locus-tag class description AL549_RS00030 PF02540 NAD synthase AL549_RS00035 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_RS00035 PF03473 MOSC domain AL549_RS00035 PF03476 MOSC N-terminal beta barrel domain AL549_RS00035 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_RS00035 PF03473 MOSC domain AL549_RS00035 PF03476 MOSC N-terminal beta barrel domain AL549_RS00040 PF01979 Amidohydrolase family AL549_RS00045 PF17151 Periplasmic sensor domain AL549_RS00045 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00050 PF05661 Protein of unknown function (DUF808) AL549_RS00080 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS00085 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS00085 PF14785 Maltose transport system permease protein MalF P2 domain AL549_RS00090 PF01547 Bacterial extracellular solute-binding protein AL549_RS00100 PF00005 ABC transporter AL549_RS00100 PF08402 TOBE domain AL549_RS00105 PF02397 Bacterial sugar transferase AL549_RS00115 PF02563 Polysaccharide biosynthesis/export protein AL549_RS00115 PF10531 SLBB domain AL549_RS00120 PF13807 G-rich domain on putative tyrosine kinase AL549_RS00120 PF02706 Chain length determinant protein AL549_RS00120 PF13614 AAA domain AL549_RS00125 PF00534 Glycosyl transferases group 1 AL549_RS00125 PF13439 Glycosyltransferase Family 4 AL549_RS00135 PF00534 Glycosyl transferases group 1 AL549_RS00135 PF13439 Glycosyltransferase Family 4 AL549_RS00150 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS00155 PF00664 ABC transporter transmembrane region AL549_RS00155 PF00005 ABC transporter AL549_RS00165 PF00196 Bacterial regulatory proteins, luxR family AL549_RS00170 PF00196 Bacterial regulatory proteins, luxR family AL549_RS00180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS00180 PF02743 Cache domain AL549_RS00180 PF00672 HAMP domain AL549_RS00185 PF17863 AAA lid domain AL549_RS00185 PF07726 ATPase family associated with various cellular activities (AAA) AL549_RS00190 PF01882 Protein of unknown function DUF58 AL549_RS00205 PF07584 Aerotolerance regulator N-terminal AL549_RS00205 PF00092 von Willebrand factor type A domain AL549_RS00215 PF01590 GAF domain AL549_RS00215 PF00563 EAL domain AL549_RS00215 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00215 PF00360 Phytochrome region AL549_RS00220 PF00005 ABC transporter AL549_RS00225 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS00230 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS00235 PF12849 PBP superfamily domain AL549_RS00240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS00240 PF00672 HAMP domain AL549_RS00240 PF12729 Four helix bundle sensory module for signal transduction AL549_RS00245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS00245 PF00672 HAMP domain AL549_RS00245 PF02743 Cache domain AL549_RS00265 PF07715 TonB-dependent Receptor Plug Domain AL549_RS00265 PF00593 TonB dependent receptor AL549_RS00270 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL549_RS00270 PF00326 Prolyl oligopeptidase family AL549_RS00275 PF00270 DEAD/DEAH box helicase AL549_RS00275 PF00271 Helicase conserved C-terminal domain AL549_RS00285 PF17969 L,D-transpeptidase C-terminal domain AL549_RS00285 PF01476 LysM domain AL549_RS00285 PF03734 L,D-transpeptidase catalytic domain AL549_RS00290 PF00875 DNA photolyase AL549_RS00290 PF03441 FAD binding domain of DNA photolyase AL549_RS00295 PF13411 MerR HTH family regulatory protein AL549_RS00300 PF08349 Protein of unknown function (DUF1722) AL549_RS00305 PF01048 Phosphorylase superfamily AL549_RS00320 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00325 PF11742 Protein of unknown function (DUF3302) AL549_RS00330 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS00330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_RS00335 PF07155 ECF-type riboflavin transporter, S component AL549_RS00340 PF00005 ABC transporter AL549_RS00340 PF12558 ATP-binding cassette cobalt transporter AL549_RS00355 PF14685 Tricorn protease PDZ domain AL549_RS00355 PF07676 WD40-like Beta Propeller Repeat AL549_RS00355 PF03572 Peptidase family S41 AL549_RS00355 PF14684 Tricorn protease C1 domain AL549_RS00360 PF13302 Acetyltransferase (GNAT) domain AL549_RS00370 PF07238 PilZ domain AL549_RS00370 PF12945 Flagellar protein YcgR AL549_RS00375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS00375 PF00672 HAMP domain AL549_RS00385 PF00924 Mechanosensitive ion channel AL549_RS00390 PF00194 Eukaryotic-type carbonic anhydrase AL549_RS00395 PF12849 PBP superfamily domain AL549_RS00405 PF02321 Outer membrane efflux protein AL549_RS00410 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS00415 PF00664 ABC transporter transmembrane region AL549_RS00415 PF00005 ABC transporter AL549_RS00415 PF03412 Peptidase C39 family AL549_RS00425 PF04076 Bacterial OB fold (BOF) protein AL549_RS00430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS00430 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS00430 PF09456 RcsC Alpha-Beta-Loop (ABL) AL549_RS00430 PF00072 Response regulator receiver domain AL549_RS00435 PF00563 EAL domain AL549_RS00435 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00435 PF03707 Bacterial signalling protein N terminal repeat AL549_RS00440 PF00196 Bacterial regulatory proteins, luxR family AL549_RS00440 PF00072 Response regulator receiver domain AL549_RS00445 PF03707 Bacterial signalling protein N terminal repeat AL549_RS00445 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00445 PF00563 EAL domain AL549_RS00450 PF00072 Response regulator receiver domain AL549_RS00450 PF00196 Bacterial regulatory proteins, luxR family AL549_RS00460 PF01593 Flavin containing amine oxidoreductase AL549_RS00470 PF03466 LysR substrate binding domain AL549_RS00470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00490 PF08212 Lipocalin-like domain AL549_RS00545 PF08240 Alcohol dehydrogenase GroES-like domain AL549_RS00545 PF00107 Zinc-binding dehydrogenase AL549_RS00550 PF00155 Aminotransferase class I and II AL549_RS00555 PF00657 GDSL-like Lipase/Acylhydrolase AL549_RS00560 PF05922 Peptidase inhibitor I9 AL549_RS00560 PF00082 Subtilase family AL549_RS00570 PF07690 Major Facilitator Superfamily AL549_RS00575 PF03466 LysR substrate binding domain AL549_RS00575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_RS00600 PF00199 Catalase AL549_RS00600 PF06628 Catalase-related immune-responsive AL549_RS00610 PF00080 Copper/zinc superoxide dismutase (SODC) AL549_RS00630 PF01966 HD domain AL549_RS00640 PF03466 LysR substrate binding domain AL549_RS00640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00645 PF01906 Putative heavy-metal-binding AL549_RS00655 PF00563 EAL domain AL549_RS00655 PF03707 Bacterial signalling protein N terminal repeat AL549_RS00655 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00665 PF07715 TonB-dependent Receptor Plug Domain AL549_RS00665 PF00593 TonB dependent receptor AL549_RS00670 PF13416 Bacterial extracellular solute-binding protein AL549_RS00675 PF00056 lactate/malate dehydrogenase, NAD binding domain AL549_RS00675 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL549_RS00695 PF07690 Major Facilitator Superfamily AL549_RS00705 PF10928 Protein of unknown function (DUF2810) AL549_RS00765 PF04013 Putative SAM-dependent RNA methyltransferase AL549_RS00770 PF08543 Phosphomethylpyrimidine kinase AL549_RS00775 PF01569 PAP2 superfamily AL549_RS00800 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL549_RS00805 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL549_RS00810 PF01323 DSBA-like thioredoxin domain AL549_RS00830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00830 PF03466 LysR substrate binding domain AL549_RS00835 PF00106 short chain dehydrogenase AL549_RS00840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00840 PF03466 LysR substrate binding domain AL549_RS00855 PF00486 Transcriptional regulatory protein, C terminal AL549_RS00855 PF00072 Response regulator receiver domain AL549_RS00860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS00860 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS00860 PF00672 HAMP domain AL549_RS00865 PF01219 Prokaryotic diacylglycerol kinase AL549_RS00870 PF08019 Phosphoethanolamine transferase EptA/EptB AL549_RS00870 PF00884 Sulfatase AL549_RS00875 PF00884 Sulfatase AL549_RS00885 PF16657 Maltogenic Amylase, C-terminal domain AL549_RS00885 PF02903 Alpha amylase, N-terminal ig-like domain AL549_RS00885 PF00128 Alpha amylase, catalytic domain AL549_RS00890 PF04231 Endonuclease I AL549_RS00905 PF08448 PAS fold AL549_RS00905 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS00915 PF00392 Bacterial regulatory proteins, gntR family AL549_RS00915 PF00155 Aminotransferase class I and II AL549_RS00945 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AL549_RS00950 PF05958 tRNA (Uracil-5-)-methyltransferase AL549_RS00955 PF00881 Nitroreductase family AL549_RS00965 PF03466 LysR substrate binding domain AL549_RS00965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS00995 PF00375 Sodium:dicarboxylate symporter family AL549_RS01000 PF03466 LysR substrate binding domain AL549_RS01000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01005 PF00764 Arginosuccinate synthase AL549_RS01025 PF01638 HxlR-like helix-turn-helix AL549_RS01030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01030 PF03466 LysR substrate binding domain AL549_RS01050 PF01048 Phosphorylase superfamily AL549_RS01055 PF04973 Nicotinamide mononucleotide transporter AL549_RS01080 PF01752 Collagenase AL549_RS01080 PF08453 Peptidase family M9 N-terminal AL549_RS01080 PF04151 Bacterial pre-peptidase C-terminal domain AL549_RS01085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01090 PF01048 Phosphorylase superfamily AL549_RS01095 PF03466 LysR substrate binding domain AL549_RS01095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01105 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL549_RS01105 PF12838 4Fe-4S dicluster domain AL549_RS01105 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS01105 PF01568 Molydopterin dinucleotide binding domain AL549_RS01105 PF00384 Molybdopterin oxidoreductase AL549_RS01135 PF00155 Aminotransferase class I and II AL549_RS01135 PF00392 Bacterial regulatory proteins, gntR family AL549_RS01150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_RS01160 PF12833 Helix-turn-helix domain AL549_RS01165 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_RS01165 PF02378 Phosphotransferase system, EIIC AL549_RS01165 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_RS01170 PF01238 Phosphomannose isomerase type I AL549_RS01190 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS01190 PF18113 Rubredoxin binding C-terminal domain AL549_RS01195 PF00301 Rubredoxin AL549_RS01195 PF00258 Flavodoxin AL549_RS01195 PF00753 Metallo-beta-lactamase superfamily AL549_RS01200 PF00158 Sigma-54 interaction domain AL549_RS01200 PF01590 GAF domain AL549_RS01220 PF12833 Helix-turn-helix domain AL549_RS01225 PF07715 TonB-dependent Receptor Plug Domain AL549_RS01225 PF00593 TonB dependent receptor AL549_RS01235 PF11953 Domain of unknown function (DUF3470) AL549_RS01235 PF00037 4Fe-4S binding domain AL549_RS01240 PF00588 SpoU rRNA Methylase family AL549_RS01240 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL549_RS01255 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL549_RS01255 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL549_RS01265 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL549_RS01265 PF16353 Domain of unknown function(DUF4981) AL549_RS01265 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL549_RS01265 PF02929 Beta galactosidase small chain AL549_RS01265 PF00703 Glycosyl hydrolases family 2 AL549_RS01270 PF13407 Periplasmic binding protein domain AL549_RS01275 PF00005 ABC transporter AL549_RS01280 PF02653 Branched-chain amino acid transport system / permease component AL549_RS01285 PF00356 Bacterial regulatory proteins, lacI family AL549_RS01300 PF00873 AcrB/AcrD/AcrF family AL549_RS01305 PF03707 Bacterial signalling protein N terminal repeat AL549_RS01305 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS01305 PF00563 EAL domain AL549_RS01310 PF00849 RNA pseudouridylate synthase AL549_RS01345 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS01345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_RS01355 PF01554 MatE AL549_RS01360 PF14310 Fibronectin type III-like domain AL549_RS01360 PF00933 Glycosyl hydrolase family 3 N terminal domain AL549_RS01360 PF01915 Glycosyl hydrolase family 3 C-terminal domain AL549_RS01370 PF12833 Helix-turn-helix domain AL549_RS01375 PF02264 LamB porin AL549_RS01380 PF00722 Glycosyl hydrolases family 16 AL549_RS01390 PF00356 Bacterial regulatory proteins, lacI family AL549_RS01400 PF00005 ABC transporter AL549_RS01400 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS01405 PF00005 ABC transporter AL549_RS01405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS01410 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS01415 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS01420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_RS01430 PF00356 Bacterial regulatory proteins, lacI family AL549_RS01435 PF08402 TOBE domain AL549_RS01435 PF00005 ABC transporter AL549_RS01440 PF00232 Glycosyl hydrolase family 1 AL549_RS01445 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS01450 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS01460 PF00356 Bacterial regulatory proteins, lacI family AL549_RS01465 PF02264 LamB porin AL549_RS01480 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS01485 PF00486 Transcriptional regulatory protein, C terminal AL549_RS01485 PF00072 Response regulator receiver domain AL549_RS01490 PF08521 Two-component sensor kinase N-terminal AL549_RS01490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS01490 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS01500 PF03466 LysR substrate binding domain AL549_RS01500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01510 PF05193 Peptidase M16 inactive domain AL549_RS01510 PF00675 Insulinase (Peptidase family M16) AL549_RS01515 PF02690 Na+/Pi-cotransporter AL549_RS01520 PF01966 HD domain AL549_RS01525 PF02798 Glutathione S-transferase, N-terminal domain AL549_RS01530 PF00171 Aldehyde dehydrogenase family AL549_RS01545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS01545 PF00672 HAMP domain AL549_RS01545 PF02743 Cache domain AL549_RS01565 PF01470 Pyroglutamyl peptidase AL549_RS01575 PF01037 Lrp/AsnC ligand binding domain AL549_RS01580 PF01810 LysE type translocator AL549_RS01585 PF18693 TRAM domain AL549_RS01585 PF04055 Radical SAM superfamily AL549_RS01585 PF00919 Uncharacterized protein family UPF0004 AL549_RS01590 PF00672 HAMP domain AL549_RS01590 PF16591 Helical bimodular sensor domain AL549_RS01590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS01595 PF00128 Alpha amylase, catalytic domain AL549_RS01595 PF02806 Alpha amylase, C-terminal all-beta domain AL549_RS01595 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL549_RS01600 PF02446 4-alpha-glucanotransferase AL549_RS01605 PF00343 Carbohydrate phosphorylase AL549_RS01610 PF17874 MalT-like TPR region AL549_RS01610 PF00196 Bacterial regulatory proteins, luxR family AL549_RS01625 PF02630 SCO1/SenC AL549_RS01630 PF04314 Copper chaperone PCu(A)C AL549_RS01635 PF03193 RsgA GTPase AL549_RS01640 PF00375 Sodium:dicarboxylate symporter family AL549_RS01645 PF08543 Phosphomethylpyrimidine kinase AL549_RS01650 PF13520 Amino acid permease AL549_RS01655 PF01276 Orn/Lys/Arg decarboxylase, major domain AL549_RS01655 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL549_RS01655 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL549_RS01670 PF11852 Domain of unknown function (DUF3372) AL549_RS01670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL549_RS01670 PF03714 Bacterial pullanase-associated domain AL549_RS01670 PF17967 Pullulanase N2 domain AL549_RS01670 PF18494 Pullulanase Ins domain AL549_RS01680 PF16657 Maltogenic Amylase, C-terminal domain AL549_RS01680 PF02903 Alpha amylase, N-terminal ig-like domain AL549_RS01680 PF00128 Alpha amylase, catalytic domain AL549_RS01685 PF01547 Bacterial extracellular solute-binding protein AL549_RS01695 PF07148 Maltose operon periplasmic protein precursor (MalM) AL549_RS01700 PF02264 LamB porin AL549_RS01705 PF00128 Alpha amylase, catalytic domain AL549_RS01705 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL549_RS01710 PF17158 Membrane-associated sensor, integral membrane domain AL549_RS01710 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS01715 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS01715 PF00563 EAL domain AL549_RS01725 PF02678 Pirin AL549_RS01725 PF05726 Pirin C-terminal cupin domain AL549_RS01730 PF06865 Pyrimidine/purine nucleoside phosphorylase AL549_RS01740 PF00704 Glycosyl hydrolases family 18 AL549_RS01740 PF08329 Chitinase A, N-terminal domain AL549_RS01750 PF08361 MAATS-type transcriptional repressor, C-terminal region AL549_RS01750 PF00440 Bacterial regulatory proteins, tetR family AL549_RS01760 PF03600 Citrate transporter AL549_RS01775 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AL549_RS01780 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL549_RS01780 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL549_RS01785 PF06029 AlkA N-terminal domain AL549_RS01785 PF00730 HhH-GPD superfamily base excision DNA repair protein AL549_RS01795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01795 PF03466 LysR substrate binding domain AL549_RS01805 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL549_RS01805 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL549_RS01820 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL549_RS01830 PF03616 Sodium/glutamate symporter AL549_RS01835 PF03616 Sodium/glutamate symporter AL549_RS01850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS01850 PF00672 HAMP domain AL549_RS01850 PF17200 Single Cache domain 2 AL549_RS01855 PF04397 LytTr DNA-binding domain AL549_RS01855 PF00072 Response regulator receiver domain AL549_RS01860 PF06580 Histidine kinase AL549_RS01860 PF07694 5TMR of 5TMR-LYT AL549_RS01860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS01875 PF02687 FtsX-like permease family AL549_RS01875 PF12704 MacB-like periplasmic core domain AL549_RS01880 PF00005 ABC transporter AL549_RS01890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS01890 PF03466 LysR substrate binding domain AL549_RS01900 PF01709 Transcriptional regulator AL549_RS01910 PF01627 Hpt domain AL549_RS01910 PF17149 Periplasmic sensor domain found in signal transduction proteins AL549_RS01910 PF00672 HAMP domain AL549_RS01910 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS01910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS01910 PF00072 Response regulator receiver domain AL549_RS01920 PF01609 Transposase DDE domain AL549_RS01920 PF13006 Insertion element 4 transposase N-terminal AL549_RS01925 PF08719 Domain of unknown function (DUF1768) AL549_RS01925 PF00925 GTP cyclohydrolase II AL549_RS01935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS01935 PF00005 ABC transporter AL549_RS01940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS01940 PF00005 ABC transporter AL549_RS01955 PF13614 AAA domain AL549_RS01955 PF18607 ParA helix turn helix domain AL549_RS01960 PF02195 ParB-like nuclease domain AL549_RS01960 PF08775 ParB family AL549_RS01965 PF05127 Helicase AL549_RS01965 PF13718 GNAT acetyltransferase 2 AL549_RS01975 PF00072 Response regulator receiver domain AL549_RS01980 PF01627 Hpt domain AL549_RS01980 PF02895 Signal transducing histidine kinase, homodimeric domain AL549_RS01980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS01980 PF09078 CheY binding AL549_RS01980 PF01584 CheW-like domain AL549_RS01985 PF01584 CheW-like domain AL549_RS01990 PF01584 CheW-like domain AL549_RS01995 PF02203 Tar ligand binding domain homologue AL549_RS01995 PF00672 HAMP domain AL549_RS01995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS02000 PF01739 CheR methyltransferase, SAM binding domain AL549_RS02000 PF03705 CheR methyltransferase, all-alpha domain AL549_RS02005 PF03975 CheD chemotactic sensory transduction AL549_RS02010 PF00072 Response regulator receiver domain AL549_RS02010 PF01339 CheB methylesterase AL549_RS02015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS02015 PF00672 HAMP domain AL549_RS02015 PF02203 Tar ligand binding domain homologue AL549_RS02025 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS02025 PF00072 Response regulator receiver domain AL549_RS02045 PF02223 Thymidylate kinase AL549_RS02060 PF17848 Acetyl-coA carboxylase zinc finger domain AL549_RS02060 PF01039 Carboxyl transferase domain AL549_RS02065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02065 PF03466 LysR substrate binding domain AL549_RS02070 PF04151 Bacterial pre-peptidase C-terminal domain AL549_RS02070 PF01752 Collagenase AL549_RS02070 PF08453 Peptidase family M9 N-terminal AL549_RS02075 PF00300 Histidine phosphatase superfamily (branch 1) AL549_RS02080 PF00989 PAS fold AL549_RS02080 PF01590 GAF domain AL549_RS02080 PF00563 EAL domain AL549_RS02080 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS02090 PF00367 phosphotransferase system, EIIB AL549_RS02090 PF02378 Phosphotransferase system, EIIC AL549_RS02095 PF13580 SIS domain AL549_RS02105 PF01380 SIS domain AL549_RS02105 PF01418 Helix-turn-helix domain, rpiR family AL549_RS02110 PF01029 NusB family AL549_RS02110 PF01189 16S rRNA methyltransferase RsmB/F AL549_RS02120 PF12464 Maltose acetyltransferase AL549_RS02120 PF14602 Hexapeptide repeat of succinyl-transferase AL549_RS02125 PF00166 Chaperonin 10 Kd subunit AL549_RS02130 PF00118 TCP-1/cpn60 chaperonin family AL549_RS02145 PF00664 ABC transporter transmembrane region AL549_RS02145 PF03412 Peptidase C39 family AL549_RS02145 PF00005 ABC transporter AL549_RS02160 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS02165 PF02954 Bacterial regulatory protein, Fis family AL549_RS02165 PF00158 Sigma-54 interaction domain AL549_RS02165 PF00072 Response regulator receiver domain AL549_RS02170 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS02170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS02170 PF02743 Cache domain AL549_RS02175 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL549_RS02175 PF01243 Pyridoxamine 5'-phosphate oxidase AL549_RS02185 PF12833 Helix-turn-helix domain AL549_RS02190 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL549_RS02190 PF00171 Aldehyde dehydrogenase family AL549_RS02190 PF01619 Proline dehydrogenase AL549_RS02190 PF14850 DNA-binding domain of Proline dehydrogenase AL549_RS02200 PF00474 Sodium:solute symporter family AL549_RS02210 PF01037 Lrp/AsnC ligand binding domain AL549_RS02220 PF02278 Polysaccharide lyase family 8, super-sandwich domain AL549_RS02220 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain AL549_RS02220 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AL549_RS02225 PF00884 Sulfatase AL549_RS02225 PF16385 Domain of unknown function AL549_RS02230 PF00884 Sulfatase AL549_RS02235 PF13186 Iron-sulfur cluster-binding domain AL549_RS02235 PF04055 Radical SAM superfamily AL549_RS02240 PF16347 Domain of unknown function (DUF4976) AL549_RS02250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_RS02260 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS02265 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_RS02265 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS02270 PF00005 ABC transporter AL549_RS02270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS02275 PF00672 HAMP domain AL549_RS02275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS02290 PF01740 STAS domain AL549_RS02290 PF00916 Sulfate permease family AL549_RS02295 PF16363 GDP-mannose 4,6 dehydratase AL549_RS02300 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL549_RS02300 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL549_RS02310 PF07470 Glycosyl Hydrolase Family 88 AL549_RS02315 PF09508 Lacto-N-biose phosphorylase N-terminal TIM barrel domain AL549_RS02315 PF17386 Lacto-N-biose phosphorylase C-terminal domain AL549_RS02315 PF17385 Lacto-N-biose phosphorylase central domain AL549_RS02320 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain AL549_RS02320 PF02278 Polysaccharide lyase family 8, super-sandwich domain AL549_RS02320 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain AL549_RS02325 PF00005 ABC transporter AL549_RS02325 PF00664 ABC transporter transmembrane region AL549_RS02340 PF01261 Xylose isomerase-like TIM barrel AL549_RS02345 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL549_RS02355 PF00596 Class II Aldolase and Adducin N-terminal domain AL549_RS02360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_RS02365 PF03611 PTS system sugar-specific permease component AL549_RS02370 PF08220 DeoR-like helix-turn-helix domain AL549_RS02370 PF00455 DeoR C terminal sensor domain AL549_RS02380 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL549_RS02385 PF04399 Glutaredoxin 2, C terminal domain AL549_RS02385 PF13417 Glutathione S-transferase, N-terminal domain AL549_RS02395 PF03466 LysR substrate binding domain AL549_RS02395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02400 PF10688 Bacterial inner membrane protein AL549_RS02405 PF01081 KDPG and KHG aldolase AL549_RS02410 PF00294 pfkB family carbohydrate kinase AL549_RS02415 PF02614 Glucuronate isomerase AL549_RS02420 PF08125 Mannitol dehydrogenase C-terminal domain AL549_RS02420 PF01232 Mannitol dehydrogenase Rossmann domain AL549_RS02425 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL549_RS02430 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL549_RS02435 PF03480 Bacterial extracellular solute-binding protein, family 7 AL549_RS02440 PF00392 Bacterial regulatory proteins, gntR family AL549_RS02440 PF07729 FCD domain AL549_RS02445 PF03786 D-mannonate dehydratase (UxuA) AL549_RS02450 PF00270 DEAD/DEAH box helicase AL549_RS02450 PF00271 Helicase conserved C-terminal domain AL549_RS02455 PF00155 Aminotransferase class I and II AL549_RS02460 PF03553 Na+/H+ antiporter family AL549_RS02465 PF00356 Bacterial regulatory proteins, lacI family AL549_RS02470 PF00857 Isochorismatase family AL549_RS02475 PF01276 Orn/Lys/Arg decarboxylase, major domain AL549_RS02475 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL549_RS02480 PF00892 EamA-like transporter family AL549_RS02490 PF03475 3-alpha domain AL549_RS02490 PF03473 MOSC domain AL549_RS02510 PF02056 Family 4 glycosyl hydrolase AL549_RS02510 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL549_RS02515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02515 PF03466 LysR substrate binding domain AL549_RS02530 PF12833 Helix-turn-helix domain AL549_RS02530 PF12852 Cupin AL549_RS02535 PF00462 Glutaredoxin AL549_RS02550 PF00672 HAMP domain AL549_RS02550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS02570 PF01625 Peptide methionine sulfoxide reductase AL549_RS02575 PF01641 SelR domain AL549_RS02600 PF00753 Metallo-beta-lactamase superfamily AL549_RS02600 PF14863 Alkyl sulfatase dimerisation AL549_RS02600 PF14864 Alkyl sulfatase C-terminal AL549_RS02605 PF03466 LysR substrate binding domain AL549_RS02605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02610 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL549_RS02610 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL549_RS02615 PF12833 Helix-turn-helix domain AL549_RS02620 PF00892 EamA-like transporter family AL549_RS02625 PF08220 DeoR-like helix-turn-helix domain AL549_RS02625 PF00455 DeoR C terminal sensor domain AL549_RS02635 PF00455 DeoR C terminal sensor domain AL549_RS02635 PF08220 DeoR-like helix-turn-helix domain AL549_RS02640 PF08013 Tagatose 6 phosphate kinase AL549_RS02645 PF01380 SIS domain AL549_RS02650 PF03830 PTS system sorbose subfamily IIB component AL549_RS02655 PF03609 PTS system sorbose-specific iic component AL549_RS02660 PF03613 PTS system mannose/fructose/sorbose family IID component AL549_RS02665 PF03610 PTS system fructose IIA component AL549_RS02670 PF01979 Amidohydrolase family AL549_RS02675 PF01116 Fructose-bisphosphate aldolase class-II AL549_RS02680 PF12848 ABC transporter AL549_RS02680 PF00005 ABC transporter AL549_RS02685 PF00593 TonB dependent receptor AL549_RS02685 PF07715 TonB-dependent Receptor Plug Domain AL549_RS02695 PF01032 FecCD transport family AL549_RS02700 PF01497 Periplasmic binding protein AL549_RS02705 PF00005 ABC transporter AL549_RS02730 PF12704 MacB-like periplasmic core domain AL549_RS02730 PF02687 FtsX-like permease family AL549_RS02730 PF00005 ABC transporter AL549_RS02735 PF02687 FtsX-like permease family AL549_RS02735 PF00005 ABC transporter AL549_RS02735 PF12704 MacB-like periplasmic core domain AL549_RS02740 PF02687 FtsX-like permease family AL549_RS02740 PF00005 ABC transporter AL549_RS02740 PF12704 MacB-like periplasmic core domain AL549_RS02745 PF14579 Helix-hairpin-helix motif AL549_RS02745 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL549_RS02745 PF11490 DNA polymerase III polC-type N-terminus II AL549_RS02745 PF00929 Exonuclease AL549_RS02745 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL549_RS02745 PF02811 PHP domain AL549_RS02765 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS02765 PF17158 Membrane-associated sensor, integral membrane domain AL549_RS02780 PF08267 Cobalamin-independent synthase, N-terminal domain AL549_RS02780 PF01717 Cobalamin-independent synthase, Catalytic domain AL549_RS02790 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS02790 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_RS02795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02795 PF03466 LysR substrate binding domain AL549_RS02800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS02800 PF00672 HAMP domain AL549_RS02800 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS02805 PF00486 Transcriptional regulatory protein, C terminal AL549_RS02805 PF00072 Response regulator receiver domain AL549_RS02815 PF14864 Alkyl sulfatase C-terminal AL549_RS02815 PF14863 Alkyl sulfatase dimerisation AL549_RS02815 PF00753 Metallo-beta-lactamase superfamily AL549_RS02825 PF02743 Cache domain AL549_RS02825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS02825 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS02830 PF00072 Response regulator receiver domain AL549_RS02830 PF00158 Sigma-54 interaction domain AL549_RS02830 PF02954 Bacterial regulatory protein, Fis family AL549_RS02845 PF01266 FAD dependent oxidoreductase AL549_RS02855 PF00072 Response regulator receiver domain AL549_RS02860 PF00072 Response regulator receiver domain AL549_RS02860 PF00672 HAMP domain AL549_RS02860 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_RS02860 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS02860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS02860 PF01627 Hpt domain AL549_RS02865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS02865 PF00672 HAMP domain AL549_RS02865 PF12729 Four helix bundle sensory module for signal transduction AL549_RS02875 PF13599 Pentapeptide repeats (9 copies) AL549_RS02885 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_RS02885 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_RS02890 PF04151 Bacterial pre-peptidase C-terminal domain AL549_RS02890 PF03413 Peptidase propeptide and YPEB domain AL549_RS02890 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL549_RS02890 PF01447 Thermolysin metallopeptidase, catalytic domain AL549_RS02890 PF07504 Fungalysin/Thermolysin Propeptide Motif AL549_RS02920 PF00271 Helicase conserved C-terminal domain AL549_RS02920 PF00270 DEAD/DEAH box helicase AL549_RS02925 PF00561 alpha/beta hydrolase fold AL549_RS02930 PF00881 Nitroreductase family AL549_RS02940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS02940 PF03466 LysR substrate binding domain AL549_RS02950 PF00175 Oxidoreductase NAD-binding domain AL549_RS02950 PF00970 Oxidoreductase FAD-binding domain AL549_RS02955 PF00892 EamA-like transporter family AL549_RS02960 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL549_RS02980 PF07690 Major Facilitator Superfamily AL549_RS02985 PF02311 AraC-like ligand binding domain AL549_RS02985 PF12833 Helix-turn-helix domain AL549_RS03000 PF03466 LysR substrate binding domain AL549_RS03000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS03005 PF07519 Tannase and feruloyl esterase AL549_RS03015 PF06942 GlpM protein AL549_RS03020 PF00034 Cytochrome c AL549_RS03020 PF03150 Di-haem cytochrome c peroxidase AL549_RS03030 PF02001 Protein of unknown function DUF134 AL549_RS03045 PF03144 Elongation factor Tu domain 2 AL549_RS03045 PF03764 Elongation factor G, domain IV AL549_RS03045 PF00679 Elongation factor G C-terminus AL549_RS03045 PF14492 Elongation Factor G, domain II AL549_RS03045 PF00009 Elongation factor Tu GTP binding domain AL549_RS03055 PF00583 Acetyltransferase (GNAT) family AL549_RS03060 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS03060 PF17151 Periplasmic sensor domain AL549_RS03075 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS03075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS03075 PF00672 HAMP domain AL549_RS03080 PF00486 Transcriptional regulatory protein, C terminal AL549_RS03080 PF00072 Response regulator receiver domain AL549_RS03085 PF02378 Phosphotransferase system, EIIC AL549_RS03085 PF00367 phosphotransferase system, EIIB AL549_RS03095 PF09278 MerR, DNA binding AL549_RS03095 PF00376 MerR family regulatory protein AL549_RS03100 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AL549_RS03105 PF12833 Helix-turn-helix domain AL549_RS03110 PF01161 Phosphatidylethanolamine-binding protein AL549_RS03115 PF00293 NUDIX domain AL549_RS03120 PF00072 Response regulator receiver domain AL549_RS03120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS03120 PF00672 HAMP domain AL549_RS03120 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_RS03120 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS03120 PF01627 Hpt domain AL549_RS03135 PF13533 Biotin-lipoyl like AL549_RS03140 PF00873 AcrB/AcrD/AcrF family AL549_RS03150 PF00924 Mechanosensitive ion channel AL549_RS03170 PF00583 Acetyltransferase (GNAT) family AL549_RS03170 PF00795 Carbon-nitrogen hydrolase AL549_RS03195 PF01614 Bacterial transcriptional regulator AL549_RS03195 PF09339 IclR helix-turn-helix domain AL549_RS03205 PF10688 Bacterial inner membrane protein AL549_RS03210 PF07883 Cupin domain AL549_RS03230 PF00892 EamA-like transporter family AL549_RS03235 PF00294 pfkB family carbohydrate kinase AL549_RS03240 PF01081 KDPG and KHG aldolase AL549_RS03250 PF06917 Periplasmic pectate lyase AL549_RS03265 PF13229 Right handed beta helix region AL549_RS03270 PF00474 Sodium:solute symporter family AL549_RS03275 PF14583 Oligogalacturonate lyase AL549_RS03280 PF00128 Alpha amylase, catalytic domain AL549_RS03290 PF07670 Nucleoside recognition AL549_RS03295 PF07670 Nucleoside recognition AL549_RS03300 PF01546 Peptidase family M20/M25/M40 AL549_RS03300 PF07687 Peptidase dimerisation domain AL549_RS03335 PF01022 Bacterial regulatory protein, arsR family AL549_RS03340 PF01758 Sodium Bile acid symporter family AL549_RS03360 PF08019 Phosphoethanolamine transferase EptA/EptB AL549_RS03360 PF00884 Sulfatase AL549_RS03365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS03365 PF03466 LysR substrate binding domain AL549_RS03375 PF14864 Alkyl sulfatase C-terminal AL549_RS03375 PF00753 Metallo-beta-lactamase superfamily AL549_RS03375 PF14863 Alkyl sulfatase dimerisation AL549_RS03385 PF13533 Biotin-lipoyl like AL549_RS03395 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL549_RS03400 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL549_RS03400 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL549_RS03405 PF00579 tRNA synthetases class I (W and Y) AL549_RS03405 PF01479 S4 domain AL549_RS03410 PF00196 Bacterial regulatory proteins, luxR family AL549_RS03410 PF00072 Response regulator receiver domain AL549_RS03415 PF02567 Phenazine biosynthesis-like protein AL549_RS03420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS03420 PF03466 LysR substrate binding domain AL549_RS03425 PF13417 Glutathione S-transferase, N-terminal domain AL549_RS03425 PF00043 Glutathione S-transferase, C-terminal domain AL549_RS03430 PF13407 Periplasmic binding protein domain AL549_RS03435 PF03707 Bacterial signalling protein N terminal repeat AL549_RS03435 PF00563 EAL domain AL549_RS03435 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS03440 PF02954 Bacterial regulatory protein, Fis family AL549_RS03440 PF01590 GAF domain AL549_RS03440 PF00158 Sigma-54 interaction domain AL549_RS03445 PF00171 Aldehyde dehydrogenase family AL549_RS03455 PF00571 CBS domain AL549_RS03455 PF03471 Transporter associated domain AL549_RS03455 PF01595 Cyclin M transmembrane N-terminal domain AL549_RS03460 PF12561 ToxR activated gene A lipoprotein domain AL549_RS03460 PF00041 Fibronectin type III domain AL549_RS03465 PF01327 Polypeptide deformylase AL549_RS03470 PF03611 PTS system sugar-specific permease component AL549_RS03480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_RS03485 PF00356 Bacterial regulatory proteins, lacI family AL549_RS03490 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_RS03490 PF00175 Oxidoreductase NAD-binding domain AL549_RS03490 PF00970 Oxidoreductase FAD-binding domain AL549_RS03505 PF00005 ABC transporter AL549_RS03505 PF12848 ABC transporter AL549_RS03505 PF16326 ABC transporter C-terminal domain AL549_RS03510 PF03222 Tryptophan/tyrosine permease family AL549_RS03515 PF01212 Beta-eliminating lyase AL549_RS03530 PF00873 AcrB/AcrD/AcrF family AL549_RS03535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_RS03550 PF00753 Metallo-beta-lactamase superfamily AL549_RS03555 PF18030 RimK PreATP-grasp domain AL549_RS03555 PF08443 RimK-like ATP-grasp domain AL549_RS03560 PF18030 RimK PreATP-grasp domain AL549_RS03560 PF08443 RimK-like ATP-grasp domain AL549_RS03570 PF00501 AMP-binding enzyme AL549_RS03570 PF13193 AMP-binding enzyme C-terminal domain AL549_RS03570 PF00668 Condensation domain AL549_RS03570 PF00550 Phosphopantetheine attachment site AL549_RS03570 PF00975 Thioesterase domain AL549_RS03575 PF07715 TonB-dependent Receptor Plug Domain AL549_RS03580 PF01497 Periplasmic binding protein AL549_RS03590 PF13193 AMP-binding enzyme C-terminal domain AL549_RS03590 PF00501 AMP-binding enzyme AL549_RS03600 PF00550 Phosphopantetheine attachment site AL549_RS03600 PF00857 Isochorismatase family AL549_RS03605 PF08021 Siderophore-interacting FAD-binding domain AL549_RS03605 PF04954 Siderophore-interacting protein AL549_RS03610 PF00501 AMP-binding enzyme AL549_RS03610 PF13193 AMP-binding enzyme C-terminal domain AL549_RS03615 PF00425 chorismate binding enzyme AL549_RS03625 PF00793 DAHP synthetase I family AL549_RS03630 PF00550 Phosphopantetheine attachment site AL549_RS03630 PF00668 Condensation domain AL549_RS03630 PF13193 AMP-binding enzyme C-terminal domain AL549_RS03630 PF00975 Thioesterase domain AL549_RS03630 PF00501 AMP-binding enzyme AL549_RS03635 PF07993 Male sterility protein AL549_RS03635 PF00550 Phosphopantetheine attachment site AL549_RS03635 PF00501 AMP-binding enzyme AL549_RS03635 PF13193 AMP-binding enzyme C-terminal domain AL549_RS03635 PF00668 Condensation domain AL549_RS03640 PF01648 4'-phosphopantetheinyl transferase superfamily AL549_RS03640 PF17837 4'-phosphopantetheinyl transferase N-terminal domain AL549_RS03655 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_RS03660 PF00672 HAMP domain AL549_RS03660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS03660 PF12729 Four helix bundle sensory module for signal transduction AL549_RS03670 PF17996 Carbohydrate esterase 2 N-terminal AL549_RS03670 PF13472 GDSL-like Lipase/Acylhydrolase family AL549_RS03675 PF08448 PAS fold AL549_RS03675 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS03675 PF00563 EAL domain AL549_RS03690 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS03695 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS03700 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_RS03705 PF00005 ABC transporter AL549_RS03710 PF17185 NlpE C-terminal OB domain AL549_RS03710 PF04170 NlpE N-terminal domain AL549_RS03725 PF02378 Phosphotransferase system, EIIC AL549_RS03765 PF07690 Major Facilitator Superfamily AL549_RS03785 PF02589 LUD domain AL549_RS03790 PF02589 LUD domain AL549_RS03790 PF13183 4Fe-4S dicluster domain AL549_RS03790 PF11870 Domain of unknown function (DUF3390) AL549_RS03795 PF02754 Cysteine-rich domain AL549_RS03800 PF02652 L-lactate permease AL549_RS03805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS03805 PF03466 LysR substrate binding domain AL549_RS03810 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AL549_RS03810 PF00326 Prolyl oligopeptidase family AL549_RS03815 PF00005 ABC transporter AL549_RS03815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS03825 PF05362 Lon protease (S16) C-terminal proteolytic domain AL549_RS03825 PF13654 AAA domain AL549_RS03830 PF07969 Amidohydrolase family AL549_RS03835 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AL549_RS03840 PF12833 Helix-turn-helix domain AL549_RS03845 PF00571 CBS domain AL549_RS03845 PF01769 Divalent cation transporter AL549_RS03845 PF03448 MgtE intracellular N domain AL549_RS03870 PF00486 Transcriptional regulatory protein, C terminal AL549_RS03870 PF00072 Response regulator receiver domain AL549_RS03875 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS03875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS03875 PF00672 HAMP domain AL549_RS03875 PF16527 Two-component sensor protein CpxA, periplasmic domain AL549_RS03885 PF00155 Aminotransferase class I and II AL549_RS03885 PF00392 Bacterial regulatory proteins, gntR family AL549_RS03890 PF13230 Glutamine amidotransferases class-II AL549_RS03895 PF13520 Amino acid permease AL549_RS03905 PF01037 Lrp/AsnC ligand binding domain AL549_RS03910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS03910 PF03466 LysR substrate binding domain AL549_RS03920 PF08534 Redoxin AL549_RS03920 PF00462 Glutaredoxin AL549_RS03925 PF00709 Adenylosuccinate synthetase AL549_RS03930 PF03466 LysR substrate binding domain AL549_RS03930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS03940 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_RS03940 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL549_RS03955 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS03955 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_RS03955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS03955 PF01627 Hpt domain AL549_RS03955 PF00072 Response regulator receiver domain AL549_RS03955 PF00672 HAMP domain AL549_RS03960 PF01554 MatE AL549_RS03965 PF04363 Protein of unknown function (DUF496) AL549_RS03975 PF04337 Protein of unknown function, DUF480 AL549_RS03980 PF01541 GIY-YIG catalytic domain AL549_RS03990 PF13407 Periplasmic binding protein domain AL549_RS03995 PF00072 Response regulator receiver domain AL549_RS03995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS03995 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS03995 PF09308 LuxQ, periplasmic AL549_RS04010 PF01037 Lrp/AsnC ligand binding domain AL549_RS04040 PF13721 SecD export protein N-terminal TM region AL549_RS04040 PF07549 SecD/SecF GG Motif AL549_RS04040 PF02355 Protein export membrane protein AL549_RS04045 PF07549 SecD/SecF GG Motif AL549_RS04045 PF02355 Protein export membrane protein AL549_RS04050 PF00106 short chain dehydrogenase AL549_RS04055 PF02803 Thiolase, C-terminal domain AL549_RS04055 PF00108 Thiolase, N-terminal domain AL549_RS04065 PF00561 alpha/beta hydrolase fold AL549_RS04065 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL549_RS04075 PF01979 Amidohydrolase family AL549_RS04080 PF00480 ROK family AL549_RS04085 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase AL549_RS04090 PF03480 Bacterial extracellular solute-binding protein, family 7 AL549_RS04095 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL549_RS04100 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL549_RS04105 PF00701 Dihydrodipicolinate synthetase family AL549_RS04110 PF01380 SIS domain AL549_RS04110 PF01418 Helix-turn-helix domain, rpiR family AL549_RS04115 PF01344 Kelch motif AL549_RS04120 PF07646 Kelch motif AL549_RS04130 PF03264 NapC/NirT cytochrome c family, N-terminal region AL549_RS04135 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AL549_RS04140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS04140 PF00384 Molybdopterin oxidoreductase AL549_RS04140 PF01568 Molydopterin dinucleotide binding domain AL549_RS04150 PF13187 4Fe-4S dicluster domain AL549_RS04150 PF12838 4Fe-4S dicluster domain AL549_RS04155 PF07730 Histidine kinase AL549_RS04155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS04155 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AL549_RS04155 PF00672 HAMP domain AL549_RS04160 PF00072 Response regulator receiver domain AL549_RS04160 PF00196 Bacterial regulatory proteins, luxR family AL549_RS04180 PF03853 YjeF-related protein N-terminus AL549_RS04180 PF01256 Carbohydrate kinase AL549_RS04190 PF00478 IMP dehydrogenase / GMP reductase domain AL549_RS04230 PF13333 Integrase core domain AL549_RS04230 PF13276 HTH-like domain AL549_RS04230 PF00665 Integrase core domain AL549_RS04240 PF14760 Rnk N-terminus AL549_RS04240 PF01272 Transcription elongation factor, GreA/GreB, C-term AL549_RS04245 PF00583 Acetyltransferase (GNAT) family AL549_RS04255 PF03372 Endonuclease/Exonuclease/phosphatase family AL549_RS04270 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS04280 PF00270 DEAD/DEAH box helicase AL549_RS04280 PF00271 Helicase conserved C-terminal domain AL549_RS04295 PF01047 MarR family AL549_RS04310 PF12706 Beta-lactamase superfamily domain AL549_RS04320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL549_RS04330 PF00005 ABC transporter AL549_RS04340 PF01380 SIS domain AL549_RS04340 PF02685 Glucokinase AL549_RS04340 PF01418 Helix-turn-helix domain, rpiR family AL549_RS04350 PF07969 Amidohydrolase family AL549_RS04360 PF00474 Sodium:solute symporter family AL549_RS04365 PF00728 Glycosyl hydrolase family 20, catalytic domain AL549_RS04365 PF02838 Glycosyl hydrolase family 20, domain 2 AL549_RS04375 PF01042 Endoribonuclease L-PSP AL549_RS04380 PF00360 Phytochrome region AL549_RS04380 PF00563 EAL domain AL549_RS04380 PF01590 GAF domain AL549_RS04380 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS04385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS04385 PF03466 LysR substrate binding domain AL549_RS04390 PF07690 Major Facilitator Superfamily AL549_RS04400 PF00462 Glutaredoxin AL549_RS04405 PF00892 EamA-like transporter family AL549_RS04410 PF03707 Bacterial signalling protein N terminal repeat AL549_RS04410 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS04410 PF00563 EAL domain AL549_RS04420 PF00578 AhpC/TSA family AL549_RS04430 PF02566 OsmC-like protein AL549_RS04435 PF01047 MarR family AL549_RS04440 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL549_RS04460 PF01810 LysE type translocator AL549_RS04470 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL549_RS04470 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL549_RS04470 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL549_RS04470 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL549_RS04475 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL549_RS04475 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL549_RS04480 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL549_RS04485 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AL549_RS04490 PF00510 Cytochrome c oxidase subunit III AL549_RS04510 PF02628 Cytochrome oxidase assembly protein AL549_RS04515 PF01040 UbiA prenyltransferase family AL549_RS04520 PF00691 OmpA family AL549_RS04520 PF13488 Glycine zipper AL549_RS04525 PF00793 DAHP synthetase I family AL549_RS04530 PF08447 PAS fold AL549_RS04530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS04535 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS04535 PF03707 Bacterial signalling protein N terminal repeat AL549_RS04535 PF00563 EAL domain AL549_RS04545 PF02780 Transketolase, C-terminal domain AL549_RS04545 PF00456 Transketolase, thiamine diphosphate binding domain AL549_RS04545 PF02779 Transketolase, pyrimidine binding domain AL549_RS04550 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL549_RS04560 PF08329 Chitinase A, N-terminal domain AL549_RS04560 PF00704 Glycosyl hydrolases family 18 AL549_RS04565 PF03707 Bacterial signalling protein N terminal repeat AL549_RS04565 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS04565 PF00563 EAL domain AL549_RS04570 PF00581 Rhodanese-like domain AL549_RS04580 PF00899 ThiF family AL549_RS04585 PF00994 Probable molybdopterin binding domain AL549_RS04585 PF03453 MoeA N-terminal region (domain I and II) AL549_RS04585 PF03454 MoeA C-terminal region (domain IV) AL549_RS04590 PF01227 GTP cyclohydrolase I AL549_RS04595 PF01566 Natural resistance-associated macrophage protein AL549_RS04605 PF00654 Voltage gated chloride channel AL549_RS04630 PF00248 Aldo/keto reductase family AL549_RS04640 PF07687 Peptidase dimerisation domain AL549_RS04640 PF01546 Peptidase family M20/M25/M40 AL549_RS04645 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL549_RS04650 PF13533 Biotin-lipoyl like AL549_RS04655 PF00873 AcrB/AcrD/AcrF family AL549_RS04660 PF00672 HAMP domain AL549_RS04660 PF12729 Four helix bundle sensory module for signal transduction AL549_RS04660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS04665 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS04670 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL549_RS04670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_RS04700 PF00313 'Cold-shock' DNA-binding domain AL549_RS04705 PF03889 Alternative ribosome-rescue factor A AL549_RS04715 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS04725 PF01238 Phosphomannose isomerase type I AL549_RS04730 PF07690 Major Facilitator Superfamily AL549_RS04735 PF07730 Histidine kinase AL549_RS04735 PF05231 MASE1 AL549_RS04735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS04740 PF00196 Bacterial regulatory proteins, luxR family AL549_RS04740 PF00072 Response regulator receiver domain AL549_RS04745 PF07690 Major Facilitator Superfamily AL549_RS04760 PF16884 N-terminal domain of oxidoreductase AL549_RS04760 PF00107 Zinc-binding dehydrogenase AL549_RS04765 PF00440 Bacterial regulatory proteins, tetR family AL549_RS04765 PF16925 Tetracyclin repressor-like, C-terminal domain AL549_RS04770 PF01699 Sodium/calcium exchanger protein AL549_RS04780 PF00313 'Cold-shock' DNA-binding domain AL549_RS04785 PF13192 Thioredoxin domain AL549_RS04785 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS04790 PF00578 AhpC/TSA family AL549_RS04790 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL549_RS04795 PF00682 HMGL-like AL549_RS04800 PF00378 Enoyl-CoA hydratase/isomerase AL549_RS04805 PF01039 Carboxyl transferase domain AL549_RS04810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL549_RS04810 PF02770 Acyl-CoA dehydrogenase, middle domain AL549_RS04810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL549_RS04815 PF00376 MerR family regulatory protein AL549_RS04815 PF09278 MerR, DNA binding AL549_RS04820 PF02803 Thiolase, C-terminal domain AL549_RS04820 PF00108 Thiolase, N-terminal domain AL549_RS04825 PF00171 Aldehyde dehydrogenase family AL549_RS04830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL549_RS04830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL549_RS04830 PF02770 Acyl-CoA dehydrogenase, middle domain AL549_RS04835 PF00378 Enoyl-CoA hydratase/isomerase AL549_RS04840 PF00378 Enoyl-CoA hydratase/isomerase AL549_RS04845 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL549_RS04845 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL549_RS04870 PF00664 ABC transporter transmembrane region AL549_RS04870 PF00005 ABC transporter AL549_RS04870 PF03412 Peptidase C39 family AL549_RS04880 PF00664 ABC transporter transmembrane region AL549_RS04880 PF03412 Peptidase C39 family AL549_RS04880 PF00005 ABC transporter AL549_RS04890 PF02794 RTX toxin acyltransferase family AL549_RS04895 PF07634 RtxA repeat AL549_RS04895 PF11647 Membrane Localization Domain AL549_RS04895 PF11713 Peptidase C80 family AL549_RS04895 PF16671 Actin cross-linking domain AL549_RS04895 PF12146 Serine aminopeptidase, S33 AL549_RS04900 PF00842 Alanine racemase, C-terminal domain AL549_RS04900 PF01168 Alanine racemase, N-terminal domain AL549_RS04905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS04905 PF00672 HAMP domain AL549_RS04915 PF01012 Electron transfer flavoprotein domain AL549_RS04920 PF00766 Electron transfer flavoprotein FAD-binding domain AL549_RS04920 PF01012 Electron transfer flavoprotein domain AL549_RS04925 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL549_RS04925 PF00364 Biotin-requiring enzyme AL549_RS04925 PF02817 e3 binding domain AL549_RS04930 PF02779 Transketolase, pyrimidine binding domain AL549_RS04930 PF02780 Transketolase, C-terminal domain AL549_RS04935 PF00676 Dehydrogenase E1 component AL549_RS04940 PF00962 Adenosine/AMP deaminase AL549_RS04950 PF11849 Domain of unknown function (DUF3369) AL549_RS04955 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_RS04955 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS04955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS04970 PF00892 EamA-like transporter family AL549_RS04980 PF03466 LysR substrate binding domain AL549_RS04980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS04990 PF00501 AMP-binding enzyme AL549_RS04990 PF13193 AMP-binding enzyme C-terminal domain AL549_RS04995 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AL549_RS05000 PF01329 Pterin 4 alpha carbinolamine dehydratase AL549_RS05005 PF03707 Bacterial signalling protein N terminal repeat AL549_RS05005 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05005 PF00563 EAL domain AL549_RS05020 PF12843 Putative quorum-sensing-regulated virulence factor AL549_RS05040 PF00069 Protein kinase domain AL549_RS05040 PF03793 PASTA domain AL549_RS05055 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AL549_RS05060 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL549_RS05060 PF00691 OmpA family AL549_RS05065 PF06761 Intracellular multiplication and human macrophage-killing AL549_RS05065 PF14331 ImcF-related N-terminal domain AL549_RS05065 PF06744 Type VI secretion protein IcmF C-terminal AL549_RS05085 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AL549_RS05090 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AL549_RS05095 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AL549_RS05100 PF07024 ImpE protein AL549_RS05110 PF05947 Type VI secretion system, TssF AL549_RS05120 PF07724 AAA domain (Cdc48 subfamily) AL549_RS05120 PF00004 ATPase family associated with various cellular activities (AAA) AL549_RS05120 PF10431 C-terminal, D2-small domain, of ClpB protein AL549_RS05120 PF17871 AAA lid domain AL549_RS05130 PF06715 Gp5 C-terminal repeat (3 copies) AL549_RS05130 PF04717 Type VI secretion system, phage-baseplate injector AL549_RS05145 PF05593 RHS Repeat AL549_RS05145 PF03527 RHS protein AL549_RS05160 PF04634 Protein of unknown function, DUF600 AL549_RS05205 PF01435 Peptidase family M48 AL549_RS05210 PF04011 LemA family AL549_RS05215 PF03606 C4-dicarboxylate anaerobic carrier AL549_RS05220 PF08334 Type II secretion system (T2SS), protein G AL549_RS05220 PF07963 Prokaryotic N-terminal methylation motif AL549_RS05225 PF01523 Putative modulator of DNA gyrase AL549_RS05230 PF01523 Putative modulator of DNA gyrase AL549_RS05235 PF03009 Glycerophosphoryl diester phosphodiesterase family AL549_RS05240 PF07690 Major Facilitator Superfamily AL549_RS05245 PF00652 Ricin-type beta-trefoil lectin domain AL549_RS05245 PF07968 Leukocidin/Hemolysin toxin family AL549_RS05255 PF00672 HAMP domain AL549_RS05255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS05260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS05260 PF00672 HAMP domain AL549_RS05265 PF00128 Alpha amylase, catalytic domain AL549_RS05270 PF00583 Acetyltransferase (GNAT) family AL549_RS05275 PF04324 BFD-like [2Fe-2S] binding domain AL549_RS05275 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS05275 PF01568 Molydopterin dinucleotide binding domain AL549_RS05275 PF00384 Molybdopterin oxidoreductase AL549_RS05280 PF14824 Sirohaem biosynthesis protein central AL549_RS05280 PF10414 Sirohaem synthase dimerisation region AL549_RS05280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_RS05285 PF00591 Glycosyl transferase family, a/b domain AL549_RS05285 PF02885 Glycosyl transferase family, helical bundle domain AL549_RS05290 PF01738 Dienelactone hydrolase family AL549_RS05295 PF03861 ANTAR domain AL549_RS05295 PF08376 Nitrate and nitrite sensing AL549_RS05300 PF00005 ABC transporter AL549_RS05305 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS05310 PF00005 ABC transporter AL549_RS05315 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS05315 PF13806 Rieske-like [2Fe-2S] domain AL549_RS05315 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL549_RS05315 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL549_RS05315 PF04324 BFD-like [2Fe-2S] binding domain AL549_RS05315 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL549_RS05330 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05340 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL549_RS05340 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL549_RS05350 PF00270 DEAD/DEAH box helicase AL549_RS05350 PF00271 Helicase conserved C-terminal domain AL549_RS05355 PF00491 Arginase family AL549_RS05365 PF00563 EAL domain AL549_RS05365 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05365 PF00360 Phytochrome region AL549_RS05365 PF01590 GAF domain AL549_RS05370 PF01339 CheB methylesterase AL549_RS05375 PF01739 CheR methyltransferase, SAM binding domain AL549_RS05375 PF03705 CheR methyltransferase, all-alpha domain AL549_RS05380 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS05380 PF01627 Hpt domain AL549_RS05380 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_RS05380 PF00072 Response regulator receiver domain AL549_RS05380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS05380 PF00672 HAMP domain AL549_RS05385 PF01575 MaoC like domain AL549_RS05405 PF00672 HAMP domain AL549_RS05405 PF17200 Single Cache domain 2 AL549_RS05405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS05410 PF04324 BFD-like [2Fe-2S] binding domain AL549_RS05410 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL549_RS05410 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS05410 PF18267 Rubredoxin NAD+ reductase C-terminal domain AL549_RS05410 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL549_RS05415 PF13806 Rieske-like [2Fe-2S] domain AL549_RS05425 PF14824 Sirohaem biosynthesis protein central AL549_RS05425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_RS05425 PF10414 Sirohaem synthase dimerisation region AL549_RS05445 PF01618 MotA/TolQ/ExbB proton channel family AL549_RS05450 PF01618 MotA/TolQ/ExbB proton channel family AL549_RS05455 PF02472 Biopolymer transport protein ExbD/TolR AL549_RS05470 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL549_RS05475 PF00672 HAMP domain AL549_RS05475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS05475 PF17200 Single Cache domain 2 AL549_RS05485 PF11756 Nitrous oxide-stimulated promoter AL549_RS05490 PF01554 MatE AL549_RS05495 PF12833 Helix-turn-helix domain AL549_RS05500 PF07690 Major Facilitator Superfamily AL549_RS05505 PF00085 Thioredoxin AL549_RS05510 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL549_RS05510 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL549_RS05525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL549_RS05525 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS05540 PF04143 Sulphur transport AL549_RS05555 PF00873 AcrB/AcrD/AcrF family AL549_RS05565 PF03477 ATP cone domain AL549_RS05565 PF13597 Anaerobic ribonucleoside-triphosphate reductase AL549_RS05575 PF00672 HAMP domain AL549_RS05575 PF12729 Four helix bundle sensory module for signal transduction AL549_RS05575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS05580 PF00155 Aminotransferase class I and II AL549_RS05585 PF18030 RimK PreATP-grasp domain AL549_RS05585 PF08443 RimK-like ATP-grasp domain AL549_RS05590 PF13006 Insertion element 4 transposase N-terminal AL549_RS05590 PF01609 Transposase DDE domain AL549_RS05605 PF07685 CobB/CobQ-like glutamine amidotransferase domain AL549_RS05605 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL549_RS05615 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS05620 PF03459 TOBE domain AL549_RS05620 PF00005 ABC transporter AL549_RS05625 PF00892 EamA-like transporter family AL549_RS05630 PF01047 MarR family AL549_RS05640 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05640 PF08448 PAS fold AL549_RS05650 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05665 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL549_RS05665 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL549_RS05665 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AL549_RS05670 PF02233 NAD(P) transhydrogenase beta subunit AL549_RS05680 PF00486 Transcriptional regulatory protein, C terminal AL549_RS05680 PF00072 Response regulator receiver domain AL549_RS05695 PF03701 Uncharacterised protein family (UPF0181) AL549_RS05705 PF01253 Translation initiation factor SUI1 AL549_RS05715 PF01820 D-ala D-ala ligase N-terminus AL549_RS05715 PF07478 D-ala D-ala ligase C-terminus AL549_RS05720 PF05036 Sporulation related domain AL549_RS05725 PF00583 Acetyltransferase (GNAT) family AL549_RS05725 PF13607 Succinyl-CoA ligase like flavodoxin domain AL549_RS05725 PF13380 CoA binding domain AL549_RS05730 PF03466 LysR substrate binding domain AL549_RS05730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS05735 PF07715 TonB-dependent Receptor Plug Domain AL549_RS05735 PF00593 TonB dependent receptor AL549_RS05740 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05740 PF08448 PAS fold AL549_RS05740 PF08447 PAS fold AL549_RS05740 PF00563 EAL domain AL549_RS05740 PF13426 PAS domain AL549_RS05740 PF05231 MASE1 AL549_RS05750 PF03746 LamB/YcsF family AL549_RS05755 PF02682 Carboxyltransferase domain, subdomain C and D AL549_RS05760 PF02626 Carboxyltransferase domain, subdomain A and B AL549_RS05765 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL549_RS05765 PF01266 FAD dependent oxidoreductase AL549_RS05775 PF00005 ABC transporter AL549_RS05780 PF13472 GDSL-like Lipase/Acylhydrolase family AL549_RS05785 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL549_RS05785 PF07055 Enoyl reductase FAD binding domain AL549_RS05785 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL549_RS05790 PF00498 FHA domain AL549_RS05790 PF00563 EAL domain AL549_RS05790 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS05805 PF00226 DnaJ domain AL549_RS05805 PF01556 DnaJ C terminal domain AL549_RS05805 PF00684 DnaJ central domain AL549_RS05825 PF03466 LysR substrate binding domain AL549_RS05825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS05830 PF00128 Alpha amylase, catalytic domain AL549_RS05830 PF16657 Maltogenic Amylase, C-terminal domain AL549_RS05840 PF12793 Sugar transport-related sRNA regulator N-term AL549_RS05840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_RS05850 PF03061 Thioesterase superfamily AL549_RS05865 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL549_RS05870 PF12262 Bacterial virulence factor lipase N-terminal AL549_RS05885 PF00491 Arginase family AL549_RS05890 PF00892 EamA-like transporter family AL549_RS05900 PF03741 Integral membrane protein TerC family AL549_RS05905 PF00149 Calcineurin-like phosphoesterase AL549_RS05905 PF02872 5'-nucleotidase, C-terminal domain AL549_RS05910 PF11398 Protein of unknown function (DUF2813) AL549_RS05915 PF06496 Protein of unknown function (DUF1097) AL549_RS05920 PF03466 LysR substrate binding domain AL549_RS05920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS05925 PF01226 Formate/nitrite transporter AL549_RS05930 PF04264 YceI-like domain AL549_RS05935 PF01292 Prokaryotic cytochrome b561 AL549_RS05950 PF00270 DEAD/DEAH box helicase AL549_RS05950 PF00271 Helicase conserved C-terminal domain AL549_RS05955 PF04336 Acyl carrier protein phosphodiesterase AL549_RS05960 PF00672 HAMP domain AL549_RS05960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS05970 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS05975 PF11849 Domain of unknown function (DUF3369) AL549_RS05990 PF00294 pfkB family carbohydrate kinase AL549_RS05995 PF01268 Formate--tetrahydrofolate ligase AL549_RS06000 PF00483 Nucleotidyl transferase AL549_RS06005 PF00704 Glycosyl hydrolases family 18 AL549_RS06005 PF06483 Chitinase C AL549_RS06010 PF06719 AraC-type transcriptional regulator N-terminus AL549_RS06010 PF12833 Helix-turn-helix domain AL549_RS06015 PF00465 Iron-containing alcohol dehydrogenase AL549_RS06020 PF02954 Bacterial regulatory protein, Fis family AL549_RS06020 PF00072 Response regulator receiver domain AL549_RS06020 PF14532 Sigma-54 interaction domain AL549_RS06025 PF02743 Cache domain AL549_RS06025 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS06025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS06035 PF07690 Major Facilitator Superfamily AL549_RS06040 PF00224 Pyruvate kinase, barrel domain AL549_RS06040 PF02887 Pyruvate kinase, alpha/beta domain AL549_RS06065 PF00356 Bacterial regulatory proteins, lacI family AL549_RS06065 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL549_RS06070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_RS06070 PF00381 PTS HPr component phosphorylation site AL549_RS06075 PF00294 pfkB family carbohydrate kinase AL549_RS06080 PF02378 Phosphotransferase system, EIIC AL549_RS06080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_RS06090 PF00873 AcrB/AcrD/AcrF family AL549_RS06115 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL549_RS06115 PF01571 Aminomethyltransferase folate-binding domain AL549_RS06125 PF00464 Serine hydroxymethyltransferase AL549_RS06130 PF01597 Glycine cleavage H-protein AL549_RS06135 PF02347 Glycine cleavage system P-protein AL549_RS06155 PF00664 ABC transporter transmembrane region AL549_RS06155 PF00005 ABC transporter AL549_RS06165 PF00795 Carbon-nitrogen hydrolase AL549_RS06190 PF13533 Biotin-lipoyl like AL549_RS06195 PF07690 Major Facilitator Superfamily AL549_RS06215 PF18081 Fanconi anemia-associated nuclease SAP domain AL549_RS06215 PF08774 VRR-NUC domain AL549_RS06225 PF04055 Radical SAM superfamily AL549_RS06225 PF13186 Iron-sulfur cluster-binding domain AL549_RS06230 PF03781 Sulfatase-modifying factor enzyme 1 AL549_RS06235 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase AL549_RS06240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS06240 PF03466 LysR substrate binding domain AL549_RS06255 PF00092 von Willebrand factor type A domain AL549_RS06270 PF17863 AAA lid domain AL549_RS06270 PF07726 ATPase family associated with various cellular activities (AAA) AL549_RS06275 PF13186 Iron-sulfur cluster-binding domain AL549_RS06275 PF04055 Radical SAM superfamily AL549_RS06280 PF00884 Sulfatase AL549_RS06285 PF03466 LysR substrate binding domain AL549_RS06285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS06290 PF00884 Sulfatase AL549_RS06295 PF00871 Acetokinase family AL549_RS06300 PF00271 Helicase conserved C-terminal domain AL549_RS06300 PF00270 DEAD/DEAH box helicase AL549_RS06300 PF03880 DbpA RNA binding domain AL549_RS06305 PF08206 Ribonuclease B OB domain AL549_RS06305 PF00575 S1 RNA binding domain AL549_RS06305 PF00773 RNB domain AL549_RS06310 PF12833 Helix-turn-helix domain AL549_RS06320 PF12849 PBP superfamily domain AL549_RS06330 PF00563 EAL domain AL549_RS06330 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS06330 PF03707 Bacterial signalling protein N terminal repeat AL549_RS06345 PF00563 EAL domain AL549_RS06345 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS06345 PF00498 FHA domain AL549_RS06350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS06350 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS06350 PF09456 RcsC Alpha-Beta-Loop (ABL) AL549_RS06350 PF00072 Response regulator receiver domain AL549_RS06355 PF00270 DEAD/DEAH box helicase AL549_RS06355 PF00271 Helicase conserved C-terminal domain AL549_RS06355 PF03880 DbpA RNA binding domain AL549_RS06360 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB AL549_RS06365 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) AL549_RS06380 PF03264 NapC/NirT cytochrome c family, N-terminal region AL549_RS06385 PF03781 Sulfatase-modifying factor enzyme 1 AL549_RS06405 PF00672 HAMP domain AL549_RS06405 PF17149 Periplasmic sensor domain found in signal transduction proteins AL549_RS06405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS06405 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS06405 PF01627 Hpt domain AL549_RS06405 PF00072 Response regulator receiver domain AL549_RS06410 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL549_RS06415 PF02142 MGS-like domain AL549_RS06420 PF12462 DNA helicase IV / RNA helicase N terminal AL549_RS06420 PF00580 UvrD/REP helicase N-terminal domain AL549_RS06420 PF13361 UvrD-like helicase C-terminal domain AL549_RS06425 PF12805 FUSC-like inner membrane protein yccS AL549_RS06455 PF13411 MerR HTH family regulatory protein AL549_RS06460 PF00005 ABC transporter AL549_RS06465 PF01032 FecCD transport family AL549_RS06470 PF01032 FecCD transport family AL549_RS06490 PF12464 Maltose acetyltransferase AL549_RS06490 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS06495 PF00072 Response regulator receiver domain AL549_RS06495 PF12431 Transcriptional regulator AL549_RS06500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS06500 PF17203 Single cache domain 3 AL549_RS06500 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL549_RS06500 PF00989 PAS fold AL549_RS06505 PF00939 Sodium:sulfate symporter transmembrane region AL549_RS06575 PF00437 Type II/IV secretion system protein AL549_RS06590 PF00263 Bacterial type II and III secretion system protein AL549_RS06590 PF04972 BON domain AL549_RS06590 PF13629 Pilus formation protein N terminal region AL549_RS06610 PF03466 LysR substrate binding domain AL549_RS06610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS06620 PF13476 AAA domain AL549_RS06625 PF12320 Type 5 capsule protein repressor C-terminal domain AL549_RS06625 PF00149 Calcineurin-like phosphoesterase AL549_RS06635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS06635 PF00672 HAMP domain AL549_RS06635 PF12729 Four helix bundle sensory module for signal transduction AL549_RS06640 PF01926 50S ribosome-binding GTPase AL549_RS06645 PF00583 Acetyltransferase (GNAT) family AL549_RS06655 PF01584 CheW-like domain AL549_RS06655 PF00072 Response regulator receiver domain AL549_RS06665 PF00356 Bacterial regulatory proteins, lacI family AL549_RS06670 PF00294 pfkB family carbohydrate kinase AL549_RS06675 PF13407 Periplasmic binding protein domain AL549_RS06680 PF02653 Branched-chain amino acid transport system / permease component AL549_RS06685 PF00005 ABC transporter AL549_RS06690 PF05025 RbsD / FucU transport protein family AL549_RS06705 PF04237 YjbR AL549_RS06710 PF05762 VWA domain containing CoxE-like protein AL549_RS06715 PF07728 AAA domain (dynein-related subfamily) AL549_RS06715 PF12592 Protein of unknown function (DUF3763) AL549_RS06715 PF17868 AAA lid domain AL549_RS06725 PF01212 Beta-eliminating lyase AL549_RS06730 PF00034 Cytochrome c AL549_RS06735 PF00171 Aldehyde dehydrogenase family AL549_RS06740 PF03606 C4-dicarboxylate anaerobic carrier AL549_RS06750 PF01569 PAP2 superfamily AL549_RS06755 PF04266 ASCH domain AL549_RS06765 PF00892 EamA-like transporter family AL549_RS06770 PF18416 N-acetylglucosamine binding protein domain 2 AL549_RS06770 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AL549_RS06780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS06780 PF00672 HAMP domain AL549_RS06780 PF02743 Cache domain AL549_RS06790 PF00149 Calcineurin-like phosphoesterase AL549_RS06795 PF03222 Tryptophan/tyrosine permease family AL549_RS06815 PF03413 Peptidase propeptide and YPEB domain AL549_RS06815 PF01447 Thermolysin metallopeptidase, catalytic domain AL549_RS06815 PF02868 Thermolysin metallopeptidase, alpha-helical domain AL549_RS06815 PF07504 Fungalysin/Thermolysin Propeptide Motif AL549_RS06820 PF13194 Domain of unknown function (DUF4010) AL549_RS06825 PF00873 AcrB/AcrD/AcrF family AL549_RS06830 PF13533 Biotin-lipoyl like AL549_RS06855 PF00581 Rhodanese-like domain AL549_RS06860 PF00012 Hsp70 protein AL549_RS06865 PF00465 Iron-containing alcohol dehydrogenase AL549_RS06875 PF07995 Glucose / Sorbosone dehydrogenase AL549_RS06880 PF02016 LD-carboxypeptidase N-terminal domain AL549_RS06880 PF17676 LD-carboxypeptidase C-terminal domain AL549_RS06895 PF13183 4Fe-4S dicluster domain AL549_RS06895 PF02754 Cysteine-rich domain AL549_RS06900 PF00890 FAD binding domain AL549_RS06905 PF04324 BFD-like [2Fe-2S] binding domain AL549_RS06905 PF01266 FAD dependent oxidoreductase AL549_RS06925 PF03618 Kinase/pyrophosphorylase AL549_RS06930 PF00391 PEP-utilising enzyme, mobile domain AL549_RS06930 PF02896 PEP-utilising enzyme, TIM barrel domain AL549_RS06930 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL549_RS06935 PF04224 Protein of unknown function, DUF417 AL549_RS06940 PF00571 CBS domain AL549_RS06940 PF00005 ABC transporter AL549_RS06945 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS06950 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AL549_RS06955 PF05199 GMC oxidoreductase AL549_RS06955 PF00732 GMC oxidoreductase AL549_RS06960 PF00171 Aldehyde dehydrogenase family AL549_RS06965 PF00440 Bacterial regulatory proteins, tetR family AL549_RS06965 PF13977 BetI-type transcriptional repressor, C-terminal AL549_RS06985 PF00768 D-alanyl-D-alanine carboxypeptidase AL549_RS06985 PF07943 Penicillin-binding protein 5, C-terminal domain AL549_RS07005 PF03315 Serine dehydratase beta chain AL549_RS07005 PF03313 Serine dehydratase alpha chain AL549_RS07010 PF00854 POT family AL549_RS07020 PF03466 LysR substrate binding domain AL549_RS07020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS07025 PF01266 FAD dependent oxidoreductase AL549_RS07035 PF07702 UTRA domain AL549_RS07035 PF00392 Bacterial regulatory proteins, gntR family AL549_RS07040 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS07045 PF00005 ABC transporter AL549_RS07060 PF00266 Aminotransferase class-V AL549_RS07065 PF00202 Aminotransferase class-III AL549_RS07070 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS07075 PF12833 Helix-turn-helix domain AL549_RS07075 PF01497 Periplasmic binding protein AL549_RS07080 PF00155 Aminotransferase class I and II AL549_RS07090 PF00672 HAMP domain AL549_RS07090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS07105 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS07110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS07110 PF03466 LysR substrate binding domain AL549_RS07125 PF14602 Hexapeptide repeat of succinyl-transferase AL549_RS07125 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS07125 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AL549_RS07130 PF02566 OsmC-like protein AL549_RS07135 PF01625 Peptide methionine sulfoxide reductase AL549_RS07135 PF01641 SelR domain AL549_RS07140 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS07155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS07155 PF12729 Four helix bundle sensory module for signal transduction AL549_RS07155 PF00672 HAMP domain AL549_RS07160 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS07160 PF00563 EAL domain AL549_RS07160 PF03707 Bacterial signalling protein N terminal repeat AL549_RS07175 PF07670 Nucleoside recognition AL549_RS07175 PF07662 Na+ dependent nucleoside transporter C-terminus AL549_RS07175 PF01773 Na+ dependent nucleoside transporter N-terminus AL549_RS07200 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL549_RS07200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL549_RS07215 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS07220 PF08525 Opacity-associated protein A N-terminal motif AL549_RS07220 PF01551 Peptidase family M23 AL549_RS07220 PF01476 LysM domain AL549_RS07240 PF07670 Nucleoside recognition AL549_RS07255 PF02743 Cache domain AL549_RS07255 PF00672 HAMP domain AL549_RS07255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS07260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS07260 PF00672 HAMP domain AL549_RS07260 PF02743 Cache domain AL549_RS07265 PF00128 Alpha amylase, catalytic domain AL549_RS07270 PF00582 Universal stress protein family AL549_RS07280 PF00072 Response regulator receiver domain AL549_RS07280 PF01584 CheW-like domain AL549_RS07290 PF01243 Pyridoxamine 5'-phosphate oxidase AL549_RS07295 PF06228 Haem utilisation ChuX/HutX AL549_RS07300 PF04055 Radical SAM superfamily AL549_RS07305 PF03544 Gram-negative bacterial TonB protein C-terminal AL549_RS07310 PF01618 MotA/TolQ/ExbB proton channel family AL549_RS07315 PF02472 Biopolymer transport protein ExbD/TolR AL549_RS07325 PF01032 FecCD transport family AL549_RS07330 PF00005 ABC transporter AL549_RS07355 PF01928 CYTH domain AL549_RS07360 PF07885 Ion channel AL549_RS07365 PF00672 HAMP domain AL549_RS07365 PF12729 Four helix bundle sensory module for signal transduction AL549_RS07365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS07370 PF03710 Glutamate-ammonia ligase adenylyltransferase AL549_RS07370 PF08335 GlnD PII-uridylyltransferase AL549_RS07375 PF01467 Cytidylyltransferase-like AL549_RS07375 PF00294 pfkB family carbohydrate kinase AL549_RS07380 PF02321 Outer membrane efflux protein AL549_RS07385 PF00293 NUDIX domain AL549_RS07390 PF06853 Protein of unknown function (DUF1249) AL549_RS07395 PF00149 Calcineurin-like phosphoesterase AL549_RS07400 PF05728 Uncharacterised protein family (UPF0227) AL549_RS07405 PF00986 DNA gyrase B subunit, carboxyl terminus AL549_RS07405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS07405 PF01751 Toprim domain AL549_RS07405 PF00204 DNA gyrase B AL549_RS07410 PF03989 DNA gyrase C-terminal domain, beta-propeller AL549_RS07410 PF00521 DNA gyrase/topoisomerase IV, subunit A AL549_RS07415 PF13180 PDZ domain AL549_RS07420 PF00595 PDZ domain AL549_RS07425 PF06295 Protein of unknown function (DUF1043) AL549_RS07430 PF03969 AFG1-like ATPase AL549_RS07440 PF00572 Ribosomal protein L13 AL549_RS07445 PF00380 Ribosomal protein S9/S16 AL549_RS07450 PF00355 Rieske [2Fe-2S] domain AL549_RS07450 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL549_RS07455 PF00033 Cytochrome b/b6/petB AL549_RS07455 PF00032 Cytochrome b(C-terminal)/b6/petD AL549_RS07460 PF02167 Cytochrome C1 family AL549_RS07465 PF00043 Glutathione S-transferase, C-terminal domain AL549_RS07465 PF02798 Glutathione S-transferase, N-terminal domain AL549_RS07470 PF04386 Stringent starvation protein B AL549_RS07475 PF04972 BON domain AL549_RS07480 PF13580 SIS domain AL549_RS07485 PF02021 Uncharacterised protein family UPF0102 AL549_RS07490 PF04348 LppC putative lipoprotein AL549_RS07495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_RS07505 PF01795 MraW methylase family AL549_RS07510 PF04999 Cell division protein FtsL AL549_RS07515 PF00905 Penicillin binding protein transpeptidase domain AL549_RS07515 PF03717 Penicillin-binding Protein dimerisation domain AL549_RS07520 PF02875 Mur ligase family, glutamate ligase domain AL549_RS07520 PF08245 Mur ligase middle domain AL549_RS07520 PF01225 Mur ligase family, catalytic domain AL549_RS07525 PF02875 Mur ligase family, glutamate ligase domain AL549_RS07525 PF01225 Mur ligase family, catalytic domain AL549_RS07525 PF08245 Mur ligase middle domain AL549_RS07530 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AL549_RS07530 PF00953 Glycosyl transferase family 4 AL549_RS07535 PF02875 Mur ligase family, glutamate ligase domain AL549_RS07535 PF08245 Mur ligase middle domain AL549_RS07540 PF01098 Cell cycle protein AL549_RS07545 PF04101 Glycosyltransferase family 28 C-terminal domain AL549_RS07545 PF03033 Glycosyltransferase family 28 N-terminal domain AL549_RS07550 PF02875 Mur ligase family, glutamate ligase domain AL549_RS07550 PF08245 Mur ligase middle domain AL549_RS07550 PF01225 Mur ligase family, catalytic domain AL549_RS07555 PF03799 Cell division protein FtsQ AL549_RS07555 PF08478 POTRA domain, FtsQ-type AL549_RS07560 PF02491 SHS2 domain inserted in FTSA AL549_RS07565 PF00091 Tubulin/FtsZ family, GTPase domain AL549_RS07565 PF12327 FtsZ family, C-terminal domain AL549_RS07570 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL549_RS07580 PF01043 SecA preprotein cross-linking domain AL549_RS07580 PF07516 SecA Wing and Scaffold domain AL549_RS07580 PF07517 SecA DEAD-like domain AL549_RS07580 PF02810 SEC-C motif AL549_RS07585 PF00293 NUDIX domain AL549_RS07590 PF05173 Dihydrodipicolinate reductase, C-terminus AL549_RS07590 PF01113 Dihydrodipicolinate reductase, N-terminus AL549_RS07595 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL549_RS07595 PF00117 Glutamine amidotransferase class-I AL549_RS07600 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL549_RS07600 PF02142 MGS-like domain AL549_RS07600 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL549_RS07615 PF01925 Sulfite exporter TauE/SafE AL549_RS07620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS07620 PF03466 LysR substrate binding domain AL549_RS07625 PF03458 UPF0126 domain AL549_RS07630 PF01497 Periplasmic binding protein AL549_RS07635 PF03186 CobD/Cbib protein AL549_RS07640 PF01048 Phosphorylase superfamily AL549_RS07650 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS07650 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL549_RS07655 PF04898 Glutamate synthase central domain AL549_RS07655 PF00310 Glutamine amidotransferases class-II AL549_RS07655 PF01493 GXGXG motif AL549_RS07655 PF01645 Conserved region in glutamate synthase AL549_RS07660 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL549_RS07660 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS07665 PF00310 Glutamine amidotransferases class-II AL549_RS07665 PF04898 Glutamate synthase central domain AL549_RS07665 PF01645 Conserved region in glutamate synthase AL549_RS07665 PF01493 GXGXG motif AL549_RS07670 PF04055 Radical SAM superfamily AL549_RS07670 PF16199 Radical_SAM C-terminal domain AL549_RS07675 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS07675 PF00563 EAL domain AL549_RS07675 PF01590 GAF domain AL549_RS07675 PF00360 Phytochrome region AL549_RS07680 PF00072 Response regulator receiver domain AL549_RS07680 PF01627 Hpt domain AL549_RS07680 PF18415 Histidine kinase receptor ArcB trans-membrane domain AL549_RS07680 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS07680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS07680 PF00989 PAS fold AL549_RS07690 PF00486 Transcriptional regulatory protein, C terminal AL549_RS07690 PF00072 Response regulator receiver domain AL549_RS07705 PF03737 Aldolase/RraA AL549_RS07715 PF00696 Amino acid kinase family AL549_RS07715 PF01842 ACT domain AL549_RS07715 PF13840 ACT domain AL549_RS07715 PF00742 Homoserine dehydrogenase AL549_RS07715 PF03447 Homoserine dehydrogenase, NAD binding domain AL549_RS07720 PF08544 GHMP kinases C terminal AL549_RS07720 PF00288 GHMP kinases N terminal domain AL549_RS07725 PF00291 Pyridoxal-phosphate dependent enzyme AL549_RS07725 PF14821 Threonine synthase N terminus AL549_RS07730 PF01228 Glycine radical AL549_RS07735 PF01261 Xylose isomerase-like TIM barrel AL549_RS07740 PF03167 Uracil DNA glycosylase superfamily AL549_RS07755 PF01235 Sodium:alanine symporter family AL549_RS07760 PF03883 Peroxide stress protein YaaA AL549_RS07765 PF00271 Helicase conserved C-terminal domain AL549_RS07765 PF00270 DEAD/DEAH box helicase AL549_RS07770 PF05175 Methyltransferase small domain AL549_RS07775 PF05525 Branched-chain amino acid transport protein AL549_RS07780 PF00258 Flavodoxin AL549_RS07785 PF00589 Phage integrase family AL549_RS07785 PF02899 Phage integrase, N-terminal SAM-like domain AL549_RS07790 PF13098 Thioredoxin-like domain AL549_RS07790 PF10411 Disulfide bond isomerase protein N-terminus AL549_RS07795 PF01368 DHH family AL549_RS07795 PF02272 DHHA1 domain AL549_RS07795 PF17768 RecJ OB domain AL549_RS07805 PF01336 OB-fold nucleic acid binding domain AL549_RS07805 PF00152 tRNA synthetases class II (D, K and N) AL549_RS07810 PF06505 Activator of aromatic catabolism AL549_RS07810 PF02954 Bacterial regulatory protein, Fis family AL549_RS07810 PF00158 Sigma-54 interaction domain AL549_RS07810 PF02830 V4R domain AL549_RS07820 PF00248 Aldo/keto reductase family AL549_RS07830 PF02976 DNA mismatch repair enzyme MutH AL549_RS07835 PF00293 NUDIX domain AL549_RS07840 PF01590 GAF domain AL549_RS07840 PF05524 PEP-utilising enzyme, N-terminal AL549_RS07840 PF00391 PEP-utilising enzyme, mobile domain AL549_RS07840 PF02896 PEP-utilising enzyme, TIM barrel domain AL549_RS07845 PF01925 Sulfite exporter TauE/SafE AL549_RS07850 PF01790 Prolipoprotein diacylglyceryl transferase AL549_RS07855 PF00303 Thymidylate synthase AL549_RS07865 PF02690 Na+/Pi-cotransporter AL549_RS07870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS07870 PF03466 LysR substrate binding domain AL549_RS07875 PF01022 Bacterial regulatory protein, arsR family AL549_RS07880 PF01649 Ribosomal protein S20 AL549_RS07885 PF03023 Lipid II flippase MurJ AL549_RS07890 PF01687 Riboflavin kinase AL549_RS07890 PF06574 FAD synthetase AL549_RS07895 PF08264 Anticodon-binding domain of tRNA AL549_RS07895 PF06827 Zinc finger found in FPG and IleRS AL549_RS07895 PF00133 tRNA synthetases class I (I, L, M and V) AL549_RS07900 PF01252 Signal peptidase (SPase) II AL549_RS07905 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_RS07910 PF02401 LytB protein AL549_RS07915 PF04397 LytTr DNA-binding domain AL549_RS07915 PF00072 Response regulator receiver domain AL549_RS07920 PF07694 5TMR of 5TMR-LYT AL549_RS07920 PF06580 Histidine kinase AL549_RS07925 PF02554 Carbon starvation protein CstA AL549_RS07945 PF03702 Anhydro-N-acetylmuramic acid kinase AL549_RS07950 PF00933 Glycosyl hydrolase family 3 N terminal domain AL549_RS07955 PF00793 DAHP synthetase I family AL549_RS07960 PF01817 Chorismate mutase type II AL549_RS07960 PF02153 Prephenate dehydrogenase AL549_RS07965 PF01551 Peptidase family M23 AL549_RS07965 PF04225 Opacity-associated protein A LysM-like domain AL549_RS07970 PF07238 PilZ domain AL549_RS07975 PF12848 ABC transporter AL549_RS07975 PF00005 ABC transporter AL549_RS07980 PF14718 Soluble lytic murein transglycosylase L domain AL549_RS07980 PF01464 Transglycosylase SLT domain AL549_RS07985 PF01371 Trp repressor protein AL549_RS07990 PF01931 Protein of unknown function DUF84 AL549_RS07995 PF00800 Prephenate dehydratase AL549_RS07995 PF01817 Chorismate mutase type II AL549_RS08000 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL549_RS08005 PF13525 Outer membrane lipoprotein AL549_RS08010 PF01479 S4 domain AL549_RS08010 PF00849 RNA pseudouridylate synthase AL549_RS08015 PF02578 Multi-copper polyphenol oxidoreductase laccase AL549_RS08020 PF10431 C-terminal, D2-small domain, of ClpB protein AL549_RS08020 PF02861 Clp amino terminal domain, pathogenicity island component AL549_RS08020 PF17871 AAA lid domain AL549_RS08020 PF07724 AAA domain (Cdc48 subfamily) AL549_RS08020 PF00004 ATPase family associated with various cellular activities (AAA) AL549_RS08055 PF03411 Penicillin-insensitive murein endopeptidase AL549_RS08060 PF00037 4Fe-4S binding domain AL549_RS08065 PF01136 Peptidase family U32 AL549_RS08065 PF16325 Peptidase family U32 C-terminal domain AL549_RS08070 PF04381 Putative exonuclease, RdgC AL549_RS08075 PF00072 Response regulator receiver domain AL549_RS08075 PF00486 Transcriptional regulatory protein, C terminal AL549_RS08080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS08080 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS08080 PF00989 PAS fold AL549_RS08080 PF11808 Phosphate regulon sensor protein PhoR AL549_RS08085 PF12849 PBP superfamily domain AL549_RS08090 PF02541 Ppx/GppA phosphatase family AL549_RS08095 PF02503 Polyphosphate kinase middle domain AL549_RS08095 PF13090 Polyphosphate kinase C-terminal domain 2 AL549_RS08095 PF13089 Polyphosphate kinase N-terminal domain AL549_RS08095 PF17941 Polyphosphate kinase C-terminal domain 1 AL549_RS08100 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS08105 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS08110 PF00005 ABC transporter AL549_RS08115 PF01895 PhoU domain AL549_RS08135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS08135 PF03466 LysR substrate binding domain AL549_RS08140 PF03976 Polyphosphate kinase 2 (PPK2) AL549_RS08145 PF03932 CutC family AL549_RS08150 PF00578 AhpC/TSA family AL549_RS08150 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL549_RS08155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS08155 PF03466 LysR substrate binding domain AL549_RS08160 PF01274 Malate synthase AL549_RS08165 PF00463 Isocitrate lyase family AL549_RS08170 PF00571 CBS domain AL549_RS08180 PF02547 Queuosine biosynthesis protein AL549_RS08185 PF01702 Queuine tRNA-ribosyltransferase AL549_RS08190 PF02699 Preprotein translocase subunit AL549_RS08195 PF02355 Protein export membrane protein AL549_RS08195 PF13721 SecD export protein N-terminal TM region AL549_RS08195 PF07549 SecD/SecF GG Motif AL549_RS08200 PF07549 SecD/SecF GG Motif AL549_RS08200 PF02355 Protein export membrane protein AL549_RS08215 PF00459 Inositol monophosphatase family AL549_RS08220 PF00588 SpoU rRNA Methylase family AL549_RS08225 PF02082 Transcriptional regulator AL549_RS08230 PF00266 Aminotransferase class-V AL549_RS08235 PF01592 NifU-like N terminal domain AL549_RS08240 PF01521 Iron-sulphur cluster biosynthesis AL549_RS08245 PF07743 HSCB C-terminal oligomerisation domain AL549_RS08245 PF00226 DnaJ domain AL549_RS08250 PF00012 Hsp70 protein AL549_RS08255 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_RS08260 PF04384 Iron-sulphur cluster assembly AL549_RS08265 PF12404 Peptidase AL549_RS08265 PF00883 Cytosol aminopeptidase family, catalytic domain AL549_RS08270 PF00334 Nucleoside diphosphate kinase AL549_RS08275 PF04055 Radical SAM superfamily AL549_RS08280 PF13464 Domain of unknown function (DUF4115) AL549_RS08285 PF04551 GcpE protein AL549_RS08290 PF13393 Histidyl-tRNA synthetase AL549_RS08290 PF03129 Anticodon binding domain AL549_RS08295 PF09976 Tetratricopeptide repeat-like domain AL549_RS08300 PF13360 PQQ-like domain AL549_RS08305 PF01926 50S ribosome-binding GTPase AL549_RS08305 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL549_RS08315 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS08315 PF13185 GAF domain AL549_RS08325 PF02601 Exonuclease VII, large subunit AL549_RS08325 PF13742 OB-fold nucleic acid binding domain AL549_RS08330 PF00478 IMP dehydrogenase / GMP reductase domain AL549_RS08330 PF00571 CBS domain AL549_RS08335 PF02540 NAD synthase AL549_RS08335 PF00117 Glutamine amidotransferase class-I AL549_RS08335 PF00958 GMP synthase C terminal domain AL549_RS08340 PF06483 Chitinase C AL549_RS08340 PF00704 Glycosyl hydrolases family 18 AL549_RS08345 PF01184 GPR1/FUN34/yaaH family AL549_RS08350 PF01235 Sodium:alanine symporter family AL549_RS08355 PF01266 FAD dependent oxidoreductase AL549_RS08360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS08360 PF03466 LysR substrate binding domain AL549_RS08365 PF07885 Ion channel AL549_RS08370 PF02028 BCCT, betaine/carnitine/choline family transporter AL549_RS08380 PF01300 Telomere recombination AL549_RS08380 PF03481 Putative GTP-binding controlling metal-binding AL549_RS08430 PF01668 SmpB protein AL549_RS08435 PF03364 Polyketide cyclase / dehydrase and lipid transport AL549_RS08440 PF03658 RnfH family Ubiquitin AL549_RS08445 PF04355 SmpA / OmlA family AL549_RS08450 PF02463 RecF/RecN/SMC N terminal domain AL549_RS08455 PF01513 ATP-NAD kinase AL549_RS08460 PF01025 GrpE AL549_RS08465 PF00375 Sodium:dicarboxylate symporter family AL549_RS08490 PF00012 Hsp70 protein AL549_RS08495 PF00684 DnaJ central domain AL549_RS08495 PF01556 DnaJ C terminal domain AL549_RS08495 PF00226 DnaJ domain AL549_RS08500 PF07963 Prokaryotic N-terminal methylation motif AL549_RS08500 PF00114 Pilin (bacterial filament) AL549_RS08505 PF07963 Prokaryotic N-terminal methylation motif AL549_RS08505 PF00114 Pilin (bacterial filament) AL549_RS08525 PF03806 AbgT putative transporter family AL549_RS08530 PF00756 Putative esterase AL549_RS08535 PF00107 Zinc-binding dehydrogenase AL549_RS08535 PF08240 Alcohol dehydrogenase GroES-like domain AL549_RS08540 PF03466 LysR substrate binding domain AL549_RS08540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS08545 PF14437 MafB19-like deaminase AL549_RS08555 PF01464 Transglycosylase SLT domain AL549_RS08555 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_RS08560 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL549_RS08560 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL549_RS08560 PF02769 AIR synthase related protein, C-terminal domain AL549_RS08585 PF07687 Peptidase dimerisation domain AL549_RS08585 PF01546 Peptidase family M20/M25/M40 AL549_RS08590 PF00860 Permease family AL549_RS08595 PF00156 Phosphoribosyl transferase domain AL549_RS08600 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) AL549_RS08605 PF07417 Sigma factor-binding transcriptional regulator Crl AL549_RS08610 PF00696 Amino acid kinase family AL549_RS08610 PF01472 PUA domain AL549_RS08615 PF00171 Aldehyde dehydrogenase family AL549_RS08620 PF03477 ATP cone domain AL549_RS08625 PF01872 RibD C-terminal domain AL549_RS08625 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL549_RS08630 PF00677 Lumazine binding domain AL549_RS08635 PF00925 GTP cyclohydrolase II AL549_RS08635 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL549_RS08640 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL549_RS08645 PF01029 NusB family AL549_RS08650 PF02769 AIR synthase related protein, C-terminal domain AL549_RS08650 PF00586 AIR synthase related protein, N-terminal domain AL549_RS08655 PF04608 Phosphatidylglycerophosphatase A AL549_RS08660 PF02780 Transketolase, C-terminal domain AL549_RS08660 PF02779 Transketolase, pyrimidine binding domain AL549_RS08660 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL549_RS08665 PF00348 Polyprenyl synthetase AL549_RS08670 PF02609 Exonuclease VII small subunit AL549_RS08675 PF01618 MotA/TolQ/ExbB proton channel family AL549_RS08680 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL549_RS08680 PF00691 OmpA family AL549_RS08685 PF02568 Thiamine biosynthesis protein (ThiI) AL549_RS08685 PF02926 THUMP domain AL549_RS08690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS08690 PF03466 LysR substrate binding domain AL549_RS08700 PF04241 Protein of unknown function (DUF423) AL549_RS08705 PF18125 RlmM ferredoxin-like domain AL549_RS08705 PF01728 FtsJ-like methyltransferase AL549_RS08710 PF01223 DNA/RNA non-specific endonuclease AL549_RS08715 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL549_RS08715 PF01367 5'-3' exonuclease, C-terminal SAM fold AL549_RS08720 PF11892 Domain of unknown function (DUF3412) AL549_RS08720 PF03641 Possible lysine decarboxylase AL549_RS08720 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AL549_RS08725 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS08735 PF14489 QueF-like protein AL549_RS08735 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL549_RS08740 PF07348 Syd protein (SUKH-2) AL549_RS08745 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AL549_RS08750 PF03180 NLPA lipoprotein AL549_RS08755 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS08760 PF09383 NIL domain AL549_RS08760 PF00005 ABC transporter AL549_RS08770 PF00356 Bacterial regulatory proteins, lacI family AL549_RS08775 PF02378 Phosphotransferase system, EIIC AL549_RS08775 PF00367 phosphotransferase system, EIIB AL549_RS08780 PF00128 Alpha amylase, catalytic domain AL549_RS08780 PF16657 Maltogenic Amylase, C-terminal domain AL549_RS08790 PF00464 Serine hydroxymethyltransferase AL549_RS08800 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL549_RS08800 PF04055 Radical SAM superfamily AL549_RS08805 PF03099 Biotin/lipoate A/B protein ligase family AL549_RS08810 PF04359 Protein of unknown function (DUF493) AL549_RS08815 PF00768 D-alanyl-D-alanine carboxypeptidase AL549_RS08815 PF07943 Penicillin-binding protein 5, C-terminal domain AL549_RS08820 PF03330 Lytic transglycolase AL549_RS08820 PF05036 Sporulation related domain AL549_RS08825 PF01098 Cell cycle protein AL549_RS08830 PF03717 Penicillin-binding Protein dimerisation domain AL549_RS08830 PF00905 Penicillin binding protein transpeptidase domain AL549_RS08835 PF02590 Predicted SPOUT methyltransferase AL549_RS08845 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AL549_RS08845 PF06144 DNA polymerase III, delta subunit AL549_RS08850 PF04390 Lipopolysaccharide-assembly AL549_RS08855 PF08264 Anticodon-binding domain of tRNA AL549_RS08855 PF00133 tRNA synthetases class I (I, L, M and V) AL549_RS08855 PF13603 Leucyl-tRNA synthetase, Domain 2 AL549_RS08860 PF07295 Zinc-ribbon containing domain AL549_RS08865 PF00795 Carbon-nitrogen hydrolase AL549_RS08870 PF00571 CBS domain AL549_RS08870 PF03471 Transporter associated domain AL549_RS08875 PF02130 Uncharacterized protein family UPF0054 AL549_RS08880 PF02562 PhoH-like protein AL549_RS08885 PF01938 TRAM domain AL549_RS08885 PF04055 Radical SAM superfamily AL549_RS08885 PF00919 Uncharacterized protein family UPF0004 AL549_RS08890 PF01494 FAD binding domain AL549_RS08975 PF01926 50S ribosome-binding GTPase AL549_RS08975 PF06071 Protein of unknown function (DUF933) AL549_RS08980 PF01195 Peptidyl-tRNA hydrolase AL549_RS08985 PF14572 Phosphoribosyl synthetase-associated domain AL549_RS08985 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL549_RS08990 PF08544 GHMP kinases C terminal AL549_RS08990 PF00288 GHMP kinases N terminal domain AL549_RS08995 PF03550 Outer membrane lipoprotein LolB AL549_RS09000 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL549_RS09000 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL549_RS09000 PF01488 Shikimate / quinate 5-dehydrogenase AL549_RS09005 PF03462 PCRF domain AL549_RS09005 PF00472 RF-1 domain AL549_RS09010 PF17827 PrmC N-terminal domain AL549_RS09010 PF13847 Methyltransferase domain AL549_RS09015 PF04247 Invasion gene expression up-regulator, SirB AL549_RS09020 PF13369 Transglutaminase-like superfamily AL549_RS09025 PF00793 DAHP synthetase I family AL549_RS09030 PF02872 5'-nucleotidase, C-terminal domain AL549_RS09030 PF00149 Calcineurin-like phosphoesterase AL549_RS09035 PF04073 Aminoacyl-tRNA editing domain AL549_RS09040 PF01479 S4 domain AL549_RS09040 PF00849 RNA pseudouridylate synthase AL549_RS09045 PF01713 Smr domain AL549_RS09060 PF01963 TraB family AL549_RS09065 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AL549_RS09065 PF02838 Glycosyl hydrolase family 20, domain 2 AL549_RS09065 PF03173 Putative carbohydrate binding domain AL549_RS09065 PF00728 Glycosyl hydrolase family 20, catalytic domain AL549_RS09075 PF00403 Heavy-metal-associated domain AL549_RS09080 PF13609 Gram-negative porin AL549_RS09085 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL549_RS09090 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL549_RS09120 PF01609 Transposase DDE domain AL549_RS09120 PF13006 Insertion element 4 transposase N-terminal AL549_RS09140 PF01584 CheW-like domain AL549_RS09140 PF00072 Response regulator receiver domain AL549_RS09145 PF01739 CheR methyltransferase, SAM binding domain AL549_RS09145 PF03705 CheR methyltransferase, all-alpha domain AL549_RS09150 PF00460 Flagella basal body rod protein AL549_RS09155 PF00460 Flagella basal body rod protein AL549_RS09155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL549_RS09160 PF13861 FlgD Tudor-like domain AL549_RS09160 PF03963 Flagellar hook capping protein - N-terminal region AL549_RS09160 PF13860 FlgD Ig-like domain AL549_RS09165 PF07559 Flagellar basal body protein FlaE AL549_RS09165 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL549_RS09165 PF00460 Flagella basal body rod protein AL549_RS09170 PF00460 Flagella basal body rod protein AL549_RS09170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL549_RS09175 PF00460 Flagella basal body rod protein AL549_RS09175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL549_RS09180 PF02107 Flagellar L-ring protein AL549_RS09185 PF02119 Flagellar P-ring protein AL549_RS09190 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL549_RS09190 PF10135 Rod binding protein AL549_RS09195 PF07196 Flagellin hook IN motif AL549_RS09195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL549_RS09200 PF00669 Bacterial flagellin N-terminal helical region AL549_RS09205 PF07196 Flagellin hook IN motif AL549_RS09205 PF00700 Bacterial flagellin C-terminal helical region AL549_RS09205 PF00669 Bacterial flagellin N-terminal helical region AL549_RS09210 PF00700 Bacterial flagellin C-terminal helical region AL549_RS09210 PF07196 Flagellin hook IN motif AL549_RS09210 PF00669 Bacterial flagellin N-terminal helical region AL549_RS09215 PF00700 Bacterial flagellin C-terminal helical region AL549_RS09215 PF07196 Flagellin hook IN motif AL549_RS09215 PF00669 Bacterial flagellin N-terminal helical region AL549_RS09220 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL549_RS09225 PF00391 PEP-utilising enzyme, mobile domain AL549_RS09225 PF02896 PEP-utilising enzyme, TIM barrel domain AL549_RS09225 PF05524 PEP-utilising enzyme, N-terminal AL549_RS09230 PF00381 PTS HPr component phosphorylation site AL549_RS09235 PF00291 Pyridoxal-phosphate dependent enzyme AL549_RS09245 PF04354 ZipA, C-terminal FtsZ-binding domain AL549_RS09250 PF03120 NAD-dependent DNA ligase OB-fold domain AL549_RS09250 PF01653 NAD-dependent DNA ligase adenylation domain AL549_RS09250 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL549_RS09250 PF12826 Helix-hairpin-helix motif AL549_RS09250 PF00533 BRCA1 C Terminus (BRCT) domain AL549_RS09270 PF16200 C-terminal region of band_7 AL549_RS09270 PF01145 SPFH domain / Band 7 family AL549_RS09275 PF00085 Thioredoxin AL549_RS09285 PF00106 short chain dehydrogenase AL549_RS09290 PF01370 NAD dependent epimerase/dehydratase family AL549_RS09290 PF08338 Domain of unknown function (DUF1731) AL549_RS09295 PF07556 Protein of unknown function (DUF1538) AL549_RS09300 PF07556 Protein of unknown function (DUF1538) AL549_RS09315 PF12850 Calcineurin-like phosphoesterase superfamily domain AL549_RS09330 PF17323 Trans-membrane regulatory protein ToxS AL549_RS09335 PF00486 Transcriptional regulatory protein, C terminal AL549_RS09340 PF00183 Hsp90 protein AL549_RS09340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS09345 PF05191 Adenylate kinase, active site lid AL549_RS09350 PF00762 Ferrochelatase AL549_RS09355 PF17200 Single Cache domain 2 AL549_RS09355 PF00672 HAMP domain AL549_RS09355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS09360 PF00854 POT family AL549_RS09370 PF13537 Glutamine amidotransferase domain AL549_RS09370 PF00733 Asparagine synthase AL549_RS09375 PF02254 TrkA-N domain AL549_RS09375 PF00999 Sodium/hydrogen exchanger family AL549_RS09380 PF00480 ROK family AL549_RS09380 PF01047 MarR family AL549_RS09385 PF01979 Amidohydrolase family AL549_RS09390 PF02378 Phosphotransferase system, EIIC AL549_RS09390 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AL549_RS09390 PF00367 phosphotransferase system, EIIB AL549_RS09395 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL549_RS09395 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL549_RS09400 PF01475 Ferric uptake regulator family AL549_RS09410 PF00258 Flavodoxin AL549_RS09420 PF12697 Alpha/beta hydrolase family AL549_RS09425 PF17206 SeqA protein N-terminal domain AL549_RS09425 PF03925 SeqA protein C-terminal domain AL549_RS09430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL549_RS09430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL549_RS09430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL549_RS09430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL549_RS09435 PF08348 YheO-like PAS domain AL549_RS09435 PF13309 HTH domain AL549_RS09440 PF01042 Endoribonuclease L-PSP AL549_RS09445 PF00375 Sodium:dicarboxylate symporter family AL549_RS09450 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS09450 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL549_RS09460 PF01784 NIF3 (NGG1p interacting factor 3) AL549_RS09465 PF00285 Citrate synthase, C-terminal domain AL549_RS09470 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL549_RS09475 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL549_RS09480 PF02910 Fumarate reductase flavoprotein C-term AL549_RS09480 PF00890 FAD binding domain AL549_RS09485 PF13085 2Fe-2S iron-sulfur cluster binding domain AL549_RS09490 PF00676 Dehydrogenase E1 component AL549_RS09490 PF16870 2-oxoglutarate dehydrogenase C-terminal AL549_RS09490 PF02779 Transketolase, pyrimidine binding domain AL549_RS09490 PF16078 2-oxoglutarate dehydrogenase N-terminus AL549_RS09495 PF00364 Biotin-requiring enzyme AL549_RS09495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL549_RS09495 PF02817 e3 binding domain AL549_RS09500 PF00549 CoA-ligase AL549_RS09500 PF08442 ATP-grasp domain AL549_RS09505 PF00549 CoA-ligase AL549_RS09505 PF02629 CoA binding domain AL549_RS09510 PF00950 ABC 3 transport family AL549_RS09515 PF00005 ABC transporter AL549_RS09520 PF01297 Zinc-uptake complex component A periplasmic AL549_RS09530 PF04023 FeoA domain AL549_RS09535 PF02421 Ferrous iron transport protein B AL549_RS09535 PF07664 Ferrous iron transport protein B C terminus AL549_RS09535 PF07670 Nucleoside recognition AL549_RS09535 PF17910 FeoB cytosolic helical domain AL549_RS09550 PF05746 DALR anticodon binding domain AL549_RS09550 PF03485 Arginyl tRNA synthetase N terminal domain AL549_RS09550 PF00750 tRNA synthetases class I (R) AL549_RS09555 PF06185 YecM protein AL549_RS09560 PF01842 ACT domain AL549_RS09560 PF00551 Formyl transferase AL549_RS09570 PF13307 Helicase C-terminal domain AL549_RS09570 PF04851 Type III restriction enzyme, res subunit AL549_RS09575 PF00814 Glycoprotease family AL549_RS09590 PF00561 alpha/beta hydrolase fold AL549_RS09595 PF13193 AMP-binding enzyme C-terminal domain AL549_RS09595 PF00501 AMP-binding enzyme AL549_RS09600 PF01612 3'-5' exonuclease AL549_RS09600 PF00570 HRDC domain AL549_RS09605 PF03776 Septum formation topological specificity factor MinE AL549_RS09610 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL549_RS09615 PF03775 Septum formation inhibitor MinC, C-terminal domain AL549_RS09615 PF05209 Septum formation inhibitor MinC, N-terminal domain AL549_RS09620 PF05166 YcgL domain AL549_RS09625 PF13406 Transglycosylase SLT domain AL549_RS09630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS09630 PF03466 LysR substrate binding domain AL549_RS09635 PF01773 Na+ dependent nucleoside transporter N-terminus AL549_RS09635 PF07670 Nucleoside recognition AL549_RS09635 PF07662 Na+ dependent nucleoside transporter C-terminus AL549_RS09645 PF00486 Transcriptional regulatory protein, C terminal AL549_RS09645 PF00072 Response regulator receiver domain AL549_RS09650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS09650 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS09650 PF18719 ArlS sensor domain AL549_RS09660 PF00109 Beta-ketoacyl synthase, N-terminal domain AL549_RS09660 PF02801 Beta-ketoacyl synthase, C-terminal domain AL549_RS09675 PF02801 Beta-ketoacyl synthase, C-terminal domain AL549_RS09675 PF00109 Beta-ketoacyl synthase, N-terminal domain AL549_RS09700 PF00221 Aromatic amino acid lyase AL549_RS09705 PF00535 Glycosyl transferase family 2 AL549_RS09715 PF13193 AMP-binding enzyme C-terminal domain AL549_RS09715 PF00501 AMP-binding enzyme AL549_RS09725 PF00550 Phosphopantetheine attachment site AL549_RS09730 PF00550 Phosphopantetheine attachment site AL549_RS09755 PF04820 Tryptophan halogenase AL549_RS09770 PF02743 Cache domain AL549_RS09770 PF00672 HAMP domain AL549_RS09770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS09775 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL549_RS09780 PF00486 Transcriptional regulatory protein, C terminal AL549_RS09780 PF00072 Response regulator receiver domain AL549_RS09785 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS09785 PF00672 HAMP domain AL549_RS09785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS09790 PF01547 Bacterial extracellular solute-binding protein AL549_RS09795 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS09800 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS09805 PF03459 TOBE domain AL549_RS09805 PF17912 MalK OB fold domain AL549_RS09805 PF00005 ABC transporter AL549_RS09810 PF03480 Bacterial extracellular solute-binding protein, family 7 AL549_RS09815 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL549_RS09820 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL549_RS09830 PF00158 Sigma-54 interaction domain AL549_RS09830 PF00072 Response regulator receiver domain AL549_RS09830 PF02954 Bacterial regulatory protein, Fis family AL549_RS09835 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS09835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS09835 PF02743 Cache domain AL549_RS09840 PF05697 Bacterial trigger factor protein (TF) AL549_RS09840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_RS09840 PF05698 Bacterial trigger factor protein (TF) C-terminus AL549_RS09845 PF00574 Clp protease AL549_RS09850 PF06689 ClpX C4-type zinc finger AL549_RS09850 PF07724 AAA domain (Cdc48 subfamily) AL549_RS09850 PF10431 C-terminal, D2-small domain, of ClpB protein AL549_RS09855 PF00004 ATPase family associated with various cellular activities (AAA) AL549_RS09855 PF05362 Lon protease (S16) C-terminal proteolytic domain AL549_RS09855 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL549_RS09860 PF00216 Bacterial DNA-binding protein AL549_RS09865 PF13145 PPIC-type PPIASE domain AL549_RS09885 PF01966 HD domain AL549_RS09885 PF13286 Phosphohydrolase-associated domain AL549_RS09895 PF00155 Aminotransferase class I and II AL549_RS09900 PF00425 chorismate binding enzyme AL549_RS09905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL549_RS09905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL549_RS09905 PF16582 Middle domain of thiamine pyrophosphate AL549_RS09910 PF12697 Alpha/beta hydrolase family AL549_RS09915 PF00378 Enoyl-CoA hydratase/isomerase AL549_RS09920 PF13378 Enolase C-terminal domain-like AL549_RS09925 PF13193 AMP-binding enzyme C-terminal domain AL549_RS09925 PF00501 AMP-binding enzyme AL549_RS09930 PF03601 Conserved hypothetical protein 698 AL549_RS09935 PF07690 Major Facilitator Superfamily AL549_RS09980 PF00529 HlyD membrane-fusion protein of T1SS AL549_RS09980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_RS09985 PF00873 AcrB/AcrD/AcrF family AL549_RS10000 PF00291 Pyridoxal-phosphate dependent enzyme AL549_RS10005 PF13404 AsnC-type helix-turn-helix domain AL549_RS10005 PF01037 Lrp/AsnC ligand binding domain AL549_RS10020 PF09619 Type III secretion system lipoprotein chaperone (YscW) AL549_RS10025 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL549_RS10035 PF13426 PAS domain AL549_RS10035 PF00563 EAL domain AL549_RS10035 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS10045 PF07969 Amidohydrolase family AL549_RS10065 PF00672 HAMP domain AL549_RS10065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS10065 PF02743 Cache domain AL549_RS10070 PF01263 Aldose 1-epimerase AL549_RS10075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_RS10075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL549_RS10080 PF01641 SelR domain AL549_RS10090 PF07023 Protein of unknown function (DUF1315) AL549_RS10095 PF17763 Glutaminase/Asparaginase C-terminal domain AL549_RS10095 PF00710 Asparaginase, N-terminal AL549_RS10100 PF01343 Peptidase family S49 AL549_RS10105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL549_RS10105 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS10110 PF00881 Nitroreductase family AL549_RS10115 PF01751 Toprim domain AL549_RS10115 PF01131 DNA topoisomerase AL549_RS10120 PF00850 Histone deacetylase domain AL549_RS10125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS10125 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS10125 PF09308 LuxQ, periplasmic AL549_RS10125 PF00072 Response regulator receiver domain AL549_RS10130 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS10130 PF00072 Response regulator receiver domain AL549_RS10135 PF13091 PLD-like domain AL549_RS10140 PF04074 YhcH/YjgK/YiaL AL549_RS10145 PF02386 Cation transport protein AL549_RS10150 PF02254 TrkA-N domain AL549_RS10150 PF02080 TrkA-C domain AL549_RS10160 PF11893 Domain of unknown function (DUF3413) AL549_RS10160 PF00884 Sulfatase AL549_RS10165 PF07208 Protein of unknown function (DUF1414) AL549_RS10170 PF04245 37-kD nucleoid-associated bacterial protein AL549_RS10185 PF03553 Na+/H+ antiporter family AL549_RS10190 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL549_RS10190 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL549_RS10200 PF00520 Ion transport protein AL549_RS10200 PF00027 Cyclic nucleotide-binding domain AL549_RS10205 PF01914 MarC family integral membrane protein AL549_RS10210 PF00465 Iron-containing alcohol dehydrogenase AL549_RS10210 PF00171 Aldehyde dehydrogenase family AL549_RS10225 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL549_RS10225 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL549_RS10230 PF00462 Glutaredoxin AL549_RS10240 PF03553 Na+/H+ antiporter family AL549_RS10240 PF13726 Na+-H+ antiporter family AL549_RS10245 PF00929 Exonuclease AL549_RS10250 PF00691 OmpA family AL549_RS10250 PF18393 MotY N-terminal domain AL549_RS10255 PF10952 Protein of unknown function (DUF2753) AL549_RS10260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_RS10265 PF10576 Iron-sulfur binding domain of endonuclease III AL549_RS10265 PF00730 HhH-GPD superfamily base excision DNA repair protein AL549_RS10265 PF00633 Helix-hairpin-helix motif AL549_RS10270 PF02508 Rnf-Nqr subunit, membrane protein AL549_RS10275 PF04205 FMN-binding domain AL549_RS10280 PF03116 NQR2, RnfD, RnfE family AL549_RS10285 PF12838 4Fe-4S dicluster domain AL549_RS10285 PF10531 SLBB domain AL549_RS10285 PF13375 RnfC Barrel sandwich hybrid domain AL549_RS10285 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL549_RS10290 PF04060 Putative Fe-S cluster AL549_RS10295 PF02508 Rnf-Nqr subunit, membrane protein AL549_RS10305 PF04851 Type III restriction enzyme, res subunit AL549_RS10305 PF02151 UvrB/uvrC motif AL549_RS10305 PF00271 Helicase conserved C-terminal domain AL549_RS10305 PF12344 Ultra-violet resistance protein B AL549_RS10305 PF17757 UvrB interaction domain AL549_RS10310 PF00158 Sigma-54 interaction domain AL549_RS10310 PF02954 Bacterial regulatory protein, Fis family AL549_RS10310 PF00072 Response regulator receiver domain AL549_RS10315 PF01627 Hpt domain AL549_RS10320 PF01933 Uncharacterised protein family UPF0052 AL549_RS10325 PF06463 Molybdenum Cofactor Synthesis C AL549_RS10325 PF04055 Radical SAM superfamily AL549_RS10330 PF00994 Probable molybdopterin binding domain AL549_RS10335 PF01967 MoaC family AL549_RS10340 PF02597 ThiS family AL549_RS10345 PF02391 MoaE protein AL549_RS10350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_RS10355 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS10360 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_RS10360 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS10365 PF00005 ABC transporter AL549_RS10365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS10370 PF00005 ABC transporter AL549_RS10370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS10375 PF13409 Glutathione S-transferase, N-terminal domain AL549_RS10385 PF03795 YCII-related domain AL549_RS10390 PF03061 Thioesterase superfamily AL549_RS10395 PF04279 Intracellular septation protein A AL549_RS10405 PF00375 Sodium:dicarboxylate symporter family AL549_RS10410 PF00290 Tryptophan synthase alpha chain AL549_RS10415 PF00291 Pyridoxal-phosphate dependent enzyme AL549_RS10420 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL549_RS10420 PF00218 Indole-3-glycerol phosphate synthase AL549_RS10425 PF00591 Glycosyl transferase family, a/b domain AL549_RS10425 PF02885 Glycosyl transferase family, helical bundle domain AL549_RS10430 PF00117 Glutamine amidotransferase class-I AL549_RS10435 PF04715 Anthranilate synthase component I, N terminal region AL549_RS10435 PF00425 chorismate binding enzyme AL549_RS10440 PF08056 Tryptophan operon leader peptide AL549_RS10445 PF02811 PHP domain AL549_RS10450 PF01300 Telomere recombination AL549_RS10460 PF01479 S4 domain AL549_RS10460 PF00849 RNA pseudouridylate synthase AL549_RS10465 PF04269 Protein of unknown function, DUF440 AL549_RS10470 PF09285 Elongation factor P, C-terminal AL549_RS10470 PF01132 Elongation factor P (EF-P) OB domain AL549_RS10470 PF08207 Elongation factor P (EF-P) KOW-like domain AL549_RS10480 PF08448 PAS fold AL549_RS10480 PF00563 EAL domain AL549_RS10480 PF08447 PAS fold AL549_RS10480 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS10485 PF00136 DNA polymerase family B AL549_RS10485 PF03104 DNA polymerase family B, exonuclease domain AL549_RS10490 PF00072 Response regulator receiver domain AL549_RS10490 PF00196 Bacterial regulatory proteins, luxR family AL549_RS10495 PF08459 UvrC Helix-hairpin-helix N-terminal AL549_RS10495 PF02151 UvrB/uvrC motif AL549_RS10495 PF01541 GIY-YIG catalytic domain AL549_RS10500 PF01066 CDP-alcohol phosphatidyltransferase AL549_RS10525 PF00202 Aminotransferase class-III AL549_RS10530 PF03435 Saccharopine dehydrogenase NADP binding domain AL549_RS10530 PF16653 Saccharopine dehydrogenase C-terminal domain AL549_RS10550 PF00994 Probable molybdopterin binding domain AL549_RS10550 PF02464 Competence-damaged protein AL549_RS10560 PF00268 Ribonucleotide reductase, small chain AL549_RS10565 PF03477 ATP cone domain AL549_RS10565 PF02867 Ribonucleotide reductase, barrel domain AL549_RS10565 PF00317 Ribonucleotide reductase, all-alpha domain AL549_RS10580 PF00521 DNA gyrase/topoisomerase IV, subunit A AL549_RS10580 PF03989 DNA gyrase C-terminal domain, beta-propeller AL549_RS10595 PF02335 Cytochrome c552 AL549_RS10605 PF13247 4Fe-4S dicluster domain AL549_RS10610 PF03916 Polysulphide reductase, NrfD AL549_RS10615 PF01578 Cytochrome C assembly protein AL549_RS10615 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL549_RS10620 PF08534 Redoxin AL549_RS10625 PF03918 Cytochrome C biogenesis protein AL549_RS10635 PF01588 Putative tRNA binding domain AL549_RS10635 PF09334 tRNA synthetases class I (M) AL549_RS10640 PF10609 NUBPL iron-transfer P-loop NTPase AL549_RS10645 PF00485 Phosphoribulokinase / Uridine kinase family AL549_RS10660 PF12557 Cob(I)alamin adenosyltransferase N terminal AL549_RS10660 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AL549_RS10665 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL549_RS10670 PF00916 Sulfate permease family AL549_RS10670 PF01740 STAS domain AL549_RS10675 PF12111 Polyribonucleotide phosphorylase C terminal AL549_RS10675 PF10150 Ribonuclease E/G family AL549_RS10675 PF00575 S1 RNA binding domain AL549_RS10680 PF01479 S4 domain AL549_RS10680 PF00849 RNA pseudouridylate synthase AL549_RS10685 PF02545 Maf-like protein AL549_RS10690 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL549_RS10695 PF01783 Ribosomal L32p protein family AL549_RS10700 PF02504 Fatty acid synthesis protein AL549_RS10705 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL549_RS10705 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL549_RS10710 PF00698 Acyl transferase domain AL549_RS10720 PF00550 Phosphopantetheine attachment site AL549_RS10725 PF00109 Beta-ketoacyl synthase, N-terminal domain AL549_RS10725 PF02801 Beta-ketoacyl synthase, C-terminal domain AL549_RS10730 PF01063 Amino-transferase class IV AL549_RS10735 PF02618 YceG-like family AL549_RS10740 PF02223 Thymidylate kinase AL549_RS10745 PF09115 DNA polymerase III, delta subunit, C terminal AL549_RS10750 PF01026 TatD related DNase AL549_RS10755 PF02378 Phosphotransferase system, EIIC AL549_RS10755 PF00367 phosphotransferase system, EIIB AL549_RS10770 PF00209 Sodium:neurotransmitter symporter family AL549_RS10785 PF01734 Patatin-like phospholipase AL549_RS10790 PF02887 Pyruvate kinase, alpha/beta domain AL549_RS10790 PF00224 Pyruvate kinase, barrel domain AL549_RS10795 PF00480 ROK family AL549_RS10800 PF01584 CheW-like domain AL549_RS10800 PF00072 Response regulator receiver domain AL549_RS10805 PF01336 OB-fold nucleic acid binding domain AL549_RS10805 PF02811 PHP domain AL549_RS10805 PF14579 Helix-hairpin-helix motif AL549_RS10805 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL549_RS10805 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL549_RS10820 PF00106 short chain dehydrogenase AL549_RS10825 PF01343 Peptidase family S49 AL549_RS10825 PF08496 Peptidase family S49 N-terminal AL549_RS10830 PF02224 Cytidylate kinase AL549_RS10835 PF00575 S1 RNA binding domain AL549_RS10840 PF00216 Bacterial DNA-binding protein AL549_RS10845 PF06305 Lipopolysaccharide assembly protein A domain AL549_RS10850 PF18073 Rubredoxin metal binding domain AL549_RS10855 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL549_RS10860 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS10865 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS10865 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_RS10870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_RS10875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS10875 PF00005 ABC transporter AL549_RS10880 PF00005 ABC transporter AL549_RS10880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS10895 PF13006 Insertion element 4 transposase N-terminal AL549_RS10895 PF01609 Transposase DDE domain AL549_RS10920 PF01471 Putative peptidoglycan binding domain AL549_RS10920 PF03734 L,D-transpeptidase catalytic domain AL549_RS10925 PF05951 Bacterial protein of unknown function (DUF882) AL549_RS10930 PF00753 Metallo-beta-lactamase superfamily AL549_RS10945 PF01609 Transposase DDE domain AL549_RS10945 PF13006 Insertion element 4 transposase N-terminal AL549_RS10950 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AL549_RS10960 PF03466 LysR substrate binding domain AL549_RS10960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS10970 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL549_RS10970 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL549_RS10975 PF01037 Lrp/AsnC ligand binding domain AL549_RS10980 PF17854 FtsK alpha domain AL549_RS10980 PF09397 Ftsk gamma domain AL549_RS10980 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL549_RS10980 PF01580 FtsK/SpoIIIE family AL549_RS10985 PF03548 Outer membrane lipoprotein carrier protein LolA AL549_RS10990 PF16193 AAA C-terminal domain AL549_RS10990 PF00004 ATPase family associated with various cellular activities (AAA) AL549_RS10990 PF12002 MgsA AAA+ ATPase C terminal AL549_RS10995 PF02403 Seryl-tRNA synthetase N-terminal domain AL549_RS10995 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL549_RS11000 PF00202 Aminotransferase class-III AL549_RS11005 PF04055 Radical SAM superfamily AL549_RS11005 PF06968 Biotin and Thiamin Synthesis associated domain AL549_RS11010 PF00155 Aminotransferase class I and II AL549_RS11015 PF08241 Methyltransferase domain AL549_RS11025 PF01435 Peptidase family M48 AL549_RS11075 PF00206 Lyase AL549_RS11075 PF08328 Adenylosuccinate lyase C-terminal AL549_RS11080 PF04356 Protein of unknown function (DUF489) AL549_RS11095 PF00294 pfkB family carbohydrate kinase AL549_RS11100 PF00816 H-NS histone family AL549_RS11105 PF03553 Na+/H+ antiporter family AL549_RS11110 PF01634 ATP phosphoribosyltransferase AL549_RS11110 PF08029 HisG, C-terminal domain AL549_RS11115 PF00815 Histidinol dehydrogenase AL549_RS11120 PF00155 Aminotransferase class I and II AL549_RS11125 PF08645 Polynucleotide kinase 3 phosphatase AL549_RS11125 PF00475 Imidazoleglycerol-phosphate dehydratase AL549_RS11130 PF00117 Glutamine amidotransferase class-I AL549_RS11135 PF00977 Histidine biosynthesis protein AL549_RS11140 PF00977 Histidine biosynthesis protein AL549_RS11145 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL549_RS11145 PF01502 Phosphoribosyl-AMP cyclohydrolase AL549_RS11150 PF02810 SEC-C motif AL549_RS11155 PF08668 HDOD domain AL549_RS11155 PF00563 EAL domain AL549_RS11160 PF00149 Calcineurin-like phosphoesterase AL549_RS11165 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL549_RS11170 PF01406 tRNA synthetases class I (C) catalytic domain AL549_RS11170 PF09190 DALR domain AL549_RS11175 PF00265 Thymidine kinase AL549_RS11185 PF01370 NAD dependent epimerase/dehydratase family AL549_RS11190 PF03466 LysR substrate binding domain AL549_RS11190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS11210 PF01226 Formate/nitrite transporter AL549_RS11215 PF03649 Uncharacterised protein family (UPF0014) AL549_RS11220 PF06796 Periplasmic nitrate reductase protein NapE AL549_RS11225 PF03264 NapC/NirT cytochrome c family, N-terminal region AL549_RS11230 PF01568 Molydopterin dinucleotide binding domain AL549_RS11230 PF18364 Molybdopterin oxidoreductase N-terminal domain AL549_RS11230 PF00384 Molybdopterin oxidoreductase AL549_RS11250 PF16874 Glycosyl hydrolase family 36 C-terminal domain AL549_RS11250 PF16875 Glycosyl hydrolase family 36 N-terminal domain AL549_RS11260 PF02833 DHHA2 domain AL549_RS11260 PF01368 DHH family AL549_RS11275 PF00005 ABC transporter AL549_RS11280 PF00005 ABC transporter AL549_RS11280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS11285 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_RS11285 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS11290 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS11295 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_RS11300 PF00158 Sigma-54 interaction domain AL549_RS11300 PF02954 Bacterial regulatory protein, Fis family AL549_RS11305 PF04012 PspA/IM30 family AL549_RS11310 PF06667 Phage shock protein B AL549_RS11315 PF04024 PspC domain AL549_RS11325 PF13533 Biotin-lipoyl like AL549_RS11330 PF00873 AcrB/AcrD/AcrF family AL549_RS11335 PF03352 Methyladenine glycosylase AL549_RS11340 PF01053 Cys/Met metabolism PLP-dependent enzyme AL549_RS11345 PF13396 Phospholipase_D-nuclease N-terminal AL549_RS11345 PF13091 PLD-like domain AL549_RS11350 PF00209 Sodium:neurotransmitter symporter family AL549_RS11355 PF00672 HAMP domain AL549_RS11355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS11355 PF12729 Four helix bundle sensory module for signal transduction AL549_RS11360 PF00849 RNA pseudouridylate synthase AL549_RS11370 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_RS11370 PF00970 Oxidoreductase FAD-binding domain AL549_RS11370 PF00175 Oxidoreductase NAD-binding domain AL549_RS11375 PF03063 Prismane/CO dehydrogenase family AL549_RS11380 PF00158 Sigma-54 interaction domain AL549_RS11380 PF01590 GAF domain AL549_RS11385 PF01066 CDP-alcohol phosphatidyltransferase AL549_RS11390 PF00005 ABC transporter AL549_RS11395 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS11400 PF13416 Bacterial extracellular solute-binding protein AL549_RS11410 PF06945 Protein of unknown function (DUF1289) AL549_RS11425 PF00563 EAL domain AL549_RS11425 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS11425 PF03707 Bacterial signalling protein N terminal repeat AL549_RS11440 PF01386 Ribosomal L25p family AL549_RS11445 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS11445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS11445 PF00672 HAMP domain AL549_RS11450 PF00486 Transcriptional regulatory protein, C terminal AL549_RS11450 PF00072 Response regulator receiver domain AL549_RS11460 PF04851 Type III restriction enzyme, res subunit AL549_RS11460 PF00271 Helicase conserved C-terminal domain AL549_RS11465 PF00849 RNA pseudouridylate synthase AL549_RS11465 PF01479 S4 domain AL549_RS11470 PF07690 Major Facilitator Superfamily AL549_RS11480 PF00999 Sodium/hydrogen exchanger family AL549_RS11485 PF11066 Protein of unknown function (DUF2867) AL549_RS11485 PF13460 NAD(P)H-binding AL549_RS11490 PF00005 ABC transporter AL549_RS11505 PF06965 Na+/H+ antiporter 1 AL549_RS11515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL549_RS11515 PF09317 Domain of unknown function (DUF1974) AL549_RS11515 PF02770 Acyl-CoA dehydrogenase, middle domain AL549_RS11515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL549_RS11520 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AL549_RS11520 PF12241 Trans-2-enoyl-CoA reductase catalytic region AL549_RS11520 PF07055 Enoyl reductase FAD binding domain AL549_RS11525 PF02080 TrkA-C domain AL549_RS11525 PF06826 Predicted Permease Membrane Region AL549_RS11530 PF00462 Glutaredoxin AL549_RS11535 PF00465 Iron-containing alcohol dehydrogenase AL549_RS11540 PF01418 Helix-turn-helix domain, rpiR family AL549_RS11540 PF01380 SIS domain AL549_RS11545 PF00282 Pyridoxal-dependent decarboxylase conserved domain AL549_RS11555 PF03956 Lysine exporter LysO AL549_RS11565 PF04993 TfoX N-terminal domain AL549_RS11565 PF04994 TfoX C-terminal domain AL549_RS11580 PF00989 PAS fold AL549_RS11580 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS11580 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS11580 PF00989 PAS fold AL549_RS11580 PF13188 PAS domain AL549_RS11580 PF13426 PAS domain AL549_RS11580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS11580 PF13426 PAS domain AL549_RS11580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS11580 PF13188 PAS domain AL549_RS11590 PF00266 Aminotransferase class-V AL549_RS11595 PF00005 ABC transporter AL549_RS11595 PF00664 ABC transporter transmembrane region AL549_RS11600 PF00664 ABC transporter transmembrane region AL549_RS11600 PF00005 ABC transporter AL549_RS11605 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS11615 PF00266 Aminotransferase class-V AL549_RS11625 PF00072 Response regulator receiver domain AL549_RS11625 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS11630 PF00939 Sodium:sulfate symporter transmembrane region AL549_RS11635 PF02698 DUF218 domain AL549_RS11640 PF03949 Malic enzyme, NAD binding domain AL549_RS11640 PF00390 Malic enzyme, N-terminal domain AL549_RS11645 PF00270 DEAD/DEAH box helicase AL549_RS11645 PF04408 Helicase associated domain (HA2) AL549_RS11645 PF00271 Helicase conserved C-terminal domain AL549_RS11645 PF08482 ATP-dependent helicase C-terminal AL549_RS11650 PF02253 Phospholipase A1 AL549_RS11660 PF01259 SAICAR synthetase AL549_RS11670 PF04172 LrgB-like family AL549_RS11675 PF03788 LrgA family AL549_RS11680 PF00929 Exonuclease AL549_RS11680 PF08411 Exonuclease C-terminal AL549_RS11695 PF02277 Phosphoribosyltransferase AL549_RS11700 PF02654 Cobalamin-5-phosphate synthase AL549_RS11705 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AL549_RS11720 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL549_RS11725 PF01032 FecCD transport family AL549_RS11730 PF00005 ABC transporter AL549_RS11745 PF07690 Major Facilitator Superfamily AL549_RS11750 PF03466 LysR substrate binding domain AL549_RS11750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS11760 PF01863 Protein of unknown function DUF45 AL549_RS11765 PF05971 RNA methyltransferase AL549_RS11780 PF04204 Homoserine O-succinyltransferase AL549_RS11785 PF02872 5'-nucleotidase, C-terminal domain AL549_RS11785 PF00149 Calcineurin-like phosphoesterase AL549_RS11790 PF07687 Peptidase dimerisation domain AL549_RS11790 PF01546 Peptidase family M20/M25/M40 AL549_RS11795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_RS11800 PF04209 homogentisate 1,2-dioxygenase AL549_RS11810 PF14497 Glutathione S-transferase, C-terminal domain AL549_RS11810 PF02798 Glutathione S-transferase, N-terminal domain AL549_RS11845 PF00072 Response regulator receiver domain AL549_RS11845 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS11850 PF00313 'Cold-shock' DNA-binding domain AL549_RS11860 PF00141 Peroxidase AL549_RS11865 PF03009 Glycerophosphoryl diester phosphodiesterase family AL549_RS11870 PF00455 DeoR C terminal sensor domain AL549_RS11870 PF08220 DeoR-like helix-turn-helix domain AL549_RS11875 PF17912 MalK OB fold domain AL549_RS11875 PF00005 ABC transporter AL549_RS11880 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS11885 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS11890 PF13416 Bacterial extracellular solute-binding protein AL549_RS11895 PF00072 Response regulator receiver domain AL549_RS11900 PF02743 Cache domain AL549_RS11900 PF00672 HAMP domain AL549_RS11900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS11905 PF01925 Sulfite exporter TauE/SafE AL549_RS11910 PF00196 Bacterial regulatory proteins, luxR family AL549_RS11910 PF00072 Response regulator receiver domain AL549_RS11935 PF01970 Tripartite tricarboxylate transporter TctA family AL549_RS11955 PF02384 N-6 DNA Methylase AL549_RS11955 PF12161 HsdM N-terminal domain AL549_RS11960 PF01420 Type I restriction modification DNA specificity domain AL549_RS11975 PF00285 Citrate synthase, C-terminal domain AL549_RS11980 PF00330 Aconitase family (aconitate hydratase) AL549_RS11980 PF00694 Aconitase C-terminal domain AL549_RS11985 PF04303 PrpF protein AL549_RS11990 PF16177 Acetyl-coenzyme A synthetase N-terminus AL549_RS11990 PF13193 AMP-binding enzyme C-terminal domain AL549_RS11990 PF00501 AMP-binding enzyme AL549_RS12000 PF00089 Trypsin AL549_RS12010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS12010 PF02743 Cache domain AL549_RS12010 PF00672 HAMP domain AL549_RS12020 PF04055 Radical SAM superfamily AL549_RS12025 PF06508 Queuosine biosynthesis protein QueC AL549_RS12030 PF17151 Periplasmic sensor domain AL549_RS12030 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS12055 PF17785 PUA-like domain AL549_RS12055 PF10672 S-adenosylmethionine-dependent methyltransferase AL549_RS12060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS12060 PF02743 Cache domain AL549_RS12060 PF00672 HAMP domain AL549_RS12065 PF00708 Acylphosphatase AL549_RS12070 PF04358 DsrC like protein AL549_RS12080 PF01027 Inhibitor of apoptosis-promoting Bax1 AL549_RS12085 PF00005 ABC transporter AL549_RS12090 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS12095 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS12100 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_RS12105 PF14824 Sirohaem biosynthesis protein central AL549_RS12105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_RS12105 PF10414 Sirohaem synthase dimerisation region AL549_RS12110 PF12800 4Fe-4S binding domain AL549_RS12110 PF12838 4Fe-4S dicluster domain AL549_RS12115 PF13237 4Fe-4S dicluster domain AL549_RS12115 PF12801 4Fe-4S binding domain AL549_RS12120 PF01553 Acyltransferase AL549_RS12125 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AL549_RS12130 PF01810 LysE type translocator AL549_RS12140 PF01235 Sodium:alanine symporter family AL549_RS12165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_RS12180 PF17203 Single cache domain 3 AL549_RS12180 PF00989 PAS fold AL549_RS12180 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AL549_RS12180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS12185 PF00072 Response regulator receiver domain AL549_RS12185 PF12431 Transcriptional regulator AL549_RS12190 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AL549_RS12190 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AL549_RS12195 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AL549_RS12200 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AL549_RS12200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL549_RS12235 PF02397 Bacterial sugar transferase AL549_RS12245 PF00534 Glycosyl transferases group 1 AL549_RS12245 PF13439 Glycosyltransferase Family 4 AL549_RS12260 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS12290 PF00158 Sigma-54 interaction domain AL549_RS12290 PF02954 Bacterial regulatory protein, Fis family AL549_RS12290 PF00072 Response regulator receiver domain AL549_RS12295 PF17149 Periplasmic sensor domain found in signal transduction proteins AL549_RS12295 PF00672 HAMP domain AL549_RS12295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS12295 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS12295 PF01627 Hpt domain AL549_RS12295 PF00072 Response regulator receiver domain AL549_RS12310 PF10531 SLBB domain AL549_RS12310 PF02563 Polysaccharide biosynthesis/export protein AL549_RS12320 PF01740 STAS domain AL549_RS12325 PF01068 ATP dependent DNA ligase domain AL549_RS12325 PF14743 DNA ligase OB-like domain AL549_RS12330 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS12330 PF17158 Membrane-associated sensor, integral membrane domain AL549_RS12335 PF04461 Protein of unknown function (DUF520) AL549_RS12340 PF00793 DAHP synthetase I family AL549_RS12355 PF13509 S1 domain AL549_RS12355 PF17783 CvfB-like winged helix domain AL549_RS12360 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AL549_RS12360 PF01189 16S rRNA methyltransferase RsmB/F AL549_RS12360 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AL549_RS12365 PF02470 MlaD protein AL549_RS12370 PF04403 Paraquat-inducible protein A AL549_RS12375 PF00005 ABC transporter AL549_RS12375 PF00664 ABC transporter transmembrane region AL549_RS12380 PF13185 GAF domain AL549_RS12385 PF04352 ProQ/FINO family AL549_RS12385 PF17516 ProQ C-terminal domain AL549_RS12390 PF11818 C-terminal domain of tail specific protease (DUF3340) AL549_RS12390 PF00595 PDZ domain AL549_RS12390 PF03572 Peptidase family S41 AL549_RS12390 PF17804 Tail specific protease N-terminal domain AL549_RS12400 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL549_RS12400 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL549_RS12400 PF01433 Peptidase family M1 domain AL549_RS12410 PF05088 Bacterial NAD-glutamate dehydrogenase AL549_RS12415 PF01180 Dihydroorotate dehydrogenase AL549_RS12420 PF07126 Cell-division protein ZapC AL549_RS12425 PF02926 THUMP domain AL549_RS12425 PF01170 Putative RNA methylase family UPF0020 AL549_RS12425 PF10672 S-adenosylmethionine-dependent methyltransferase AL549_RS12435 PF16326 ABC transporter C-terminal domain AL549_RS12435 PF12848 ABC transporter AL549_RS12435 PF00005 ABC transporter AL549_RS12445 PF04957 Ribosome modulation factor AL549_RS12450 PF07977 FabA-like domain AL549_RS12455 PF05362 Lon protease (S16) C-terminal proteolytic domain AL549_RS12455 PF13654 AAA domain AL549_RS12460 PF17414 MatP C-terminal ribbon-helix-helix domain AL549_RS12460 PF06303 MatP N-terminal domain AL549_RS12480 PF00072 Response regulator receiver domain AL549_RS12480 PF09308 LuxQ, periplasmic AL549_RS12480 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS12480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS12495 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL549_RS12510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL549_RS12510 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL549_RS12520 PF00403 Heavy-metal-associated domain AL549_RS12535 PF00027 Cyclic nucleotide-binding domain AL549_RS12535 PF13545 Crp-like helix-turn-helix domain AL549_RS12540 PF00582 Universal stress protein family AL549_RS12545 PF01171 PP-loop family AL549_RS12550 PF13006 Insertion element 4 transposase N-terminal AL549_RS12550 PF01609 Transposase DDE domain AL549_RS12560 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL549_RS12570 PF08402 TOBE domain AL549_RS12570 PF00005 ABC transporter AL549_RS12575 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS12580 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS12585 PF13416 Bacterial extracellular solute-binding protein AL549_RS12590 PF13416 Bacterial extracellular solute-binding protein AL549_RS12595 PF02146 Sir2 family AL549_RS12600 PF00909 Ammonium Transporter Family AL549_RS12635 PF13247 4Fe-4S dicluster domain AL549_RS12640 PF00384 Molybdopterin oxidoreductase AL549_RS12640 PF01568 Molydopterin dinucleotide binding domain AL549_RS12640 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS12670 PF02634 FdhD/NarQ family AL549_RS12675 PF02743 Cache domain AL549_RS12675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS12675 PF00672 HAMP domain AL549_RS12680 PF00005 ABC transporter AL549_RS12680 PF12848 ABC transporter AL549_RS12695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS12695 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS12695 PF00989 PAS fold AL549_RS12700 PF02954 Bacterial regulatory protein, Fis family AL549_RS12700 PF00072 Response regulator receiver domain AL549_RS12700 PF00158 Sigma-54 interaction domain AL549_RS12705 PF12849 PBP superfamily domain AL549_RS12710 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS12715 PF08402 TOBE domain AL549_RS12715 PF00005 ABC transporter AL549_RS12720 PF12804 MobA-like NTP transferase domain AL549_RS12725 PF03453 MoeA N-terminal region (domain I and II) AL549_RS12725 PF03454 MoeA C-terminal region (domain IV) AL549_RS12725 PF00994 Probable molybdopterin binding domain AL549_RS12735 PF00480 ROK family AL549_RS12740 PF03942 DTW domain AL549_RS12750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS12750 PF00672 HAMP domain AL549_RS12750 PF02743 Cache domain AL549_RS12755 PF00877 NlpC/P60 family AL549_RS12765 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS12765 PF05230 MASE2 domain AL549_RS12770 PF01339 CheB methylesterase AL549_RS12770 PF00072 Response regulator receiver domain AL549_RS12775 PF03881 Fructosamine kinase AL549_RS12785 PF00677 Lumazine binding domain AL549_RS12790 PF01554 MatE AL549_RS12825 PF13333 Integrase core domain AL549_RS12825 PF00665 Integrase core domain AL549_RS12825 PF13276 HTH-like domain AL549_RS12915 PF00665 Integrase core domain AL549_RS12915 PF13333 Integrase core domain AL549_RS12915 PF13276 HTH-like domain AL549_RS13100 PF14552 Tautomerase enzyme AL549_RS13185 PF00043 Glutathione S-transferase, C-terminal domain AL549_RS13185 PF02798 Glutathione S-transferase, N-terminal domain AL549_RS13265 PF13302 Acetyltransferase (GNAT) domain AL549_RS13285 PF14552 Tautomerase enzyme AL549_RS13350 PF00043 Glutathione S-transferase, C-terminal domain AL549_RS13350 PF02798 Glutathione S-transferase, N-terminal domain AL549_RS13635 PF09905 DNA-binding protein VF530 AL549_RS13735 PF13302 Acetyltransferase (GNAT) domain AL549_RS14070 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AL549_RS14075 PF05016 ParE toxin of type II toxin-antitoxin system, parDE AL549_RS14150 PF13302 Acetyltransferase (GNAT) domain AL549_RS14225 PF13333 Integrase core domain AL549_RS14225 PF00665 Integrase core domain AL549_RS14225 PF13276 HTH-like domain AL549_RS14375 PF08378 Nuclease-related domain AL549_RS14485 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_RS14485 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_RS14585 PF06940 Domain of unknown function (DUF1287) AL549_RS14635 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS14730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_RS14955 PF01797 Transposase IS200 like AL549_RS15050 PF14552 Tautomerase enzyme AL549_RS15105 PF13302 Acetyltransferase (GNAT) domain AL549_RS15255 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system AL549_RS15260 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system AL549_RS15285 PF01810 LysE type translocator AL549_RS15325 PF13495 Phage integrase, N-terminal SAM-like domain AL549_RS15325 PF00589 Phage integrase family AL549_RS15330 PF00453 Ribosomal protein L20 AL549_RS15335 PF01632 Ribosomal protein L35 AL549_RS15340 PF05198 Translation initiation factor IF-3, N-terminal domain AL549_RS15340 PF00707 Translation initiation factor IF-3, C-terminal domain AL549_RS15345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL549_RS15345 PF02824 TGS domain AL549_RS15345 PF03129 Anticodon binding domain AL549_RS15345 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL549_RS15355 PF07070 SpoOM protein AL549_RS15360 PF07702 UTRA domain AL549_RS15360 PF00392 Bacterial regulatory proteins, gntR family AL549_RS15365 PF01979 Amidohydrolase family AL549_RS15370 PF00491 Arginase family AL549_RS15375 PF01175 Urocanase Rossmann-like domain AL549_RS15375 PF17391 Urocanase N-terminal domain AL549_RS15375 PF17392 Urocanase C-terminal domain AL549_RS15380 PF00221 Aromatic amino acid lyase AL549_RS15390 PF00089 Trypsin AL549_RS15400 PF02913 FAD linked oxidases, C-terminal domain AL549_RS15400 PF13183 4Fe-4S dicluster domain AL549_RS15400 PF01565 FAD binding domain AL549_RS15415 PF13488 Glycine zipper AL549_RS15415 PF00691 OmpA family AL549_RS15430 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AL549_RS15430 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL549_RS15435 PF02222 ATP-grasp domain AL549_RS15440 PF05724 Thiopurine S-methyltransferase (TPMT) AL549_RS15450 PF00216 Bacterial DNA-binding protein AL549_RS15465 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL549_RS15465 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL549_RS15470 PF03483 B3/4 domain AL549_RS15470 PF01588 Putative tRNA binding domain AL549_RS15470 PF03147 Ferredoxin-fold anticodon binding domain AL549_RS15470 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL549_RS15470 PF03484 tRNA synthetase B5 domain AL549_RS15475 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL549_RS15475 PF01409 tRNA synthetases class II core domain (F) AL549_RS15480 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS15480 PF00072 Response regulator receiver domain AL549_RS15535 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS15540 PF17944 Arginine decarboxylase C-terminal helical extension AL549_RS15540 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL549_RS15540 PF17810 Arginine decarboxylase helical bundle domain AL549_RS15545 PF00491 Arginase family AL549_RS15550 PF12729 Four helix bundle sensory module for signal transduction AL549_RS15550 PF00672 HAMP domain AL549_RS15550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS15565 PF07690 Major Facilitator Superfamily AL549_RS15575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS15575 PF06580 Histidine kinase AL549_RS15575 PF07694 5TMR of 5TMR-LYT AL549_RS15580 PF04397 LytTr DNA-binding domain AL549_RS15580 PF00072 Response regulator receiver domain AL549_RS15585 PF03280 Proteobacterial lipase chaperone protein AL549_RS15590 PF00561 alpha/beta hydrolase fold AL549_RS15615 PF04408 Helicase associated domain (HA2) AL549_RS15615 PF00270 DEAD/DEAH box helicase AL549_RS15615 PF11898 Domain of unknown function (DUF3418) AL549_RS15615 PF00271 Helicase conserved C-terminal domain AL549_RS15615 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL549_RS15630 PF02525 Flavodoxin-like fold AL549_RS15665 PF00437 Type II/IV secretion system protein AL549_RS15670 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL549_RS15680 PF04972 BON domain AL549_RS15680 PF13629 Pilus formation protein N terminal region AL549_RS15680 PF00263 Bacterial type II and III secretion system protein AL549_RS15730 PF17158 Membrane-associated sensor, integral membrane domain AL549_RS15730 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS15740 PF00012 Hsp70 protein AL549_RS15745 PF00012 Hsp70 protein AL549_RS15760 PF07883 Cupin domain AL549_RS15760 PF12833 Helix-turn-helix domain AL549_RS15775 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS15775 PF00563 EAL domain AL549_RS15775 PF03707 Bacterial signalling protein N terminal repeat AL549_RS15785 PF07963 Prokaryotic N-terminal methylation motif AL549_RS15800 PF13439 Glycosyltransferase Family 4 AL549_RS15800 PF00534 Glycosyl transferases group 1 AL549_RS15805 PF00534 Glycosyl transferases group 1 AL549_RS15805 PF13439 Glycosyltransferase Family 4 AL549_RS15825 PF13614 AAA domain AL549_RS15830 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL549_RS15830 PF10531 SLBB domain AL549_RS15830 PF02563 Polysaccharide biosynthesis/export protein AL549_RS15840 PF02397 Bacterial sugar transferase AL549_RS15845 PF01235 Sodium:alanine symporter family AL549_RS15850 PF00664 ABC transporter transmembrane region AL549_RS15850 PF00005 ABC transporter AL549_RS15855 PF00664 ABC transporter transmembrane region AL549_RS15855 PF00005 ABC transporter AL549_RS15870 PF00210 Ferritin-like domain AL549_RS15875 PF00072 Response regulator receiver domain AL549_RS15880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_RS15885 PF03222 Tryptophan/tyrosine permease family AL549_RS15890 PF00781 Diacylglycerol kinase catalytic domain AL549_RS15900 PF01734 Patatin-like phospholipase AL549_RS15905 PF01966 HD domain AL549_RS15920 PF03466 LysR substrate binding domain AL549_RS15920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS15925 PF04055 Radical SAM superfamily AL549_RS15930 PF11230 Protein of unknown function (DUF3029) AL549_RS15935 PF00563 EAL domain AL549_RS15935 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS15935 PF03707 Bacterial signalling protein N terminal repeat AL549_RS15935 PF13188 PAS domain AL549_RS15940 PF11871 Domain of unknown function (DUF3391) AL549_RS15940 PF01966 HD domain AL549_RS15950 PF00563 EAL domain AL549_RS15950 PF05231 MASE1 AL549_RS15955 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS15955 PF17158 Membrane-associated sensor, integral membrane domain AL549_RS15965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS15965 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_RS15965 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS15970 PF00939 Sodium:sulfate symporter transmembrane region AL549_RS15985 PF13302 Acetyltransferase (GNAT) domain AL549_RS15990 PF18024 Helix-turn-helix domain AL549_RS15990 PF13188 PAS domain AL549_RS15990 PF00158 Sigma-54 interaction domain AL549_RS15995 PF05128 Domain of unknown function (DUF697) AL549_RS16000 PF04317 YcjX-like family, DUF463 AL549_RS16015 PF04715 Anthranilate synthase component I, N terminal region AL549_RS16015 PF00425 chorismate binding enzyme AL549_RS16025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS16025 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS16025 PF00072 Response regulator receiver domain AL549_RS16025 PF09308 LuxQ, periplasmic AL549_RS16035 PF00293 NUDIX domain AL549_RS16040 PF03222 Tryptophan/tyrosine permease family AL549_RS16045 PF03313 Serine dehydratase alpha chain AL549_RS16045 PF03315 Serine dehydratase beta chain AL549_RS16050 PF04940 Sensors of blue-light using FAD AL549_RS16050 PF00563 EAL domain AL549_RS16060 PF01242 6-pyruvoyl tetrahydropterin synthase AL549_RS16065 PF00672 HAMP domain AL549_RS16065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS16065 PF17200 Single Cache domain 2 AL549_RS16070 PF01336 OB-fold nucleic acid binding domain AL549_RS16070 PF00152 tRNA synthetases class II (D, K and N) AL549_RS16080 PF00392 Bacterial regulatory proteins, gntR family AL549_RS16080 PF00155 Aminotransferase class I and II AL549_RS16095 PF01966 HD domain AL549_RS16095 PF00672 HAMP domain AL549_RS16100 PF00155 Aminotransferase class I and II AL549_RS16120 PF00672 HAMP domain AL549_RS16120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS16120 PF02743 Cache domain AL549_RS16125 PF02028 BCCT, betaine/carnitine/choline family transporter AL549_RS16130 PF01047 MarR family AL549_RS16135 PF00072 Response regulator receiver domain AL549_RS16135 PF00196 Bacterial regulatory proteins, luxR family AL549_RS16140 PF07730 Histidine kinase AL549_RS16140 PF17200 Single Cache domain 2 AL549_RS16145 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL549_RS16155 PF03480 Bacterial extracellular solute-binding protein, family 7 AL549_RS16160 PF13006 Insertion element 4 transposase N-terminal AL549_RS16160 PF01609 Transposase DDE domain AL549_RS16165 PF00925 GTP cyclohydrolase II AL549_RS16170 PF13006 Insertion element 4 transposase N-terminal AL549_RS16170 PF01609 Transposase DDE domain AL549_RS16175 PF00392 Bacterial regulatory proteins, gntR family AL549_RS16175 PF07840 FadR C-terminal domain AL549_RS16180 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AL549_RS16185 PF02600 Disulfide bond formation protein DsbB AL549_RS16190 PF01043 SecA preprotein cross-linking domain AL549_RS16190 PF02810 SEC-C motif AL549_RS16190 PF07516 SecA Wing and Scaffold domain AL549_RS16190 PF07517 SecA DEAD-like domain AL549_RS16195 PF01207 Dihydrouridine synthase (Dus) AL549_RS16200 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS16200 PF00072 Response regulator receiver domain AL549_RS16205 PF02903 Alpha amylase, N-terminal ig-like domain AL549_RS16205 PF00128 Alpha amylase, catalytic domain AL549_RS16210 PF00005 ABC transporter AL549_RS16215 PF02653 Branched-chain amino acid transport system / permease component AL549_RS16225 PF04217 Protein of unknown function, DUF412 AL549_RS16230 PF00871 Acetokinase family AL549_RS16235 PF07085 DRTGG domain AL549_RS16235 PF01515 Phosphate acetyl/butaryl transferase AL549_RS16240 PF08267 Cobalamin-independent synthase, N-terminal domain AL549_RS16240 PF01717 Cobalamin-independent synthase, Catalytic domain AL549_RS16245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS16245 PF03466 LysR substrate binding domain AL549_RS16260 PF00563 EAL domain AL549_RS16260 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS16260 PF03707 Bacterial signalling protein N terminal repeat AL549_RS16265 PF03707 Bacterial signalling protein N terminal repeat AL549_RS16265 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS16265 PF00563 EAL domain AL549_RS16270 PF08497 Radical SAM N-terminal AL549_RS16270 PF04055 Radical SAM superfamily AL549_RS16270 PF11842 Domain of unknown function (DUF3362) AL549_RS16275 PF03707 Bacterial signalling protein N terminal repeat AL549_RS16275 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS16275 PF00563 EAL domain AL549_RS16285 PF01740 STAS domain AL549_RS16285 PF00916 Sulfate permease family AL549_RS16290 PF12833 Helix-turn-helix domain AL549_RS16290 PF02311 AraC-like ligand binding domain AL549_RS16310 PF03741 Integral membrane protein TerC family AL549_RS16315 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_RS16315 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_RS16320 PF02743 Cache domain AL549_RS16320 PF00672 HAMP domain AL549_RS16320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS16325 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS16340 PF04229 GrpB protein AL549_RS16385 PF06610 L-alanine exporter AL549_RS16390 PF09308 LuxQ, periplasmic AL549_RS16390 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS16390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS16390 PF00072 Response regulator receiver domain AL549_RS16400 PF03738 Glutathionylspermidine synthase preATP-grasp AL549_RS16410 PF03994 Domain of Unknown Function (DUF350) AL549_RS16420 PF02445 Quinolinate synthetase A protein AL549_RS16425 PF16331 TolA binding protein trimerisation AL549_RS16425 PF13174 Tetratricopeptide repeat AL549_RS16430 PF00691 OmpA family AL549_RS16435 PF04052 TolB amino-terminal domain AL549_RS16435 PF07676 WD40-like Beta Propeller Repeat AL549_RS16445 PF02472 Biopolymer transport protein ExbD/TolR AL549_RS16450 PF01618 MotA/TolQ/ExbB proton channel family AL549_RS16455 PF03061 Thioesterase superfamily AL549_RS16465 PF08173 Membrane bound YbgT-like protein AL549_RS16470 PF02322 Cytochrome bd terminal oxidase subunit II AL549_RS16475 PF01654 Cytochrome bd terminal oxidase subunit I AL549_RS16480 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL549_RS16480 PF05491 RuvB C-terminal winged helix domain AL549_RS16480 PF17864 RuvB AAA lid domain AL549_RS16485 PF07499 RuvA, C-terminal domain AL549_RS16485 PF01330 RuvA N terminal domain AL549_RS16490 PF00672 HAMP domain AL549_RS16490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS16490 PF02203 Tar ligand binding domain homologue AL549_RS16495 PF02075 Crossover junction endodeoxyribonuclease RuvC AL549_RS16500 PF00152 tRNA synthetases class II (D, K and N) AL549_RS16500 PF02938 GAD domain AL549_RS16500 PF01336 OB-fold nucleic acid binding domain AL549_RS16510 PF13649 Methyltransferase domain AL549_RS16515 PF08003 Protein of unknown function (DUF1698) AL549_RS16520 PF18030 RimK PreATP-grasp domain AL549_RS16520 PF08443 RimK-like ATP-grasp domain AL549_RS16535 PF00732 GMC oxidoreductase AL549_RS16535 PF05199 GMC oxidoreductase AL549_RS16540 PF00171 Aldehyde dehydrogenase family AL549_RS16545 PF12833 Helix-turn-helix domain AL549_RS16545 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AL549_RS16550 PF04310 MukB N-terminal AL549_RS16550 PF16330 MukB hinge domain AL549_RS16555 PF04288 MukE-like family AL549_RS16560 PF03882 MukF winged-helix domain AL549_RS16560 PF17193 MukF C-terminal domain AL549_RS16560 PF17192 MukF middle domain AL549_RS16565 PF13847 Methyltransferase domain AL549_RS16570 PF02698 DUF218 domain AL549_RS16575 PF00072 Response regulator receiver domain AL549_RS16575 PF00486 Transcriptional regulatory protein, C terminal AL549_RS16580 PF02613 Nitrate reductase delta subunit AL549_RS16585 PF00356 Bacterial regulatory proteins, lacI family AL549_RS16590 PF04994 TfoX C-terminal domain AL549_RS16590 PF04993 TfoX N-terminal domain AL549_RS16605 PF00561 alpha/beta hydrolase fold AL549_RS16610 PF00534 Glycosyl transferases group 1 AL549_RS16610 PF08323 Starch synthase catalytic domain AL549_RS16615 PF00483 Nucleotidyl transferase AL549_RS16625 PF01131 DNA topoisomerase AL549_RS16625 PF01751 Toprim domain AL549_RS16625 PF01396 Topoisomerase DNA binding C4 zinc finger AL549_RS16625 PF08272 Topoisomerase I zinc-ribbon-like AL549_RS16630 PF10692 Protein of unknown function (DUF2498) AL549_RS16635 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL549_RS16645 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AL549_RS16650 PF04376 Arginine-tRNA-protein transferase, N terminus AL549_RS16650 PF04377 Arginine-tRNA-protein transferase, C terminus AL549_RS16655 PF01176 Translation initiation factor 1A / IF-1 AL549_RS16660 PF10431 C-terminal, D2-small domain, of ClpB protein AL549_RS16660 PF00004 ATPase family associated with various cellular activities (AAA) AL549_RS16660 PF07724 AAA domain (Cdc48 subfamily) AL549_RS16660 PF17871 AAA lid domain AL549_RS16660 PF02861 Clp amino terminal domain, pathogenicity island component AL549_RS16665 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL549_RS16670 PF00313 'Cold-shock' DNA-binding domain AL549_RS16675 PF03971 Monomeric isocitrate dehydrogenase AL549_RS16680 PF00849 RNA pseudouridylate synthase AL549_RS16685 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AL549_RS16690 PF13609 Gram-negative porin AL549_RS16695 PF13307 Helicase C-terminal domain AL549_RS16695 PF06733 DEAD_2 AL549_RS16700 PF01925 Sulfite exporter TauE/SafE AL549_RS16705 PF07445 Primosomal replication protein priC AL549_RS16710 PF10689 Protein of unknown function (DUF2496) AL549_RS16715 PF00672 HAMP domain AL549_RS16715 PF02743 Cache domain AL549_RS16715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS16720 PF03372 Endonuclease/Exonuclease/phosphatase family AL549_RS16730 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS16735 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS16740 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_RS16745 PF00005 ABC transporter AL549_RS16760 PF01228 Glycine radical AL549_RS16760 PF02901 Pyruvate formate lyase-like AL549_RS16770 PF00672 HAMP domain AL549_RS16770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS16775 PF04055 Radical SAM superfamily AL549_RS16785 PF03887 YfbU domain AL549_RS16790 PF06798 PrkA serine protein kinase C-terminal domain AL549_RS16790 PF08298 PrkA AAA domain AL549_RS16795 PF04285 Protein of unknown function (DUF444) AL549_RS16800 PF04293 SpoVR like protein AL549_RS16805 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS16805 PF17155 Gammaproteobacterial periplasmic sensor domain AL549_RS16810 PF02348 Cytidylyltransferase AL549_RS16815 PF03966 Trm112p-like protein AL549_RS16820 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AL549_RS16825 PF00664 ABC transporter transmembrane region AL549_RS16825 PF00005 ABC transporter AL549_RS16830 PF13567 Domain of unknown function (DUF4131) AL549_RS16830 PF03772 Competence protein AL549_RS16830 PF00753 Metallo-beta-lactamase superfamily AL549_RS16840 PF02687 FtsX-like permease family AL549_RS16840 PF12704 MacB-like periplasmic core domain AL549_RS16845 PF00005 ABC transporter AL549_RS16850 PF12704 MacB-like periplasmic core domain AL549_RS16850 PF02687 FtsX-like permease family AL549_RS16860 PF17757 UvrB interaction domain AL549_RS16860 PF03461 TRCF domain AL549_RS16860 PF00271 Helicase conserved C-terminal domain AL549_RS16860 PF02559 CarD-like/TRCF domain AL549_RS16860 PF00270 DEAD/DEAH box helicase AL549_RS16875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS16880 PF05728 Uncharacterised protein family (UPF0227) AL549_RS16890 PF13036 Peptidoglycan-synthase activator LpoB AL549_RS16890 PF08139 Prokaryotic membrane lipoprotein lipid attachment site AL549_RS16905 PF01230 HIT domain AL549_RS16910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS16910 PF00672 HAMP domain AL549_RS16920 PF01048 Phosphorylase superfamily AL549_RS16925 PF00403 Heavy-metal-associated domain AL549_RS16930 PF00571 CBS domain AL549_RS16930 PF01743 Poly A polymerase head domain AL549_RS16935 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS16940 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL549_RS16940 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL549_RS16940 PF01276 Orn/Lys/Arg decarboxylase, major domain AL549_RS16945 PF13520 Amino acid permease AL549_RS16950 PF18500 CadC C-terminal domain 1 AL549_RS16950 PF00486 Transcriptional regulatory protein, C terminal AL549_RS16960 PF00672 HAMP domain AL549_RS16960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS16960 PF02743 Cache domain AL549_RS16970 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS16975 PF03448 MgtE intracellular N domain AL549_RS16975 PF01769 Divalent cation transporter AL549_RS16975 PF00571 CBS domain AL549_RS17010 PF13676 TIR domain AL549_RS17015 PF02899 Phage integrase, N-terminal SAM-like domain AL549_RS17015 PF00589 Phage integrase family AL549_RS17060 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL549_RS17060 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL549_RS17065 PF13847 Methyltransferase domain AL549_RS17080 PF00245 Alkaline phosphatase AL549_RS17090 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL549_RS17100 PF03692 Putative zinc- or iron-chelating domain AL549_RS17105 PF03692 Putative zinc- or iron-chelating domain AL549_RS17110 PF00230 Major intrinsic protein AL549_RS17115 PF00486 Transcriptional regulatory protein, C terminal AL549_RS17115 PF00072 Response regulator receiver domain AL549_RS17120 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS17120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS17120 PF00672 HAMP domain AL549_RS17135 PF13662 Toprim domain AL549_RS17135 PF02132 RecR protein AL549_RS17140 PF02575 YbaB/EbfC DNA-binding family AL549_RS17145 PF12170 DNA polymerase III tau subunit V interacting with alpha AL549_RS17145 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AL549_RS17145 PF12169 DNA polymerase III subunits gamma and tau domain III AL549_RS17150 PF00156 Phosphoribosyl transferase domain AL549_RS17155 PF04304 Protein of unknown function (DUF454) AL549_RS17165 PF00072 Response regulator receiver domain AL549_RS17170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS17170 PF03466 LysR substrate binding domain AL549_RS17175 PF00156 Phosphoribosyl transferase domain AL549_RS17180 PF02674 Colicin V production protein AL549_RS17185 PF05036 Sporulation related domain AL549_RS17190 PF02875 Mur ligase family, glutamate ligase domain AL549_RS17190 PF08245 Mur ligase middle domain AL549_RS17195 PF01039 Carboxyl transferase domain AL549_RS17195 PF17848 Acetyl-coA carboxylase zinc finger domain AL549_RS17200 PF01416 tRNA pseudouridine synthase AL549_RS17210 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL549_RS17210 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL549_RS17215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_RS17215 PF11890 Domain of unknown function (DUF3410) AL549_RS17215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_RS17220 PF00109 Beta-ketoacyl synthase, N-terminal domain AL549_RS17220 PF02801 Beta-ketoacyl synthase, C-terminal domain AL549_RS17225 PF01266 FAD dependent oxidoreductase AL549_RS17225 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AL549_RS17230 PF08891 YfcL protein AL549_RS17235 PF04315 Elongation factor P hydroxylase AL549_RS17240 PF03458 UPF0126 domain AL549_RS17245 PF01264 Chorismate synthase AL549_RS17250 PF05175 Methyltransferase small domain AL549_RS17255 PF01713 Smr domain AL549_RS17260 PF00300 Histidine phosphatase superfamily (branch 1) AL549_RS17270 PF00675 Insulinase (Peptidase family M16) AL549_RS17270 PF05193 Peptidase M16 inactive domain AL549_RS17275 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL549_RS17275 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL549_RS17275 PF00378 Enoyl-CoA hydratase/isomerase AL549_RS17280 PF02803 Thiolase, C-terminal domain AL549_RS17280 PF00108 Thiolase, N-terminal domain AL549_RS17285 PF08281 Sigma-70, region 4 AL549_RS17285 PF04542 Sigma-70 region 2 AL549_RS17295 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL549_RS17300 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AL549_RS17305 PF04333 MlaA lipoprotein AL549_RS17310 PF03918 Cytochrome C biogenesis protein AL549_RS17315 PF03918 Cytochrome C biogenesis protein AL549_RS17320 PF08534 Redoxin AL549_RS17325 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AL549_RS17325 PF01578 Cytochrome C assembly protein AL549_RS17330 PF03100 CcmE AL549_RS17335 PF04995 Heme exporter protein D (CcmD) AL549_RS17340 PF01578 Cytochrome C assembly protein AL549_RS17345 PF03379 CcmB protein AL549_RS17350 PF00005 ABC transporter AL549_RS17360 PF01584 CheW-like domain AL549_RS17370 PF13614 AAA domain AL549_RS17375 PF00072 Response regulator receiver domain AL549_RS17375 PF01339 CheB methylesterase AL549_RS17380 PF01584 CheW-like domain AL549_RS17380 PF02895 Signal transducing histidine kinase, homodimeric domain AL549_RS17380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS17380 PF01627 Hpt domain AL549_RS17380 PF00072 Response regulator receiver domain AL549_RS17385 PF04344 Chemotaxis phosphatase, CheZ AL549_RS17390 PF00072 Response regulator receiver domain AL549_RS17395 PF04542 Sigma-70 region 2 AL549_RS17395 PF04539 Sigma-70 region 3 AL549_RS17395 PF04545 Sigma-70, region 4 AL549_RS17400 PF10609 NUBPL iron-transfer P-loop NTPase AL549_RS17405 PF00448 SRP54-type protein, GTPase domain AL549_RS17410 PF00771 FHIPEP family AL549_RS17415 PF01312 FlhB HrpN YscU SpaS Family AL549_RS17420 PF01311 Bacterial export proteins, family 1 AL549_RS17425 PF01313 Bacterial export proteins, family 3 AL549_RS17430 PF00813 FliP family AL549_RS17435 PF04347 Flagellar biosynthesis protein, FliO AL549_RS17440 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL549_RS17445 PF02154 Flagellar motor switch protein FliM AL549_RS17445 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL549_RS17465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL549_RS17465 PF18269 T3SS EscN ATPase C-terminal domain AL549_RS17475 PF01706 FliG C-terminal domain AL549_RS17475 PF14842 FliG N-terminal domain AL549_RS17475 PF14841 FliG middle domain AL549_RS17480 PF08345 Flagellar M-ring protein C-terminal AL549_RS17480 PF01514 Secretory protein of YscJ/FliF family AL549_RS17485 PF02049 Flagellar hook-basal body complex protein FliE AL549_RS17490 PF02954 Bacterial regulatory protein, Fis family AL549_RS17490 PF00072 Response regulator receiver domain AL549_RS17490 PF00158 Sigma-54 interaction domain AL549_RS17495 PF13188 PAS domain AL549_RS17495 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS17495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS17500 PF06490 Flagellar regulatory protein FleQ AL549_RS17500 PF02954 Bacterial regulatory protein, Fis family AL549_RS17500 PF00158 Sigma-54 interaction domain AL549_RS17505 PF02561 Flagellar protein FliS AL549_RS17515 PF07195 Flagellar hook-associated protein 2 C-terminus AL549_RS17515 PF02465 Flagellar hook-associated protein 2 N-terminus AL549_RS17515 PF07196 Flagellin hook IN motif AL549_RS17520 PF03646 FlaG protein AL549_RS17525 PF07196 Flagellin hook IN motif AL549_RS17525 PF00669 Bacterial flagellin N-terminal helical region AL549_RS17525 PF00700 Bacterial flagellin C-terminal helical region AL549_RS17530 PF00669 Bacterial flagellin N-terminal helical region AL549_RS17530 PF07196 Flagellin hook IN motif AL549_RS17530 PF00700 Bacterial flagellin C-terminal helical region AL549_RS17535 PF00669 Bacterial flagellin N-terminal helical region AL549_RS17535 PF07196 Flagellin hook IN motif AL549_RS17535 PF00700 Bacterial flagellin C-terminal helical region AL549_RS17540 PF04261 Dyp-type peroxidase family AL549_RS17565 PF03960 ArsC family AL549_RS17570 PF01546 Peptidase family M20/M25/M40 AL549_RS17570 PF07687 Peptidase dimerisation domain AL549_RS17585 PF01609 Transposase DDE domain AL549_RS17585 PF13006 Insertion element 4 transposase N-terminal AL549_RS17590 PF06804 NlpB/DapX lipoprotein AL549_RS17595 PF00701 Dihydrodipicolinate synthetase family AL549_RS17600 PF01842 ACT domain AL549_RS17605 PF00578 AhpC/TSA family AL549_RS17610 PF01594 AI-2E family transporter AL549_RS17620 PF01435 Peptidase family M48 AL549_RS17620 PF13181 Tetratricopeptide repeat AL549_RS17625 PF03960 ArsC family AL549_RS17630 PF03358 NADPH-dependent FMN reductase AL549_RS17645 PF00860 Permease family AL549_RS17655 PF02769 AIR synthase related protein, C-terminal domain AL549_RS17655 PF00586 AIR synthase related protein, N-terminal domain AL549_RS17660 PF00551 Formyl transferase AL549_RS17665 PF13230 Glutamine amidotransferases class-II AL549_RS17670 PF13580 SIS domain AL549_RS17675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL549_RS17675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL549_RS17675 PF09317 Domain of unknown function (DUF1974) AL549_RS17675 PF02770 Acyl-CoA dehydrogenase, middle domain AL549_RS17695 PF00999 Sodium/hydrogen exchanger family AL549_RS17695 PF02254 TrkA-N domain AL549_RS17700 PF02525 Flavodoxin-like fold AL549_RS17710 PF00929 Exonuclease AL549_RS17715 PF00075 RNase H AL549_RS17720 PF08241 Methyltransferase domain AL549_RS17725 PF00753 Metallo-beta-lactamase superfamily AL549_RS17725 PF16123 Hydroxyacylglutathione hydrolase C-terminus AL549_RS17730 PF01464 Transglycosylase SLT domain AL549_RS17730 PF01476 LysM domain AL549_RS17740 PF03372 Endonuclease/Exonuclease/phosphatase family AL549_RS17745 PF00543 Nitrogen regulatory protein P-II AL549_RS17750 PF00034 Cytochrome c AL549_RS17755 PF09179 TilS substrate binding domain AL549_RS17755 PF01171 PP-loop family AL549_RS17755 PF11734 TilS substrate C-terminal domain AL549_RS17760 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL549_RS17765 PF01336 OB-fold nucleic acid binding domain AL549_RS17765 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL549_RS17765 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL549_RS17765 PF14579 Helix-hairpin-helix motif AL549_RS17765 PF02811 PHP domain AL549_RS17770 PF01351 Ribonuclease HII AL549_RS17775 PF02684 Lipid-A-disaccharide synthetase AL549_RS17780 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL549_RS17780 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS17785 PF07977 FabA-like domain AL549_RS17790 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL549_RS17790 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS17795 PF03938 Outer membrane protein (OmpH-like) AL549_RS17800 PF07244 Surface antigen variable number repeat AL549_RS17800 PF01103 Surface antigen AL549_RS17810 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL549_RS17810 PF13288 DXP reductoisomerase C-terminal domain AL549_RS17810 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL549_RS17820 PF01255 Putative undecaprenyl diphosphate synthase AL549_RS17825 PF01765 Ribosome recycling factor AL549_RS17830 PF00696 Amino acid kinase family AL549_RS17835 PF00889 Elongation factor TS AL549_RS17840 PF00318 Ribosomal protein S2 AL549_RS17845 PF00557 Metallopeptidase family M24 AL549_RS17850 PF01909 Nucleotidyltransferase domain AL549_RS17850 PF01966 HD domain AL549_RS17850 PF08335 GlnD PII-uridylyltransferase AL549_RS17855 PF11944 Protein of unknown function (DUF3461) AL549_RS17860 PF00849 RNA pseudouridylate synthase AL549_RS17865 PF04287 tRNA pseudouridine synthase C AL549_RS17895 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AL549_RS17905 PF01370 NAD dependent epimerase/dehydratase family AL549_RS17925 PF03806 AbgT putative transporter family AL549_RS17930 PF00444 Ribosomal protein L36 AL549_RS17935 PF01197 Ribosomal protein L31 AL549_RS17940 PF18389 TrmO C-terminal domain AL549_RS17940 PF01980 tRNA-methyltransferase O AL549_RS17945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL549_RS17945 PF03129 Anticodon binding domain AL549_RS17945 PF04073 Aminoacyl-tRNA editing domain AL549_RS17955 PF06786 Uncharacterised protein family (UPF0253) AL549_RS17965 PF00209 Sodium:neurotransmitter symporter family AL549_RS17970 PF00704 Glycosyl hydrolases family 18 AL549_RS17970 PF00041 Fibronectin type III domain AL549_RS17980 PF09382 RQC domain AL549_RS17980 PF16124 RecQ zinc-binding AL549_RS17980 PF00570 HRDC domain AL549_RS17980 PF00271 Helicase conserved C-terminal domain AL549_RS17980 PF00270 DEAD/DEAH box helicase AL549_RS17985 PF11799 impB/mucB/samB family C-terminal domain AL549_RS17985 PF00817 impB/mucB/samB family AL549_RS17990 PF00072 Response regulator receiver domain AL549_RS17990 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS18000 PF02424 ApbE family AL549_RS18005 PF00175 Oxidoreductase NAD-binding domain AL549_RS18005 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_RS18005 PF00970 Oxidoreductase FAD-binding domain AL549_RS18010 PF02508 Rnf-Nqr subunit, membrane protein AL549_RS18015 PF02508 Rnf-Nqr subunit, membrane protein AL549_RS18020 PF04205 FMN-binding domain AL549_RS18025 PF03116 NQR2, RnfD, RnfE family AL549_RS18030 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AL549_RS18030 PF11973 NQRA C-terminal domain AL549_RS18035 PF01722 BolA-like protein AL549_RS18040 PF05175 Methyltransferase small domain AL549_RS18050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL549_RS18055 PF07690 Major Facilitator Superfamily AL549_RS18065 PF04542 Sigma-70 region 2 AL549_RS18065 PF04545 Sigma-70, region 4 AL549_RS18075 PF03502 Nucleoside-specific channel-forming protein, Tsx AL549_RS18080 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL549_RS18080 PF02558 Ketopantoate reductase PanE/ApbA AL549_RS18085 PF01965 DJ-1/PfpI family AL549_RS18090 PF00266 Aminotransferase class-V AL549_RS18095 PF02657 Fe-S metabolism associated domain AL549_RS18100 PF00899 ThiF family AL549_RS18105 PF03562 MltA specific insert domain AL549_RS18105 PF06725 3D domain AL549_RS18115 PF00696 Amino acid kinase family AL549_RS18115 PF00583 Acetyltransferase (GNAT) family AL549_RS18125 PF13538 UvrD-like helicase C-terminal domain AL549_RS18130 PF12705 PD-(D/E)XK nuclease superfamily AL549_RS18130 PF00580 UvrD/REP helicase N-terminal domain AL549_RS18130 PF13361 UvrD-like helicase C-terminal domain AL549_RS18135 PF17946 RecC C-terminal domain AL549_RS18140 PF11893 Domain of unknown function (DUF3413) AL549_RS18140 PF00884 Sulfatase AL549_RS18150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS18150 PF03466 LysR substrate binding domain AL549_RS18155 PF07130 YebG protein AL549_RS18160 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AL549_RS18160 PF14602 Hexapeptide repeat of succinyl-transferase AL549_RS18165 PF00230 Major intrinsic protein AL549_RS18170 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL549_RS18170 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL549_RS18175 PF08220 DeoR-like helix-turn-helix domain AL549_RS18175 PF00455 DeoR C terminal sensor domain AL549_RS18180 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL549_RS18180 PF01266 FAD dependent oxidoreductase AL549_RS18185 PF01544 CorA-like Mg2+ transporter protein AL549_RS18195 PF18030 RimK PreATP-grasp domain AL549_RS18195 PF02080 TrkA-C domain AL549_RS18195 PF08443 RimK-like ATP-grasp domain AL549_RS18215 PF01588 Putative tRNA binding domain AL549_RS18220 PF00356 Bacterial regulatory proteins, lacI family AL549_RS18225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS18225 PF00672 HAMP domain AL549_RS18225 PF17200 Single Cache domain 2 AL549_RS18230 PF01263 Aldose 1-epimerase AL549_RS18235 PF10509 Galactokinase galactose-binding signature AL549_RS18235 PF00288 GHMP kinases N terminal domain AL549_RS18235 PF08544 GHMP kinases C terminal AL549_RS18240 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AL549_RS18240 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AL549_RS18245 PF16363 GDP-mannose 4,6 dehydratase AL549_RS18250 PF00356 Bacterial regulatory proteins, lacI family AL549_RS18260 PF16353 Domain of unknown function(DUF4981) AL549_RS18260 PF02929 Beta galactosidase small chain AL549_RS18260 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AL549_RS18260 PF02837 Glycosyl hydrolases family 2, sugar binding domain AL549_RS18260 PF00703 Glycosyl hydrolases family 2 AL549_RS18265 PF04074 YhcH/YjgK/YiaL AL549_RS18270 PF13520 Amino acid permease AL549_RS18275 PF13520 Amino acid permease AL549_RS18280 PF01204 Trehalase AL549_RS18290 PF03466 LysR substrate binding domain AL549_RS18290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS18295 PF02417 Chromate transporter AL549_RS18315 PF00437 Type II/IV secretion system protein AL549_RS18345 PF00263 Bacterial type II and III secretion system protein AL549_RS18345 PF13629 Pilus formation protein N terminal region AL549_RS18345 PF04972 BON domain AL549_RS18375 PF12833 Helix-turn-helix domain AL549_RS18375 PF02311 AraC-like ligand binding domain AL549_RS18380 PF00501 AMP-binding enzyme AL549_RS18390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS18390 PF03466 LysR substrate binding domain AL549_RS18395 PF00679 Elongation factor G C-terminus AL549_RS18395 PF14492 Elongation Factor G, domain II AL549_RS18395 PF03764 Elongation factor G, domain IV AL549_RS18395 PF00009 Elongation factor Tu GTP binding domain AL549_RS18395 PF03144 Elongation factor Tu domain 2 AL549_RS18410 PF08447 PAS fold AL549_RS18410 PF05231 MASE1 AL549_RS18410 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS18410 PF00563 EAL domain AL549_RS18410 PF08448 PAS fold AL549_RS18410 PF13426 PAS domain AL549_RS18415 PF18073 Rubredoxin metal binding domain AL549_RS18425 PF18429 Domain of unknown function (DUF5609) AL549_RS18435 PF01048 Phosphorylase superfamily AL549_RS18440 PF01676 Metalloenzyme superfamily AL549_RS18445 PF02885 Glycosyl transferase family, helical bundle domain AL549_RS18445 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AL549_RS18445 PF00591 Glycosyl transferase family, a/b domain AL549_RS18450 PF01791 DeoC/LacD family aldolase AL549_RS18455 PF07662 Na+ dependent nucleoside transporter C-terminus AL549_RS18455 PF01773 Na+ dependent nucleoside transporter N-terminus AL549_RS18455 PF07670 Nucleoside recognition AL549_RS18460 PF01026 TatD related DNase AL549_RS18465 PF00009 Elongation factor Tu GTP binding domain AL549_RS18465 PF03144 Elongation factor Tu domain 2 AL549_RS18465 PF16658 Class II release factor RF3, C-terminal domain AL549_RS18470 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS18470 PF08448 PAS fold AL549_RS18475 PF03707 Bacterial signalling protein N terminal repeat AL549_RS18475 PF00563 EAL domain AL549_RS18475 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS18480 PF00583 Acetyltransferase (GNAT) family AL549_RS18490 PF13508 Acetyltransferase (GNAT) domain AL549_RS18495 PF02036 SCP-2 sterol transfer family AL549_RS18500 PF03707 Bacterial signalling protein N terminal repeat AL549_RS18500 PF00563 EAL domain AL549_RS18500 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS18505 PF01136 Peptidase family U32 AL549_RS18510 PF01136 Peptidase family U32 AL549_RS18515 PF01554 MatE AL549_RS18525 PF07719 Tetratricopeptide repeat AL549_RS18525 PF13181 Tetratricopeptide repeat AL549_RS18530 PF00013 KH domain AL549_RS18530 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL549_RS18530 PF01138 3' exoribonuclease family, domain 1 AL549_RS18530 PF03725 3' exoribonuclease family, domain 2 AL549_RS18530 PF00575 S1 RNA binding domain AL549_RS18555 PF00312 Ribosomal protein S15 AL549_RS18560 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL549_RS18560 PF09157 Pseudouridine synthase II TruB, C-terminal AL549_RS18560 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL549_RS18565 PF02033 Ribosome-binding factor A AL549_RS18570 PF04760 Translation initiation factor IF-2, N-terminal region AL549_RS18570 PF00009 Elongation factor Tu GTP binding domain AL549_RS18570 PF11987 Translation-initiation factor 2 AL549_RS18570 PF08364 Bacterial translation initiation factor IF-2 associated region AL549_RS18575 PF13184 NusA-like KH domain AL549_RS18575 PF08529 NusA N-terminal domain AL549_RS18575 PF00575 S1 RNA binding domain AL549_RS18580 PF17384 RimP C-terminal SH3 domain AL549_RS18580 PF02576 RimP N-terminal domain AL549_RS18595 PF03840 Preprotein translocase SecG subunit AL549_RS18600 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL549_RS18600 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL549_RS18600 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL549_RS18600 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL549_RS18605 PF00809 Pterin binding enzyme AL549_RS18610 PF06480 FtsH Extracellular AL549_RS18610 PF00004 ATPase family associated with various cellular activities (AAA) AL549_RS18610 PF17862 AAA+ lid domain AL549_RS18610 PF01434 Peptidase family M41 AL549_RS18615 PF01728 FtsJ-like methyltransferase AL549_RS18620 PF01985 CRS1 / YhbY (CRM) domain AL549_RS18625 PF01272 Transcription elongation factor, GreA/GreB, C-term AL549_RS18625 PF03449 Transcription elongation factor, N-terminal AL549_RS18635 PF13609 Gram-negative porin AL549_RS18640 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL549_RS18645 PF04304 Protein of unknown function (DUF454) AL549_RS18650 PF00579 tRNA synthetases class I (W and Y) AL549_RS18655 PF01551 Peptidase family M23 AL549_RS18655 PF04225 Opacity-associated protein A LysM-like domain AL549_RS18660 PF00873 AcrB/AcrD/AcrF family AL549_RS18665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_RS18670 PF01521 Iron-sulphur cluster biosynthesis AL549_RS18675 PF00202 Aminotransferase class-III AL549_RS18680 PF01594 AI-2E family transporter AL549_RS18685 PF05175 Methyltransferase small domain AL549_RS18685 PF08468 Methyltransferase small domain N-terminal AL549_RS18690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS18690 PF00072 Response regulator receiver domain AL549_RS18690 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS18690 PF09308 LuxQ, periplasmic AL549_RS18695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_RS18700 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS18705 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_RS18705 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS18710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS18710 PF00005 ABC transporter AL549_RS18715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS18715 PF00005 ABC transporter AL549_RS18725 PF01869 BadF/BadG/BcrA/BcrD ATPase family AL549_RS18730 PF02838 Glycosyl hydrolase family 20, domain 2 AL549_RS18730 PF00728 Glycosyl hydrolase family 20, catalytic domain AL549_RS18735 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AL549_RS18735 PF06165 Glycosyltransferase family 36 AL549_RS18740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL549_RS18740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL549_RS18740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL549_RS18740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL549_RS18745 PF00005 ABC transporter AL549_RS18745 PF08402 TOBE domain AL549_RS18755 PF13416 Bacterial extracellular solute-binding protein AL549_RS18760 PF00909 Ammonium Transporter Family AL549_RS18765 PF00543 Nitrogen regulatory protein P-II AL549_RS18770 PF06062 Uncharacterised protein family (UPF0231) AL549_RS18775 PF13556 PucR C-terminal helix-turn-helix domain AL549_RS18775 PF17853 GGDEF-like domain AL549_RS18775 PF05651 Putative sugar diacid recognition AL549_RS18780 PF02447 GntP family permease AL549_RS18785 PF02595 Glycerate kinase family AL549_RS18790 PF11791 Aconitate B N-terminal domain AL549_RS18790 PF06434 Aconitate hydratase 2 N-terminus AL549_RS18790 PF00330 Aconitase family (aconitate hydratase) AL549_RS18795 PF01734 Patatin-like phospholipase AL549_RS18800 PF14814 Bifunctional transglycosylase second domain AL549_RS18800 PF00912 Transglycosylase AL549_RS18800 PF00905 Penicillin binding protein transpeptidase domain AL549_RS18805 PF08482 ATP-dependent helicase C-terminal AL549_RS18805 PF00271 Helicase conserved C-terminal domain AL549_RS18805 PF04408 Helicase associated domain (HA2) AL549_RS18805 PF00270 DEAD/DEAH box helicase AL549_RS18810 PF03749 Sugar fermentation stimulation protein RE domain AL549_RS18810 PF17746 SfsA N-terminal OB domain AL549_RS18815 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL549_RS18820 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL549_RS18825 PF01743 Poly A polymerase head domain AL549_RS18825 PF12627 Probable RNA and SrmB- binding site of polymerase A AL549_RS18825 PF12626 Polymerase A arginine-rich C-terminus AL549_RS18830 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL549_RS18835 PF02548 Ketopantoate hydroxymethyltransferase AL549_RS18840 PF02569 Pantoate-beta-alanine ligase AL549_RS18845 PF01061 ABC-2 type transporter AL549_RS18850 PF00005 ABC transporter AL549_RS18855 PF01740 STAS domain AL549_RS18855 PF00916 Sulfate permease family AL549_RS18860 PF00484 Carbonic anhydrase AL549_RS18865 PF00156 Phosphoribosyl transferase domain AL549_RS18870 PF00440 Bacterial regulatory proteins, tetR family AL549_RS18875 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS18875 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL549_RS18880 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL549_RS18880 PF02817 e3 binding domain AL549_RS18880 PF00364 Biotin-requiring enzyme AL549_RS18885 PF17831 Pyruvate dehydrogenase E1 component middle domain AL549_RS18885 PF00456 Transketolase, thiamine diphosphate binding domain AL549_RS18890 PF00392 Bacterial regulatory proteins, gntR family AL549_RS18890 PF07729 FCD domain AL549_RS18895 PF01510 N-acetylmuramoyl-L-alanine amidase AL549_RS18900 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL549_RS18900 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL549_RS18905 PF00114 Pilin (bacterial filament) AL549_RS18905 PF07963 Prokaryotic N-terminal methylation motif AL549_RS18910 PF00437 Type II/IV secretion system protein AL549_RS18910 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL549_RS18915 PF00482 Type II secretion system (T2SS), protein F AL549_RS18920 PF06750 Bacterial Peptidase A24 N-terminal domain AL549_RS18920 PF01478 Type IV leader peptidase family AL549_RS18925 PF01121 Dephospho-CoA kinase AL549_RS18930 PF07072 Cell division protein AL549_RS18935 PF03884 DNA gyrase inhibitor YacG AL549_RS18940 PF01245 Ribosomal protein L19 AL549_RS18945 PF01746 tRNA (Guanine-1)-methyltransferase AL549_RS18950 PF01782 RimM N-terminal domain AL549_RS18950 PF05239 PRC-barrel domain AL549_RS18955 PF00886 Ribosomal protein S16 AL549_RS18960 PF00448 SRP54-type protein, GTPase domain AL549_RS18960 PF02881 SRP54-type protein, helical bundle domain AL549_RS18960 PF02978 Signal peptide binding domain AL549_RS18965 PF01578 Cytochrome C assembly protein AL549_RS18970 PF00571 CBS domain AL549_RS18970 PF01595 Cyclin M transmembrane N-terminal domain AL549_RS18970 PF03471 Transporter associated domain AL549_RS18975 PF02664 S-Ribosylhomocysteinase (LuxS) AL549_RS18985 PF04262 Glutamate-cysteine ligase AL549_RS18990 PF00675 Insulinase (Peptidase family M16) AL549_RS18990 PF05193 Peptidase M16 inactive domain AL549_RS18995 PF09335 SNARE associated Golgi protein AL549_RS19000 PF08240 Alcohol dehydrogenase GroES-like domain AL549_RS19000 PF00107 Zinc-binding dehydrogenase AL549_RS19005 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AL549_RS19010 PF00364 Biotin-requiring enzyme AL549_RS19010 PF00682 HMGL-like AL549_RS19010 PF02436 Conserved carboxylase domain AL549_RS19015 PF04277 Oxaloacetate decarboxylase, gamma chain AL549_RS19060 PF02599 Global regulator protein family AL549_RS19065 PF13840 ACT domain AL549_RS19065 PF01842 ACT domain AL549_RS19065 PF00696 Amino acid kinase family AL549_RS19070 PF02272 DHHA1 domain AL549_RS19070 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL549_RS19070 PF01411 tRNA synthetases class II (A) AL549_RS19075 PF02631 RecX family AL549_RS19080 PF00154 recA bacterial DNA recombination protein AL549_RS19085 PF02464 Competence-damaged protein AL549_RS19090 PF01624 MutS domain I AL549_RS19090 PF05188 MutS domain II AL549_RS19090 PF05192 MutS domain III AL549_RS19090 PF00488 MutS domain V AL549_RS19090 PF05190 MutS family domain IV AL549_RS19095 PF04542 Sigma-70 region 2 AL549_RS19095 PF04539 Sigma-70 region 3 AL549_RS19095 PF00140 Sigma-70 factor, region 1.2 AL549_RS19095 PF04545 Sigma-70, region 4 AL549_RS19100 PF01476 LysM domain AL549_RS19100 PF01551 Peptidase family M23 AL549_RS19110 PF01975 Survival protein SurE AL549_RS19115 PF01142 tRNA pseudouridine synthase D (TruD) AL549_RS19120 PF02542 YgbB family AL549_RS19125 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL549_RS19130 PF04977 Septum formation initiator AL549_RS19135 PF00113 Enolase, C-terminal TIM barrel domain AL549_RS19135 PF03952 Enolase, N-terminal domain AL549_RS19140 PF06418 CTP synthase N-terminus AL549_RS19140 PF00117 Glutamine amidotransferase class-I AL549_RS19145 PF03819 MazG nucleotide pyrophosphohydrolase domain AL549_RS19150 PF02824 TGS domain AL549_RS19150 PF04607 Region found in RelA / SpoT proteins AL549_RS19150 PF13291 ACT domain AL549_RS19155 PF05958 tRNA (Uracil-5-)-methyltransferase AL549_RS19155 PF01938 TRAM domain AL549_RS19160 PF00072 Response regulator receiver domain AL549_RS19160 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS19160 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AL549_RS19160 PF01627 Hpt domain AL549_RS19160 PF00672 HAMP domain AL549_RS19160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS19165 PF03707 Bacterial signalling protein N terminal repeat AL549_RS19165 PF00563 EAL domain AL549_RS19165 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS19180 PF01648 4'-phosphopantetheinyl transferase superfamily AL549_RS19185 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL549_RS19190 PF02565 Recombination protein O C terminal AL549_RS19190 PF11967 Recombination protein O N terminal AL549_RS19195 PF07650 KH domain AL549_RS19195 PF01926 50S ribosome-binding GTPase AL549_RS19200 PF00035 Double-stranded RNA binding motif AL549_RS19200 PF14622 Ribonuclease-III-like AL549_RS19205 PF10502 Signal peptidase, peptidase S26 AL549_RS19210 PF06421 GTP-binding protein LepA C-terminus AL549_RS19210 PF00009 Elongation factor Tu GTP binding domain AL549_RS19210 PF00679 Elongation factor G C-terminus AL549_RS19210 PF03144 Elongation factor Tu domain 2 AL549_RS19220 PF17188 MucB/RseB C-terminal domain AL549_RS19220 PF03888 MucB/RseB N-terminal domain AL549_RS19225 PF03872 Anti sigma-E protein RseA, N-terminal domain AL549_RS19225 PF03873 Anti sigma-E protein RseA, C-terminal domain AL549_RS19230 PF04542 Sigma-70 region 2 AL549_RS19230 PF08281 Sigma-70, region 4 AL549_RS19235 PF00890 FAD binding domain AL549_RS19235 PF02910 Fumarate reductase flavoprotein C-term AL549_RS19245 PF03937 Flavinator of succinate dehydrogenase AL549_RS19250 PF01571 Aminomethyltransferase folate-binding domain AL549_RS19265 PF01494 FAD binding domain AL549_RS19270 PF01494 FAD binding domain AL549_RS19275 PF03695 Uncharacterised protein family (UPF0149) AL549_RS19280 PF05164 Cell division protein ZapA AL549_RS19290 PF01812 5-formyltetrahydrofolate cyclo-ligase family AL549_RS19295 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL549_RS19300 PF01842 ACT domain AL549_RS19300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_RS19300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_RS19310 PF03466 LysR substrate binding domain AL549_RS19310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS19315 PF01810 LysE type translocator AL549_RS19320 PF05552 Conserved TM helix AL549_RS19320 PF00924 Mechanosensitive ion channel AL549_RS19325 PF01116 Fructose-bisphosphate aldolase class-II AL549_RS19330 PF00162 Phosphoglycerate kinase AL549_RS19335 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_RS19335 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL549_RS19345 PF00456 Transketolase, thiamine diphosphate binding domain AL549_RS19345 PF02779 Transketolase, pyrimidine binding domain AL549_RS19345 PF02780 Transketolase, C-terminal domain AL549_RS19350 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL549_RS19350 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL549_RS19350 PF02772 S-adenosylmethionine synthetase, central domain AL549_RS19360 PF17283 SprT-like zinc ribbon domain AL549_RS19360 PF10263 SprT-like family AL549_RS19365 PF04231 Endonuclease I AL549_RS19375 PF04452 RNA methyltransferase AL549_RS19380 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL549_RS19380 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL549_RS19385 PF02622 Uncharacterized ACR, COG1678 AL549_RS19390 PF03652 Holliday junction resolvase AL549_RS19395 PF00437 Type II/IV secretion system protein AL549_RS19400 PF00437 Type II/IV secretion system protein AL549_RS19405 PF01168 Alanine racemase, N-terminal domain AL549_RS19410 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL549_RS19410 PF03807 NADP oxidoreductase coenzyme F420-dependent AL549_RS19415 PF02325 YGGT family AL549_RS19420 PF02594 Uncharacterised ACR, YggU family COG1872 AL549_RS19430 PF01725 Ham1 family AL549_RS19435 PF04055 Radical SAM superfamily AL549_RS19435 PF06969 HemN C-terminal domain AL549_RS19445 PF04960 Glutaminase AL549_RS19450 PF02390 Putative methyltransferase AL549_RS19455 PF14815 NUDIX domain AL549_RS19455 PF00730 HhH-GPD superfamily base excision DNA repair protein AL549_RS19455 PF00633 Helix-hairpin-helix motif AL549_RS19460 PF04362 Bacterial Fe(2+) trafficking AL549_RS19465 PF01464 Transglycosylase SLT domain AL549_RS19465 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL549_RS19485 PF17200 Single Cache domain 2 AL549_RS19485 PF00672 HAMP domain AL549_RS19485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS19580 PF00072 Response regulator receiver domain AL549_RS19590 PF00356 Bacterial regulatory proteins, lacI family AL549_RS19595 PF04794 YdjC-like protein AL549_RS19600 PF11975 Family 4 glycosyl hydrolase C-terminal domain AL549_RS19600 PF02056 Family 4 glycosyl hydrolase AL549_RS19605 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AL549_RS19610 PF02378 Phosphotransferase system, EIIC AL549_RS19615 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_RS19620 PF01522 Polysaccharide deacetylase AL549_RS19635 PF03739 Lipopolysaccharide export system permease LptF/LptG AL549_RS19640 PF03739 Lipopolysaccharide export system permease LptF/LptG AL549_RS19645 PF00883 Cytosol aminopeptidase family, catalytic domain AL549_RS19645 PF02789 Cytosol aminopeptidase family, N-terminal domain AL549_RS19650 PF04364 DNA polymerase III chi subunit, HolC AL549_RS19655 PF08264 Anticodon-binding domain of tRNA AL549_RS19655 PF10458 Valyl tRNA synthetase tRNA binding arm AL549_RS19655 PF00133 tRNA synthetases class I (I, L, M and V) AL549_RS19665 PF05987 Bacterial protein of unknown function (DUF898) AL549_RS19675 PF00583 Acetyltransferase (GNAT) family AL549_RS19685 PF06877 Regulator of ribonuclease activity B AL549_RS19695 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL549_RS19695 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL549_RS19700 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL549_RS19700 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL549_RS19705 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AL549_RS19705 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AL549_RS19710 PF01042 Endoribonuclease L-PSP AL549_RS19715 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_RS19715 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_RS19720 PF00849 RNA pseudouridylate synthase AL549_RS19725 PF12137 RNA polymerase recycling family C-terminal AL549_RS19725 PF18337 RapA N-terminal Tudor like domain AL549_RS19725 PF18339 RapA N-terminal Tudor like domain 1 AL549_RS19725 PF00176 SNF2 family N-terminal domain AL549_RS19725 PF00271 Helicase conserved C-terminal domain AL549_RS19730 PF02562 PhoH-like protein AL549_RS19730 PF13638 PIN domain AL549_RS19735 PF01523 Putative modulator of DNA gyrase AL549_RS19740 PF00795 Carbon-nitrogen hydrolase AL549_RS19745 PF13116 Protein of unknown function AL549_RS19745 PF13502 AsmA-like C-terminal region AL549_RS19750 PF00575 S1 RNA binding domain AL549_RS19750 PF10150 Ribonuclease E/G family AL549_RS19755 PF02545 Maf-like protein AL549_RS19760 PF04093 rod shape-determining protein MreD AL549_RS19765 PF04085 rod shape-determining protein MreC AL549_RS19800 PF07963 Prokaryotic N-terminal methylation motif AL549_RS19805 PF07963 Prokaryotic N-terminal methylation motif AL549_RS19815 PF00482 Type II secretion system (T2SS), protein F AL549_RS19820 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AL549_RS19820 PF00437 Type II/IV secretion system protein AL549_RS19830 PF01471 Putative peptidoglycan binding domain AL549_RS19830 PF13401 AAA domain AL549_RS19835 PF03958 Bacterial type II/III secretion system short domain AL549_RS19835 PF00263 Bacterial type II and III secretion system protein AL549_RS19835 PF11741 AMIN domain AL549_RS19835 PF07660 Secretin and TonB N terminus short domain AL549_RS19855 PF00563 EAL domain AL549_RS19855 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS19855 PF17157 Gammaproteobacterial periplasmic sensor domain AL549_RS19860 PF00436 Single-strand binding protein family AL549_RS19865 PF00196 Bacterial regulatory proteins, luxR family AL549_RS19870 PF00483 Nucleotidyl transferase AL549_RS19875 PF17760 UvrA interaction domain AL549_RS19875 PF00005 ABC transporter AL549_RS19875 PF17755 UvrA DNA-binding domain AL549_RS19885 PF00266 Aminotransferase class-V AL549_RS19895 PF00696 Amino acid kinase family AL549_RS19895 PF01842 ACT domain AL549_RS19900 PF02574 Homocysteine S-methyltransferase AL549_RS19900 PF02310 B12 binding domain AL549_RS19900 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL549_RS19900 PF02607 B12 binding domain AL549_RS19900 PF00809 Pterin binding enzyme AL549_RS19905 PF00999 Sodium/hydrogen exchanger family AL549_RS19910 PF00072 Response regulator receiver domain AL549_RS19910 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS19975 PF01507 Phosphoadenosine phosphosulfate reductase family AL549_RS19980 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL549_RS19980 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL549_RS19985 PF00667 FAD binding domain AL549_RS19985 PF00258 Flavodoxin AL549_RS19985 PF00175 Oxidoreductase NAD-binding domain AL549_RS20005 PF01207 Dihydrouridine synthase (Dus) AL549_RS20010 PF01475 Ferric uptake regulator family AL549_RS20020 PF00342 Phosphoglucose isomerase AL549_RS20025 PF01894 Uncharacterised protein family UPF0047 AL549_RS20035 PF01168 Alanine racemase, N-terminal domain AL549_RS20035 PF00842 Alanine racemase, C-terminal domain AL549_RS20040 PF00772 DnaB-like helicase N terminal domain AL549_RS20040 PF03796 DnaB-like helicase C terminal domain AL549_RS20050 PF01281 Ribosomal protein L9, N-terminal domain AL549_RS20050 PF03948 Ribosomal protein L9, C-terminal domain AL549_RS20055 PF01084 Ribosomal protein S18 AL549_RS20060 PF00436 Single-strand binding protein family AL549_RS20065 PF01250 Ribosomal protein S6 AL549_RS20070 PF00834 Ribulose-phosphate 3 epimerase family AL549_RS20075 PF02086 D12 class N6 adenine-specific DNA methyltransferase AL549_RS20085 PF01761 3-dehydroquinate synthase AL549_RS20090 PF01202 Shikimate kinase AL549_RS20095 PF07660 Secretin and TonB N terminus short domain AL549_RS20095 PF11741 AMIN domain AL549_RS20095 PF03958 Bacterial type II/III secretion system short domain AL549_RS20095 PF00263 Bacterial type II and III secretion system protein AL549_RS20120 PF00912 Transglycosylase AL549_RS20120 PF00905 Penicillin binding protein transpeptidase domain AL549_RS20120 PF17092 Penicillin-binding protein OB-like domain AL549_RS20125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS20125 PF03466 LysR substrate binding domain AL549_RS20135 PF14698 Argininosuccinate lyase C-terminal AL549_RS20135 PF00206 Lyase AL549_RS20135 PF00583 Acetyltransferase (GNAT) family AL549_RS20140 PF00764 Arginosuccinate synthase AL549_RS20145 PF00696 Amino acid kinase family AL549_RS20150 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL549_RS20150 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL549_RS20155 PF01546 Peptidase family M20/M25/M40 AL549_RS20155 PF07687 Peptidase dimerisation domain AL549_RS20160 PF00311 Phosphoenolpyruvate carboxylase AL549_RS20170 PF02219 Methylenetetrahydrofolate reductase AL549_RS20175 PF03447 Homoserine dehydrogenase, NAD binding domain AL549_RS20175 PF00742 Homoserine dehydrogenase AL549_RS20175 PF00696 Amino acid kinase family AL549_RS20180 PF01053 Cys/Met metabolism PLP-dependent enzyme AL549_RS20185 PF01340 Met Apo-repressor, MetJ AL549_RS20190 PF00390 Malic enzyme, N-terminal domain AL549_RS20190 PF03949 Malic enzyme, NAD binding domain AL549_RS20195 PF01197 Ribosomal protein L31 AL549_RS20200 PF00270 DEAD/DEAH box helicase AL549_RS20200 PF00271 Helicase conserved C-terminal domain AL549_RS20200 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL549_RS20200 PF17764 3′ DNA-binding domain (3′BD) AL549_RS20200 PF18074 Primosomal protein N C-terminal domain AL549_RS20205 PF00356 Bacterial regulatory proteins, lacI family AL549_RS20215 PF00227 Proteasome subunit AL549_RS20220 PF07724 AAA domain (Cdc48 subfamily) AL549_RS20220 PF00004 ATPase family associated with various cellular activities (AAA) AL549_RS20220 PF10431 C-terminal, D2-small domain, of ClpB protein AL549_RS20225 PF01040 UbiA prenyltransferase family AL549_RS20230 PF03737 Aldolase/RraA AL549_RS20235 PF06005 Cell division protein ZapB AL549_RS20240 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AL549_RS20265 PF00121 Triosephosphate isomerase AL549_RS20270 PF16363 GDP-mannose 4,6 dehydratase AL549_RS20275 PF00210 Ferritin-like domain AL549_RS20280 PF04324 BFD-like [2Fe-2S] binding domain AL549_RS20285 PF03144 Elongation factor Tu domain 2 AL549_RS20285 PF03143 Elongation factor Tu C-terminal domain AL549_RS20285 PF00009 Elongation factor Tu GTP binding domain AL549_RS20290 PF14492 Elongation Factor G, domain II AL549_RS20290 PF03764 Elongation factor G, domain IV AL549_RS20290 PF00009 Elongation factor Tu GTP binding domain AL549_RS20290 PF03144 Elongation factor Tu domain 2 AL549_RS20290 PF00679 Elongation factor G C-terminus AL549_RS20295 PF00177 Ribosomal protein S7p/S5e AL549_RS20300 PF00164 Ribosomal protein S12/S23 AL549_RS20305 PF04077 DsrH like protein AL549_RS20310 PF02635 DsrE/DsrF-like family AL549_RS20315 PF02635 DsrE/DsrF-like family AL549_RS20320 PF13309 HTH domain AL549_RS20320 PF08348 YheO-like PAS domain AL549_RS20325 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_RS20325 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL549_RS20335 PF04102 SlyX AL549_RS20340 PF01112 Asparaginase AL549_RS20345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_RS20360 PF02525 Flavodoxin-like fold AL549_RS20365 PF12848 ABC transporter AL549_RS20365 PF00005 ABC transporter AL549_RS20375 PF00561 alpha/beta hydrolase fold AL549_RS20380 PF06794 Uncharacterised protein family (UPF0270) AL549_RS20385 PF00485 Phosphoribulokinase / Uridine kinase family AL549_RS20390 PF13545 Crp-like helix-turn-helix domain AL549_RS20390 PF00027 Cyclic nucleotide-binding domain AL549_RS20400 PF00171 Aldehyde dehydrogenase family AL549_RS20405 PF04958 Arginine N-succinyltransferase beta subunit AL549_RS20410 PF00202 Aminotransferase class-III AL549_RS20415 PF00117 Glutamine amidotransferase class-I AL549_RS20430 PF00579 tRNA synthetases class I (W and Y) AL549_RS20435 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS20440 PF00588 SpoU rRNA Methylase family AL549_RS20440 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL549_RS20445 PF17876 Cold shock domain AL549_RS20445 PF00773 RNB domain AL549_RS20445 PF08206 Ribonuclease B OB domain AL549_RS20445 PF00575 S1 RNA binding domain AL549_RS20445 PF08461 Ribonuclease R winged-helix domain AL549_RS20450 PF01979 Amidohydrolase family AL549_RS20455 PF02082 Transcriptional regulator AL549_RS20460 PF00970 Oxidoreductase FAD-binding domain AL549_RS20460 PF00042 Globin AL549_RS20460 PF00175 Oxidoreductase NAD-binding domain AL549_RS20465 PF08238 Sel1 repeat AL549_RS20470 PF00709 Adenylosuccinate synthetase AL549_RS20475 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AL549_RS20480 PF01145 SPFH domain / Band 7 family AL549_RS20485 PF12221 Bacterial membrane protein N terminal AL549_RS20485 PF01145 SPFH domain / Band 7 family AL549_RS20490 PF01926 50S ribosome-binding GTPase AL549_RS20490 PF13167 GTP-binding GTPase N-terminal AL549_RS20490 PF16360 GTP-binding GTPase Middle Region AL549_RS20495 PF17209 Hfq protein AL549_RS20505 PF01119 DNA mismatch repair protein, C-terminal domain AL549_RS20505 PF08676 MutL C terminal dimerisation domain AL549_RS20510 PF01520 N-acetylmuramoyl-L-alanine amidase AL549_RS20515 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL549_RS20520 PF08331 Domain of unknown function (DUF1730) AL549_RS20580 PF00929 Exonuclease AL549_RS20585 PF03193 RsgA GTPase AL549_RS20590 PF02666 Phosphatidylserine decarboxylase AL549_RS20595 PF00939 Sodium:sulfate symporter transmembrane region AL549_RS20605 PF01676 Metalloenzyme superfamily AL549_RS20605 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AL549_RS20615 PF00581 Rhodanese-like domain AL549_RS20620 PF02556 Preprotein translocase subunit SecB AL549_RS20625 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL549_RS20625 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL549_RS20630 PF06426 Serine acetyltransferase, N-terminal AL549_RS20630 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS20635 PF01551 Peptidase family M23 AL549_RS20645 PF00440 Bacterial regulatory proteins, tetR family AL549_RS20645 PF08360 QacR-like protein, C-terminal region AL549_RS20655 PF00152 tRNA synthetases class II (D, K and N) AL549_RS20660 PF00890 FAD binding domain AL549_RS20660 PF02910 Fumarate reductase flavoprotein C-term AL549_RS20665 PF13085 2Fe-2S iron-sulfur cluster binding domain AL549_RS20665 PF13183 4Fe-4S dicluster domain AL549_RS20670 PF02300 Fumarate reductase subunit C AL549_RS20675 PF02313 Fumarate reductase subunit D AL549_RS20685 PF01132 Elongation factor P (EF-P) OB domain AL549_RS20685 PF09285 Elongation factor P, C-terminal AL549_RS20685 PF08207 Elongation factor P (EF-P) KOW-like domain AL549_RS20690 PF04055 Radical SAM superfamily AL549_RS20695 PF02308 MgtC family AL549_RS20705 PF00118 TCP-1/cpn60 chaperonin family AL549_RS20710 PF00166 Chaperonin 10 Kd subunit AL549_RS20715 PF01554 MatE AL549_RS20720 PF00365 Phosphofructokinase AL549_RS20725 PF01545 Cation efflux family AL549_RS20725 PF16916 Dimerisation domain of Zinc Transporter AL549_RS20730 PF07813 LTXXQ motif family protein AL549_RS20735 PF00486 Transcriptional regulatory protein, C terminal AL549_RS20735 PF00072 Response regulator receiver domain AL549_RS20740 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS20740 PF16527 Two-component sensor protein CpxA, periplasmic domain AL549_RS20740 PF00672 HAMP domain AL549_RS20740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS20745 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL549_RS20745 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL549_RS20750 PF00588 SpoU rRNA Methylase family AL549_RS20755 PF04186 FxsA cytoplasmic membrane protein AL549_RS20760 PF00206 Lyase AL549_RS20760 PF10415 Fumarase C C-terminus AL549_RS20765 PF03605 Anaerobic c4-dicarboxylate membrane transporter AL549_RS20770 PF02683 Cytochrome C biogenesis protein transmembrane region AL549_RS20770 PF11412 Disulphide bond corrector protein DsbC AL549_RS20780 PF01914 MarC family integral membrane protein AL549_RS20790 PF00474 Sodium:solute symporter family AL549_RS20810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS20810 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS20810 PF01627 Hpt domain AL549_RS20810 PF00072 Response regulator receiver domain AL549_RS20810 PF00672 HAMP domain AL549_RS20815 PF12832 MFS_1 like family AL549_RS20830 PF13193 AMP-binding enzyme C-terminal domain AL549_RS20830 PF16177 Acetyl-coenzyme A synthetase N-terminus AL549_RS20830 PF00501 AMP-binding enzyme AL549_RS20835 PF01220 Dehydroquinase class II AL549_RS20840 PF00364 Biotin-requiring enzyme AL549_RS20845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL549_RS20845 PF02785 Biotin carboxylase C-terminal domain AL549_RS20845 PF00289 Biotin carboxylase, N-terminal domain AL549_RS20855 PF01207 Dihydrouridine synthase (Dus) AL549_RS20860 PF02954 Bacterial regulatory protein, Fis family AL549_RS20865 PF00672 HAMP domain AL549_RS20865 PF17200 Single Cache domain 2 AL549_RS20865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS20870 PF13411 MerR HTH family regulatory protein AL549_RS20880 PF02142 MGS-like domain AL549_RS20880 PF01808 AICARFT/IMPCHase bienzyme AL549_RS20885 PF02844 Phosphoribosylglycinamide synthetase, N domain AL549_RS20885 PF02843 Phosphoribosylglycinamide synthetase, C domain AL549_RS20885 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL549_RS20895 PF00216 Bacterial DNA-binding protein AL549_RS20900 PF01595 Cyclin M transmembrane N-terminal domain AL549_RS20900 PF00571 CBS domain AL549_RS20905 PF04222 Protein of unknown function (DUF416) AL549_RS20910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL549_RS20910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL549_RS20915 PF03167 Uracil DNA glycosylase superfamily AL549_RS20920 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL549_RS20935 PF00293 NUDIX domain AL549_RS20935 PF09297 NADH pyrophosphatase zinc ribbon domain AL549_RS20940 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AL549_RS20945 PF00623 RNA polymerase Rpb1, domain 2 AL549_RS20945 PF05000 RNA polymerase Rpb1, domain 4 AL549_RS20945 PF04983 RNA polymerase Rpb1, domain 3 AL549_RS20945 PF04998 RNA polymerase Rpb1, domain 5 AL549_RS20945 PF04997 RNA polymerase Rpb1, domain 1 AL549_RS20950 PF04565 RNA polymerase Rpb2, domain 3 AL549_RS20950 PF04560 RNA polymerase Rpb2, domain 7 AL549_RS20950 PF00562 RNA polymerase Rpb2, domain 6 AL549_RS20950 PF04563 RNA polymerase beta subunit AL549_RS20950 PF04561 RNA polymerase Rpb2, domain 2 AL549_RS20950 PF10385 RNA polymerase beta subunit external 1 domain AL549_RS20955 PF16320 Ribosomal protein L7/L12 dimerisation domain AL549_RS20955 PF00542 Ribosomal protein L7/L12 C-terminal domain AL549_RS20960 PF00466 Ribosomal protein L10 AL549_RS20965 PF00687 Ribosomal protein L1p/L10e family AL549_RS20970 PF03946 Ribosomal protein L11, N-terminal domain AL549_RS20970 PF00298 Ribosomal protein L11, RNA binding domain AL549_RS20975 PF02357 Transcription termination factor nusG AL549_RS20975 PF00467 KOW motif AL549_RS20980 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL549_RS20985 PF00009 Elongation factor Tu GTP binding domain AL549_RS20985 PF03144 Elongation factor Tu domain 2 AL549_RS20985 PF03143 Elongation factor Tu C-terminal domain AL549_RS21010 PF00485 Phosphoribulokinase / Uridine kinase family AL549_RS21015 PF03099 Biotin/lipoate A/B protein ligase family AL549_RS21015 PF02237 Biotin protein ligase C terminal domain AL549_RS21015 PF08279 HTH domain AL549_RS21020 PF01565 FAD binding domain AL549_RS21020 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL549_RS21030 PF13091 PLD-like domain AL549_RS21095 PF01177 Asp/Glu/Hydantoin racemase AL549_RS21105 PF00593 TonB dependent receptor AL549_RS21105 PF07715 TonB-dependent Receptor Plug Domain AL549_RS21110 PF05958 tRNA (Uracil-5-)-methyltransferase AL549_RS21120 PF00440 Bacterial regulatory proteins, tetR family AL549_RS21125 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS21125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL549_RS21135 PF01726 LexA DNA binding domain AL549_RS21135 PF00717 Peptidase S24-like AL549_RS21145 PF01553 Acyltransferase AL549_RS21155 PF01040 UbiA prenyltransferase family AL549_RS21160 PF04345 Chorismate lyase AL549_RS21165 PF03748 Flagellar basal body-associated protein FliL AL549_RS21170 PF01694 Rhomboid family AL549_RS21170 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AL549_RS21175 PF00581 Rhodanese-like domain AL549_RS21180 PF00140 Sigma-70 factor, region 1.2 AL549_RS21180 PF04545 Sigma-70, region 4 AL549_RS21180 PF04542 Sigma-70 region 2 AL549_RS21185 PF18075 FtsX extracellular domain AL549_RS21190 PF00005 ABC transporter AL549_RS21195 PF02881 SRP54-type protein, helical bundle domain AL549_RS21195 PF00448 SRP54-type protein, GTPase domain AL549_RS21210 PF01914 MarC family integral membrane protein AL549_RS21255 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL549_RS21255 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_RS21260 PF01022 Bacterial regulatory protein, arsR family AL549_RS21265 PF08668 HDOD domain AL549_RS21265 PF00563 EAL domain AL549_RS21270 PF01810 LysE type translocator AL549_RS21275 PF12146 Serine aminopeptidase, S33 AL549_RS21295 PF03942 DTW domain AL549_RS21300 PF08495 FIST N domain AL549_RS21300 PF00563 EAL domain AL549_RS21300 PF10442 FIST C domain AL549_RS21300 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS21305 PF13419 Haloacid dehalogenase-like hydrolase AL549_RS21310 PF00589 Phage integrase family AL549_RS21310 PF02899 Phage integrase, N-terminal SAM-like domain AL549_RS21320 PF01678 Diaminopimelate epimerase AL549_RS21325 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL549_RS21325 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL549_RS21335 PF01491 Frataxin-like domain AL549_RS21340 PF12633 Adenylate cyclase NT domain AL549_RS21340 PF01295 Adenylate cyclase, class-I AL549_RS21345 PF03900 Porphobilinogen deaminase, C-terminal domain AL549_RS21345 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL549_RS21350 PF02602 Uroporphyrinogen-III synthase HemD AL549_RS21355 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AL549_RS21370 PF10625 Universal stress protein B (UspB) AL549_RS21375 PF00210 Ferritin-like domain AL549_RS21380 PF00582 Universal stress protein family AL549_RS21385 PF00892 EamA-like transporter family AL549_RS21395 PF04445 Putative SAM-dependent methyltransferase AL549_RS21400 PF08448 PAS fold AL549_RS21400 PF00563 EAL domain AL549_RS21400 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS21405 PF01037 Lrp/AsnC ligand binding domain AL549_RS21410 PF01432 Peptidase family M3 AL549_RS21415 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL549_RS21420 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL549_RS21420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL549_RS21440 PF01081 KDPG and KHG aldolase AL549_RS21445 PF02447 GntP family permease AL549_RS21450 PF01202 Shikimate kinase AL549_RS21455 PF00920 Dehydratase family AL549_RS21460 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AL549_RS21460 PF00356 Bacterial regulatory proteins, lacI family AL549_RS21465 PF00072 Response regulator receiver domain AL549_RS21475 PF00069 Protein kinase domain AL549_RS21475 PF03793 PASTA domain AL549_RS21510 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_RS21510 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS21515 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS21520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_RS21525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS21525 PF00005 ABC transporter AL549_RS21555 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL549_RS21560 PF13361 UvrD-like helicase C-terminal domain AL549_RS21560 PF00580 UvrD/REP helicase N-terminal domain AL549_RS21565 PF00440 Bacterial regulatory proteins, tetR family AL549_RS21570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL549_RS21575 PF00873 AcrB/AcrD/AcrF family AL549_RS21580 PF04380 Membrane fusogenic activity AL549_RS21585 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL549_RS21585 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL549_RS21590 PF03466 LysR substrate binding domain AL549_RS21590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS21630 PF12724 Flavodoxin domain AL549_RS21635 PF02386 Cation transport protein AL549_RS21640 PF09186 Domain of unknown function (DUF1949) AL549_RS21640 PF01205 Uncharacterized protein family UPF0029 AL549_RS21645 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL549_RS21645 PF00378 Enoyl-CoA hydratase/isomerase AL549_RS21645 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL549_RS21650 PF00108 Thiolase, N-terminal domain AL549_RS21650 PF02803 Thiolase, C-terminal domain AL549_RS21655 PF00107 Zinc-binding dehydrogenase AL549_RS21655 PF08240 Alcohol dehydrogenase GroES-like domain AL549_RS21660 PF03466 LysR substrate binding domain AL549_RS21660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS21670 PF01206 Sulfurtransferase TusA AL549_RS21680 PF01169 Uncharacterized protein family UPF0016 AL549_RS21685 PF02091 Glycyl-tRNA synthetase alpha subunit AL549_RS21690 PF02092 Glycyl-tRNA synthetase beta subunit AL549_RS21690 PF05746 DALR anticodon binding domain AL549_RS21700 PF00155 Aminotransferase class I and II AL549_RS21705 PF03707 Bacterial signalling protein N terminal repeat AL549_RS21705 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS21705 PF00563 EAL domain AL549_RS21710 PF00011 Hsp20/alpha crystallin family AL549_RS21715 PF00204 DNA gyrase B AL549_RS21715 PF00986 DNA gyrase B subunit, carboxyl terminus AL549_RS21715 PF18053 DNA gyrase B subunit insert domain AL549_RS21715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS21715 PF01751 Toprim domain AL549_RS21720 PF02463 RecF/RecN/SMC N terminal domain AL549_RS21725 PF02767 DNA polymerase III beta subunit, central domain AL549_RS21725 PF00712 DNA polymerase III beta subunit, N-terminal domain AL549_RS21725 PF02768 DNA polymerase III beta subunit, C-terminal domain AL549_RS21730 PF00308 Bacterial dnaA protein AL549_RS21730 PF11638 DnaA N-terminal domain AL549_RS21730 PF08299 Bacterial dnaA protein helix-turn-helix AL549_RS21735 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_RS21740 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS21745 PF00005 ABC transporter AL549_RS21750 PF00468 Ribosomal protein L34 AL549_RS21755 PF00825 Ribonuclease P AL549_RS21760 PF01809 Putative membrane protein insertion efficiency factor AL549_RS21765 PF14849 YidC periplasmic domain AL549_RS21765 PF02096 60Kd inner membrane protein AL549_RS21770 PF01926 50S ribosome-binding GTPase AL549_RS21770 PF12631 MnmE helical domain AL549_RS21770 PF10396 GTP-binding protein TrmE N-terminus AL549_RS21775 PF00258 Flavodoxin AL549_RS21785 PF01134 Glucose inhibited division protein A AL549_RS21785 PF13932 GidA associated domain AL549_RS21790 PF02527 rRNA small subunit methyltransferase G AL549_RS21795 PF13614 AAA domain AL549_RS21800 PF17762 HTH domain found in ParB protein AL549_RS21800 PF02195 ParB-like nuclease domain AL549_RS21805 PF03899 ATP synthase I chain AL549_RS21810 PF00119 ATP synthase A chain AL549_RS21815 PF00137 ATP synthase subunit C AL549_RS21820 PF00430 ATP synthase B/B' CF(0) AL549_RS21825 PF00213 ATP synthase delta (OSCP) subunit AL549_RS21830 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL549_RS21830 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL549_RS21830 PF00306 ATP synthase alpha/beta chain, C terminal domain AL549_RS21835 PF00231 ATP synthase AL549_RS21840 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL549_RS21840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL549_RS21845 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL549_RS21845 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AL549_RS21850 PF12804 MobA-like NTP transferase domain AL549_RS21850 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS21850 PF14602 Hexapeptide repeat of succinyl-transferase AL549_RS21855 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS21860 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL549_RS21865 PF07690 Major Facilitator Superfamily AL549_RS21870 PF03466 LysR substrate binding domain AL549_RS21870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS21875 PF00585 C-terminal regulatory domain of Threonine dehydratase AL549_RS21875 PF00291 Pyridoxal-phosphate dependent enzyme AL549_RS21880 PF00920 Dehydratase family AL549_RS21885 PF01063 Amino-transferase class IV AL549_RS21895 PF00205 Thiamine pyrophosphate enzyme, central domain AL549_RS21895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL549_RS21895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL549_RS21900 PF01078 Magnesium chelatase, subunit ChlI AL549_RS21900 PF13335 Magnesium chelatase, subunit ChlI C-terminal AL549_RS21910 PF01553 Acyltransferase AL549_RS21915 PF01323 DSBA-like thioredoxin domain AL549_RS21920 PF01636 Phosphotransferase enzyme family AL549_RS21925 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL549_RS21925 PF12801 4Fe-4S binding domain AL549_RS21925 PF13746 4Fe-4S dicluster domain AL549_RS21930 PF06288 Protein of unknown function (DUF1040) AL549_RS21935 PF07070 SpoOM protein AL549_RS21940 PF03006 Haemolysin-III related AL549_RS21945 PF02386 Cation transport protein AL549_RS21950 PF02080 TrkA-C domain AL549_RS21950 PF02254 TrkA-N domain AL549_RS21955 PF01029 NusB family AL549_RS21955 PF01189 16S rRNA methyltransferase RsmB/F AL549_RS21960 PF00551 Formyl transferase AL549_RS21960 PF02911 Formyl transferase, C-terminal domain AL549_RS21965 PF01327 Polypeptide deformylase AL549_RS21975 PF17782 DprA winged helix domain AL549_RS21975 PF02481 DNA recombination-mediator protein A AL549_RS21980 PF04361 Protein of unknown function (DUF494) AL549_RS21985 PF01396 Topoisomerase DNA binding C4 zinc finger AL549_RS21990 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL549_RS21990 PF02222 ATP-grasp domain AL549_RS21995 PF00731 AIR carboxylase AL549_RS22000 PF01300 Telomere recombination AL549_RS22005 PF01218 Coproporphyrinogen III oxidase AL549_RS22010 PF08501 Shikimate dehydrogenase substrate binding domain AL549_RS22010 PF01488 Shikimate / quinate 5-dehydrogenase AL549_RS22010 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL549_RS22015 PF07369 Protein of unknown function (DUF1488) AL549_RS22020 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS22065 PF07732 Multicopper oxidase AL549_RS22065 PF00394 Multicopper oxidase AL549_RS22065 PF07731 Multicopper oxidase AL549_RS22070 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL549_RS22075 PF01964 Radical SAM ThiC family AL549_RS22075 PF13667 ThiC-associated domain AL549_RS22080 PF02581 Thiamine monophosphate synthase AL549_RS22085 PF00899 ThiF family AL549_RS22095 PF05690 Thiazole biosynthesis protein ThiG AL549_RS22100 PF06968 Biotin and Thiamin Synthesis associated domain AL549_RS22100 PF04055 Radical SAM superfamily AL549_RS22105 PF01321 Creatinase/Prolidase N-terminal domain AL549_RS22105 PF00557 Metallopeptidase family M24 AL549_RS22105 PF01321 Creatinase/Prolidase N-terminal domain AL549_RS22105 PF00557 Metallopeptidase family M24 AL549_RS22110 PF03466 LysR substrate binding domain AL549_RS22110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS22115 PF07690 Major Facilitator Superfamily AL549_RS22135 PF05114 Protein of unknown function (DUF692) AL549_RS22145 PF13361 UvrD-like helicase C-terminal domain AL549_RS22145 PF00580 UvrD/REP helicase N-terminal domain AL549_RS22155 PF01810 LysE type translocator AL549_RS22165 PF00892 EamA-like transporter family AL549_RS22170 PF16124 RecQ zinc-binding AL549_RS22170 PF00270 DEAD/DEAH box helicase AL549_RS22170 PF00570 HRDC domain AL549_RS22170 PF09382 RQC domain AL549_RS22170 PF00271 Helicase conserved C-terminal domain AL549_RS22185 PF02592 Putative vitamin uptake transporter AL549_RS22190 PF02541 Ppx/GppA phosphatase family AL549_RS22195 PF00270 DEAD/DEAH box helicase AL549_RS22195 PF00271 Helicase conserved C-terminal domain AL549_RS22200 PF00085 Thioredoxin AL549_RS22205 PF07497 Rho termination factor, RNA-binding domain AL549_RS22205 PF07498 Rho termination factor, N-terminal domain AL549_RS22205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL549_RS22215 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL549_RS22220 PF00970 Oxidoreductase FAD-binding domain AL549_RS22220 PF00111 2Fe-2S iron-sulfur cluster binding domain AL549_RS22220 PF00175 Oxidoreductase NAD-binding domain AL549_RS22225 PF00175 Oxidoreductase NAD-binding domain AL549_RS22315 PF02646 RmuC family AL549_RS22320 PF01209 ubiE/COQ5 methyltransferase family AL549_RS22325 PF02036 SCP-2 sterol transfer family AL549_RS22330 PF03109 ABC1 family AL549_RS22335 PF02416 mttA/Hcf106 family AL549_RS22340 PF02416 mttA/Hcf106 family AL549_RS22345 PF00902 Sec-independent protein translocase protein (TatC) AL549_RS22350 PF01026 TatD related DNase AL549_RS22355 PF00490 Delta-aminolevulinic acid dehydratase AL549_RS22360 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL549_RS22360 PF00476 DNA polymerase family A AL549_RS22360 PF01612 3'-5' exonuclease AL549_RS22360 PF01367 5'-3' exonuclease, C-terminal SAM fold AL549_RS22365 PF01926 50S ribosome-binding GTPase AL549_RS22370 PF00034 Cytochrome c AL549_RS22380 PF04220 Der GTPase activator (YihI) AL549_RS22385 PF10675 Protein of unknown function (DUF2489) AL549_RS22390 PF06969 HemN C-terminal domain AL549_RS22390 PF04055 Radical SAM superfamily AL549_RS22395 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS22395 PF00563 EAL domain AL549_RS22395 PF13188 PAS domain AL549_RS22395 PF03707 Bacterial signalling protein N terminal repeat AL549_RS22400 PF00072 Response regulator receiver domain AL549_RS22400 PF00158 Sigma-54 interaction domain AL549_RS22400 PF02954 Bacterial regulatory protein, Fis family AL549_RS22405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS22405 PF00989 PAS fold AL549_RS22405 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS22415 PF00120 Glutamine synthetase, catalytic domain AL549_RS22415 PF03951 Glutamine synthetase, beta-Grasp domain AL549_RS22425 PF00009 Elongation factor Tu GTP binding domain AL549_RS22425 PF00679 Elongation factor G C-terminus AL549_RS22425 PF03144 Elongation factor Tu domain 2 AL549_RS22440 PF03631 Virulence factor BrkB AL549_RS22445 PF02580 D-Tyr-tRNA(Tyr) deacylase AL549_RS22450 PF00583 Acetyltransferase (GNAT) family AL549_RS22450 PF09500 Putative thioesterase (yiiD_Cterm) AL549_RS22460 PF01293 Phosphoenolpyruvate carboxykinase AL549_RS22465 PF01430 Hsp33 protein AL549_RS22470 PF01479 S4 domain AL549_RS22475 PF11356 Type II secretion system protein C AL549_RS22480 PF00263 Bacterial type II and III secretion system protein AL549_RS22480 PF03958 Bacterial type II/III secretion system short domain AL549_RS22485 PF00437 Type II/IV secretion system protein AL549_RS22490 PF00482 Type II secretion system (T2SS), protein F AL549_RS22495 PF08334 Type II secretion system (T2SS), protein G AL549_RS22495 PF07963 Prokaryotic N-terminal methylation motif AL549_RS22500 PF12019 Type II transport protein GspH AL549_RS22505 PF02501 Type II secretion system (T2SS), protein I AL549_RS22505 PF07963 Prokaryotic N-terminal methylation motif AL549_RS22510 PF07963 Prokaryotic N-terminal methylation motif AL549_RS22510 PF11612 Type II secretion system (T2SS), protein J AL549_RS22515 PF03934 Type II secretion system (T2SS), protein K AL549_RS22520 PF05134 Type II secretion system (T2SS), protein L AL549_RS22520 PF12693 GspL periplasmic domain AL549_RS22525 PF04612 Type II secretion system (T2SS), protein M AL549_RS22530 PF01203 Type II secretion system (T2SS), protein N AL549_RS22535 PF00459 Inositol monophosphatase family AL549_RS22540 PF00293 NUDIX domain AL549_RS22545 PF01106 NifU-like domain AL549_RS22545 PF01521 Iron-sulphur cluster biosynthesis AL549_RS22550 PF00156 Phosphoribosyl transferase domain AL549_RS22555 PF00561 alpha/beta hydrolase fold AL549_RS22565 PF00575 S1 RNA binding domain AL549_RS22565 PF09371 Tex-like protein N-terminal domain AL549_RS22565 PF16921 Tex protein YqgF-like domain AL549_RS22565 PF17674 HHH domain AL549_RS22570 PF01272 Transcription elongation factor, GreA/GreB, C-term AL549_RS22570 PF03449 Transcription elongation factor, N-terminal AL549_RS22575 PF00486 Transcriptional regulatory protein, C terminal AL549_RS22575 PF00072 Response regulator receiver domain AL549_RS22580 PF00512 His Kinase A (phospho-acceptor) domain AL549_RS22580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL549_RS22580 PF00672 HAMP domain AL549_RS22585 PF00860 Permease family AL549_RS22590 PF00271 Helicase conserved C-terminal domain AL549_RS22590 PF00270 DEAD/DEAH box helicase AL549_RS22590 PF17191 RecG wedge domain AL549_RS22595 PF12105 SpoU, rRNA methylase, C-terminal AL549_RS22595 PF00588 SpoU rRNA Methylase family AL549_RS22600 PF04607 Region found in RelA / SpoT proteins AL549_RS22600 PF02824 TGS domain AL549_RS22600 PF13291 ACT domain AL549_RS22605 PF01192 RNA polymerase Rpb6 AL549_RS22610 PF00625 Guanylate kinase AL549_RS22625 PF02472 Biopolymer transport protein ExbD/TolR AL549_RS22630 PF01618 MotA/TolQ/ExbB proton channel family AL549_RS22635 PF01618 MotA/TolQ/ExbB proton channel family AL549_RS22645 PF00593 TonB dependent receptor AL549_RS22645 PF07715 TonB-dependent Receptor Plug Domain AL549_RS22650 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS22655 PF12911 N-terminal TM domain of oligopeptide transport permease C AL549_RS22655 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS22660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL549_RS22665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS22665 PF00005 ABC transporter AL549_RS22670 PF00005 ABC transporter AL549_RS22670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL549_RS22695 PF00892 EamA-like transporter family AL549_RS22700 PF03755 YicC-like family, N-terminal region AL549_RS22700 PF08340 Domain of unknown function (DUF1732) AL549_RS22705 PF01138 3' exoribonuclease family, domain 1 AL549_RS22705 PF03725 3' exoribonuclease family, domain 2 AL549_RS22710 PF00156 Phosphoribosyl transferase domain AL549_RS22715 PF03279 Bacterial lipid A biosynthesis acyltransferase AL549_RS22720 PF00440 Bacterial regulatory proteins, tetR family AL549_RS22725 PF04127 DNA / pantothenate metabolism flavoprotein AL549_RS22725 PF02441 Flavoprotein AL549_RS22730 PF02743 Cache domain AL549_RS22730 PF00672 HAMP domain AL549_RS22730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL549_RS22735 PF04002 RadC-like JAB domain AL549_RS22740 PF00830 Ribosomal L28 family AL549_RS22745 PF00471 Ribosomal protein L33 AL549_RS22755 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL549_RS22755 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL549_RS22755 PF06827 Zinc finger found in FPG and IleRS AL549_RS22765 PF01467 Cytidylyltransferase-like AL549_RS22770 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL549_RS22775 PF00535 Glycosyl transferase family 2 AL549_RS22780 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL549_RS22785 PF01219 Prokaryotic diacylglycerol kinase AL549_RS22795 PF11893 Domain of unknown function (DUF3413) AL549_RS22795 PF00884 Sulfatase AL549_RS22805 PF02719 Polysaccharide biosynthesis protein AL549_RS22810 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL549_RS22815 PF02350 UDP-N-acetylglucosamine 2-epimerase AL549_RS22820 PF03102 NeuB family AL549_RS22820 PF08666 SAF domain AL549_RS22830 PF00483 Nucleotidyl transferase AL549_RS22835 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL549_RS22835 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL549_RS22840 PF00132 Bacterial transferase hexapeptide (six repeats) AL549_RS22845 PF02348 Cytidylyltransferase AL549_RS22855 PF13439 Glycosyltransferase Family 4 AL549_RS22855 PF00534 Glycosyl transferases group 1 AL549_RS22865 PF00501 AMP-binding enzyme AL549_RS22865 PF13193 AMP-binding enzyme C-terminal domain AL549_RS22870 PF00465 Iron-containing alcohol dehydrogenase AL549_RS22895 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL549_RS22900 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL549_RS22905 PF03279 Bacterial lipid A biosynthesis acyltransferase AL549_RS22910 PF01370 NAD dependent epimerase/dehydratase family AL549_RS22915 PF06082 Exopolysaccharide biosynthesis protein YbjH AL549_RS22925 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF AL549_RS22960 PF02563 Polysaccharide biosynthesis/export protein AL549_RS22960 PF18412 Outer-membrane lipoprotein Wza C-terminal domain AL549_RS22960 PF10531 SLBB domain AL549_RS22970 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL549_RS22975 PF13614 AAA domain AL549_RS22975 PF13807 G-rich domain on putative tyrosine kinase AL549_RS22975 PF02706 Chain length determinant protein AL549_RS22990 PF04991 LicD family AL549_RS22995 PF04991 LicD family AL549_RS23010 PF01797 Transposase IS200 like AL549_RS23020 PF02719 Polysaccharide biosynthesis protein AL549_RS23020 PF08485 Polysaccharide biosynthesis protein C-terminal AL549_RS23025 PF01370 NAD dependent epimerase/dehydratase family AL549_RS23030 PF02350 UDP-N-acetylglucosamine 2-epimerase AL549_RS23050 PF00953 Glycosyl transferase family 4 AL549_RS23055 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL549_RS23055 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL549_RS23075 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AL549_RS23075 PF00753 Metallo-beta-lactamase superfamily AL549_RS23075 PF10996 Beta-Casp domain AL549_RS23105 PF00338 Ribosomal protein S10p/S20e AL549_RS23110 PF00297 Ribosomal protein L3 AL549_RS23115 PF00573 Ribosomal protein L4/L1 family AL549_RS23120 PF00276 Ribosomal protein L23 AL549_RS23125 PF03947 Ribosomal Proteins L2, C-terminal domain AL549_RS23125 PF00181 Ribosomal Proteins L2, RNA binding domain AL549_RS23130 PF00203 Ribosomal protein S19 AL549_RS23135 PF00237 Ribosomal protein L22p/L17e AL549_RS23140 PF00189 Ribosomal protein S3, C-terminal domain AL549_RS23140 PF07650 KH domain AL549_RS23145 PF00252 Ribosomal protein L16p/L10e AL549_RS23150 PF00831 Ribosomal L29 protein AL549_RS23155 PF00366 Ribosomal protein S17 AL549_RS23160 PF00238 Ribosomal protein L14p/L23e AL549_RS23165 PF00467 KOW motif AL549_RS23165 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL549_RS23170 PF00281 Ribosomal protein L5 AL549_RS23170 PF00673 ribosomal L5P family C-terminus AL549_RS23175 PF00253 Ribosomal protein S14p/S29e AL549_RS23180 PF00410 Ribosomal protein S8 AL549_RS23185 PF00347 Ribosomal protein L6 AL549_RS23190 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL549_RS23195 PF03719 Ribosomal protein S5, C-terminal domain AL549_RS23195 PF00333 Ribosomal protein S5, N-terminal domain AL549_RS23200 PF00327 Ribosomal protein L30p/L7e AL549_RS23205 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AL549_RS23210 PF00344 SecY translocase AL549_RS23215 PF00444 Ribosomal protein L36 AL549_RS23220 PF00416 Ribosomal protein S13/S18 AL549_RS23225 PF00411 Ribosomal protein S11 AL549_RS23230 PF01479 S4 domain AL549_RS23230 PF00163 Ribosomal protein S4/S9 N-terminal domain AL549_RS23235 PF01000 RNA polymerase Rpb3/RpoA insert domain AL549_RS23235 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL549_RS23235 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL549_RS23240 PF01196 Ribosomal protein L17 AL549_RS23250 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AL549_RS23250 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL549_RS23255 PF04225 Opacity-associated protein A LysM-like domain AL549_RS23255 PF08525 Opacity-associated protein A N-terminal motif AL549_RS23265 PF13673 Acetyltransferase (GNAT) domain AL549_RS23275 PF02872 5'-nucleotidase, C-terminal domain AL549_RS23275 PF00149 Calcineurin-like phosphoesterase AL549_RS23280 PF14824 Sirohaem biosynthesis protein central AL549_RS23280 PF10414 Sirohaem synthase dimerisation region AL549_RS23280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL549_RS23285 PF01507 Phosphoadenosine phosphosulfate reductase family AL549_RS23290 PF00009 Elongation factor Tu GTP binding domain AL549_RS23295 PF02080 TrkA-C domain AL549_RS23295 PF03600 Citrate transporter AL549_RS23320 PF12704 MacB-like periplasmic core domain AL549_RS23320 PF02687 FtsX-like permease family AL549_RS23320 PF00005 ABC transporter AL549_RS23335 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AL549_RS23345 PF01625 Peptide methionine sulfoxide reductase AL549_RS23350 PF01103 Surface antigen AL549_RS23350 PF07244 Surface antigen variable number repeat AL549_RS23350 PF17243 POTRA domain TamA domain 1 AL549_RS23355 PF04357 TamB, inner membrane protein subunit of TAM complex AL549_RS23360 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AL549_RS23370 PF00719 Inorganic pyrophosphatase AL549_RS23375 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL549_RS23380 PF02875 Mur ligase family, glutamate ligase domain AL549_RS23380 PF01225 Mur ligase family, catalytic domain AL549_RS23380 PF08245 Mur ligase middle domain AL549_RS23385 PF02441 Flavoprotein AL549_RS23395 PF00528 Binding-protein-dependent transport system inner membrane component AL549_RS23400 PF00005 ABC transporter AL549_RS23405 PF04751 Protein of unknown function (DUF615) AL549_RS23410 PF01523 Putative modulator of DNA gyrase AL549_RS23415 PF03448 MgtE intracellular N domain AL549_RS23415 PF01769 Divalent cation transporter AL549_RS23415 PF00571 CBS domain AL549_RS23420 PF00381 PTS HPr component phosphorylation site AL549_RS23425 PF03668 P-loop ATPase protein family AL549_RS23430 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_RS23435 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AL549_RS23440 PF04963 Sigma-54 factor, core binding domain AL549_RS23440 PF04552 Sigma-54, DNA binding domain AL549_RS23440 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL549_RS23445 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL549_RS23445 PF00005 ABC transporter AL549_RS23450 PF03968 OstA-like protein AL549_RS23465 PF00571 CBS domain AL549_RS23465 PF01380 SIS domain AL549_RS23470 PF01699 Sodium/calcium exchanger protein AL549_RS23475 PF00005 ABC transporter AL549_RS23480 PF02405 Permease MlaE AL549_RS23485 PF02470 MlaD protein AL549_RS23490 PF05494 MlaC protein AL549_RS23500 PF01722 BolA-like protein AL549_RS23505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL549_RS23510 PF01553 Acyltransferase AL549_RS23515 PF00582 Universal stress protein family AL549_RS23525 PF16868 NMT1-like family AL549_RS23530 PF02863 Arginine repressor, C-terminal domain AL549_RS23530 PF01316 Arginine repressor, DNA binding domain AL549_RS23535 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL549_RS23535 PF00056 lactate/malate dehydrogenase, NAD binding domain AL549_RS23540 PF00348 Polyprenyl synthetase AL549_RS23545 PF00829 Ribosomal prokaryotic L21 protein AL549_RS23550 PF01016 Ribosomal L27 protein AL549_RS23555 PF01018 GTP1/OBG AL549_RS23555 PF01926 50S ribosome-binding GTPase AL549_RS23560 PF06738 Putative threonine/serine exporter AL549_RS23565 PF12821 Threonine/Serine exporter, ThrE AL549_RS23570 PF00186 Dihydrofolate reductase AL549_RS23575 PF00149 Calcineurin-like phosphoesterase AL549_RS23580 PF04379 ApaG domain AL549_RS23585 PF00398 Ribosomal RNA adenine dimethylase AL549_RS23590 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL549_RS23595 PF09312 SurA N-terminal domain AL549_RS23595 PF00639 PPIC-type PPIASE domain AL549_RS23600 PF03968 OstA-like protein AL549_RS23600 PF04453 LPS transport system D AL549_RS23605 PF05099 Tellurite resistance protein TerB AL549_RS23605 PF00226 DnaJ domain AL549_RS23615 PF00694 Aconitase C-terminal domain AL549_RS23620 PF00330 Aconitase family (aconitate hydratase) AL549_RS23625 PF00180 Isocitrate/isopropylmalate dehydrogenase AL549_RS23630 PF08502 LeuA allosteric (dimerisation) domain AL549_RS23630 PF00682 HMGL-like AL549_RS23640 PF01569 PAP2 superfamily AL549_RS23650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL549_RS23650 PF03466 LysR substrate binding domain AL549_RS23655 PF00501 AMP-binding enzyme AL549_RS23660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL549_RS23660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL549_RS23660 PF00205 Thiamine pyrophosphate enzyme, central domain AL549_RS23665 PF10369 Small subunit of acetolactate synthase AL549_RS23670 PF07694 5TMR of 5TMR-LYT AL549_RS23670 PF00990 Diguanylate cyclase, GGDEF domain AL549_RS23680 PF02887 Pyruvate kinase, alpha/beta domain AL549_RS23680 PF00224 Pyruvate kinase, barrel domain AL549_RS23685 PF00455 DeoR C terminal sensor domain AL549_RS23685 PF08220 DeoR-like helix-turn-helix domain AL549_RS23690 PF01380 SIS domain AL549_RS23695 PF05068 Mannitol repressor AL549_RS23700 PF01232 Mannitol dehydrogenase Rossmann domain AL549_RS23700 PF08125 Mannitol dehydrogenase C-terminal domain AL549_RS23705 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AL549_RS23705 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL549_RS23705 PF02378 Phosphotransferase system, EIIC AL549_RS23710 PF03480 Bacterial extracellular solute-binding protein, family 7 AL549_RS23730 PF04539 Sigma-70 region 3 AL549_RS23730 PF04546 Sigma-70, non-essential region AL549_RS23730 PF03979 Sigma-70 factor, region 1.1 AL549_RS23730 PF00140 Sigma-70 factor, region 1.2 AL549_RS23730 PF04542 Sigma-70 region 2 AL549_RS23730 PF04545 Sigma-70, region 4 AL549_RS23735 PF08275 DNA primase catalytic core, N-terminal domain AL549_RS23735 PF01807 CHC2 zinc finger AL549_RS23735 PF08278 DNA primase DnaG DnaB-binding AL549_RS23735 PF10410 DnaB-helicase binding domain of primase AL549_RS23740 PF09424 Yqey-like protein AL549_RS23745 PF01165 Ribosomal protein S21 AL549_RS23750 PF00814 Glycoprotease family AL549_RS23755 PF00561 alpha/beta hydrolase fold AL549_RS23760 PF02660 Glycerol-3-phosphate acyltransferase AL549_RS23765 PF02152 Dihydroneopterin aldolase AL549_RS23770 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL549_RS23775 PF02673 Bacitracin resistance protein BacA AL549_RS23780 PF01743 Poly A polymerase head domain AL549_RS23780 PF01966 HD domain AL549_RS23780 PF12627 Probable RNA and SrmB- binding site of polymerase A AL549_RS23785 PF01471 Putative peptidoglycan binding domain AL549_RS23785 PF13401 AAA domain AL549_RS23790 PF08239 Bacterial SH3 domain AL549_RS23795 PF01384 Phosphate transporter family