locus-tag class description AL549_RS00030 PF02540 NAD synthase AL549_RS00035 PF03476 MOSC N-terminal beta barrel domain AL549_RS00035 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_RS00035 PF03476 MOSC N-terminal beta barrel domain AL549_RS00035 PF03473 MOSC domain AL549_RS00035 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_RS00035 PF03473 MOSC domain AL549_RS00040 PF01979 Amidohydrolase family AL549_RS00045 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00045 PF17151 Periplasmic sensor domain AL549_RS00050 PF05661 Protein of unknown function (DUF808) AL549_RS00080 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS00085 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS00085 PF14785 Maltose transport system permease protein MalF P2 domain AL549_RS00090 PF01547 Bacterial extracellular solute-binding protein AL549_RS00095 PF08402 TOBE domain AL549_RS00095 PF00005 ABC transporter AL549_RS00100 PF02397 Bacterial sugar transferase AL549_RS00110 PF02563 Polysaccharide biosynthesis/export protein AL549_RS00110 PF10531 SLBB domain AL549_RS00115 PF13807 G-rich domain on putative tyrosine kinase AL549_RS00115 PF13614 AAA domain AL549_RS00115 PF02706 Chain length determinant protein AL549_RS00120 PF13439 Glycosyltransferase Family 4 AL549_RS00120 PF00534 Glycosyl transferases group 1 AL549_RS00130 PF13439 Glycosyltransferase Family 4 AL549_RS00130 PF00534 Glycosyl transferases group 1 AL549_RS00145 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS00150 PF00005 ABC transporter AL549_RS00150 PF00664 ABC transporter transmembrane region AL549_RS00160 PF00196 Bacterial regulatory proteins, luxR family AL549_RS00165 PF00196 Bacterial regulatory proteins, luxR family AL549_RS00175 PF02743 Cache domain AL549_RS00175 PF00672 HAMP domain AL549_RS00175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS00180 PF07726 ATPase family associated with various cellular activities (AAA) AL549_RS00180 PF17863 AAA lid domain AL549_RS00185 PF01882 Protein of unknown function DUF58 AL549_RS00200 PF07584 Aerotolerance regulator N-terminal AL549_RS00200 PF00092 von Willebrand factor type A domain AL549_RS00210 PF00360 Phytochrome region AL549_RS00210 PF00563 EAL domain AL549_RS00210 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00210 PF01590 GAF domain AL549_RS00215 PF00005 ABC transporter AL549_RS00220 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS00225 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS00230 PF12849 PBP superfamily domain AL549_RS00235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS00235 PF12729 Four helix bundle sensory module for signal transduction AL549_RS00235 PF00672 HAMP domain AL549_RS00240 PF00672 HAMP domain AL549_RS00240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS00240 PF02743 Cache domain AL549_RS00255 PF07715 TonB-dependent Receptor Plug Domain AL549_RS00255 PF00593 TonB dependent receptor AL549_RS00260 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL549_RS00260 PF00326 Prolyl oligopeptidase family AL549_RS00265 PF00271 Helicase conserved C-terminal domain AL549_RS00265 PF00270 DEAD/DEAH box helicase AL549_RS00275 PF17969 L,D-transpeptidase C-terminal domain AL549_RS00275 PF03734 L,D-transpeptidase catalytic domain AL549_RS00275 PF01476 LysM domain AL549_RS00280 PF00875 DNA photolyase AL549_RS00280 PF03441 FAD binding domain of DNA photolyase AL549_RS00285 PF13411 MerR HTH family regulatory protein AL549_RS00290 PF08349 Protein of unknown function (DUF1722) AL549_RS00295 PF01048 Phosphorylase superfamily AL549_RS00310 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00315 PF11742 Protein of unknown function (DUF3302) AL549_RS00320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_RS00320 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS00325 PF07155 ECF-type riboflavin transporter, S component AL549_RS00330 PF12558 ATP-binding cassette cobalt transporter AL549_RS00330 PF00005 ABC transporter AL549_RS00345 PF07676 WD40-like Beta Propeller Repeat AL549_RS00345 PF03572 Peptidase family S41 AL549_RS00345 PF14684 Tricorn protease C1 domain AL549_RS00345 PF14685 Tricorn protease PDZ domain AL549_RS00350 PF13302 Acetyltransferase (GNAT) domain AL549_RS00360 PF07238 PilZ domain AL549_RS00360 PF12945 Flagellar protein YcgR AL549_RS00365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS00365 PF00672 HAMP domain AL549_RS00375 PF00924 Mechanosensitive ion channel AL549_RS00380 PF00194 Eukaryotic-type carbonic anhydrase AL549_RS00385 PF12849 PBP superfamily domain AL549_RS00395 PF02321 Outer membrane efflux protein AL549_RS00400 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS00405 PF00664 ABC transporter transmembrane region AL549_RS00405 PF03412 Peptidase C39 family AL549_RS00405 PF00005 ABC transporter AL549_RS00415 PF04076 Bacterial OB fold (BOF) protein AL549_RS00420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS00420 PF00072 Response regulator receiver domain AL549_RS00420 PF09456 RcsC Alpha-Beta-Loop (ABL) AL549_RS00420 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS00425 PF00563 EAL domain AL549_RS00425 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00425 PF03707 Bacterial signalling protein N terminal repeat AL549_RS00430 PF00072 Response regulator receiver domain AL549_RS00430 PF00196 Bacterial regulatory proteins, luxR family AL549_RS00435 PF03707 Bacterial signalling protein N terminal repeat AL549_RS00435 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00435 PF00563 EAL domain AL549_RS00440 PF00072 Response regulator receiver domain AL549_RS00440 PF00196 Bacterial regulatory proteins, luxR family AL549_RS00450 PF01593 Flavin containing amine oxidoreductase AL549_RS00460 PF03466 LysR substrate binding domain AL549_RS00460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00480 PF08212 Lipocalin-like domain AL549_RS00530 PF00107 Zinc-binding dehydrogenase AL549_RS00530 PF08240 Alcohol dehydrogenase GroES-like domain AL549_RS00535 PF00155 Aminotransferase class I and II AL549_RS00540 PF00657 GDSL-like Lipase/Acylhydrolase AL549_RS00545 PF00082 Subtilase family AL549_RS00545 PF05922 Peptidase inhibitor I9 AL549_RS00555 PF07690 Major Facilitator Superfamily AL549_RS00560 PF03466 LysR substrate binding domain AL549_RS00560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_RS00580 PF00199 Catalase AL549_RS00580 PF06628 Catalase-related immune-responsive AL549_RS00590 PF00080 Copper/zinc superoxide dismutase (SODC) AL549_RS00610 PF01966 HD domain AL549_RS00620 PF03466 LysR substrate binding domain AL549_RS00620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00625 PF01906 Putative heavy-metal-binding AL549_RS00635 PF00563 EAL domain AL549_RS00635 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00635 PF03707 Bacterial signalling protein N terminal repeat AL549_RS00645 PF07715 TonB-dependent Receptor Plug Domain AL549_RS00645 PF00593 TonB dependent receptor AL549_RS00650 PF13416 Bacterial extracellular solute-binding protein AL549_RS00655 PF00056 lactate/malate dehydrogenase, NAD binding domain AL549_RS00655 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL549_RS00675 PF07690 Major Facilitator Superfamily AL549_RS00685 PF10928 Protein of unknown function (DUF2810) AL549_RS00735 PF04013 Putative SAM-dependent RNA methyltransferase AL549_RS00740 PF08543 Phosphomethylpyrimidine kinase AL549_RS00745 PF01569 PAP2 superfamily AL549_RS00770 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL549_RS00775 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL549_RS00780 PF01323 DSBA-like thioredoxin domain AL549_RS00800 PF03466 LysR substrate binding domain AL549_RS00800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00805 PF00106 short chain dehydrogenase AL549_RS00810 PF03466 LysR substrate binding domain AL549_RS00810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00820 PF00072 Response regulator receiver domain AL549_RS00820 PF00486 Transcriptional regulatory protein, C terminal AL549_RS00825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS00825 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS00825 PF00672 HAMP domain AL549_RS00830 PF01219 Prokaryotic diacylglycerol kinase AL549_RS00835 PF08019 Phosphoethanolamine transferase EptA/EptB AL549_RS00835 PF00884 Sulfatase AL549_RS00840 PF00884 Sulfatase AL549_RS00850 PF16657 Maltogenic Amylase, C-terminal domain AL549_RS00850 PF02903 Alpha amylase, N-terminal ig-like domain AL549_RS00850 PF00128 Alpha amylase, catalytic domain AL549_RS00870 PF08448 PAS fold AL549_RS00870 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00880 PF00392 Bacterial regulatory proteins, gntR family AL549_RS00880 PF00155 Aminotransferase class I and II AL549_RS00910 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AL549_RS00915 PF05958 tRNA (Uracil-5-)-methyltransferase AL549_RS00920 PF00881 Nitroreductase family AL549_RS00930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00930 PF03466 LysR substrate binding domain AL549_RS00960 PF00375 Sodium:dicarboxylate symporter family AL549_RS00965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00965 PF03466 LysR substrate binding domain AL549_RS00970 PF00764 Arginosuccinate synthase AL549_RS00990 PF01638 HxlR-like helix-turn-helix AL549_RS00995 PF03466 LysR substrate binding domain AL549_RS00995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01015 PF01048 Phosphorylase superfamily AL549_RS01020 PF04973 Nicotinamide mononucleotide transporter AL549_RS01045 PF01752 Collagenase AL549_RS01045 PF08453 Peptidase family M9 N-terminal AL549_RS01045 PF04151 Bacterial pre-peptidase C-terminal domain AL549_RS01050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01055 PF01048 Phosphorylase superfamily AL549_RS01060 PF03466 LysR substrate binding domain AL549_RS01060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01070 PF00384 Molybdopterin oxidoreductase AL549_RS01070 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS01070 PF01568 Molydopterin dinucleotide binding domain AL549_RS01070 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL549_RS01070 PF12838 4Fe-4S dicluster domain AL549_RS01100 PF00155 Aminotransferase class I and II AL549_RS01100 PF00392 Bacterial regulatory proteins, gntR family AL549_RS01115 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_RS01125 PF12833 Helix-turn-helix domain AL549_RS01130 PF02378 Phosphotransferase system, EIIC AL549_RS01130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_RS01130 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_RS01135 PF01238 Phosphomannose isomerase type I AL549_RS01155 PF18113 Rubredoxin binding C-terminal domain AL549_RS01155 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS01160 PF00753 Metallo-beta-lactamase superfamily AL549_RS01160 PF00258 Flavodoxin AL549_RS01160 PF00301 Rubredoxin AL549_RS01165 PF00158 Sigma-54 interaction domain AL549_RS01165 PF01590 GAF domain AL549_RS01185 PF12833 Helix-turn-helix domain AL549_RS01190 PF00593 TonB dependent receptor AL549_RS01190 PF07715 TonB-dependent Receptor Plug Domain AL549_RS01200 PF11953 Domain of unknown function (DUF3470) AL549_RS01200 PF00037 4Fe-4S binding domain AL549_RS01205 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL549_RS01205 PF00588 SpoU rRNA Methylase family AL549_RS01220 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL549_RS01220 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL549_RS01225 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL549_RS01225 PF00703 Glycosyl hydrolases family 2 AL549_RS01225 PF16353 Domain of unknown function(DUF4981) AL549_RS01225 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL549_RS01225 PF02929 Beta galactosidase small chain AL549_RS01230 PF13407 Periplasmic binding protein domain AL549_RS01235 PF00005 ABC transporter AL549_RS01240 PF02653 Branched-chain amino acid transport system / permease component AL549_RS01245 PF00356 Bacterial regulatory proteins, lacI family AL549_RS01260 PF00873 AcrB/AcrD/AcrF family AL549_RS01265 PF00563 EAL domain AL549_RS01265 PF03707 Bacterial signalling protein N terminal repeat AL549_RS01265 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS01270 PF00849 RNA pseudouridylate synthase AL549_RS01305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_RS01305 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS01315 PF01554 MatE AL549_RS01320 PF14310 Fibronectin type III-like domain AL549_RS01320 PF00933 Glycosyl hydrolase family 3 N terminal domain AL549_RS01320 PF01915 Glycosyl hydrolase family 3 C-terminal domain AL549_RS01325 PF12833 Helix-turn-helix domain AL549_RS01330 PF02264 LamB porin AL549_RS01335 PF00722 Glycosyl hydrolases family 16 AL549_RS01345 PF00356 Bacterial regulatory proteins, lacI family AL549_RS01355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS01355 PF00005 ABC transporter AL549_RS01360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS01360 PF00005 ABC transporter AL549_RS01365 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS01370 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS01375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_RS01385 PF00356 Bacterial regulatory proteins, lacI family AL549_RS01390 PF00005 ABC transporter AL549_RS01390 PF08402 TOBE domain AL549_RS01395 PF00232 Glycosyl hydrolase family 1 AL549_RS01400 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS01405 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS01415 PF00356 Bacterial regulatory proteins, lacI family AL549_RS01420 PF02264 LamB porin AL549_RS01435 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS01440 PF00072 Response regulator receiver domain AL549_RS01440 PF00486 Transcriptional regulatory protein, C terminal AL549_RS01445 PF08521 Two-component sensor kinase N-terminal AL549_RS01445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS01445 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS01455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01455 PF03466 LysR substrate binding domain AL549_RS01465 PF00675 Insulinase (Peptidase family M16) AL549_RS01465 PF05193 Peptidase M16 inactive domain AL549_RS01470 PF02690 Na+/Pi-cotransporter AL549_RS01475 PF01966 HD domain AL549_RS01480 PF02798 Glutathione S-transferase, N-terminal domain AL549_RS01485 PF00171 Aldehyde dehydrogenase family AL549_RS01500 PF02743 Cache domain AL549_RS01500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS01500 PF00672 HAMP domain AL549_RS01520 PF01470 Pyroglutamyl peptidase AL549_RS01530 PF01037 Lrp/AsnC ligand binding domain AL549_RS01535 PF01810 LysE type translocator AL549_RS01540 PF18693 TRAM domain AL549_RS01540 PF00919 Uncharacterized protein family UPF0004 AL549_RS01540 PF04055 Radical SAM superfamily AL549_RS01545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS01545 PF16591 Helical bimodular sensor domain AL549_RS01545 PF00672 HAMP domain AL549_RS01550 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL549_RS01550 PF02806 Alpha amylase, C-terminal all-beta domain AL549_RS01550 PF00128 Alpha amylase, catalytic domain AL549_RS01555 PF02446 4-alpha-glucanotransferase AL549_RS01560 PF00343 Carbohydrate phosphorylase AL549_RS01565 PF17874 MalT-like TPR region AL549_RS01565 PF00196 Bacterial regulatory proteins, luxR family AL549_RS01580 PF02630 SCO1/SenC AL549_RS01585 PF04314 Copper chaperone PCu(A)C AL549_RS01590 PF03193 RsgA GTPase AL549_RS01595 PF00375 Sodium:dicarboxylate symporter family AL549_RS01600 PF08543 Phosphomethylpyrimidine kinase AL549_RS01605 PF13520 Amino acid permease AL549_RS01610 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL549_RS01610 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL549_RS01610 PF01276 Orn/Lys/Arg decarboxylase, major domain AL549_RS01625 PF17967 Pullulanase N2 domain AL549_RS01625 PF18494 Pullulanase Ins domain AL549_RS01625 PF03714 Bacterial pullanase-associated domain AL549_RS01625 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL549_RS01625 PF11852 Domain of unknown function (DUF3372) AL549_RS01635 PF16657 Maltogenic Amylase, C-terminal domain AL549_RS01635 PF02903 Alpha amylase, N-terminal ig-like domain AL549_RS01635 PF00128 Alpha amylase, catalytic domain AL549_RS01640 PF01547 Bacterial extracellular solute-binding protein AL549_RS01650 PF07148 Maltose operon periplasmic protein precursor (MalM) AL549_RS01655 PF02264 LamB porin AL549_RS01660 PF00128 Alpha amylase, catalytic domain AL549_RS01660 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL549_RS01665 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS01665 PF17158 Membrane-associated sensor, integral membrane domain AL549_RS01670 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS01670 PF00563 EAL domain AL549_RS01680 PF02678 Pirin AL549_RS01680 PF05726 Pirin C-terminal cupin domain AL549_RS01685 PF06865 Pyrimidine/purine nucleoside phosphorylase AL549_RS01695 PF08329 Chitinase A, N-terminal domain AL549_RS01695 PF00704 Glycosyl hydrolases family 18 AL549_RS01705 PF08361 MAATS-type transcriptional repressor, C-terminal region AL549_RS01705 PF00440 Bacterial regulatory proteins, tetR family AL549_RS01715 PF03600 Citrate transporter AL549_RS01730 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL549_RS01735 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL549_RS01735 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL549_RS01740 PF00730 HhH-GPD superfamily base excision DNA repair protein AL549_RS01740 PF06029 AlkA N-terminal domain AL549_RS01750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01750 PF03466 LysR substrate binding domain AL549_RS01760 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL549_RS01760 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL549_RS01775 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL549_RS01785 PF03616 Sodium/glutamate symporter AL549_RS01790 PF03616 Sodium/glutamate symporter AL549_RS01800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS01800 PF17200 Single Cache domain 2 AL549_RS01800 PF00672 HAMP domain AL549_RS01805 PF04397 LytTr DNA-binding domain AL549_RS01805 PF00072 Response regulator receiver domain AL549_RS01810 PF06580 Histidine kinase AL549_RS01810 PF07694 5TMR of 5TMR-LYT AL549_RS01810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS01825 PF02687 FtsX-like permease family AL549_RS01825 PF12704 MacB-like periplasmic core domain AL549_RS01830 PF00005 ABC transporter AL549_RS01840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01840 PF03466 LysR substrate binding domain AL549_RS01850 PF01709 Transcriptional regulator AL549_RS01860 PF17149 Periplasmic sensor domain found in signal transduction proteins AL549_RS01860 PF00672 HAMP domain AL549_RS01860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS01860 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS01860 PF01627 Hpt domain AL549_RS01860 PF00072 Response regulator receiver domain AL549_RS01870 PF01609 Transposase DDE domain AL549_RS01870 PF13006 Insertion element 4 transposase N-terminal AL549_RS01875 PF00925 GTP cyclohydrolase II AL549_RS01875 PF08719 Domain of unknown function (DUF1768) AL549_RS01885 PF00005 ABC transporter AL549_RS01885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS01890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS01890 PF00005 ABC transporter AL549_RS01905 PF13614 AAA domain AL549_RS01905 PF18607 ParA helix turn helix domain AL549_RS01910 PF08775 ParB family AL549_RS01910 PF02195 ParB-like nuclease domain AL549_RS01915 PF05127 Helicase AL549_RS01915 PF13718 GNAT acetyltransferase 2 AL549_RS01925 PF00072 Response regulator receiver domain AL549_RS01930 PF02895 Signal transducing histidine kinase, homodimeric domain AL549_RS01930 PF01627 Hpt domain AL549_RS01930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS01930 PF01584 CheW-like domain AL549_RS01930 PF09078 CheY binding AL549_RS01935 PF01584 CheW-like domain AL549_RS01940 PF01584 CheW-like domain AL549_RS01945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS01945 PF02203 Tar ligand binding domain homologue AL549_RS01945 PF00672 HAMP domain AL549_RS01950 PF03705 CheR methyltransferase, all-alpha domain AL549_RS01950 PF01739 CheR methyltransferase, SAM binding domain AL549_RS01955 PF03975 CheD chemotactic sensory transduction AL549_RS01960 PF00072 Response regulator receiver domain AL549_RS01960 PF01339 CheB methylesterase AL549_RS01965 PF02203 Tar ligand binding domain homologue AL549_RS01965 PF00672 HAMP domain AL549_RS01965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS01975 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS01975 PF00072 Response regulator receiver domain AL549_RS01995 PF02223 Thymidylate kinase AL549_RS02010 PF01039 Carboxyl transferase domain AL549_RS02010 PF17848 Acetyl-coA carboxylase zinc finger domain AL549_RS02015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02015 PF03466 LysR substrate binding domain AL549_RS02020 PF04151 Bacterial pre-peptidase C-terminal domain AL549_RS02020 PF08453 Peptidase family M9 N-terminal AL549_RS02020 PF01752 Collagenase AL549_RS02025 PF00300 Histidine phosphatase superfamily (branch 1) AL549_RS02030 PF00563 EAL domain AL549_RS02030 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS02030 PF01590 GAF domain AL549_RS02030 PF00989 PAS fold AL549_RS02040 PF00367 phosphotransferase system, EIIB AL549_RS02040 PF02378 Phosphotransferase system, EIIC AL549_RS02045 PF13580 SIS domain AL549_RS02050 PF01418 Helix-turn-helix domain, rpiR family AL549_RS02050 PF01380 SIS domain AL549_RS02055 PF01189 16S rRNA methyltransferase RsmB/F AL549_RS02055 PF01029 NusB family AL549_RS02065 PF12464 Maltose acetyltransferase AL549_RS02065 PF14602 Hexapeptide repeat of succinyl-transferase AL549_RS02070 PF00166 Chaperonin 10 Kd subunit AL549_RS02075 PF00118 TCP-1/cpn60 chaperonin family AL549_RS02090 PF00664 ABC transporter transmembrane region AL549_RS02090 PF00005 ABC transporter AL549_RS02090 PF03412 Peptidase C39 family AL549_RS02105 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS02110 PF02954 Bacterial regulatory protein, Fis family AL549_RS02110 PF00158 Sigma-54 interaction domain AL549_RS02110 PF00072 Response regulator receiver domain AL549_RS02115 PF02743 Cache domain AL549_RS02115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS02115 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS02120 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL549_RS02120 PF01243 Pyridoxamine 5'-phosphate oxidase AL549_RS02130 PF12833 Helix-turn-helix domain AL549_RS02135 PF00171 Aldehyde dehydrogenase family AL549_RS02135 PF01619 Proline dehydrogenase AL549_RS02135 PF14850 DNA-binding domain of Proline dehydrogenase AL549_RS02135 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL549_RS02145 PF00474 Sodium:solute symporter family AL549_RS02150 PF01037 Lrp/AsnC ligand binding domain AL549_RS02160 PF02278 Polysaccharide lyase family 8, super-sandwich domain AL549_RS02160 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AL549_RS02160 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain AL549_RS02165 PF00884 Sulfatase AL549_RS02165 PF16385 Domain of unknown function AL549_RS02170 PF00884 Sulfatase AL549_RS02175 PF04055 Radical SAM superfamily AL549_RS02175 PF13186 Iron-sulfur cluster-binding domain AL549_RS02180 PF16347 Domain of unknown function (DUF4976) AL549_RS02190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_RS02195 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS02200 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_RS02200 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS02205 PF00005 ABC transporter AL549_RS02205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS02210 PF00672 HAMP domain AL549_RS02210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS02225 PF00916 Sulfate permease family AL549_RS02225 PF01740 STAS domain AL549_RS02230 PF16363 GDP-mannose 4,6 dehydratase AL549_RS02235 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL549_RS02235 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL549_RS02245 PF07470 Glycosyl Hydrolase Family 88 AL549_RS02250 PF17385 Lacto-N-biose phosphorylase central domain AL549_RS02250 PF17386 Lacto-N-biose phosphorylase C-terminal domain AL549_RS02250 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain AL549_RS02255 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain AL549_RS02255 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AL549_RS02255 PF02278 Polysaccharide lyase family 8, super-sandwich domain AL549_RS02260 PF00005 ABC transporter AL549_RS02260 PF00664 ABC transporter transmembrane region AL549_RS02275 PF01261 Xylose isomerase-like TIM barrel AL549_RS02280 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL549_RS02290 PF00596 Class II Aldolase and Adducin N-terminal domain AL549_RS02295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_RS02300 PF03611 PTS system sugar-specific permease component AL549_RS02305 PF08220 DeoR-like helix-turn-helix domain AL549_RS02305 PF00455 DeoR C terminal sensor domain AL549_RS02315 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL549_RS02320 PF13417 Glutathione S-transferase, N-terminal domain AL549_RS02320 PF04399 Glutaredoxin 2, C terminal domain AL549_RS02330 PF03466 LysR substrate binding domain AL549_RS02330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02335 PF10688 Bacterial inner membrane protein AL549_RS02340 PF01081 KDPG and KHG aldolase AL549_RS02345 PF00294 pfkB family carbohydrate kinase AL549_RS02350 PF02614 Glucuronate isomerase AL549_RS02355 PF08125 Mannitol dehydrogenase C-terminal domain AL549_RS02355 PF01232 Mannitol dehydrogenase Rossmann domain AL549_RS02360 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL549_RS02365 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL549_RS02370 PF03480 Bacterial extracellular solute-binding protein, family 7 AL549_RS02375 PF07729 FCD domain AL549_RS02375 PF00392 Bacterial regulatory proteins, gntR family AL549_RS02380 PF03786 D-mannonate dehydratase (UxuA) AL549_RS02385 PF00271 Helicase conserved C-terminal domain AL549_RS02385 PF00270 DEAD/DEAH box helicase AL549_RS02390 PF00155 Aminotransferase class I and II AL549_RS02395 PF03553 Na+/H+ antiporter family AL549_RS02400 PF00356 Bacterial regulatory proteins, lacI family AL549_RS02405 PF00857 Isochorismatase family AL549_RS02410 PF01276 Orn/Lys/Arg decarboxylase, major domain AL549_RS02410 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL549_RS02415 PF00892 EamA-like transporter family AL549_RS02425 PF03473 MOSC domain AL549_RS02425 PF03475 3-alpha domain AL549_RS02445 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL549_RS02445 PF02056 Family 4 glycosyl hydrolase AL549_RS02450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02450 PF03466 LysR substrate binding domain AL549_RS02465 PF12852 Cupin AL549_RS02465 PF12833 Helix-turn-helix domain AL549_RS02470 PF00462 Glutaredoxin AL549_RS02485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS02485 PF00672 HAMP domain AL549_RS02505 PF01625 Peptide methionine sulfoxide reductase AL549_RS02510 PF01641 SelR domain AL549_RS02535 PF00753 Metallo-beta-lactamase superfamily AL549_RS02535 PF14864 Alkyl sulfatase C-terminal AL549_RS02535 PF14863 Alkyl sulfatase dimerisation AL549_RS02540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02540 PF03466 LysR substrate binding domain AL549_RS02545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL549_RS02545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL549_RS02550 PF12833 Helix-turn-helix domain AL549_RS02555 PF00892 EamA-like transporter family AL549_RS02560 PF08220 DeoR-like helix-turn-helix domain AL549_RS02560 PF00455 DeoR C terminal sensor domain AL549_RS02565 PF00455 DeoR C terminal sensor domain AL549_RS02565 PF08220 DeoR-like helix-turn-helix domain AL549_RS02570 PF08013 Tagatose 6 phosphate kinase AL549_RS02575 PF01380 SIS domain AL549_RS02580 PF03830 PTS system sorbose subfamily IIB component AL549_RS02585 PF03609 PTS system sorbose-specific iic component AL549_RS02590 PF03613 PTS system mannose/fructose/sorbose family IID component AL549_RS02595 PF03610 PTS system fructose IIA component AL549_RS02600 PF01979 Amidohydrolase family AL549_RS02605 PF01116 Fructose-bisphosphate aldolase class-II AL549_RS02610 PF00005 ABC transporter AL549_RS02610 PF12848 ABC transporter AL549_RS02615 PF00593 TonB dependent receptor AL549_RS02615 PF07715 TonB-dependent Receptor Plug Domain AL549_RS02625 PF01032 FecCD transport family AL549_RS02630 PF01497 Periplasmic binding protein AL549_RS02635 PF00005 ABC transporter AL549_RS02660 PF00005 ABC transporter AL549_RS02660 PF12704 MacB-like periplasmic core domain AL549_RS02660 PF02687 FtsX-like permease family AL549_RS02665 PF02687 FtsX-like permease family AL549_RS02665 PF12704 MacB-like periplasmic core domain AL549_RS02665 PF00005 ABC transporter AL549_RS02670 PF00005 ABC transporter AL549_RS02670 PF02687 FtsX-like permease family AL549_RS02670 PF12704 MacB-like periplasmic core domain AL549_RS02675 PF02811 PHP domain AL549_RS02675 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL549_RS02675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL549_RS02675 PF14579 Helix-hairpin-helix motif AL549_RS02675 PF00929 Exonuclease AL549_RS02675 PF11490 DNA polymerase III polC-type N-terminus II AL549_RS02695 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS02695 PF17158 Membrane-associated sensor, integral membrane domain AL549_RS02710 PF01717 Cobalamin-independent synthase, Catalytic domain AL549_RS02710 PF08267 Cobalamin-independent synthase, N-terminal domain AL549_RS02720 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS02720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_RS02725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02725 PF03466 LysR substrate binding domain AL549_RS02730 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS02730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS02730 PF00672 HAMP domain AL549_RS02735 PF00072 Response regulator receiver domain AL549_RS02735 PF00486 Transcriptional regulatory protein, C terminal AL549_RS02745 PF14863 Alkyl sulfatase dimerisation AL549_RS02745 PF14864 Alkyl sulfatase C-terminal AL549_RS02745 PF00753 Metallo-beta-lactamase superfamily AL549_RS02755 PF02743 Cache domain AL549_RS02755 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS02755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS02760 PF00072 Response regulator receiver domain AL549_RS02760 PF02954 Bacterial regulatory protein, Fis family AL549_RS02760 PF00158 Sigma-54 interaction domain AL549_RS02775 PF01266 FAD dependent oxidoreductase AL549_RS02785 PF00072 Response regulator receiver domain AL549_RS02790 PF00672 HAMP domain AL549_RS02790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS02790 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS02790 PF01627 Hpt domain AL549_RS02790 PF00072 Response regulator receiver domain AL549_RS02790 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_RS02795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS02795 PF12729 Four helix bundle sensory module for signal transduction AL549_RS02795 PF00672 HAMP domain AL549_RS02805 PF13599 Pentapeptide repeats (9 copies) AL549_RS02815 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_RS02815 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_RS02820 PF04151 Bacterial pre-peptidase C-terminal domain AL549_RS02820 PF03413 Peptidase propeptide and YPEB domain AL549_RS02820 PF01447 Thermolysin metallopeptidase, catalytic domain AL549_RS02820 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL549_RS02820 PF07504 Fungalysin/Thermolysin Propeptide Motif AL549_RS02850 PF00271 Helicase conserved C-terminal domain AL549_RS02850 PF00270 DEAD/DEAH box helicase AL549_RS02855 PF00561 alpha/beta hydrolase fold AL549_RS02860 PF00881 Nitroreductase family AL549_RS02870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02870 PF03466 LysR substrate binding domain AL549_RS02880 PF00970 Oxidoreductase FAD-binding domain AL549_RS02880 PF00175 Oxidoreductase NAD-binding domain AL549_RS02885 PF00892 EamA-like transporter family AL549_RS02890 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL549_RS02910 PF07690 Major Facilitator Superfamily AL549_RS02915 PF02311 AraC-like ligand binding domain AL549_RS02915 PF12833 Helix-turn-helix domain AL549_RS02930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02930 PF03466 LysR substrate binding domain AL549_RS02935 PF07519 Tannase and feruloyl esterase AL549_RS02945 PF06942 GlpM protein AL549_RS02950 PF00034 Cytochrome c AL549_RS02950 PF03150 Di-haem cytochrome c peroxidase AL549_RS02960 PF02001 Protein of unknown function DUF134 AL549_RS02975 PF00679 Elongation factor G C-terminus AL549_RS02975 PF14492 Elongation Factor G, domain II AL549_RS02975 PF03764 Elongation factor G, domain IV AL549_RS02975 PF00009 Elongation factor Tu GTP binding domain AL549_RS02975 PF03144 Elongation factor Tu domain 2 AL549_RS02980 PF00583 Acetyltransferase (GNAT) family AL549_RS02985 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS02985 PF17151 Periplasmic sensor domain AL549_RS03000 PF00672 HAMP domain AL549_RS03000 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS03000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS03005 PF00072 Response regulator receiver domain AL549_RS03005 PF00486 Transcriptional regulatory protein, C terminal AL549_RS03010 PF00367 phosphotransferase system, EIIB AL549_RS03010 PF02378 Phosphotransferase system, EIIC AL549_RS03020 PF00376 MerR family regulatory protein AL549_RS03020 PF09278 MerR, DNA binding AL549_RS03025 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AL549_RS03030 PF12833 Helix-turn-helix domain AL549_RS03035 PF01161 Phosphatidylethanolamine-binding protein AL549_RS03040 PF00293 NUDIX domain AL549_RS03045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS03045 PF00672 HAMP domain AL549_RS03045 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_RS03045 PF00072 Response regulator receiver domain AL549_RS03045 PF01627 Hpt domain AL549_RS03045 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS03055 PF13533 Biotin-lipoyl like AL549_RS03060 PF00873 AcrB/AcrD/AcrF family AL549_RS03070 PF00924 Mechanosensitive ion channel AL549_RS03090 PF00795 Carbon-nitrogen hydrolase AL549_RS03090 PF00583 Acetyltransferase (GNAT) family AL549_RS03115 PF01614 Bacterial transcriptional regulator AL549_RS03115 PF09339 IclR helix-turn-helix domain AL549_RS03125 PF10688 Bacterial inner membrane protein AL549_RS03130 PF07883 Cupin domain AL549_RS03150 PF00892 EamA-like transporter family AL549_RS03155 PF00294 pfkB family carbohydrate kinase AL549_RS03160 PF01081 KDPG and KHG aldolase AL549_RS03170 PF06917 Periplasmic pectate lyase AL549_RS03185 PF13229 Right handed beta helix region AL549_RS03190 PF00474 Sodium:solute symporter family AL549_RS03195 PF14583 Oligogalacturonate lyase AL549_RS03200 PF00128 Alpha amylase, catalytic domain AL549_RS03210 PF07670 Nucleoside recognition AL549_RS03215 PF07670 Nucleoside recognition AL549_RS03220 PF01546 Peptidase family M20/M25/M40 AL549_RS03220 PF07687 Peptidase dimerisation domain AL549_RS03255 PF01022 Bacterial regulatory protein, arsR family AL549_RS03260 PF01758 Sodium Bile acid symporter family AL549_RS03280 PF08019 Phosphoethanolamine transferase EptA/EptB AL549_RS03280 PF00884 Sulfatase AL549_RS03285 PF03466 LysR substrate binding domain AL549_RS03285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS03295 PF14863 Alkyl sulfatase dimerisation AL549_RS03295 PF14864 Alkyl sulfatase C-terminal AL549_RS03295 PF00753 Metallo-beta-lactamase superfamily AL549_RS03305 PF13533 Biotin-lipoyl like AL549_RS03315 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL549_RS03320 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL549_RS03320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL549_RS03325 PF00579 tRNA synthetases class I (W and Y) AL549_RS03325 PF01479 S4 domain AL549_RS03330 PF00072 Response regulator receiver domain AL549_RS03330 PF00196 Bacterial regulatory proteins, luxR family AL549_RS03335 PF02567 Phenazine biosynthesis-like protein AL549_RS03340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS03340 PF03466 LysR substrate binding domain AL549_RS03345 PF00043 Glutathione S-transferase, C-terminal domain AL549_RS03345 PF13417 Glutathione S-transferase, N-terminal domain AL549_RS03350 PF13407 Periplasmic binding protein domain AL549_RS03355 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS03355 PF03707 Bacterial signalling protein N terminal repeat AL549_RS03355 PF00563 EAL domain AL549_RS03360 PF02954 Bacterial regulatory protein, Fis family AL549_RS03360 PF01590 GAF domain AL549_RS03360 PF00158 Sigma-54 interaction domain AL549_RS03365 PF00171 Aldehyde dehydrogenase family AL549_RS03375 PF01595 Cyclin M transmembrane N-terminal domain AL549_RS03375 PF00571 CBS domain AL549_RS03375 PF03471 Transporter associated domain AL549_RS03380 PF12561 ToxR activated gene A lipoprotein domain AL549_RS03380 PF00041 Fibronectin type III domain AL549_RS03385 PF01327 Polypeptide deformylase AL549_RS03390 PF03611 PTS system sugar-specific permease component AL549_RS03400 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_RS03405 PF00356 Bacterial regulatory proteins, lacI family AL549_RS03410 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_RS03410 PF00175 Oxidoreductase NAD-binding domain AL549_RS03410 PF00970 Oxidoreductase FAD-binding domain AL549_RS03425 PF16326 ABC transporter C-terminal domain AL549_RS03425 PF12848 ABC transporter AL549_RS03425 PF00005 ABC transporter AL549_RS03430 PF03222 Tryptophan/tyrosine permease family AL549_RS03435 PF01212 Beta-eliminating lyase AL549_RS03445 PF00873 AcrB/AcrD/AcrF family AL549_RS03450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_RS03465 PF00753 Metallo-beta-lactamase superfamily AL549_RS03470 PF18030 RimK PreATP-grasp domain AL549_RS03470 PF08443 RimK-like ATP-grasp domain AL549_RS03475 PF18030 RimK PreATP-grasp domain AL549_RS03475 PF08443 RimK-like ATP-grasp domain AL549_RS03485 PF00501 AMP-binding enzyme AL549_RS03485 PF13193 AMP-binding enzyme C-terminal domain AL549_RS03485 PF00975 Thioesterase domain AL549_RS03485 PF00668 Condensation domain AL549_RS03485 PF00550 Phosphopantetheine attachment site AL549_RS03490 PF07715 TonB-dependent Receptor Plug Domain AL549_RS03495 PF01497 Periplasmic binding protein AL549_RS03505 PF00501 AMP-binding enzyme AL549_RS03505 PF13193 AMP-binding enzyme C-terminal domain AL549_RS03515 PF00550 Phosphopantetheine attachment site AL549_RS03515 PF00857 Isochorismatase family AL549_RS03520 PF04954 Siderophore-interacting protein AL549_RS03520 PF08021 Siderophore-interacting FAD-binding domain AL549_RS03525 PF00501 AMP-binding enzyme AL549_RS03525 PF13193 AMP-binding enzyme C-terminal domain AL549_RS03530 PF00425 chorismate binding enzyme AL549_RS03540 PF00793 DAHP synthetase I family AL549_RS03545 PF00975 Thioesterase domain AL549_RS03545 PF00550 Phosphopantetheine attachment site AL549_RS03545 PF13193 AMP-binding enzyme C-terminal domain AL549_RS03545 PF00668 Condensation domain AL549_RS03545 PF00501 AMP-binding enzyme AL549_RS03550 PF13193 AMP-binding enzyme C-terminal domain AL549_RS03550 PF00668 Condensation domain AL549_RS03550 PF00501 AMP-binding enzyme AL549_RS03550 PF00550 Phosphopantetheine attachment site AL549_RS03550 PF07993 Male sterility protein AL549_RS03555 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AL549_RS03555 PF01648 4'-phosphopantetheinyl transferase superfamily AL549_RS03570 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_RS03575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS03575 PF00672 HAMP domain AL549_RS03575 PF12729 Four helix bundle sensory module for signal transduction AL549_RS03585 PF13472 GDSL-like Lipase/Acylhydrolase family AL549_RS03585 PF17996 Carbohydrate esterase 2 N-terminal AL549_RS03590 PF00563 EAL domain AL549_RS03590 PF08448 PAS fold AL549_RS03590 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS03605 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS03610 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS03615 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_RS03620 PF00005 ABC transporter AL549_RS03625 PF04170 NlpE N-terminal domain AL549_RS03625 PF17185 NlpE C-terminal OB domain AL549_RS03640 PF02378 Phosphotransferase system, EIIC AL549_RS03680 PF07690 Major Facilitator Superfamily AL549_RS03700 PF02589 LUD domain AL549_RS03705 PF11870 Domain of unknown function (DUF3390) AL549_RS03705 PF13183 4Fe-4S dicluster domain AL549_RS03705 PF02589 LUD domain AL549_RS03710 PF02754 Cysteine-rich domain AL549_RS03715 PF02652 L-lactate permease AL549_RS03720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS03720 PF03466 LysR substrate binding domain AL549_RS03725 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL549_RS03725 PF00326 Prolyl oligopeptidase family AL549_RS03730 PF00005 ABC transporter AL549_RS03730 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS03745 PF07969 Amidohydrolase family AL549_RS03750 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AL549_RS03755 PF12833 Helix-turn-helix domain AL549_RS03760 PF00571 CBS domain AL549_RS03760 PF03448 MgtE intracellular N domain AL549_RS03760 PF01769 Divalent cation transporter AL549_RS03785 PF00486 Transcriptional regulatory protein, C terminal AL549_RS03785 PF00072 Response regulator receiver domain AL549_RS03790 PF00672 HAMP domain AL549_RS03790 PF16527 Two-component sensor protein CpxA, periplasmic domain AL549_RS03790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS03790 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS03800 PF00392 Bacterial regulatory proteins, gntR family AL549_RS03800 PF00155 Aminotransferase class I and II AL549_RS03805 PF13230 Glutamine amidotransferases class-II AL549_RS03810 PF13520 Amino acid permease AL549_RS03820 PF01037 Lrp/AsnC ligand binding domain AL549_RS03825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS03825 PF03466 LysR substrate binding domain AL549_RS03835 PF08534 Redoxin AL549_RS03835 PF00462 Glutaredoxin AL549_RS03840 PF00709 Adenylosuccinate synthetase AL549_RS03845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS03845 PF03466 LysR substrate binding domain AL549_RS03855 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL549_RS03855 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_RS03870 PF00072 Response regulator receiver domain AL549_RS03870 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_RS03870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS03870 PF01627 Hpt domain AL549_RS03870 PF00672 HAMP domain AL549_RS03870 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS03875 PF01554 MatE AL549_RS03880 PF04363 Protein of unknown function (DUF496) AL549_RS03890 PF04337 Protein of unknown function, DUF480 AL549_RS03895 PF01541 GIY-YIG catalytic domain AL549_RS03905 PF13407 Periplasmic binding protein domain AL549_RS03910 PF09308 LuxQ, periplasmic AL549_RS03910 PF00072 Response regulator receiver domain AL549_RS03910 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS03910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS03925 PF01037 Lrp/AsnC ligand binding domain AL549_RS03950 PF07549 SecD/SecF GG Motif AL549_RS03950 PF13721 SecD export protein N-terminal TM region AL549_RS03950 PF02355 Protein export membrane protein AL549_RS03955 PF02355 Protein export membrane protein AL549_RS03955 PF07549 SecD/SecF GG Motif AL549_RS03960 PF00106 short chain dehydrogenase AL549_RS03965 PF00108 Thiolase, N-terminal domain AL549_RS03965 PF02803 Thiolase, C-terminal domain AL549_RS03975 PF00561 alpha/beta hydrolase fold AL549_RS03975 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL549_RS03985 PF01979 Amidohydrolase family AL549_RS03990 PF00480 ROK family AL549_RS03995 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AL549_RS04000 PF03480 Bacterial extracellular solute-binding protein, family 7 AL549_RS04005 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL549_RS04010 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL549_RS04015 PF00701 Dihydrodipicolinate synthetase family AL549_RS04020 PF01380 SIS domain AL549_RS04020 PF01418 Helix-turn-helix domain, rpiR family AL549_RS04025 PF01344 Kelch motif AL549_RS04035 PF03264 NapC/NirT cytochrome c family, N-terminal region AL549_RS04040 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL549_RS04045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS04045 PF00384 Molybdopterin oxidoreductase AL549_RS04045 PF01568 Molydopterin dinucleotide binding domain AL549_RS04055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS04055 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL549_RS04055 PF07730 Histidine kinase AL549_RS04055 PF00672 HAMP domain AL549_RS04060 PF00072 Response regulator receiver domain AL549_RS04060 PF00196 Bacterial regulatory proteins, luxR family AL549_RS04080 PF03853 YjeF-related protein N-terminus AL549_RS04080 PF01256 Carbohydrate kinase AL549_RS04090 PF00478 IMP dehydrogenase / GMP reductase domain AL549_RS04130 PF00665 Integrase core domain AL549_RS04130 PF13333 Integrase core domain AL549_RS04130 PF13276 HTH-like domain AL549_RS04140 PF01272 Transcription elongation factor, GreA/GreB, C-term AL549_RS04140 PF14760 Rnk N-terminus AL549_RS04145 PF00583 Acetyltransferase (GNAT) family AL549_RS04155 PF03372 Endonuclease/Exonuclease/phosphatase family AL549_RS04170 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS04180 PF00270 DEAD/DEAH box helicase AL549_RS04180 PF00271 Helicase conserved C-terminal domain AL549_RS04190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_RS04195 PF01047 MarR family AL549_RS04210 PF12706 Beta-lactamase superfamily domain AL549_RS04220 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL549_RS04230 PF00005 ABC transporter AL549_RS04240 PF01418 Helix-turn-helix domain, rpiR family AL549_RS04240 PF02685 Glucokinase AL549_RS04240 PF01380 SIS domain AL549_RS04250 PF07969 Amidohydrolase family AL549_RS04260 PF00474 Sodium:solute symporter family AL549_RS04265 PF00728 Glycosyl hydrolase family 20, catalytic domain AL549_RS04265 PF02838 Glycosyl hydrolase family 20, domain 2 AL549_RS04275 PF01042 Endoribonuclease L-PSP AL549_RS04280 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS04280 PF00563 EAL domain AL549_RS04280 PF00360 Phytochrome region AL549_RS04280 PF01590 GAF domain AL549_RS04285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS04285 PF03466 LysR substrate binding domain AL549_RS04290 PF07690 Major Facilitator Superfamily AL549_RS04300 PF00462 Glutaredoxin AL549_RS04305 PF00892 EamA-like transporter family AL549_RS04310 PF00563 EAL domain AL549_RS04310 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS04310 PF03707 Bacterial signalling protein N terminal repeat AL549_RS04320 PF00578 AhpC/TSA family AL549_RS04330 PF02566 OsmC-like protein AL549_RS04335 PF01047 MarR family AL549_RS04340 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL549_RS04360 PF01810 LysE type translocator AL549_RS04370 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL549_RS04370 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL549_RS04370 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL549_RS04370 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL549_RS04375 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL549_RS04375 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL549_RS04380 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL549_RS04385 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AL549_RS04390 PF00510 Cytochrome c oxidase subunit III AL549_RS04410 PF02628 Cytochrome oxidase assembly protein AL549_RS04415 PF01040 UbiA prenyltransferase family AL549_RS04420 PF13488 Glycine zipper AL549_RS04420 PF00691 OmpA family AL549_RS04425 PF00793 DAHP synthetase I family AL549_RS04430 PF08447 PAS fold AL549_RS04430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS04435 PF00563 EAL domain AL549_RS04435 PF03707 Bacterial signalling protein N terminal repeat AL549_RS04435 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS04445 PF02780 Transketolase, C-terminal domain AL549_RS04445 PF02779 Transketolase, pyrimidine binding domain AL549_RS04445 PF00456 Transketolase, thiamine diphosphate binding domain AL549_RS04450 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL549_RS04460 PF00704 Glycosyl hydrolases family 18 AL549_RS04460 PF08329 Chitinase A, N-terminal domain AL549_RS04465 PF00563 EAL domain AL549_RS04465 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS04465 PF03707 Bacterial signalling protein N terminal repeat AL549_RS04470 PF00581 Rhodanese-like domain AL549_RS04475 PF00899 ThiF family AL549_RS04480 PF03453 MoeA N-terminal region (domain I and II) AL549_RS04480 PF03454 MoeA C-terminal region (domain IV) AL549_RS04480 PF00994 Probable molybdopterin binding domain AL549_RS04485 PF01227 GTP cyclohydrolase I AL549_RS04490 PF01566 Natural resistance-associated macrophage protein AL549_RS04500 PF00654 Voltage gated chloride channel AL549_RS04520 PF00248 Aldo/keto reductase family AL549_RS04530 PF07687 Peptidase dimerisation domain AL549_RS04530 PF01546 Peptidase family M20/M25/M40 AL549_RS04535 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL549_RS04540 PF13533 Biotin-lipoyl like AL549_RS04545 PF00873 AcrB/AcrD/AcrF family AL549_RS04550 PF12729 Four helix bundle sensory module for signal transduction AL549_RS04550 PF00672 HAMP domain AL549_RS04550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS04555 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS04560 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL549_RS04560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_RS04590 PF00313 'Cold-shock' DNA-binding domain AL549_RS04595 PF03889 Alternative ribosome-rescue factor A AL549_RS04605 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS04615 PF01238 Phosphomannose isomerase type I AL549_RS04620 PF07690 Major Facilitator Superfamily AL549_RS04625 PF07730 Histidine kinase AL549_RS04625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS04625 PF05231 MASE1 AL549_RS04630 PF00196 Bacterial regulatory proteins, luxR family AL549_RS04630 PF00072 Response regulator receiver domain AL549_RS04635 PF07690 Major Facilitator Superfamily AL549_RS04650 PF00107 Zinc-binding dehydrogenase AL549_RS04650 PF16884 N-terminal domain of oxidoreductase AL549_RS04655 PF16925 Tetracyclin repressor-like, C-terminal domain AL549_RS04655 PF00440 Bacterial regulatory proteins, tetR family AL549_RS04660 PF01699 Sodium/calcium exchanger protein AL549_RS04670 PF00313 'Cold-shock' DNA-binding domain AL549_RS04675 PF13192 Thioredoxin domain AL549_RS04675 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS04680 PF00578 AhpC/TSA family AL549_RS04680 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL549_RS04685 PF00682 HMGL-like AL549_RS04690 PF00378 Enoyl-CoA hydratase/isomerase AL549_RS04695 PF01039 Carboxyl transferase domain AL549_RS04700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL549_RS04700 PF02770 Acyl-CoA dehydrogenase, middle domain AL549_RS04700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL549_RS04705 PF00376 MerR family regulatory protein AL549_RS04705 PF09278 MerR, DNA binding AL549_RS04710 PF00108 Thiolase, N-terminal domain AL549_RS04710 PF02803 Thiolase, C-terminal domain AL549_RS04715 PF00171 Aldehyde dehydrogenase family AL549_RS04720 PF02770 Acyl-CoA dehydrogenase, middle domain AL549_RS04720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL549_RS04720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL549_RS04725 PF00378 Enoyl-CoA hydratase/isomerase AL549_RS04730 PF00378 Enoyl-CoA hydratase/isomerase AL549_RS04735 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL549_RS04735 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL549_RS04760 PF00664 ABC transporter transmembrane region AL549_RS04760 PF03412 Peptidase C39 family AL549_RS04760 PF00005 ABC transporter AL549_RS04770 PF00664 ABC transporter transmembrane region AL549_RS04770 PF00005 ABC transporter AL549_RS04770 PF03412 Peptidase C39 family AL549_RS04780 PF02794 RTX toxin acyltransferase family AL549_RS04785 PF07634 RtxA repeat AL549_RS04785 PF16671 Actin cross-linking domain AL549_RS04785 PF12146 Serine aminopeptidase, S33 AL549_RS04785 PF11647 Membrane Localization Domain AL549_RS04785 PF11713 Peptidase C80 family AL549_RS04790 PF01168 Alanine racemase, N-terminal domain AL549_RS04790 PF00842 Alanine racemase, C-terminal domain AL549_RS04795 PF00672 HAMP domain AL549_RS04795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS04805 PF01012 Electron transfer flavoprotein domain AL549_RS04810 PF00766 Electron transfer flavoprotein FAD-binding domain AL549_RS04810 PF01012 Electron transfer flavoprotein domain AL549_RS04815 PF02817 e3 binding domain AL549_RS04815 PF00364 Biotin-requiring enzyme AL549_RS04815 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL549_RS04820 PF02780 Transketolase, C-terminal domain AL549_RS04820 PF02779 Transketolase, pyrimidine binding domain AL549_RS04825 PF00676 Dehydrogenase E1 component AL549_RS04830 PF00962 Adenosine/AMP deaminase AL549_RS04840 PF11849 Domain of unknown function (DUF3369) AL549_RS04845 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS04845 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_RS04845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS04860 PF00892 EamA-like transporter family AL549_RS04870 PF03466 LysR substrate binding domain AL549_RS04870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS04880 PF00501 AMP-binding enzyme AL549_RS04880 PF13193 AMP-binding enzyme C-terminal domain AL549_RS04885 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL549_RS04890 PF01329 Pterin 4 alpha carbinolamine dehydratase AL549_RS04895 PF03707 Bacterial signalling protein N terminal repeat AL549_RS04895 PF00563 EAL domain AL549_RS04895 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS04910 PF12843 Putative quorum-sensing-regulated virulence factor AL549_RS04930 PF03793 PASTA domain AL549_RS04930 PF00069 Protein kinase domain AL549_RS04945 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AL549_RS04950 PF00691 OmpA family AL549_RS04950 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL549_RS04955 PF06761 Intracellular multiplication and human macrophage-killing AL549_RS04955 PF06744 Type VI secretion protein IcmF C-terminal AL549_RS04955 PF14331 ImcF-related N-terminal domain AL549_RS04975 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AL549_RS04980 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AL549_RS04985 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AL549_RS04990 PF07024 ImpE protein AL549_RS05000 PF05947 Type VI secretion system, TssF AL549_RS05010 PF07724 AAA domain (Cdc48 subfamily) AL549_RS05010 PF00004 ATPase family associated with various cellular activities (AAA) AL549_RS05010 PF10431 C-terminal, D2-small domain, of ClpB protein AL549_RS05010 PF17871 AAA lid domain AL549_RS05020 PF06715 Gp5 C-terminal repeat (3 copies) AL549_RS05020 PF04717 Type VI secretion system, phage-baseplate injector AL549_RS05035 PF05593 RHS Repeat AL549_RS05035 PF03527 RHS protein AL549_RS05050 PF04634 Protein of unknown function, DUF600 AL549_RS05055 PF03527 RHS protein AL549_RS05095 PF01435 Peptidase family M48 AL549_RS05100 PF04011 LemA family AL549_RS05105 PF03606 C4-dicarboxylate anaerobic carrier AL549_RS05110 PF07963 Prokaryotic N-terminal methylation motif AL549_RS05110 PF08334 Type II secretion system (T2SS), protein G AL549_RS05115 PF01523 Putative modulator of DNA gyrase AL549_RS05120 PF01523 Putative modulator of DNA gyrase AL549_RS05125 PF03009 Glycerophosphoryl diester phosphodiesterase family AL549_RS05130 PF07690 Major Facilitator Superfamily AL549_RS05135 PF07968 Leukocidin/Hemolysin toxin family AL549_RS05135 PF00652 Ricin-type beta-trefoil lectin domain AL549_RS05145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS05145 PF00672 HAMP domain AL549_RS05150 PF00672 HAMP domain AL549_RS05150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS05155 PF00128 Alpha amylase, catalytic domain AL549_RS05160 PF00583 Acetyltransferase (GNAT) family AL549_RS05165 PF01568 Molydopterin dinucleotide binding domain AL549_RS05165 PF04324 BFD-like [2Fe-2S] binding domain AL549_RS05165 PF00384 Molybdopterin oxidoreductase AL549_RS05165 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS05170 PF10414 Sirohaem synthase dimerisation region AL549_RS05170 PF14824 Sirohaem biosynthesis protein central AL549_RS05170 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_RS05175 PF02885 Glycosyl transferase family, helical bundle domain AL549_RS05175 PF00591 Glycosyl transferase family, a/b domain AL549_RS05180 PF01738 Dienelactone hydrolase family AL549_RS05185 PF08376 Nitrate and nitrite sensing AL549_RS05185 PF03861 ANTAR domain AL549_RS05190 PF00005 ABC transporter AL549_RS05195 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS05200 PF00005 ABC transporter AL549_RS05205 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS05205 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL549_RS05205 PF13806 Rieske-like [2Fe-2S] domain AL549_RS05205 PF04324 BFD-like [2Fe-2S] binding domain AL549_RS05205 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL549_RS05205 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL549_RS05220 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05230 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL549_RS05230 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL549_RS05240 PF00271 Helicase conserved C-terminal domain AL549_RS05240 PF00270 DEAD/DEAH box helicase AL549_RS05245 PF00491 Arginase family AL549_RS05255 PF00360 Phytochrome region AL549_RS05255 PF01590 GAF domain AL549_RS05255 PF00563 EAL domain AL549_RS05255 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05260 PF01339 CheB methylesterase AL549_RS05265 PF01739 CheR methyltransferase, SAM binding domain AL549_RS05265 PF03705 CheR methyltransferase, all-alpha domain AL549_RS05270 PF00672 HAMP domain AL549_RS05270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS05270 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_RS05270 PF00072 Response regulator receiver domain AL549_RS05270 PF01627 Hpt domain AL549_RS05270 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS05275 PF01575 MaoC like domain AL549_RS05295 PF17200 Single Cache domain 2 AL549_RS05295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS05295 PF00672 HAMP domain AL549_RS05300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL549_RS05300 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS05300 PF04324 BFD-like [2Fe-2S] binding domain AL549_RS05300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL549_RS05300 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL549_RS05305 PF13806 Rieske-like [2Fe-2S] domain AL549_RS05315 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_RS05315 PF14824 Sirohaem biosynthesis protein central AL549_RS05315 PF10414 Sirohaem synthase dimerisation region AL549_RS05335 PF01618 MotA/TolQ/ExbB proton channel family AL549_RS05340 PF01618 MotA/TolQ/ExbB proton channel family AL549_RS05345 PF02472 Biopolymer transport protein ExbD/TolR AL549_RS05360 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL549_RS05365 PF17200 Single Cache domain 2 AL549_RS05365 PF00672 HAMP domain AL549_RS05365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS05375 PF11756 Nitrous oxide-stimulated promoter AL549_RS05380 PF01554 MatE AL549_RS05385 PF12833 Helix-turn-helix domain AL549_RS05390 PF07690 Major Facilitator Superfamily AL549_RS05395 PF00085 Thioredoxin AL549_RS05400 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL549_RS05400 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL549_RS05415 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS05415 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL549_RS05430 PF04143 Sulphur transport AL549_RS05445 PF00873 AcrB/AcrD/AcrF family AL549_RS05455 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL549_RS05455 PF03477 ATP cone domain AL549_RS05465 PF00672 HAMP domain AL549_RS05465 PF12729 Four helix bundle sensory module for signal transduction AL549_RS05465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS05470 PF00155 Aminotransferase class I and II AL549_RS05475 PF08443 RimK-like ATP-grasp domain AL549_RS05475 PF18030 RimK PreATP-grasp domain AL549_RS05480 PF13006 Insertion element 4 transposase N-terminal AL549_RS05480 PF01609 Transposase DDE domain AL549_RS05495 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL549_RS05495 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL549_RS05505 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS05510 PF00005 ABC transporter AL549_RS05510 PF03459 TOBE domain AL549_RS05515 PF00892 EamA-like transporter family AL549_RS05520 PF01047 MarR family AL549_RS05530 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05530 PF08448 PAS fold AL549_RS05540 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05555 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL549_RS05555 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL549_RS05555 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL549_RS05560 PF02233 NAD(P) transhydrogenase beta subunit AL549_RS05570 PF00072 Response regulator receiver domain AL549_RS05570 PF00486 Transcriptional regulatory protein, C terminal AL549_RS05590 PF01253 Translation initiation factor SUI1 AL549_RS05600 PF07478 D-ala D-ala ligase C-terminus AL549_RS05600 PF01820 D-ala D-ala ligase N-terminus AL549_RS05605 PF05036 Sporulation related domain AL549_RS05610 PF13607 Succinyl-CoA ligase like flavodoxin domain AL549_RS05610 PF13380 CoA binding domain AL549_RS05610 PF00583 Acetyltransferase (GNAT) family AL549_RS05615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS05615 PF03466 LysR substrate binding domain AL549_RS05620 PF00593 TonB dependent receptor AL549_RS05620 PF07715 TonB-dependent Receptor Plug Domain AL549_RS05625 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05625 PF00563 EAL domain AL549_RS05625 PF08447 PAS fold AL549_RS05625 PF08448 PAS fold AL549_RS05625 PF05231 MASE1 AL549_RS05625 PF13426 PAS domain AL549_RS05635 PF03746 LamB/YcsF family AL549_RS05640 PF02682 Carboxyltransferase domain, subdomain C and D AL549_RS05645 PF02626 Carboxyltransferase domain, subdomain A and B AL549_RS05650 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL549_RS05650 PF01266 FAD dependent oxidoreductase AL549_RS05660 PF00005 ABC transporter AL549_RS05665 PF13472 GDSL-like Lipase/Acylhydrolase family AL549_RS05670 PF07055 Enoyl reductase FAD binding domain AL549_RS05670 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL549_RS05670 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL549_RS05675 PF00563 EAL domain AL549_RS05675 PF00498 FHA domain AL549_RS05675 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05690 PF01556 DnaJ C terminal domain AL549_RS05690 PF00226 DnaJ domain AL549_RS05690 PF00684 DnaJ central domain AL549_RS05710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS05710 PF03466 LysR substrate binding domain AL549_RS05715 PF16657 Maltogenic Amylase, C-terminal domain AL549_RS05715 PF00128 Alpha amylase, catalytic domain AL549_RS05725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_RS05725 PF12793 Sugar transport-related sRNA regulator N-term AL549_RS05735 PF03061 Thioesterase superfamily AL549_RS05750 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL549_RS05755 PF12262 Bacterial virulence factor lipase N-terminal AL549_RS05770 PF00491 Arginase family AL549_RS05775 PF00892 EamA-like transporter family AL549_RS05785 PF03741 Integral membrane protein TerC family AL549_RS05790 PF00149 Calcineurin-like phosphoesterase AL549_RS05790 PF02872 5'-nucleotidase, C-terminal domain AL549_RS05795 PF11398 Protein of unknown function (DUF2813) AL549_RS05800 PF06496 Protein of unknown function (DUF1097) AL549_RS05805 PF03466 LysR substrate binding domain AL549_RS05805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS05810 PF01226 Formate/nitrite transporter AL549_RS05815 PF04264 YceI-like domain AL549_RS05820 PF01292 Prokaryotic cytochrome b561 AL549_RS05835 PF00271 Helicase conserved C-terminal domain AL549_RS05835 PF00270 DEAD/DEAH box helicase AL549_RS05840 PF04336 Acyl carrier protein phosphodiesterase AL549_RS05845 PF00672 HAMP domain AL549_RS05845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS05850 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS05855 PF11849 Domain of unknown function (DUF3369) AL549_RS05870 PF00294 pfkB family carbohydrate kinase AL549_RS05875 PF01268 Formate--tetrahydrofolate ligase AL549_RS05880 PF00483 Nucleotidyl transferase AL549_RS05885 PF06483 Chitinase C AL549_RS05885 PF00704 Glycosyl hydrolases family 18 AL549_RS05890 PF12833 Helix-turn-helix domain AL549_RS05890 PF06719 AraC-type transcriptional regulator N-terminus AL549_RS05895 PF00465 Iron-containing alcohol dehydrogenase AL549_RS05900 PF00072 Response regulator receiver domain AL549_RS05900 PF14532 Sigma-54 interaction domain AL549_RS05900 PF02954 Bacterial regulatory protein, Fis family AL549_RS05905 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS05905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS05905 PF02743 Cache domain AL549_RS05915 PF07690 Major Facilitator Superfamily AL549_RS05920 PF00224 Pyruvate kinase, barrel domain AL549_RS05920 PF02887 Pyruvate kinase, alpha/beta domain AL549_RS05945 PF00356 Bacterial regulatory proteins, lacI family AL549_RS05945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL549_RS05950 PF00381 PTS HPr component phosphorylation site AL549_RS05950 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_RS05955 PF00294 pfkB family carbohydrate kinase AL549_RS05960 PF02378 Phosphotransferase system, EIIC AL549_RS05960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_RS05970 PF00873 AcrB/AcrD/AcrF family AL549_RS05995 PF01571 Aminomethyltransferase folate-binding domain AL549_RS05995 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL549_RS06005 PF00464 Serine hydroxymethyltransferase AL549_RS06010 PF01597 Glycine cleavage H-protein AL549_RS06015 PF02347 Glycine cleavage system P-protein AL549_RS06035 PF00664 ABC transporter transmembrane region AL549_RS06035 PF00005 ABC transporter AL549_RS06045 PF00795 Carbon-nitrogen hydrolase AL549_RS06070 PF13533 Biotin-lipoyl like AL549_RS06075 PF07690 Major Facilitator Superfamily AL549_RS06095 PF18081 Fanconi anemia-associated nuclease SAP domain AL549_RS06095 PF08774 VRR-NUC domain AL549_RS06105 PF04055 Radical SAM superfamily AL549_RS06105 PF13186 Iron-sulfur cluster-binding domain AL549_RS06110 PF03781 Sulfatase-modifying factor enzyme 1 AL549_RS06115 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AL549_RS06120 PF03466 LysR substrate binding domain AL549_RS06120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS06135 PF00092 von Willebrand factor type A domain AL549_RS06150 PF07726 ATPase family associated with various cellular activities (AAA) AL549_RS06150 PF17863 AAA lid domain AL549_RS06155 PF13186 Iron-sulfur cluster-binding domain AL549_RS06155 PF04055 Radical SAM superfamily AL549_RS06160 PF00884 Sulfatase AL549_RS06165 PF03466 LysR substrate binding domain AL549_RS06165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS06170 PF00884 Sulfatase AL549_RS06175 PF00871 Acetokinase family AL549_RS06180 PF00271 Helicase conserved C-terminal domain AL549_RS06180 PF00270 DEAD/DEAH box helicase AL549_RS06180 PF03880 DbpA RNA binding domain AL549_RS06185 PF08206 Ribonuclease B OB domain AL549_RS06185 PF00773 RNB domain AL549_RS06185 PF00575 S1 RNA binding domain AL549_RS06190 PF12833 Helix-turn-helix domain AL549_RS06200 PF12849 PBP superfamily domain AL549_RS06210 PF03707 Bacterial signalling protein N terminal repeat AL549_RS06210 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS06210 PF00563 EAL domain AL549_RS06225 PF00498 FHA domain AL549_RS06225 PF00563 EAL domain AL549_RS06225 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS06230 PF09456 RcsC Alpha-Beta-Loop (ABL) AL549_RS06230 PF00072 Response regulator receiver domain AL549_RS06230 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS06230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS06235 PF03880 DbpA RNA binding domain AL549_RS06235 PF00270 DEAD/DEAH box helicase AL549_RS06235 PF00271 Helicase conserved C-terminal domain AL549_RS06240 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB AL549_RS06245 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) AL549_RS06260 PF03264 NapC/NirT cytochrome c family, N-terminal region AL549_RS06265 PF03781 Sulfatase-modifying factor enzyme 1 AL549_RS06285 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS06285 PF00072 Response regulator receiver domain AL549_RS06285 PF01627 Hpt domain AL549_RS06285 PF00672 HAMP domain AL549_RS06285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS06285 PF17149 Periplasmic sensor domain found in signal transduction proteins AL549_RS06290 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL549_RS06295 PF02142 MGS-like domain AL549_RS06300 PF00580 UvrD/REP helicase N-terminal domain AL549_RS06300 PF12462 DNA helicase IV / RNA helicase N terminal AL549_RS06300 PF13361 UvrD-like helicase C-terminal domain AL549_RS06305 PF12805 FUSC-like inner membrane protein yccS AL549_RS06335 PF13411 MerR HTH family regulatory protein AL549_RS06340 PF00005 ABC transporter AL549_RS06345 PF01032 FecCD transport family AL549_RS06350 PF01032 FecCD transport family AL549_RS06365 PF12464 Maltose acetyltransferase AL549_RS06365 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS06370 PF00072 Response regulator receiver domain AL549_RS06370 PF12431 Transcriptional regulator AL549_RS06375 PF00989 PAS fold AL549_RS06375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS06375 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL549_RS06375 PF17203 Single cache domain 3 AL549_RS06380 PF00939 Sodium:sulfate symporter transmembrane region AL549_RS06450 PF00437 Type II/IV secretion system protein AL549_RS06465 PF13629 Pilus formation protein N terminal region AL549_RS06465 PF04972 BON domain AL549_RS06465 PF00263 Bacterial type II and III secretion system protein AL549_RS06485 PF03466 LysR substrate binding domain AL549_RS06485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS06495 PF13476 AAA domain AL549_RS06500 PF12320 Type 5 capsule protein repressor C-terminal domain AL549_RS06500 PF00149 Calcineurin-like phosphoesterase AL549_RS06505 PF00672 HAMP domain AL549_RS06505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS06505 PF12729 Four helix bundle sensory module for signal transduction AL549_RS06510 PF01926 50S ribosome-binding GTPase AL549_RS06515 PF00583 Acetyltransferase (GNAT) family AL549_RS06525 PF00072 Response regulator receiver domain AL549_RS06525 PF01584 CheW-like domain AL549_RS06530 PF00356 Bacterial regulatory proteins, lacI family AL549_RS06535 PF00294 pfkB family carbohydrate kinase AL549_RS06540 PF13407 Periplasmic binding protein domain AL549_RS06545 PF02653 Branched-chain amino acid transport system / permease component AL549_RS06550 PF00005 ABC transporter AL549_RS06555 PF05025 RbsD / FucU transport protein family AL549_RS06570 PF04237 YjbR AL549_RS06575 PF05762 VWA domain containing CoxE-like protein AL549_RS06580 PF12592 Protein of unknown function (DUF3763) AL549_RS06580 PF07728 AAA domain (dynein-related subfamily) AL549_RS06580 PF17868 AAA lid domain AL549_RS06590 PF01212 Beta-eliminating lyase AL549_RS06595 PF00034 Cytochrome c AL549_RS06600 PF00171 Aldehyde dehydrogenase family AL549_RS06605 PF03606 C4-dicarboxylate anaerobic carrier AL549_RS06615 PF01569 PAP2 superfamily AL549_RS06620 PF04266 ASCH domain AL549_RS06630 PF00892 EamA-like transporter family AL549_RS06635 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL549_RS06635 PF18416 N-acetylglucosamine binding protein domain 2 AL549_RS06645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS06645 PF02743 Cache domain AL549_RS06645 PF00672 HAMP domain AL549_RS06655 PF00149 Calcineurin-like phosphoesterase AL549_RS06660 PF03222 Tryptophan/tyrosine permease family AL549_RS06680 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL549_RS06680 PF01447 Thermolysin metallopeptidase, catalytic domain AL549_RS06680 PF03413 Peptidase propeptide and YPEB domain AL549_RS06680 PF07504 Fungalysin/Thermolysin Propeptide Motif AL549_RS06685 PF13194 Domain of unknown function (DUF4010) AL549_RS06690 PF00873 AcrB/AcrD/AcrF family AL549_RS06695 PF13533 Biotin-lipoyl like AL549_RS06720 PF00581 Rhodanese-like domain AL549_RS06725 PF00012 Hsp70 protein AL549_RS06730 PF00465 Iron-containing alcohol dehydrogenase AL549_RS06740 PF07995 Glucose / Sorbosone dehydrogenase AL549_RS06745 PF02016 LD-carboxypeptidase N-terminal domain AL549_RS06745 PF17676 LD-carboxypeptidase C-terminal domain AL549_RS06760 PF02754 Cysteine-rich domain AL549_RS06760 PF13183 4Fe-4S dicluster domain AL549_RS06765 PF00890 FAD binding domain AL549_RS06770 PF01266 FAD dependent oxidoreductase AL549_RS06770 PF04324 BFD-like [2Fe-2S] binding domain AL549_RS06790 PF03618 Kinase/pyrophosphorylase AL549_RS06795 PF00391 PEP-utilising enzyme, mobile domain AL549_RS06795 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL549_RS06795 PF02896 PEP-utilising enzyme, TIM barrel domain AL549_RS06800 PF04224 Protein of unknown function, DUF417 AL549_RS06805 PF00571 CBS domain AL549_RS06805 PF00005 ABC transporter AL549_RS06810 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS06815 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL549_RS06825 PF00171 Aldehyde dehydrogenase family AL549_RS06830 PF00440 Bacterial regulatory proteins, tetR family AL549_RS06830 PF13977 BetI-type transcriptional repressor, C-terminal AL549_RS06850 PF00768 D-alanyl-D-alanine carboxypeptidase AL549_RS06850 PF07943 Penicillin-binding protein 5, C-terminal domain AL549_RS06870 PF03313 Serine dehydratase alpha chain AL549_RS06870 PF03315 Serine dehydratase beta chain AL549_RS06875 PF00854 POT family AL549_RS06885 PF03466 LysR substrate binding domain AL549_RS06885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS06890 PF01266 FAD dependent oxidoreductase AL549_RS06900 PF00392 Bacterial regulatory proteins, gntR family AL549_RS06900 PF07702 UTRA domain AL549_RS06905 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS06910 PF00005 ABC transporter AL549_RS06925 PF00266 Aminotransferase class-V AL549_RS06930 PF00202 Aminotransferase class-III AL549_RS06935 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS06940 PF12833 Helix-turn-helix domain AL549_RS06940 PF01497 Periplasmic binding protein AL549_RS06945 PF00155 Aminotransferase class I and II AL549_RS06955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS06955 PF00672 HAMP domain AL549_RS06970 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS06975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS06975 PF03466 LysR substrate binding domain AL549_RS06990 PF14602 Hexapeptide repeat of succinyl-transferase AL549_RS06990 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS06990 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AL549_RS06995 PF02566 OsmC-like protein AL549_RS07000 PF01641 SelR domain AL549_RS07000 PF01625 Peptide methionine sulfoxide reductase AL549_RS07005 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS07020 PF12729 Four helix bundle sensory module for signal transduction AL549_RS07020 PF00672 HAMP domain AL549_RS07020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS07025 PF03707 Bacterial signalling protein N terminal repeat AL549_RS07025 PF00563 EAL domain AL549_RS07025 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS07040 PF07670 Nucleoside recognition AL549_RS07040 PF07662 Na+ dependent nucleoside transporter C-terminus AL549_RS07040 PF01773 Na+ dependent nucleoside transporter N-terminus AL549_RS07065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL549_RS07065 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL549_RS07080 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS07085 PF01551 Peptidase family M23 AL549_RS07085 PF08525 Opacity-associated protein A N-terminal motif AL549_RS07085 PF01476 LysM domain AL549_RS07100 PF07670 Nucleoside recognition AL549_RS07115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS07115 PF02743 Cache domain AL549_RS07115 PF00672 HAMP domain AL549_RS07120 PF02743 Cache domain AL549_RS07120 PF00672 HAMP domain AL549_RS07120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS07125 PF00128 Alpha amylase, catalytic domain AL549_RS07130 PF00582 Universal stress protein family AL549_RS07140 PF00072 Response regulator receiver domain AL549_RS07140 PF01584 CheW-like domain AL549_RS07150 PF01243 Pyridoxamine 5'-phosphate oxidase AL549_RS07155 PF06228 Haem utilisation ChuX/HutX AL549_RS07160 PF04055 Radical SAM superfamily AL549_RS07165 PF03544 Gram-negative bacterial TonB protein C-terminal AL549_RS07170 PF01618 MotA/TolQ/ExbB proton channel family AL549_RS07175 PF02472 Biopolymer transport protein ExbD/TolR AL549_RS07185 PF01032 FecCD transport family AL549_RS07190 PF00005 ABC transporter AL549_RS07310 PF13614 AAA domain AL549_RS07310 PF13807 G-rich domain on putative tyrosine kinase AL549_RS07310 PF02706 Chain length determinant protein AL549_RS07430 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS07580 PF00194 Eukaryotic-type carbonic anhydrase AL549_RS07690 PF00072 Response regulator receiver domain AL549_RS07690 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS07690 PF09456 RcsC Alpha-Beta-Loop (ABL) AL549_RS07690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS08525 PF02929 Beta galactosidase small chain AL549_RS08525 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL549_RS08525 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL549_RS08525 PF00703 Glycosyl hydrolases family 2 AL549_RS08525 PF16353 Domain of unknown function(DUF4981) AL549_RS08550 PF00356 Bacterial regulatory proteins, lacI family AL549_RS08755 PF08402 TOBE domain AL549_RS08755 PF00005 ABC transporter AL549_RS08760 PF00005 ABC transporter AL549_RS08760 PF08402 TOBE domain AL549_RS08775 PF00232 Glycosyl hydrolase family 1 AL549_RS08800 PF00232 Glycosyl hydrolase family 1 AL549_RS08910 PF02798 Glutathione S-transferase, N-terminal domain AL549_RS09100 PF17967 Pullulanase N2 domain AL549_RS09100 PF18494 Pullulanase Ins domain AL549_RS09100 PF03714 Bacterial pullanase-associated domain AL549_RS09100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL549_RS09100 PF11852 Domain of unknown function (DUF3372) AL549_RS09455 PF00672 HAMP domain AL549_RS09455 PF02203 Tar ligand binding domain homologue AL549_RS09455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS09545 PF04151 Bacterial pre-peptidase C-terminal domain AL549_RS09545 PF08453 Peptidase family M9 N-terminal AL549_RS09545 PF01752 Collagenase AL549_RS09550 PF01752 Collagenase AL549_RS09550 PF04151 Bacterial pre-peptidase C-terminal domain AL549_RS09550 PF08453 Peptidase family M9 N-terminal AL549_RS10230 PF01032 FecCD transport family AL549_RS10645 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS10645 PF09308 LuxQ, periplasmic AL549_RS10645 PF00072 Response regulator receiver domain AL549_RS10645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS10795 PF13229 Right handed beta helix region AL549_RS10810 PF14583 Oligogalacturonate lyase AL549_RS11085 PF00873 AcrB/AcrD/AcrF family AL549_RS11195 PF00668 Condensation domain AL549_RS11195 PF00501 AMP-binding enzyme AL549_RS11195 PF00550 Phosphopantetheine attachment site AL549_RS11315 PF02378 Phosphotransferase system, EIIC AL549_RS11375 PF13183 4Fe-4S dicluster domain AL549_RS11375 PF11870 Domain of unknown function (DUF3390) AL549_RS11375 PF02589 LUD domain AL549_RS11575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS11575 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS11575 PF09308 LuxQ, periplasmic AL549_RS11575 PF00072 Response regulator receiver domain AL549_RS11755 PF03853 YjeF-related protein N-terminus AL549_RS11755 PF01256 Carbohydrate kinase AL549_RS11895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL549_RS11895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL549_RS11895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL549_RS11895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL549_RS11955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS11955 PF00672 HAMP domain AL549_RS12000 PF00196 Bacterial regulatory proteins, luxR family AL549_RS12000 PF00563 EAL domain AL549_RS12310 PF11647 Membrane Localization Domain AL549_RS12310 PF12146 Serine aminopeptidase, S33 AL549_RS12310 PF16671 Actin cross-linking domain AL549_RS12310 PF07634 RtxA repeat AL549_RS12310 PF11713 Peptidase C80 family AL549_RS12330 PF11647 Membrane Localization Domain AL549_RS12330 PF07634 RtxA repeat AL549_RS12330 PF11713 Peptidase C80 family AL549_RS12330 PF12146 Serine aminopeptidase, S33 AL549_RS12330 PF16671 Actin cross-linking domain AL549_RS12545 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AL549_RS12690 PF01435 Peptidase family M48 AL549_RS12740 PF07690 Major Facilitator Superfamily AL549_RS12815 PF10414 Sirohaem synthase dimerisation region AL549_RS12815 PF14824 Sirohaem biosynthesis protein central AL549_RS12815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_RS12995 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS12995 PF01627 Hpt domain AL549_RS12995 PF00072 Response regulator receiver domain AL549_RS12995 PF17149 Periplasmic sensor domain found in signal transduction proteins AL549_RS12995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS12995 PF00672 HAMP domain AL549_RS13185 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS13185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL549_RS13755 PF00270 DEAD/DEAH box helicase AL549_RS13755 PF00271 Helicase conserved C-terminal domain AL549_RS13805 PF11849 Domain of unknown function (DUF3369) AL549_RS13855 PF06483 Chitinase C AL549_RS13855 PF00704 Glycosyl hydrolases family 18 AL549_RS13865 PF00704 Glycosyl hydrolases family 18 AL549_RS13865 PF06483 Chitinase C AL549_RS13945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_RS13945 PF02378 Phosphotransferase system, EIIC AL549_RS13950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_RS13950 PF02378 Phosphotransferase system, EIIC AL549_RS14575 PF02653 Branched-chain amino acid transport system / permease component AL549_RS14955 PF12833 Helix-turn-helix domain AL549_RS14955 PF01497 Periplasmic binding protein AL549_RS15205 PF08335 GlnD PII-uridylyltransferase AL549_RS15205 PF03710 Glutamate-ammonia ligase adenylyltransferase AL549_RS15415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL549_RS15415 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL549_RS15415 PF02142 MGS-like domain AL549_RS15435 PF01497 Periplasmic binding protein AL549_RS15455 PF01493 GXGXG motif AL549_RS15455 PF04898 Glutamate synthase central domain AL549_RS15455 PF00310 Glutamine amidotransferases class-II AL549_RS15455 PF01645 Conserved region in glutamate synthase AL549_RS15590 PF17768 RecJ OB domain AL549_RS15590 PF02272 DHHA1 domain AL549_RS15590 PF01368 DHH family AL549_RS15745 PF00793 DAHP synthetase I family AL549_RS16065 PF12404 Peptidase AL549_RS16065 PF00883 Cytosol aminopeptidase family, catalytic domain AL549_RS16090 PF04551 GcpE protein AL549_RS16145 PF00571 CBS domain AL549_RS16145 PF00478 IMP dehydrogenase / GMP reductase domain AL549_RS16265 PF02463 RecF/RecN/SMC N terminal domain AL549_RS16405 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL549_RS16405 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL549_RS16405 PF02769 AIR synthase related protein, C-terminal domain AL549_RS16750 PF13369 Transglutaminase-like superfamily AL549_RS16850 PF01609 Transposase DDE domain AL549_RS16850 PF13006 Insertion element 4 transposase N-terminal AL549_RS17065 PF00480 ROK family AL549_RS17065 PF01047 MarR family AL549_RS17070 PF00480 ROK family AL549_RS17070 PF01047 MarR family AL549_RS17110 PF00258 Flavodoxin AL549_RS17325 PF00221 Aromatic amino acid lyase AL549_RS17380 PF02743 Cache domain AL549_RS17380 PF00672 HAMP domain AL549_RS17380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS17405 PF01547 Bacterial extracellular solute-binding protein AL549_RS17605 PF03601 Conserved hypothetical protein 698 AL549_RS18055 PF02508 Rnf-Nqr subunit, membrane protein AL549_RS18340 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL549_RS18340 PF01578 Cytochrome C assembly protein AL549_RS18385 PF00575 S1 RNA binding domain AL549_RS18385 PF10150 Ribonuclease E/G family AL549_RS18385 PF12111 Polyribonucleotide phosphorylase C terminal AL549_RS18395 PF10150 Ribonuclease E/G family AL549_RS18395 PF12111 Polyribonucleotide phosphorylase C terminal AL549_RS18395 PF00575 S1 RNA binding domain AL549_RS18465 PF00209 Sodium:neurotransmitter symporter family AL549_RS18695 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL549_RS18695 PF01580 FtsK/SpoIIIE family AL549_RS18695 PF09397 Ftsk gamma domain AL549_RS18695 PF17854 FtsK alpha domain AL549_RS18740 PF00202 Aminotransferase class-III AL549_RS19125 PF00209 Sodium:neurotransmitter symporter family AL549_RS19170 PF00158 Sigma-54 interaction domain AL549_RS19170 PF01590 GAF domain AL549_RS19290 PF06965 Na+/H+ antiporter 1 AL549_RS19315 PF07055 Enoyl reductase FAD binding domain AL549_RS19315 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL549_RS19315 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL549_RS19345 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL549_RS19385 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS19385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS19440 PF00939 Sodium:sulfate symporter transmembrane region AL549_RS19480 PF04408 Helicase associated domain (HA2) AL549_RS19480 PF11898 Domain of unknown function (DUF3418) AL549_RS19480 PF00271 Helicase conserved C-terminal domain AL549_RS19480 PF00270 DEAD/DEAH box helicase AL549_RS19480 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL549_RS19685 PF00141 Peroxidase AL549_RS20435 PF05088 Bacterial NAD-glutamate dehydrogenase AL549_RS20445 PF01180 Dihydroorotate dehydrogenase AL549_RS20465 PF10672 S-adenosylmethionine-dependent methyltransferase AL549_RS20465 PF01170 Putative RNA methylase family UPF0020 AL549_RS20465 PF02926 THUMP domain AL549_RS20625 PF13416 Bacterial extracellular solute-binding protein AL549_RS20725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS20725 PF00672 HAMP domain AL549_RS20725 PF02743 Cache domain AL549_RS20735 PF12848 ABC transporter AL549_RS20735 PF00005 ABC transporter AL549_RS21880 PF13495 Phage integrase, N-terminal SAM-like domain AL549_RS21880 PF00589 Phage integrase family AL549_RS21935 PF00221 Aromatic amino acid lyase AL549_RS21970 PF13183 4Fe-4S dicluster domain AL549_RS21970 PF01565 FAD binding domain AL549_RS21970 PF02913 FAD linked oxidases, C-terminal domain AL549_RS22025 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL549_RS22025 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL549_RS22175 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL549_RS22175 PF00271 Helicase conserved C-terminal domain AL549_RS22175 PF11898 Domain of unknown function (DUF3418) AL549_RS22175 PF00270 DEAD/DEAH box helicase AL549_RS22175 PF04408 Helicase associated domain (HA2) AL549_RS22180 PF00270 DEAD/DEAH box helicase AL549_RS22180 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL549_RS22180 PF00271 Helicase conserved C-terminal domain AL549_RS22180 PF04408 Helicase associated domain (HA2) AL549_RS22180 PF11898 Domain of unknown function (DUF3418)