AL549_RS00045 SM00267 diguanylate cyclase AL549_RS00060 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS00095 SM00382 ATPases associated with a variety of cellular activities AL549_RS00150 SM00382 ATPases associated with a variety of cellular activities AL549_RS00160 SM00421 helix_turn_helix, Lux Regulon AL549_RS00165 SM00421 helix_turn_helix, Lux Regulon AL549_RS00175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS00175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS00195 SM00327 von Willebrand factor (vWF) type A domain AL549_RS00200 SM00028 Tetratricopeptide repeats AL549_RS00200 SM00327 von Willebrand factor (vWF) type A domain AL549_RS00210 SM00267 diguanylate cyclase AL549_RS00215 SM00382 ATPases associated with a variety of cellular activities AL549_RS00235 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS00235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS00240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS00240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS00265 SM00487 DEAD-like helicases superfamily AL549_RS00265 SM00490 helicase superfamily c-terminal domain AL549_RS00275 SM00257 Lysin motif AL549_RS00285 SM00422 helix_turn_helix, mercury resistance AL549_RS00305 SM00028 Tetratricopeptide repeats AL549_RS00310 SM00267 diguanylate cyclase AL549_RS00330 SM00382 ATPases associated with a variety of cellular activities AL549_RS00345 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL549_RS00345 SM00245 tail specific protease AL549_RS00365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS00365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS00380 SM01057 Eukaryotic-type carbonic anhydrase AL549_RS00405 SM00382 ATPases associated with a variety of cellular activities AL549_RS00420 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS00420 SM00387 Histidine kinase-like ATPases AL549_RS00420 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS00420 SM00448 cheY-homologous receiver domain AL549_RS00425 SM00052 Putative diguanylate phosphodiesterase AL549_RS00425 SM00448 cheY-homologous receiver domain AL549_RS00430 SM00421 helix_turn_helix, Lux Regulon AL549_RS00430 SM00448 cheY-homologous receiver domain AL549_RS00435 SM00267 diguanylate cyclase AL549_RS00440 SM00421 helix_turn_helix, Lux Regulon AL549_RS00440 SM00448 cheY-homologous receiver domain AL549_RS00465 SM00849 Metallo-beta-lactamase superfamily AL549_RS00530 SM00829 Enoylreductase AL549_RS00580 SM01060 AL549_RS00580 AL549_RS00585 SM00248 ankyrin repeats AL549_RS00600 SM00481 DNA polymerase alpha chain like domain AL549_RS00610 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS00635 SM00267 diguanylate cyclase AL549_RS00635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS00680 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS00745 SM00014 Acid phosphatase homologues AL549_RS00820 SM00448 cheY-homologous receiver domain AL549_RS00820 SM00862 Transcriptional regulatory protein, C terminal AL549_RS00825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS00825 SM00387 Histidine kinase-like ATPases AL549_RS00825 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS00850 SM00642 Alpha-amylase domain AL549_RS00860 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS00870 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS00870 SM00267 diguanylate cyclase AL549_RS00880 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS00905 SM00421 helix_turn_helix, Lux Regulon AL549_RS00925 SM00849 Metallo-beta-lactamase superfamily AL549_RS01010 SM00357 Cold shock protein domain AL549_RS01070 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS01100 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS01125 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS01140 SM00421 helix_turn_helix, Lux Regulon AL549_RS01160 SM00849 Metallo-beta-lactamase superfamily AL549_RS01165 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS01165 SM00382 ATPases associated with a variety of cellular activities AL549_RS01185 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS01185 SM00871 Bacterial transcription activator, effector binding domain AL549_RS01225 SM01038 Beta galactosidase small chain AL549_RS01235 SM00382 ATPases associated with a variety of cellular activities AL549_RS01245 SM00354 helix_turn _helix lactose operon repressor AL549_RS01265 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS01265 SM00267 diguanylate cyclase AL549_RS01320 SM01217 AL549_RS01320 AL549_RS01325 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS01345 SM00354 helix_turn _helix lactose operon repressor AL549_RS01355 SM00382 ATPases associated with a variety of cellular activities AL549_RS01360 SM00382 ATPases associated with a variety of cellular activities AL549_RS01385 SM00354 helix_turn _helix lactose operon repressor AL549_RS01390 SM00382 ATPases associated with a variety of cellular activities AL549_RS01415 SM00354 helix_turn _helix lactose operon repressor AL549_RS01435 SM00267 diguanylate cyclase AL549_RS01440 SM00448 cheY-homologous receiver domain AL549_RS01440 SM00862 Transcriptional regulatory protein, C terminal AL549_RS01445 SM00387 Histidine kinase-like ATPases AL549_RS01445 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS01475 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS01490 SM00052 Putative diguanylate phosphodiesterase AL549_RS01500 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS01500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS01515 SM00495 Chitin-binding domain type 3 AL549_RS01530 SM00344 helix_turn_helix ASNC type AL549_RS01540 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_RS01545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS01545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS01545 SM01358 AL549_RS01545 AL549_RS01550 SM00642 Alpha-amylase domain AL549_RS01565 SM00421 helix_turn_helix, Lux Regulon AL549_RS01630 SM00671 Sel1-like repeats. AL549_RS01635 SM00642 Alpha-amylase domain AL549_RS01660 SM00642 Alpha-amylase domain AL549_RS01665 SM00267 diguanylate cyclase AL549_RS01670 SM00267 diguanylate cyclase AL549_RS01695 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL549_RS01695 SM00495 Chitin-binding domain type 3 AL549_RS01695 SM00636 AL549_RS01695 AL549_RS01740 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS01740 SM01009 AlkA N-terminal domain AL549_RS01765 SM01154 AL549_RS01765 AL549_RS01800 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS01800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS01800 SM01049 AL549_RS01800 AL549_RS01805 SM00448 cheY-homologous receiver domain AL549_RS01805 SM00850 LytTr DNA-binding domain AL549_RS01810 SM00387 Histidine kinase-like ATPases AL549_RS01830 SM00382 ATPases associated with a variety of cellular activities AL549_RS01860 SM00387 Histidine kinase-like ATPases AL549_RS01860 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS01860 SM00448 cheY-homologous receiver domain AL549_RS01885 SM00382 ATPases associated with a variety of cellular activities AL549_RS01890 SM00382 ATPases associated with a variety of cellular activities AL549_RS01910 SM00470 ParB-like nuclease domain AL549_RS01925 SM00448 cheY-homologous receiver domain AL549_RS01930 SM00073 Histidine Phosphotransfer domain AL549_RS01930 SM00260 Two component signalling adaptor domain AL549_RS01930 SM00387 Histidine kinase-like ATPases AL549_RS01930 SM01231 AL549_RS01930 AL549_RS01935 SM00260 Two component signalling adaptor domain AL549_RS01940 SM00260 Two component signalling adaptor domain AL549_RS01945 SM00091 PAS domain AL549_RS01945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS01945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS01950 SM00138 Methyltransferase, chemotaxis proteins AL549_RS01960 SM00448 cheY-homologous receiver domain AL549_RS01965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS01975 SM00331 Sigma factor PP2C-like phosphatases AL549_RS01975 SM00448 cheY-homologous receiver domain AL549_RS01985 SM00248 ankyrin repeats AL549_RS02025 SM00855 Phosphoglycerate mutase family AL549_RS02030 SM00052 Putative diguanylate phosphodiesterase AL549_RS02065 SM01266 AL549_RS02065 AL549_RS02070 SM00883 Chaperonin 10 Kd subunit AL549_RS02090 SM00382 ATPases associated with a variety of cellular activities AL549_RS02095 SM00052 Putative diguanylate phosphodiesterase AL549_RS02095 SM00267 diguanylate cyclase AL549_RS02110 SM00448 cheY-homologous receiver domain AL549_RS02115 SM00387 Histidine kinase-like ATPases AL549_RS02115 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS02125 SM00421 helix_turn_helix, Lux Regulon AL549_RS02130 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS02150 SM00344 helix_turn_helix ASNC type AL549_RS02205 SM00382 ATPases associated with a variety of cellular activities AL549_RS02210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS02210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS02260 SM00382 ATPases associated with a variety of cellular activities AL549_RS02280 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AL549_RS02290 SM01007 Class II Aldolase and Adducin N-terminal domain AL549_RS02305 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_RS02305 SM01134 AL549_RS02305 AL549_RS02375 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS02375 SM00895 AL549_RS02375 AL549_RS02385 SM00487 DEAD-like helicases superfamily AL549_RS02385 SM00490 helicase superfamily c-terminal domain AL549_RS02400 SM00354 helix_turn _helix lactose operon repressor AL549_RS02435 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS02440 SM00829 Enoylreductase AL549_RS02465 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS02485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS02515 SM00671 Sel1-like repeats. AL549_RS02535 SM00849 Metallo-beta-lactamase superfamily AL549_RS02550 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS02560 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_RS02560 SM01134 AL549_RS02560 AL549_RS02565 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_RS02565 SM01134 AL549_RS02565 AL549_RS02610 SM00382 ATPases associated with a variety of cellular activities AL549_RS02620 SM00895 AL549_RS02620 AL549_RS02635 SM00382 ATPases associated with a variety of cellular activities AL549_RS02670 SM00382 ATPases associated with a variety of cellular activities AL549_RS02675 SM00479 AL549_RS02675 AL549_RS02695 SM00267 diguanylate cyclase AL549_RS02730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS02730 SM00387 Histidine kinase-like ATPases AL549_RS02730 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS02735 SM00448 cheY-homologous receiver domain AL549_RS02735 SM00862 Transcriptional regulatory protein, C terminal AL549_RS02745 SM00849 Metallo-beta-lactamase superfamily AL549_RS02755 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_RS02755 SM00387 Histidine kinase-like ATPases AL549_RS02760 SM00382 ATPases associated with a variety of cellular activities AL549_RS02760 SM00448 cheY-homologous receiver domain AL549_RS02785 SM00448 cheY-homologous receiver domain AL549_RS02785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS02790 SM00073 Histidine Phosphotransfer domain AL549_RS02790 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_RS02790 SM00091 PAS domain AL549_RS02790 SM00387 Histidine kinase-like ATPases AL549_RS02790 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS02790 SM00448 cheY-homologous receiver domain AL549_RS02795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS02795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS02850 SM00487 DEAD-like helicases superfamily AL549_RS02850 SM00490 helicase superfamily c-terminal domain AL549_RS02915 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS02975 SM00838 Elongation factor G C-terminus AL549_RS02975 SM00889 Elongation factor G, domain IV AL549_RS02985 SM00267 diguanylate cyclase AL549_RS02985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS03000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS03000 SM00387 Histidine kinase-like ATPases AL549_RS03005 SM00448 cheY-homologous receiver domain AL549_RS03005 SM00862 Transcriptional regulatory protein, C terminal AL549_RS03020 SM00422 helix_turn_helix, mercury resistance AL549_RS03030 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS03045 SM00387 Histidine kinase-like ATPases AL549_RS03045 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS03045 SM00448 cheY-homologous receiver domain AL549_RS03105 SM00479 AL549_RS03105 AL549_RS03110 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS03115 SM00346 helix_turn_helix isocitrate lyase regulation AL549_RS03200 SM00642 Alpha-amylase domain AL549_RS03255 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL549_RS03290 SM00028 Tetratricopeptide repeats AL549_RS03295 SM00849 Metallo-beta-lactamase superfamily AL549_RS03330 SM00421 helix_turn_helix, Lux Regulon AL549_RS03355 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_RS03355 SM00091 PAS domain AL549_RS03355 SM00267 diguanylate cyclase AL549_RS03360 SM00382 ATPases associated with a variety of cellular activities AL549_RS03375 SM01091 Transporter associated domain AL549_RS03405 SM00354 helix_turn _helix lactose operon repressor AL549_RS03425 SM00382 ATPases associated with a variety of cellular activities AL549_RS03465 SM00849 Metallo-beta-lactamase superfamily AL549_RS03510 SM00830 Chorismate mutase type II AL549_RS03550 SM00823 Phosphopantetheine attachment site AL549_RS03570 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS03575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS03575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS03580 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS03590 SM00052 Putative diguanylate phosphodiesterase AL549_RS03595 SM00495 Chitin-binding domain type 3 AL549_RS03615 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS03620 SM00382 ATPases associated with a variety of cellular activities AL549_RS03640 SM00052 Putative diguanylate phosphodiesterase AL549_RS03650 SM00849 Metallo-beta-lactamase superfamily AL549_RS03680 SM00563 Phosphate acyltransferases AL549_RS03685 SM00327 von Willebrand factor (vWF) type A domain AL549_RS03685 SM00609 Vault protein Inter-alpha-Trypsin domain AL549_RS03730 SM00382 ATPases associated with a variety of cellular activities AL549_RS03755 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS03755 SM00871 Bacterial transcription activator, effector binding domain AL549_RS03760 SM00924 MgtE intracellular N domain AL549_RS03775 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS03785 SM00448 cheY-homologous receiver domain AL549_RS03785 SM00862 Transcriptional regulatory protein, C terminal AL549_RS03790 SM00387 Histidine kinase-like ATPases AL549_RS03790 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS03800 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS03820 SM00344 helix_turn_helix ASNC type AL549_RS03840 SM00788 Adenylosuccinate synthetase AL549_RS03855 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_RS03870 SM00387 Histidine kinase-like ATPases AL549_RS03870 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS03870 SM00448 cheY-homologous receiver domain AL549_RS03910 SM00387 Histidine kinase-like ATPases AL549_RS03910 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS03910 SM00448 cheY-homologous receiver domain AL549_RS03925 SM00344 helix_turn_helix ASNC type AL549_RS03960 SM00822 AL549_RS03960 AL549_RS04015 SM01130 AL549_RS04015 AL549_RS04045 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS04055 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS04055 SM00387 Histidine kinase-like ATPases AL549_RS04060 SM00421 helix_turn_helix, Lux Regulon AL549_RS04060 SM00448 cheY-homologous receiver domain AL549_RS04070 SM00448 cheY-homologous receiver domain AL549_RS04090 SM01240 AL549_RS04090 AL549_RS04180 SM00487 DEAD-like helicases superfamily AL549_RS04180 SM00490 helicase superfamily c-terminal domain AL549_RS04195 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_RS04230 SM00382 ATPases associated with a variety of cellular activities AL549_RS04245 SM01119 AL549_RS04245 AL549_RS04280 SM00052 Putative diguanylate phosphodiesterase AL549_RS04280 SM00267 diguanylate cyclase AL549_RS04310 SM00052 Putative diguanylate phosphodiesterase AL549_RS04310 SM00267 diguanylate cyclase AL549_RS04335 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_RS04355 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS04430 SM00091 PAS domain AL549_RS04430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS04435 SM00052 Putative diguanylate phosphodiesterase AL549_RS04435 SM00267 diguanylate cyclase AL549_RS04435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS04445 SM00861 Transketolase, pyrimidine binding domain AL549_RS04460 SM00636 AL549_RS04460 AL549_RS04465 SM00052 Putative diguanylate phosphodiesterase AL549_RS04465 SM00267 diguanylate cyclase AL549_RS04470 SM00450 Rhodanese Homology Domain AL549_RS04480 SM00852 Probable molybdopterin binding domain AL549_RS04550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS04550 SM01358 AL549_RS04550 AL549_RS04585 SM01322 AL549_RS04585 AL549_RS04590 SM00357 Cold shock protein domain AL549_RS04605 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS04605 SM00267 diguanylate cyclase AL549_RS04625 SM00387 Histidine kinase-like ATPases AL549_RS04630 SM00421 helix_turn_helix, Lux Regulon AL549_RS04630 SM00448 cheY-homologous receiver domain AL549_RS04650 SM00829 Enoylreductase AL549_RS04670 SM00357 Cold shock protein domain AL549_RS04705 SM00422 helix_turn_helix, mercury resistance AL549_RS04740 SM00822 AL549_RS04740 AL549_RS04760 SM00382 ATPases associated with a variety of cellular activities AL549_RS04770 SM00382 ATPases associated with a variety of cellular activities AL549_RS04790 SM01005 Alanine racemase, C-terminal domain AL549_RS04795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS04795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS04805 SM00893 Electron transfer flavoprotein domain AL549_RS04810 SM00893 Electron transfer flavoprotein domain AL549_RS04820 SM00861 Transketolase, pyrimidine binding domain AL549_RS04840 SM00448 cheY-homologous receiver domain AL549_RS04840 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS04845 SM00387 Histidine kinase-like ATPases AL549_RS04895 SM00052 Putative diguanylate phosphodiesterase AL549_RS04895 SM00267 diguanylate cyclase AL549_RS04930 SM00220 Serine/Threonine protein kinases, catalytic domain AL549_RS04935 SM00240 Forkhead associated domain AL549_RS04965 SM00331 Sigma factor PP2C-like phosphatases AL549_RS04965 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AL549_RS05010 SM00382 ATPases associated with a variety of cellular activities AL549_RS05010 SM01086 C-terminal, D2-small domain, of ClpB protein AL549_RS05135 SM00458 Ricin-type beta-trefoil AL549_RS05145 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS05145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05150 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS05150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05155 SM00642 Alpha-amylase domain AL549_RS05165 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS05185 SM01012 AL549_RS05185 AL549_RS05200 SM00382 ATPases associated with a variety of cellular activities AL549_RS05220 SM00028 Tetratricopeptide repeats AL549_RS05220 SM00267 diguanylate cyclase AL549_RS05230 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL549_RS05240 SM00487 DEAD-like helicases superfamily AL549_RS05240 SM00490 helicase superfamily c-terminal domain AL549_RS05255 SM00267 diguanylate cyclase AL549_RS05255 SM00448 cheY-homologous receiver domain AL549_RS05265 SM00138 Methyltransferase, chemotaxis proteins AL549_RS05270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05270 SM00387 Histidine kinase-like ATPases AL549_RS05270 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS05270 SM00448 cheY-homologous receiver domain AL549_RS05295 SM00091 PAS domain AL549_RS05295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS05355 SM00028 Tetratricopeptide repeats AL549_RS05365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS05365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05365 SM01049 AL549_RS05365 AL549_RS05385 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS05415 SM00450 Rhodanese Homology Domain AL549_RS05425 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL549_RS05465 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS05465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05510 SM00382 ATPases associated with a variety of cellular activities AL549_RS05520 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_RS05530 SM00267 diguanylate cyclase AL549_RS05530 SM00448 cheY-homologous receiver domain AL549_RS05540 SM00267 diguanylate cyclase AL549_RS05555 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL549_RS05555 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL549_RS05565 SM00387 Histidine kinase-like ATPases AL549_RS05565 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS05570 SM00448 cheY-homologous receiver domain AL549_RS05570 SM00862 Transcriptional regulatory protein, C terminal AL549_RS05610 SM00881 CoA binding domain AL549_RS05625 SM00091 PAS domain AL549_RS05625 SM00267 diguanylate cyclase AL549_RS05625 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05640 SM00796 Allophanate hydrolase subunit 1 AL549_RS05645 SM00797 Allophanate hydrolase subunit 2 AL549_RS05660 SM00382 ATPases associated with a variety of cellular activities AL549_RS05675 SM00052 Putative diguanylate phosphodiesterase AL549_RS05675 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS05675 SM00267 diguanylate cyclase AL549_RS05690 SM00271 DnaJ molecular chaperone homology domain AL549_RS05715 SM00642 Alpha-amylase domain AL549_RS05760 SM00782 PhnA Zinc-Ribbon AL549_RS05810 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS05815 SM00867 YceI-like domain AL549_RS05830 SM00052 Putative diguanylate phosphodiesterase AL549_RS05835 SM00487 DEAD-like helicases superfamily AL549_RS05835 SM00490 helicase superfamily c-terminal domain AL549_RS05845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS05855 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS05885 SM00495 Chitin-binding domain type 3 AL549_RS05885 SM00636 AL549_RS05885 AL549_RS05890 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS05900 SM00448 cheY-homologous receiver domain AL549_RS05905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05905 SM00387 Histidine kinase-like ATPases AL549_RS05905 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS05925 SM00052 Putative diguanylate phosphodiesterase AL549_RS05945 SM00354 helix_turn _helix lactose operon repressor AL549_RS05990 SM00020 Trypsin-like serine protease AL549_RS06000 SM00530 Helix-turn-helix XRE-family like proteins AL549_RS06035 SM00382 ATPases associated with a variety of cellular activities AL549_RS06095 SM00990 AL549_RS06095 AL549_RS06100 SM00028 Tetratricopeptide repeats AL549_RS06135 SM00327 von Willebrand factor (vWF) type A domain AL549_RS06180 SM00487 DEAD-like helicases superfamily AL549_RS06180 SM00490 helicase superfamily c-terminal domain AL549_RS06185 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_RS06185 SM00357 Cold shock protein domain AL549_RS06185 SM00955 AL549_RS06185 AL549_RS06190 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS06205 SM00635 Bacterial Ig-like domain 2 AL549_RS06210 SM00052 Putative diguanylate phosphodiesterase AL549_RS06210 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS06210 SM00267 diguanylate cyclase AL549_RS06220 SM00448 cheY-homologous receiver domain AL549_RS06225 SM00052 Putative diguanylate phosphodiesterase AL549_RS06225 SM00421 helix_turn_helix, Lux Regulon AL549_RS06225 SM00448 cheY-homologous receiver domain AL549_RS06230 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS06230 SM00387 Histidine kinase-like ATPases AL549_RS06230 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS06230 SM00448 cheY-homologous receiver domain AL549_RS06235 SM00487 DEAD-like helicases superfamily AL549_RS06235 SM00490 helicase superfamily c-terminal domain AL549_RS06285 SM00073 Histidine Phosphotransfer domain AL549_RS06285 SM00387 Histidine kinase-like ATPases AL549_RS06285 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS06285 SM00448 cheY-homologous receiver domain AL549_RS06295 SM00851 MGS-like domain AL549_RS06335 SM00422 helix_turn_helix, mercury resistance AL549_RS06340 SM00382 ATPases associated with a variety of cellular activities AL549_RS06365 SM01266 AL549_RS06365 AL549_RS06370 SM00448 cheY-homologous receiver domain AL549_RS06375 SM00091 PAS domain AL549_RS06375 SM00387 Histidine kinase-like ATPases AL549_RS06420 SM00327 von Willebrand factor (vWF) type A domain AL549_RS06505 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_RS06505 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS06525 SM00260 Two component signalling adaptor domain AL549_RS06525 SM00448 cheY-homologous receiver domain AL549_RS06530 SM00354 helix_turn _helix lactose operon repressor AL549_RS06550 SM00382 ATPases associated with a variety of cellular activities AL549_RS06575 SM00327 von Willebrand factor (vWF) type A domain AL549_RS06580 SM00382 ATPases associated with a variety of cellular activities AL549_RS06615 SM00014 Acid phosphatase homologues AL549_RS06620 SM01022 AL549_RS06620 AL549_RS06645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS06645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS06720 SM00450 Rhodanese Homology Domain AL549_RS06805 SM00382 ATPases associated with a variety of cellular activities AL549_RS06835 SM00028 Tetratricopeptide repeats AL549_RS06850 SM00936 Penicillin-binding protein 5, C-terminal domain AL549_RS06900 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS06900 SM00866 AL549_RS06900 AL549_RS06910 SM00382 ATPases associated with a variety of cellular activities AL549_RS06940 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS06940 SM00871 Bacterial transcription activator, effector binding domain AL549_RS06955 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS06965 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS06990 SM01266 AL549_RS06990 AL549_RS07005 SM00267 diguanylate cyclase AL549_RS07015 SM00530 Helix-turn-helix XRE-family like proteins AL549_RS07020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS07020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS07025 SM00267 diguanylate cyclase AL549_RS07025 SM01079 AL549_RS07025 AL549_RS07115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS07115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS07120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS07120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS07125 SM00642 Alpha-amylase domain AL549_RS07140 SM00260 Two component signalling adaptor domain AL549_RS07140 SM00448 cheY-homologous receiver domain AL549_RS07160 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_RS07190 SM00382 ATPases associated with a variety of cellular activities AL549_RS07580 SM01057 Eukaryotic-type carbonic anhydrase AL549_RS07690 SM00387 Histidine kinase-like ATPases AL549_RS07690 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS07740 SM00849 Metallo-beta-lactamase superfamily AL549_RS08550 SM00354 helix_turn _helix lactose operon repressor AL549_RS09305 SM01049 AL549_RS09305 AL549_RS09480 SM00331 Sigma factor PP2C-like phosphatases AL549_RS10645 SM00387 Histidine kinase-like ATPases AL549_RS10645 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS11955 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS12995 SM00387 Histidine kinase-like ATPases AL549_RS13455 SM00091 PAS domain AL549_RS14955 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS15415 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL549_RS16145 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS16145 SM01240 AL549_RS16145 AL549_RS16405 SM01211 AL549_RS16405 AL549_RS16585 SM00028 Tetratricopeptide repeats AL549_RS17380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS17380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS19480 SM00490 helicase superfamily c-terminal domain AL549_RS19480 SM00847 Helicase associated domain (HA2) Add an annotation AL549_RS19795 SM00487 DEAD-like helicases superfamily AL549_RS22180 SM00382 ATPases associated with a variety of cellular activities AL549_RS22180 SM00487 DEAD-like helicases superfamily AL549_RS22180 SM00490 helicase superfamily c-terminal domain