AL549_RS00045 SM00267 diguanylate cyclase AL549_RS00060 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS00100 SM00382 ATPases associated with a variety of cellular activities AL549_RS00155 SM00382 ATPases associated with a variety of cellular activities AL549_RS00165 SM00421 helix_turn_helix, Lux Regulon AL549_RS00170 SM00421 helix_turn_helix, Lux Regulon AL549_RS00180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS00180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS00200 SM00327 von Willebrand factor (vWF) type A domain AL549_RS00205 SM00028 Tetratricopeptide repeats AL549_RS00205 SM00327 von Willebrand factor (vWF) type A domain AL549_RS00215 SM00267 diguanylate cyclase AL549_RS00220 SM00382 ATPases associated with a variety of cellular activities AL549_RS00240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS00240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS00245 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS00245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS00275 SM00487 DEAD-like helicases superfamily AL549_RS00275 SM00490 helicase superfamily c-terminal domain AL549_RS00285 SM00257 Lysin motif AL549_RS00295 SM00422 helix_turn_helix, mercury resistance AL549_RS00315 SM00028 Tetratricopeptide repeats AL549_RS00320 SM00267 diguanylate cyclase AL549_RS00340 SM00382 ATPases associated with a variety of cellular activities AL549_RS00355 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL549_RS00355 SM00245 tail specific protease AL549_RS00375 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS00375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS00390 SM01057 Eukaryotic-type carbonic anhydrase AL549_RS00415 SM00382 ATPases associated with a variety of cellular activities AL549_RS00430 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS00430 SM00387 Histidine kinase-like ATPases AL549_RS00430 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS00430 SM00448 cheY-homologous receiver domain AL549_RS00435 SM00052 Putative diguanylate phosphodiesterase AL549_RS00435 SM00448 cheY-homologous receiver domain AL549_RS00440 SM00421 helix_turn_helix, Lux Regulon AL549_RS00440 SM00448 cheY-homologous receiver domain AL549_RS00445 SM00267 diguanylate cyclase AL549_RS00450 SM00421 helix_turn_helix, Lux Regulon AL549_RS00450 SM00448 cheY-homologous receiver domain AL549_RS00475 SM00849 Metallo-beta-lactamase superfamily AL549_RS00545 SM00829 Enoylreductase AL549_RS00600 SM01060 AL549_RS00600 AL549_RS00605 SM00248 ankyrin repeats AL549_RS00620 SM00481 DNA polymerase alpha chain like domain AL549_RS00630 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS00655 SM00267 diguanylate cyclase AL549_RS00655 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS00700 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS00775 SM00014 Acid phosphatase homologues AL549_RS00855 SM00448 cheY-homologous receiver domain AL549_RS00855 SM00862 Transcriptional regulatory protein, C terminal AL549_RS00860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS00860 SM00387 Histidine kinase-like ATPases AL549_RS00860 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS00885 SM00642 Alpha-amylase domain AL549_RS00895 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS00905 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS00905 SM00267 diguanylate cyclase AL549_RS00915 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS00940 SM00421 helix_turn_helix, Lux Regulon AL549_RS00960 SM00849 Metallo-beta-lactamase superfamily AL549_RS01045 SM00357 Cold shock protein domain AL549_RS01105 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS01135 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS01160 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS01175 SM00421 helix_turn_helix, Lux Regulon AL549_RS01195 SM00849 Metallo-beta-lactamase superfamily AL549_RS01200 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS01200 SM00382 ATPases associated with a variety of cellular activities AL549_RS01220 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS01220 SM00871 Bacterial transcription activator, effector binding domain AL549_RS01265 SM01038 Beta galactosidase small chain AL549_RS01275 SM00382 ATPases associated with a variety of cellular activities AL549_RS01285 SM00354 helix_turn _helix lactose operon repressor AL549_RS01305 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS01305 SM00267 diguanylate cyclase AL549_RS01360 SM01217 AL549_RS01360 AL549_RS01370 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS01390 SM00354 helix_turn _helix lactose operon repressor AL549_RS01400 SM00382 ATPases associated with a variety of cellular activities AL549_RS01405 SM00382 ATPases associated with a variety of cellular activities AL549_RS01430 SM00354 helix_turn _helix lactose operon repressor AL549_RS01435 SM00382 ATPases associated with a variety of cellular activities AL549_RS01460 SM00354 helix_turn _helix lactose operon repressor AL549_RS01480 SM00267 diguanylate cyclase AL549_RS01485 SM00448 cheY-homologous receiver domain AL549_RS01485 SM00862 Transcriptional regulatory protein, C terminal AL549_RS01490 SM00387 Histidine kinase-like ATPases AL549_RS01490 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS01520 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS01535 SM00052 Putative diguanylate phosphodiesterase AL549_RS01545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS01545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS01560 SM00495 Chitin-binding domain type 3 AL549_RS01575 SM00344 helix_turn_helix ASNC type AL549_RS01585 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_RS01590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS01590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS01590 SM01358 AL549_RS01590 AL549_RS01595 SM00642 Alpha-amylase domain AL549_RS01610 SM00421 helix_turn_helix, Lux Regulon AL549_RS01675 SM00671 Sel1-like repeats. AL549_RS01680 SM00642 Alpha-amylase domain AL549_RS01705 SM00642 Alpha-amylase domain AL549_RS01710 SM00267 diguanylate cyclase AL549_RS01715 SM00267 diguanylate cyclase AL549_RS01740 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins AL549_RS01740 SM00495 Chitin-binding domain type 3 AL549_RS01740 SM00636 AL549_RS01740 AL549_RS01785 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS01785 SM01009 AlkA N-terminal domain AL549_RS01810 SM01154 AL549_RS01810 AL549_RS01850 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS01850 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS01850 SM01049 AL549_RS01850 AL549_RS01855 SM00448 cheY-homologous receiver domain AL549_RS01855 SM00850 LytTr DNA-binding domain AL549_RS01860 SM00387 Histidine kinase-like ATPases AL549_RS01880 SM00382 ATPases associated with a variety of cellular activities AL549_RS01910 SM00387 Histidine kinase-like ATPases AL549_RS01910 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS01910 SM00448 cheY-homologous receiver domain AL549_RS01935 SM00382 ATPases associated with a variety of cellular activities AL549_RS01940 SM00382 ATPases associated with a variety of cellular activities AL549_RS01960 SM00470 ParB-like nuclease domain AL549_RS01975 SM00448 cheY-homologous receiver domain AL549_RS01980 SM00073 Histidine Phosphotransfer domain AL549_RS01980 SM00260 Two component signalling adaptor domain AL549_RS01980 SM00387 Histidine kinase-like ATPases AL549_RS01980 SM01231 AL549_RS01980 AL549_RS01985 SM00260 Two component signalling adaptor domain AL549_RS01990 SM00260 Two component signalling adaptor domain AL549_RS01995 SM00091 PAS domain AL549_RS01995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS01995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS02000 SM00138 Methyltransferase, chemotaxis proteins AL549_RS02010 SM00448 cheY-homologous receiver domain AL549_RS02015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS02025 SM00331 Sigma factor PP2C-like phosphatases AL549_RS02025 SM00448 cheY-homologous receiver domain AL549_RS02035 SM00248 ankyrin repeats AL549_RS02075 SM00855 Phosphoglycerate mutase family AL549_RS02080 SM00052 Putative diguanylate phosphodiesterase AL549_RS02115 SM00028 Tetratricopeptide repeats AL549_RS02120 SM01266 AL549_RS02120 AL549_RS02125 SM00883 Chaperonin 10 Kd subunit AL549_RS02145 SM00382 ATPases associated with a variety of cellular activities AL549_RS02150 SM00052 Putative diguanylate phosphodiesterase AL549_RS02150 SM00267 diguanylate cyclase AL549_RS02165 SM00448 cheY-homologous receiver domain AL549_RS02170 SM00387 Histidine kinase-like ATPases AL549_RS02170 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS02180 SM00421 helix_turn_helix, Lux Regulon AL549_RS02185 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS02210 SM00344 helix_turn_helix ASNC type AL549_RS02270 SM00382 ATPases associated with a variety of cellular activities AL549_RS02275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS02275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS02325 SM00382 ATPases associated with a variety of cellular activities AL549_RS02345 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AL549_RS02355 SM01007 Class II Aldolase and Adducin N-terminal domain AL549_RS02370 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_RS02370 SM01134 AL549_RS02370 AL549_RS02440 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS02440 SM00895 AL549_RS02440 AL549_RS02450 SM00487 DEAD-like helicases superfamily AL549_RS02450 SM00490 helicase superfamily c-terminal domain AL549_RS02465 SM00354 helix_turn _helix lactose operon repressor AL549_RS02500 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS02505 SM00829 Enoylreductase AL549_RS02530 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS02550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS02580 SM00671 Sel1-like repeats. AL549_RS02600 SM00849 Metallo-beta-lactamase superfamily AL549_RS02615 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS02625 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_RS02625 SM01134 AL549_RS02625 AL549_RS02635 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_RS02635 SM01134 AL549_RS02635 AL549_RS02680 SM00382 ATPases associated with a variety of cellular activities AL549_RS02690 SM00895 AL549_RS02690 AL549_RS02705 SM00382 ATPases associated with a variety of cellular activities AL549_RS02740 SM00382 ATPases associated with a variety of cellular activities AL549_RS02745 SM00479 AL549_RS02745 AL549_RS02765 SM00267 diguanylate cyclase AL549_RS02800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS02800 SM00387 Histidine kinase-like ATPases AL549_RS02800 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS02805 SM00448 cheY-homologous receiver domain AL549_RS02805 SM00862 Transcriptional regulatory protein, C terminal AL549_RS02815 SM00849 Metallo-beta-lactamase superfamily AL549_RS02825 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_RS02825 SM00387 Histidine kinase-like ATPases AL549_RS02830 SM00382 ATPases associated with a variety of cellular activities AL549_RS02830 SM00448 cheY-homologous receiver domain AL549_RS02855 SM00448 cheY-homologous receiver domain AL549_RS02855 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS02860 SM00073 Histidine Phosphotransfer domain AL549_RS02860 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_RS02860 SM00091 PAS domain AL549_RS02860 SM00387 Histidine kinase-like ATPases AL549_RS02860 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS02860 SM00448 cheY-homologous receiver domain AL549_RS02865 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS02865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS02920 SM00487 DEAD-like helicases superfamily AL549_RS02920 SM00490 helicase superfamily c-terminal domain AL549_RS02985 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS03045 SM00838 Elongation factor G C-terminus AL549_RS03045 SM00889 Elongation factor G, domain IV AL549_RS03060 SM00267 diguanylate cyclase AL549_RS03060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS03075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS03075 SM00387 Histidine kinase-like ATPases AL549_RS03080 SM00448 cheY-homologous receiver domain AL549_RS03080 SM00862 Transcriptional regulatory protein, C terminal AL549_RS03095 SM00422 helix_turn_helix, mercury resistance AL549_RS03105 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS03120 SM00387 Histidine kinase-like ATPases AL549_RS03120 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS03120 SM00448 cheY-homologous receiver domain AL549_RS03185 SM00479 AL549_RS03185 AL549_RS03190 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS03195 SM00346 helix_turn_helix isocitrate lyase regulation AL549_RS03280 SM00642 Alpha-amylase domain AL549_RS03335 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL549_RS03370 SM00028 Tetratricopeptide repeats AL549_RS03375 SM00849 Metallo-beta-lactamase superfamily AL549_RS03410 SM00421 helix_turn_helix, Lux Regulon AL549_RS03435 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_RS03435 SM00091 PAS domain AL549_RS03435 SM00267 diguanylate cyclase AL549_RS03440 SM00382 ATPases associated with a variety of cellular activities AL549_RS03455 SM01091 Transporter associated domain AL549_RS03485 SM00354 helix_turn _helix lactose operon repressor AL549_RS03505 SM00382 ATPases associated with a variety of cellular activities AL549_RS03550 SM00849 Metallo-beta-lactamase superfamily AL549_RS03595 SM00830 Chorismate mutase type II AL549_RS03635 SM00823 Phosphopantetheine attachment site AL549_RS03655 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS03660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS03660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS03665 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS03675 SM00052 Putative diguanylate phosphodiesterase AL549_RS03680 SM00495 Chitin-binding domain type 3 AL549_RS03700 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS03705 SM00382 ATPases associated with a variety of cellular activities AL549_RS03725 SM00052 Putative diguanylate phosphodiesterase AL549_RS03735 SM00849 Metallo-beta-lactamase superfamily AL549_RS03765 SM00563 Phosphate acyltransferases AL549_RS03770 SM00327 von Willebrand factor (vWF) type A domain AL549_RS03770 SM00609 Vault protein Inter-alpha-Trypsin domain AL549_RS03815 SM00382 ATPases associated with a variety of cellular activities AL549_RS03840 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS03840 SM00871 Bacterial transcription activator, effector binding domain AL549_RS03845 SM00924 MgtE intracellular N domain AL549_RS03860 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS03870 SM00448 cheY-homologous receiver domain AL549_RS03870 SM00862 Transcriptional regulatory protein, C terminal AL549_RS03875 SM00387 Histidine kinase-like ATPases AL549_RS03875 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS03885 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS03905 SM00344 helix_turn_helix ASNC type AL549_RS03925 SM00788 Adenylosuccinate synthetase AL549_RS03940 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_RS03955 SM00387 Histidine kinase-like ATPases AL549_RS03955 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS03955 SM00448 cheY-homologous receiver domain AL549_RS03995 SM00387 Histidine kinase-like ATPases AL549_RS03995 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS03995 SM00448 cheY-homologous receiver domain AL549_RS04010 SM00344 helix_turn_helix ASNC type AL549_RS04050 SM00822 AL549_RS04050 AL549_RS04105 SM01130 AL549_RS04105 AL549_RS04140 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS04155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS04155 SM00387 Histidine kinase-like ATPases AL549_RS04160 SM00421 helix_turn_helix, Lux Regulon AL549_RS04160 SM00448 cheY-homologous receiver domain AL549_RS04170 SM00448 cheY-homologous receiver domain AL549_RS04190 SM01240 AL549_RS04190 AL549_RS04280 SM00487 DEAD-like helicases superfamily AL549_RS04280 SM00490 helicase superfamily c-terminal domain AL549_RS04295 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_RS04330 SM00382 ATPases associated with a variety of cellular activities AL549_RS04345 SM01119 AL549_RS04345 AL549_RS04380 SM00052 Putative diguanylate phosphodiesterase AL549_RS04380 SM00267 diguanylate cyclase AL549_RS04410 SM00052 Putative diguanylate phosphodiesterase AL549_RS04410 SM00267 diguanylate cyclase AL549_RS04435 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_RS04455 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS04530 SM00091 PAS domain AL549_RS04530 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS04535 SM00052 Putative diguanylate phosphodiesterase AL549_RS04535 SM00267 diguanylate cyclase AL549_RS04535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS04545 SM00861 Transketolase, pyrimidine binding domain AL549_RS04560 SM00636 AL549_RS04560 AL549_RS04565 SM00052 Putative diguanylate phosphodiesterase AL549_RS04565 SM00267 diguanylate cyclase AL549_RS04570 SM00450 Rhodanese Homology Domain AL549_RS04585 SM00852 Probable molybdopterin binding domain AL549_RS04660 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS04660 SM01358 AL549_RS04660 AL549_RS04695 SM01322 AL549_RS04695 AL549_RS04700 SM00357 Cold shock protein domain AL549_RS04715 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS04715 SM00267 diguanylate cyclase AL549_RS04735 SM00387 Histidine kinase-like ATPases AL549_RS04740 SM00421 helix_turn_helix, Lux Regulon AL549_RS04740 SM00448 cheY-homologous receiver domain AL549_RS04760 SM00829 Enoylreductase AL549_RS04780 SM00357 Cold shock protein domain AL549_RS04815 SM00422 helix_turn_helix, mercury resistance AL549_RS04850 SM00822 AL549_RS04850 AL549_RS04870 SM00382 ATPases associated with a variety of cellular activities AL549_RS04880 SM00382 ATPases associated with a variety of cellular activities AL549_RS04900 SM01005 Alanine racemase, C-terminal domain AL549_RS04905 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS04905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS04915 SM00893 Electron transfer flavoprotein domain AL549_RS04920 SM00893 Electron transfer flavoprotein domain AL549_RS04930 SM00861 Transketolase, pyrimidine binding domain AL549_RS04950 SM00448 cheY-homologous receiver domain AL549_RS04950 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS04955 SM00387 Histidine kinase-like ATPases AL549_RS05005 SM00052 Putative diguanylate phosphodiesterase AL549_RS05005 SM00267 diguanylate cyclase AL549_RS05040 SM00220 Serine/Threonine protein kinases, catalytic domain AL549_RS05045 SM00240 Forkhead associated domain AL549_RS05075 SM00331 Sigma factor PP2C-like phosphatases AL549_RS05075 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AL549_RS05120 SM00382 ATPases associated with a variety of cellular activities AL549_RS05120 SM01086 C-terminal, D2-small domain, of ClpB protein AL549_RS05245 SM00458 Ricin-type beta-trefoil AL549_RS05255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS05255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS05260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05265 SM00642 Alpha-amylase domain AL549_RS05275 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS05295 SM01012 AL549_RS05295 AL549_RS05310 SM00382 ATPases associated with a variety of cellular activities AL549_RS05330 SM00028 Tetratricopeptide repeats AL549_RS05330 SM00267 diguanylate cyclase AL549_RS05340 SM00833 Cobalamin synthesis protein cobW C-terminal domain AL549_RS05350 SM00487 DEAD-like helicases superfamily AL549_RS05350 SM00490 helicase superfamily c-terminal domain AL549_RS05365 SM00267 diguanylate cyclase AL549_RS05365 SM00448 cheY-homologous receiver domain AL549_RS05375 SM00138 Methyltransferase, chemotaxis proteins AL549_RS05380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05380 SM00387 Histidine kinase-like ATPases AL549_RS05380 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS05380 SM00448 cheY-homologous receiver domain AL549_RS05405 SM00091 PAS domain AL549_RS05405 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS05465 SM00028 Tetratricopeptide repeats AL549_RS05475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS05475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05475 SM01049 AL549_RS05475 AL549_RS05495 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS05525 SM00450 Rhodanese Homology Domain AL549_RS05535 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL549_RS05575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS05575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05620 SM00382 ATPases associated with a variety of cellular activities AL549_RS05630 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_RS05640 SM00267 diguanylate cyclase AL549_RS05640 SM00448 cheY-homologous receiver domain AL549_RS05650 SM00267 diguanylate cyclase AL549_RS05665 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL549_RS05665 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL549_RS05675 SM00387 Histidine kinase-like ATPases AL549_RS05675 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS05680 SM00448 cheY-homologous receiver domain AL549_RS05680 SM00862 Transcriptional regulatory protein, C terminal AL549_RS05725 SM00881 CoA binding domain AL549_RS05740 SM00091 PAS domain AL549_RS05740 SM00267 diguanylate cyclase AL549_RS05740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS05755 SM00796 Allophanate hydrolase subunit 1 AL549_RS05760 SM00797 Allophanate hydrolase subunit 2 AL549_RS05775 SM00382 ATPases associated with a variety of cellular activities AL549_RS05790 SM00052 Putative diguanylate phosphodiesterase AL549_RS05790 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS05790 SM00267 diguanylate cyclase AL549_RS05805 SM00271 DnaJ molecular chaperone homology domain AL549_RS05830 SM00642 Alpha-amylase domain AL549_RS05875 SM00782 PhnA Zinc-Ribbon AL549_RS05925 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS05930 SM00867 YceI-like domain AL549_RS05945 SM00052 Putative diguanylate phosphodiesterase AL549_RS05950 SM00487 DEAD-like helicases superfamily AL549_RS05950 SM00490 helicase superfamily c-terminal domain AL549_RS05960 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS05975 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS06005 SM00495 Chitin-binding domain type 3 AL549_RS06005 SM00636 AL549_RS06005 AL549_RS06010 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS06020 SM00448 cheY-homologous receiver domain AL549_RS06025 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS06025 SM00387 Histidine kinase-like ATPases AL549_RS06025 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS06045 SM00052 Putative diguanylate phosphodiesterase AL549_RS06065 SM00354 helix_turn _helix lactose operon repressor AL549_RS06110 SM00020 Trypsin-like serine protease AL549_RS06120 SM00530 Helix-turn-helix XRE-family like proteins AL549_RS06155 SM00382 ATPases associated with a variety of cellular activities AL549_RS06215 SM00990 AL549_RS06215 AL549_RS06220 SM00028 Tetratricopeptide repeats AL549_RS06255 SM00327 von Willebrand factor (vWF) type A domain AL549_RS06300 SM00487 DEAD-like helicases superfamily AL549_RS06300 SM00490 helicase superfamily c-terminal domain AL549_RS06305 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_RS06305 SM00357 Cold shock protein domain AL549_RS06305 SM00955 AL549_RS06305 AL549_RS06310 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS06325 SM00635 Bacterial Ig-like domain 2 AL549_RS06330 SM00052 Putative diguanylate phosphodiesterase AL549_RS06330 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS06330 SM00267 diguanylate cyclase AL549_RS06340 SM00448 cheY-homologous receiver domain AL549_RS06345 SM00052 Putative diguanylate phosphodiesterase AL549_RS06345 SM00421 helix_turn_helix, Lux Regulon AL549_RS06345 SM00448 cheY-homologous receiver domain AL549_RS06350 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS06350 SM00387 Histidine kinase-like ATPases AL549_RS06350 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS06350 SM00448 cheY-homologous receiver domain AL549_RS06355 SM00487 DEAD-like helicases superfamily AL549_RS06355 SM00490 helicase superfamily c-terminal domain AL549_RS06405 SM00073 Histidine Phosphotransfer domain AL549_RS06405 SM00387 Histidine kinase-like ATPases AL549_RS06405 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS06405 SM00448 cheY-homologous receiver domain AL549_RS06415 SM00851 MGS-like domain AL549_RS06455 SM00422 helix_turn_helix, mercury resistance AL549_RS06460 SM00382 ATPases associated with a variety of cellular activities AL549_RS06490 SM01266 AL549_RS06490 AL549_RS06495 SM00448 cheY-homologous receiver domain AL549_RS06500 SM00091 PAS domain AL549_RS06500 SM00387 Histidine kinase-like ATPases AL549_RS06545 SM00327 von Willebrand factor (vWF) type A domain AL549_RS06635 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_RS06635 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS06655 SM00260 Two component signalling adaptor domain AL549_RS06655 SM00448 cheY-homologous receiver domain AL549_RS06665 SM00354 helix_turn _helix lactose operon repressor AL549_RS06685 SM00382 ATPases associated with a variety of cellular activities AL549_RS06710 SM00327 von Willebrand factor (vWF) type A domain AL549_RS06715 SM00382 ATPases associated with a variety of cellular activities AL549_RS06750 SM00014 Acid phosphatase homologues AL549_RS06755 SM01022 AL549_RS06755 AL549_RS06780 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS06780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS06855 SM00450 Rhodanese Homology Domain AL549_RS06940 SM00382 ATPases associated with a variety of cellular activities AL549_RS06970 SM00028 Tetratricopeptide repeats AL549_RS06985 SM00936 Penicillin-binding protein 5, C-terminal domain AL549_RS07035 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS07035 SM00866 AL549_RS07035 AL549_RS07045 SM00382 ATPases associated with a variety of cellular activities AL549_RS07075 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS07075 SM00871 Bacterial transcription activator, effector binding domain AL549_RS07090 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS07100 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS07125 SM01266 AL549_RS07125 AL549_RS07140 SM00267 diguanylate cyclase AL549_RS07150 SM00530 Helix-turn-helix XRE-family like proteins AL549_RS07155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS07155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS07160 SM00267 diguanylate cyclase AL549_RS07160 SM01079 AL549_RS07160 AL549_RS07255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS07255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS07260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS07260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS07265 SM00642 Alpha-amylase domain AL549_RS07280 SM00260 Two component signalling adaptor domain AL549_RS07280 SM00448 cheY-homologous receiver domain AL549_RS07300 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_RS07330 SM00382 ATPases associated with a variety of cellular activities AL549_RS07355 SM00880 AL549_RS07355 AL549_RS07355 SM01118 AL549_RS07355 AL549_RS07365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS07405 SM00387 Histidine kinase-like ATPases AL549_RS07405 SM00433 TopoisomeraseII AL549_RS07410 SM00434 DNA Topoisomerase IV AL549_RS07415 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL549_RS07420 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL549_RS07475 SM00749 bacterial OsmY and nodulation domain AL549_RS07560 SM00842 Cell division protein FtsA AL549_RS07565 SM00864 Tubulin/FtsZ family, GTPase domain AL549_RS07565 SM00865 Tubulin/FtsZ family, C-terminal domain AL549_RS07580 SM00957 SecA DEAD-like domain AL549_RS07580 SM00958 SecA preprotein cross-linking domain AL549_RS07595 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AL549_RS07600 SM00851 MGS-like domain AL549_RS07600 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL549_RS07670 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_RS07675 SM00091 PAS domain AL549_RS07675 SM00267 diguanylate cyclase AL549_RS07680 SM00073 Histidine Phosphotransfer domain AL549_RS07680 SM00091 PAS domain AL549_RS07680 SM00387 Histidine kinase-like ATPases AL549_RS07680 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS07680 SM00448 cheY-homologous receiver domain AL549_RS07690 SM00448 cheY-homologous receiver domain AL549_RS07690 SM00862 Transcriptional regulatory protein, C terminal AL549_RS07735 SM00518 AP endonuclease family 2 AL549_RS07740 SM00986 Uracil DNA glycosylase superfamily AL549_RS07740 SM00987 UreE urease accessory protein, C-terminal domain AL549_RS07765 SM00487 DEAD-like helicases superfamily AL549_RS07765 SM00490 helicase superfamily c-terminal domain AL549_RS07810 SM00382 ATPases associated with a variety of cellular activities AL549_RS07830 SM00927 DNA mismatch repair enzyme MutH AL549_RS07840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS07860 SM01154 AL549_RS07860 AL549_RS07875 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL549_RS07890 SM00904 Riboflavin kinase AL549_RS07915 SM00448 cheY-homologous receiver domain AL549_RS07915 SM00850 LytTr DNA-binding domain AL549_RS07960 SM00830 Chorismate mutase type II AL549_RS07975 SM00382 ATPases associated with a variety of cellular activities AL549_RS07995 SM00830 Chorismate mutase type II AL549_RS08010 SM00363 S4 RNA-binding domain AL549_RS08020 SM00382 ATPases associated with a variety of cellular activities AL549_RS08020 SM01086 C-terminal, D2-small domain, of ClpB protein AL549_RS08075 SM00448 cheY-homologous receiver domain AL549_RS08075 SM00862 Transcriptional regulatory protein, C terminal AL549_RS08080 SM00091 PAS domain AL549_RS08080 SM00387 Histidine kinase-like ATPases AL549_RS08080 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS08110 SM00382 ATPases associated with a variety of cellular activities AL549_RS08170 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS08175 SM00020 Trypsin-like serine protease AL549_RS08190 SM01323 AL549_RS08190 AL549_RS08245 SM00271 DnaJ molecular chaperone homology domain AL549_RS08270 SM00562 AL549_RS08270 AL549_RS08300 SM00564 beta-propeller repeat AL549_RS08305 SM00173 Ras subfamily of RAS small GTPases AL549_RS08305 SM00382 ATPases associated with a variety of cellular activities AL549_RS08315 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS08315 SM00267 diguanylate cyclase AL549_RS08330 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS08330 SM01240 AL549_RS08330 AL549_RS08340 SM00495 Chitin-binding domain type 3 AL549_RS08410 SM00563 Phosphate acyltransferases AL549_RS08415 SM00530 Helix-turn-helix XRE-family like proteins AL549_RS08495 SM00271 DnaJ molecular chaperone homology domain AL549_RS08535 SM00829 Enoylreductase AL549_RS08555 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS08560 SM01211 AL549_RS08560 AL549_RS08610 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL549_RS08660 SM00861 Transketolase, pyrimidine binding domain AL549_RS08685 SM00981 AL549_RS08685 AL549_RS08710 SM00477 DNA/RNA non-specific endonuclease AL549_RS08710 SM00892 DNA/RNA non-specific endonuclease AL549_RS08715 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL549_RS08715 SM00475 5'-3' exonuclease AL549_RS08725 SM00267 diguanylate cyclase AL549_RS08730 SM00028 Tetratricopeptide repeats AL549_RS08760 SM00382 ATPases associated with a variety of cellular activities AL549_RS08760 SM00930 AL549_RS08760 AL549_RS08770 SM00354 helix_turn _helix lactose operon repressor AL549_RS08780 SM00642 Alpha-amylase domain AL549_RS08800 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_RS08815 SM00936 Penicillin-binding protein 5, C-terminal domain AL549_RS08870 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS08870 SM01091 Transporter associated domain AL549_RS08885 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_RS08985 SM01400 AL549_RS08985 AL549_RS09005 SM00937 AL549_RS09005 AL549_RS09040 SM00363 S4 RNA-binding domain AL549_RS09045 SM00463 Small MutS-related domain AL549_RS09065 SM01081 Putative carbohydrate binding domain AL549_RS09135 SM00858 AL549_RS09135 AL549_RS09140 SM00260 Two component signalling adaptor domain AL549_RS09140 SM00448 cheY-homologous receiver domain AL549_RS09145 SM00138 Methyltransferase, chemotaxis proteins AL549_RS09190 SM00047 Lysozyme subfamily 2 AL549_RS09245 SM00771 ZipA, C-terminal domain (FtsZ-binding) AL549_RS09250 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL549_RS09250 SM00292 breast cancer carboxy-terminal domain AL549_RS09250 SM00532 Ligase N family AL549_RS09270 SM00244 prohibitin homologues AL549_RS09305 SM00938 Nitrogen regulatory protein P-II AL549_RS09310 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS09335 SM00862 Transcriptional regulatory protein, C terminal AL549_RS09340 SM00387 Histidine kinase-like ATPases AL549_RS09355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS09355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS09355 SM01358 AL549_RS09355 AL549_RS09365 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL549_RS09490 SM00861 Transketolase, pyrimidine binding domain AL549_RS09505 SM00881 CoA binding domain AL549_RS09515 SM00382 ATPases associated with a variety of cellular activities AL549_RS09525 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS09530 SM00899 AL549_RS09530 AL549_RS09550 SM00836 DALR anticodon binding domain AL549_RS09550 SM01016 Arginyl tRNA synthetase N terminal dom AL549_RS09570 SM00487 DEAD-like helicases superfamily AL549_RS09570 SM00491 AL549_RS09570 AL549_RS09600 SM00474 3'-5' exonuclease AL549_RS09645 SM00448 cheY-homologous receiver domain AL549_RS09645 SM00862 Transcriptional regulatory protein, C terminal AL549_RS09650 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS09660 SM00825 Beta-ketoacyl synthase AL549_RS09675 SM00825 Beta-ketoacyl synthase AL549_RS09735 SM00563 Phosphate acyltransferases AL549_RS09770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS09770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS09780 SM00448 cheY-homologous receiver domain AL549_RS09780 SM00862 Transcriptional regulatory protein, C terminal AL549_RS09785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS09785 SM00387 Histidine kinase-like ATPases AL549_RS09805 SM00382 ATPases associated with a variety of cellular activities AL549_RS09830 SM00382 ATPases associated with a variety of cellular activities AL549_RS09830 SM00448 cheY-homologous receiver domain AL549_RS09835 SM00387 Histidine kinase-like ATPases AL549_RS09835 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS09850 SM00382 ATPases associated with a variety of cellular activities AL549_RS09850 SM00994 ClpX C4-type zinc finger AL549_RS09850 SM01086 C-terminal, D2-small domain, of ClpB protein AL549_RS09855 SM00382 ATPases associated with a variety of cellular activities AL549_RS09855 SM00464 Found in ATP-dependent protease La (LON) AL549_RS09860 SM00411 bacterial (prokaryotic) histone like domain AL549_RS09880 SM01144 AL549_RS09880 AL549_RS09885 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS09890 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS09920 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AL549_RS09935 SM00563 Phosphate acyltransferases AL549_RS09945 SM00978 AL549_RS09945 AL549_RS10005 SM00344 helix_turn_helix ASNC type AL549_RS10035 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS10035 SM00267 diguanylate cyclase AL549_RS10065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS10075 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_RS10095 SM00870 AL549_RS10095 AL549_RS10115 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL549_RS10115 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL549_RS10115 SM00493 AL549_RS10115 AL549_RS10125 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_RS10125 SM00387 Histidine kinase-like ATPases AL549_RS10125 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS10125 SM00448 cheY-homologous receiver domain AL549_RS10130 SM00267 diguanylate cyclase AL549_RS10130 SM00448 cheY-homologous receiver domain AL549_RS10135 SM00155 Phospholipase D. Active site motifs. AL549_RS10190 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL549_RS10245 SM00479 AL549_RS10245 AL549_RS10265 SM00478 endonuclease III AL549_RS10265 SM00525 AL549_RS10265 AL549_RS10275 SM00900 AL549_RS10275 AL549_RS10305 SM00487 DEAD-like helicases superfamily AL549_RS10305 SM00490 helicase superfamily c-terminal domain AL549_RS10310 SM00382 ATPases associated with a variety of cellular activities AL549_RS10310 SM00448 cheY-homologous receiver domain AL549_RS10325 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_RS10330 SM00852 Probable molybdopterin binding domain AL549_RS10365 SM00382 ATPases associated with a variety of cellular activities AL549_RS10370 SM00382 ATPases associated with a variety of cellular activities AL549_RS10445 SM00481 DNA polymerase alpha chain like domain AL549_RS10460 SM00363 S4 RNA-binding domain AL549_RS10470 SM00841 Elongation factor P, C-terminal AL549_RS10470 SM01185 AL549_RS10470 AL549_RS10480 SM00052 Putative diguanylate phosphodiesterase AL549_RS10485 SM00486 DNA polymerase type-B family AL549_RS10490 SM00421 helix_turn_helix, Lux Regulon AL549_RS10490 SM00448 cheY-homologous receiver domain AL549_RS10495 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL549_RS10495 SM00465 GIY-YIG type nucleases (URI domain) AL549_RS10550 SM00852 Probable molybdopterin binding domain AL549_RS10580 SM00434 DNA Topoisomerase IV AL549_RS10655 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS10665 SM00226 Low molecular weight phosphatase family AL549_RS10675 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_RS10680 SM00363 S4 RNA-binding domain AL549_RS10710 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AL549_RS10715 SM00822 AL549_RS10715 AL549_RS10725 SM00825 Beta-ketoacyl synthase AL549_RS10800 SM00260 Two component signalling adaptor domain AL549_RS10800 SM00448 cheY-homologous receiver domain AL549_RS10805 SM00481 DNA polymerase alpha chain like domain AL549_RS10820 SM00822 AL549_RS10820 AL549_RS10835 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_RS10840 SM00411 bacterial (prokaryotic) histone like domain AL549_RS10850 SM00028 Tetratricopeptide repeats AL549_RS10855 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AL549_RS10875 SM00382 ATPases associated with a variety of cellular activities AL549_RS10880 SM00382 ATPases associated with a variety of cellular activities AL549_RS10930 SM00849 Metallo-beta-lactamase superfamily AL549_RS10970 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AL549_RS10970 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AL549_RS10975 SM00344 helix_turn_helix ASNC type AL549_RS10980 SM00843 AL549_RS10980 AL549_RS10990 SM00382 ATPases associated with a variety of cellular activities AL549_RS11005 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_RS11005 SM00876 Biotin and Thiamin Synthesis associated domain AL549_RS11100 SM00528 Domain in histone-like proteins of HNS family AL549_RS11155 SM00052 Putative diguanylate phosphodiesterase AL549_RS11170 SM00840 AL549_RS11170 AL549_RS11260 SM01131 AL549_RS11260 AL549_RS11275 SM00382 ATPases associated with a variety of cellular activities AL549_RS11280 SM00382 ATPases associated with a variety of cellular activities AL549_RS11300 SM00382 ATPases associated with a variety of cellular activities AL549_RS11345 SM00155 Phospholipase D. Active site motifs. AL549_RS11355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS11355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS11380 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AL549_RS11380 SM00382 ATPases associated with a variety of cellular activities AL549_RS11390 SM00382 ATPases associated with a variety of cellular activities AL549_RS11425 SM00267 diguanylate cyclase AL549_RS11445 SM00387 Histidine kinase-like ATPases AL549_RS11450 SM00448 cheY-homologous receiver domain AL549_RS11450 SM00862 Transcriptional regulatory protein, C terminal AL549_RS11460 SM00487 DEAD-like helicases superfamily AL549_RS11460 SM00490 helicase superfamily c-terminal domain AL549_RS11465 SM00363 S4 RNA-binding domain AL549_RS11490 SM00382 ATPases associated with a variety of cellular activities AL549_RS11575 SM00448 cheY-homologous receiver domain AL549_RS11580 SM00387 Histidine kinase-like ATPases AL549_RS11595 SM00382 ATPases associated with a variety of cellular activities AL549_RS11600 SM00382 ATPases associated with a variety of cellular activities AL549_RS11625 SM00267 diguanylate cyclase AL549_RS11640 SM00919 Malic enzyme, NAD binding domain AL549_RS11640 SM01274 AL549_RS11640 AL549_RS11645 SM00487 DEAD-like helicases superfamily AL549_RS11645 SM00490 helicase superfamily c-terminal domain AL549_RS11645 SM00847 Helicase associated domain (HA2) Add an annotation AL549_RS11710 SM00855 Phosphoglycerate mutase family AL549_RS11730 SM00382 ATPases associated with a variety of cellular activities AL549_RS11775 SM00028 Tetratricopeptide repeats AL549_RS11815 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS11845 SM00267 diguanylate cyclase AL549_RS11850 SM00357 Cold shock protein domain AL549_RS11870 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_RS11870 SM01134 AL549_RS11870 AL549_RS11875 SM00382 ATPases associated with a variety of cellular activities AL549_RS11895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS11900 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS11900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS11910 SM00421 helix_turn_helix, Lux Regulon AL549_RS11950 SM00487 DEAD-like helicases superfamily AL549_RS11965 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS11965 SM00895 AL549_RS11965 AL549_RS12000 SM00020 Trypsin-like serine protease AL549_RS12000 SM00495 Chitin-binding domain type 3 AL549_RS12010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS12010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS12030 SM00028 Tetratricopeptide repeats AL549_RS12030 SM00267 diguanylate cyclase AL549_RS12050 SM00327 von Willebrand factor (vWF) type A domain AL549_RS12055 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AL549_RS12060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS12085 SM00382 ATPases associated with a variety of cellular activities AL549_RS12100 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS12120 SM00563 Phosphate acyltransferases AL549_RS12150 SM00421 helix_turn_helix, Lux Regulon AL549_RS12180 SM00091 PAS domain AL549_RS12180 SM00387 Histidine kinase-like ATPases AL549_RS12185 SM00448 cheY-homologous receiver domain AL549_RS12200 SM01350 AL549_RS12200 AL549_RS12290 SM00382 ATPases associated with a variety of cellular activities AL549_RS12290 SM00448 cheY-homologous receiver domain AL549_RS12295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS12295 SM00387 Histidine kinase-like ATPases AL549_RS12295 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS12295 SM00448 cheY-homologous receiver domain AL549_RS12330 SM00028 Tetratricopeptide repeats AL549_RS12330 SM00267 diguanylate cyclase AL549_RS12375 SM00382 ATPases associated with a variety of cellular activities AL549_RS12385 SM00945 ProQ/FINO family AL549_RS12390 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AL549_RS12390 SM00245 tail specific protease AL549_RS12425 SM00981 AL549_RS12425 AL549_RS12435 SM00382 ATPases associated with a variety of cellular activities AL549_RS12480 SM00387 Histidine kinase-like ATPases AL549_RS12480 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS12480 SM00448 cheY-homologous receiver domain AL549_RS12485 SM00897 FIST N domain AL549_RS12485 SM01204 AL549_RS12485 AL549_RS12535 SM00100 Cyclic nucleotide-monophosphate binding domain AL549_RS12535 SM00419 helix_turn_helix, cAMP Regulatory protein AL549_RS12570 SM00382 ATPases associated with a variety of cellular activities AL549_RS12640 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AL549_RS12675 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS12675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS12680 SM00382 ATPases associated with a variety of cellular activities AL549_RS12695 SM00387 Histidine kinase-like ATPases AL549_RS12695 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS12700 SM00382 ATPases associated with a variety of cellular activities AL549_RS12700 SM00448 cheY-homologous receiver domain AL549_RS12715 SM00382 ATPases associated with a variety of cellular activities AL549_RS12725 SM00852 Probable molybdopterin binding domain AL549_RS12740 SM01144 AL549_RS12740 AL549_RS12750 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS12765 SM00267 diguanylate cyclase AL549_RS12770 SM00448 cheY-homologous receiver domain AL549_RS13205 SM01040 BRO family, N-terminal domain AL549_RS13820 SM01022 AL549_RS13820 AL549_RS14430 SM00507 HNH nucleases AL549_RS14555 SM01022 AL549_RS14555 AL549_RS14700 SM00974 AL549_RS14700 AL549_RS14835 SM01022 AL549_RS14835 AL549_RS14955 SM01321 AL549_RS14955 AL549_RS15345 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL549_RS15360 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS15360 SM00866 AL549_RS15360 AL549_RS15390 SM00020 Trypsin-like serine protease AL549_RS15420 SM00671 Sel1-like repeats. AL549_RS15445 SM00954 Region found in RelA / SpoT proteins AL549_RS15450 SM00411 bacterial (prokaryotic) histone like domain AL549_RS15470 SM00873 B3/4 domain AL549_RS15470 SM00874 tRNA synthetase B5 domain AL549_RS15470 SM00896 Ferredoxin-fold anticodon binding domain AL549_RS15480 SM00267 diguanylate cyclase AL549_RS15515 SM00530 Helix-turn-helix XRE-family like proteins AL549_RS15550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS15550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS15580 SM00448 cheY-homologous receiver domain AL549_RS15580 SM00850 LytTr DNA-binding domain AL549_RS15615 SM00382 ATPases associated with a variety of cellular activities AL549_RS15615 SM00487 DEAD-like helicases superfamily AL549_RS15615 SM00490 helicase superfamily c-terminal domain AL549_RS15615 SM00847 Helicase associated domain (HA2) Add an annotation AL549_RS15625 SM00636 AL549_RS15625 AL549_RS15650 SM00028 Tetratricopeptide repeats AL549_RS15685 SM00858 AL549_RS15685 AL549_RS15725 SM00479 AL549_RS15725 AL549_RS15730 SM00267 diguanylate cyclase AL549_RS15730 SM01079 AL549_RS15730 AL549_RS15760 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS15775 SM00267 diguanylate cyclase AL549_RS15850 SM00382 ATPases associated with a variety of cellular activities AL549_RS15855 SM00382 ATPases associated with a variety of cellular activities AL549_RS15890 SM00046 Diacylglycerol kinase catalytic domain (presumed) AL549_RS15905 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS15910 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AL549_RS15935 SM00052 Putative diguanylate phosphodiesterase AL549_RS15935 SM00267 diguanylate cyclase AL549_RS15940 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS15950 SM00052 Putative diguanylate phosphodiesterase AL549_RS15950 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AL549_RS15950 SM00267 diguanylate cyclase AL549_RS15955 SM00267 diguanylate cyclase AL549_RS15960 SM00448 cheY-homologous receiver domain AL549_RS15965 SM00100 Cyclic nucleotide-monophosphate binding domain AL549_RS15965 SM00387 Histidine kinase-like ATPases AL549_RS15990 SM00091 PAS domain AL549_RS15990 SM00382 ATPases associated with a variety of cellular activities AL549_RS16025 SM00387 Histidine kinase-like ATPases AL549_RS16025 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS16025 SM00448 cheY-homologous receiver domain AL549_RS16050 SM00052 Putative diguanylate phosphodiesterase AL549_RS16065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS16065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS16080 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS16095 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS16110 SM00100 Cyclic nucleotide-monophosphate binding domain AL549_RS16110 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS16115 SM00479 AL549_RS16115 AL549_RS16120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS16120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS16130 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_RS16135 SM00421 helix_turn_helix, Lux Regulon AL549_RS16135 SM00448 cheY-homologous receiver domain AL549_RS16140 SM00387 Histidine kinase-like ATPases AL549_RS16140 SM01049 AL549_RS16140 AL549_RS16175 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS16200 SM00267 diguanylate cyclase AL549_RS16205 SM00642 Alpha-amylase domain AL549_RS16210 SM00382 ATPases associated with a variety of cellular activities AL549_RS16260 SM00052 Putative diguanylate phosphodiesterase AL549_RS16260 SM00091 PAS domain AL549_RS16265 SM00052 Putative diguanylate phosphodiesterase AL549_RS16265 SM00091 PAS domain AL549_RS16270 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_RS16275 SM00052 Putative diguanylate phosphodiesterase AL549_RS16275 SM00267 diguanylate cyclase AL549_RS16275 SM01049 AL549_RS16275 AL549_RS16290 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS16320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS16360 SM00530 Helix-turn-helix XRE-family like proteins AL549_RS16375 SM00487 DEAD-like helicases superfamily AL549_RS16375 SM00490 helicase superfamily c-terminal domain AL549_RS16390 SM00387 Histidine kinase-like ATPases AL549_RS16390 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS16390 SM00448 cheY-homologous receiver domain AL549_RS16425 SM00028 Tetratricopeptide repeats AL549_RS16480 SM00382 ATPases associated with a variety of cellular activities AL549_RS16485 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AL549_RS16490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS16545 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS16575 SM00448 cheY-homologous receiver domain AL549_RS16575 SM00862 Transcriptional regulatory protein, C terminal AL549_RS16585 SM00354 helix_turn _helix lactose operon repressor AL549_RS16625 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AL549_RS16625 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AL549_RS16625 SM00493 AL549_RS16625 AL549_RS16655 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_RS16660 SM00382 ATPases associated with a variety of cellular activities AL549_RS16660 SM01086 C-terminal, D2-small domain, of ClpB protein AL549_RS16670 SM00357 Cold shock protein domain AL549_RS16695 SM00491 AL549_RS16695 AL549_RS16715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS16715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS16725 SM01276 AL549_RS16725 AL549_RS16740 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS16740 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AL549_RS16745 SM00382 ATPases associated with a variety of cellular activities AL549_RS16770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS16770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS16790 SM00763 PrkA AAA domain AL549_RS16805 SM00267 diguanylate cyclase AL549_RS16825 SM00382 ATPases associated with a variety of cellular activities AL549_RS16830 SM00849 Metallo-beta-lactamase superfamily AL549_RS16845 SM00382 ATPases associated with a variety of cellular activities AL549_RS16860 SM00487 DEAD-like helicases superfamily AL549_RS16860 SM00490 helicase superfamily c-terminal domain AL549_RS16860 SM00982 AL549_RS16860 AL549_RS16860 SM01058 CarD-like/TRCF domain AL549_RS16910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS16910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS16930 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS16935 SM00267 diguanylate cyclase AL549_RS16950 SM00862 Transcriptional regulatory protein, C terminal AL549_RS16960 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS16960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS16970 SM00267 diguanylate cyclase AL549_RS17080 SM00098 Alkaline phosphatase homologues AL549_RS17115 SM00448 cheY-homologous receiver domain AL549_RS17115 SM00862 Transcriptional regulatory protein, C terminal AL549_RS17120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS17120 SM00387 Histidine kinase-like ATPases AL549_RS17120 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS17135 SM00493 AL549_RS17135 AL549_RS17145 SM00382 ATPases associated with a variety of cellular activities AL549_RS17165 SM00448 cheY-homologous receiver domain AL549_RS17210 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL549_RS17220 SM00825 Beta-ketoacyl synthase AL549_RS17255 SM00463 Small MutS-related domain AL549_RS17260 SM00855 Phosphoglycerate mutase family AL549_RS17350 SM00382 ATPases associated with a variety of cellular activities AL549_RS17360 SM00260 Two component signalling adaptor domain AL549_RS17365 SM00260 Two component signalling adaptor domain AL549_RS17375 SM00448 cheY-homologous receiver domain AL549_RS17380 SM00073 Histidine Phosphotransfer domain AL549_RS17380 SM00260 Two component signalling adaptor domain AL549_RS17380 SM00387 Histidine kinase-like ATPases AL549_RS17380 SM01231 AL549_RS17380 AL549_RS17390 SM00448 cheY-homologous receiver domain AL549_RS17405 SM00382 ATPases associated with a variety of cellular activities AL549_RS17405 SM00962 SRP54-type protein, GTPase domain AL549_RS17465 SM00382 ATPases associated with a variety of cellular activities AL549_RS17490 SM00382 ATPases associated with a variety of cellular activities AL549_RS17490 SM00448 cheY-homologous receiver domain AL549_RS17495 SM00387 Histidine kinase-like ATPases AL549_RS17495 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS17500 SM00382 ATPases associated with a variety of cellular activities AL549_RS17595 SM01130 AL549_RS17595 AL549_RS17620 SM00028 Tetratricopeptide repeats AL549_RS17710 SM00479 AL549_RS17710 AL549_RS17725 SM00849 Metallo-beta-lactamase superfamily AL549_RS17730 SM00257 Lysin motif AL549_RS17745 SM00938 Nitrogen regulatory protein P-II AL549_RS17755 SM00977 TilS substrate C-terminal domain AL549_RS17765 SM00481 DNA polymerase alpha chain like domain AL549_RS17795 SM00935 Outer membrane protein (OmpH-like) AL549_RS17850 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS17910 SM00849 Metallo-beta-lactamase superfamily AL549_RS17970 SM00495 Chitin-binding domain type 3 AL549_RS17970 SM00636 AL549_RS17970 AL549_RS17980 SM00487 DEAD-like helicases superfamily AL549_RS17980 SM00490 helicase superfamily c-terminal domain AL549_RS17990 SM00267 diguanylate cyclase AL549_RS17990 SM00448 cheY-homologous receiver domain AL549_RS18020 SM00900 AL549_RS18020 AL549_RS18105 SM00925 MltA specific insert domain AL549_RS18175 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_RS18175 SM01134 AL549_RS18175 AL549_RS18220 SM00354 helix_turn _helix lactose operon repressor AL549_RS18225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS18225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS18225 SM01049 AL549_RS18225 AL549_RS18250 SM00354 helix_turn _helix lactose operon repressor AL549_RS18260 SM01038 Beta galactosidase small chain AL549_RS18300 SM00028 Tetratricopeptide repeats AL549_RS18350 SM00858 AL549_RS18350 AL549_RS18375 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS18395 SM00838 Elongation factor G C-terminus AL549_RS18395 SM00889 Elongation factor G, domain IV AL549_RS18410 SM00267 diguanylate cyclase AL549_RS18415 SM00382 ATPases associated with a variety of cellular activities AL549_RS18445 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AL549_RS18450 SM01133 AL549_RS18450 AL549_RS18470 SM00267 diguanylate cyclase AL549_RS18475 SM00052 Putative diguanylate phosphodiesterase AL549_RS18475 SM00267 diguanylate cyclase AL549_RS18500 SM00052 Putative diguanylate phosphodiesterase AL549_RS18500 SM00091 PAS domain AL549_RS18500 SM00267 diguanylate cyclase AL549_RS18520 SM00347 helix_turn_helix multiple antibiotic resistance protein AL549_RS18525 SM00028 Tetratricopeptide repeats AL549_RS18530 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_RS18530 SM00322 K homology RNA-binding domain AL549_RS18555 SM01387 AL549_RS18555 AL549_RS18575 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_RS18610 SM00382 ATPases associated with a variety of cellular activities AL549_RS18620 SM01103 AL549_RS18620 AL549_RS18690 SM00091 PAS domain AL549_RS18690 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS18690 SM00387 Histidine kinase-like ATPases AL549_RS18690 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS18690 SM00448 cheY-homologous receiver domain AL549_RS18710 SM00382 ATPases associated with a variety of cellular activities AL549_RS18715 SM00382 ATPases associated with a variety of cellular activities AL549_RS18735 SM01068 Putative carbohydrate binding domain AL549_RS18745 SM00382 ATPases associated with a variety of cellular activities AL549_RS18765 SM00938 Nitrogen regulatory protein P-II AL549_RS18805 SM00487 DEAD-like helicases superfamily AL549_RS18805 SM00490 helicase superfamily c-terminal domain AL549_RS18805 SM00847 Helicase associated domain (HA2) Add an annotation AL549_RS18850 SM00382 ATPases associated with a variety of cellular activities AL549_RS18860 SM00947 Carbonic anhydrase AL549_RS18890 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS18890 SM00895 AL549_RS18890 AL549_RS18895 SM00644 AL549_RS18895 AL549_RS18960 SM00382 ATPases associated with a variety of cellular activities AL549_RS18960 SM00962 SRP54-type protein, GTPase domain AL549_RS18960 SM00963 SRP54-type protein, helical bundle domain AL549_RS18970 SM01091 Transporter associated domain AL549_RS19000 SM00829 Enoylreductase AL549_RS19070 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AL549_RS19080 SM00382 ATPases associated with a variety of cellular activities AL549_RS19090 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AL549_RS19090 SM00534 ATPase domain of DNA mismatch repair MUTS family AL549_RS19100 SM00257 Lysin motif AL549_RS19135 SM01192 AL549_RS19135 AL549_RS19135 SM01193 AL549_RS19135 AL549_RS19150 SM00954 Region found in RelA / SpoT proteins AL549_RS19160 SM00073 Histidine Phosphotransfer domain AL549_RS19160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS19160 SM00387 Histidine kinase-like ATPases AL549_RS19160 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS19160 SM00448 cheY-homologous receiver domain AL549_RS19165 SM00267 diguanylate cyclase AL549_RS19200 SM00358 Double-stranded RNA binding motif AL549_RS19200 SM00535 Ribonuclease III family AL549_RS19210 SM00838 Elongation factor G C-terminus AL549_RS19335 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_RS19345 SM00861 Transketolase, pyrimidine binding domain AL549_RS19360 SM00731 SprT homologues. AL549_RS19390 SM00732 Likely ribonuclease with RNase H fold. AL549_RS19420 SM01152 AL549_RS19420 AL549_RS19435 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_RS19440 SM00478 endonuclease III AL549_RS19455 SM00478 endonuclease III AL549_RS19455 SM00525 AL549_RS19455 AL549_RS19485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS19485 SM01049 AL549_RS19485 AL549_RS19530 SM00849 Metallo-beta-lactamase superfamily AL549_RS19580 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS19590 SM00354 helix_turn _helix lactose operon repressor AL549_RS19620 SM00495 Chitin-binding domain type 3 AL549_RS19725 SM00487 DEAD-like helicases superfamily AL549_RS19725 SM00490 helicase superfamily c-terminal domain AL549_RS19730 SM00670 Large family of predicted nucleotide-binding domains AL549_RS19750 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_RS19820 SM00382 ATPases associated with a variety of cellular activities AL549_RS19825 SM00028 Tetratricopeptide repeats AL549_RS19835 SM00965 Secretin and TonB N terminus short domain AL549_RS19855 SM00052 Putative diguanylate phosphodiesterase AL549_RS19855 SM00267 diguanylate cyclase AL549_RS19865 SM00421 helix_turn_helix, Lux Regulon AL549_RS19900 SM01018 B12 binding domain AL549_RS19910 SM00091 PAS domain AL549_RS19910 SM00267 diguanylate cyclase AL549_RS19915 SM00897 FIST N domain AL549_RS19915 SM01204 AL549_RS19915 AL549_RS20035 SM01005 Alanine racemase, C-terminal domain AL549_RS20095 SM00965 Secretin and TonB N terminus short domain AL549_RS20150 SM00859 Semialdehyde dehydrogenase, NAD binding domain AL549_RS20190 SM00919 Malic enzyme, NAD binding domain AL549_RS20190 SM01274 AL549_RS20190 AL549_RS20200 SM00487 DEAD-like helicases superfamily AL549_RS20200 SM00490 helicase superfamily c-terminal domain AL549_RS20205 SM00354 helix_turn _helix lactose operon repressor AL549_RS20220 SM00382 ATPases associated with a variety of cellular activities AL549_RS20220 SM01086 C-terminal, D2-small domain, of ClpB protein AL549_RS20290 SM00838 Elongation factor G C-terminus AL549_RS20290 SM00889 Elongation factor G, domain IV AL549_RS20330 SM00320 WD40 repeats AL549_RS20365 SM00382 ATPases associated with a variety of cellular activities AL549_RS20390 SM00100 Cyclic nucleotide-monophosphate binding domain AL549_RS20390 SM00419 helix_turn_helix, cAMP Regulatory protein AL549_RS20395 SM01150 AL549_RS20395 AL549_RS20440 SM00967 RNA 2'-O ribose methyltransferase substrate binding AL549_RS20445 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_RS20445 SM00357 Cold shock protein domain AL549_RS20445 SM00955 AL549_RS20445 AL549_RS20465 SM00671 Sel1-like repeats. AL549_RS20470 SM00788 Adenylosuccinate synthetase AL549_RS20480 SM00244 prohibitin homologues AL549_RS20485 SM00244 prohibitin homologues AL549_RS20505 SM00853 MutL C terminal dimerisation domain AL549_RS20505 SM01340 AL549_RS20505 AL549_RS20510 SM00257 Lysin motif AL549_RS20510 SM00646 AL549_RS20510 AL549_RS20580 SM00479 AL549_RS20580 AL549_RS20615 SM00450 Rhodanese Homology Domain AL549_RS20630 SM00971 Serine acetyltransferase, N-terminal AL549_RS20685 SM00841 Elongation factor P, C-terminal AL549_RS20685 SM01185 AL549_RS20685 AL549_RS20710 SM00883 Chaperonin 10 Kd subunit AL549_RS20735 SM00448 cheY-homologous receiver domain AL549_RS20735 SM00862 Transcriptional regulatory protein, C terminal AL549_RS20740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS20740 SM00387 Histidine kinase-like ATPases AL549_RS20740 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS20810 SM00387 Histidine kinase-like ATPases AL549_RS20810 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS20810 SM00448 cheY-homologous receiver domain AL549_RS20820 SM00100 Cyclic nucleotide-monophosphate binding domain AL549_RS20825 SM00479 AL549_RS20825 AL549_RS20845 SM00878 Biotin carboxylase C-terminal domain AL549_RS20865 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS20865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS20865 SM01049 AL549_RS20865 AL549_RS20870 SM00422 helix_turn_helix, mercury resistance AL549_RS20880 SM00798 AICARFT/IMPCHase bienzyme AL549_RS20880 SM00851 MGS-like domain AL549_RS20885 SM01209 AL549_RS20885 AL549_RS20885 SM01210 AL549_RS20885 AL549_RS20895 SM00411 bacterial (prokaryotic) histone like domain AL549_RS20915 SM00986 Uracil DNA glycosylase superfamily AL549_RS20915 SM00987 UreE urease accessory protein, C-terminal domain AL549_RS20945 SM00663 RNA polymerase I subunit A N-terminus AL549_RS20970 SM00649 Ribosomal protein L11/L12 AL549_RS20975 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AL549_RS20975 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL549_RS21030 SM00155 Phospholipase D. Active site motifs. AL549_RS21090 SM00360 RNA recognition motif AL549_RS21145 SM00563 Phosphate acyltransferases AL549_RS21175 SM00450 Rhodanese Homology Domain AL549_RS21190 SM00382 ATPases associated with a variety of cellular activities AL549_RS21195 SM00382 ATPases associated with a variety of cellular activities AL549_RS21195 SM00962 SRP54-type protein, GTPase domain AL549_RS21195 SM00963 SRP54-type protein, helical bundle domain AL549_RS21250 SM00404 Protein tyrosine phosphatase, catalytic domain motif AL549_RS21255 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL549_RS21260 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AL549_RS21265 SM00052 Putative diguanylate phosphodiesterase AL549_RS21295 SM01144 AL549_RS21295 AL549_RS21300 SM00052 Putative diguanylate phosphodiesterase AL549_RS21300 SM00267 diguanylate cyclase AL549_RS21300 SM00897 FIST N domain AL549_RS21300 SM01204 AL549_RS21300 AL549_RS21335 SM01219 AL549_RS21335 AL549_RS21360 SM00028 Tetratricopeptide repeats AL549_RS21400 SM00052 Putative diguanylate phosphodiesterase AL549_RS21400 SM00091 PAS domain AL549_RS21400 SM00267 diguanylate cyclase AL549_RS21405 SM00344 helix_turn_helix ASNC type AL549_RS21460 SM00354 helix_turn _helix lactose operon repressor AL549_RS21465 SM00448 cheY-homologous receiver domain AL549_RS21475 SM00220 Serine/Threonine protein kinases, catalytic domain AL549_RS21525 SM00382 ATPases associated with a variety of cellular activities AL549_RS21655 SM00829 Enoylreductase AL549_RS21705 SM00052 Putative diguanylate phosphodiesterase AL549_RS21705 SM00267 diguanylate cyclase AL549_RS21705 SM01079 AL549_RS21705 AL549_RS21715 SM00387 Histidine kinase-like ATPases AL549_RS21715 SM00433 TopoisomeraseII AL549_RS21725 SM00480 DNA polymerase III beta subunit AL549_RS21730 SM00382 ATPases associated with a variety of cellular activities AL549_RS21730 SM00760 Bacterial dnaA protein helix-turn-helix domain AL549_RS21735 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS21745 SM00382 ATPases associated with a variety of cellular activities AL549_RS21760 SM01234 AL549_RS21760 AL549_RS21785 SM01228 AL549_RS21785 AL549_RS21800 SM00470 ParB-like nuclease domain AL549_RS21840 SM00382 ATPases associated with a variety of cellular activities AL549_RS21860 SM00062 Bacterial periplasmic substrate-binding proteins AL549_RS21900 SM00382 ATPases associated with a variety of cellular activities AL549_RS21910 SM00563 Phosphate acyltransferases AL549_RS21970 SM00257 Lysin motif AL549_RS21995 SM01001 AIR carboxylase AL549_RS22100 SM00876 Biotin and Thiamin Synthesis associated domain AL549_RS22160 SM00342 helix_turn_helix, arabinose operon control protein AL549_RS22170 SM00341 Helicase and RNase D C-terminal AL549_RS22170 SM00487 DEAD-like helicases superfamily AL549_RS22170 SM00490 helicase superfamily c-terminal domain AL549_RS22170 SM00956 AL549_RS22170 AL549_RS22195 SM00487 DEAD-like helicases superfamily AL549_RS22195 SM00490 helicase superfamily c-terminal domain AL549_RS22205 SM00357 Cold shock protein domain AL549_RS22205 SM00382 ATPases associated with a variety of cellular activities AL549_RS22205 SM00959 Rho termination factor, N-terminal domain AL549_RS22355 SM01004 Delta-aminolevulinic acid dehydratase AL549_RS22360 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AL549_RS22360 SM00474 3'-5' exonuclease AL549_RS22360 SM00475 5'-3' exonuclease AL549_RS22360 SM00482 DNA polymerase A domain AL549_RS22390 SM00729 Elongator protein 3, MiaB family, Radical SAM AL549_RS22395 SM00052 Putative diguanylate phosphodiesterase AL549_RS22395 SM00267 diguanylate cyclase AL549_RS22395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS22400 SM00382 ATPases associated with a variety of cellular activities AL549_RS22400 SM00448 cheY-homologous receiver domain AL549_RS22405 SM00091 PAS domain AL549_RS22405 SM00387 Histidine kinase-like ATPases AL549_RS22405 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS22415 SM01230 AL549_RS22415 AL549_RS22470 SM00363 S4 RNA-binding domain AL549_RS22485 SM00382 ATPases associated with a variety of cellular activities AL549_RS22565 SM00316 Ribosomal protein S1-like RNA-binding domain AL549_RS22565 SM00732 Likely ribonuclease with RNase H fold. AL549_RS22575 SM00448 cheY-homologous receiver domain AL549_RS22575 SM00862 Transcriptional regulatory protein, C terminal AL549_RS22580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS22580 SM00387 Histidine kinase-like ATPases AL549_RS22580 SM00388 His Kinase A (phosphoacceptor) domain AL549_RS22590 SM00487 DEAD-like helicases superfamily AL549_RS22590 SM00490 helicase superfamily c-terminal domain AL549_RS22600 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AL549_RS22600 SM00954 Region found in RelA / SpoT proteins AL549_RS22605 SM01409 AL549_RS22605 AL549_RS22610 SM00072 Guanylate kinase homologues. AL549_RS22615 SM00028 Tetratricopeptide repeats AL549_RS22665 SM00382 ATPases associated with a variety of cellular activities AL549_RS22670 SM00382 ATPases associated with a variety of cellular activities AL549_RS22730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AL549_RS22730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AL549_RS22730 SM01049 AL549_RS22730 AL549_RS22755 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AL549_RS22755 SM01232 AL549_RS22755 AL549_RS22830 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS22970 SM00226 Low molecular weight phosphatase family AL549_RS23010 SM01321 AL549_RS23010 AL549_RS23055 SM00984 UDP binding domain AL549_RS23075 SM00849 Metallo-beta-lactamase superfamily AL549_RS23075 SM01027 Beta-Casp domain AL549_RS23105 SM01403 AL549_RS23105 AL549_RS23125 SM01382 AL549_RS23125 AL549_RS23125 SM01383 AL549_RS23125 AL549_RS23140 SM00322 K homology RNA-binding domain AL549_RS23160 SM01374 AL549_RS23160 AL549_RS23165 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AL549_RS23230 SM00363 S4 RNA-binding domain AL549_RS23230 SM01390 AL549_RS23230 AL549_RS23235 SM00662 RNA polymerases D AL549_RS23320 SM00382 ATPases associated with a variety of cellular activities AL549_RS23400 SM00382 ATPases associated with a variety of cellular activities AL549_RS23415 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS23415 SM00924 MgtE intracellular N domain AL549_RS23445 SM00382 ATPases associated with a variety of cellular activities AL549_RS23465 SM00116 Domain in cystathionine beta-synthase and other proteins. AL549_RS23475 SM00382 ATPases associated with a variety of cellular activities AL549_RS23510 SM00563 Phosphate acyltransferases AL549_RS23585 SM00650 Ribosomal RNA adenine dimethylases AL549_RS23605 SM00271 DnaJ molecular chaperone homology domain AL549_RS23625 SM01329 AL549_RS23625 AL549_RS23630 SM00917 LeuA allosteric (dimerisation) domain AL549_RS23640 SM00014 Acid phosphatase homologues AL549_RS23670 SM00091 PAS domain AL549_RS23670 SM00267 diguanylate cyclase AL549_RS23675 SM00345 helix_turn_helix gluconate operon transcriptional repressor AL549_RS23675 SM00895 AL549_RS23675 AL549_RS23685 SM00420 helix_turn_helix, Deoxyribose operon repressor AL549_RS23685 SM01134 AL549_RS23685 AL549_RS23715 SM00563 Phosphate acyltransferases AL549_RS23735 SM00400 zinc finger AL549_RS23735 SM00493 AL549_RS23735 AL549_RS23735 SM00766 DNA primase DnaG DnaB-binding AL549_RS23760 SM01207 AL549_RS23760 AL549_RS23765 SM00905 Dihydroneopterin aldolase AL549_RS23785 SM00382 ATPases associated with a variety of cellular activities AL549_RS23790 SM00287 Bacterial SH3 domain homologues