AL549_RS00010	PF01553	Acyltransferase
AL549_RS00025	PF01467	Cytidylyltransferase
AL549_RS00030	PF02540	NAD synthase
AL549_RS00035	PF00111	2Fe-2S iron-sulfur cluster binding domain
AL549_RS00035	PF00175	Oxidoreductase NAD-binding domain
AL549_RS00035	PF00970	Oxidoreductase FAD-binding domain
AL549_RS00035	PF03473	MOSC domain
AL549_RS00035	PF03476	MOSC N-terminal beta barrel domain
AL549_RS00040	PF01979	Amidohydrolase family
AL549_RS00045	PF00990	GGDEF domain
AL549_RS00050	PF05661	AL549_RS00050
AL549_RS00055	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL549_RS00060	PF12833	Helix-turn-helix domain
AL549_RS00065	PF00892	EamA-like transporter family
AL549_RS00070	PF03061	Thioesterase superfamily
AL549_RS00080	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS00085	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS00085	PF14785	Maltose transport system permease protein MalF P2 domain
AL549_RS00090	PF13416	Bacterial extracellular solute-binding protein
AL549_RS00095	PF00005	ABC transporter
AL549_RS00095	PF08402	TOBE domain
AL549_RS00100	PF02397	AL549_RS00100
AL549_RS00100	PF13727	CoA-binding domain
AL549_RS00105	PF10082	AL549_RS00105
AL549_RS00110	PF02563	Polysaccharide biosynthesis/export protein
AL549_RS00110	PF10531	SLBB domain
AL549_RS00115	PF02706	Chain length determinant protein
AL549_RS00115	PF13614	AAA domain
AL549_RS00115	PF13807	AL549_RS00115
AL549_RS00120	PF00534	Glycosyl transferases group 1
AL549_RS00120	PF13439	Glycosyltransferase Family 4
AL549_RS00125	PF10364	AL549_RS00125
AL549_RS00130	PF13439	Glycosyltransferase Family 4
AL549_RS00130	PF13692	Glycosyl transferases group 1
AL549_RS00135	PF01943	AL549_RS00135
AL549_RS00140	PF04892	AL549_RS00140
AL549_RS00145	PF13437	HlyD family secretion protein
AL549_RS00145	PF13533	Biotin-lipoyl like
AL549_RS00150	PF00005	ABC transporter
AL549_RS00155	PF00353	Hemolysin-type calcium-binding repeat (2 copies)
AL549_RS00160	PF00196	Bacterial regulatory proteins, luxR family
AL549_RS00165	PF00196	Bacterial regulatory proteins, luxR family
AL549_RS00175	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS00175	PF00672	HAMP domain
AL549_RS00175	PF02743	Cache domain
AL549_RS00180	PF07726	ATPase family associated with various cellular activities (AAA)
AL549_RS00185	PF01882	AL549_RS00185
AL549_RS00190	PF14316	AL549_RS00190
AL549_RS00195	PF00092	von Willebrand factor type A domain
AL549_RS00200	PF00515	Tetratricopeptide repeat
AL549_RS00200	PF13519	von Willebrand factor type A domain
AL549_RS00205	PF13584	AL549_RS00205
AL549_RS00210	PF00990	GGDEF domain
AL549_RS00215	PF00005	ABC transporter
AL549_RS00220	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS00225	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS00230	PF12849	PBP superfamily domain
AL549_RS00235	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS00235	PF00672	HAMP domain
AL549_RS00240	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS00240	PF00672	HAMP domain
AL549_RS00240	PF02743	Cache domain
AL549_RS00245	PF07603	AL549_RS00245
AL549_RS00250	PF01483	Proprotein convertase P-domain
AL549_RS00255	PF00593	TonB dependent receptor
AL549_RS00255	PF07715	TonB-dependent Receptor Plug Domain
AL549_RS00260	PF00326	Prolyl oligopeptidase family
AL549_RS00260	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL549_RS00265	PF00270	DEAD/DEAH box helicase
AL549_RS00265	PF00271	Helicase conserved C-terminal domain
AL549_RS00270	PF11839	AL549_RS00270
AL549_RS00275	PF01476	LysM domain
AL549_RS00275	PF03734	L,D-transpeptidase catalytic domain
AL549_RS00280	PF00875	DNA photolyase
AL549_RS00280	PF03441	FAD binding domain of DNA photolyase
AL549_RS00285	PF13411	MerR HTH family regulatory protein
AL549_RS00290	PF04463	AL549_RS00290
AL549_RS00290	PF08349	AL549_RS00290
AL549_RS00295	PF01048	Phosphorylase superfamily
AL549_RS00310	PF00990	GGDEF domain
AL549_RS00315	PF11742	AL549_RS00315
AL549_RS00320	PF13533	Biotin-lipoyl like
AL549_RS00325	PF07155	ECF-type riboflavin transporter, S component
AL549_RS00330	PF00005	ABC transporter
AL549_RS00330	PF12558	AL549_RS00330
AL549_RS00335	PF02361	Cobalt transport protein
AL549_RS00340	PF07690	Major Facilitator Superfamily
AL549_RS00345	PF03572	Peptidase family S41
AL549_RS00345	PF07676	WD40-like Beta Propeller Repeat
AL549_RS00345	PF14684	Tricorn protease C1 domain
AL549_RS00345	PF14685	Tricorn protease PDZ domain
AL549_RS00350	PF13302	Acetyltransferase (GNAT) domain
AL549_RS00355	PF14542	GCN5-related N-acetyl-transferase
AL549_RS00360	PF07238	PilZ domain
AL549_RS00360	PF12945	Flagellar protein YcgR
AL549_RS00365	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS00365	PF00672	HAMP domain
AL549_RS00375	PF00924	Mechanosensitive ion channel
AL549_RS00380	PF00194	Eukaryotic-type carbonic anhydrase
AL549_RS00385	PF12849	PBP superfamily domain
AL549_RS00390	PF00691	OmpA family
AL549_RS00395	PF02321	Outer membrane efflux protein
AL549_RS00400	PF13437	HlyD family secretion protein
AL549_RS00400	PF13533	Biotin-lipoyl like
AL549_RS00405	PF00005	ABC transporter
AL549_RS00405	PF00664	ABC transporter transmembrane region
AL549_RS00410	PF12245	Bacterial Ig-like domain (group 3)
AL549_RS00415	PF04076	Bacterial OB fold (BOF) protein
AL549_RS00420	PF00072	Response regulator receiver domain
AL549_RS00420	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS00420	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS00420	PF01627	Hpt domain
AL549_RS00420	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS00425	PF00072	Response regulator receiver domain
AL549_RS00425	PF00563	EAL domain
AL549_RS00430	PF00072	Response regulator receiver domain
AL549_RS00430	PF00196	Bacterial regulatory proteins, luxR family
AL549_RS00435	PF00990	GGDEF domain
AL549_RS00440	PF00072	Response regulator receiver domain
AL549_RS00440	PF00196	Bacterial regulatory proteins, luxR family
AL549_RS00450	PF13450	NAD(P)-binding Rossmann-like domain
AL549_RS00460	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS00460	PF03466	LysR substrate binding domain
AL549_RS00465	PF00753	Metallo-beta-lactamase superfamily
AL549_RS00470	PF06629	AL549_RS00470
AL549_RS00475	PF13588	Type I restriction enzyme R protein N terminus (HSDR_N)
AL549_RS00480	PF08212	Lipocalin-like domain
AL549_RS00495	PF05708	Orthopoxvirus protein of unknown function (DUF830)
AL549_RS00500	PF05016	Plasmid stabilisation system protein
AL549_RS00505	PF04221	RelB antitoxin
AL549_RS00525	PF04664	AL549_RS00525
AL549_RS00530	PF00107	Zinc-binding dehydrogenase
AL549_RS00530	PF08240	Alcohol dehydrogenase GroES-like domain
AL549_RS00535	PF00155	Aminotransferase class I and II
AL549_RS00540	PF00657	GDSL-like Lipase/Acylhydrolase
AL549_RS00545	PF00082	Subtilase family
AL549_RS00545	PF01483	Proprotein convertase P-domain
AL549_RS00545	PF02225	PA domain
AL549_RS00545	PF05922	Peptidase inhibitor I9
AL549_RS00555	PF07690	Major Facilitator Superfamily
AL549_RS00560	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS00560	PF03466	LysR substrate binding domain
AL549_RS00565	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL549_RS00570	PF03929	AL549_RS00570
AL549_RS00580	PF00199	Catalase
AL549_RS00580	PF06628	Catalase-related immune-responsive
AL549_RS00585	PF12796	Ankyrin repeats (3 copies)
AL549_RS00590	PF00080	Copper/zinc superoxide dismutase (SODC)
AL549_RS00595	PF07361	Cytochrome b562
AL549_RS00605	PF08327	Activator of Hsp90 ATPase homolog 1-like protein
AL549_RS00610	PF02743	Cache domain
AL549_RS00610	PF13487	HD domain
AL549_RS00615	PF00892	EamA-like transporter family
AL549_RS00620	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS00620	PF03466	LysR substrate binding domain
AL549_RS00625	PF01906	Putative heavy-metal-binding
AL549_RS00630	PF11301	AL549_RS00630
AL549_RS00635	PF00672	HAMP domain
AL549_RS00635	PF00990	GGDEF domain
AL549_RS00635	PF13426	PAS domain
AL549_RS00635	PF17152	AL549_RS00635
AL549_RS00640	PF13689	AL549_RS00640
AL549_RS00645	PF00593	TonB dependent receptor
AL549_RS00645	PF07715	TonB-dependent Receptor Plug Domain
AL549_RS00650	PF13416	Bacterial extracellular solute-binding protein
AL549_RS00655	PF00056	lactate/malate dehydrogenase, NAD binding domain
AL549_RS00655	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
AL549_RS00660	PF00892	EamA-like transporter family
AL549_RS00665	PF03734	L,D-transpeptidase catalytic domain
AL549_RS00670	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS00675	PF07690	Major Facilitator Superfamily
AL549_RS00680	PF12833	Helix-turn-helix domain
AL549_RS00685	PF10928	Protein of unknown function (DUF2810)
AL549_RS00730	PF11286	AL549_RS00730
AL549_RS00735	PF04013	Putative SAM-dependent RNA methyltransferase
AL549_RS00740	PF08543	Phosphomethylpyrimidine kinase
AL549_RS00745	PF01569	PAP2 superfamily
AL549_RS00750	PF00440	Bacterial regulatory proteins, tetR family
AL549_RS00760	PF08282	haloacid dehalogenase-like hydrolase
AL549_RS00765	PF00857	Isochorismatase family
AL549_RS00770	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
AL549_RS00775	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AL549_RS00780	PF01323	DSBA-like thioredoxin domain
AL549_RS00800	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS00800	PF03466	LysR substrate binding domain
AL549_RS00805	PF00106	short chain dehydrogenase
AL549_RS00810	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS00810	PF03466	LysR substrate binding domain
AL549_RS00815	PF13460	NADH(P)-binding
AL549_RS00820	PF00072	Response regulator receiver domain
AL549_RS00820	PF00486	Transcriptional regulatory protein, C terminal
AL549_RS00825	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS00825	PF00672	HAMP domain
AL549_RS00825	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS00830	PF01219	Prokaryotic diacylglycerol kinase
AL549_RS00835	PF00884	Sulfatase
AL549_RS00835	PF08019	AL549_RS00835
AL549_RS00840	PF00884	Sulfatase
AL549_RS00845	PF03733	AL549_RS00845
AL549_RS00850	PF00128	Alpha amylase, catalytic domain
AL549_RS00860	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS00870	PF00990	GGDEF domain
AL549_RS00870	PF01590	GAF domain
AL549_RS00875	PF00892	EamA-like transporter family
AL549_RS00880	PF00155	Aminotransferase class I and II
AL549_RS00880	PF00392	Bacterial regulatory proteins, gntR family
AL549_RS00885	PF01432	Peptidase family M3
AL549_RS00905	PF00196	Bacterial regulatory proteins, luxR family
AL549_RS00910	PF02668	Taurine catabolism dioxygenase TauD, TfdA family
AL549_RS00915	PF05958	tRNA (Uracil-5-)-methyltransferase
AL549_RS00920	PF00881	Nitroreductase family
AL549_RS00925	PF00753	Metallo-beta-lactamase superfamily
AL549_RS00930	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS00930	PF03466	LysR substrate binding domain
AL549_RS00940	PF00440	Bacterial regulatory proteins, tetR family
AL549_RS00940	PF14246	AefR-like transcriptional repressor, C-terminal region
AL549_RS00950	PF01103	Surface antigen
AL549_RS00955	PF13265	AL549_RS00955
AL549_RS00960	PF00375	Sodium:dicarboxylate symporter family
AL549_RS00965	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS00965	PF03466	LysR substrate binding domain
AL549_RS00970	PF00764	Arginosuccinate synthase
AL549_RS00975	PF10014	2OG-Fe dioxygenase
AL549_RS00980	PF00892	EamA-like transporter family
AL549_RS00985	PF14534	Domain of unknown function (DUF4440)
AL549_RS00990	PF01638	HxlR-like helix-turn-helix
AL549_RS00995	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS00995	PF03466	LysR substrate binding domain
AL549_RS01005	PF00027	Cyclic nucleotide-binding domain
AL549_RS01010	PF00313	'Cold-shock' DNA-binding domain
AL549_RS01010	PF06961	AL549_RS01010
AL549_RS01015	PF01048	Phosphorylase superfamily
AL549_RS01020	PF04973	AL549_RS01020
AL549_RS01030	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL549_RS01030	PF12793	AL549_RS01030
AL549_RS01035	PF07690	Major Facilitator Superfamily
AL549_RS01040	PF04247	AL549_RS01040
AL549_RS01045	PF01752	Collagenase
AL549_RS01045	PF04151	Bacterial pre-peptidase C-terminal domain
AL549_RS01045	PF08453	Peptidase family M9 N-terminal
AL549_RS01050	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS01050	PF03466	LysR substrate binding domain
AL549_RS01055	PF01048	Phosphorylase superfamily
AL549_RS01060	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS01065	PF00703	Glycosyl hydrolases family 2
AL549_RS01070	PF00384	Molybdopterin oxidoreductase
AL549_RS01070	PF01568	Molydopterin dinucleotide binding domain
AL549_RS01070	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL549_RS01070	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL549_RS01070	PF12838	4Fe-4S dicluster domain
AL549_RS01070	PF13510	2Fe-2S iron-sulfur cluster binding domain
AL549_RS01070	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
AL549_RS01080	PF12710	haloacid dehalogenase-like hydrolase
AL549_RS01085	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL549_RS01090	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL549_RS01095	PF00892	EamA-like transporter family
AL549_RS01100	PF00155	Aminotransferase class I and II
AL549_RS01100	PF00392	Bacterial regulatory proteins, gntR family
AL549_RS01110	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL549_RS01110	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL549_RS01110	PF02378	Phosphotransferase system, EIIC
AL549_RS01115	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL549_RS01120	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL549_RS01125	PF12833	Helix-turn-helix domain
AL549_RS01130	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL549_RS01130	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL549_RS01130	PF02378	Phosphotransferase system, EIIC
AL549_RS01135	PF01238	Phosphomannose isomerase type I
AL549_RS01150	PF09313	Domain of unknown function (DUF1971)
AL549_RS01155	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL549_RS01160	PF00258	Flavodoxin
AL549_RS01160	PF00301	Rubredoxin
AL549_RS01160	PF00753	Metallo-beta-lactamase superfamily
AL549_RS01165	PF00158	Sigma-54 interaction domain
AL549_RS01165	PF01590	GAF domain
AL549_RS01185	PF06445	GyrI-like small molecule binding domain
AL549_RS01185	PF12833	Helix-turn-helix domain
AL549_RS01190	PF00593	TonB dependent receptor
AL549_RS01190	PF07715	TonB-dependent Receptor Plug Domain
AL549_RS01195	PF01593	Flavin containing amine oxidoreductase
AL549_RS01200	PF11953	Domain of unknown function (DUF3470)
AL549_RS01200	PF13187	4Fe-4S dicluster domain
AL549_RS01205	PF00588	SpoU rRNA Methylase family
AL549_RS01215	PF13347	MFS/sugar transport protein
AL549_RS01220	PF02065	Melibiase
AL549_RS01220	PF16874	AL549_RS01220
AL549_RS01220	PF16875	AL549_RS01220
AL549_RS01225	PF00703	Glycosyl hydrolases family 2
AL549_RS01225	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
AL549_RS01225	PF02837	Glycosyl hydrolases family 2, sugar binding domain
AL549_RS01225	PF02929	Beta galactosidase small chain
AL549_RS01225	PF16353	AL549_RS01225
AL549_RS01230	PF13407	Periplasmic binding protein domain
AL549_RS01235	PF00005	ABC transporter
AL549_RS01240	PF02653	AL549_RS01240
AL549_RS01245	PF00356	Bacterial regulatory proteins, lacI family
AL549_RS01245	PF13377	Periplasmic binding protein-like domain
AL549_RS01250	PF00440	Bacterial regulatory proteins, tetR family
AL549_RS01260	PF00873	AcrB/AcrD/AcrF family
AL549_RS01265	PF00990	GGDEF domain
AL549_RS01265	PF01590	GAF domain
AL549_RS01270	PF00849	RNA pseudouridylate synthase
AL549_RS01280	PF13289	AL549_RS01280
AL549_RS01290	PF00583	Acetyltransferase (GNAT) family
AL549_RS01295	PF08681	Protein of unknown function (DUF1778)
AL549_RS01300	PF11168	AL549_RS01300
AL549_RS01305	PF00529	HlyD family secretion protein
AL549_RS01305	PF16576	AL549_RS01305
AL549_RS01315	PF01554	MatE
AL549_RS01320	PF00933	Glycosyl hydrolase family 3 N terminal domain
AL549_RS01320	PF01915	Glycosyl hydrolase family 3 C-terminal domain
AL549_RS01320	PF14310	Fibronectin type III-like domain
AL549_RS01325	PF02311	AraC-like ligand binding domain
AL549_RS01325	PF12833	Helix-turn-helix domain
AL549_RS01330	PF02264	LamB porin
AL549_RS01335	PF00722	Glycosyl hydrolases family 16
AL549_RS01345	PF00356	Bacterial regulatory proteins, lacI family
AL549_RS01345	PF13377	Periplasmic binding protein-like domain
AL549_RS01355	PF00005	ABC transporter
AL549_RS01355	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL549_RS01360	PF00005	ABC transporter
AL549_RS01360	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL549_RS01365	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS01370	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS01375	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL549_RS01380	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS01385	PF00356	Bacterial regulatory proteins, lacI family
AL549_RS01385	PF13377	Periplasmic binding protein-like domain
AL549_RS01390	PF00005	ABC transporter
AL549_RS01395	PF00232	Glycosyl hydrolase family 1
AL549_RS01400	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS01405	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS01410	PF13416	Bacterial extracellular solute-binding protein
AL549_RS01415	PF00356	Bacterial regulatory proteins, lacI family
AL549_RS01415	PF13377	Periplasmic binding protein-like domain
AL549_RS01420	PF02264	LamB porin
AL549_RS01430	PF00174	Oxidoreductase molybdopterin binding domain
AL549_RS01435	PF00990	GGDEF domain
AL549_RS01440	PF00072	Response regulator receiver domain
AL549_RS01440	PF00486	Transcriptional regulatory protein, C terminal
AL549_RS01445	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS01445	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS01445	PF08521	AL549_RS01445
AL549_RS01450	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS01455	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS01455	PF03466	LysR substrate binding domain
AL549_RS01460	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL549_RS01465	PF00675	Insulinase (Peptidase family M16)
AL549_RS01465	PF05193	Peptidase M16 inactive domain
AL549_RS01470	PF02690	AL549_RS01470
AL549_RS01475	PF01966	HD domain
AL549_RS01480	PF02798	Glutathione S-transferase, N-terminal domain
AL549_RS01480	PF13410	Glutathione S-transferase, C-terminal domain
AL549_RS01485	PF00171	Aldehyde dehydrogenase family
AL549_RS01490	PF00563	EAL domain
AL549_RS01500	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS01500	PF00672	HAMP domain
AL549_RS01505	PF12710	haloacid dehalogenase-like hydrolase
AL549_RS01510	PF13505	Outer membrane protein beta-barrel domain
AL549_RS01515	PF02839	Carbohydrate binding domain
AL549_RS01515	PF03067	Chitin binding domain
AL549_RS01520	PF01470	Pyroglutamyl peptidase
AL549_RS01530	PF01037	AsnC family
AL549_RS01530	PF13412	Winged helix-turn-helix DNA-binding
AL549_RS01535	PF01810	AL549_RS01535
AL549_RS01540	PF00919	Uncharacterized protein family UPF0004
AL549_RS01540	PF04055	Radical SAM superfamily
AL549_RS01545	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS01545	PF00672	HAMP domain
AL549_RS01550	PF00128	Alpha amylase, catalytic domain
AL549_RS01550	PF02806	Alpha amylase, C-terminal all-beta domain
AL549_RS01550	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL549_RS01555	PF02446	4-alpha-glucanotransferase
AL549_RS01560	PF00343	Carbohydrate phosphorylase
AL549_RS01565	PF00196	Bacterial regulatory proteins, luxR family
AL549_RS01570	PF04018	AL549_RS01570
AL549_RS01580	PF02630	SCO1/SenC
AL549_RS01585	PF04314	Protein of unknown function (DUF461)
AL549_RS01590	PF03193	Protein of unknown function, DUF258
AL549_RS01595	PF00375	Sodium:dicarboxylate symporter family
AL549_RS01600	PF08543	Phosphomethylpyrimidine kinase
AL549_RS01605	PF13520	Amino acid permease
AL549_RS01610	PF01276	Orn/Lys/Arg decarboxylase, major domain
AL549_RS01610	PF03709	Orn/Lys/Arg decarboxylase, N-terminal domain
AL549_RS01610	PF03711	Orn/Lys/Arg decarboxylase, C-terminal domain
AL549_RS01625	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL549_RS01625	PF03714	Bacterial pullanase-associated domain
AL549_RS01625	PF11852	Domain of unknown function (DUF3372)
AL549_RS01630	PF08238	Sel1 repeat
AL549_RS01635	PF00128	Alpha amylase, catalytic domain
AL549_RS01640	PF13416	Bacterial extracellular solute-binding protein
AL549_RS01645	PF06202	Amylo-alpha-1,6-glucosidase
AL549_RS01650	PF07148	AL549_RS01650
AL549_RS01655	PF02264	LamB porin
AL549_RS01660	PF00128	Alpha amylase, catalytic domain
AL549_RS01660	PF02922	Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
AL549_RS01665	PF00990	GGDEF domain
AL549_RS01665	PF17201	AL549_RS01665
AL549_RS01670	PF00990	GGDEF domain
AL549_RS01680	PF02678	Pirin
AL549_RS01680	PF05726	Pirin C-terminal cupin domain
AL549_RS01685	PF06865	Protein of unknown function (DUF1255)
AL549_RS01690	PF11012	AL549_RS01690
AL549_RS01695	PF00704	Glycosyl hydrolases family 18
AL549_RS01695	PF02010	AL549_RS01695
AL549_RS01695	PF02839	Carbohydrate binding domain
AL549_RS01695	PF08329	Chitinase A, N-terminal domain
AL549_RS01700	PF08386	TAP-like protein
AL549_RS01700	PF12146	Putative lysophospholipase
AL549_RS01705	PF00440	Bacterial regulatory proteins, tetR family
AL549_RS01710	PF01757	AL549_RS01710
AL549_RS01715	PF03600	Citrate transporter
AL549_RS01720	PF04994	TfoX C-terminal domain
AL549_RS01725	PF04828	Glutathione-dependent formaldehyde-activating enzyme
AL549_RS01730	PF02588	AL549_RS01730
AL549_RS01735	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
AL549_RS01735	PF02870	6-O-methylguanine DNA methyltransferase, ribonuclease-like domain
AL549_RS01740	PF02805	Metal binding domain of Ada
AL549_RS01740	PF06029	AlkA N-terminal domain
AL549_RS01740	PF12833	Helix-turn-helix domain
AL549_RS01750	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS01750	PF03466	LysR substrate binding domain
AL549_RS01755	PF04219	AL549_RS01755
AL549_RS01760	PF02951	Prokaryotic glutathione synthetase, N-terminal domain
AL549_RS01760	PF02955	Prokaryotic glutathione synthetase, ATP-grasp domain
AL549_RS01765	PF05013	N-formylglutamate amidohydrolase
AL549_RS01765	PF08014	AL549_RS01765
AL549_RS01770	PF11280	AL549_RS01770
AL549_RS01775	PF01182	Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
AL549_RS01785	PF03616	AL549_RS01785
AL549_RS01790	PF03616	AL549_RS01790
AL549_RS01795	PF14247	AL549_RS01795
AL549_RS01800	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS01800	PF00672	HAMP domain
AL549_RS01800	PF17200	AL549_RS01800
AL549_RS01805	PF00072	Response regulator receiver domain
AL549_RS01805	PF04397	LytTr DNA-binding domain
AL549_RS01810	PF06580	AL549_RS01810
AL549_RS01820	PF17131	AL549_RS01820
AL549_RS01825	PF02687	AL549_RS01825
AL549_RS01825	PF12704	MacB-like periplasmic core domain
AL549_RS01830	PF00005	ABC transporter
AL549_RS01840	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS01840	PF03466	LysR substrate binding domain
AL549_RS01845	PF11391	AL549_RS01845
AL549_RS01850	PF01709	Transcriptional regulator
AL549_RS01855	PF11686	AL549_RS01855
AL549_RS01860	PF00072	Response regulator receiver domain
AL549_RS01860	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS01860	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS01860	PF17149	AL549_RS01860
AL549_RS01865	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS01870	PF01609	Transposase DDE domain
AL549_RS01870	PF13006	AL549_RS01870
AL549_RS01875	PF00925	GTP cyclohydrolase II
AL549_RS01885	PF00005	ABC transporter
AL549_RS01890	PF00005	ABC transporter
AL549_RS01890	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL549_RS01900	PF11826	AL549_RS01900
AL549_RS01905	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AL549_RS01910	PF02195	ParB-like nuclease domain
AL549_RS01915	PF05127	Helicase
AL549_RS01915	PF08351	Domain of unknown function (DUF1726)
AL549_RS01915	PF13718	GNAT acetyltransferase 2
AL549_RS01920	PF13466	STAS domain
AL549_RS01925	PF00072	Response regulator receiver domain
AL549_RS01930	PF01584	CheW-like domain
AL549_RS01930	PF01627	Hpt domain
AL549_RS01930	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS01930	PF02895	Signal transducing histidine kinase, homodimeric domain
AL549_RS01935	PF01584	CheW-like domain
AL549_RS01940	PF01584	CheW-like domain
AL549_RS01945	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS01945	PF13188	PAS domain
AL549_RS01945	PF13426	PAS domain
AL549_RS01950	PF01739	CheR methyltransferase, SAM binding domain
AL549_RS01950	PF03705	CheR methyltransferase, all-alpha domain
AL549_RS01955	PF03975	CheD chemotactic sensory transduction
AL549_RS01960	PF00072	Response regulator receiver domain
AL549_RS01960	PF01339	CheB methylesterase
AL549_RS01965	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS01970	PF01740	STAS domain
AL549_RS01975	PF00072	Response regulator receiver domain
AL549_RS01975	PF07228	Stage II sporulation protein E (SpoIIE)
AL549_RS01975	PF13581	Histidine kinase-like ATPase domain
AL549_RS01980	PF03961	AL549_RS01980
AL549_RS01985	PF12796	Ankyrin repeats (3 copies)
AL549_RS01990	PF13353	4Fe-4S single cluster domain
AL549_RS01995	PF02223	Thymidylate kinase
AL549_RS02000	PF07308	AL549_RS02000
AL549_RS02005	PF06674	AL549_RS02005
AL549_RS02010	PF01039	Carboxyl transferase domain
AL549_RS02015	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS02015	PF03466	LysR substrate binding domain
AL549_RS02020	PF01752	Collagenase
AL549_RS02020	PF04151	Bacterial pre-peptidase C-terminal domain
AL549_RS02020	PF08453	Peptidase family M9 N-terminal
AL549_RS02025	PF00300	Histidine phosphatase superfamily (branch 1)
AL549_RS02030	PF00563	EAL domain
AL549_RS02035	PF13609	Gram-negative porin
AL549_RS02040	PF00367	phosphotransferase system, EIIB
AL549_RS02040	PF02378	Phosphotransferase system, EIIC
AL549_RS02045	PF01380	SIS domain
AL549_RS02050	PF01380	SIS domain
AL549_RS02050	PF01418	Helix-turn-helix domain, rpiR family
AL549_RS02055	PF01189	NOL1/NOP2/sun family
AL549_RS02065	PF00132	Bacterial transferase hexapeptide (six repeats)
AL549_RS02065	PF12464	Maltose acetyltransferase
AL549_RS02070	PF00166	Chaperonin 10 Kd subunit
AL549_RS02075	PF00118	TCP-1/cpn60 chaperonin family
AL549_RS02085	PF03358	NADPH-dependent FMN reductase
AL549_RS02090	PF00005	ABC transporter
AL549_RS02090	PF00664	ABC transporter transmembrane region
AL549_RS02095	PF00563	EAL domain
AL549_RS02095	PF00990	GGDEF domain
AL549_RS02095	PF16448	AL549_RS02095
AL549_RS02100	PF06035	Bacterial transglutaminase-like cysteine proteinase BTLCP
AL549_RS02105	PF13437	HlyD family secretion protein
AL549_RS02105	PF13533	Biotin-lipoyl like
AL549_RS02110	PF00072	Response regulator receiver domain
AL549_RS02110	PF02954	Bacterial regulatory protein, Fis family
AL549_RS02110	PF14532	Sigma-54 interaction domain
AL549_RS02115	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS02115	PF02743	Cache domain
AL549_RS02120	PF01243	Pyridoxamine 5'-phosphate oxidase
AL549_RS02120	PF10590	Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
AL549_RS02125	PF00196	Bacterial regulatory proteins, luxR family
AL549_RS02125	PF08448	PAS fold
AL549_RS02130	PF12833	Helix-turn-helix domain
AL549_RS02135	PF00171	Aldehyde dehydrogenase family
AL549_RS02135	PF01619	Proline dehydrogenase
AL549_RS02135	PF14850	DNA-binding domain of Proline dehydrogenase
AL549_RS02145	PF00474	Sodium:solute symporter family
AL549_RS02150	PF01037	AsnC family
AL549_RS02150	PF13412	Winged helix-turn-helix DNA-binding
AL549_RS02155	PF04286	AL549_RS02155
AL549_RS02160	PF02278	Polysaccharide lyase family 8, super-sandwich domain
AL549_RS02160	PF02884	Polysaccharide lyase family 8, C-terminal beta-sandwich domain
AL549_RS02160	PF08124	Polysaccharide lyase family 8, N terminal alpha-helical domain
AL549_RS02165	PF00884	Sulfatase
AL549_RS02165	PF16385	AL549_RS02165
AL549_RS02170	PF00884	Sulfatase
AL549_RS02175	PF04055	Radical SAM superfamily
AL549_RS02175	PF13186	Iron-sulfur cluster-binding domain
AL549_RS02180	PF00884	Sulfatase
AL549_RS02180	PF16347	AL549_RS02180
AL549_RS02185	PF10022	AL549_RS02185
AL549_RS02190	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL549_RS02195	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS02200	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS02200	PF12911	AL549_RS02200
AL549_RS02205	PF00005	ABC transporter
AL549_RS02205	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL549_RS02210	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS02210	PF00672	HAMP domain
AL549_RS02215	PF04982	AL549_RS02215
AL549_RS02220	PF03573	outer membrane porin, OprD family
AL549_RS02225	PF00916	AL549_RS02225
AL549_RS02230	PF16363	AL549_RS02230
AL549_RS02235	PF01087	Galactose-1-phosphate uridyl transferase, N-terminal domain
AL549_RS02235	PF02744	Galactose-1-phosphate uridyl transferase, C-terminal domain
AL549_RS02240	PF13561	Enoyl-(Acyl carrier protein) reductase
AL549_RS02245	PF07470	Glycosyl Hydrolase Family 88
AL549_RS02250	PF09508	Lacto-N-biose phosphorylase
AL549_RS02255	PF02278	Polysaccharide lyase family 8, super-sandwich domain
AL549_RS02255	PF08124	Polysaccharide lyase family 8, N terminal alpha-helical domain
AL549_RS02260	PF00005	ABC transporter
AL549_RS02260	PF00664	ABC transporter transmembrane region
AL549_RS02265	PF02274	Amidinotransferase
AL549_RS02275	PF01261	Xylose isomerase-like TIM barrel
AL549_RS02280	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL549_RS02285	PF08282	haloacid dehalogenase-like hydrolase
AL549_RS02290	PF00596	Class II Aldolase and Adducin N-terminal domain
AL549_RS02295	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL549_RS02300	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL549_RS02300	PF03611	AL549_RS02300
AL549_RS02305	PF00455	AL549_RS02305
AL549_RS02305	PF08220	DeoR-like helix-turn-helix domain
AL549_RS02310	PF13483	Beta-lactamase superfamily domain
AL549_RS02315	PF00724	NADH:flavin oxidoreductase / NADH oxidase family
AL549_RS02320	PF04399	Glutaredoxin 2, C terminal domain
AL549_RS02320	PF13417	Glutathione S-transferase, N-terminal domain
AL549_RS02325	PF13561	Enoyl-(Acyl carrier protein) reductase
AL549_RS02330	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS02330	PF03466	LysR substrate binding domain
AL549_RS02335	PF10688	AL549_RS02335
AL549_RS02340	PF01081	KDPG and KHG aldolase
AL549_RS02345	PF00294	pfkB family carbohydrate kinase
AL549_RS02350	PF02614	Glucuronate isomerase
AL549_RS02355	PF01232	Mannitol dehydrogenase Rossmann domain
AL549_RS02355	PF08125	Mannitol dehydrogenase C-terminal domain
AL549_RS02360	PF06808	AL549_RS02360
AL549_RS02365	PF04290	AL549_RS02365
AL549_RS02370	PF03480	Bacterial extracellular solute-binding protein, family 7
AL549_RS02375	PF00392	Bacterial regulatory proteins, gntR family
AL549_RS02375	PF07729	FCD domain
AL549_RS02380	PF03786	D-mannonate dehydratase (UxuA)
AL549_RS02385	PF00270	DEAD/DEAH box helicase
AL549_RS02385	PF00271	Helicase conserved C-terminal domain
AL549_RS02390	PF00155	Aminotransferase class I and II
AL549_RS02395	PF03553	AL549_RS02395
AL549_RS02400	PF00356	Bacterial regulatory proteins, lacI family
AL549_RS02400	PF13377	Periplasmic binding protein-like domain
AL549_RS02405	PF00857	Isochorismatase family
AL549_RS02410	PF01276	Orn/Lys/Arg decarboxylase, major domain
AL549_RS02415	PF00501	AMP-binding enzyme
AL549_RS02415	PF00892	EamA-like transporter family
AL549_RS02420	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS02420	PF03466	LysR substrate binding domain
AL549_RS02425	PF03473	MOSC domain
AL549_RS02425	PF03475	3-alpha domain
AL549_RS02435	PF12833	Helix-turn-helix domain
AL549_RS02440	PF08240	Alcohol dehydrogenase GroES-like domain
AL549_RS02445	PF02056	Family 4 glycosyl hydrolase
AL549_RS02445	PF11975	Family 4 glycosyl hydrolase C-terminal domain
AL549_RS02450	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS02450	PF03466	LysR substrate binding domain
AL549_RS02465	PF12833	Helix-turn-helix domain
AL549_RS02465	PF12852	Cupin
AL549_RS02470	PF00462	Glutaredoxin
AL549_RS02475	PF04224	AL549_RS02475
AL549_RS02485	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS02485	PF00672	HAMP domain
AL549_RS02485	PF12729	AL549_RS02485
AL549_RS02490	PF01547	Bacterial extracellular solute-binding protein
AL549_RS02495	PF11212	AL549_RS02495
AL549_RS02500	PF11730	AL549_RS02500
AL549_RS02505	PF01625	Peptide methionine sulfoxide reductase
AL549_RS02510	PF01641	SelR domain
AL549_RS02515	PF08238	Sel1 repeat
AL549_RS02520	PF06055	AL549_RS02520
AL549_RS02525	PF01872	RibD C-terminal domain
AL549_RS02530	PF13508	Acetyltransferase (GNAT) domain
AL549_RS02535	PF00753	Metallo-beta-lactamase superfamily
AL549_RS02535	PF14863	Alkyl sulfatase dimerisation
AL549_RS02535	PF14864	Alkyl sulfatase C-terminal
AL549_RS02540	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS02540	PF03466	LysR substrate binding domain
AL549_RS02545	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
AL549_RS02545	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
AL549_RS02550	PF12833	Helix-turn-helix domain
AL549_RS02555	PF00892	EamA-like transporter family
AL549_RS02560	PF00455	AL549_RS02560
AL549_RS02560	PF08220	DeoR-like helix-turn-helix domain
AL549_RS02565	PF00455	AL549_RS02565
AL549_RS02565	PF08220	DeoR-like helix-turn-helix domain
AL549_RS02570	PF08013	Tagatose 6 phosphate kinase
AL549_RS02575	PF01380	SIS domain
AL549_RS02580	PF03830	PTS system sorbose subfamily IIB component
AL549_RS02585	PF03609	AL549_RS02585
AL549_RS02590	PF03613	AL549_RS02590
AL549_RS02595	PF03610	PTS system fructose IIA component
AL549_RS02600	PF01979	Amidohydrolase family
AL549_RS02605	PF01116	Fructose-bisphosphate aldolase class-II
AL549_RS02610	PF00005	ABC transporter
AL549_RS02610	PF12848	ABC transporter
AL549_RS02615	PF07715	TonB-dependent Receptor Plug Domain
AL549_RS02620	PF00392	Bacterial regulatory proteins, gntR family
AL549_RS02620	PF07729	FCD domain
AL549_RS02625	PF01032	FecCD transport family
AL549_RS02630	PF01497	Periplasmic binding protein
AL549_RS02635	PF00005	ABC transporter
AL549_RS02650	PF16576	AL549_RS02650
AL549_RS02655	PF02321	Outer membrane efflux protein
AL549_RS02660	PF02687	AL549_RS02660
AL549_RS02660	PF12704	MacB-like periplasmic core domain
AL549_RS02665	PF02687	AL549_RS02665
AL549_RS02665	PF12704	MacB-like periplasmic core domain
AL549_RS02670	PF00005	ABC transporter
AL549_RS02675	PF00929	Exonuclease
AL549_RS02680	PF07690	Major Facilitator Superfamily
AL549_RS02690	PF02275	Linear amide C-N hydrolases, choloylglycine hydrolase family
AL549_RS02695	PF00990	GGDEF domain
AL549_RS02700	PF01389	OmpA-like transmembrane domain
AL549_RS02705	PF08908	AL549_RS02705
AL549_RS02710	PF01717	Cobalamin-independent synthase, Catalytic domain
AL549_RS02715	PF11168	AL549_RS02715
AL549_RS02715	PF13515	AL549_RS02715
AL549_RS02720	PF13437	HlyD family secretion protein
AL549_RS02720	PF13533	Biotin-lipoyl like
AL549_RS02725	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS02725	PF03466	LysR substrate binding domain
AL549_RS02730	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS02730	PF00672	HAMP domain
AL549_RS02730	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS02735	PF00072	Response regulator receiver domain
AL549_RS02735	PF00486	Transcriptional regulatory protein, C terminal
AL549_RS02740	PF11777	AL549_RS02740
AL549_RS02745	PF00753	Metallo-beta-lactamase superfamily
AL549_RS02745	PF14863	Alkyl sulfatase dimerisation
AL549_RS02745	PF14864	Alkyl sulfatase C-terminal
AL549_RS02755	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS02755	PF13426	PAS domain
AL549_RS02760	PF00072	Response regulator receiver domain
AL549_RS02760	PF00158	Sigma-54 interaction domain
AL549_RS02760	PF02954	Bacterial regulatory protein, Fis family
AL549_RS02765	PF16868	AL549_RS02765
AL549_RS02770	PF06808	AL549_RS02770
AL549_RS02775	PF01266	FAD dependent oxidoreductase
AL549_RS02780	PF11777	AL549_RS02780
AL549_RS02785	PF00072	Response regulator receiver domain
AL549_RS02785	PF13487	HD domain
AL549_RS02790	PF00072	Response regulator receiver domain
AL549_RS02790	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS02790	PF00989	PAS fold
AL549_RS02790	PF01627	Hpt domain
AL549_RS02790	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS02795	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS02795	PF00672	HAMP domain
AL549_RS02800	PF07883	Cupin domain
AL549_RS02805	PF00805	Pentapeptide repeats (8 copies)
AL549_RS02805	PF13599	Pentapeptide repeats (9 copies)
AL549_RS02810	PF07073	Modulator of Rho-dependent transcription termination (ROF)
AL549_RS02815	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
AL549_RS02815	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AL549_RS02820	PF01447	Thermolysin metallopeptidase, catalytic domain
AL549_RS02820	PF02868	Thermolysin metallopeptidase, alpha-helical domain
AL549_RS02820	PF03413	Peptidase propeptide and YPEB domain
AL549_RS02820	PF04151	Bacterial pre-peptidase C-terminal domain
AL549_RS02820	PF07504	Fungalysin/Thermolysin Propeptide Motif
AL549_RS02825	PF06041	Bacterial protein of unknown function (DUF924)
AL549_RS02830	PF01841	Transglutaminase-like superfamily
AL549_RS02840	PF12697	Alpha/beta hydrolase family
AL549_RS02850	PF00270	DEAD/DEAH box helicase
AL549_RS02850	PF00271	Helicase conserved C-terminal domain
AL549_RS02855	PF00561	alpha/beta hydrolase fold
AL549_RS02860	PF00881	Nitroreductase family
AL549_RS02865	PF03992	Antibiotic biosynthesis monooxygenase
AL549_RS02870	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS02870	PF03466	LysR substrate binding domain
AL549_RS02875	PF13279	Thioesterase-like superfamily
AL549_RS02880	PF00175	Oxidoreductase NAD-binding domain
AL549_RS02880	PF00970	Oxidoreductase FAD-binding domain
AL549_RS02885	PF00892	EamA-like transporter family
AL549_RS02890	PF09829	AL549_RS02890
AL549_RS02895	PF10973	AL549_RS02895
AL549_RS02900	PF00892	EamA-like transporter family
AL549_RS02905	PF01757	AL549_RS02905
AL549_RS02910	PF07690	Major Facilitator Superfamily
AL549_RS02915	PF02311	AraC-like ligand binding domain
AL549_RS02915	PF12833	Helix-turn-helix domain
AL549_RS02930	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS02930	PF03466	LysR substrate binding domain
AL549_RS02935	PF07519	Tannase and feruloyl esterase
AL549_RS02945	PF06942	AL549_RS02945
AL549_RS02950	PF00034	Cytochrome c
AL549_RS02950	PF03150	Di-haem cytochrome c peroxidase
AL549_RS02960	PF02001	AL549_RS02960
AL549_RS02965	PF02579	Dinitrogenase iron-molybdenum cofactor
AL549_RS02970	PF04400	AL549_RS02970
AL549_RS02975	PF00009	Elongation factor Tu GTP binding domain
AL549_RS02975	PF00679	Elongation factor G C-terminus
AL549_RS02975	PF03764	Elongation factor G, domain IV
AL549_RS02975	PF14492	Elongation Factor G, domain II
AL549_RS02980	PF00583	Acetyltransferase (GNAT) family
AL549_RS02985	PF00672	HAMP domain
AL549_RS02985	PF00990	GGDEF domain
AL549_RS02990	PF13458	Periplasmic binding protein
AL549_RS02995	PF13416	Bacterial extracellular solute-binding protein
AL549_RS03000	PF00672	HAMP domain
AL549_RS03000	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS03005	PF00072	Response regulator receiver domain
AL549_RS03005	PF00486	Transcriptional regulatory protein, C terminal
AL549_RS03010	PF00367	phosphotransferase system, EIIB
AL549_RS03010	PF02378	Phosphotransferase system, EIIC
AL549_RS03015	PF07690	Major Facilitator Superfamily
AL549_RS03020	PF13411	MerR HTH family regulatory protein
AL549_RS03025	PF04244	Deoxyribodipyrimidine photo-lyase-related protein
AL549_RS03030	PF12833	Helix-turn-helix domain
AL549_RS03035	PF01161	Phosphatidylethanolamine-binding protein
AL549_RS03040	PF00293	NUDIX domain
AL549_RS03045	PF00072	Response regulator receiver domain
AL549_RS03045	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS03045	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS03050	PF00174	Oxidoreductase molybdopterin binding domain
AL549_RS03055	PF16576	AL549_RS03055
AL549_RS03060	PF00873	AcrB/AcrD/AcrF family
AL549_RS03070	PF00924	Mechanosensitive ion channel
AL549_RS03075	PF00583	Acetyltransferase (GNAT) family
AL549_RS03080	PF13449	Esterase-like activity of phytase
AL549_RS03085	PF00924	Mechanosensitive ion channel
AL549_RS03090	PF00583	Acetyltransferase (GNAT) family
AL549_RS03090	PF00795	Carbon-nitrogen hydrolase
AL549_RS03095	PF10000	ACT domain
AL549_RS03095	PF13840	ACT domain
AL549_RS03100	PF11840	AL549_RS03100
AL549_RS03105	PF00929	Exonuclease
AL549_RS03110	PF00571	CBS domain
AL549_RS03110	PF03445	AL549_RS03110
AL549_RS03110	PF10335	AL549_RS03110
AL549_RS03115	PF01614	Bacterial transcriptional regulator
AL549_RS03115	PF09339	IclR helix-turn-helix domain
AL549_RS03120	PF13561	Enoyl-(Acyl carrier protein) reductase
AL549_RS03125	PF10688	AL549_RS03125
AL549_RS03130	PF07883	Cupin domain
AL549_RS03135	PF02502	Ribose/Galactose Isomerase
AL549_RS03135	PF12408	Ribose-5-phosphate isomerase
AL549_RS03150	PF00892	EamA-like transporter family
AL549_RS03155	PF00294	pfkB family carbohydrate kinase
AL549_RS03160	PF01081	KDPG and KHG aldolase
AL549_RS03165	PF00754	F5/8 type C domain
AL549_RS03170	PF06917	Periplasmic pectate lyase
AL549_RS03175	PF00474	Sodium:solute symporter family
AL549_RS03180	PF06178	Oligogalacturonate-specific porin protein (KdgM)
AL549_RS03190	PF00474	Sodium:solute symporter family
AL549_RS03195	PF14583	Oligogalacturonate lyase
AL549_RS03200	PF00128	Alpha amylase, catalytic domain
AL549_RS03205	PF03625	Domain of unknown function DUF302
AL549_RS03210	PF07670	Nucleoside recognition
AL549_RS03215	PF07670	Nucleoside recognition
AL549_RS03220	PF01546	Peptidase family M20/M25/M40
AL549_RS03220	PF07687	Peptidase dimerisation domain
AL549_RS03230	PF06863	Protein of unknown function (DUF1254)
AL549_RS03240	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS03240	PF03466	LysR substrate binding domain
AL549_RS03245	PF06742	Protein of unknown function (DUF1214)
AL549_RS03245	PF06863	Protein of unknown function (DUF1254)
AL549_RS03250	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS03255	PF01022	Bacterial regulatory protein, arsR family
AL549_RS03260	PF01758	Sodium Bile acid symporter family
AL549_RS03265	PF01230	HIT domain
AL549_RS03270	PF13670	AL549_RS03270
AL549_RS03275	PF01292	Prokaryotic cytochrome b561
AL549_RS03280	PF00884	Sulfatase
AL549_RS03280	PF08019	AL549_RS03280
AL549_RS03285	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS03285	PF03466	LysR substrate binding domain
AL549_RS03290	PF12688	Tetratrico peptide repeat
AL549_RS03295	PF00753	Metallo-beta-lactamase superfamily
AL549_RS03295	PF14863	Alkyl sulfatase dimerisation
AL549_RS03295	PF14864	Alkyl sulfatase C-terminal
AL549_RS03305	PF16576	AL549_RS03305
AL549_RS03310	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS03315	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL549_RS03320	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL549_RS03320	PF02894	Oxidoreductase family, C-terminal alpha/beta domain
AL549_RS03325	PF00579	tRNA synthetases class I (W and Y)
AL549_RS03325	PF01479	S4 domain
AL549_RS03330	PF00196	Bacterial regulatory proteins, luxR family
AL549_RS03335	PF02567	Phenazine biosynthesis-like protein
AL549_RS03340	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS03340	PF03466	LysR substrate binding domain
AL549_RS03345	PF02798	Glutathione S-transferase, N-terminal domain
AL549_RS03350	PF13407	Periplasmic binding protein domain
AL549_RS03355	PF00990	GGDEF domain
AL549_RS03355	PF08447	PAS fold
AL549_RS03355	PF13426	PAS domain
AL549_RS03360	PF00158	Sigma-54 interaction domain
AL549_RS03360	PF01590	GAF domain
AL549_RS03360	PF02954	Bacterial regulatory protein, Fis family
AL549_RS03365	PF00171	Aldehyde dehydrogenase family
AL549_RS03370	PF00583	Acetyltransferase (GNAT) family
AL549_RS03375	PF01595	AL549_RS03375
AL549_RS03375	PF03471	Transporter associated domain
AL549_RS03380	PF10462	Peptidase M66
AL549_RS03380	PF12561	AL549_RS03380
AL549_RS03385	PF01327	Polypeptide deformylase
AL549_RS03390	PF03611	AL549_RS03390
AL549_RS03395	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL549_RS03400	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL549_RS03405	PF00356	Bacterial regulatory proteins, lacI family
AL549_RS03405	PF13377	Periplasmic binding protein-like domain
AL549_RS03410	PF00175	Oxidoreductase NAD-binding domain
AL549_RS03410	PF01794	AL549_RS03410
AL549_RS03410	PF08022	AL549_RS03410
AL549_RS03425	PF00005	ABC transporter
AL549_RS03430	PF03222	Tryptophan/tyrosine permease family
AL549_RS03435	PF01212	Beta-eliminating lyase
AL549_RS03445	PF00873	AcrB/AcrD/AcrF family
AL549_RS03450	PF11604	Copper binding periplasmic protein CusF
AL549_RS03450	PF16576	AL549_RS03450
AL549_RS03455	PF02321	Outer membrane efflux protein
AL549_RS03465	PF00753	Metallo-beta-lactamase superfamily
AL549_RS03470	PF05618	Putative ATP-dependant zinc protease
AL549_RS03475	PF08443	RimK-like ATP-grasp domain
AL549_RS03485	PF00668	Condensation domain
AL549_RS03490	PF00593	TonB dependent receptor
AL549_RS03490	PF07715	TonB-dependent Receptor Plug Domain
AL549_RS03495	PF01497	Periplasmic binding protein
AL549_RS03500	PF00550	Phosphopantetheine attachment site
AL549_RS03505	PF00501	AMP-binding enzyme
AL549_RS03505	PF13193	AMP-binding enzyme C-terminal domain
AL549_RS03510	PF01817	Chorismate mutase type II
AL549_RS03515	PF00550	Phosphopantetheine attachment site
AL549_RS03515	PF00857	Isochorismatase family
AL549_RS03520	PF04954	Siderophore-interacting protein
AL549_RS03520	PF08021	Siderophore-interacting FAD-binding domain
AL549_RS03525	PF00501	AMP-binding enzyme
AL549_RS03525	PF13193	AMP-binding enzyme C-terminal domain
AL549_RS03530	PF00425	chorismate binding enzyme
AL549_RS03535	PF13561	Enoyl-(Acyl carrier protein) reductase
AL549_RS03540	PF00793	DAHP synthetase I family
AL549_RS03545	PF00501	AMP-binding enzyme
AL549_RS03545	PF00668	Condensation domain
AL549_RS03545	PF08415	AL549_RS03545
AL549_RS03550	PF00550	Phosphopantetheine attachment site
AL549_RS03550	PF00668	Condensation domain
AL549_RS03555	PF01648	4'-phosphopantetheinyl transferase superfamily
AL549_RS03560	PF04320	AL549_RS03560
AL549_RS03565	PF05787	Bacterial protein of unknown function (DUF839)
AL549_RS03570	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS03575	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS03575	PF00672	HAMP domain
AL549_RS03580	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS03585	PF13472	GDSL-like Lipase/Acylhydrolase family
AL549_RS03590	PF00563	EAL domain
AL549_RS03595	PF14600	Cellulose-binding domain
AL549_RS03600	PF01243	Pyridoxamine 5'-phosphate oxidase
AL549_RS03605	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS03610	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS03615	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS03620	PF00005	ABC transporter
AL549_RS03625	PF04170	NlpE N-terminal domain
AL549_RS03630	PF10517	AL549_RS03630
AL549_RS03635	PF00924	Mechanosensitive ion channel
AL549_RS03640	PF00563	EAL domain
AL549_RS03640	PF02378	Phosphotransferase system, EIIC
AL549_RS03645	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
AL549_RS03650	PF00753	Metallo-beta-lactamase superfamily
AL549_RS03670	PF13505	Outer membrane protein beta-barrel domain
AL549_RS03675	PF07819	PGAP1-like protein
AL549_RS03680	PF01553	Acyltransferase
AL549_RS03680	PF07690	Major Facilitator Superfamily
AL549_RS03685	PF08487	AL549_RS03685
AL549_RS03685	PF13768	von Willebrand factor type A domain
AL549_RS03690	PF13443	Cro/C1-type HTH DNA-binding domain
AL549_RS03695	PF01565	FAD binding domain
AL549_RS03695	PF02754	AL549_RS03695
AL549_RS03695	PF02913	FAD linked oxidases, C-terminal domain
AL549_RS03695	PF13183	4Fe-4S dicluster domain
AL549_RS03700	PF02589	Uncharacterised ACR, YkgG family COG1556
AL549_RS03705	PF02589	Uncharacterised ACR, YkgG family COG1556
AL549_RS03705	PF11870	AL549_RS03705
AL549_RS03705	PF13183	4Fe-4S dicluster domain
AL549_RS03710	PF02754	AL549_RS03710
AL549_RS03715	PF02652	AL549_RS03715
AL549_RS03720	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS03720	PF03466	LysR substrate binding domain
AL549_RS03725	PF00326	Prolyl oligopeptidase family
AL549_RS03725	PF02897	Prolyl oligopeptidase, N-terminal beta-propeller domain
AL549_RS03730	PF00005	ABC transporter
AL549_RS03730	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
AL549_RS03745	PF07969	Amidohydrolase family
AL549_RS03750	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
AL549_RS03755	PF06445	GyrI-like small molecule binding domain
AL549_RS03755	PF12833	Helix-turn-helix domain
AL549_RS03760	PF01769	Divalent cation transporter
AL549_RS03760	PF03448	MgtE intracellular N domain
AL549_RS03765	PF13533	Biotin-lipoyl like
AL549_RS03765	PF16576	AL549_RS03765
AL549_RS03775	PF12625	AL549_RS03775
AL549_RS03775	PF12833	Helix-turn-helix domain
AL549_RS03785	PF00072	Response regulator receiver domain
AL549_RS03785	PF00486	Transcriptional regulatory protein, C terminal
AL549_RS03790	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS03790	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS03795	PF12900	Pyridoxamine 5'-phosphate oxidase
AL549_RS03800	PF00155	Aminotransferase class I and II
AL549_RS03800	PF00392	Bacterial regulatory proteins, gntR family
AL549_RS03805	PF13230	Glutamine amidotransferases class-II
AL549_RS03810	PF13520	Amino acid permease
AL549_RS03820	PF01037	AsnC family
AL549_RS03820	PF13404	AsnC-type helix-turn-helix domain
AL549_RS03825	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS03825	PF03466	LysR substrate binding domain
AL549_RS03830	PF01810	AL549_RS03830
AL549_RS03835	PF08534	Redoxin
AL549_RS03840	PF00709	Adenylosuccinate synthetase
AL549_RS03845	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS03845	PF03466	LysR substrate binding domain
AL549_RS03855	PF00044	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL549_RS03855	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
AL549_RS03870	PF00072	Response regulator receiver domain
AL549_RS03870	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS03870	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS03875	PF01554	MatE
AL549_RS03880	PF04363	AL549_RS03880
AL549_RS03890	PF04337	Protein of unknown function, DUF480
AL549_RS03895	PF01541	GIY-YIG catalytic domain
AL549_RS03900	PF13729	AL549_RS03900
AL549_RS03905	PF13407	Periplasmic binding protein domain
AL549_RS03910	PF00072	Response regulator receiver domain
AL549_RS03910	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS03910	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS03910	PF09308	LuxQ, periplasmic
AL549_RS03915	PF07238	PilZ domain
AL549_RS03915	PF12945	Flagellar protein YcgR
AL549_RS03920	PF00892	EamA-like transporter family
AL549_RS03925	PF01037	AsnC family
AL549_RS03925	PF13412	Winged helix-turn-helix DNA-binding
AL549_RS03950	PF02355	Protein export membrane protein
AL549_RS03950	PF07549	SecD/SecF GG Motif
AL549_RS03950	PF13721	SecD export protein N-terminal TM region
AL549_RS03955	PF02355	Protein export membrane protein
AL549_RS03955	PF07549	SecD/SecF GG Motif
AL549_RS03960	PF13561	Enoyl-(Acyl carrier protein) reductase
AL549_RS03965	PF00108	Thiolase, N-terminal domain
AL549_RS03965	PF02803	Thiolase, C-terminal domain
AL549_RS03970	PF09361	AL549_RS03970
AL549_RS03975	PF07167	AL549_RS03975
AL549_RS03980	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL549_RS03980	PF12793	AL549_RS03980
AL549_RS03985	PF01979	Amidohydrolase family
AL549_RS03990	PF00480	ROK family
AL549_RS03995	PF04131	Putative N-acetylmannosamine-6-phosphate epimerase
AL549_RS04000	PF03480	Bacterial extracellular solute-binding protein, family 7
AL549_RS04005	PF04290	AL549_RS04005
AL549_RS04010	PF06808	AL549_RS04010
AL549_RS04015	PF00701	Dihydrodipicolinate synthetase family
AL549_RS04020	PF01380	SIS domain
AL549_RS04020	PF01418	Helix-turn-helix domain, rpiR family
AL549_RS04025	PF01344	Kelch motif
AL549_RS04035	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL549_RS04040	PF03892	Nitrate reductase cytochrome c-type subunit (NapB)
AL549_RS04045	PF00384	Molybdopterin oxidoreductase
AL549_RS04045	PF01568	Molydopterin dinucleotide binding domain
AL549_RS04045	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL549_RS04050	PF03927	NapD protein
AL549_RS04055	PF00672	HAMP domain
AL549_RS04055	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS04055	PF07730	Histidine kinase
AL549_RS04055	PF13675	Type IV pili methyl-accepting chemotaxis transducer N-term
AL549_RS04060	PF00072	Response regulator receiver domain
AL549_RS04060	PF00196	Bacterial regulatory proteins, luxR family
AL549_RS04070	PF00072	Response regulator receiver domain
AL549_RS04075	PF00989	PAS fold
AL549_RS04080	PF01256	Carbohydrate kinase
AL549_RS04080	PF03853	YjeF-related protein N-terminus
AL549_RS04085	PF13505	Outer membrane protein beta-barrel domain
AL549_RS04090	PF00478	IMP dehydrogenase / GMP reductase domain
AL549_RS04095	PF13280	AL549_RS04095
AL549_RS04105	PF05099	Tellurite resistance protein TerB
AL549_RS04120	PF00520	Ion transport protein
AL549_RS04135	PF00588	SpoU rRNA Methylase family
AL549_RS04140	PF01272	Transcription elongation factor, GreA/GreB, C-term
AL549_RS04140	PF14760	Rnk N-terminus
AL549_RS04145	PF00583	Acetyltransferase (GNAT) family
AL549_RS04155	PF03372	Endonuclease/Exonuclease/phosphatase family
AL549_RS04160	PF13302	Acetyltransferase (GNAT) domain
AL549_RS04170	PF00132	Bacterial transferase hexapeptide (six repeats)
AL549_RS04175	PF12614	AL549_RS04175
AL549_RS04180	PF00270	DEAD/DEAH box helicase
AL549_RS04180	PF00271	Helicase conserved C-terminal domain
AL549_RS04185	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL549_RS04190	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
AL549_RS04195	PF01047	MarR family
AL549_RS04200	PF01545	Cation efflux family
AL549_RS04210	PF12706	Beta-lactamase superfamily domain
AL549_RS04215	PF00440	Bacterial regulatory proteins, tetR family
AL549_RS04215	PF14246	AefR-like transcriptional repressor, C-terminal region
AL549_RS04220	PF01408	Oxidoreductase family, NAD-binding Rossmann fold
AL549_RS04225	PF12698	ABC-2 family transporter protein
AL549_RS04230	PF00005	ABC transporter
AL549_RS04235	PF13437	HlyD family secretion protein
AL549_RS04235	PF13533	Biotin-lipoyl like
AL549_RS04240	PF01380	SIS domain
AL549_RS04240	PF01418	Helix-turn-helix domain, rpiR family
AL549_RS04245	PF01168	Alanine racemase, N-terminal domain
AL549_RS04245	PF14031	Putative serine dehydratase domain
AL549_RS04250	PF07969	Amidohydrolase family
AL549_RS04255	PF01042	Endoribonuclease L-PSP
AL549_RS04260	PF00474	Sodium:solute symporter family
AL549_RS04265	PF00728	Glycosyl hydrolase family 20, catalytic domain
AL549_RS04265	PF02838	Glycosyl hydrolase family 20, domain 2
AL549_RS04270	PF10282	Lactonase, 7-bladed beta-propeller
AL549_RS04275	PF01042	Endoribonuclease L-PSP
AL549_RS04280	PF00563	EAL domain
AL549_RS04280	PF00990	GGDEF domain
AL549_RS04285	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS04285	PF03466	LysR substrate binding domain
AL549_RS04290	PF07690	Major Facilitator Superfamily
AL549_RS04300	PF00462	Glutaredoxin
AL549_RS04305	PF00892	EamA-like transporter family
AL549_RS04310	PF00563	EAL domain
AL549_RS04310	PF00990	GGDEF domain
AL549_RS04315	PF13609	Gram-negative porin
AL549_RS04320	PF00578	AhpC/TSA family
AL549_RS04330	PF02566	OsmC-like protein
AL549_RS04335	PF01047	MarR family
AL549_RS04340	PF01557	Fumarylacetoacetate (FAA) hydrolase family
AL549_RS04345	PF05437	AL549_RS04345
AL549_RS04350	PF03591	AL549_RS04350
AL549_RS04355	PF02311	AraC-like ligand binding domain
AL549_RS04355	PF12833	Helix-turn-helix domain
AL549_RS04360	PF01810	AL549_RS04360
AL549_RS04365	PF13673	Acetyltransferase (GNAT) domain
AL549_RS04370	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
AL549_RS04370	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL549_RS04370	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
AL549_RS04370	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
AL549_RS04375	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
AL549_RS04375	PF02790	Cytochrome C oxidase subunit II, transmembrane domain
AL549_RS04375	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL549_RS04380	PF00115	Cytochrome C and Quinol oxidase polypeptide I
AL549_RS04385	PF04442	Cytochrome c oxidase assembly protein CtaG/Cox11
AL549_RS04390	PF00510	Cytochrome c oxidase subunit III
AL549_RS04395	PF11137	AL549_RS04395
AL549_RS04400	PF02104	AL549_RS04400
AL549_RS04410	PF02628	AL549_RS04410
AL549_RS04415	PF01040	UbiA prenyltransferase family
AL549_RS04420	PF00691	OmpA family
AL549_RS04420	PF01389	OmpA-like transmembrane domain
AL549_RS04425	PF00793	DAHP synthetase I family
AL549_RS04430	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS04430	PF08447	PAS fold
AL549_RS04435	PF00563	EAL domain
AL549_RS04435	PF00672	HAMP domain
AL549_RS04435	PF00990	GGDEF domain
AL549_RS04435	PF14827	Sensory domain of two-component sensor kinase
AL549_RS04445	PF00456	Transketolase, thiamine diphosphate binding domain
AL549_RS04445	PF02779	Transketolase, pyrimidine binding domain
AL549_RS04445	PF02780	Transketolase, C-terminal domain
AL549_RS04450	PF00923	Transaldolase
AL549_RS04455	PF04198	Putative sugar-binding domain
AL549_RS04460	PF00704	Glycosyl hydrolases family 18
AL549_RS04465	PF00563	EAL domain
AL549_RS04465	PF00990	GGDEF domain
AL549_RS04470	PF00581	Rhodanese-like domain
AL549_RS04475	PF00899	ThiF family
AL549_RS04480	PF00994	Probable molybdopterin binding domain
AL549_RS04480	PF03453	MoeA N-terminal region (domain I and II)
AL549_RS04480	PF03454	MoeA C-terminal region (domain IV)
AL549_RS04485	PF01227	GTP cyclohydrolase I
AL549_RS04490	PF01566	AL549_RS04490
AL549_RS04495	PF03595	Voltage-dependent anion channel
AL549_RS04500	PF00654	Voltage gated chloride channel
AL549_RS04520	PF00248	Aldo/keto reductase family
AL549_RS04530	PF01546	Peptidase family M20/M25/M40
AL549_RS04530	PF07687	Peptidase dimerisation domain
AL549_RS04535	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
AL549_RS04540	PF16576	AL549_RS04540
AL549_RS04545	PF00873	AcrB/AcrD/AcrF family
AL549_RS04550	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS04550	PF00672	HAMP domain
AL549_RS04555	PF13419	Haloacid dehalogenase-like hydrolase
AL549_RS04560	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
AL549_RS04560	PF01346	Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
AL549_RS04565	PF13462	Thioredoxin
AL549_RS04570	PF00691	OmpA family
AL549_RS04575	PF13417	Glutathione S-transferase, N-terminal domain
AL549_RS04585	PF07152	YaeQ protein
AL549_RS04590	PF00313	'Cold-shock' DNA-binding domain
AL549_RS04595	PF03889	AL549_RS04595
AL549_RS04600	PF06738	AL549_RS04600
AL549_RS04600	PF12821	AL549_RS04600
AL549_RS04605	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS04605	PF00990	GGDEF domain
AL549_RS04615	PF01238	Phosphomannose isomerase type I
AL549_RS04620	PF07690	Major Facilitator Superfamily
AL549_RS04625	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS04625	PF05231	AL549_RS04625
AL549_RS04625	PF07730	Histidine kinase
AL549_RS04630	PF00072	Response regulator receiver domain
AL549_RS04630	PF00196	Bacterial regulatory proteins, luxR family
AL549_RS04635	PF07690	Major Facilitator Superfamily
AL549_RS04640	PF11216	AL549_RS04640
AL549_RS04645	PF00043	Glutathione S-transferase, C-terminal domain
AL549_RS04645	PF02798	Glutathione S-transferase, N-terminal domain
AL549_RS04650	PF00107	Zinc-binding dehydrogenase
AL549_RS04650	PF16884	AL549_RS04650
AL549_RS04655	PF00440	Bacterial regulatory proteins, tetR family
AL549_RS04660	PF01699	Sodium/calcium exchanger protein
AL549_RS04670	PF00313	'Cold-shock' DNA-binding domain
AL549_RS04675	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL549_RS04675	PF13192	Thioredoxin domain
AL549_RS04680	PF00578	AhpC/TSA family
AL549_RS04680	PF10417	C-terminal domain of 1-Cys peroxiredoxin
AL549_RS04685	PF00682	HMGL-like
AL549_RS04690	PF00378	Enoyl-CoA hydratase/isomerase family
AL549_RS04695	PF01039	Carboxyl transferase domain
AL549_RS04700	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL549_RS04700	PF02770	Acyl-CoA dehydrogenase, middle domain
AL549_RS04700	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL549_RS04705	PF13411	MerR HTH family regulatory protein
AL549_RS04710	PF00108	Thiolase, N-terminal domain
AL549_RS04710	PF02803	Thiolase, C-terminal domain
AL549_RS04715	PF00171	Aldehyde dehydrogenase family
AL549_RS04720	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
AL549_RS04720	PF02770	Acyl-CoA dehydrogenase, middle domain
AL549_RS04720	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
AL549_RS04725	PF00378	Enoyl-CoA hydratase/isomerase family
AL549_RS04730	PF16113	AL549_RS04730
AL549_RS04735	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL549_RS04735	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL549_RS04740	PF13561	Enoyl-(Acyl carrier protein) reductase
AL549_RS04750	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS04755	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS04760	PF00005	ABC transporter
AL549_RS04760	PF00664	ABC transporter transmembrane region
AL549_RS04760	PF03412	Peptidase C39 family
AL549_RS04765	PF13437	HlyD family secretion protein
AL549_RS04770	PF00005	ABC transporter
AL549_RS04770	PF00664	ABC transporter transmembrane region
AL549_RS04770	PF03412	Peptidase C39 family
AL549_RS04780	PF02794	AL549_RS04780
AL549_RS04785	PF07634	AL549_RS04785
AL549_RS04785	PF11647	C-terminal region of Pasteurella multocida toxin residues 569-1285
AL549_RS04785	PF11713	Peptidase C80 family
AL549_RS04785	PF12146	Putative lysophospholipase
AL549_RS04790	PF00842	Alanine racemase, C-terminal domain
AL549_RS04790	PF01168	Alanine racemase, N-terminal domain
AL549_RS04795	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS04795	PF00672	HAMP domain
AL549_RS04795	PF12729	AL549_RS04795
AL549_RS04800	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
AL549_RS04800	PF13450	NAD(P)-binding Rossmann-like domain
AL549_RS04805	PF01012	Electron transfer flavoprotein domain
AL549_RS04810	PF00766	Electron transfer flavoprotein FAD-binding domain
AL549_RS04810	PF01012	Electron transfer flavoprotein domain
AL549_RS04815	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
AL549_RS04815	PF00364	Biotin-requiring enzyme
AL549_RS04815	PF02817	e3 binding domain
AL549_RS04820	PF02779	Transketolase, pyrimidine binding domain
AL549_RS04820	PF02780	Transketolase, C-terminal domain
AL549_RS04825	PF00676	Dehydrogenase E1 component
AL549_RS04830	PF00962	Adenosine/AMP deaminase
AL549_RS04835	PF08883	Dopa 4,5-dioxygenase family
AL549_RS04840	PF00072	Response regulator receiver domain
AL549_RS04840	PF01966	HD domain
AL549_RS04840	PF11849	AL549_RS04840
AL549_RS04845	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS04845	PF17149	AL549_RS04845
AL549_RS04865	PF01545	Cation efflux family
AL549_RS04870	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS04870	PF03466	LysR substrate binding domain
AL549_RS04875	PF08242	Methyltransferase domain
AL549_RS04880	PF00501	AMP-binding enzyme
AL549_RS04885	PF00351	Biopterin-dependent aromatic amino acid hydroxylase
AL549_RS04890	PF01329	Pterin 4 alpha carbinolamine dehydratase
AL549_RS04895	PF00563	EAL domain
AL549_RS04895	PF00990	GGDEF domain
AL549_RS04900	PF08888	HopJ type III effector protein
AL549_RS04905	PF06945	AL549_RS04905
AL549_RS04905	PF14375	AL549_RS04905
AL549_RS04910	PF12843	AL549_RS04910
AL549_RS04915	PF03479	Domain of unknown function (DUF296)
AL549_RS04920	PF00440	Bacterial regulatory proteins, tetR family
AL549_RS04925	PF00043	Glutathione S-transferase, C-terminal domain
AL549_RS04925	PF13417	Glutathione S-transferase, N-terminal domain
AL549_RS04930	PF00069	Protein kinase domain
AL549_RS04935	PF00498	FHA domain
AL549_RS04940	PF12790	Type VI secretion lipoprotein
AL549_RS04945	PF05936	AL549_RS04945
AL549_RS04950	PF00691	OmpA family
AL549_RS04950	PF09850	Uncharacterized protein conserved in bacteria (DUF2077)
AL549_RS04955	PF06744	AL549_RS04955
AL549_RS04955	PF06761	AL549_RS04955
AL549_RS04955	PF14331	AL549_RS04955
AL549_RS04960	PF09867	Uncharacterized protein conserved in bacteria (DUF2094)
AL549_RS04965	PF13672	Protein phosphatase 2C
AL549_RS04970	PF06812	AL549_RS04970
AL549_RS04975	PF05591	AL549_RS04975
AL549_RS04980	PF05943	AL549_RS04980
AL549_RS04985	PF05943	AL549_RS04985
AL549_RS04990	PF07024	ImpE protein
AL549_RS04995	PF04965	Gene 25-like lysozyme
AL549_RS05000	PF05947	AL549_RS05000
AL549_RS05005	PF06996	AL549_RS05005
AL549_RS05010	PF00004	ATPase family associated with various cellular activities (AAA)
AL549_RS05010	PF07724	AAA domain (Cdc48 subfamily)
AL549_RS05010	PF10431	C-terminal, D2-small domain, of ClpB protein
AL549_RS05015	PF05638	Protein of unknown function (DUF796)
AL549_RS05020	PF05954	Phage late control gene D protein (GPD)
AL549_RS05025	PF05488	PAAR motif
AL549_RS05035	PF03527	AL549_RS05035
AL549_RS05035	PF05593	AL549_RS05035
AL549_RS05060	PF15575	AL549_RS05060
AL549_RS05075	PF08887	AL549_RS05075
AL549_RS05075	PF08906	AL549_RS05075
AL549_RS05090	PF03372	Endonuclease/Exonuclease/phosphatase family
AL549_RS05095	PF01435	Peptidase family M48
AL549_RS05100	PF04011	LemA family
AL549_RS05105	PF03606	AL549_RS05105
AL549_RS05110	PF13633	Prokaryotic N-terminal methylation site
AL549_RS05115	PF01523	Putative modulator of DNA gyrase
AL549_RS05120	PF01523	Putative modulator of DNA gyrase
AL549_RS05125	PF03009	Glycerophosphoryl diester phosphodiesterase family
AL549_RS05130	PF07690	Major Facilitator Superfamily
AL549_RS05135	PF00652	Ricin-type beta-trefoil lectin domain
AL549_RS05135	PF07968	Leukocidin/Hemolysin toxin family
AL549_RS05145	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS05145	PF00672	HAMP domain
AL549_RS05145	PF02743	Cache domain
AL549_RS05150	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS05150	PF00672	HAMP domain
AL549_RS05150	PF02743	Cache domain
AL549_RS05155	PF00128	Alpha amylase, catalytic domain
AL549_RS05160	PF00583	Acetyltransferase (GNAT) family
AL549_RS05165	PF00384	Molybdopterin oxidoreductase
AL549_RS05165	PF01568	Molydopterin dinucleotide binding domain
AL549_RS05165	PF04324	BFD-like [2Fe-2S] binding domain
AL549_RS05165	PF04879	Molybdopterin oxidoreductase Fe4S4 domain
AL549_RS05170	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL549_RS05175	PF02885	Glycosyl transferase family, helical bundle domain
AL549_RS05180	PF01738	Dienelactone hydrolase family
AL549_RS05185	PF03861	ANTAR domain
AL549_RS05190	PF13379	NMT1-like family
AL549_RS05195	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS05200	PF00005	ABC transporter
AL549_RS05205	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL549_RS05205	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL549_RS05205	PF04324	BFD-like [2Fe-2S] binding domain
AL549_RS05205	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL549_RS05210	PF13806	Rieske-like [2Fe-2S] domain
AL549_RS05215	PF02412	Thrombospondin type 3 repeat
AL549_RS05220	PF00990	GGDEF domain
AL549_RS05220	PF13181	Tetratricopeptide repeat
AL549_RS05220	PF13424	Tetratricopeptide repeat
AL549_RS05225	PF12847	Methyltransferase domain
AL549_RS05230	PF02492	CobW/HypB/UreG, nucleotide-binding domain
AL549_RS05240	PF00270	DEAD/DEAH box helicase
AL549_RS05240	PF00271	Helicase conserved C-terminal domain
AL549_RS05245	PF00491	Arginase family
AL549_RS05250	PF01614	Bacterial transcriptional regulator
AL549_RS05250	PF09339	IclR helix-turn-helix domain
AL549_RS05255	PF00072	Response regulator receiver domain
AL549_RS05255	PF00990	GGDEF domain
AL549_RS05260	PF01339	CheB methylesterase
AL549_RS05265	PF01739	CheR methyltransferase, SAM binding domain
AL549_RS05265	PF03705	CheR methyltransferase, all-alpha domain
AL549_RS05270	PF00072	Response regulator receiver domain
AL549_RS05270	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS05270	PF00672	HAMP domain
AL549_RS05270	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS05270	PF02743	Cache domain
AL549_RS05270	PF13185	GAF domain
AL549_RS05275	PF01575	MaoC like domain
AL549_RS05295	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS05295	PF08447	PAS fold
AL549_RS05300	PF01077	Nitrite and sulphite reductase 4Fe-4S domain
AL549_RS05300	PF03460	Nitrite/Sulfite reductase ferredoxin-like half domain
AL549_RS05300	PF04324	BFD-like [2Fe-2S] binding domain
AL549_RS05300	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL549_RS05305	PF13806	Rieske-like [2Fe-2S] domain
AL549_RS05310	PF01226	Formate/nitrite transporter
AL549_RS05315	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL549_RS05320	PF13778	AL549_RS05320
AL549_RS05325	PF01936	NYN domain
AL549_RS05330	PF11932	AL549_RS05330
AL549_RS05335	PF01618	AL549_RS05335
AL549_RS05340	PF01618	AL549_RS05340
AL549_RS05345	PF02472	Biopolymer transport protein ExbD/TolR
AL549_RS05350	PF03544	Gram-negative bacterial TonB protein C-terminal
AL549_RS05355	PF13432	Tetratricopeptide repeat
AL549_RS05360	PF03605	AL549_RS05360
AL549_RS05365	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS05365	PF00672	HAMP domain
AL549_RS05365	PF17200	AL549_RS05365
AL549_RS05370	PF11661	AL549_RS05370
AL549_RS05375	PF11756	AL549_RS05375
AL549_RS05380	PF01554	MatE
AL549_RS05385	PF12833	Helix-turn-helix domain
AL549_RS05390	PF07690	Major Facilitator Superfamily
AL549_RS05395	PF00085	Thioredoxin
AL549_RS05400	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
AL549_RS05400	PF08545	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
AL549_RS05405	PF07394	AL549_RS05405
AL549_RS05410	PF08811	AL549_RS05410
AL549_RS05415	PF00581	Rhodanese-like domain
AL549_RS05415	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL549_RS05415	PF07992	Pyridine nucleotide-disulphide oxidoreductase
AL549_RS05420	PF11127	Protein of unknown function (DUF2892)
AL549_RS05425	PF01022	Bacterial regulatory protein, arsR family
AL549_RS05430	PF04143	AL549_RS05430
AL549_RS05435	PF04143	AL549_RS05435
AL549_RS05440	PF16576	AL549_RS05440
AL549_RS05445	PF00873	AcrB/AcrD/AcrF family
AL549_RS05450	PF03372	Endonuclease/Exonuclease/phosphatase family
AL549_RS05455	PF03477	ATP cone domain
AL549_RS05455	PF13597	Anaerobic ribonucleoside-triphosphate reductase
AL549_RS05460	PF13353	4Fe-4S single cluster domain
AL549_RS05465	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS05465	PF00672	HAMP domain
AL549_RS05465	PF02743	Cache domain
AL549_RS05470	PF00155	Aminotransferase class I and II
AL549_RS05475	PF05618	Putative ATP-dependant zinc protease
AL549_RS05480	PF01609	Transposase DDE domain
AL549_RS05480	PF13006	AL549_RS05480
AL549_RS05490	PF04076	Bacterial OB fold (BOF) protein
AL549_RS05495	PF01656	CobQ/CobB/MinD/ParA nucleotide binding domain
AL549_RS05495	PF07685	CobB/CobQ-like glutamine amidotransferase domain
AL549_RS05500	PF13531	Bacterial extracellular solute-binding protein
AL549_RS05505	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS05510	PF00005	ABC transporter
AL549_RS05510	PF03459	TOBE domain
AL549_RS05515	PF00892	EamA-like transporter family
AL549_RS05520	PF01047	MarR family
AL549_RS05525	PF11269	Protein of unknown function (DUF3069)
AL549_RS05530	PF00072	Response regulator receiver domain
AL549_RS05530	PF00990	GGDEF domain
AL549_RS05535	PF11557	AL549_RS05535
AL549_RS05540	PF00990	GGDEF domain
AL549_RS05545	PF10719	AL549_RS05545
AL549_RS05550	PF10115	AL549_RS05550
AL549_RS05555	PF01262	Alanine dehydrogenase/PNT, C-terminal domain
AL549_RS05555	PF05222	Alanine dehydrogenase/PNT, N-terminal domain
AL549_RS05555	PF12769	Domain of unknown function (DUF3814)
AL549_RS05560	PF02233	NAD(P) transhydrogenase beta subunit
AL549_RS05565	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS05565	PF11884	Domain of unknown function (DUF3404)
AL549_RS05570	PF00072	Response regulator receiver domain
AL549_RS05570	PF00486	Transcriptional regulatory protein, C terminal
AL549_RS05575	PF11060	AL549_RS05575
AL549_RS05580	PF13729	AL549_RS05580
AL549_RS05585	PF13551	Winged helix-turn helix
AL549_RS05590	PF01253	Translation initiation factor SUI1
AL549_RS05595	PF11782	AL549_RS05595
AL549_RS05600	PF01820	D-ala D-ala ligase N-terminus
AL549_RS05600	PF07478	D-ala D-ala ligase C-terminus
AL549_RS05605	PF05036	Sporulation related domain
AL549_RS05610	PF00583	Acetyltransferase (GNAT) family
AL549_RS05610	PF13380	CoA binding domain
AL549_RS05610	PF13549	ATP-grasp domain
AL549_RS05610	PF13607	Succinyl-CoA ligase like flavodoxin domain
AL549_RS05615	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS05615	PF03466	LysR substrate binding domain
AL549_RS05620	PF00593	TonB dependent receptor
AL549_RS05620	PF07715	TonB-dependent Receptor Plug Domain
AL549_RS05625	PF00672	HAMP domain
AL549_RS05625	PF00989	PAS fold
AL549_RS05625	PF00990	GGDEF domain
AL549_RS05625	PF13426	PAS domain
AL549_RS05625	PF17152	AL549_RS05625
AL549_RS05630	PF13689	AL549_RS05630
AL549_RS05635	PF03746	LamB/YcsF family
AL549_RS05640	PF02682	Allophanate hydrolase subunit 1
AL549_RS05645	PF02626	Allophanate hydrolase subunit 2
AL549_RS05650	PF01266	FAD dependent oxidoreductase
AL549_RS05655	PF02687	AL549_RS05655
AL549_RS05655	PF12704	MacB-like periplasmic core domain
AL549_RS05660	PF00005	ABC transporter
AL549_RS05665	PF13472	GDSL-like Lipase/Acylhydrolase family
AL549_RS05670	PF07055	Enoyl reductase FAD binding domain
AL549_RS05670	PF12241	Trans-2-enoyl-CoA reductase catalytic region
AL549_RS05670	PF12242	NAD(P)H binding domain of trans-2-enoyl-CoA reductase
AL549_RS05675	PF00563	EAL domain
AL549_RS05675	PF00990	GGDEF domain
AL549_RS05680	PF09818	Predicted ATPase of the ABC class
AL549_RS05685	PF13302	Acetyltransferase (GNAT) domain
AL549_RS05690	PF00226	DnaJ domain
AL549_RS05690	PF12339	AL549_RS05690
AL549_RS05695	PF03171	2OG-Fe(II) oxygenase superfamily
AL549_RS05695	PF14226	non-haem dioxygenase in morphine synthesis N-terminal
AL549_RS05700	PF09997	AL549_RS05700
AL549_RS05705	PF03091	CutA1 divalent ion tolerance protein
AL549_RS05710	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS05710	PF03466	LysR substrate binding domain
AL549_RS05715	PF00128	Alpha amylase, catalytic domain
AL549_RS05715	PF16657	AL549_RS05715
AL549_RS05725	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL549_RS05725	PF12793	AL549_RS05725
AL549_RS05730	PF11869	AL549_RS05730
AL549_RS05735	PF03061	Thioesterase superfamily
AL549_RS05740	PF01435	Peptidase family M48
AL549_RS05745	PF11667	AL549_RS05745
AL549_RS05750	PF03349	Outer membrane protein transport protein (OMPP1/FadL/TodX)
AL549_RS05755	PF12262	AL549_RS05755
AL549_RS05760	PF03831	PhnA protein
AL549_RS05760	PF08274	PhnA Zinc-Ribbon
AL549_RS05765	PF12680	SnoaL-like domain
AL549_RS05770	PF00491	Arginase family
AL549_RS05775	PF00892	EamA-like transporter family
AL549_RS05785	PF03741	AL549_RS05785
AL549_RS05790	PF00149	Calcineurin-like phosphoesterase
AL549_RS05790	PF02872	5'-nucleotidase, C-terminal domain
AL549_RS05795	PF11398	Protein of unknown function (DUF2813)
AL549_RS05800	PF06496	AL549_RS05800
AL549_RS05805	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS05805	PF03466	LysR substrate binding domain
AL549_RS05810	PF00571	CBS domain
AL549_RS05810	PF01226	Formate/nitrite transporter
AL549_RS05815	PF04264	YceI-like domain
AL549_RS05820	PF01292	Prokaryotic cytochrome b561
AL549_RS05830	PF00563	EAL domain
AL549_RS05835	PF00270	DEAD/DEAH box helicase
AL549_RS05835	PF00271	Helicase conserved C-terminal domain
AL549_RS05840	PF04336	AL549_RS05840
AL549_RS05845	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS05850	PF13419	Haloacid dehalogenase-like hydrolase
AL549_RS05855	PF13487	HD domain
AL549_RS05865	PF05981	AL549_RS05865
AL549_RS05870	PF00294	pfkB family carbohydrate kinase
AL549_RS05875	PF01268	Formate--tetrahydrofolate ligase
AL549_RS05880	PF00483	Nucleotidyl transferase
AL549_RS05885	PF00704	Glycosyl hydrolases family 18
AL549_RS05885	PF02839	Carbohydrate binding domain
AL549_RS05885	PF06483	AL549_RS05885
AL549_RS05890	PF06719	AL549_RS05890
AL549_RS05890	PF12833	Helix-turn-helix domain
AL549_RS05895	PF00465	Iron-containing alcohol dehydrogenase
AL549_RS05900	PF00072	Response regulator receiver domain
AL549_RS05900	PF02954	Bacterial regulatory protein, Fis family
AL549_RS05900	PF14532	Sigma-54 interaction domain
AL549_RS05905	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS05905	PF00672	HAMP domain
AL549_RS05905	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS05910	PF13343	Bacterial extracellular solute-binding protein
AL549_RS05915	PF07690	Major Facilitator Superfamily
AL549_RS05920	PF00224	Pyruvate kinase, barrel domain
AL549_RS05920	PF02887	Pyruvate kinase, alpha/beta domain
AL549_RS05925	PF00563	EAL domain
AL549_RS05930	PF13275	S4 domain
AL549_RS05935	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS05940	PF03372	Endonuclease/Exonuclease/phosphatase family
AL549_RS05945	PF00356	Bacterial regulatory proteins, lacI family
AL549_RS05945	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL549_RS05950	PF00359	Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
AL549_RS05950	PF00381	PTS HPr component phosphorylation site
AL549_RS05955	PF00294	pfkB family carbohydrate kinase
AL549_RS05960	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL549_RS05960	PF02378	Phosphotransferase system, EIIC
AL549_RS05965	PF13505	Outer membrane protein beta-barrel domain
AL549_RS05970	PF00873	AcrB/AcrD/AcrF family
AL549_RS05975	PF13437	HlyD family secretion protein
AL549_RS05975	PF13533	Biotin-lipoyl like
AL549_RS05980	PF16576	AL549_RS05980
AL549_RS05985	PF00440	Bacterial regulatory proteins, tetR family
AL549_RS05990	PF00089	Trypsin
AL549_RS05995	PF01571	Aminomethyltransferase folate-binding domain
AL549_RS05995	PF08669	Glycine cleavage T-protein C-terminal barrel domain
AL549_RS06000	PF01381	Helix-turn-helix
AL549_RS06000	PF07883	Cupin domain
AL549_RS06005	PF00464	Serine hydroxymethyltransferase
AL549_RS06010	PF01597	Glycine cleavage H-protein
AL549_RS06015	PF02347	Glycine cleavage system P-protein
AL549_RS06025	PF08843	Nucleotidyl transferase of unknown function (DUF1814)
AL549_RS06035	PF00005	ABC transporter
AL549_RS06035	PF00664	ABC transporter transmembrane region
AL549_RS06040	PF01909	Nucleotidyltransferase domain
AL549_RS06045	PF00795	Carbon-nitrogen hydrolase
AL549_RS06055	PF16691	AL549_RS06055
AL549_RS06060	PF02661	Fic/DOC family
AL549_RS06060	PF13776	AL549_RS06060
AL549_RS06070	PF13437	HlyD family secretion protein
AL549_RS06070	PF13533	Biotin-lipoyl like
AL549_RS06075	PF07690	Major Facilitator Superfamily
AL549_RS06090	PF07690	Major Facilitator Superfamily
AL549_RS06095	PF08774	VRR-NUC domain
AL549_RS06100	PF13432	Tetratricopeptide repeat
AL549_RS06105	PF04055	Radical SAM superfamily
AL549_RS06105	PF13186	Iron-sulfur cluster-binding domain
AL549_RS06110	PF03781	Sulfatase-modifying factor enzyme 1
AL549_RS06115	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
AL549_RS06120	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS06120	PF03466	LysR substrate binding domain
AL549_RS06125	PF13584	AL549_RS06125
AL549_RS06130	PF13519	von Willebrand factor type A domain
AL549_RS06135	PF00092	von Willebrand factor type A domain
AL549_RS06140	PF14316	AL549_RS06140
AL549_RS06145	PF01882	AL549_RS06145
AL549_RS06150	PF07726	ATPase family associated with various cellular activities (AAA)
AL549_RS06155	PF04055	Radical SAM superfamily
AL549_RS06155	PF13186	Iron-sulfur cluster-binding domain
AL549_RS06155	PF13353	4Fe-4S single cluster domain
AL549_RS06160	PF00884	Sulfatase
AL549_RS06160	PF14707	C-terminal region of aryl-sulfatase
AL549_RS06165	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS06165	PF03466	LysR substrate binding domain
AL549_RS06170	PF00884	Sulfatase
AL549_RS06175	PF00871	Acetokinase family
AL549_RS06180	PF00270	DEAD/DEAH box helicase
AL549_RS06180	PF00271	Helicase conserved C-terminal domain
AL549_RS06180	PF03880	DbpA RNA binding domain
AL549_RS06185	PF00575	S1 RNA binding domain
AL549_RS06185	PF00773	RNB domain
AL549_RS06185	PF08206	Ribonuclease B OB domain
AL549_RS06190	PF12833	Helix-turn-helix domain
AL549_RS06195	PF11225	AL549_RS06195
AL549_RS06200	PF12849	PBP superfamily domain
AL549_RS06210	PF00563	EAL domain
AL549_RS06210	PF00990	GGDEF domain
AL549_RS06210	PF01590	GAF domain
AL549_RS06220	PF00072	Response regulator receiver domain
AL549_RS06225	PF00072	Response regulator receiver domain
AL549_RS06225	PF00196	Bacterial regulatory proteins, luxR family
AL549_RS06225	PF00563	EAL domain
AL549_RS06230	PF00072	Response regulator receiver domain
AL549_RS06230	PF00497	Bacterial extracellular solute-binding proteins, family 3
AL549_RS06230	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS06230	PF01627	Hpt domain
AL549_RS06230	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS06235	PF00270	DEAD/DEAH box helicase
AL549_RS06235	PF00271	Helicase conserved C-terminal domain
AL549_RS06235	PF03880	DbpA RNA binding domain
AL549_RS06240	PF11854	AL549_RS06240
AL549_RS06245	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)
AL549_RS06255	PF13442	Cytochrome C oxidase, cbb3-type, subunit III
AL549_RS06260	PF03264	NapC/NirT cytochrome c family, N-terminal region
AL549_RS06265	PF03781	Sulfatase-modifying factor enzyme 1
AL549_RS06265	PF08308	AL549_RS06265
AL549_RS06270	PF08308	AL549_RS06270
AL549_RS06275	PF06934	AL549_RS06275
AL549_RS06285	PF00072	Response regulator receiver domain
AL549_RS06285	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS06285	PF00672	HAMP domain
AL549_RS06285	PF01627	Hpt domain
AL549_RS06285	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS06290	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL549_RS06295	PF02142	MGS-like domain
AL549_RS06300	PF00580	UvrD/REP helicase N-terminal domain
AL549_RS06300	PF12462	AL549_RS06300
AL549_RS06300	PF13361	UvrD-like helicase C-terminal domain
AL549_RS06305	PF12805	AL549_RS06305
AL549_RS06305	PF13515	AL549_RS06305
AL549_RS06320	PF00368	Hydroxymethylglutaryl-coenzyme A reductase
AL549_RS06330	PF10688	AL549_RS06330
AL549_RS06335	PF00376	MerR family regulatory protein
AL549_RS06335	PF09278	MerR, DNA binding
AL549_RS06340	PF00005	ABC transporter
AL549_RS06345	PF01032	FecCD transport family
AL549_RS06350	PF01032	FecCD transport family
AL549_RS06355	PF03819	MazG nucleotide pyrophosphohydrolase domain
AL549_RS06360	PF00293	NUDIX domain
AL549_RS06365	PF00132	Bacterial transferase hexapeptide (six repeats)
AL549_RS06365	PF12464	Maltose acetyltransferase
AL549_RS06370	PF00072	Response regulator receiver domain
AL549_RS06375	PF14501	GHKL domain
AL549_RS06375	PF14689	Sensor_kinase_SpoOB-type, alpha-helical domain
AL549_RS06375	PF17203	AL549_RS06375
AL549_RS06380	PF00939	Sodium:sulfate symporter transmembrane region
AL549_RS06385	PF01764	Lipase (class 3)
AL549_RS06405	PF03372	Endonuclease/Exonuclease/phosphatase family
AL549_RS06410	PF00031	Cystatin domain
AL549_RS06415	PF00691	OmpA family
AL549_RS06425	PF16964	AL549_RS06425
AL549_RS06435	PF13432	Tetratricopeptide repeat
AL549_RS06440	PF00482	Type II secretion system (T2SS), protein F
AL549_RS06445	PF00482	Type II secretion system (T2SS), protein F
AL549_RS06450	PF00437	Type II/IV secretion system protein
AL549_RS06465	PF00263	AL549_RS06465
AL549_RS06465	PF13629	AL549_RS06465
AL549_RS06475	PF04964	AL549_RS06475
AL549_RS06480	PF01478	Type IV leader peptidase family
AL549_RS06485	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS06490	PF05547	AL549_RS06490
AL549_RS06495	PF13476	AAA domain
AL549_RS06495	PF13558	Putative exonuclease SbcCD, C subunit
AL549_RS06500	PF00149	Calcineurin-like phosphoesterase
AL549_RS06500	PF12320	Type 5 capsule protein repressor C-terminal domain
AL549_RS06505	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS06505	PF08447	PAS fold
AL549_RS06510	PF01926	50S ribosome-binding GTPase
AL549_RS06515	PF00583	Acetyltransferase (GNAT) family
AL549_RS06520	PF00487	AL549_RS06520
AL549_RS06525	PF00072	Response regulator receiver domain
AL549_RS06525	PF01584	CheW-like domain
AL549_RS06530	PF00356	Bacterial regulatory proteins, lacI family
AL549_RS06530	PF13377	Periplasmic binding protein-like domain
AL549_RS06535	PF00294	pfkB family carbohydrate kinase
AL549_RS06540	PF13407	Periplasmic binding protein domain
AL549_RS06545	PF02653	AL549_RS06545
AL549_RS06550	PF00005	ABC transporter
AL549_RS06555	PF05025	RbsD / FucU transport protein family
AL549_RS06560	PF01810	AL549_RS06560
AL549_RS06565	PF06127	AL549_RS06565
AL549_RS06570	PF04237	YjbR
AL549_RS06575	PF05762	VWA domain containing CoxE-like protein
AL549_RS06580	PF07728	AAA domain (dynein-related subfamily)
AL549_RS06580	PF12592	Protein of unknown function (DUF3763)
AL549_RS06585	PF00293	NUDIX domain
AL549_RS06590	PF01212	Beta-eliminating lyase
AL549_RS06595	PF00034	Cytochrome c
AL549_RS06600	PF00171	Aldehyde dehydrogenase family
AL549_RS06605	PF03606	AL549_RS06605
AL549_RS06610	PF04952	Succinylglutamate desuccinylase / Aspartoacylase family
AL549_RS06615	PF01569	PAP2 superfamily
AL549_RS06620	PF04266	ASCH domain
AL549_RS06625	PF01852	START domain
AL549_RS06630	PF00892	EamA-like transporter family
AL549_RS06635	PF03067	Chitin binding domain
AL549_RS06640	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AL549_RS06645	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS06645	PF00672	HAMP domain
AL549_RS06645	PF02743	Cache domain
AL549_RS06650	PF01925	AL549_RS06650
AL549_RS06655	PF00149	Calcineurin-like phosphoesterase
AL549_RS06660	PF03222	Tryptophan/tyrosine permease family
AL549_RS06665	PF11964	SpoIIAA-like
AL549_RS06670	PF07238	PilZ domain
AL549_RS06680	PF01447	Thermolysin metallopeptidase, catalytic domain
AL549_RS06680	PF02868	Thermolysin metallopeptidase, alpha-helical domain
AL549_RS06685	PF02308	AL549_RS06685
AL549_RS06685	PF13194	AL549_RS06685
AL549_RS06690	PF00873	AcrB/AcrD/AcrF family
AL549_RS06695	PF16576	AL549_RS06695
AL549_RS06705	PF10604	Polyketide cyclase / dehydrase and lipid transport
AL549_RS06720	PF00581	Rhodanese-like domain
AL549_RS06725	PF00012	Hsp70 protein
AL549_RS06730	PF00465	Iron-containing alcohol dehydrogenase
AL549_RS06735	PF06961	AL549_RS06735
AL549_RS06740	PF07995	Glucose / Sorbosone dehydrogenase
AL549_RS06745	PF02016	LD-carboxypeptidase
AL549_RS06750	PF01212	Beta-eliminating lyase
AL549_RS06755	PF13419	Haloacid dehalogenase-like hydrolase
AL549_RS06760	PF02754	AL549_RS06760
AL549_RS06760	PF13183	4Fe-4S dicluster domain
AL549_RS06765	PF00890	FAD binding domain
AL549_RS06770	PF01266	FAD dependent oxidoreductase
AL549_RS06770	PF04324	BFD-like [2Fe-2S] binding domain
AL549_RS06780	PF01483	Proprotein convertase P-domain
AL549_RS06780	PF13582	Metallo-peptidase family M12B Reprolysin-like
AL549_RS06785	PF10974	AL549_RS06785
AL549_RS06790	PF03618	AL549_RS06790
AL549_RS06795	PF00391	PEP-utilising enzyme, mobile domain
AL549_RS06795	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
AL549_RS06795	PF02896	PEP-utilising enzyme, TIM barrel domain
AL549_RS06800	PF04224	AL549_RS06800
AL549_RS06805	PF00005	ABC transporter
AL549_RS06810	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS06815	PF04069	Substrate binding domain of ABC-type glycine betaine transport system
AL549_RS06825	PF00171	Aldehyde dehydrogenase family
AL549_RS06830	PF00440	Bacterial regulatory proteins, tetR family
AL549_RS06830	PF13977	Bacterial transcriptional repressor
AL549_RS06835	PF13181	Tetratricopeptide repeat
AL549_RS06840	PF01551	Peptidase family M23
AL549_RS06850	PF00768	D-alanyl-D-alanine carboxypeptidase
AL549_RS06850	PF07943	Penicillin-binding protein 5, C-terminal domain
AL549_RS06855	PF00293	NUDIX domain
AL549_RS06865	PF02698	DUF218 domain
AL549_RS06870	PF03313	AL549_RS06870
AL549_RS06870	PF03315	Serine dehydratase beta chain
AL549_RS06875	PF07690	Major Facilitator Superfamily
AL549_RS06880	PF01636	Phosphotransferase enzyme family
AL549_RS06885	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS06885	PF03466	LysR substrate binding domain
AL549_RS06890	PF01266	FAD dependent oxidoreductase
AL549_RS06895	PF00892	EamA-like transporter family
AL549_RS06900	PF00392	Bacterial regulatory proteins, gntR family
AL549_RS06900	PF07702	UTRA domain
AL549_RS06905	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS06910	PF00005	ABC transporter
AL549_RS06910	PF08402	TOBE domain
AL549_RS06920	PF13343	Bacterial extracellular solute-binding protein
AL549_RS06925	PF00266	Aminotransferase class-V
AL549_RS06930	PF00202	Aminotransferase class-III
AL549_RS06935	PF13419	Haloacid dehalogenase-like hydrolase
AL549_RS06940	PF06445	GyrI-like small molecule binding domain
AL549_RS06940	PF12833	Helix-turn-helix domain
AL549_RS06945	PF00155	Aminotransferase class I and II
AL549_RS06955	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS06965	PF12833	Helix-turn-helix domain
AL549_RS06965	PF12852	Cupin
AL549_RS06970	PF13419	Haloacid dehalogenase-like hydrolase
AL549_RS06975	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family
AL549_RS06975	PF03466	LysR substrate binding domain
AL549_RS06985	PF08279	HTH domain
AL549_RS06985	PF13280	AL549_RS06985
AL549_RS06990	PF00132	Bacterial transferase hexapeptide (six repeats)
AL549_RS06990	PF12464	Maltose acetyltransferase
AL549_RS06995	PF02566	OsmC-like protein
AL549_RS07000	PF01625	Peptide methionine sulfoxide reductase
AL549_RS07000	PF01641	SelR domain
AL549_RS07005	PF00990	GGDEF domain
AL549_RS07015	PF01381	Helix-turn-helix
AL549_RS07015	PF06114	Domain of unknown function (DUF955)
AL549_RS07015	PF12268	AL549_RS07015
AL549_RS07020	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS07020	PF00672	HAMP domain
AL549_RS07020	PF08376	Nitrate and nitrite sensing
AL549_RS07025	PF00990	GGDEF domain
AL549_RS07025	PF03924	CHASE domain
AL549_RS07030	PF13532	2OG-Fe(II) oxygenase superfamily
AL549_RS07035	PF12060	AL549_RS07035
AL549_RS07040	PF01773	Na+ dependent nucleoside transporter N-terminus
AL549_RS07040	PF07662	Na+ dependent nucleoside transporter C-terminus
AL549_RS07040	PF07670	Nucleoside recognition
AL549_RS07050	PF11140	AL549_RS07050
AL549_RS07055	PF13302	Acetyltransferase (GNAT) domain
AL549_RS07060	PF13544	AL549_RS07060
AL549_RS07065	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
AL549_RS07065	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
AL549_RS07075	PF01564	Spermine/spermidine synthase
AL549_RS07080	PF13419	Haloacid dehalogenase-like hydrolase
AL549_RS07085	PF01551	Peptidase family M23
AL549_RS07085	PF04225	Opacity-associated protein A LysM-like domain
AL549_RS07095	PF06912	AL549_RS07095
AL549_RS07100	PF07670	Nucleoside recognition
AL549_RS07105	PF04932	AL549_RS07105
AL549_RS07110	PF01757	AL549_RS07110
AL549_RS07115	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS07115	PF00672	HAMP domain
AL549_RS07115	PF02743	Cache domain
AL549_RS07120	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS07120	PF00672	HAMP domain
AL549_RS07120	PF02743	Cache domain
AL549_RS07125	PF00128	Alpha amylase, catalytic domain
AL549_RS07130	PF00582	Universal stress protein family
AL549_RS07135	PF13616	PPIC-type PPIASE domain
AL549_RS07140	PF00072	Response regulator receiver domain
AL549_RS07140	PF01584	CheW-like domain
AL549_RS07145	PF01923	Cobalamin adenosyltransferase
AL549_RS07150	PF01243	Pyridoxamine 5'-phosphate oxidase
AL549_RS07155	PF06228	Haem utilisation ChuX/HutX
AL549_RS07160	PF04055	Radical SAM superfamily
AL549_RS07165	PF03544	Gram-negative bacterial TonB protein C-terminal
AL549_RS07170	PF01618	AL549_RS07170
AL549_RS07175	PF02472	Biopolymer transport protein ExbD/TolR
AL549_RS07180	PF01497	Periplasmic binding protein
AL549_RS07185	PF01032	FecCD transport family
AL549_RS07190	PF00005	ABC transporter
AL549_RS07195	PF00440	Bacterial regulatory proteins, tetR family
AL549_RS07200	PF04175	Protein of unknown function (DUF406)
AL549_RS07205	PF07383	AL549_RS07205
AL549_RS07295	PF10082	AL549_RS07295
AL549_RS07310	PF13807	AL549_RS07310
AL549_RS07430	PF00528	Binding-protein-dependent transport system inner membrane component
AL549_RS07580	PF00194	Eukaryotic-type carbonic anhydrase
AL549_RS07690	PF00072	Response regulator receiver domain
AL549_RS07690	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS07690	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS07740	PF00753	Metallo-beta-lactamase superfamily
AL549_RS08290	PF08453	Peptidase family M9 N-terminal
AL549_RS08525	PF02836	Glycosyl hydrolases family 2, TIM barrel domain
AL549_RS08525	PF16353	AL549_RS08525
AL549_RS08550	PF00356	Bacterial regulatory proteins, lacI family
AL549_RS08550	PF00532	Periplasmic binding proteins and sugar binding domain of LacI family
AL549_RS08725	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL549_RS08910	PF02798	Glutathione S-transferase, N-terminal domain
AL549_RS09135	PF06202	Amylo-alpha-1,6-glucosidase
AL549_RS09145	PF06202	Amylo-alpha-1,6-glucosidase
AL549_RS09305	PF17200	AL549_RS09305
AL549_RS09455	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS09480	PF07228	Stage II sporulation protein E (SpoIIE)
AL549_RS09530	PF06674	AL549_RS09530
AL549_RS09545	PF01752	Collagenase
AL549_RS09550	PF01752	Collagenase
AL549_RS09550	PF08453	Peptidase family M9 N-terminal
AL549_RS09745	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
AL549_RS10230	PF01032	FecCD transport family
AL549_RS10645	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS10645	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS10780	PF00474	Sodium:solute symporter family
AL549_RS10810	PF14583	Oligogalacturonate lyase
AL549_RS10895	PF00753	Metallo-beta-lactamase superfamily
AL549_RS11085	PF00873	AcrB/AcrD/AcrF family
AL549_RS11195	PF00668	Condensation domain
AL549_RS11195	PF08415	AL549_RS11195
AL549_RS11315	PF02378	Phosphotransferase system, EIIC
AL549_RS11375	PF02589	Uncharacterised ACR, YkgG family COG1556
AL549_RS11575	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS11575	PF09308	LuxQ, periplasmic
AL549_RS11755	PF01256	Carbohydrate kinase
AL549_RS11755	PF03853	YjeF-related protein N-terminus
AL549_RS11895	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
AL549_RS11955	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS12000	PF00563	EAL domain
AL549_RS12310	PF12146	Putative lysophospholipase
AL549_RS12315	PF03543	Yersinia/Haemophilus virulence surface antigen
AL549_RS12545	PF05943	AL549_RS12545
AL549_RS12690	PF01435	Peptidase family M48
AL549_RS12715	PF01523	Putative modulator of DNA gyrase
AL549_RS12740	PF07690	Major Facilitator Superfamily
AL549_RS12815	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
AL549_RS12885	PF02412	Thrombospondin type 3 repeat
AL549_RS12995	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
AL549_RS13170	PF07394	AL549_RS13170
AL549_RS13185	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
AL549_RS13445	PF00593	TonB dependent receptor
AL549_RS13455	PF00989	PAS fold
AL549_RS13455	PF13426	PAS domain
AL549_RS13745	PF01292	Prokaryotic cytochrome b561
AL549_RS13755	PF00270	DEAD/DEAH box helicase
AL549_RS13805	PF01966	HD domain
AL549_RS13855	PF06483	AL549_RS13855
AL549_RS13865	PF00704	Glycosyl hydrolases family 18
AL549_RS13945	PF02302	PTS system, Lactose/Cellobiose specific IIB subunit
AL549_RS14115	PF13584	AL549_RS14115
AL549_RS14145	PF03466	LysR substrate binding domain
AL549_RS14310	PF03781	Sulfatase-modifying factor enzyme 1
AL549_RS14550	PF00487	AL549_RS14550
AL549_RS14575	PF02653	AL549_RS14575
AL549_RS14895	PF01266	FAD dependent oxidoreductase
AL549_RS14955	PF12833	Helix-turn-helix domain
AL549_RS15205	PF03710	Glutamate-ammonia ligase adenylyltransferase
AL549_RS15205	PF08335	GlnD PII-uridylyltransferase
AL549_RS15415	PF02786	Carbamoyl-phosphate synthase L chain, ATP binding domain
AL549_RS15415	PF02787	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AL549_RS15435	PF01497	Periplasmic binding protein
AL549_RS15455	PF01645	Conserved region in glutamate synthase
AL549_RS15455	PF04898	Glutamate synthase central domain
AL549_RS15745	PF00793	DAHP synthetase I family
AL549_RS16090	PF04551	GcpE protein
AL549_RS16145	PF00478	IMP dehydrogenase / GMP reductase domain
AL549_RS16145	PF00571	CBS domain
AL549_RS16405	PF02769	AIR synthase related protein, C-terminal domain
AL549_RS16405	PF13507	CobB/CobQ-like glutamine amidotransferase domain
AL549_RS16585	PF13424	Tetratricopeptide repeat
AL549_RS16750	PF13369	AL549_RS16750
AL549_RS16750	PF13371	Tetratricopeptide repeat
AL549_RS16850	PF13006	AL549_RS16850
AL549_RS17110	PF00258	Flavodoxin
AL549_RS17325	PF00221	Aromatic amino acid lyase
AL549_RS17380	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS17380	PF00672	HAMP domain
AL549_RS17405	PF01547	Bacterial extracellular solute-binding protein
AL549_RS17605	PF03601	AL549_RS17605
AL549_RS17870	PF01627	Hpt domain
AL549_RS18055	PF02508	AL549_RS18055
AL549_RS18340	PF01578	AL549_RS18340
AL549_RS18465	PF00209	Sodium:neurotransmitter symporter family
AL549_RS18535	PF00817	impB/mucB/samB family
AL549_RS18695	PF13491	AL549_RS18695
AL549_RS18740	PF00202	Aminotransferase class-III
AL549_RS19010	PF11150	AL549_RS19010
AL549_RS19015	PF11150	AL549_RS19015
AL549_RS19125	PF00209	Sodium:neurotransmitter symporter family
AL549_RS19170	PF00158	Sigma-54 interaction domain
AL549_RS19290	PF06965	Na+/H+ antiporter 1
AL549_RS19315	PF12241	Trans-2-enoyl-CoA reductase catalytic region
AL549_RS19345	PF00282	Pyridoxal-dependent decarboxylase conserved domain
AL549_RS19385	PF00512	His Kinase A (phospho-acceptor) domain
AL549_RS19480	PF00271	Helicase conserved C-terminal domain
AL549_RS19480	PF04408	Helicase associated domain (HA2)
AL549_RS19615	PF01546	Peptidase family M20/M25/M40
AL549_RS19685	PF00141	Peroxidase
AL549_RS19795	PF04851	Type III restriction enzyme, res subunit
AL549_RS19795	PF13588	Type I restriction enzyme R protein N terminus (HSDR_N)
AL549_RS20010	PF07691	PA14 domain
AL549_RS20435	PF05088	AL549_RS20435
AL549_RS20445	PF01180	Dihydroorotate dehydrogenase
AL549_RS20625	PF13343	Bacterial extracellular solute-binding protein
AL549_RS20725	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain
AL549_RS20735	PF00005	ABC transporter
AL549_RS20735	PF12848	ABC transporter
AL549_RS21880	PF00589	Phage integrase family
AL549_RS21935	PF00221	Aromatic amino acid lyase
AL549_RS22025	PF04095	Nicotinate phosphoribosyltransferase (NAPRTase) family
AL549_RS22075	PF16313	AL549_RS22075
AL549_RS22175	PF07717	Oligonucleotide/oligosaccharide-binding (OB)-fold
AL549_RS22175	PF11898	AL549_RS22175
AL549_RS22180	PF00270	DEAD/DEAH box helicase
AL549_RS22180	PF00271	Helicase conserved C-terminal domain