvrC motif VV93_RS05910 PF08459 UvrC Helix-hairpin-helix N-terminal VV93_RS05910 PF01541 GIY-YIG catalytic domain VV93_RS05915 PF01066 CDP-alcohol phosphatidyltransferase VV93_RS05940 PF13358 DDE superfamily endonuclease VV93_RS05950 PF00202 Aminotransferase class-III VV93_RS05955 PF03435 Saccharopine dehydrogenase NADP binding domain VV93_RS05955 PF16653 Saccharopine dehydrogenase C-terminal domain VV93_RS05975 PF02464 Competence-damaged protein VV93_RS05975 PF00994 Probable molybdopterin binding domain VV93_RS05985 PF00268 Ribonucleotide reductase, small chain VV93_RS05990 PF03477 ATP cone domain VV93_RS05990 PF02867 Ribonucleotide reductase, barrel domain VV93_RS05990 PF00317 Ribonucleotide reductase, all-alpha domain VV93_RS06005 PF00521 DNA gyrase/topoisomerase IV, subunit A VV93_RS06005 PF03989 DNA gyrase C-terminal domain, beta-propeller VV93_RS06020 PF02335 Cytochrome c552 VV93_RS06030 PF13247 4Fe-4S dicluster domain VV93_RS06035 PF03916 Polysulphide reductase, NrfD VV93_RS06040 PF01578 Cytochrome C assembly protein VV93_RS06040 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VV93_RS06045 PF08534 Redoxin VV93_RS06050 PF03918 Cytochrome C biogenesis protein VV93_RS06065 PF01588 Putative tRNA binding domain VV93_RS06065 PF09334 tRNA synthetases class I (M) VV93_RS06070 PF10609 NUBPL iron-transfer P-loop NTPase VV93_RS06075 PF00485 Phosphoribulokinase / Uridine kinase family VV93_RS06085 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP VV93_RS06085 PF12557 Cob(I)alamin adenosyltransferase N terminal VV93_RS06090 PF01451 Low molecular weight phosphotyrosine protein phosphatase VV93_RS06095 PF00916 Sulfate permease family VV93_RS06095 PF01740 STAS domain VV93_RS06100 PF12111 Polyribonucleotide phosphorylase C terminal VV93_RS06100 PF00575 S1 RNA binding domain VV93_RS06100 PF10150 Ribonuclease E/G family VV93_RS06105 PF01479 S4 domain VV93_RS06105 PF00849 RNA pseudouridylate synthase VV93_RS06110 PF02545 Maf-like protein VV93_RS06115 PF02620 Large ribosomal RNA subunit accumulation protein YceD VV93_RS06120 PF01783 Ribosomal L32p protein family VV93_RS06125 PF02504 Fatty acid synthesis protein VV93_RS06130 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VV93_RS06130 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VV93_RS06135 PF00698 Acyl transferase domain VV93_RS06145 PF00550 Phosphopantetheine attachment site VV93_RS06150 PF00109 Beta-ketoacyl synthase, N-terminal domain VV93_RS06150 PF02801 Beta-ketoacyl synthase, C-terminal domain VV93_RS06155 PF01063 Amino-transferase class IV VV93_RS06160 PF02618 YceG-like family VV93_RS06165 PF02223 Thymidylate kinase VV93_RS06170 PF09115 DNA polymerase III, delta subunit, C terminal VV93_RS06175 PF01026 TatD related DNase VV93_RS06180 PF02378 Phosphotransferase system, EIIC VV93_RS06180 PF00367 phosphotransferase system, EIIB VV93_RS06190 PF00209 Sodium:neurotransmitter symporter family VV93_RS06200 PF01734 Patatin-like phospholipase VV93_RS06205 PF00224 Pyruvate kinase, barrel domain VV93_RS06205 PF02887 Pyruvate kinase, alpha/beta domain VV93_RS06210 PF00480 ROK family VV93_RS06215 PF01584 CheW-like domain VV93_RS06215 PF00072 Response regulator receiver domain VV93_RS06220 PF14579 Helix-hairpin-helix motif VV93_RS06220 PF02811 PHP domain VV93_RS06220 PF01336 OB-fold nucleic acid binding domain VV93_RS06220 PF07733 Bacterial DNA polymerase III alpha NTPase domain VV93_RS06220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VV93_RS06235 PF00106 short chain dehydrogenase VV93_RS06240 PF01343 Peptidase family S49 VV93_RS06240 PF08496 Peptidase family S49 N-terminal VV93_RS06245 PF02224 Cytidylate kinase VV93_RS06250 PF00575 S1 RNA binding domain VV93_RS06255 PF00216 Bacterial DNA-binding protein VV93_RS06260 PF06305 Lipopolysaccharide assembly protein A domain VV93_RS06265 PF18073 Rubredoxin metal binding domain VV93_RS06270 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VV93_RS06275 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS06280 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS06280 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_RS06285 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_RS06290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_RS06290 PF00005 ABC transporter VV93_RS06295 PF00005 ABC transporter VV93_RS06295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_RS06310 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VV93_RS06315 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) VV93_RS06330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS06330 PF03466 LysR substrate binding domain VV93_RS06340 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VV93_RS06340 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VV93_RS06345 PF01037 Lrp/AsnC ligand binding domain VV93_RS06350 PF09397 Ftsk gamma domain VV93_RS06350 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VV93_RS06350 PF01580 FtsK/SpoIIIE family VV93_RS06350 PF17854 FtsK alpha domain VV93_RS06355 PF03548 Outer membrane lipoprotein carrier protein LolA VV93_RS06360 PF16193 AAA C-terminal domain VV93_RS06360 PF00004 ATPase family associated with various cellular activities (AAA) VV93_RS06360 PF12002 MgsA AAA+ ATPase C terminal VV93_RS06365 PF02403 Seryl-tRNA synthetase N-terminal domain VV93_RS06365 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VV93_RS06370 PF00202 Aminotransferase class-III VV93_RS06375 PF04055 Radical SAM superfamily VV93_RS06375 PF06968 Biotin and Thiamin Synthesis associated domain VV93_RS06380 PF00155 Aminotransferase class I and II VV93_RS06385 PF08241 Methyltransferase domain VV93_RS06395 PF01435 Peptidase family M48 VV93_RS06405 PF00106 short chain dehydrogenase VV93_RS06440 PF00206 Lyase VV93_RS06440 PF08328 Adenylosuccinate lyase C-terminal VV93_RS06445 PF04356 Protein of unknown function (DUF489) VV93_RS06460 PF00294 pfkB family carbohydrate kinase VV93_RS06465 PF00816 H-NS histone family VV93_RS06470 PF03553 Na+/H+ antiporter family VV93_RS06475 PF01634 ATP phosphoribosyltransferase VV93_RS06475 PF08029 HisG, C-terminal domain VV93_RS06480 PF00815 Histidinol dehydrogenase VV93_RS06485 PF00155 Aminotransferase class I and II VV93_RS06490 PF08645 Polynucleotide kinase 3 phosphatase VV93_RS06490 PF00475 Imidazoleglycerol-phosphate dehydratase VV93_RS06495 PF00117 Glutamine amidotransferase class-I VV93_RS06500 PF00977 Histidine biosynthesis protein VV93_RS06505 PF00977 Histidine biosynthesis protein VV93_RS06510 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VV93_RS06510 PF01502 Phosphoribosyl-AMP cyclohydrolase VV93_RS06515 PF02810 SEC-C motif VV93_RS06520 PF08668 HDOD domain VV93_RS06520 PF00563 EAL domain VV93_RS06525 PF00149 Calcineurin-like phosphoesterase VV93_RS06530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VV93_RS06535 PF09190 DALR domain VV93_RS06535 PF01406 tRNA synthetases class I (C) catalytic domain VV93_RS06540 PF00265 Thymidine kinase VV93_RS06550 PF01370 NAD dependent epimerase/dehydratase family VV93_RS06555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS06555 PF03466 LysR substrate binding domain VV93_RS06575 PF01226 Formate/nitrite transporter VV93_RS06580 PF03649 Uncharacterised protein family (UPF0014) VV93_RS06585 PF06796 Periplasmic nitrate reductase protein NapE VV93_RS06590 PF03264 NapC/NirT cytochrome c family, N-terminal region VV93_RS06595 PF01568 Molydopterin dinucleotide binding domain VV93_RS06595 PF18364 Molybdopterin oxidoreductase N-terminal domain VV93_RS06595 PF00384 Molybdopterin oxidoreductase VV93_RS06620 PF16875 Glycosyl hydrolase family 36 N-terminal domain VV93_RS06620 PF16874 Glycosyl hydrolase family 36 C-terminal domain VV93_RS06630 PF02833 DHHA2 domain VV93_RS06630 PF01368 DHH family VV93_RS06645 PF00005 ABC transporter VV93_RS06650 PF00005 ABC transporter VV93_RS06650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_RS06655 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS06655 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_RS06660 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS06665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_RS06670 PF00158 Sigma-54 interaction domain VV93_RS06670 PF02954 Bacterial regulatory protein, Fis family VV93_RS06675 PF04012 PspA/IM30 family VV93_RS06680 PF06667 Phage shock protein B VV93_RS06685 PF04024 PspC domain VV93_RS06695 PF13533 Biotin-lipoyl like VV93_RS06700 PF00873 AcrB/AcrD/AcrF family VV93_RS06705 PF03352 Methyladenine glycosylase VV93_RS06710 PF01053 Cys/Met metabolism PLP-dependent enzyme VV93_RS06715 PF13396 Phospholipase_D-nuclease N-terminal VV93_RS06715 PF13091 PLD-like domain VV93_RS06720 PF00209 Sodium:neurotransmitter symporter family VV93_RS06725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS06725 PF00672 HAMP domain VV93_RS06725 PF12729 Four helix bundle sensory module for signal transduction VV93_RS06730 PF00849 RNA pseudouridylate synthase VV93_RS06745 PF13358 DDE superfamily endonuclease VV93_RS06750 PF00111 2Fe-2S iron-sulfur cluster binding domain VV93_RS06750 PF00175 Oxidoreductase NAD-binding domain VV93_RS06750 PF00970 Oxidoreductase FAD-binding domain VV93_RS06755 PF03063 Prismane/CO dehydrogenase family VV93_RS06760 PF01590 GAF domain VV93_RS06760 PF00158 Sigma-54 interaction domain VV93_RS06765 PF01066 CDP-alcohol phosphatidyltransferase VV93_RS06770 PF00005 ABC transporter VV93_RS06775 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS06780 PF13416 Bacterial extracellular solute-binding protein VV93_RS06790 PF06945 Protein of unknown function (DUF1289) VV93_RS06800 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS06800 PF03707 Bacterial signalling protein N terminal repeat VV93_RS06800 PF00563 EAL domain VV93_RS06815 PF01386 Ribosomal L25p family VV93_RS06820 PF00672 HAMP domain VV93_RS06820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS06820 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS06825 PF00486 Transcriptional regulatory protein, C terminal VV93_RS06825 PF00072 Response regulator receiver domain VV93_RS06835 PF00271 Helicase conserved C-terminal domain VV93_RS06835 PF04851 Type III restriction enzyme, res subunit VV93_RS06845 PF13358 DDE superfamily endonuclease VV93_RS06850 PF00849 RNA pseudouridylate synthase VV93_RS06850 PF01479 S4 domain VV93_RS06855 PF07690 Major Facilitator Superfamily VV93_RS06865 PF00999 Sodium/hydrogen exchanger family VV93_RS06870 PF13460 NAD(P)H-binding VV93_RS06870 PF11066 Protein of unknown function (DUF2867) VV93_RS06875 PF00005 ABC transporter VV93_RS06890 PF06965 Na+/H+ antiporter 1 VV93_RS06900 PF09317 Domain of unknown function (DUF1974) VV93_RS06900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VV93_RS06900 PF02770 Acyl-CoA dehydrogenase, middle domain VV93_RS06900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VV93_RS06905 PF07055 Enoyl reductase FAD binding domain VV93_RS06905 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VV93_RS06905 PF12241 Trans-2-enoyl-CoA reductase catalytic region VV93_RS06910 PF06826 Predicted Permease Membrane Region VV93_RS06910 PF02080 TrkA-C domain VV93_RS06915 PF00462 Glutaredoxin VV93_RS06920 PF00465 Iron-containing alcohol dehydrogenase VV93_RS06925 PF01418 Helix-turn-helix domain, rpiR family VV93_RS06925 PF01380 SIS domain VV93_RS06930 PF00282 Pyridoxal-dependent decarboxylase conserved domain VV93_RS06940 PF03956 Lysine exporter LysO VV93_RS06950 PF04993 TfoX N-terminal domain VV93_RS06950 PF04994 TfoX C-terminal domain VV93_RS06965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS06965 PF13426 PAS domain VV93_RS06965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS06965 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS06965 PF13426 PAS domain VV93_RS06965 PF00989 PAS fold VV93_RS06965 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS06965 PF13188 PAS domain VV93_RS06965 PF13188 PAS domain VV93_RS06965 PF00989 PAS fold VV93_RS06975 PF00266 Aminotransferase class-V VV93_RS06980 PF00664 ABC transporter transmembrane region VV93_RS06980 PF00005 ABC transporter VV93_RS06985 PF00664 ABC transporter transmembrane region VV93_RS06985 PF00005 ABC transporter VV93_RS06990 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_RS07000 PF00266 Aminotransferase class-V VV93_RS07010 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS07010 PF00072 Response regulator receiver domain VV93_RS07015 PF00939 Sodium:sulfate symporter transmembrane region VV93_RS07020 PF02698 DUF218 domain VV93_RS07025 PF03949 Malic enzyme, NAD binding domain VV93_RS07025 PF00390 Malic enzyme, N-terminal domain VV93_RS07030 PF00270 DEAD/DEAH box helicase VV93_RS07030 PF04408 Helicase associated domain (HA2) VV93_RS07030 PF00271 Helicase conserved C-terminal domain VV93_RS07030 PF08482 ATP-dependent helicase C-terminal VV93_RS07035 PF02253 Phospholipase A1 VV93_RS07045 PF01259 SAICAR synthetase VV93_RS07055 PF04172 LrgB-like family VV93_RS07060 PF03788 LrgA family VV93_RS07065 PF00929 Exonuclease VV93_RS07065 PF08411 Exonuclease C-terminal VV93_RS07080 PF02277 Phosphoribosyltransferase VV93_RS07085 PF02654 Cobalamin-5-phosphate synthase VV93_RS07090 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase VV93_RS07105 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family VV93_RS07110 PF01032 FecCD transport family VV93_RS07115 PF00005 ABC transporter VV93_RS07130 PF07690 Major Facilitator Superfamily VV93_RS07135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS07135 PF03466 LysR substrate binding domain VV93_RS07145 PF01863 Protein of unknown function DUF45 VV93_RS07150 PF05971 RNA methyltransferase VV93_RS07165 PF04204 Homoserine O-succinyltransferase VV93_RS07170 PF00149 Calcineurin-like phosphoesterase VV93_RS07170 PF02872 5'-nucleotidase, C-terminal domain VV93_RS07175 PF07687 Peptidase dimerisation domain VV93_RS07175 PF01546 Peptidase family M20/M25/M40 VV93_RS07180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_RS07185 PF04209 homogentisate 1,2-dioxygenase VV93_RS07195 PF14497 Glutathione S-transferase, C-terminal domain VV93_RS07195 PF02798 Glutathione S-transferase, N-terminal domain VV93_RS07230 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS07230 PF00072 Response regulator receiver domain VV93_RS07235 PF00313 'Cold-shock' DNA-binding domain VV93_RS07240 PF00141 Peroxidase VV93_RS07245 PF03009 Glycerophosphoryl diester phosphodiesterase family VV93_RS07250 PF00455 DeoR C terminal sensor domain VV93_RS07250 PF08220 DeoR-like helix-turn-helix domain VV93_RS07255 PF17912 MalK OB fold domain VV93_RS07255 PF00005 ABC transporter VV93_RS07260 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS07265 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS07270 PF13416 Bacterial extracellular solute-binding protein VV93_RS07275 PF00072 Response regulator receiver domain VV93_RS07280 PF02743 Cache domain VV93_RS07280 PF00672 HAMP domain VV93_RS07280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS07285 PF01925 Sulfite exporter TauE/SafE VV93_RS07295 PF00072 Response regulator receiver domain VV93_RS07295 PF00196 Bacterial regulatory proteins, luxR family VV93_RS07320 PF01970 Tripartite tricarboxylate transporter TctA family VV93_RS07350 PF00285 Citrate synthase, C-terminal domain VV93_RS07355 PF00694 Aconitase C-terminal domain VV93_RS07355 PF00330 Aconitase family (aconitate hydratase) VV93_RS07360 PF04303 PrpF protein VV93_RS07365 PF16177 Acetyl-coenzyme A synthetase N-terminus VV93_RS07365 PF13193 AMP-binding enzyme C-terminal domain VV93_RS07365 PF00501 AMP-binding enzyme VV93_RS07385 PF00089 Trypsin VV93_RS07395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS07395 PF00672 HAMP domain VV93_RS07405 PF04055 Radical SAM superfamily VV93_RS07410 PF06508 Queuosine biosynthesis protein QueC VV93_RS07415 PF17151 Periplasmic sensor domain VV93_RS07415 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS07440 PF10672 S-adenosylmethionine-dependent methyltransferase VV93_RS07440 PF17785 PUA-like domain VV93_RS07445 PF00672 HAMP domain VV93_RS07445 PF02743 Cache domain VV93_RS07445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS07450 PF00708 Acylphosphatase VV93_RS07455 PF04358 DsrC like protein VV93_RS07465 PF01027 Inhibitor of apoptosis-promoting Bax1 VV93_RS07470 PF00005 ABC transporter VV93_RS07475 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS07480 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS07485 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_RS07490 PF10414 Sirohaem synthase dimerisation region VV93_RS07490 PF14824 Sirohaem biosynthesis protein central VV93_RS07490 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VV93_RS07495 PF12800 4Fe-4S binding domain VV93_RS07495 PF12838 4Fe-4S dicluster domain VV93_RS07500 PF12801 4Fe-4S binding domain VV93_RS07500 PF12837 4Fe-4S binding domain VV93_RS07505 PF01553 Acyltransferase VV93_RS07510 PF02074 Carboxypeptidase Taq (M32) metallopeptidase VV93_RS07525 PF01235 Sodium:alanine symporter family VV93_RS07555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_RS07570 PF17203 Single cache domain 3 VV93_RS07570 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain VV93_RS07570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS07570 PF00989 PAS fold VV93_RS07575 PF12431 Transcriptional regulator VV93_RS07575 PF00072 Response regulator receiver domain VV93_RS07580 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VV93_RS07580 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VV93_RS07585 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VV93_RS07590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VV93_RS07590 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VV93_RS07620 PF02397 Bacterial sugar transferase VV93_RS07630 PF00534 Glycosyl transferases group 1 VV93_RS07630 PF13439 Glycosyltransferase Family 4 VV93_RS07675 PF00072 Response regulator receiver domain VV93_RS07675 PF02954 Bacterial regulatory protein, Fis family VV93_RS07675 PF00158 Sigma-54 interaction domain VV93_RS07680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS07680 PF00072 Response regulator receiver domain VV93_RS07680 PF17149 Periplasmic sensor domain found in signal transduction proteins VV93_RS07680 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS07680 PF00672 HAMP domain VV93_RS07680 PF01627 Hpt domain VV93_RS07695 PF10531 SLBB domain VV93_RS07695 PF02563 Polysaccharide biosynthesis/export protein VV93_RS07705 PF01740 STAS domain VV93_RS07710 PF14743 DNA ligase OB-like domain VV93_RS07710 PF01068 ATP dependent DNA ligase domain VV93_RS07715 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS07715 PF17158 Membrane-associated sensor, integral membrane domain VV93_RS07720 PF04461 Protein of unknown function (DUF520) VV93_RS07725 PF00793 DAHP synthetase I family VV93_RS07740 PF17783 CvfB-like winged helix domain VV93_RS07740 PF13509 S1 domain VV93_RS07745 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF VV93_RS07745 PF01189 16S rRNA methyltransferase RsmB/F VV93_RS07745 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF VV93_RS07750 PF02470 MlaD protein VV93_RS07755 PF04403 Paraquat-inducible protein A VV93_RS07760 PF00664 ABC transporter transmembrane region VV93_RS07760 PF00005 ABC transporter VV93_RS07765 PF13185 GAF domain VV93_RS07770 PF04352 ProQ/FINO family VV93_RS07770 PF17516 ProQ C-terminal domain VV93_RS07775 PF00595 PDZ domain VV93_RS07775 PF11818 C-terminal domain of tail specific protease (DUF3340) VV93_RS07775 PF17804 Tail specific protease N-terminal domain VV93_RS07775 PF03572 Peptidase family S41 VV93_RS07785 PF11940 Domain of unknown function (DUF3458) Ig-like fold VV93_RS07785 PF01433 Peptidase family M1 domain VV93_RS07785 PF17432 Domain of unknown function (DUF3458_C) ARM repeats VV93_RS07790 PF05088 Bacterial NAD-glutamate dehydrogenase VV93_RS07795 PF01180 Dihydroorotate dehydrogenase VV93_RS07800 PF07126 Cell-division protein ZapC VV93_RS07805 PF02926 THUMP domain VV93_RS07805 PF01170 Putative RNA methylase family UPF0020 VV93_RS07805 PF10672 S-adenosylmethionine-dependent methyltransferase VV93_RS07815 PF12848 ABC transporter VV93_RS07815 PF16326 ABC transporter C-terminal domain VV93_RS07815 PF00005 ABC transporter VV93_RS07825 PF04957 Ribosome modulation factor VV93_RS07830 PF07977 FabA-like domain VV93_RS07835 PF13654 AAA domain VV93_RS07835 PF05362 Lon protease (S16) C-terminal proteolytic domain VV93_RS07840 PF06303 MatP N-terminal domain VV93_RS07840 PF17414 MatP C-terminal ribbon-helix-helix domain VV93_RS07890 PF01381 Helix-turn-helix VV93_RS07945 PF09308 LuxQ, periplasmic VV93_RS07945 PF00072 Response regulator receiver domain VV93_RS07945 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS07945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS07960 PF00115 Cytochrome C and Quinol oxidase polypeptide I VV93_RS07975 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VV93_RS07975 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP VV93_RS07985 PF00403 Heavy-metal-associated domain VV93_RS08000 PF00027 Cyclic nucleotide-binding domain VV93_RS08000 PF13545 Crp-like helix-turn-helix domain VV93_RS08005 PF00582 Universal stress protein family VV93_RS08010 PF01171 PP-loop family VV93_RS08020 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VV93_RS08030 PF08402 TOBE domain VV93_RS08030 PF00005 ABC transporter VV93_RS08035 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS08040 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS08045 PF13416 Bacterial extracellular solute-binding protein VV93_RS08050 PF13416 Bacterial extracellular solute-binding protein VV93_RS08055 PF13006 Insertion element 4 transposase N-terminal VV93_RS08055 PF01609 Transposase DDE domain VV93_RS08060 PF02146 Sir2 family VV93_RS08065 PF00909 Ammonium Transporter Family VV93_RS08105 PF13247 4Fe-4S dicluster domain VV93_RS08110 PF04879 Molybdopterin oxidoreductase Fe4S4 domain VV93_RS08110 PF01568 Molydopterin dinucleotide binding domain VV93_RS08110 PF00384 Molybdopterin oxidoreductase VV93_RS08140 PF02634 FdhD/NarQ family VV93_RS08145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS08145 PF00672 HAMP domain VV93_RS08150 PF00005 ABC transporter VV93_RS08150 PF12848 ABC transporter VV93_RS08165 PF00989 PAS fold VV93_RS08165 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS08165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS08170 PF02954 Bacterial regulatory protein, Fis family VV93_RS08170 PF00072 Response regulator receiver domain VV93_RS08170 PF00158 Sigma-54 interaction domain VV93_RS08175 PF12849 PBP superfamily domain VV93_RS08180 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS08185 PF08402 TOBE domain VV93_RS08185 PF00005 ABC transporter VV93_RS08190 PF12804 MobA-like NTP transferase domain VV93_RS08195 PF03454 MoeA C-terminal region (domain IV) VV93_RS08195 PF03453 MoeA N-terminal region (domain I and II) VV93_RS08195 PF00994 Probable molybdopterin binding domain VV93_RS08205 PF00480 ROK family VV93_RS08210 PF03942 DTW domain VV93_RS08220 PF12729 Four helix bundle sensory module for signal transduction VV93_RS08220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS08220 PF00672 HAMP domain VV93_RS08225 PF00877 NlpC/P60 family VV93_RS08235 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS08235 PF05230 MASE2 domain VV93_RS08240 PF01339 CheB methylesterase VV93_RS08240 PF00072 Response regulator receiver domain VV93_RS08245 PF03881 Fructosamine kinase VV93_RS08255 PF00677 Lumazine binding domain VV93_RS08260 PF01554 MatE VV93_RS08290 PF13276 HTH-like domain VV93_RS08290 PF00665 Integrase core domain VV93_RS08290 PF13333 Integrase core domain VV93_RS08320 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system VV93_RS08325 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system VV93_RS08340 PF05016 ParE toxin of type II toxin-antitoxin system, parDE VV93_RS08410 PF09905 DNA-binding protein VF530 VV93_RS08450 PF13302 Acetyltransferase (GNAT) domain VV93_RS08560 PF08808 RES domain VV93_RS08575 PF13302 Acetyltransferase (GNAT) domain VV93_RS08580 PF13358 DDE superfamily endonuclease VV93_RS08600 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA VV93_RS08605 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system VV93_RS08665 PF00589 Phage integrase family VV93_RS08665 PF13495 Phage integrase, N-terminal SAM-like domain VV93_RS08670 PF00453 Ribosomal protein L20 VV93_RS08675 PF01632 Ribosomal protein L35 VV93_RS08680 PF00707 Translation initiation factor IF-3, C-terminal domain VV93_RS08680 PF05198 Translation initiation factor IF-3, N-terminal domain VV93_RS08685 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VV93_RS08685 PF02824 TGS domain VV93_RS08685 PF03129 Anticodon binding domain VV93_RS08685 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VV93_RS08695 PF07070 SpoOM protein VV93_RS08700 PF00392 Bacterial regulatory proteins, gntR family VV93_RS08700 PF07702 UTRA domain VV93_RS08705 PF01979 Amidohydrolase family VV93_RS08710 PF00491 Arginase family VV93_RS08715 PF17392 Urocanase C-terminal domain VV93_RS08715 PF01175 Urocanase Rossmann-like domain VV93_RS08715 PF17391 Urocanase N-terminal domain VV93_RS08720 PF00221 Aromatic amino acid lyase VV93_RS08730 PF00089 Trypsin VV93_RS08740 PF02913 FAD linked oxidases, C-terminal domain VV93_RS08740 PF01565 FAD binding domain VV93_RS08740 PF13183 4Fe-4S dicluster domain VV93_RS08755 PF00691 OmpA family VV93_RS08755 PF13488 Glycine zipper VV93_RS08770 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VV93_RS08770 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region VV93_RS08775 PF02222 ATP-grasp domain VV93_RS08780 PF05724 Thiopurine S-methyltransferase (TPMT) VV93_RS08790 PF00216 Bacterial DNA-binding protein VV93_RS08805 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family VV93_RS08805 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain VV93_RS08815 PF13358 DDE superfamily endonuclease VV93_RS08820 PF03483 B3/4 domain VV93_RS08820 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VV93_RS08820 PF01588 Putative tRNA binding domain VV93_RS08820 PF03147 Ferredoxin-fold anticodon binding domain VV93_RS08820 PF03484 tRNA synthetase B5 domain VV93_RS08825 PF01409 tRNA synthetases class II core domain (F) VV93_RS08825 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VV93_RS08830 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS08830 PF00072 Response regulator receiver domain VV93_RS08890 PF17810 Arginine decarboxylase helical bundle domain VV93_RS08890 PF17944 Arginine decarboxylase C-terminal helical extension VV93_RS08890 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VV93_RS08895 PF00491 Arginase family VV93_RS08900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS08900 PF12729 Four helix bundle sensory module for signal transduction VV93_RS08900 PF00672 HAMP domain VV93_RS08915 PF07690 Major Facilitator Superfamily VV93_RS08920 PF03280 Proteobacterial lipase chaperone protein VV93_RS08925 PF00561 alpha/beta hydrolase fold VV93_RS08950 PF04408 Helicase associated domain (HA2) VV93_RS08950 PF11898 Domain of unknown function (DUF3418) VV93_RS08950 PF00270 DEAD/DEAH box helicase VV93_RS08950 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VV93_RS08950 PF00271 Helicase conserved C-terminal domain VV93_RS08960 PF02525 Flavodoxin-like fold VV93_RS08995 PF00437 Type II/IV secretion system protein VV93_RS09000 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VV93_RS09010 PF04972 BON domain VV93_RS09010 PF00263 Bacterial type II and III secretion system protein VV93_RS09010 PF13629 Pilus formation protein N terminal region VV93_RS09035 PF13358 DDE superfamily endonuclease VV93_RS09055 PF06629 MltA-interacting protein MipA VV93_RS09075 PF17158 Membrane-associated sensor, integral membrane domain VV93_RS09075 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS09085 PF00012 Hsp70 protein VV93_RS09090 PF00012 Hsp70 protein VV93_RS09105 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS09105 PF00563 EAL domain VV93_RS09105 PF03707 Bacterial signalling protein N terminal repeat VV93_RS09115 PF07963 Prokaryotic N-terminal methylation motif VV93_RS09130 PF13439 Glycosyltransferase Family 4 VV93_RS09130 PF00534 Glycosyl transferases group 1 VV93_RS09160 PF13358 DDE superfamily endonuclease VV93_RS09175 PF18412 Outer-membrane lipoprotein Wza C-terminal domain VV93_RS09175 PF10531 SLBB domain VV93_RS09175 PF02563 Polysaccharide biosynthesis/export protein VV93_RS09185 PF02397 Bacterial sugar transferase VV93_RS09190 PF01235 Sodium:alanine symporter family VV93_RS09195 PF00005 ABC transporter VV93_RS09195 PF00664 ABC transporter transmembrane region VV93_RS09200 PF00005 ABC transporter VV93_RS09200 PF00664 ABC transporter transmembrane region VV93_RS09215 PF00210 Ferritin-like domain VV93_RS09220 PF00072 Response regulator receiver domain VV93_RS09225 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_RS09230 PF03222 Tryptophan/tyrosine permease family VV93_RS09235 PF00781 Diacylglycerol kinase catalytic domain VV93_RS09245 PF01734 Patatin-like phospholipase VV93_RS09250 PF01966 HD domain VV93_RS09265 PF03466 LysR substrate binding domain VV93_RS09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS09270 PF04055 Radical SAM superfamily VV93_RS09275 PF11230 Protein of unknown function (DUF3029) VV93_RS09280 PF00563 EAL domain VV93_RS09280 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS09280 PF03707 Bacterial signalling protein N terminal repeat VV93_RS09280 PF13188 PAS domain VV93_RS09285 PF11871 Domain of unknown function (DUF3391) VV93_RS09285 PF01966 HD domain VV93_RS09300 PF00563 EAL domain VV93_RS09300 PF05231 MASE1 VV93_RS09305 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS09305 PF17158 Membrane-associated sensor, integral membrane domain VV93_RS09315 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_RS09315 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS09315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS09320 PF00939 Sodium:sulfate symporter transmembrane region VV93_RS09335 PF13302 Acetyltransferase (GNAT) domain VV93_RS09340 PF18024 Helix-turn-helix domain VV93_RS09340 PF13188 PAS domain VV93_RS09340 PF00158 Sigma-54 interaction domain VV93_RS09345 PF05128 Domain of unknown function (DUF697) VV93_RS09350 PF04317 YcjX-like family, DUF463 VV93_RS09365 PF04715 Anthranilate synthase component I, N terminal region VV93_RS09365 PF00425 chorismate binding enzyme VV93_RS09370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS09370 PF09308 LuxQ, periplasmic VV93_RS09370 PF00072 Response regulator receiver domain VV93_RS09370 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS09380 PF00293 NUDIX domain VV93_RS09385 PF03222 Tryptophan/tyrosine permease family VV93_RS09390 PF03313 Serine dehydratase alpha chain VV93_RS09390 PF03315 Serine dehydratase beta chain VV93_RS09395 PF00563 EAL domain VV93_RS09395 PF04940 Sensors of blue-light using FAD VV93_RS09405 PF01242 6-pyruvoyl tetrahydropterin synthase VV93_RS09410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS09410 PF17200 Single Cache domain 2 VV93_RS09410 PF00672 HAMP domain VV93_RS09415 PF01336 OB-fold nucleic acid binding domain VV93_RS09415 PF00152 tRNA synthetases class II (D, K and N) VV93_RS09425 PF00392 Bacterial regulatory proteins, gntR family VV93_RS09425 PF00155 Aminotransferase class I and II VV93_RS09440 PF00672 HAMP domain VV93_RS09440 PF01966 HD domain VV93_RS09450 PF13358 DDE superfamily endonuclease VV93_RS09455 PF00672 HAMP domain VV93_RS09455 PF01966 HD domain VV93_RS09460 PF00155 Aminotransferase class I and II VV93_RS09480 PF00672 HAMP domain VV93_RS09480 PF02743 Cache domain VV93_RS09480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS09485 PF02028 BCCT, betaine/carnitine/choline family transporter VV93_RS09490 PF01047 MarR family VV93_RS09495 PF00072 Response regulator receiver domain VV93_RS09495 PF00196 Bacterial regulatory proteins, luxR family VV93_RS09500 PF17200 Single Cache domain 2 VV93_RS09500 PF07730 Histidine kinase VV93_RS09505 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component VV93_RS09515 PF03480 Bacterial extracellular solute-binding protein, family 7 VV93_RS09530 PF00753 Metallo-beta-lactamase superfamily VV93_RS09535 PF05951 Bacterial protein of unknown function (DUF882) VV93_RS09540 PF03734 L,D-transpeptidase catalytic domain VV93_RS09540 PF01471 Putative peptidoglycan binding domain VV93_RS09565 PF00925 GTP cyclohydrolase II VV93_RS09570 PF00392 Bacterial regulatory proteins, gntR family VV93_RS09570 PF07840 FadR C-terminal domain VV93_RS09575 PF06450 Bacterial Na+/H+ antiporter B (NhaB) VV93_RS09580 PF02600 Disulfide bond formation protein DsbB VV93_RS09585 PF07516 SecA Wing and Scaffold domain VV93_RS09585 PF01043 SecA preprotein cross-linking domain VV93_RS09585 PF07517 SecA DEAD-like domain VV93_RS09585 PF02810 SEC-C motif VV93_RS09590 PF01207 Dihydrouridine synthase (Dus) VV93_RS09600 PF00128 Alpha amylase, catalytic domain VV93_RS09600 PF02903 Alpha amylase, N-terminal ig-like domain VV93_RS09605 PF00005 ABC transporter VV93_RS09610 PF02653 Branched-chain amino acid transport system / permease component VV93_RS09620 PF04217 Protein of unknown function, DUF412 VV93_RS09625 PF00871 Acetokinase family VV93_RS09630 PF07085 DRTGG domain VV93_RS09630 PF01515 Phosphate acetyl/butaryl transferase VV93_RS09635 PF01717 Cobalamin-independent synthase, Catalytic domain VV93_RS09635 PF08267 Cobalamin-independent synthase, N-terminal domain VV93_RS09640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS09640 PF03466 LysR substrate binding domain VV93_RS09655 PF03707 Bacterial signalling protein N terminal repeat VV93_RS09655 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS09655 PF00563 EAL domain VV93_RS09660 PF03707 Bacterial signalling protein N terminal repeat VV93_RS09660 PF00563 EAL domain VV93_RS09660 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS09665 PF04055 Radical SAM superfamily VV93_RS09665 PF11842 Domain of unknown function (DUF3362) VV93_RS09665 PF08497 Radical SAM N-terminal VV93_RS09670 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS09670 PF03707 Bacterial signalling protein N terminal repeat VV93_RS09670 PF00563 EAL domain VV93_RS09680 PF01740 STAS domain VV93_RS09680 PF00916 Sulfate permease family VV93_RS09685 PF02311 AraC-like ligand binding domain VV93_RS09685 PF12833 Helix-turn-helix domain VV93_RS09700 PF03741 Integral membrane protein TerC family VV93_RS09705 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV93_RS09705 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV93_RS09710 PF00465 Iron-containing alcohol dehydrogenase VV93_RS09715 PF00596 Class II Aldolase and Adducin N-terminal domain VV93_RS09720 PF05025 RbsD / FucU transport protein family VV93_RS09725 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VV93_RS09725 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VV93_RS09730 PF02952 L-fucose isomerase, C-terminal domain VV93_RS09730 PF07881 L-fucose isomerase, first N-terminal domain VV93_RS09730 PF07882 L-fucose isomerase, second N-terminal domain VV93_RS09735 PF07690 Major Facilitator Superfamily VV93_RS09740 PF08220 DeoR-like helix-turn-helix domain VV93_RS09740 PF00455 DeoR C terminal sensor domain VV93_RS09745 PF00672 HAMP domain VV93_RS09745 PF12729 Four helix bundle sensory module for signal transduction VV93_RS09745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS09750 PF13419 Haloacid dehalogenase-like hydrolase VV93_RS09765 PF04229 GrpB protein VV93_RS09795 PF08148 DSHCT (NUC185) domain VV93_RS09795 PF00271 Helicase conserved C-terminal domain VV93_RS09795 PF00270 DEAD/DEAH box helicase VV93_RS09800 PF13737 Transposase DDE domain VV93_RS09830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS09830 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS09835 PF00072 Response regulator receiver domain VV93_RS09835 PF00486 Transcriptional regulatory protein, C terminal VV93_RS09855 PF08281 Sigma-70, region 4 VV93_RS09855 PF04542 Sigma-70 region 2 VV93_RS09860 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS09860 PF17156 Gammaproteobacterial periplasmic sensor domain VV93_RS09870 PF02447 GntP family permease VV93_RS09875 PF01261 Xylose isomerase-like TIM barrel VV93_RS09880 PF00596 Class II Aldolase and Adducin N-terminal domain VV93_RS09885 PF07005 Sugar-binding N-terminal domain VV93_RS09885 PF17042 Nucleotide-binding C-terminal domain VV93_RS09890 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VV93_RS09890 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VV93_RS09895 PF08220 DeoR-like helix-turn-helix domain VV93_RS09895 PF00455 DeoR C terminal sensor domain VV93_RS09910 PF04002 RadC-like JAB domain VV93_RS09925 PF00075 RNase H VV93_RS09965 PF00589 Phage integrase family VV93_RS09965 PF13356 Arm DNA-binding domain VV93_RS09975 PF02796 Helix-turn-helix domain of resolvase VV93_RS09975 PF00239 Resolvase, N terminal domain VV93_RS09995 PF06610 L-alanine exporter VV93_RS10000 PF00072 Response regulator receiver domain VV93_RS10000 PF09308 LuxQ, periplasmic VV93_RS10000 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS10000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS10010 PF03738 Glutathionylspermidine synthase preATP-grasp VV93_RS10020 PF03994 Domain of Unknown Function (DUF350) VV93_RS10030 PF02445 Quinolinate synthetase A protein VV93_RS10035 PF16331 TolA binding protein trimerisation VV93_RS10035 PF13174 Tetratricopeptide repeat VV93_RS10040 PF00691 OmpA family VV93_RS10045 PF04052 TolB amino-terminal domain VV93_RS10045 PF07676 WD40-like Beta Propeller Repeat VV93_RS10055 PF02472 Biopolymer transport protein ExbD/TolR VV93_RS10060 PF01618 MotA/TolQ/ExbB proton channel family VV93_RS10065 PF03061 Thioesterase superfamily VV93_RS10080 PF02322 Cytochrome bd terminal oxidase subunit II VV93_RS10085 PF01654 Cytochrome bd terminal oxidase subunit I VV93_RS10090 PF17864 RuvB AAA lid domain VV93_RS10090 PF05491 RuvB C-terminal winged helix domain VV93_RS10090 PF05496 Holliday junction DNA helicase RuvB P-loop domain VV93_RS10095 PF01330 RuvA N terminal domain VV93_RS10095 PF07499 RuvA, C-terminal domain VV93_RS10100 PF00672 HAMP domain VV93_RS10100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS10100 PF02203 Tar ligand binding domain homologue VV93_RS10105 PF02075 Crossover junction endodeoxyribonuclease RuvC VV93_RS10110 PF02938 GAD domain VV93_RS10110 PF01336 OB-fold nucleic acid binding domain VV93_RS10110 PF00152 tRNA synthetases class II (D, K and N) VV93_RS10120 PF13649 Methyltransferase domain VV93_RS10125 PF08003 Protein of unknown function (DUF1698) VV93_RS10130 PF08443 RimK-like ATP-grasp domain VV93_RS10130 PF18030 RimK PreATP-grasp domain VV93_RS10145 PF13358 DDE superfamily endonuclease VV93_RS10155 PF00732 GMC oxidoreductase VV93_RS10155 PF05199 GMC oxidoreductase VV93_RS10160 PF00171 Aldehyde dehydrogenase family VV93_RS10165 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term VV93_RS10165 PF12833 Helix-turn-helix domain VV93_RS10170 PF16330 MukB hinge domain VV93_RS10170 PF04310 MukB N-terminal VV93_RS10175 PF04288 MukE-like family VV93_RS10180 PF17193 MukF C-terminal domain VV93_RS10180 PF17192 MukF middle domain VV93_RS10180 PF03882 MukF winged-helix domain VV93_RS10185 PF13847 Methyltransferase domain VV93_RS10190 PF02698 DUF218 domain VV93_RS10195 PF00486 Transcriptional regulatory protein, C terminal VV93_RS10195 PF00072 Response regulator receiver domain VV93_RS10200 PF02613 Nitrate reductase delta subunit VV93_RS10205 PF00356 Bacterial regulatory proteins, lacI family VV93_RS10210 PF04994 TfoX C-terminal domain VV93_RS10210 PF04993 TfoX N-terminal domain VV93_RS10225 PF00561 alpha/beta hydrolase fold VV93_RS10230 PF00534 Glycosyl transferases group 1 VV93_RS10230 PF08323 Starch synthase catalytic domain VV93_RS10235 PF00483 Nucleotidyl transferase VV93_RS10240 PF01131 DNA topoisomerase VV93_RS10240 PF01751 Toprim domain VV93_RS10240 PF01396 Topoisomerase DNA binding C4 zinc finger VV93_RS10240 PF08272 Topoisomerase I zinc-ribbon-like VV93_RS10250 PF10692 Protein of unknown function (DUF2498) VV93_RS10255 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VV93_RS10265 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VV93_RS10270 PF04377 Arginine-tRNA-protein transferase, C terminus VV93_RS10270 PF04376 Arginine-tRNA-protein transferase, N terminus VV93_RS10275 PF01176 Translation initiation factor 1A / IF-1 VV93_RS10280 PF00004 ATPase family associated with various cellular activities (AAA) VV93_RS10280 PF10431 C-terminal, D2-small domain, of ClpB protein VV93_RS10280 PF07724 AAA domain (Cdc48 subfamily) VV93_RS10280 PF17871 AAA lid domain VV93_RS10280 PF02861 Clp amino terminal domain, pathogenicity island component VV93_RS10285 PF02617 ATP-dependent Clp protease adaptor protein ClpS VV93_RS10290 PF00313 'Cold-shock' DNA-binding domain VV93_RS10295 PF03971 Monomeric isocitrate dehydrogenase VV93_RS10300 PF00849 RNA pseudouridylate synthase VV93_RS10305 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) VV93_RS10310 PF13609 Gram-negative porin VV93_RS10315 PF13307 Helicase C-terminal domain VV93_RS10315 PF06733 DEAD_2 VV93_RS10320 PF01925 Sulfite exporter TauE/SafE VV93_RS10325 PF07445 Primosomal replication protein priC VV93_RS10330 PF10689 Protein of unknown function (DUF2496) VV93_RS10335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS10335 PF00672 HAMP domain VV93_RS10340 PF03372 Endonuclease/Exonuclease/phosphatase family VV93_RS10350 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS10355 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS10360 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_RS10365 PF00005 ABC transporter VV93_RS10380 PF02901 Pyruvate formate lyase-like VV93_RS10380 PF01228 Glycine radical VV93_RS10390 PF00672 HAMP domain VV93_RS10390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS10395 PF04055 Radical SAM superfamily VV93_RS10405 PF03887 YfbU domain VV93_RS10410 PF06629 MltA-interacting protein MipA VV93_RS10415 PF08298 PrkA AAA domain VV93_RS10415 PF06798 PrkA serine protein kinase C-terminal domain VV93_RS10420 PF04285 Protein of unknown function (DUF444) VV93_RS10425 PF04293 SpoVR like protein VV93_RS10430 PF17155 Gammaproteobacterial periplasmic sensor domain VV93_RS10430 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS10435 PF02348 Cytidylyltransferase VV93_RS10440 PF03966 Trm112p-like protein VV93_RS10445 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VV93_RS10450 PF00664 ABC transporter transmembrane region VV93_RS10450 PF00005 ABC transporter VV93_RS10465 PF02687 FtsX-like permease family VV93_RS10465 PF12704 MacB-like periplasmic core domain VV93_RS10470 PF00005 ABC transporter VV93_RS10475 PF02687 FtsX-like permease family VV93_RS10475 PF12704 MacB-like periplasmic core domain VV93_RS10485 PF17757 UvrB interaction domain VV93_RS10485 PF03461 TRCF domain VV93_RS10485 PF00271 Helicase conserved C-terminal domain VV93_RS10485 PF00270 DEAD/DEAH box helicase VV93_RS10485 PF02559 CarD-like/TRCF domain VV93_RS10500 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_RS10505 PF05728 Uncharacterised protein family (UPF0227) VV93_RS10515 PF08139 Prokaryotic membrane lipoprotein lipid attachment site VV93_RS10515 PF13036 Peptidoglycan-synthase activator LpoB VV93_RS10530 PF01230 HIT domain VV93_RS10535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS10535 PF00672 HAMP domain VV93_RS10545 PF01048 Phosphorylase superfamily VV93_RS10550 PF00403 Heavy-metal-associated domain VV93_RS10555 PF01743 Poly A polymerase head domain VV93_RS10555 PF00571 CBS domain VV93_RS10560 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS10565 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain VV93_RS10565 PF01276 Orn/Lys/Arg decarboxylase, major domain VV93_RS10565 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain VV93_RS10570 PF13520 Amino acid permease VV93_RS10575 PF18500 CadC C-terminal domain 1 VV93_RS10575 PF00486 Transcriptional regulatory protein, C terminal VV93_RS10585 PF00672 HAMP domain VV93_RS10585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS10585 PF02743 Cache domain VV93_RS10595 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS10600 PF00571 CBS domain VV93_RS10600 PF01769 Divalent cation transporter VV93_RS10600 PF03448 MgtE intracellular N domain VV93_RS10610 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VV93_RS10610 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VV93_RS10615 PF13847 Methyltransferase domain VV93_RS10630 PF00245 Alkaline phosphatase VV93_RS10640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_RS10650 PF03692 Putative zinc- or iron-chelating domain VV93_RS10655 PF03692 Putative zinc- or iron-chelating domain VV93_RS10660 PF00230 Major intrinsic protein VV93_RS10665 PF00486 Transcriptional regulatory protein, C terminal VV93_RS10665 PF00072 Response regulator receiver domain VV93_RS10670 PF00672 HAMP domain VV93_RS10670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS10670 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS10700 PF13662 Toprim domain VV93_RS10700 PF02132 RecR protein VV93_RS10705 PF02575 YbaB/EbfC DNA-binding family VV93_RS10710 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VV93_RS10710 PF12170 DNA polymerase III tau subunit V interacting with alpha VV93_RS10710 PF12169 DNA polymerase III subunits gamma and tau domain III VV93_RS10715 PF00156 Phosphoribosyl transferase domain VV93_RS10725 PF00072 Response regulator receiver domain VV93_RS10730 PF03466 LysR substrate binding domain VV93_RS10730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS10735 PF00156 Phosphoribosyl transferase domain VV93_RS10740 PF02674 Colicin V production protein VV93_RS10745 PF05036 Sporulation related domain VV93_RS10750 PF08245 Mur ligase middle domain VV93_RS10750 PF02875 Mur ligase family, glutamate ligase domain VV93_RS10755 PF17848 Acetyl-coA carboxylase zinc finger domain VV93_RS10755 PF01039 Carboxyl transferase domain VV93_RS10760 PF01416 tRNA pseudouridine synthase VV93_RS10770 PF01118 Semialdehyde dehydrogenase, NAD binding domain VV93_RS10770 PF02774 Semialdehyde dehydrogenase, dimerisation domain VV93_RS10775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV93_RS10775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV93_RS10775 PF11890 Domain of unknown function (DUF3410) VV93_RS10780 PF00109 Beta-ketoacyl synthase, N-terminal domain VV93_RS10780 PF02801 Beta-ketoacyl synthase, C-terminal domain VV93_RS10785 PF05430 S-adenosyl-L-methionine-dependent methyltransferase VV93_RS10785 PF01266 FAD dependent oxidoreductase VV93_RS10790 PF08891 YfcL protein VV93_RS10795 PF04315 Elongation factor P hydroxylase VV93_RS10800 PF03458 UPF0126 domain VV93_RS10805 PF01264 Chorismate synthase VV93_RS10810 PF05175 Methyltransferase small domain VV93_RS10815 PF01713 Smr domain VV93_RS10820 PF00300 Histidine phosphatase superfamily (branch 1) VV93_RS10825 PF05193 Peptidase M16 inactive domain VV93_RS10825 PF00675 Insulinase (Peptidase family M16) VV93_RS10830 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VV93_RS10830 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VV93_RS10830 PF00378 Enoyl-CoA hydratase/isomerase VV93_RS10835 PF02803 Thiolase, C-terminal domain VV93_RS10835 PF00108 Thiolase, N-terminal domain VV93_RS10840 PF08281 Sigma-70, region 4 VV93_RS10840 PF04542 Sigma-70 region 2 VV93_RS10850 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV93_RS10855 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VV93_RS10860 PF04333 MlaA lipoprotein VV93_RS10865 PF03918 Cytochrome C biogenesis protein VV93_RS10870 PF03918 Cytochrome C biogenesis protein VV93_RS10875 PF08534 Redoxin VV93_RS10880 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VV93_RS10880 PF01578 Cytochrome C assembly protein VV93_RS10885 PF03100 CcmE VV93_RS10890 PF04995 Heme exporter protein D (CcmD) VV93_RS10895 PF01578 Cytochrome C assembly protein VV93_RS10900 PF03379 CcmB protein VV93_RS10905 PF00005 ABC transporter VV93_RS10915 PF01584 CheW-like domain VV93_RS10925 PF13614 AAA domain VV93_RS10930 PF00072 Response regulator receiver domain VV93_RS10930 PF01339 CheB methylesterase VV93_RS10935 PF00072 Response regulator receiver domain VV93_RS10935 PF01584 CheW-like domain VV93_RS10935 PF02895 Signal transducing histidine kinase, homodimeric domain VV93_RS10935 PF01627 Hpt domain VV93_RS10935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS10940 PF04344 Chemotaxis phosphatase, CheZ VV93_RS10945 PF00072 Response regulator receiver domain VV93_RS10950 PF04545 Sigma-70, region 4 VV93_RS10950 PF04539 Sigma-70 region 3 VV93_RS10950 PF04542 Sigma-70 region 2 VV93_RS10955 PF10609 NUBPL iron-transfer P-loop NTPase VV93_RS10960 PF00448 SRP54-type protein, GTPase domain VV93_RS10965 PF00771 FHIPEP family VV93_RS10970 PF01312 FlhB HrpN YscU SpaS Family VV93_RS10975 PF01311 Bacterial export proteins, family 1 VV93_RS10980 PF01313 Bacterial export proteins, family 3 VV93_RS10985 PF00813 FliP family VV93_RS10990 PF04347 Flagellar biosynthesis protein, FliO VV93_RS10995 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VV93_RS11000 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VV93_RS11000 PF02154 Flagellar motor switch protein FliM VV93_RS11020 PF18269 T3SS EscN ATPase C-terminal domain VV93_RS11020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VV93_RS11030 PF14842 FliG N-terminal domain VV93_RS11030 PF14841 FliG middle domain VV93_RS11030 PF01706 FliG C-terminal domain VV93_RS11035 PF01514 Secretory protein of YscJ/FliF family VV93_RS11035 PF08345 Flagellar M-ring protein C-terminal VV93_RS11040 PF02049 Flagellar hook-basal body complex protein FliE VV93_RS11045 PF02954 Bacterial regulatory protein, Fis family VV93_RS11045 PF00072 Response regulator receiver domain VV93_RS11045 PF00158 Sigma-54 interaction domain VV93_RS11050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS11050 PF13188 PAS domain VV93_RS11050 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS11055 PF02954 Bacterial regulatory protein, Fis family VV93_RS11055 PF06490 Flagellar regulatory protein FleQ VV93_RS11055 PF00158 Sigma-54 interaction domain VV93_RS11060 PF02561 Flagellar protein FliS VV93_RS11070 PF02465 Flagellar hook-associated protein 2 N-terminus VV93_RS11070 PF07195 Flagellar hook-associated protein 2 C-terminus VV93_RS11070 PF07196 Flagellin hook IN motif VV93_RS11075 PF03646 FlaG protein VV93_RS11080 PF07196 Flagellin hook IN motif VV93_RS11080 PF00700 Bacterial flagellin C-terminal helical region VV93_RS11080 PF00669 Bacterial flagellin N-terminal helical region VV93_RS11085 PF00669 Bacterial flagellin N-terminal helical region VV93_RS11085 PF07196 Flagellin hook IN motif VV93_RS11085 PF00700 Bacterial flagellin C-terminal helical region VV93_RS11090 PF00669 Bacterial flagellin N-terminal helical region VV93_RS11090 PF07196 Flagellin hook IN motif VV93_RS11090 PF00700 Bacterial flagellin C-terminal helical region VV93_RS11095 PF04261 Dyp-type peroxidase family VV93_RS11120 PF03960 ArsC family VV93_RS11125 PF07687 Peptidase dimerisation domain VV93_RS11125 PF01546 Peptidase family M20/M25/M40 VV93_RS11140 PF06804 NlpB/DapX lipoprotein VV93_RS11145 PF00701 Dihydrodipicolinate synthetase family VV93_RS11150 PF01842 ACT domain VV93_RS11155 PF00578 AhpC/TSA family VV93_RS11180 PF00578 AhpC/TSA family VV93_RS11195 PF10609 NUBPL iron-transfer P-loop NTPase VV93_RS11205 PF13657 HipA N-terminal domain VV93_RS11205 PF07804 HipA-like C-terminal domain VV93_RS11255 PF01594 AI-2E family transporter VV93_RS11265 PF01435 Peptidase family M48 VV93_RS11265 PF13181 Tetratricopeptide repeat VV93_RS11270 PF03960 ArsC family VV93_RS11275 PF03358 NADPH-dependent FMN reductase VV93_RS11290 PF00860 Permease family VV93_RS11300 PF02769 AIR synthase related protein, C-terminal domain VV93_RS11300 PF00586 AIR synthase related protein, N-terminal domain VV93_RS11305 PF00551 Formyl transferase VV93_RS11310 PF13230 Glutamine amidotransferases class-II VV93_RS11315 PF13580 SIS domain VV93_RS11320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VV93_RS11320 PF02770 Acyl-CoA dehydrogenase, middle domain VV93_RS11320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VV93_RS11320 PF09317 Domain of unknown function (DUF1974) VV93_RS11335 PF00999 Sodium/hydrogen exchanger family VV93_RS11335 PF02254 TrkA-N domain VV93_RS11340 PF02525 Flavodoxin-like fold VV93_RS11350 PF00929 Exonuclease VV93_RS11355 PF00075 RNase H VV93_RS11360 PF08241 Methyltransferase domain VV93_RS11365 PF16123 Hydroxyacylglutathione hydrolase C-terminus VV93_RS11365 PF00753 Metallo-beta-lactamase superfamily VV93_RS11370 PF01476 LysM domain VV93_RS11370 PF01464 Transglycosylase SLT domain VV93_RS11380 PF03372 Endonuclease/Exonuclease/phosphatase family VV93_RS11385 PF00543 Nitrogen regulatory protein P-II VV93_RS11390 PF00034 Cytochrome c VV93_RS11395 PF01171 PP-loop family VV93_RS11395 PF09179 TilS substrate binding domain VV93_RS11395 PF11734 TilS substrate C-terminal domain VV93_RS11400 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VV93_RS11405 PF07733 Bacterial DNA polymerase III alpha NTPase domain VV93_RS11405 PF01336 OB-fold nucleic acid binding domain VV93_RS11405 PF14579 Helix-hairpin-helix motif VV93_RS11405 PF02811 PHP domain VV93_RS11405 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VV93_RS11410 PF01351 Ribonuclease HII VV93_RS11415 PF02684 Lipid-A-disaccharide synthetase VV93_RS11420 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_RS11420 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VV93_RS11425 PF07977 FabA-like domain VV93_RS11430 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_RS11430 PF14602 Hexapeptide repeat of succinyl-transferase VV93_RS11430 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VV93_RS11435 PF03938 Outer membrane protein (OmpH-like) VV93_RS11440 PF07244 Surface antigen variable number repeat VV93_RS11440 PF01103 Surface antigen VV93_RS11445 PF02163 Peptidase family M50 VV93_RS11445 PF17820 PDZ domain VV93_RS11450 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VV93_RS11450 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VV93_RS11450 PF13288 DXP reductoisomerase C-terminal domain VV93_RS11460 PF01255 Putative undecaprenyl diphosphate synthase VV93_RS11465 PF01765 Ribosome recycling factor VV93_RS11470 PF00696 Amino acid kinase family VV93_RS11475 PF00889 Elongation factor TS VV93_RS11480 PF00318 Ribosomal protein S2 VV93_RS11485 PF00557 Metallopeptidase family M24 VV93_RS11490 PF01909 Nucleotidyltransferase domain VV93_RS11490 PF08335 GlnD PII-uridylyltransferase VV93_RS11490 PF01966 HD domain VV93_RS11495 PF11944 Protein of unknown function (DUF3461) VV93_RS11500 PF00849 RNA pseudouridylate synthase VV93_RS11505 PF04287 tRNA pseudouridine synthase C VV93_RS11535 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 VV93_RS11540 PF03806 AbgT putative transporter family VV93_RS11545 PF01197 Ribosomal protein L31 VV93_RS11550 PF01980 tRNA-methyltransferase O VV93_RS11550 PF18389 TrmO C-terminal domain VV93_RS11555 PF04073 Aminoacyl-tRNA editing domain VV93_RS11555 PF03129 Anticodon binding domain VV93_RS11555 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VV93_RS11565 PF06786 Uncharacterised protein family (UPF0253) VV93_RS11575 PF00209 Sodium:neurotransmitter symporter family VV93_RS11585 PF00704 Glycosyl hydrolases family 18 VV93_RS11585 PF00041 Fibronectin type III domain VV93_RS11595 PF16124 RecQ zinc-binding VV93_RS11595 PF00271 Helicase conserved C-terminal domain VV93_RS11595 PF09382 RQC domain VV93_RS11595 PF00270 DEAD/DEAH box helicase VV93_RS11595 PF00570 HRDC domain VV93_RS11600 PF00817 impB/mucB/samB family VV93_RS11600 PF11799 impB/mucB/samB family C-terminal domain VV93_RS11605 PF00072 Response regulator receiver domain VV93_RS11605 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS11615 PF02424 ApbE family VV93_RS11620 PF00111 2Fe-2S iron-sulfur cluster binding domain VV93_RS11620 PF00970 Oxidoreductase FAD-binding domain VV93_RS11620 PF00175 Oxidoreductase NAD-binding domain VV93_RS11625 PF02508 Rnf-Nqr subunit, membrane protein VV93_RS11630 PF02508 Rnf-Nqr subunit, membrane protein VV93_RS11635 PF04205 FMN-binding domain VV93_RS11640 PF03116 NQR2, RnfD, RnfE family VV93_RS11645 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) VV93_RS11645 PF11973 NQRA C-terminal domain VV93_RS11650 PF01722 BolA-like protein VV93_RS11655 PF05175 Methyltransferase small domain VV93_RS11665 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VV93_RS11670 PF07690 Major Facilitator Superfamily VV93_RS11680 PF04542 Sigma-70 region 2 VV93_RS11680 PF04545 Sigma-70, region 4 VV93_RS11690 PF03502 Nucleoside-specific channel-forming protein, Tsx VV93_RS11695 PF08546 Ketopantoate reductase PanE/ApbA C terminal VV93_RS11695 PF02558 Ketopantoate reductase PanE/ApbA VV93_RS11700 PF01965 DJ-1/PfpI family VV93_RS11705 PF00266 Aminotransferase class-V VV93_RS11715 PF02657 Fe-S metabolism associated domain VV93_RS11720 PF00899 ThiF family VV93_RS11725 PF03562 MltA specific insert domain VV93_RS11725 PF06725 3D domain VV93_RS11735 PF00696 Amino acid kinase family VV93_RS11735 PF00583 Acetyltransferase (GNAT) family VV93_RS11745 PF13538 UvrD-like helicase C-terminal domain VV93_RS11750 PF00580 UvrD/REP helicase N-terminal domain VV93_RS11750 PF12705 PD-(D/E)XK nuclease superfamily VV93_RS11750 PF13361 UvrD-like helicase C-terminal domain VV93_RS11755 PF17946 RecC C-terminal domain VV93_RS11760 PF11893 Domain of unknown function (DUF3413) VV93_RS11760 PF00884 Sulfatase VV93_RS11770 PF03466 LysR substrate binding domain VV93_RS11770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS11775 PF07130 YebG protein VV93_RS11780 PF14602 Hexapeptide repeat of succinyl-transferase VV93_RS11780 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle VV93_RS11785 PF00230 Major intrinsic protein VV93_RS11790 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VV93_RS11790 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VV93_RS11795 PF13358 DDE superfamily endonuclease VV93_RS11805 PF08220 DeoR-like helix-turn-helix domain VV93_RS11805 PF00455 DeoR C terminal sensor domain VV93_RS11810 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VV93_RS11810 PF01266 FAD dependent oxidoreductase VV93_RS11815 PF01544 CorA-like Mg2+ transporter protein VV93_RS11820 PF00583 Acetyltransferase (GNAT) family VV93_RS11825 PF02080 TrkA-C domain VV93_RS11825 PF08443 RimK-like ATP-grasp domain VV93_RS11825 PF18030 RimK PreATP-grasp domain VV93_RS11840 PF01588 Putative tRNA binding domain VV93_RS11845 PF00356 Bacterial regulatory proteins, lacI family VV93_RS11850 PF17200 Single Cache domain 2 VV93_RS11850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS11850 PF00672 HAMP domain VV93_RS11865 PF00356 Bacterial regulatory proteins, lacI family VV93_RS11870 PF01263 Aldose 1-epimerase VV93_RS11875 PF10509 Galactokinase galactose-binding signature VV93_RS11875 PF08544 GHMP kinases C terminal VV93_RS11875 PF00288 GHMP kinases N terminal domain VV93_RS11880 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain VV93_RS11880 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain VV93_RS11885 PF16363 GDP-mannose 4,6 dehydratase VV93_RS11890 PF00356 Bacterial regulatory proteins, lacI family VV93_RS11900 PF16353 Domain of unknown function(DUF4981) VV93_RS11900 PF00703 Glycosyl hydrolases family 2 VV93_RS11900 PF02836 Glycosyl hydrolases family 2, TIM barrel domain VV93_RS11900 PF02837 Glycosyl hydrolases family 2, sugar binding domain VV93_RS11900 PF02929 Beta galactosidase small chain VV93_RS11905 PF04074 YhcH/YjgK/YiaL VV93_RS11910 PF13520 Amino acid permease VV93_RS11915 PF13520 Amino acid permease VV93_RS11920 PF01204 Trehalase VV93_RS11930 PF03466 LysR substrate binding domain VV93_RS11930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS11935 PF02417 Chromate transporter VV93_RS11955 PF00437 Type II/IV secretion system protein VV93_RS11985 PF13629 Pilus formation protein N terminal region VV93_RS11985 PF04972 BON domain VV93_RS11985 PF00263 Bacterial type II and III secretion system protein VV93_RS12015 PF12833 Helix-turn-helix domain VV93_RS12015 PF02311 AraC-like ligand binding domain VV93_RS12020 PF00501 AMP-binding enzyme VV93_RS12030 PF03466 LysR substrate binding domain VV93_RS12030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS12040 PF13358 DDE superfamily endonuclease VV93_RS12045 PF03144 Elongation factor Tu domain 2 VV93_RS12045 PF00009 Elongation factor Tu GTP binding domain VV93_RS12045 PF00679 Elongation factor G C-terminus VV93_RS12045 PF03764 Elongation factor G, domain IV VV93_RS12045 PF14492 Elongation Factor G, domain II VV93_RS12060 PF03707 Bacterial signalling protein N terminal repeat VV93_RS12060 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS12060 PF00563 EAL domain VV93_RS12065 PF18073 Rubredoxin metal binding domain VV93_RS12075 PF18429 Domain of unknown function (DUF5609) VV93_RS12085 PF01048 Phosphorylase superfamily VV93_RS12090 PF01676 Metalloenzyme superfamily VV93_RS12095 PF02885 Glycosyl transferase family, helical bundle domain VV93_RS12095 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain VV93_RS12095 PF00591 Glycosyl transferase family, a/b domain VV93_RS12100 PF01791 DeoC/LacD family aldolase VV93_RS12105 PF01773 Na+ dependent nucleoside transporter N-terminus VV93_RS12105 PF07670 Nucleoside recognition VV93_RS12105 PF07662 Na+ dependent nucleoside transporter C-terminus VV93_RS12110 PF01026 TatD related DNase VV93_RS12115 PF16658 Class II release factor RF3, C-terminal domain VV93_RS12115 PF03144 Elongation factor Tu domain 2 VV93_RS12115 PF00009 Elongation factor Tu GTP binding domain VV93_RS12120 PF08448 PAS fold VV93_RS12120 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS12125 PF03707 Bacterial signalling protein N terminal repeat VV93_RS12125 PF00563 EAL domain VV93_RS12125 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS12130 PF00583 Acetyltransferase (GNAT) family VV93_RS12140 PF13508 Acetyltransferase (GNAT) domain VV93_RS12145 PF02036 SCP-2 sterol transfer family VV93_RS12150 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS12150 PF03707 Bacterial signalling protein N terminal repeat VV93_RS12150 PF00563 EAL domain VV93_RS12155 PF01136 Peptidase family U32 VV93_RS12160 PF01136 Peptidase family U32 VV93_RS12165 PF01554 MatE VV93_RS12175 PF07719 Tetratricopeptide repeat VV93_RS12175 PF13181 Tetratricopeptide repeat VV93_RS12180 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VV93_RS12180 PF00013 KH domain VV93_RS12180 PF01138 3' exoribonuclease family, domain 1 VV93_RS12180 PF03725 3' exoribonuclease family, domain 2 VV93_RS12180 PF00575 S1 RNA binding domain VV93_RS12205 PF00312 Ribosomal protein S15 VV93_RS12210 PF01509 TruB family pseudouridylate synthase (N terminal domain) VV93_RS12210 PF16198 tRNA pseudouridylate synthase B C-terminal domain VV93_RS12210 PF09157 Pseudouridine synthase II TruB, C-terminal VV93_RS12215 PF02033 Ribosome-binding factor A VV93_RS12220 PF04760 Translation initiation factor IF-2, N-terminal region VV93_RS12220 PF08364 Bacterial translation initiation factor IF-2 associated region VV93_RS12220 PF11987 Translation-initiation factor 2 VV93_RS12220 PF00009 Elongation factor Tu GTP binding domain VV93_RS12225 PF13184 NusA-like KH domain VV93_RS12225 PF00575 S1 RNA binding domain VV93_RS12225 PF08529 NusA N-terminal domain VV93_RS12230 PF02576 RimP N-terminal domain VV93_RS12230 PF17384 RimP C-terminal SH3 domain VV93_RS12245 PF03840 Preprotein translocase SecG subunit VV93_RS12250 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VV93_RS12250 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VV93_RS12250 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VV93_RS12250 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VV93_RS12255 PF00809 Pterin binding enzyme VV93_RS12260 PF06480 FtsH Extracellular VV93_RS12260 PF01434 Peptidase family M41 VV93_RS12260 PF17862 AAA+ lid domain VV93_RS12260 PF00004 ATPase family associated with various cellular activities (AAA) VV93_RS12265 PF01728 FtsJ-like methyltransferase VV93_RS12270 PF01985 CRS1 / YhbY (CRM) domain VV93_RS12275 PF01272 Transcription elongation factor, GreA/GreB, C-term VV93_RS12275 PF03449 Transcription elongation factor, N-terminal VV93_RS12285 PF13609 Gram-negative porin VV93_RS12290 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family VV93_RS12295 PF04304 Protein of unknown function (DUF454) VV93_RS12300 PF00579 tRNA synthetases class I (W and Y) VV93_RS12305 PF04225 Opacity-associated protein A LysM-like domain VV93_RS12305 PF01551 Peptidase family M23 VV93_RS12310 PF00873 AcrB/AcrD/AcrF family VV93_RS12315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_RS12320 PF01521 Iron-sulphur cluster biosynthesis VV93_RS12325 PF00202 Aminotransferase class-III VV93_RS12330 PF01594 AI-2E family transporter VV93_RS12335 PF05175 Methyltransferase small domain VV93_RS12335 PF08468 Methyltransferase small domain N-terminal VV93_RS12340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS12340 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS12340 PF09308 LuxQ, periplasmic VV93_RS12340 PF00072 Response regulator receiver domain VV93_RS12345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_RS12350 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS12355 PF12911 N-terminal TM domain of oligopeptide transport permease C VV93_RS12355 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS12360 PF00005 ABC transporter VV93_RS12360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_RS12365 PF00005 ABC transporter VV93_RS12365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region VV93_RS12375 PF01869 BadF/BadG/BcrA/BcrD ATPase family VV93_RS12380 PF00728 Glycosyl hydrolase family 20, catalytic domain VV93_RS12380 PF02838 Glycosyl hydrolase family 20, domain 2 VV93_RS12385 PF06165 Glycosyltransferase family 36 VV93_RS12385 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VV93_RS12390 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VV93_RS12390 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VV93_RS12390 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VV93_RS12390 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VV93_RS12395 PF00005 ABC transporter VV93_RS12395 PF08402 TOBE domain VV93_RS12405 PF13416 Bacterial extracellular solute-binding protein VV93_RS12410 PF00909 Ammonium Transporter Family VV93_RS12415 PF00543 Nitrogen regulatory protein P-II VV93_RS12420 PF06062 Uncharacterised protein family (UPF0231) VV93_RS12425 PF13556 PucR C-terminal helix-turn-helix domain VV93_RS12425 PF05651 Putative sugar diacid recognition VV93_RS12425 PF17853 GGDEF-like domain VV93_RS12430 PF02447 GntP family permease VV93_RS12435 PF02595 Glycerate kinase family VV93_RS12440 PF11791 Aconitate B N-terminal domain VV93_RS12440 PF00330 Aconitase family (aconitate hydratase) VV93_RS12440 PF06434 Aconitate hydratase 2 N-terminus VV93_RS12445 PF01734 Patatin-like phospholipase VV93_RS12450 PF00905 Penicillin binding protein transpeptidase domain VV93_RS12450 PF14814 Bifunctional transglycosylase second domain VV93_RS12450 PF00912 Transglycosylase VV93_RS12455 PF00270 DEAD/DEAH box helicase VV93_RS12455 PF04408 Helicase associated domain (HA2) VV93_RS12455 PF00271 Helicase conserved C-terminal domain VV93_RS12455 PF08482 ATP-dependent helicase C-terminal VV93_RS12460 PF17746 SfsA N-terminal OB domain VV93_RS12460 PF03749 Sugar fermentation stimulation protein RE domain VV93_RS12465 PF01258 Prokaryotic dksA/traR C4-type zinc finger VV93_RS12470 PF00749 tRNA synthetases class I (E and Q), catalytic domain VV93_RS12475 PF01743 Poly A polymerase head domain VV93_RS12475 PF12626 Polymerase A arginine-rich C-terminus VV93_RS12475 PF12627 Probable RNA and SrmB- binding site of polymerase A VV93_RS12480 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VV93_RS12485 PF02548 Ketopantoate hydroxymethyltransferase VV93_RS12490 PF02569 Pantoate-beta-alanine ligase VV93_RS12495 PF01061 ABC-2 type transporter VV93_RS12500 PF00005 ABC transporter VV93_RS12505 PF01740 STAS domain VV93_RS12505 PF00916 Sulfate permease family VV93_RS12510 PF00484 Carbonic anhydrase VV93_RS12515 PF00156 Phosphoribosyl transferase domain VV93_RS12520 PF00440 Bacterial regulatory proteins, tetR family VV93_RS12525 PF07992 Pyridine nucleotide-disulphide oxidoreductase VV93_RS12525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VV93_RS12530 PF02817 e3 binding domain VV93_RS12530 PF00364 Biotin-requiring enzyme VV93_RS12530 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VV93_RS12535 PF00456 Transketolase, thiamine diphosphate binding domain VV93_RS12535 PF17831 Pyruvate dehydrogenase E1 component middle domain VV93_RS12540 PF07729 FCD domain VV93_RS12540 PF00392 Bacterial regulatory proteins, gntR family VV93_RS12545 PF01510 N-acetylmuramoyl-L-alanine amidase VV93_RS12550 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VV93_RS12550 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VV93_RS12555 PF07963 Prokaryotic N-terminal methylation motif VV93_RS12555 PF00114 Pilin (bacterial filament) VV93_RS12560 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VV93_RS12560 PF00437 Type II/IV secretion system protein VV93_RS12565 PF00482 Type II secretion system (T2SS), protein F VV93_RS12570 PF01478 Type IV leader peptidase family VV93_RS12570 PF06750 Bacterial Peptidase A24 N-terminal domain VV93_RS12575 PF01121 Dephospho-CoA kinase VV93_RS12580 PF07072 Cell division protein VV93_RS12585 PF03884 DNA gyrase inhibitor YacG VV93_RS12590 PF01245 Ribosomal protein L19 VV93_RS12595 PF01746 tRNA (Guanine-1)-methyltransferase VV93_RS12600 PF01782 RimM N-terminal domain VV93_RS12600 PF05239 PRC-barrel domain VV93_RS12605 PF00886 Ribosomal protein S16 VV93_RS12610 PF00448 SRP54-type protein, GTPase domain VV93_RS12610 PF02978 Signal peptide binding domain VV93_RS12610 PF02881 SRP54-type protein, helical bundle domain VV93_RS12615 PF01578 Cytochrome C assembly protein VV93_RS12620 PF01595 Cyclin M transmembrane N-terminal domain VV93_RS12620 PF00571 CBS domain VV93_RS12620 PF03471 Transporter associated domain VV93_RS12625 PF02664 S-Ribosylhomocysteinase (LuxS) VV93_RS12635 PF04262 Glutamate-cysteine ligase VV93_RS12640 PF05193 Peptidase M16 inactive domain VV93_RS12640 PF00675 Insulinase (Peptidase family M16) VV93_RS12645 PF09335 SNARE associated Golgi protein VV93_RS12650 PF00107 Zinc-binding dehydrogenase VV93_RS12650 PF08240 Alcohol dehydrogenase GroES-like domain VV93_RS12655 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit VV93_RS12660 PF02436 Conserved carboxylase domain VV93_RS12660 PF00364 Biotin-requiring enzyme VV93_RS12660 PF00682 HMGL-like VV93_RS12665 PF04277 Oxaloacetate decarboxylase, gamma chain VV93_RS12710 PF02599 Global regulator protein family VV93_RS12715 PF01842 ACT domain VV93_RS12715 PF00696 Amino acid kinase family VV93_RS12715 PF13840 ACT domain VV93_RS12720 PF02272 DHHA1 domain VV93_RS12720 PF01411 tRNA synthetases class II (A) VV93_RS12720 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VV93_RS12725 PF02631 RecX family VV93_RS12730 PF00154 recA bacterial DNA recombination protein VV93_RS12735 PF02464 Competence-damaged protein VV93_RS12740 PF05190 MutS family domain IV VV93_RS12740 PF05192 MutS domain III VV93_RS12740 PF00488 MutS domain V VV93_RS12740 PF05188 MutS domain II VV93_RS12740 PF01624 MutS domain I VV93_RS12745 PF04542 Sigma-70 region 2 VV93_RS12745 PF04539 Sigma-70 region 3 VV93_RS12745 PF04545 Sigma-70, region 4 VV93_RS12745 PF00140 Sigma-70 factor, region 1.2 VV93_RS12750 PF01476 LysM domain VV93_RS12750 PF01551 Peptidase family M23 VV93_RS12760 PF01975 Survival protein SurE VV93_RS12765 PF01142 tRNA pseudouridine synthase D (TruD) VV93_RS12770 PF02542 YgbB family VV93_RS12775 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VV93_RS12780 PF04977 Septum formation initiator VV93_RS12785 PF03952 Enolase, N-terminal domain VV93_RS12785 PF00113 Enolase, C-terminal TIM barrel domain VV93_RS12790 PF06418 CTP synthase N-terminus VV93_RS12790 PF00117 Glutamine amidotransferase class-I VV93_RS12795 PF03819 MazG nucleotide pyrophosphohydrolase domain VV93_RS12800 PF13291 ACT domain VV93_RS12800 PF02824 TGS domain VV93_RS12800 PF04607 Region found in RelA / SpoT proteins VV93_RS12805 PF05958 tRNA (Uracil-5-)-methyltransferase VV93_RS12805 PF01938 TRAM domain VV93_RS12810 PF00672 HAMP domain VV93_RS12810 PF01627 Hpt domain VV93_RS12810 PF00072 Response regulator receiver domain VV93_RS12810 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VV93_RS12810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS12810 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS12815 PF03707 Bacterial signalling protein N terminal repeat VV93_RS12815 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS12815 PF00563 EAL domain VV93_RS12830 PF01648 4'-phosphopantetheinyl transferase superfamily VV93_RS12835 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VV93_RS12840 PF02565 Recombination protein O C terminal VV93_RS12840 PF11967 Recombination protein O N terminal VV93_RS12845 PF01926 50S ribosome-binding GTPase VV93_RS12845 PF07650 KH domain VV93_RS12850 PF00035 Double-stranded RNA binding motif VV93_RS12850 PF14622 Ribonuclease-III-like VV93_RS12855 PF10502 Signal peptidase, peptidase S26 VV93_RS12860 PF06421 GTP-binding protein LepA C-terminus VV93_RS12860 PF00009 Elongation factor Tu GTP binding domain VV93_RS12860 PF00679 Elongation factor G C-terminus VV93_RS12860 PF03144 Elongation factor Tu domain 2 VV93_RS12870 PF03888 MucB/RseB N-terminal domain VV93_RS12870 PF17188 MucB/RseB C-terminal domain VV93_RS12875 PF03872 Anti sigma-E protein RseA, N-terminal domain VV93_RS12875 PF03873 Anti sigma-E protein RseA, C-terminal domain VV93_RS12880 PF08281 Sigma-70, region 4 VV93_RS12880 PF04542 Sigma-70 region 2 VV93_RS12885 PF00890 FAD binding domain VV93_RS12885 PF02910 Fumarate reductase flavoprotein C-term VV93_RS12895 PF03937 Flavinator of succinate dehydrogenase VV93_RS12900 PF01571 Aminomethyltransferase folate-binding domain VV93_RS12915 PF01494 FAD binding domain VV93_RS12920 PF01494 FAD binding domain VV93_RS12925 PF03695 Uncharacterised protein family (UPF0149) VV93_RS12930 PF05164 Cell division protein ZapA VV93_RS12935 PF01812 5-formyltetrahydrofolate cyclo-ligase family VV93_RS12940 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VV93_RS12945 PF01842 ACT domain VV93_RS12945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV93_RS12945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV93_RS12955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS12955 PF03466 LysR substrate binding domain VV93_RS12960 PF01810 LysE type translocator VV93_RS12965 PF05552 Conserved TM helix VV93_RS12965 PF00924 Mechanosensitive ion channel VV93_RS12970 PF01116 Fructose-bisphosphate aldolase class-II VV93_RS12975 PF00162 Phosphoglycerate kinase VV93_RS12980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VV93_RS12980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VV93_RS12990 PF02780 Transketolase, C-terminal domain VV93_RS12990 PF00456 Transketolase, thiamine diphosphate binding domain VV93_RS12990 PF02779 Transketolase, pyrimidine binding domain VV93_RS12995 PF00438 S-adenosylmethionine synthetase, N-terminal domain VV93_RS12995 PF02772 S-adenosylmethionine synthetase, central domain VV93_RS12995 PF02773 S-adenosylmethionine synthetase, C-terminal domain VV93_RS13005 PF17283 SprT-like zinc ribbon domain VV93_RS13005 PF10263 SprT-like family VV93_RS13010 PF04231 Endonuclease I VV93_RS13020 PF04452 RNA methyltransferase VV93_RS13025 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VV93_RS13025 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VV93_RS13030 PF02622 Uncharacterized ACR, COG1678 VV93_RS13035 PF03652 Holliday junction resolvase VV93_RS13040 PF00437 Type II/IV secretion system protein VV93_RS13045 PF00437 Type II/IV secretion system protein VV93_RS13050 PF01168 Alanine racemase, N-terminal domain VV93_RS13055 PF14748 Pyrroline-5-carboxylate reductase dimerisation VV93_RS13055 PF03807 NADP oxidoreductase coenzyme F420-dependent VV93_RS13060 PF02325 YGGT family VV93_RS13065 PF02594 Uncharacterised ACR, YggU family COG1872 VV93_RS13075 PF01725 Ham1 family VV93_RS13080 PF06969 HemN C-terminal domain VV93_RS13080 PF04055 Radical SAM superfamily VV93_RS13090 PF04960 Glutaminase VV93_RS13095 PF02390 Putative methyltransferase VV93_RS13100 PF14815 NUDIX domain VV93_RS13100 PF00633 Helix-hairpin-helix motif VV93_RS13100 PF00730 HhH-GPD superfamily base excision DNA repair protein VV93_RS13105 PF04362 Bacterial Fe(2+) trafficking VV93_RS13110 PF01464 Transglycosylase SLT domain VV93_RS13110 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain VV93_RS13130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS13130 PF17200 Single Cache domain 2 VV93_RS13130 PF00672 HAMP domain VV93_RS13180 PF13358 DDE superfamily endonuclease VV93_RS13215 PF00072 Response regulator receiver domain VV93_RS13225 PF00356 Bacterial regulatory proteins, lacI family VV93_RS13230 PF04794 YdjC-like protein VV93_RS13235 PF11975 Family 4 glycosyl hydrolase C-terminal domain VV93_RS13235 PF02056 Family 4 glycosyl hydrolase VV93_RS13240 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit VV93_RS13245 PF02378 Phosphotransferase system, EIIC VV93_RS13250 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit VV93_RS13255 PF01522 Polysaccharide deacetylase VV93_RS13340 PF02899 Phage integrase, N-terminal SAM-like domain VV93_RS13340 PF00589 Phage integrase family VV93_RS13350 PF03739 Lipopolysaccharide export system permease LptF/LptG VV93_RS13355 PF03739 Lipopolysaccharide export system permease LptF/LptG VV93_RS13360 PF00883 Cytosol aminopeptidase family, catalytic domain VV93_RS13360 PF02789 Cytosol aminopeptidase family, N-terminal domain VV93_RS13365 PF13006 Insertion element 4 transposase N-terminal VV93_RS13365 PF01609 Transposase DDE domain VV93_RS13370 PF04364 DNA polymerase III chi subunit, HolC VV93_RS13375 PF08264 Anticodon-binding domain of tRNA VV93_RS13375 PF10458 Valyl tRNA synthetase tRNA binding arm VV93_RS13375 PF00133 tRNA synthetases class I (I, L, M and V) VV93_RS13385 PF05987 Bacterial protein of unknown function (DUF898) VV93_RS13395 PF00583 Acetyltransferase (GNAT) family VV93_RS13405 PF06877 Regulator of ribonuclease activity B VV93_RS13415 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VV93_RS13415 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VV93_RS13420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VV93_RS13420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VV93_RS13425 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain VV93_RS13425 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain VV93_RS13430 PF01042 Endoribonuclease L-PSP VV93_RS13435 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV93_RS13435 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV93_RS13440 PF00849 RNA pseudouridylate synthase VV93_RS13445 PF00271 Helicase conserved C-terminal domain VV93_RS13445 PF18337 RapA N-terminal Tudor like domain VV93_RS13445 PF18339 RapA N-terminal Tudor like domain 1 VV93_RS13445 PF00176 SNF2 family N-terminal domain VV93_RS13445 PF12137 RNA polymerase recycling family C-terminal VV93_RS13450 PF02562 PhoH-like protein VV93_RS13450 PF13638 PIN domain VV93_RS13455 PF01523 Putative modulator of DNA gyrase VV93_RS13460 PF00795 Carbon-nitrogen hydrolase VV93_RS13465 PF13116 Protein of unknown function VV93_RS13465 PF13502 AsmA-like C-terminal region VV93_RS13470 PF00575 S1 RNA binding domain VV93_RS13470 PF10150 Ribonuclease E/G family VV93_RS13475 PF02545 Maf-like protein VV93_RS13480 PF04093 rod shape-determining protein MreD VV93_RS13485 PF04085 rod shape-determining protein MreC VV93_RS13520 PF07963 Prokaryotic N-terminal methylation motif VV93_RS13525 PF07963 Prokaryotic N-terminal methylation motif VV93_RS13535 PF00482 Type II secretion system (T2SS), protein F VV93_RS13540 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VV93_RS13540 PF00437 Type II/IV secretion system protein VV93_RS13550 PF01471 Putative peptidoglycan binding domain VV93_RS13550 PF13401 AAA domain VV93_RS13555 PF11741 AMIN domain VV93_RS13555 PF00263 Bacterial type II and III secretion system protein VV93_RS13555 PF07660 Secretin and TonB N terminus short domain VV93_RS13555 PF03958 Bacterial type II/III secretion system short domain VV93_RS13575 PF17157 Gammaproteobacterial periplasmic sensor domain VV93_RS13575 PF00563 EAL domain VV93_RS13575 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS13580 PF00436 Single-strand binding protein family VV93_RS13585 PF00196 Bacterial regulatory proteins, luxR family VV93_RS13590 PF00483 Nucleotidyl transferase VV93_RS13595 PF17755 UvrA DNA-binding domain VV93_RS13595 PF00005 ABC transporter VV93_RS13595 PF17760 UvrA interaction domain VV93_RS13605 PF00266 Aminotransferase class-V VV93_RS13610 PF01842 ACT domain VV93_RS13610 PF00696 Amino acid kinase family VV93_RS13615 PF00809 Pterin binding enzyme VV93_RS13615 PF02607 B12 binding domain VV93_RS13615 PF02574 Homocysteine S-methyltransferase VV93_RS13615 PF02965 Vitamin B12 dependent methionine synthase, activation domain VV93_RS13615 PF02310 B12 binding domain VV93_RS13620 PF00999 Sodium/hydrogen exchanger family VV93_RS13625 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS13625 PF00072 Response regulator receiver domain VV93_RS13640 PF13358 DDE superfamily endonuclease VV93_RS13650 PF13358 DDE superfamily endonuclease VV93_RS13660 PF13358 DDE superfamily endonuclease VV93_RS13690 PF01507 Phosphoadenosine phosphosulfate reductase family VV93_RS13695 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain VV93_RS13695 PF01077 Nitrite and sulphite reductase 4Fe-4S domain VV93_RS13700 PF00667 FAD binding domain VV93_RS13700 PF00258 Flavodoxin VV93_RS13700 PF00175 Oxidoreductase NAD-binding domain VV93_RS13720 PF01207 Dihydrouridine synthase (Dus) VV93_RS13725 PF01475 Ferric uptake regulator family VV93_RS13735 PF00342 Phosphoglucose isomerase VV93_RS13740 PF01894 Uncharacterised protein family UPF0047 VV93_RS13750 PF00842 Alanine racemase, C-terminal domain VV93_RS13750 PF01168 Alanine racemase, N-terminal domain VV93_RS13755 PF03796 DnaB-like helicase C terminal domain VV93_RS13755 PF00772 DnaB-like helicase N terminal domain VV93_RS13765 PF03948 Ribosomal protein L9, C-terminal domain VV93_RS13765 PF01281 Ribosomal protein L9, N-terminal domain VV93_RS13770 PF01084 Ribosomal protein S18 VV93_RS13775 PF00436 Single-strand binding protein family VV93_RS13780 PF01250 Ribosomal protein S6 VV93_RS13785 PF00834 Ribulose-phosphate 3 epimerase family VV93_RS13790 PF02086 D12 class N6 adenine-specific DNA methyltransferase VV93_RS13800 PF01761 3-dehydroquinate synthase VV93_RS13805 PF01202 Shikimate kinase VV93_RS13810 PF03958 Bacterial type II/III secretion system short domain VV93_RS13810 PF07660 Secretin and TonB N terminus short domain VV93_RS13810 PF11741 AMIN domain VV93_RS13810 PF00263 Bacterial type II and III secretion system protein VV93_RS13835 PF00912 Transglycosylase VV93_RS13835 PF00905 Penicillin binding protein transpeptidase domain VV93_RS13835 PF17092 Penicillin-binding protein OB-like domain VV93_RS13840 PF03466 LysR substrate binding domain VV93_RS13840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS13850 PF00206 Lyase VV93_RS13850 PF00583 Acetyltransferase (GNAT) family VV93_RS13850 PF14698 Argininosuccinate lyase C-terminal VV93_RS13855 PF00764 Arginosuccinate synthase VV93_RS13860 PF00696 Amino acid kinase family VV93_RS13865 PF02774 Semialdehyde dehydrogenase, dimerisation domain VV93_RS13865 PF01118 Semialdehyde dehydrogenase, NAD binding domain VV93_RS13870 PF01546 Peptidase family M20/M25/M40 VV93_RS13870 PF07687 Peptidase dimerisation domain VV93_RS13875 PF00311 Phosphoenolpyruvate carboxylase VV93_RS13885 PF02219 Methylenetetrahydrofolate reductase VV93_RS13890 PF03447 Homoserine dehydrogenase, NAD binding domain VV93_RS13890 PF00696 Amino acid kinase family VV93_RS13890 PF00742 Homoserine dehydrogenase VV93_RS13895 PF01053 Cys/Met metabolism PLP-dependent enzyme VV93_RS13900 PF01340 Met Apo-repressor, MetJ VV93_RS13905 PF00390 Malic enzyme, N-terminal domain VV93_RS13905 PF03949 Malic enzyme, NAD binding domain VV93_RS13910 PF01197 Ribosomal protein L31 VV93_RS13915 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VV93_RS13915 PF00270 DEAD/DEAH box helicase VV93_RS13915 PF00271 Helicase conserved C-terminal domain VV93_RS13915 PF18074 Primosomal protein N C-terminal domain VV93_RS13915 PF17764 3′ DNA-binding domain (3′BD) VV93_RS13920 PF00356 Bacterial regulatory proteins, lacI family VV93_RS13930 PF00227 Proteasome subunit VV93_RS13935 PF10431 C-terminal, D2-small domain, of ClpB protein VV93_RS13935 PF00004 ATPase family associated with various cellular activities (AAA) VV93_RS13935 PF07724 AAA domain (Cdc48 subfamily) VV93_RS13940 PF01040 UbiA prenyltransferase family VV93_RS13945 PF03737 Aldolase/RraA VV93_RS13950 PF06005 Cell division protein ZapB VV93_RS13955 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded VV93_RS13980 PF00121 Triosephosphate isomerase VV93_RS13985 PF16363 GDP-mannose 4,6 dehydratase VV93_RS13990 PF00210 Ferritin-like domain VV93_RS13995 PF04324 BFD-like [2Fe-2S] binding domain VV93_RS14000 PF03144 Elongation factor Tu domain 2 VV93_RS14000 PF00009 Elongation factor Tu GTP binding domain VV93_RS14000 PF03143 Elongation factor Tu C-terminal domain VV93_RS14005 PF03764 Elongation factor G, domain IV VV93_RS14005 PF14492 Elongation Factor G, domain II VV93_RS14005 PF00679 Elongation factor G C-terminus VV93_RS14005 PF00009 Elongation factor Tu GTP binding domain VV93_RS14005 PF03144 Elongation factor Tu domain 2 VV93_RS14010 PF00177 Ribosomal protein S7p/S5e VV93_RS14015 PF00164 Ribosomal protein S12/S23 VV93_RS14025 PF02635 DsrE/DsrF-like family VV93_RS14030 PF02635 DsrE/DsrF-like family VV93_RS14035 PF08348 YheO-like PAS domain VV93_RS14035 PF13309 HTH domain VV93_RS14040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV93_RS14040 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VV93_RS14050 PF04102 SlyX VV93_RS14055 PF01112 Asparaginase VV93_RS14060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VV93_RS14070 PF02254 TrkA-N domain VV93_RS14070 PF00999 Sodium/hydrogen exchanger family VV93_RS14075 PF02525 Flavodoxin-like fold VV93_RS14080 PF12848 ABC transporter VV93_RS14080 PF00005 ABC transporter VV93_RS14090 PF00561 alpha/beta hydrolase fold VV93_RS14095 PF06794 Uncharacterised protein family (UPF0270) VV93_RS14100 PF00485 Phosphoribulokinase / Uridine kinase family VV93_RS14105 PF13545 Crp-like helix-turn-helix domain VV93_RS14105 PF00027 Cyclic nucleotide-binding domain VV93_RS14115 PF00171 Aldehyde dehydrogenase family VV93_RS14120 PF04958 Arginine N-succinyltransferase beta subunit VV93_RS14125 PF00202 Aminotransferase class-III VV93_RS14130 PF00117 Glutamine amidotransferase class-I VV93_RS14145 PF00579 tRNA synthetases class I (W and Y) VV93_RS14150 PF13419 Haloacid dehalogenase-like hydrolase VV93_RS14155 PF08032 RNA 2'-O ribose methyltransferase substrate binding VV93_RS14155 PF00588 SpoU rRNA Methylase family VV93_RS14160 PF00575 S1 RNA binding domain VV93_RS14160 PF00773 RNB domain VV93_RS14160 PF08206 Ribonuclease B OB domain VV93_RS14160 PF08461 Ribonuclease R winged-helix domain VV93_RS14160 PF17876 Cold shock domain VV93_RS14165 PF01979 Amidohydrolase family VV93_RS14170 PF02082 Transcriptional regulator VV93_RS14175 PF00970 Oxidoreductase FAD-binding domain VV93_RS14175 PF00175 Oxidoreductase NAD-binding domain VV93_RS14175 PF00042 Globin VV93_RS14180 PF08238 Sel1 repeat VV93_RS14185 PF00709 Adenylosuccinate synthetase VV93_RS14190 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) VV93_RS14195 PF01145 SPFH domain / Band 7 family VV93_RS14200 PF01145 SPFH domain / Band 7 family VV93_RS14200 PF12221 Bacterial membrane protein N terminal VV93_RS14205 PF13167 GTP-binding GTPase N-terminal VV93_RS14205 PF01926 50S ribosome-binding GTPase VV93_RS14205 PF16360 GTP-binding GTPase Middle Region VV93_RS14210 PF17209 Hfq protein VV93_RS14220 PF01119 DNA mismatch repair protein, C-terminal domain VV93_RS14220 PF08676 MutL C terminal dimerisation domain VV93_RS14225 PF01520 N-acetylmuramoyl-L-alanine amidase VV93_RS14230 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE VV93_RS14235 PF08331 Domain of unknown function (DUF1730) VV93_RS14295 PF00929 Exonuclease VV93_RS14300 PF03193 RsgA GTPase VV93_RS14305 PF02666 Phosphatidylserine decarboxylase VV93_RS14310 PF00939 Sodium:sulfate symporter transmembrane region VV93_RS14320 PF01676 Metalloenzyme superfamily VV93_RS14320 PF06415 BPG-independent PGAM N-terminus (iPGM_N) VV93_RS14330 PF00581 Rhodanese-like domain VV93_RS14335 PF02556 Preprotein translocase subunit SecB VV93_RS14340 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VV93_RS14340 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VV93_RS14345 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_RS14345 PF06426 Serine acetyltransferase, N-terminal VV93_RS14350 PF01551 Peptidase family M23 VV93_RS14360 PF08360 QacR-like protein, C-terminal region VV93_RS14360 PF00440 Bacterial regulatory proteins, tetR family VV93_RS14370 PF00152 tRNA synthetases class II (D, K and N) VV93_RS14375 PF02910 Fumarate reductase flavoprotein C-term VV93_RS14375 PF00890 FAD binding domain VV93_RS14380 PF13085 2Fe-2S iron-sulfur cluster binding domain VV93_RS14380 PF13183 4Fe-4S dicluster domain VV93_RS14385 PF02300 Fumarate reductase subunit C VV93_RS14390 PF02313 Fumarate reductase subunit D VV93_RS14400 PF09285 Elongation factor P, C-terminal VV93_RS14400 PF08207 Elongation factor P (EF-P) KOW-like domain VV93_RS14400 PF01132 Elongation factor P (EF-P) OB domain VV93_RS14405 PF04055 Radical SAM superfamily VV93_RS14410 PF02308 MgtC family VV93_RS14420 PF00118 TCP-1/cpn60 chaperonin family VV93_RS14425 PF00166 Chaperonin 10 Kd subunit VV93_RS14430 PF01554 MatE VV93_RS14435 PF00365 Phosphofructokinase VV93_RS14440 PF01545 Cation efflux family VV93_RS14440 PF16916 Dimerisation domain of Zinc Transporter VV93_RS14445 PF07813 LTXXQ motif family protein VV93_RS14450 PF00486 Transcriptional regulatory protein, C terminal VV93_RS14450 PF00072 Response regulator receiver domain VV93_RS14455 PF00672 HAMP domain VV93_RS14455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS14455 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS14455 PF16527 Two-component sensor protein CpxA, periplasmic domain VV93_RS14460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VV93_RS14460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VV93_RS14465 PF00588 SpoU rRNA Methylase family VV93_RS14470 PF04186 FxsA cytoplasmic membrane protein VV93_RS14475 PF00206 Lyase VV93_RS14475 PF10415 Fumarase C C-terminus VV93_RS14480 PF03605 Anaerobic c4-dicarboxylate membrane transporter VV93_RS14485 PF02683 Cytochrome C biogenesis protein transmembrane region VV93_RS14485 PF11412 Disulphide bond corrector protein DsbC VV93_RS14490 PF00196 Bacterial regulatory proteins, luxR family VV93_RS14490 PF00072 Response regulator receiver domain VV93_RS14495 PF01914 MarC family integral membrane protein VV93_RS14505 PF00474 Sodium:solute symporter family VV93_RS14510 PF00672 HAMP domain VV93_RS14510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VV93_RS14510 PF00072 Response regulator receiver domain VV93_RS14510 PF01627 Hpt domain VV93_RS14510 PF00512 His Kinase A (phospho-acceptor) domain VV93_RS14515 PF12832 MFS_1 like family VV93_RS14530 PF16177 Acetyl-coenzyme A synthetase N-terminus VV93_RS14530 PF00501 AMP-binding enzyme VV93_RS14530 PF13193 AMP-binding enzyme C-terminal domain VV93_RS14535 PF01220 Dehydroquinase class II VV93_RS14540 PF00364 Biotin-requiring enzyme VV93_RS14545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VV93_RS14545 PF00289 Biotin carboxylase, N-terminal domain VV93_RS14545 PF02785 Biotin carboxylase C-terminal domain VV93_RS14555 PF01207 Dihydrouridine synthase (Dus) VV93_RS14560 PF02954 Bacterial regulatory protein, Fis family VV93_RS14565 PF17200 Single Cache domain 2 VV93_RS14565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VV93_RS14565 PF00672 HAMP domain VV93_RS14570 PF13411 MerR HTH family regulatory protein VV93_RS14575 PF02142 MGS-like domain VV93_RS14575 PF01808 AICARFT/IMPCHase bienzyme VV93_RS14580 PF02844 Phosphoribosylglycinamide synthetase, N domain VV93_RS14580 PF02843 Phosphoribosylglycinamide synthetase, C domain VV93_RS14580 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VV93_RS14585 PF13358 DDE superfamily endonuclease VV93_RS14600 PF00216 Bacterial DNA-binding protein VV93_RS14605 PF01595 Cyclin M transmembrane N-terminal domain VV93_RS14605 PF00571 CBS domain VV93_RS14610 PF04222 Protein of unknown function (DUF416) VV93_RS14615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VV93_RS14615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VV93_RS14620 PF03167 Uracil DNA glycosylase superfamily VV93_RS14625 PF01208 Uroporphyrinogen decarboxylase (URO-D) VV93_RS14640 PF00293 NUDIX domain VV93_RS14640 PF09297 NADH pyrophosphatase zinc ribbon domain VV93_RS14645 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ VV93_RS14650 PF04983 RNA polymerase Rpb1, domain 3 VV93_RS14650 PF05000 RNA polymerase Rpb1, domain 4 VV93_RS14650 PF04997 RNA polymerase Rpb1, domain 1 VV93_RS14650 PF00623 RNA polymerase Rpb1, domain 2 VV93_RS14650 PF04998 RNA polymerase Rpb1, domain 5 VV93_RS14655 PF04560 RNA polymerase Rpb2, domain 7 VV93_RS14655 PF04565 RNA polymerase Rpb2, domain 3 VV93_RS14655 PF00562 RNA polymerase Rpb2, domain 6 VV93_RS14655 PF10385 RNA polymerase beta subunit external 1 domain VV93_RS14655 PF04561 RNA polymerase Rpb2, domain 2 VV93_RS14655 PF04563 RNA polymerase beta subunit VV93_RS14660 PF16320 Ribosomal protein L7/L12 dimerisation domain VV93_RS14660 PF00542 Ribosomal protein L7/L12 C-terminal domain VV93_RS14665 PF00466 Ribosomal protein L10 VV93_RS14670 PF00687 Ribosomal protein L1p/L10e family VV93_RS14675 PF00298 Ribosomal protein L11, RNA binding domain VV93_RS14675 PF03946 Ribosomal protein L11, N-terminal domain VV93_RS14680 PF02357 Transcription termination factor nusG VV93_RS14680 PF00467 KOW motif VV93_RS14685 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VV93_RS14690 PF00009 Elongation factor Tu GTP binding domain VV93_RS14690 PF03144 Elongation factor Tu domain 2 VV93_RS14690 PF03143 Elongation factor Tu C-terminal domain VV93_RS14715 PF00485 Phosphoribulokinase / Uridine kinase family VV93_RS14720 PF02237 Biotin protein ligase C terminal domain VV93_RS14720 PF08279 HTH domain VV93_RS14720 PF03099 Biotin/lipoate A/B protein ligase family VV93_RS14725 PF01565 FAD binding domain VV93_RS14725 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VV93_RS14735 PF13091 PLD-like domain VV93_RS14745 PF13358 DDE superfamily endonuclease VV93_RS14755 PF13358 DDE superfamily endonuclease VV93_RS14765 PF13358 DDE superfamily endonuclease VV93_RS14800 PF00175 Oxidoreductase NAD-binding domain VV93_RS14805 PF00175 Oxidoreductase NAD-binding domain VV93_RS14805 PF00970 Oxidoreductase FAD-binding domain VV93_RS14805 PF00111 2Fe-2S iron-sulfur cluster binding domain VV93_RS14810 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase VV93_RS14820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VV93_RS14820 PF07498 Rho termination factor, N-terminal domain VV93_RS14820 PF07497 Rho termination factor, RNA-binding domain VV93_RS14825 PF00085 Thioredoxin VV93_RS14830 PF00270 DEAD/DEAH box helicase VV93_RS14830 PF00271 Helicase conserved C-terminal domain VV93_RS14835 PF02541 Ppx/GppA phosphatase family VV93_RS14840 PF02592 Putative vitamin uptake transporter VV93_RS14850 PF00271 Helicase conserved C-terminal domain VV93_RS14850 PF00270 DEAD/DEAH box helicase VV93_RS14850 PF09382 RQC domain VV93_RS14850 PF16124 RecQ zinc-binding VV93_RS14850 PF00570 HRDC domain VV93_RS14855 PF00892 EamA-like transporter family VV93_RS14865 PF01810 LysE type translocator VV93_RS14870 PF13361 UvrD-like helicase C-terminal domain VV93_RS14870 PF00580 UvrD/REP helicase N-terminal domain VV93_RS14880 PF05114 Protein of unknown function (DUF692) VV93_RS14895 PF07690 Major Facilitator Superfamily VV93_RS14900 PF03466 LysR substrate binding domain VV93_RS14900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS14905 PF00557 Metallopeptidase family M24 VV93_RS14905 PF01321 Creatinase/Prolidase N-terminal domain VV93_RS14905 PF01321 Creatinase/Prolidase N-terminal domain VV93_RS14905 PF00557 Metallopeptidase family M24 VV93_RS14910 PF06968 Biotin and Thiamin Synthesis associated domain VV93_RS14910 PF04055 Radical SAM superfamily VV93_RS14915 PF05690 Thiazole biosynthesis protein ThiG VV93_RS14925 PF00899 ThiF family VV93_RS14930 PF02581 Thiamine monophosphate synthase VV93_RS14935 PF13667 ThiC-associated domain VV93_RS14935 PF01964 Radical SAM ThiC family VV93_RS14940 PF02537 CrcB-like protein, Camphor Resistance (CrcB) VV93_RS14945 PF07732 Multicopper oxidase VV93_RS14945 PF00394 Multicopper oxidase VV93_RS14945 PF07731 Multicopper oxidase VV93_RS14965 PF13358 DDE superfamily endonuclease VV93_RS14975 PF13358 DDE superfamily endonuclease VV93_RS15015 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_RS15020 PF07369 Protein of unknown function (DUF1488) VV93_RS15025 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VV93_RS15025 PF01488 Shikimate / quinate 5-dehydrogenase VV93_RS15025 PF08501 Shikimate dehydrogenase substrate binding domain VV93_RS15030 PF01218 Coproporphyrinogen III oxidase VV93_RS15035 PF01300 Telomere recombination VV93_RS15040 PF00731 AIR carboxylase VV93_RS15045 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VV93_RS15045 PF02222 ATP-grasp domain VV93_RS15050 PF01396 Topoisomerase DNA binding C4 zinc finger VV93_RS15055 PF04361 Protein of unknown function (DUF494) VV93_RS15060 PF17782 DprA winged helix domain VV93_RS15060 PF02481 DNA recombination-mediator protein A VV93_RS15070 PF01327 Polypeptide deformylase VV93_RS15075 PF00551 Formyl transferase VV93_RS15075 PF02911 Formyl transferase, C-terminal domain VV93_RS15080 PF01189 16S rRNA methyltransferase RsmB/F VV93_RS15080 PF01029 NusB family VV93_RS15085 PF02254 TrkA-N domain VV93_RS15085 PF02080 TrkA-C domain VV93_RS15090 PF02386 Cation transport protein VV93_RS15095 PF03006 Haemolysin-III related VV93_RS15100 PF07070 SpoOM protein VV93_RS15105 PF06288 Protein of unknown function (DUF1040) VV93_RS15110 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase VV93_RS15110 PF12801 4Fe-4S binding domain VV93_RS15110 PF13746 4Fe-4S dicluster domain VV93_RS15115 PF01636 Phosphotransferase enzyme family VV93_RS15120 PF01323 DSBA-like thioredoxin domain VV93_RS15125 PF01553 Acyltransferase VV93_RS15135 PF13335 Magnesium chelatase, subunit ChlI C-terminal VV93_RS15135 PF01078 Magnesium chelatase, subunit ChlI VV93_RS15140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VV93_RS15140 PF00205 Thiamine pyrophosphate enzyme, central domain VV93_RS15140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VV93_RS15150 PF01063 Amino-transferase class IV VV93_RS15155 PF00920 Dehydratase family VV93_RS15160 PF00585 C-terminal regulatory domain of Threonine dehydratase VV93_RS15160 PF00291 Pyridoxal-phosphate dependent enzyme VV93_RS15165 PF03466 LysR substrate binding domain VV93_RS15165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VV93_RS15170 PF07690 Major Facilitator Superfamily VV93_RS15175 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_RS15180 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS15185 PF12804 MobA-like NTP transferase domain VV93_RS15185 PF00132 Bacterial transferase hexapeptide (six repeats) VV93_RS15190 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VV93_RS15190 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VV93_RS15195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VV93_RS15195 PF02874 ATP synthase alpha/beta family, beta-barrel domain VV93_RS15200 PF00231 ATP synthase VV93_RS15205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VV93_RS15205 PF02874 ATP synthase alpha/beta family, beta-barrel domain VV93_RS15205 PF00306 ATP synthase alpha/beta chain, C terminal domain VV93_RS15210 PF00213 ATP synthase delta (OSCP) subunit VV93_RS15215 PF00430 ATP synthase B/B' CF(0) VV93_RS15220 PF00137 ATP synthase subunit C VV93_RS15225 PF00119 ATP synthase A chain VV93_RS15230 PF03899 ATP synthase I chain VV93_RS15235 PF02195 ParB-like nuclease domain VV93_RS15235 PF17762 HTH domain found in ParB protein VV93_RS15240 PF13614 AAA domain VV93_RS15245 PF02527 rRNA small subunit methyltransferase G VV93_RS15250 PF01134 Glucose inhibited division protein A VV93_RS15250 PF13932 GidA associated domain VV93_RS15260 PF00258 Flavodoxin VV93_RS15315 PF12161 HsdM N-terminal domain VV93_RS15315 PF02384 N-6 DNA Methylase VV93_RS15325 PF08463 EcoEI R protein C-terminal VV93_RS15325 PF00271 Helicase conserved C-terminal domain VV93_RS15325 PF04851 Type III restriction enzyme, res subunit VV93_RS15325 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) VV93_RS15350 PF02899 Phage integrase, N-terminal SAM-like domain VV93_RS15350 PF00589 Phage integrase family VV93_RS15355 PF10396 GTP-binding protein TrmE N-terminus VV93_RS15355 PF12631 MnmE helical domain VV93_RS15355 PF01926 50S ribosome-binding GTPase VV93_RS15360 PF02096 60Kd inner membrane protein VV93_RS15360 PF14849 YidC periplasmic domain VV93_RS15365 PF00825 Ribonuclease P VV93_RS15370 PF00468 Ribosomal protein L34 VV93_RS15375 PF00005 ABC transporter VV93_RS15380 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS15385 PF00497 Bacterial extracellular solute-binding proteins, family 3 VV93_RS15570 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VV93_RS15570 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VV93_RS15580 PF00873 AcrB/AcrD/AcrF family VV93_RS15735 PF00892 EamA-like transporter family VV93_RS16170 PF03707 Bacterial signalling protein N terminal repeat VV93_RS16170 PF00563 EAL domain VV93_RS16170 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS16365 PF13291 ACT domain VV93_RS16365 PF04607 Region found in RelA / SpoT proteins VV93_RS16365 PF02824 TGS domain VV93_RS16460 PF00529 HlyD membrane-fusion protein of T1SS VV93_RS16460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VV93_RS16635 PF03279 Bacterial lipid A biosynthesis acyltransferase VV93_RS16925 PF17291 N-terminal domain of M60-like peptidases VV93_RS16925 PF13322 Domain of unknown function (DUF4092) VV93_RS16925 PF13402 Peptidase M60, enhancin and enhancin-like VV93_RS16955 PF00181 Ribosomal Proteins L2, RNA binding domain VV93_RS16955 PF03947 Ribosomal Proteins L2, C-terminal domain VV93_RS17045 PF02080 TrkA-C domain VV93_RS17045 PF03600 Citrate transporter VV93_RS17090 PF04357 TamB, inner membrane protein subunit of TAM complex VV93_RS17120 PF00528 Binding-protein-dependent transport system inner membrane component VV93_RS17155 PF04963 Sigma-54 factor, core binding domain VV93_RS17155 PF00309 Sigma-54 factor, Activator interacting domain (AID) VV93_RS17155 PF04552 Sigma-54, DNA binding domain VV93_RS17260 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VV93_RS17280 PF04453 LPS transport system D VV93_RS17280 PF03968 OstA-like protein VV93_RS17380 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS17380 PF07694 5TMR of 5TMR-LYT VV93_RS17635 PF13401 AAA domain VV93_RS17635 PF01471 Putative peptidoglycan binding domain VV93_RS17680 PF03710 Glutamate-ammonia ligase adenylyltransferase VV93_RS17680 PF08335 GlnD PII-uridylyltransferase VV93_RS17710 PF03989 DNA gyrase C-terminal domain, beta-propeller VV93_RS17710 PF00521 DNA gyrase/topoisomerase IV, subunit A VV93_RS17815 PF01795 MraW methylase family VV93_RS17830 PF03717 Penicillin-binding Protein dimerisation domain VV93_RS17830 PF00905 Penicillin binding protein transpeptidase domain VV93_RS17840 PF02875 Mur ligase family, glutamate ligase domain VV93_RS17840 PF01225 Mur ligase family, catalytic domain VV93_RS17840 PF08245 Mur ligase middle domain VV93_RS17865 PF04101 Glycosyltransferase family 28 C-terminal domain VV93_RS17865 PF03033 Glycosyltransferase family 28 N-terminal domain VV93_RS17905 PF01043 SecA preprotein cross-linking domain VV93_RS17905 PF07517 SecA DEAD-like domain VV93_RS17905 PF02810 SEC-C motif VV93_RS17905 PF07516 SecA Wing and Scaffold domain VV93_RS17920 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VV93_RS17920 PF00117 Glutamine amidotransferase class-I VV93_RS17925 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VV93_RS17925 PF02142 MGS-like domain VV93_RS17925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VV93_RS17985 PF04898 Glutamate synthase central domain VV93_RS17985 PF01645 Conserved region in glutamate synthase VV93_RS17985 PF01493 GXGXG motif VV93_RS17985 PF00310 Glutamine amidotransferases class-II VV93_RS18010 PF04898 Glutamate synthase central domain VV93_RS18010 PF01645 Conserved region in glutamate synthase VV93_RS18010 PF01493 GXGXG motif VV93_RS18010 PF00310 Glutamine amidotransferases class-II VV93_RS18130 PF13098 Thioredoxin-like domain VV93_RS18130 PF10411 Disulfide bond isomerase protein N-terminus VV93_RS18355 PF10431 C-terminal, D2-small domain, of ClpB protein VV93_RS18355 PF17871 AAA lid domain VV93_RS18355 PF07724 AAA domain (Cdc48 subfamily) VV93_RS18355 PF02861 Clp amino terminal domain, pathogenicity island component VV93_RS18355 PF00004 ATPase family associated with various cellular activities (AAA) VV93_RS18455 PF00145 C-5 cytosine-specific DNA methylase VV93_RS18945 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VV93_RS18945 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VV93_RS18945 PF02769 AIR synthase related protein, C-terminal domain VV93_RS19005 PF00696 Amino acid kinase family VV93_RS19005 PF01472 PUA domain VV93_RS19250 PF13603 Leucyl-tRNA synthetase, Domain 2 VV93_RS19250 PF08264 Anticodon-binding domain of tRNA VV93_RS19250 PF00133 tRNA synthetases class I (I, L, M and V) VV93_RS19340 PF06071 Protein of unknown function (DUF933) VV93_RS19340 PF01926 50S ribosome-binding GTPase VV93_RS19445 PF00403 Heavy-metal-associated domain VV93_RS19525 PF00460 Flagella basal body rod protein VV93_RS19525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VV93_RS19720 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 VV93_RS19720 PF02378 Phosphotransferase system, EIIC VV93_RS19720 PF00367 phosphotransferase system, EIIB VV93_RS19730 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VV93_RS19730 PF00749 tRNA synthetases class I (E and Q), catalytic domain VV93_RS19780 PF00285 Citrate synthase, C-terminal domain VV93_RS19865 PF13307 Helicase C-terminal domain VV93_RS19865 PF04851 Type III restriction enzyme, res subunit VV93_RS19970 PF00221 Aromatic amino acid lyase VV93_RS20090 PF03480 Bacterial extracellular solute-binding protein, family 7 VV93_RS20245 PF00990 Diguanylate cyclase, GGDEF domain VV93_RS20245 PF13426 PAS domain VV93_RS20245 PF00563 EAL domain VV93_RS20335 PF01751 Toprim domain VV93_RS20335 PF01131 DNA topoisomerase VV93_RS20535 PF00994 Probable molybdopterin binding domain VV93_RS20670 PF03104 DNA polymerase family B, exonuclease domain VV93_RS20670 PF00136 DNA polymerase family B VV93_RS20710 PF00282 Pyridoxal-dependent decarboxylase conserved domain VV93_RS20735 PF00994 Probable molybdopterin binding domain VV93_RS20735 PF02464 Competence-damaged protein VV93_RS20765 PF00317 Ribonucleotide reductase, all-alpha domain VV93_RS20765 PF02867 Ribonucleotide reductase, barrel domain VV93_RS20765 PF03477 ATP cone domain VV93_RS20790 PF00521 DNA gyrase/topoisomerase IV, subunit A VV93_RS20790 PF03989 DNA gyrase C-terminal domain, beta-propeller VV93_RS20850 PF09334 tRNA synthetases class I (M) VV93_RS20850 PF01588 Putative tRNA binding domain VV93_RS20855 PF10609 NUBPL iron-transfer P-loop NTPase VV93_RS21020 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VV93_RS21020 PF14579 Helix-hairpin-helix motif VV93_RS21020 PF02811 PHP domain VV93_RS21020 PF01336 OB-fold nucleic acid binding domain VV93_RS21020 PF07733 Bacterial DNA polymerase III alpha NTPase domain VV93_RS21040 PF08496 Peptidase family S49 N-terminal VV93_RS21040 PF01343 Peptidase family S49 VV93_RS21050 PF00575 S1 RNA binding domain VV93_RS21095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle VV93_RS21430 PF00873 AcrB/AcrD/AcrF family VV93_RS21575 PF00999 Sodium/hydrogen exchanger family VV93_RS21900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VV93_RS21975 PF13416 Bacterial extracellular solute-binding protein VV93_RS21980 PF13416 Bacterial extracellular solute-binding protein VV93_RS21985 PF00072 Response regulator receiver domain VV93_RS22050 PF01970 Tripartite tricarboxylate transporter TctA family VV93_RS22540 PF03572 Peptidase family S41 VV93_RS22540 PF00595 PDZ domain VV93_RS22540 PF11818 C-terminal domain of tail specific protease (DUF3340) VV93_RS22540 PF17804 Tail specific protease N-terminal domain VV93_RS22570 PF05088 Bacterial NAD-glutamate dehydrogenase VV93_RS22600 PF10672 S-adenosylmethionine-dependent methyltransferase VV93_RS22600 PF02926 THUMP domain VV93_RS22600 PF01170 Putative RNA methylase family UPF0020 VV93_RS23030 PF11638 DnaA N-terminal domain VV93_RS23030 PF00308 Bacterial dnaA protein VV93_RS23030 PF08299 Bacterial dnaA protein helix-turn-helix VV93_RS23060 PF00156 Phosphoribosyl transferase domain VV93_RS23065 PF13439 Glycosyltransferase Family 4 VV93_RS23065 PF00534 Glycosyl transferases group 1 VV93_RS23085 PF02371 Transposase IS116/IS110/IS902 family VV93_RS23085 PF01548 Transposase VV93_RS23090 PF07963 Prokaryotic N-terminal methylation motif