locus-tag	class	description
BJD94_RS00010	COG2166	iron-sulfur cluster assembly
BJD94_RS00030	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BJD94_RS00045	COG1595	DNA-templated transcription, initiation
BJD94_RS00055	COG2211	Major facilitator Superfamily
BJD94_RS00070	COG2813	Specifically methylates the guanine in position
BJD94_RS00075	COG0271	Belongs to the BolA IbaG family
BJD94_RS00080	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
BJD94_RS00085	COG1805	sodium ion transport
BJD94_RS00090	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
BJD94_RS00100	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
BJD94_RS00105	COG2871	sodium ion transport
BJD94_RS00110	COG1477	protein flavinylation
BJD94_RS00125	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
BJD94_RS00130	COG0514	ATP-dependent DNA helicase (RecQ)
BJD94_RS00145	COG0733	neurotransmitter:sodium symporter activity
BJD94_RS00170	COG1720	tRNA m6t6A37 methyltransferase activity
BJD94_RS00175	COG0254	rRNA binding
BJD94_RS00185	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
BJD94_RS00190	COG1671	Belongs to the UPF0178 family
BJD94_RS00220	COG3098	single-species biofilm formation
BJD94_RS00235	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
BJD94_RS00240	COG0024	Methionine aminopeptidase
BJD94_RS00245	COG0052	Belongs to the universal ribosomal protein uS2 family
BJD94_RS00250	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
BJD94_RS00255	COG0528	UMP kinase activity
BJD94_RS00260	COG0233	cytoplasmic translational termination
BJD94_RS00265	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
BJD94_RS00270	COG0575	Belongs to the CDS family
BJD94_RS00280	COG0750	zinc metalloprotease
BJD94_RS00285	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD94_RS00290	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
BJD94_RS00300	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD94_RS00305	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD94_RS00310	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD94_RS00315	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
BJD94_RS00320	COG0587	DNA-directed DNA polymerase activity
BJD94_RS00325	COG0825	malonyl-CoA metabolic process
BJD94_RS00340	COG0347	Belongs to the P(II) protein family
BJD94_RS00345	COG3021	interspecies interaction between organisms
BJD94_RS00355	COG0741	lytic transglycosylase activity
BJD94_RS00355	COG1388	LysM domain
BJD94_RS00360	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD94_RS00365	COG2226	methyltransferase
BJD94_RS00370	COG0328	RNA-DNA hybrid ribonuclease activity
BJD94_RS00385	COG2249	NAD(P)H dehydrogenase (quinone) activity
BJD94_RS00410	COG1960	acyl-CoA dehydrogenase activity
BJD94_RS00420	COG0121	glutamine amidotransferase
BJD94_RS00425	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
BJD94_RS00430	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
BJD94_RS00435	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
BJD94_RS00440	COG2233	PERMEase
BJD94_RS00460	COG1393	Belongs to the ArsC family
BJD94_RS00465	COG4783	chaperone-mediated protein folding
BJD94_RS00480	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
BJD94_RS00485	COG2716	regulation of RNA biosynthetic process
BJD94_RS00490	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
BJD94_RS00495	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
BJD94_RS00515	COG1393	Belongs to the ArsC family
BJD94_RS00540	COG2837	iron assimilation
BJD94_RS00545	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_RS00550	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_RS00555	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_RS00560	COG1334	flagellar protein FlaG
BJD94_RS00565	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
BJD94_RS00575	COG1516	flagellar protein fliS
BJD94_RS00595	COG1677	Flagellar hook-basal body complex protein FliE
BJD94_RS00605	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
BJD94_RS00655	COG1987	bacterial-type flagellum assembly
BJD94_RS00660	COG1684	flagellar biosynthetic protein fliR
BJD94_RS00695	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
BJD94_RS00700	COG2198	Histidine kinase
BJD94_RS00700	COG0643	Histidine kinase
BJD94_RS00700	COG0784	Response regulator, receiver
BJD94_RS00710	COG1192	Involved in chromosome partitioning
BJD94_RS00720	COG0835	chemotaxis
BJD94_RS00730	COG4133	protoheme IX ABC transporter activity
BJD94_RS00735	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD94_RS00740	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD94_RS00745	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
BJD94_RS00750	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
BJD94_RS00755	COG1138	Cytochrome C-type biogenesis protein
BJD94_RS00760	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD94_RS00765	COG3088	subunit of a heme lyase
BJD94_RS00765	COG4235	cytochrome complex assembly
BJD94_RS00775	COG2853	Lipoprotein
BJD94_RS00780	COG2067	long-chain fatty acid transport protein
BJD94_RS00785	COG2067	long-chain fatty acid transport protein
BJD94_RS00810	COG1025	Belongs to the peptidase M16 family
BJD94_RS00820	COG2062	phosphohistidine phosphatase, SixA
BJD94_RS00825	COG2840	Smr protein MutS2
BJD94_RS00830	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD94_RS00840	COG2860	membrane
BJD94_RS00845	COG3101	peptidyl-lysine hydroxylation
BJD94_RS00860	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BJD94_RS00870	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BJD94_RS00885	COG0101	tRNA pseudouridine synthase activity
BJD94_RS00890	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
BJD94_RS00895	COG0285	dihydrofolate synthase activity
BJD94_RS00900	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
BJD94_RS00905	COG1286	toxin biosynthetic process
BJD94_RS00910	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
BJD94_RS00915	COG0583	DNA-binding transcription factor activity
BJD94_RS00920	COG0745	RESPONSE REGULATOR receiver
BJD94_RS00930	COG2832	Protein of unknown function (DUF454)
BJD94_RS00935	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
BJD94_RS00945	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
BJD94_RS00950	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
BJD94_RS00965	COG2205	protein histidine kinase activity
BJD94_RS00970	COG0745	RESPONSE REGULATOR receiver
BJD94_RS00985	COG2983	Belongs to the UPF0260 family
BJD94_RS00995	COG0346	lactoylglutathione lyase activity
BJD94_RS01005	COG1785	Belongs to the alkaline phosphatase family
BJD94_RS01020	COG2226	methyltransferase
BJD94_RS01025	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
BJD94_RS01035	COG2239	Acts as a magnesium transporter
BJD94_RS01040	COG2199	diguanylate cyclase activity
BJD94_RS01040	COG2203	Gaf domain
BJD94_RS01055	COG3710	Transcriptional regulator
BJD94_RS01060	COG0531	amino acid
BJD94_RS01065	COG1982	Orn Lys Arg decarboxylase major
BJD94_RS01070	COG3706	GGDEF domain
BJD94_RS01075	COG0517	IMP dehydrogenase activity
BJD94_RS01075	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
BJD94_RS01075	COG0617	tRNA 3'-terminal CCA addition
BJD94_RS01100	COG0537	adenosine 5'-monophosphoramidase activity
BJD94_RS01130	COG1252	NADH dehydrogenase
BJD94_RS01145	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
BJD94_RS01155	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD94_RS01160	COG1136	(ABC) transporter
BJD94_RS01165	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD94_RS01175	COG0658	competence protein
BJD94_RS01175	COG2333	competence protein COMEC
BJD94_RS01185	COG1663	tetraacyldisaccharide 4'-kinase activity
BJD94_RS01190	COG2835	tetraacyldisaccharide 4'-kinase activity
BJD94_RS01195	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
BJD94_RS01200	COG2199	diguanylate cyclase activity
BJD94_RS01205	COG2719	SpoVR family
BJD94_RS01210	COG2718	Belongs to the UPF0229 family
BJD94_RS01215	COG2766	serine protein kinase
BJD94_RS01220	COG3013	Belongs to the UPF0304 family
BJD94_RS01230	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BJD94_RS01245	COG1882	Formate acetyltransferase
BJD94_RS01285	COG0708	Exodeoxyribonuclease III
BJD94_RS01290	COG0840	transmembrane signaling receptor activity
BJD94_RS01300	COG3923	Primosomal replication protein n
BJD94_RS01310	COG1199	ATP-dependent helicase activity
BJD94_RS01330	COG1278	Cold shock
BJD94_RS01335	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
BJD94_RS01340	COG0542	response to heat
BJD94_RS01345	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
BJD94_RS01350	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
BJD94_RS01365	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
BJD94_RS01375	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD94_RS01385	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
BJD94_RS01410	COG3070	regulator of competence-specific genes
BJD94_RS01415	COG1609	Transcriptional regulator
BJD94_RS01425	COG0745	RESPONSE REGULATOR receiver
BJD94_RS01430	COG1434	Gram-negative-bacterium-type cell wall biogenesis
BJD94_RS01435	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BJD94_RS01440	COG3006	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Not required for mini-F plasmid partitioning. Probably acts via its interaction with MukB and MukE. Overexpression results in anucleate cells. It has a calcium binding activity
BJD94_RS01445	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
BJD94_RS01450	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
BJD94_RS01480	COG0189	ligase activity
BJD94_RS01480	COG4067	protein conserved in archaea
BJD94_RS01485	COG0500	methyltransferase
BJD94_RS01495	COG4106	trans-aconitate 2-methyltransferase activity
BJD94_RS01515	COG0632	four-way junction helicase activity
BJD94_RS01520	COG2255	four-way junction helicase activity
BJD94_RS01525	COG1271	oxidase subunit
BJD94_RS01530	COG1294	oxidase, subunit
BJD94_RS01535	COG4890	Cyd operon protein YbgT
BJD94_RS01545	COG0824	Thioesterase
BJD94_RS01550	COG0811	peptide transport
BJD94_RS01565	COG0823	Involved in the tonB-independent uptake of proteins
BJD94_RS01570	COG2885	chlorophyll binding
BJD94_RS01575	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
BJD94_RS01580	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
BJD94_RS01590	COG3766	membrane
BJD94_RS01600	COG0754	glutathionylspermidine amidase activity
BJD94_RS01610	COG2205	protein histidine kinase activity
BJD94_RS01610	COG0784	Response regulator, receiver
BJD94_RS01685	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
BJD94_RS01690	COG4804	nuclease activity
BJD94_RS01695	COG0732	type I restriction modification DNA specificity domain
BJD94_RS01705	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
BJD94_RS01725	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
BJD94_RS01740	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD94_RS01745	COG0840	transmembrane signaling receptor activity
BJD94_RS01750	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BJD94_RS01755	COG0861	Integral membrane protein TerC family
BJD94_RS01775	COG2207	Transcriptional regulator
BJD94_RS01795	COG1032	radical SAM domain protein
BJD94_RS01820	COG0583	DNA-binding transcription factor activity
BJD94_RS01825	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
BJD94_RS01830	COG0280	phosphate acetyltransferase
BJD94_RS01830	COG0857	belongs to the CobB CobQ family
BJD94_RS01835	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BJD94_RS01840	COG3092	negative regulation of chromosome organization
BJD94_RS01850	COG4120	Belongs to the binding-protein-dependent transport system permease family
BJD94_RS01860	COG0366	Alpha amylase catalytic
BJD94_RS01875	COG0653	protein targeting
BJD94_RS01885	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
BJD94_RS01890	COG2186	Transcriptional regulator
BJD94_RS01920	COG2989	Protein conserved in bacteria
BJD94_RS01925	COG3108	Peptidase M15
BJD94_RS01930	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
BJD94_RS01945	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
BJD94_RS01970	COG1846	Transcriptional regulator
BJD94_RS01975	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
BJD94_RS01980	COG0840	transmembrane signaling receptor activity
BJD94_RS02000	COG1448	Aminotransferase
BJD94_RS02005	COG3437	response regulator, receiver
BJD94_RS02005	COG2770	Histidine kinase
BJD94_RS02020	COG0017	Asparaginyl-tRNA synthetase
BJD94_RS02025	COG0840	transmembrane signaling receptor activity
BJD94_RS02030	COG0720	synthase
BJD94_RS02040	COG2200	EAL domain
BJD94_RS02045	COG1760	l-serine dehydratase
BJD94_RS02050	COG0814	amino acid
BJD94_RS02055	COG0494	nUDIX hydrolase
BJD94_RS02065	COG2205	protein histidine kinase activity
BJD94_RS02065	COG0784	Response regulator, receiver
BJD94_RS02085	COG3106	COG3106 Predicted ATPase
BJD94_RS02090	COG3768	UPF0283 membrane protein
BJD94_RS02095	COG3283	Transcriptional regulator of aromatic amino acids metabolism
BJD94_RS02100	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BJD94_RS02115	COG0471	metal ion transport
BJD94_RS02120	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BJD94_RS02120	COG4191	Histidine kinase
BJD94_RS02135	COG2199	diguanylate cyclase activity
BJD94_RS02135	COG2200	EAL domain
BJD94_RS02150	COG5001	Diguanylate cyclase
BJD94_RS02150	COG3300	MHYT domain
BJD94_RS02155	COG1328	CTP reductase activity
BJD94_RS02160	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
BJD94_RS02165	COG0583	DNA-binding transcription factor activity
BJD94_RS02180	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
BJD94_RS02190	COG4667	esterase of the alpha-beta hydrolase superfamily
BJD94_RS02200	COG1597	lipid kinase activity
BJD94_RS02205	COG0814	amino acid
BJD94_RS02220	COG0783	Belongs to the Dps family
BJD94_RS02235	COG1132	(ABC) transporter
BJD94_RS02240	COG1132	(ABC) transporter
BJD94_RS02245	COG1115	amino acid carrier protein
BJD94_RS02250	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BJD94_RS02260	COG1596	polysaccharide export
BJD94_RS02285	COG0438	transferase activity, transferring glycosyl groups
BJD94_RS02290	COG0438	transferase activity, transferring glycosyl groups
BJD94_RS02290	COG0297	glycogen (starch) synthase activity
BJD94_RS02305	COG2165	general secretion pathway protein
BJD94_RS02330	COG0443	Heat shock 70 kDa protein
BJD94_RS02335	COG0443	Heat shock 70 kDa protein
BJD94_RS02345	COG3706	GGDEF domain
BJD94_RS02365	COG3713	MltA-interacting MipA family protein
BJD94_RS02395	COG4964	Belongs to the GSP D family
BJD94_RS02405	COG2894	cell division
BJD94_RS02445	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
BJD94_RS02460	COG1643	Atp-dependent helicase
BJD94_RS02485	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
BJD94_RS02490	COG5380	lipid catabolic process
BJD94_RS02495	COG2814	Major facilitator Superfamily
BJD94_RS02500	COG0010	Belongs to the arginase family
BJD94_RS02505	COG1166	arginine decarboxylase activity
BJD94_RS02570	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
BJD94_RS02575	COG0072	phenylalanine-tRNA ligase activity
BJD94_RS02575	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD94_RS02595	COG0776	regulation of translation
BJD94_RS02605	COG0500	methyltransferase
BJD94_RS02610	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
BJD94_RS02615	COG0295	cytidine deaminase activity
BJD94_RS02630	COG2885	chlorophyll binding
BJD94_RS02645	COG0247	lactate metabolic process
BJD94_RS02645	COG0277	FAD linked oxidase domain protein
BJD94_RS02650	COG2020	methyltransferase activity
BJD94_RS02655	COG5640	endopeptidase activity
BJD94_RS02665	COG2986	histidine ammonia-lyase
BJD94_RS02670	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
BJD94_RS02680	COG1228	amidohydrolase
BJD94_RS02690	COG4326	sporulation control protein
BJD94_RS02710	COG0291	Belongs to the bacterial ribosomal protein bL35 family
BJD94_RS02840	COG4628	conserved protein (DUF2132)
BJD94_RS03000	COG0346	lactoylglutathione lyase activity
BJD94_RS03240	COG0346	lactoylglutathione lyase activity
BJD94_RS03470	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
BJD94_RS03475	COG2944	sequence-specific DNA binding
BJD94_RS03535	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
BJD94_RS03535	COG0456	acetyltransferase
BJD94_RS03615	COG0384	phenazine biosynthesis protein PhzF
BJD94_RS03840	COG2161	toxin-antitoxin pair type II binding
BJD94_RS03845	COG4115	mRNA cleavage
BJD94_RS03925	COG0346	lactoylglutathione lyase activity
BJD94_RS04075	COG4628	conserved protein (DUF2132)
BJD94_RS04310	COG4628	conserved protein (DUF2132)
BJD94_RS04505	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_RS04600	COG2226	methyltransferase
BJD94_RS04835	COG0534	Mate efflux family protein
BJD94_RS04840	COG0307	riboflavin synthase, alpha
BJD94_RS04860	COG3706	GGDEF domain
BJD94_RS04870	COG0791	NLP P60 protein
BJD94_RS04875	COG0840	transmembrane signaling receptor activity
BJD94_RS04885	COG3148	PFAM DTW domain containing protein
BJD94_RS04890	COG1940	carbohydrate kinase activity
BJD94_RS04905	COG0746	molybdenum cofactor guanylyltransferase activity
BJD94_RS04910	COG3842	ATPase activity
BJD94_RS04915	COG4662	Binding-protein-dependent transport system inner membrane component
BJD94_RS04925	COG2204	response regulator
BJD94_RS04930	COG3852	Histidine kinase
BJD94_RS04945	COG0488	(ABC) transporter
BJD94_RS04955	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
BJD94_RS04985	COG0243	molybdopterin cofactor binding
BJD94_RS04985	COG3383	formate dehydrogenase (NAD+) activity
BJD94_RS04990	COG0437	4 iron, 4 sulfur cluster binding
BJD94_RS05020	COG0004	ammonium transporteR
BJD94_RS05025	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
BJD94_RS05030	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BJD94_RS05040	COG1177	transmembrane transport
BJD94_RS05045	COG1176	ABC-type spermidine putrescine transport system, permease component I
BJD94_RS05050	COG3842	ATPase activity
BJD94_RS05060	COG2992	FlgJ-related protein
BJD94_RS05075	COG0589	response to stress
BJD94_RS05080	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD94_RS05095	COG2217	Heavy metal translocating P-type atpase
BJD94_RS05105	COG2010	Cytochrome c
BJD94_RS05120	COG3278	Belongs to the heme-copper respiratory oxidase family
BJD94_RS05135	COG2205	protein histidine kinase activity
BJD94_RS05135	COG0784	Response regulator, receiver
BJD94_RS05155	COG3120	sequence-specific DNA binding
BJD94_RS05160	COG1067	ATP-dependent peptidase activity
BJD94_RS05165	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
BJD94_RS05180	COG0488	(ABC) transporter
BJD94_RS05190	COG0116	Belongs to the methyltransferase superfamily
BJD94_RS05190	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD94_RS05205	COG2902	Dehydrogenase
BJD94_RS05215	COG0308	aminopeptidase N
BJD94_RS05230	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
BJD94_RS05235	COG1956	GAF domain-containing protein
BJD94_RS05240	COG1132	(ABC) transporter
BJD94_RS05245	COG2995	paraquat-inducible protein a
BJD94_RS05250	COG3008	intermembrane lipid transfer
BJD94_RS05255	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
BJD94_RS05255	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BJD94_RS05260	COG2996	Protein conserved in bacteria
BJD94_RS05275	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD94_RS05285	COG3706	GGDEF domain
BJD94_RS05290	COG1793	dna ligase
BJD94_RS05295	COG1366	Belongs to the anti-sigma-factor antagonist family
BJD94_RS05325	COG2204	response regulator
BJD94_RS05370	COG0438	transferase activity, transferring glycosyl groups
BJD94_RS05380	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BJD94_RS05415	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
BJD94_RS05420	COG0363	glucosamine-6-phosphate deaminase activity
BJD94_RS05425	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
BJD94_RS05430	COG4565	transcriptional regulatory protein
BJD94_RS05435	COG3290	protein histidine kinase activity
BJD94_RS05450	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD94_RS05475	COG1115	amino acid carrier protein
BJD94_RS05490	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
BJD94_RS05495	COG0204	Acyl-transferase
BJD94_RS05500	COG0348	domain, Protein
BJD94_RS05505	COG0437	4 iron, 4 sulfur cluster binding
BJD94_RS05515	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BJD94_RS05520	COG4597	amino acid ABC transporter
BJD94_RS05525	COG0765	amino acid transport
BJD94_RS05530	COG1126	abc transporter atp-binding protein
BJD94_RS05535	COG0670	Belongs to the BI1 family
BJD94_RS05545	COG2920	part of a sulfur-relay system
BJD94_RS05560	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
BJD94_RS05590	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
BJD94_RS05595	COG0602	queuosine metabolic process
BJD94_RS05600	COG0561	phosphatase activity
BJD94_RS05630	COG2828	Protein conserved in bacteria
BJD94_RS05635	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
BJD94_RS05640	COG0372	Belongs to the citrate synthase family
BJD94_RS05645	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
BJD94_RS05690	COG2197	response regulator
BJD94_RS05700	COG0730	response to heat
BJD94_RS05715	COG1653	transport
BJD94_RS05720	COG1175	transmembrane transport
BJD94_RS05725	COG0395	ABC-type sugar transport system, permease component
BJD94_RS05730	COG3842	ATPase activity
BJD94_RS05735	COG1349	DNA-binding transcription factor activity
BJD94_RS05740	COG0584	glycerophosphoryl diester phosphodiesterase
BJD94_RS05745	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
BJD94_RS05755	COG1278	Cold shock
BJD94_RS05795	COG0625	glutathione transferase activity
BJD94_RS05805	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
BJD94_RS05815	COG2195	Cleaves the N-terminal amino acid of tripeptides
BJD94_RS05820	COG0737	Belongs to the 5'-nucleotidase family
BJD94_RS05825	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
BJD94_RS05830	COG3063	Type IV pilus biogenesis stability protein PilW
BJD94_RS05845	COG1451	nucleotide metabolic process
BJD94_RS05855	COG0583	DNA-binding transcription factor activity
BJD94_RS05875	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
BJD94_RS05905	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
BJD94_RS05925	COG2925	Exonuclease
BJD94_RS05930	COG1380	Effector of murein hydrolase LrgA
BJD94_RS05935	COG1346	cytolysis
BJD94_RS05945	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
BJD94_RS05960	COG1643	Atp-dependent helicase
BJD94_RS05965	COG0281	malic enzyme
BJD94_RS05970	COG2949	membrane
BJD94_RS05975	COG0471	metal ion transport
BJD94_RS06000	COG0492	ferredoxin-NADP+ reductase activity
BJD94_RS06005	COG4988	ABC transporter
BJD94_RS06010	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
BJD94_RS06025	COG5002	protein histidine kinase activity
BJD94_RS06025	COG5002	protein histidine kinase activity
BJD94_RS06040	COG3070	regulator of competence-specific genes
BJD94_RS06050	COG2431	L-lysine efflux transmembrane transporter activity
BJD94_RS06060	COG0076	glutamate decarboxylase activity
BJD94_RS06065	COG1737	Transcriptional regulator
BJD94_RS06070	COG1979	alcohol dehydrogenase
BJD94_RS06075	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BJD94_RS06080	COG2985	domain, Protein
BJD94_RS06080	COG3273	potassium ion transport
BJD94_RS06085	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BJD94_RS06100	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
BJD94_RS06115	COG1136	(ABC) transporter
BJD94_RS06120	COG0702	epimerase
BJD94_RS06130	COG2814	Major facilitator Superfamily
BJD94_RS06140	COG1061	Type III restriction enzyme res subunit
BJD94_RS06155	COG2205	protein histidine kinase activity
BJD94_RS06160	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
BJD94_RS06190	COG3313	Fe-S protein
BJD94_RS06200	COG4134	Bacterial extracellular solute-binding protein
BJD94_RS06205	COG4135	transport system, permease component
BJD94_RS06210	COG4136	ATPase activity
BJD94_RS06215	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
BJD94_RS06220	COG3604	Transcriptional regulator
BJD94_RS06225	COG1151	hydroxylamine reductase activity
BJD94_RS06230	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BJD94_RS06240	COG0564	pseudouridine synthase activity
BJD94_RS06250	COG0733	neurotransmitter:sodium symporter activity
BJD94_RS06260	COG0626	cystathionine gamma-synthase activity
BJD94_RS06265	COG2818	Glycosylase
BJD94_RS06285	COG1983	PspC domain protein
BJD94_RS06295	COG1842	Phage shock protein A
BJD94_RS06300	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
BJD94_RS06325	COG4172	Belongs to the ABC transporter superfamily
BJD94_RS06350	COG1227	inorganic diphosphatase activity
BJD94_RS06380	COG0243	molybdopterin cofactor binding
BJD94_RS06385	COG3005	denitrification pathway
BJD94_RS06390	COG4459	periplasmic nitrate reductase
BJD94_RS06395	COG0390	transport system, permease component
BJD94_RS06400	COG2116	formate transmembrane transporter activity
BJD94_RS06420	COG0583	DNA-binding transcription factor activity
BJD94_RS06425	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
BJD94_RS06435	COG1435	thymidine kinase activity
BJD94_RS06445	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
BJD94_RS06450	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
BJD94_RS06455	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
BJD94_RS06460	COG3012	SEC-C Motif Domain Protein
BJD94_RS06475	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
BJD94_RS06480	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
BJD94_RS06485	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BJD94_RS06485	COG0131	Imidazoleglycerol-phosphate dehydratase
BJD94_RS06490	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
BJD94_RS06495	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
BJD94_RS06500	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
BJD94_RS06505	COG1757	Na H antiporter
BJD94_RS06510	COG2916	Histone family protein nucleoid-structuring protein H-NS
BJD94_RS06515	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD94_RS06525	COG0482	sulfurtransferase activity
BJD94_RS06530	COG2915	High frequency lysogenization protein hflD homolog
BJD94_RS06535	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
BJD94_RS06555	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
BJD94_RS06570	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_RS06580	COG0501	Belongs to the peptidase M48B family
BJD94_RS06585	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
BJD94_RS06600	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
BJD94_RS06615	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
BJD94_RS06620	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
BJD94_RS06635	COG0686	Belongs to the AlaDH PNT family
BJD94_RS06645	COG0583	DNA-binding transcription factor activity
BJD94_RS06670	COG4608	Belongs to the ABC transporter superfamily
BJD94_RS06675	COG0444	Belongs to the ABC transporter superfamily
BJD94_RS06680	COG4166	transmembrane transport
BJD94_RS06685	COG4239	(ABC) transporter, permease
BJD94_RS06690	COG4174	ABC transporter (Permease)
BJD94_RS06695	COG0284	orotidine-5'-phosphate decarboxylase activity
BJD94_RS06700	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
BJD94_RS06705	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
BJD94_RS06715	COG0539	negative regulation of cytoplasmic translation
BJD94_RS06725	COG0616	signal peptide processing
BJD94_RS06730	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_RS06745	COG0587	DNA-directed DNA polymerase activity
BJD94_RS06750	COG0835	chemotaxis
BJD94_RS06750	COG0784	Response regulator, receiver
BJD94_RS06755	COG1940	carbohydrate kinase activity
BJD94_RS06760	COG0469	pyruvate kinase activity
BJD94_RS06765	COG4667	esterase of the alpha-beta hydrolase superfamily
BJD94_RS06780	COG0733	neurotransmitter:sodium symporter activity
BJD94_RS06795	COG1263	PTS System
BJD94_RS06795	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BJD94_RS06800	COG0084	hydrolase, TatD family'
BJD94_RS06810	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
BJD94_RS06815	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
BJD94_RS06830	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD94_RS06845	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD94_RS06850	COG0416	fatty acid biosynthetic process
BJD94_RS06855	COG0333	Belongs to the bacterial ribosomal protein bL32 family
BJD94_RS06860	COG1399	metal-binding, possibly nucleic acid-binding protein
BJD94_RS06865	COG0424	maF-like protein
BJD94_RS06875	COG1530	ribonuclease E activity
BJD94_RS06880	COG0659	secondary active sulfate transmembrane transporter activity
BJD94_RS06885	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
BJD94_RS06890	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
BJD94_RS06900	COG0572	uridine kinase
BJD94_RS06905	COG0489	protein tyrosine kinase activity
BJD94_RS06910	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD94_RS06910	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD94_RS06920	COG3088	subunit of a heme lyase
BJD94_RS06925	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD94_RS06930	COG1138	Cytochrome C-type biogenesis protein
BJD94_RS06935	COG3301	Polysulphide reductase, NrfD
BJD94_RS06940	COG0437	4 iron, 4 sulfur cluster binding
BJD94_RS06945	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
BJD94_RS06950	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
BJD94_RS06975	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
BJD94_RS06980	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD94_RS06985	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
BJD94_RS07050	COG0322	excinuclease ABC activity
BJD94_RS07055	COG2197	response regulator
BJD94_RS07060	COG0417	DNA replication proofreading
BJD94_RS07065	COG5001	Diguanylate cyclase
BJD94_RS07075	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD94_RS07095	COG0009	L-threonylcarbamoyladenylate synthase
BJD94_RS07100	COG0613	PHP domain protein
BJD94_RS07110	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
BJD94_RS07115	COG0512	Glutamine amidotransferase of anthranilate synthase
BJD94_RS07120	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
BJD94_RS07125	COG0135	phosphoribosylanthranilate isomerase activity
BJD94_RS07125	COG0134	indole-3-glycerol-phosphate synthase activity
BJD94_RS07130	COG0133	tryptophan synthase activity
BJD94_RS07140	COG1301	dicarboxylic acid transport
BJD94_RS07160	COG2350	Protein conserved in bacteria
BJD94_RS07170	COG0435	Glutathione S-transferase
BJD94_RS07180	COG0444	Belongs to the ABC transporter superfamily
BJD94_RS07185	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BJD94_RS07190	COG0601	transmembrane transport
BJD94_RS07200	COG0314	molybdopterin synthase activity
BJD94_RS07205	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
BJD94_RS07210	COG0315	cyclic pyranopterin monophosphate synthase activity
BJD94_RS07215	COG0521	Mo-molybdopterin cofactor biosynthetic process
BJD94_RS07225	COG0391	Required for morphogenesis under gluconeogenic growth conditions
BJD94_RS07230	COG2198	Histidine kinase
BJD94_RS07235	COG2204	response regulator
BJD94_RS07240	COG0556	nucleotide-excision repair
BJD94_RS07255	COG4657	Part of a membrane complex involved in electron transport
BJD94_RS07260	COG2878	Part of a membrane complex involved in electron transport
BJD94_RS07265	COG4656	Part of a membrane complex involved in electron transport
BJD94_RS07270	COG4658	electron transport chain
BJD94_RS07275	COG4659	FMN binding
BJD94_RS07280	COG4660	Part of a membrane complex involved in electron transport
BJD94_RS07285	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
BJD94_RS07290	COG0346	lactoylglutathione lyase activity
BJD94_RS07300	COG2885	chlorophyll binding
BJD94_RS07305	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
BJD94_RS07310	COG2056	Na+-H+ antiporter family
BJD94_RS07320	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
BJD94_RS07335	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_RS07340	COG1012	belongs to the aldehyde dehydrogenase family
BJD94_RS07340	COG1454	alcohol dehydrogenase
BJD94_RS07345	COG2095	MarC family integral membrane protein
BJD94_RS07350	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD94_RS07360	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
BJD94_RS07365	COG1757	Na H antiporter
BJD94_RS07380	COG3081	Nucleoid-associated protein
BJD94_RS07385	COG3082	Protein of unknown function (DUF1414)
BJD94_RS07390	COG3083	sulfuric ester hydrolase activity
BJD94_RS07400	COG0569	domain protein
BJD94_RS07405	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BJD94_RS07410	COG2731	YhcH YjgK YiaL family protein
BJD94_RS07425	COG2205	protein histidine kinase activity
BJD94_RS07425	COG0784	Response regulator, receiver
BJD94_RS07430	COG0123	including yeast histone deacetylase and acetoin utilization protein
BJD94_RS07435	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
BJD94_RS07440	COG0778	Nitroreductase
BJD94_RS07445	COG0446	pyridine nucleotide-disulphide oxidoreductase
BJD94_RS07445	COG1902	pentaerythritol trinitrate reductase activity
BJD94_RS07450	COG0616	signal peptide processing
BJD94_RS07455	COG0252	asparaginase activity
BJD94_RS07460	COG3139	Protein of unknown function (DUF1315)
BJD94_RS07475	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BJD94_RS07515	COG0330	HflC and HflK could
BJD94_RS07550	COG3126	Type III secretion system lipoprotein chaperone (YscW)
BJD94_RS07555	COG1946	Acyl-CoA thioesterase
BJD94_RS07565	COG1522	sequence-specific DNA binding
BJD94_RS07570	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BJD94_RS07600	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD94_RS07660	COG0318	PFAM AMP-dependent synthetase and ligase
BJD94_RS07670	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
BJD94_RS07675	COG0596	Alpha beta hydrolase
BJD94_RS07685	COG1169	isochorismate synthase
BJD94_RS07690	COG0436	Aminotransferase
BJD94_RS07695	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
BJD94_RS07700	COG0232	Belongs to the dGTPase family. Type 2 subfamily
BJD94_RS07705	COG3148	PFAM DTW domain containing protein
BJD94_RS07715	COG1555	photosystem II stabilization
BJD94_RS07720	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD94_RS07725	COG0776	regulation of translation
BJD94_RS07730	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
BJD94_RS07735	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
BJD94_RS07750	COG4191	Histidine kinase
BJD94_RS07755	COG2204	response regulator
BJD94_RS07760	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
BJD94_RS07765	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
BJD94_RS07770	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
BJD94_RS07780	COG3842	ATPase activity
BJD94_RS07790	COG1175	transmembrane transport
BJD94_RS07810	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
BJD94_RS07855	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD94_RS07860	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
BJD94_RS07880	COG1216	Glycosyl transferase, family 2
BJD94_RS07885	COG2986	histidine ammonia-lyase
BJD94_RS07910	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
BJD94_RS07920	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_RS07935	COG5002	protein histidine kinase activity
BJD94_RS07940	COG0745	RESPONSE REGULATOR receiver
BJD94_RS07950	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BJD94_RS07960	COG2951	lytic endotransglycosylase activity
BJD94_RS07970	COG0850	regulation of cytokinetic process
BJD94_RS07975	COG2894	cell division
BJD94_RS07980	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
BJD94_RS07985	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
BJD94_RS07990	COG0318	PFAM AMP-dependent synthetase and ligase
BJD94_RS07995	COG0596	Alpha beta hydrolase
BJD94_RS08010	COG1214	PFAM Peptidase M22, glycoprotease
BJD94_RS08015	COG1199	ATP-dependent helicase activity
BJD94_RS08025	COG0788	formyltetrahydrofolate deformylase activity
BJD94_RS08030	COG3102	Protein conserved in bacteria
BJD94_RS08050	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
BJD94_RS08055	COG1918	ferrous iron import across plasma membrane
BJD94_RS08065	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
BJD94_RS08070	COG1121	(ABC) transporter
BJD94_RS08075	COG1108	ABC-type Mn2 Zn2 transport systems permease components
BJD94_RS08090	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD94_RS08095	COG0567	Dehydrogenase, E1 component
BJD94_RS08105	COG1053	succinate dehydrogenase
BJD94_RS08110	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
BJD94_RS08115	COG2009	succinate dehydrogenase
BJD94_RS08125	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
BJD94_RS08135	COG0446	pyridine nucleotide-disulphide oxidoreductase
BJD94_RS08145	COG0251	oxidation-reduction process
BJD94_RS08150	COG2964	Protein conserved in bacteria
BJD94_RS08155	COG0033	Phosphoglucomutase
BJD94_RS08160	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
BJD94_RS08165	COG0596	Alpha beta hydrolase
BJD94_RS08175	COG0716	FMN binding
BJD94_RS08190	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD94_RS08195	COG2190	(PTS) system
BJD94_RS08195	COG1263	PTS System
BJD94_RS08195	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BJD94_RS08200	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BJD94_RS08205	COG1940	carbohydrate kinase activity
BJD94_RS08205	COG1846	Transcriptional regulator
BJD94_RS08210	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD94_RS08210	COG4651	solute:proton antiporter activity
BJD94_RS08215	COG0367	asparagine synthase
BJD94_RS08225	COG3104	oligopeptide transport
BJD94_RS08235	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
BJD94_RS08245	COG0326	Molecular chaperone. Has ATPase activity
BJD94_RS08250	COG3710	Transcriptional regulator
BJD94_RS08270	COG0622	Phosphoesterase
BJD94_RS08295	COG1090	epimerase
BJD94_RS08300	COG0300	oxidoreductase activity
BJD94_RS08310	COG3118	belongs to the thioredoxin family
BJD94_RS08315	COG0330	HflC and HflK could
BJD94_RS08345	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
BJD94_RS08350	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
BJD94_RS08355	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_RS08360	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
BJD94_RS08365	COG2190	(PTS) system
BJD94_RS08370	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_RS08375	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_RS08380	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_RS08385	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
BJD94_RS08395	COG3951	Flagellar rod assembly protein muramidase FlgJ
BJD94_RS08395	COG1705	Flagellar rod assembly protein muramidase FlgJ
BJD94_RS08400	COG1706	bacterial-type flagellum-dependent cell motility
BJD94_RS08415	COG4787	bacterial-type flagellum-dependent cell motility
BJD94_RS08420	COG1749	Flagellar hook protein flgE
BJD94_RS08435	COG1815	bacterial-type flagellum-dependent cell motility
BJD94_RS08440	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD94_RS08445	COG0835	chemotaxis
BJD94_RS08445	COG0784	Response regulator, receiver
BJD94_RS08505	COG2608	mercury ion transmembrane transporter activity
BJD94_RS08505	COG2217	Heavy metal translocating P-type atpase
BJD94_RS08520	COG3735	TraB family
BJD94_RS08540	COG2840	Smr protein MutS2
BJD94_RS08545	COG1187	pseudouridine synthase activity
BJD94_RS08565	COG2877	3-deoxy-8-phosphooctulonate synthase activity
BJD94_RS08570	COG2912	Transglutaminase-like superfamily
BJD94_RS08580	COG2890	protein-(glutamine-N5) methyltransferase activity
BJD94_RS08585	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
BJD94_RS08600	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
BJD94_RS08605	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
BJD94_RS08610	COG0193	aminoacyl-tRNA hydrolase activity
BJD94_RS08700	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD94_RS08705	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD94_RS08710	COG1702	phosphate starvation-inducible protein PhoH
BJD94_RS08715	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
BJD94_RS08720	COG4535	Mg2 and Co2 transporter CorC
BJD94_RS08730	COG2888	peptidyl-tyrosine sulfation
BJD94_RS08735	COG0495	leucyl-tRNA aminoacylation
BJD94_RS08740	COG2980	Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane
BJD94_RS08745	COG1466	dna polymerase III delta subunit
BJD94_RS08750	COG0799	negative regulation of ribosome biogenesis
BJD94_RS08755	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
BJD94_RS08760	COG0768	penicillin binding
BJD94_RS08765	COG0772	Belongs to the SEDS family
BJD94_RS08770	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
BJD94_RS08775	COG1686	Belongs to the peptidase S11 family
BJD94_RS08780	COG2921	Belongs to the UPF0250 family
BJD94_RS08785	COG0321	lipoyl(octanoyl) transferase activity
BJD94_RS08790	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
BJD94_RS08800	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BJD94_RS08830	COG0366	Alpha amylase catalytic
BJD94_RS08835	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BJD94_RS08835	COG1263	PTS System
BJD94_RS08845	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
BJD94_RS08850	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
BJD94_RS08855	COG2011	ABC-type metal ion transport system permease component
BJD94_RS08860	COG1464	Belongs to the NlpA lipoprotein family
BJD94_RS08865	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
BJD94_RS08890	COG1611	Belongs to the LOG family
BJD94_RS08895	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD94_RS08910	COG2363	Small membrane protein
BJD94_RS08920	COG0583	DNA-binding transcription factor activity
BJD94_RS08935	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
BJD94_RS08940	COG1722	exodeoxyribonuclease VII activity
BJD94_RS08945	COG0142	geranyltranstransferase activity
BJD94_RS08955	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
BJD94_RS08960	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
BJD94_RS08965	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD94_RS08970	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
BJD94_RS08985	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD94_RS08985	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
BJD94_RS08990	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
BJD94_RS09000	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
BJD94_RS09010	COG1073	alpha beta
BJD94_RS09015	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
BJD94_RS09020	COG2252	PERMEase
BJD94_RS09025	COG2195	Cleaves the N-terminal amino acid of tripeptides
BJD94_RS09055	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
BJD94_RS09070	COG0583	DNA-binding transcription factor activity
BJD94_RS09075	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
BJD94_RS09080	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
BJD94_RS09085	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
BJD94_RS09115	COG0484	heat shock protein binding
BJD94_RS09120	COG0443	Heat shock 70 kDa protein
BJD94_RS09150	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
BJD94_RS09155	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
BJD94_RS09160	COG0497	DNA recombination
BJD94_RS09165	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD94_RS09170	COG2914	Belongs to the UPF0125 (RnfH) family
BJD94_RS09175	COG2867	negative regulation of translational initiation
BJD94_RS09180	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
BJD94_RS09220	COG0009	L-threonylcarbamoyladenylate synthase
BJD94_RS09240	COG0583	DNA-binding transcription factor activity
BJD94_RS09250	COG1115	amino acid carrier protein
BJD94_RS09255	COG1584	GPR1 FUN34 yaaH family protein
BJD94_RS09265	COG0518	GMP synthase (glutamine-hydrolyzing) activity
BJD94_RS09265	COG0519	Catalyzes the synthesis of GMP from XMP
BJD94_RS09270	COG0517	IMP dehydrogenase activity
BJD94_RS09270	COG0516	GMP reductase activity
BJD94_RS09275	COG1570	exodeoxyribonuclease VII activity
BJD94_RS09285	COG2203	Gaf domain
BJD94_RS09285	COG2199	diguanylate cyclase activity
BJD94_RS09300	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD94_RS09305	COG2976	Protein conserved in bacteria
BJD94_RS09310	COG0124	histidyl-tRNA synthetase
BJD94_RS09315	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
BJD94_RS09320	COG1426	Protein conserved in bacteria
BJD94_RS09330	COG0105	UTP biosynthetic process
BJD94_RS09335	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD94_RS09340	COG2975	iron-sulfur cluster assembly
BJD94_RS09345	COG0633	Ferredoxin
BJD94_RS09350	COG0443	Heat shock 70 kDa protein
BJD94_RS09360	COG0316	Belongs to the HesB IscA family
BJD94_RS09365	COG0822	iron-sulfur transferase activity
BJD94_RS09375	COG1959	2 iron, 2 sulfur cluster binding
BJD94_RS09380	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
BJD94_RS09385	COG0483	inositol monophosphate 1-phosphatase activity
BJD94_RS09400	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD94_RS09405	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD94_RS09410	COG1862	Preprotein translocase
BJD94_RS09415	COG0343	queuine tRNA-ribosyltransferase activity
BJD94_RS09420	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
BJD94_RS09430	COG0517	IMP dehydrogenase activity
BJD94_RS09440	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
BJD94_RS09445	COG0583	DNA-binding transcription factor activity
BJD94_RS09450	COG0450	alkyl hydroperoxide reductase
BJD94_RS09465	COG0704	Plays a role in the regulation of phosphate uptake
BJD94_RS09470	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BJD94_RS09475	COG0581	inorganic phosphate transmembrane transporter activity
BJD94_RS09480	COG0573	inorganic phosphate transmembrane transporter activity
BJD94_RS09485	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
BJD94_RS09490	COG0248	Ppx GppA phosphatase
BJD94_RS09500	COG5002	protein histidine kinase activity
BJD94_RS09505	COG0745	RESPONSE REGULATOR receiver
BJD94_RS09515	COG0826	peptidase U32
BJD94_RS09520	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BJD94_RS09560	COG0542	response to heat
BJD94_RS09575	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD94_RS09585	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BJD94_RS09590	COG1605	Chorismate mutase
BJD94_RS09590	COG0077	Prephenate dehydratase
BJD94_RS09595	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
BJD94_RS09600	COG2973	This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region
BJD94_RS09610	COG0488	(ABC) transporter
BJD94_RS09620	COG0739	heme binding
BJD94_RS09625	COG0287	Prephenate dehydrogenase
BJD94_RS09625	COG1605	Chorismate mutase
BJD94_RS09640	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
BJD94_RS09660	COG1966	Carbon starvation protein
BJD94_RS09665	COG3275	phosphorelay sensor kinase activity
BJD94_RS09675	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
BJD94_RS09680	COG1047	Peptidyl-prolyl cis-trans
BJD94_RS09690	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
BJD94_RS09695	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
BJD94_RS09700	COG0196	riboflavin kinase activity
BJD94_RS09705	COG0728	peptidoglycan biosynthetic process
BJD94_RS09710	COG0268	Binds directly to 16S ribosomal RNA
BJD94_RS09715	COG0640	Transcriptional regulator
BJD94_RS09720	COG0583	DNA-binding transcription factor activity
BJD94_RS09725	COG1283	sodium-dependent phosphate transmembrane transporter activity
BJD94_RS09745	COG0730	response to heat
BJD94_RS09755	COG0494	nUDIX hydrolase
BJD94_RS09760	COG3066	DNA modification
BJD94_RS09770	COG0667	Aldo Keto reductase
BJD94_RS09785	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
BJD94_RS09795	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
BJD94_RS09800	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD94_RS09805	COG4974	Belongs to the 'phage' integrase family
BJD94_RS09825	COG0513	Belongs to the DEAD box helicase family
BJD94_RS09830	COG3022	response to hydroperoxide
BJD94_RS09835	COG1115	amino acid carrier protein
BJD94_RS09850	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
BJD94_RS09860	COG3445	Acts as a radical domain for damaged PFL and possibly other radical proteins
BJD94_RS09865	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
BJD94_RS09870	COG0083	homoserine kinase activity
BJD94_RS09885	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
BJD94_RS09900	COG0745	RESPONSE REGULATOR receiver
BJD94_RS09910	COG0784	Response regulator, receiver
BJD94_RS09910	COG2198	Histidine kinase
BJD94_RS09910	COG5002	protein histidine kinase activity
BJD94_RS09915	COG3706	GGDEF domain
BJD94_RS09915	COG4251	negative regulation of phosphorylation
BJD94_RS09915	COG5001	Diguanylate cyclase
BJD94_RS09915	COG2203	Gaf domain
BJD94_RS09920	COG1242	4 iron, 4 sulfur cluster binding
BJD94_RS09925	COG0070	glutamate synthase
BJD94_RS09925	COG0069	glutamate synthase activity
BJD94_RS09925	COG0067	glutamate synthase
BJD94_RS09935	COG0067	glutamate synthase
BJD94_RS09935	COG0070	glutamate synthase
BJD94_RS09935	COG0069	glutamate synthase activity
BJD94_RS09940	COG0493	'glutamate synthase
BJD94_RS09950	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
BJD94_RS09960	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BJD94_RS09965	COG2860	membrane
BJD94_RS09970	COG0583	DNA-binding transcription factor activity
BJD94_RS09975	COG0730	response to heat
BJD94_RS09985	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
BJD94_RS09990	COG0505	Belongs to the CarA family
BJD94_RS10000	COG0494	nUDIX hydrolase
BJD94_RS10005	COG0653	protein targeting
BJD94_RS10015	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
BJD94_RS10020	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
BJD94_RS10025	COG0849	cell division
BJD94_RS10030	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
BJD94_RS10035	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD94_RS10045	COG0772	Belongs to the SEDS family
BJD94_RS10055	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD94_RS10060	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
BJD94_RS10070	COG0768	penicillin binding
BJD94_RS10075	COG3116	cell division
BJD94_RS10080	COG0275	rRNA processing
BJD94_RS10090	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
BJD94_RS10095	COG3107	peptidoglycan biosynthetic process
BJD94_RS10100	COG0792	nuclease activity
BJD94_RS10105	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
BJD94_RS10110	COG2823	Periplasmic or secreted lipoprotein
BJD94_RS10115	COG2969	positive regulation of protein catabolic process
BJD94_RS10120	COG0625	glutathione transferase activity
BJD94_RS10125	COG2857	Cytochrome c1
BJD94_RS10130	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
BJD94_RS10135	COG0723	plastoquinol--plastocyanin reductase activity
BJD94_RS10140	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BJD94_RS10145	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
BJD94_RS10155	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
BJD94_RS10160	COG3105	Protein conserved in bacteria
BJD94_RS10165	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD94_RS10170	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
BJD94_RS10185	COG3150	esterase
BJD94_RS10195	COG3151	Protein conserved in bacteria
BJD94_RS10200	COG0494	nUDIX hydrolase
BJD94_RS10205	COG1538	Outer membrane efflux protein
BJD94_RS10225	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
BJD94_RS10230	COG3025	triphosphatase activity
BJD94_RS10235	COG1392	Phosphate transport regulator
BJD94_RS10240	COG0306	phosphate transporter
BJD94_RS10245	COG4991	sh3 domain protein
BJD94_RS10250	COG3267	Type II secretory pathway component ExeA
BJD94_RS10250	COG3409	Peptidoglycan-binding domain 1 protein
BJD94_RS10255	COG0617	tRNA 3'-terminal CCA addition
BJD94_RS10260	COG1968	undecaprenyl-diphosphatase activity
BJD94_RS10265	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BJD94_RS10270	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
BJD94_RS10280	COG0596	Alpha beta hydrolase
BJD94_RS10285	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
BJD94_RS10290	COG0828	Belongs to the bacterial ribosomal protein bS21 family
BJD94_RS10295	COG1610	YqeY-like protein
BJD94_RS10315	COG0582	viral genome integration into host DNA
BJD94_RS10370	COG3339	Conserved Protein
BJD94_RS10385	COG2003	Belongs to the UPF0758 family
BJD94_RS10390	COG3547	Transposase (IS116 IS110 IS902 family)
BJD94_RS10415	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD94_RS10420	COG1061	Type III restriction enzyme res subunit
BJD94_RS10425	COG1002	Type II restriction enzyme, methylase subunits
BJD94_RS10440	COG3550	peptidyl-serine autophosphorylation
BJD94_RS10455	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
BJD94_RS10460	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
BJD94_RS10465	COG1349	DNA-binding transcription factor activity
BJD94_RS10480	COG3706	GGDEF domain
BJD94_RS10485	COG0440	acetolactate synthase activity
BJD94_RS10490	COG0028	Belongs to the TPP enzyme family
BJD94_RS10495	COG1022	Amp-dependent synthetase and ligase
BJD94_RS10520	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
BJD94_RS10525	COG0473	3-isopropylmalate dehydrogenase activity
BJD94_RS10535	COG0066	3-isopropylmalate dehydratase activity
BJD94_RS10560	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
BJD94_RS10565	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
BJD94_RS10570	COG2967	ApaG domain
BJD94_RS10585	COG3610	response to peptide
BJD94_RS10590	COG2966	Psort location CytoplasmicMembrane, score
BJD94_RS10600	COG0211	Belongs to the bacterial ribosomal protein bL27 family
BJD94_RS10605	COG0261	This protein binds to 23S rRNA in the presence of protein L20
BJD94_RS10610	COG0142	geranyltranstransferase activity
BJD94_RS10615	COG0039	L-malate dehydrogenase activity
BJD94_RS10620	COG1438	arginine binding
BJD94_RS10625	COG2358	TRAP transporter, solute receptor (TAXI family
BJD94_RS10635	COG0589	response to stress
BJD94_RS10640	COG0204	Acyl-transferase
BJD94_RS10650	COG5007	Belongs to the BolA IbaG family
BJD94_RS10660	COG2854	intermembrane phospholipid transfer
BJD94_RS10665	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
BJD94_RS10670	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
BJD94_RS10675	COG1127	ABC transporter
BJD94_RS10685	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
BJD94_RS10685	COG0517	IMP dehydrogenase activity
BJD94_RS10690	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
BJD94_RS10700	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
BJD94_RS10705	COG1137	ATPase activity
BJD94_RS10715	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
BJD94_RS10720	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_RS10725	COG1660	Displays ATPase and GTPase activities
BJD94_RS10730	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_RS10735	COG2239	Acts as a magnesium transporter
BJD94_RS10740	COG0312	modulator of DNA gyrase
BJD94_RS10745	COG3028	Belongs to the UPF0307 family
BJD94_RS10750	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
BJD94_RS10755	COG1178	ABC-type Fe3 transport system permease component
BJD94_RS10760	COG4143	(ABC) transporter
BJD94_RS10765	COG0163	prenyltransferase activity
BJD94_RS10770	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
BJD94_RS10775	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
BJD94_RS10780	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
BJD94_RS10790	COG2105	PFAM AIG2 family protein
BJD94_RS10795	COG2911	Protein conserved in bacteria
BJD94_RS10800	COG0729	surface antigen
BJD94_RS10815	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
BJD94_RS10830	COG0577	efflux transmembrane transporter activity
BJD94_RS10830	COG1136	(ABC) transporter
BJD94_RS10850	COG0529	Catalyzes the synthesis of activated sulfate
BJD94_RS10855	COG3273	potassium ion transport
BJD94_RS10855	COG0471	metal ion transport
BJD94_RS10860	COG2895	sulfate adenylyltransferase (ATP) activity
BJD94_RS10865	COG0175	sulfate reduction
BJD94_RS10870	COG1648	precorrin-2 dehydrogenase activity
BJD94_RS10870	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD94_RS10875	COG0737	Belongs to the 5'-nucleotidase family
BJD94_RS10885	COG2153	protein acetylation
BJD94_RS10895	COG3061	Opacity-associated protein A
BJD94_RS10895	COG3266	domain, Protein
BJD94_RS10900	COG0545	Peptidyl-prolyl cis-trans isomerase
BJD94_RS10910	COG0203	ribosomal protein L17
BJD94_RS10915	COG0202	RNA polymerase activity
BJD94_RS10920	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
BJD94_RS10925	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
BJD94_RS10930	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
BJD94_RS10935	COG0257	Belongs to the bacterial ribosomal protein bL36 family
BJD94_RS10940	COG0201	protein transport
BJD94_RS10945	COG0200	Binds to the 23S rRNA
BJD94_RS10950	COG1841	ribosomal large subunit assembly
BJD94_RS10955	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
BJD94_RS10960	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
BJD94_RS10965	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
BJD94_RS10970	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
BJD94_RS10975	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
BJD94_RS10980	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
BJD94_RS10985	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
BJD94_RS10990	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
BJD94_RS10995	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
BJD94_RS11000	COG0255	Belongs to the universal ribosomal protein uL29 family
BJD94_RS11005	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
BJD94_RS11010	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
BJD94_RS11020	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
BJD94_RS11025	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
BJD94_RS11030	COG0089	rRNA binding
BJD94_RS11035	COG0088	Forms part of the polypeptide exit tunnel
BJD94_RS11040	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
BJD94_RS11075	COG3064	Membrane
BJD94_RS11100	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
BJD94_RS11130	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
BJD94_RS11135	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
BJD94_RS11140	COG1482	cell wall glycoprotein biosynthetic process
BJD94_RS11155	COG0438	transferase activity, transferring glycosyl groups
BJD94_RS11270	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
BJD94_RS11280	COG1560	Kdo2-lipid A biosynthetic process
BJD94_RS11285	COG0859	PFAM glycosyl transferase family 9
BJD94_RS11290	COG1519	Transferase
BJD94_RS11305	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_RS11310	COG1083	cytidylyl-transferase
BJD94_RS11330	COG2089	acid synthase
BJD94_RS11335	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
BJD94_RS11340	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
BJD94_RS11360	COG0463	Glycosyl transferase, family 2
BJD94_RS11375	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD94_RS11385	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
BJD94_RS11395	COG3083	sulfuric ester hydrolase activity
BJD94_RS11400	COG3642	lipopolysaccharide core region biosynthetic process
BJD94_RS11405	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BJD94_RS11410	COG0859	PFAM glycosyl transferase family 9
BJD94_RS11415	COG0463	Glycosyl transferase, family 2
BJD94_RS11420	COG0859	PFAM glycosyl transferase family 9
BJD94_RS11425	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
BJD94_RS11435	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
BJD94_RS11445	COG0267	Belongs to the bacterial ribosomal protein bL33 family
BJD94_RS11450	COG0227	Belongs to the bacterial ribosomal protein bL28 family
BJD94_RS11455	COG2003	Belongs to the UPF0758 family
BJD94_RS11470	COG1309	transcriptional regulator
BJD94_RS11475	COG1560	Kdo2-lipid A biosynthetic process
BJD94_RS11485	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
BJD94_RS11490	COG1561	YicC-like family, N-terminal region
BJD94_RS11505	COG0653	protein targeting
BJD94_RS11520	COG4608	Belongs to the ABC transporter superfamily
BJD94_RS11525	COG0444	Belongs to the ABC transporter superfamily
BJD94_RS11530	COG0747	negative chemotaxis
BJD94_RS11535	COG4239	(ABC) transporter, permease
BJD94_RS11540	COG4174	ABC transporter (Permease)
BJD94_RS11545	COG4206	TonB-dependent receptor
BJD94_RS11555	COG0811	peptide transport
BJD94_RS11560	COG0811	peptide transport
BJD94_RS11565	COG0848	biopolymer transport protein
BJD94_RS11580	COG0194	GDP metabolic process
BJD94_RS11585	COG1758	RNA polymerase activity
BJD94_RS11590	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD94_RS11595	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD94_RS11600	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
BJD94_RS11605	COG2233	PERMEase
BJD94_RS11625	COG2183	response to ionizing radiation
BJD94_RS11635	COG0596	Alpha beta hydrolase
BJD94_RS11645	COG0316	Belongs to the HesB IscA family
BJD94_RS11645	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
BJD94_RS11650	COG0494	nUDIX hydrolase
BJD94_RS11655	COG1218	3'(2'),5'-bisphosphate nucleotidase
BJD94_RS11665	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
BJD94_RS11670	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
BJD94_RS11675	COG3156	type II secretion system protein K
BJD94_RS11680	COG4795	General secretion pathway protein
BJD94_RS11685	COG2165	general secretion pathway protein
BJD94_RS11690	COG2165	general secretion pathway protein
BJD94_RS11695	COG2165	general secretion pathway protein
BJD94_RS11700	COG1459	type II secretion system
BJD94_RS11705	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD94_RS11715	COG3031	protein transport across the cell outer membrane
BJD94_RS11720	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
BJD94_RS11725	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
BJD94_RS11740	COG0456	acetyltransferase
BJD94_RS11745	COG1490	D-aminoacyl-tRNA deacylase activity
BJD94_RS11750	COG1295	ribonuclease BN
BJD94_RS11760	COG1660	Displays ATPase and GTPase activities
BJD94_RS11765	COG1217	gtp-binding protein TYPA
BJD94_RS11775	COG0174	glutamine synthetase
BJD94_RS11785	COG3852	Histidine kinase
BJD94_RS11795	COG3300	MHYT domain
BJD94_RS11795	COG5001	Diguanylate cyclase
BJD94_RS11825	COG0218	Necessary for normal cell division and for the maintenance of normal septation
BJD94_RS11830	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD94_RS11830	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
BJD94_RS11840	COG0084	hydrolase, TatD family'
BJD94_RS11845	COG0805	protein transport
BJD94_RS11850	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD94_RS11855	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
BJD94_RS11865	COG3165	ubiquinone biosynthetic process from chorismate
BJD94_RS11870	COG2226	methyltransferase
BJD94_RS11875	COG1322	Protein conserved in bacteria
BJD94_RS11975	COG3118	belongs to the thioredoxin family
BJD94_RS11985	COG0248	Ppx GppA phosphatase
BJD94_RS11990	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
BJD94_RS12000	COG0514	ATP-dependent DNA helicase (RecQ)
BJD94_RS12005	COG2962	Rard protein
BJD94_RS12015	COG1280	lysine exporter protein (LysE YggA)
BJD94_RS12025	COG0210	DNA helicase
BJD94_RS12065	COG0006	proline dipeptidase activity
BJD94_RS12065	COG0006	proline dipeptidase activity
BJD94_RS12075	COG2022	thiamine diphosphate biosynthetic process
BJD94_RS12085	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BJD94_RS12095	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
BJD94_RS12100	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
BJD94_RS12105	COG2132	Multicopper oxidase
BJD94_RS12140	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
BJD94_RS12150	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
BJD94_RS12155	COG0408	coproporphyrinogen oxidase activity
BJD94_RS12160	COG0009	L-threonylcarbamoyladenylate synthase
BJD94_RS12165	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
BJD94_RS12175	COG0551	DNA topoisomerase type I activity
BJD94_RS12180	COG2922	Belongs to the Smg family
BJD94_RS12185	COG0758	DNA mediated transformation
BJD94_RS12195	COG0242	peptide deformylase activity
BJD94_RS12200	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
BJD94_RS12205	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BJD94_RS12205	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD94_RS12210	COG0569	domain protein
BJD94_RS12215	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BJD94_RS12220	COG1272	protein, Hemolysin III
BJD94_RS12225	COG4326	sporulation control protein
BJD94_RS12230	COG3084	Protein conserved in bacteria
BJD94_RS12240	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
BJD94_RS12245	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD94_RS12250	COG0204	Acyl-transferase
BJD94_RS12260	COG0606	chelatase, subunit chli
BJD94_RS12270	COG3978	acetolactate synthase activity
BJD94_RS12275	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
BJD94_RS12280	COG0129	dihydroxy-acid dehydratase activity
BJD94_RS12290	COG0583	DNA-binding transcription factor activity
BJD94_RS12295	COG2814	Major facilitator Superfamily
BJD94_RS12305	COG0765	amino acid transport
BJD94_RS12315	COG0355	proton-transporting ATP synthase activity, rotational mechanism
BJD94_RS12320	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
BJD94_RS12325	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
BJD94_RS12330	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
BJD94_RS12335	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
BJD94_RS12340	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
BJD94_RS12350	COG0356	it plays a direct role in the translocation of protons across the membrane
BJD94_RS12355	COG3312	ion transport
BJD94_RS12360	COG1475	DNA binding
BJD94_RS12365	COG1192	Involved in chromosome partitioning
BJD94_RS12370	COG0357	Ribosomal RNA small subunit methyltransferase G
BJD94_RS12375	COG0445	tRNA wobble uridine modification
BJD94_RS12385	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
BJD94_RS12390	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
BJD94_RS12395	COG0706	membrane insertase activity
BJD94_RS12405	COG0594	ribonuclease P activity
BJD94_RS12410	COG0230	Belongs to the bacterial ribosomal protein bL34 family
BJD94_RS12415	COG1126	abc transporter atp-binding protein
BJD94_RS12435	COG0592	DNA-directed DNA polymerase activity
BJD94_RS12445	COG0187	DNA topoisomerase II activity
BJD94_RS12450	COG0071	Belongs to the small heat shock protein (HSP20) family
BJD94_RS12460	COG3977	Valine--pyruvate aminotransferase
BJD94_RS12470	COG0751	glycine-tRNA ligase activity
BJD94_RS12475	COG0752	glycyl-tRNA synthetase alpha subunit
BJD94_RS12480	COG2119	membrane
BJD94_RS12490	COG0425	Belongs to the sulfur carrier protein TusA family
BJD94_RS12505	COG0604	alcohol dehydrogenase
BJD94_RS12510	COG0183	Belongs to the thiolase family
BJD94_RS12520	COG1739	Uncharacterized protein family UPF0029
BJD94_RS12525	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
BJD94_RS12530	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
BJD94_RS12580	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
BJD94_RS12585	COG2960	long-chain fatty acid transporting porin activity
BJD94_RS12590	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD94_RS12595	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
BJD94_RS12600	COG1309	transcriptional regulator
BJD94_RS12640	COG4172	Belongs to the ABC transporter superfamily
BJD94_RS12645	COG4166	transmembrane transport
BJD94_RS12650	COG0601	transmembrane transport
BJD94_RS12655	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BJD94_RS12690	COG2815	serine threonine protein kinase
BJD94_RS12690	COG0515	serine threonine protein kinase
BJD94_RS12700	COG0745	RESPONSE REGULATOR receiver
BJD94_RS12705	COG1609	Transcriptional regulator
BJD94_RS12710	COG0129	dihydroxy-acid dehydratase activity
BJD94_RS12715	COG3265	gluconokinase activity
BJD94_RS12720	COG2610	gluconate transmembrane transporter activity
BJD94_RS12725	COG0800	Aldolase
BJD94_RS12740	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD94_RS12745	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
BJD94_RS12755	COG1522	sequence-specific DNA binding
BJD94_RS12760	COG5002	protein histidine kinase activity
BJD94_RS12760	COG5001	Diguanylate cyclase
BJD94_RS12765	COG0742	ribosomal rna small subunit methyltransferase
BJD94_RS12780	COG0589	response to stress
BJD94_RS12785	COG1528	Iron-storage protein
BJD94_RS12795	COG2081	HI0933 family
BJD94_RS12805	COG2959	enzyme of heme biosynthesis
BJD94_RS12815	COG0181	hydroxymethylbilane synthase activity
BJD94_RS12820	COG3072	Adenylate cyclase
BJD94_RS12825	COG1965	Belongs to the frataxin family
BJD94_RS12835	COG0019	diaminopimelate decarboxylase activity
BJD94_RS12840	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
BJD94_RS12850	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
BJD94_RS12855	COG1011	Hydrolase
BJD94_RS12860	COG2199	diguanylate cyclase activity
BJD94_RS12860	COG2200	EAL domain
BJD94_RS12860	COG3287	FIST C domain
BJD94_RS12865	COG3148	PFAM DTW domain containing protein
BJD94_RS12880	COG0561	phosphatase activity
BJD94_RS12885	COG2267	carboxylic ester hydrolase activity
BJD94_RS12890	COG1280	lysine exporter protein (LysE YggA)
BJD94_RS12895	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
BJD94_RS12900	COG0640	Transcriptional regulator
BJD94_RS12905	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BJD94_RS12950	COG2095	MarC family integral membrane protein
BJD94_RS12960	COG0742	ribosomal rna small subunit methyltransferase
BJD94_RS12965	COG0552	protein localization to endoplasmic reticulum
BJD94_RS12970	COG2884	Cell division ATP-binding protein ftsE
BJD94_RS12975	COG2177	Part of the ABC transporter FtsEX involved in
BJD94_RS12985	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BJD94_RS12990	COG0705	Rhomboid family
BJD94_RS12995	COG1580	Controls the rotational direction of flagella during chemotaxis
BJD94_RS13000	COG3161	chorismate lyase activity
BJD94_RS13020	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
BJD94_RS13030	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD94_RS13050	COG4206	TonB-dependent receptor
BJD94_RS13130	COG3335	DDE superfamily endonuclease
BJD94_RS13145	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD94_RS13155	COG0812	UDP-N-acetylmuramate dehydrogenase activity
BJD94_RS13165	COG1072	(Pantothenic acid kinase))
BJD94_RS13195	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
BJD94_RS13200	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BJD94_RS13215	COG0081	regulation of translation
BJD94_RS13220	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
BJD94_RS13225	COG0222	ribosome binding
BJD94_RS13230	COG0085	RNA polymerase activity
BJD94_RS13235	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
BJD94_RS13240	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
BJD94_RS13260	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
BJD94_RS13265	COG1573	uracil-dna glycosylase
BJD94_RS13275	COG3068	Protein conserved in bacteria
BJD94_RS13280	COG1253	flavin adenine dinucleotide binding
BJD94_RS13300	COG0138	bifunctional purine biosynthesis protein purh
BJD94_RS13305	COG0789	Transcriptional regulator
BJD94_RS13310	COG0840	transmembrane signaling receptor activity
BJD94_RS13315	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
BJD94_RS13325	COG2264	protein methyltransferase activity
BJD94_RS13330	COG0439	Biotin carboxylase
BJD94_RS13335	COG0511	ligase activity, forming carbon-carbon bonds
BJD94_RS13340	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
BJD94_RS13345	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BJD94_RS13360	COG2814	Major facilitator Superfamily
BJD94_RS13365	COG2198	Histidine kinase
BJD94_RS13365	COG2205	protein histidine kinase activity
BJD94_RS13365	COG0784	Response regulator, receiver
BJD94_RS13380	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BJD94_RS13390	COG2095	MarC family integral membrane protein
BJD94_RS13400	COG4232	protein-disulfide reductase activity
BJD94_RS13405	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
BJD94_RS13410	COG1027	Aspartate ammonia-lyase
BJD94_RS13420	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
BJD94_RS13425	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
BJD94_RS13430	COG2205	protein histidine kinase activity
BJD94_RS13435	COG0745	RESPONSE REGULATOR receiver
BJD94_RS13440	COG3678	ATP-independent chaperone mediated protein folding
BJD94_RS13450	COG0205	6-phosphofructokinase activity
BJD94_RS13455	COG0534	Mate efflux family protein
BJD94_RS13460	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BJD94_RS13465	COG0459	protein refolding
BJD94_RS13475	COG1285	pathogenesis
BJD94_RS13480	COG1509	lysine 2,3-aminomutase activity
BJD94_RS13485	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
BJD94_RS13495	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
BJD94_RS13500	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
BJD94_RS13505	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
BJD94_RS13510	COG1053	succinate dehydrogenase
BJD94_RS13515	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
BJD94_RS13535	COG4942	peptidase
BJD94_RS13540	COG1045	serine acetyltransferase
BJD94_RS13545	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
BJD94_RS13550	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
BJD94_RS13555	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BJD94_RS13565	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
BJD94_RS13575	COG0471	metal ion transport
BJD94_RS13580	COG0688	phosphatidylethanolamine metabolic process
BJD94_RS13585	COG1162	GTPase activity
BJD94_RS13590	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
BJD94_RS13650	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
BJD94_RS13655	COG0802	atpase or kinase
BJD94_RS13660	COG0860	N-Acetylmuramoyl-L-alanine amidase
BJD94_RS13665	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
BJD94_RS13675	COG1923	regulation of RNA biosynthetic process
BJD94_RS13680	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
BJD94_RS13685	COG0330	HflC and HflK could
BJD94_RS13690	COG0330	HflC and HflK could
BJD94_RS13695	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
BJD94_RS13700	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BJD94_RS13705	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
BJD94_RS13715	COG1959	2 iron, 2 sulfur cluster binding
BJD94_RS13720	COG0402	S-adenosylhomocysteine deaminase activity
BJD94_RS13725	COG0557	exoribonuclease II activity
BJD94_RS13730	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD94_RS13735	COG0546	phosphoglycolate phosphatase activity
BJD94_RS13740	COG0180	Tryptophanyl-tRNA synthetase
BJD94_RS13760	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
BJD94_RS13770	COG1012	belongs to the aldehyde dehydrogenase family
BJD94_RS13780	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD94_RS13785	COG3954	Phosphoribulokinase
BJD94_RS13790	COG3089	Belongs to the UPF0270 family
BJD94_RS13795	COG0429	hydrolase of the alpha beta-hydrolase fold
BJD94_RS13805	COG0488	(ABC) transporter
BJD94_RS13810	COG2249	NAD(P)H dehydrogenase (quinone) activity
BJD94_RS13825	COG1047	Peptidyl-prolyl cis-trans
BJD94_RS13835	COG2900	Belongs to the SlyX family
BJD94_RS13845	COG0545	Peptidyl-prolyl cis-trans isomerase
BJD94_RS13850	COG2964	Protein conserved in bacteria
BJD94_RS13855	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
BJD94_RS13870	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
BJD94_RS13875	COG0049	tRNA binding
BJD94_RS13880	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BJD94_RS13890	COG2906	2 iron, 2 sulfur cluster binding
BJD94_RS13900	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BJD94_RS13905	COG0149	triose-phosphate isomerase activity
BJD94_RS13930	COG1494	fructose-1,6-bisphosphatase
BJD94_RS13940	COG3074	FtsZ-dependent cytokinesis
BJD94_RS13950	COG1575	Belongs to the MenA family. Type 1 subfamily
BJD94_RS13955	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
BJD94_RS13960	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
BJD94_RS13970	COG1609	Transcriptional regulator
BJD94_RS13975	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
BJD94_RS13985	COG0281	malic enzyme
BJD94_RS13990	COG3060	This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis
BJD94_RS13995	COG0626	cystathionine gamma-synthase activity
BJD94_RS14000	COG0527	aspartate kinase activity
BJD94_RS14000	COG0460	homoserine dehydrogenase
BJD94_RS14005	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
BJD94_RS14015	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
BJD94_RS14020	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD94_RS14025	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
BJD94_RS14035	COG0137	argininosuccinate synthase activity
BJD94_RS14040	COG0165	Argininosuccinate lyase
BJD94_RS14040	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
BJD94_RS14055	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
BJD94_RS14085	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
BJD94_RS14090	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
BJD94_RS14100	COG0338	D12 class N6 adenine-specific DNA methyltransferase
BJD94_RS14105	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
BJD94_RS14110	COG0360	Binds together with S18 to 16S ribosomal RNA
BJD94_RS14115	COG2965	DNA replication, synthesis of RNA primer
BJD94_RS14125	COG0359	binds to the 23S rRNA
BJD94_RS14140	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
BJD94_RS14150	COG0432	Pfam Uncharacterised protein family UPF0047
BJD94_RS14165	COG0735	belongs to the Fur family
BJD94_RS14195	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD94_RS14290	COG1410	methionine synthase
BJD94_RS14290	COG0646	methionine synthase
BJD94_RS14295	COG0527	aspartate kinase activity
BJD94_RS14305	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BJD94_RS14315	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
BJD94_RS14335	COG2199	diguanylate cyclase activity
BJD94_RS14335	COG2200	EAL domain
BJD94_RS14360	COG3267	Type II secretory pathway component ExeA
BJD94_RS14360	COG3409	Peptidoglycan-binding domain 1 protein
BJD94_RS14370	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD94_RS14375	COG1459	type II secretion system
BJD94_RS14385	COG2165	general secretion pathway protein
BJD94_RS14390	COG2165	general secretion pathway protein
BJD94_RS14420	COG1077	Cell shape determining protein MreB Mrl
BJD94_RS14425	COG1792	Involved in formation and maintenance of cell shape
BJD94_RS14430	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
BJD94_RS14435	COG0424	maF-like protein
BJD94_RS14445	COG3164	Protein of unknown function
BJD94_RS14450	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD94_RS14455	COG0312	modulator of DNA gyrase
BJD94_RS14460	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
BJD94_RS14465	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
BJD94_RS14475	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
BJD94_RS14480	COG0251	oxidation-reduction process
BJD94_RS14515	COG0456	acetyltransferase
BJD94_RS14525	COG4269	membrane
BJD94_RS14535	COG0525	valine-tRNA ligase activity
BJD94_RS14540	COG2927	DNA polymerase III (CHI subunit)
BJD94_RS14545	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
BJD94_RS14550	COG0795	lipopolysaccharide-transporting ATPase activity
BJD94_RS14555	COG0795	lipopolysaccharide-transporting ATPase activity
BJD94_RS14570	COG0726	polysaccharide deacetylase
BJD94_RS14575	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BJD94_RS14585	COG1447	Phosphotransferase system cellobiose-specific component IIA
BJD94_RS14590	COG1486	melibiose metabolic process
BJD94_RS14595	COG3394	polysaccharide catabolic process
BJD94_RS14600	COG1609	Transcriptional regulator
BJD94_RS14725	COG0741	lytic transglycosylase activity
BJD94_RS14730	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
BJD94_RS14740	COG0220	tRNA (guanine-N7-)-methyltransferase activity
BJD94_RS14745	COG2066	Belongs to the glutaminase family
BJD94_RS14750	COG0635	Involved in the biosynthesis of porphyrin-containing compound
BJD94_RS14755	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
BJD94_RS14770	COG0762	integral membrane protein
BJD94_RS14775	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
BJD94_RS14780	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
BJD94_RS14795	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
BJD94_RS14800	COG1678	Uncharacterized ACR, COG1678
BJD94_RS14810	COG1385	rRNA (uridine-N3-)-methyltransferase activity
BJD94_RS14820	COG2356	endonuclease I
BJD94_RS14835	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
BJD94_RS14840	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BJD94_RS14850	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
BJD94_RS14855	COG0126	phosphoglycerate kinase activity
BJD94_RS14860	COG0191	fructose-bisphosphate aldolase activity
BJD94_RS14865	COG0668	transmembrane transport
BJD94_RS14870	COG1279	arginine transmembrane transporter activity
BJD94_RS14885	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BJD94_RS14895	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
BJD94_RS14905	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
BJD94_RS14910	COG3079	Belongs to the UPF0149 family
BJD94_RS14915	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD94_RS14920	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
BJD94_RS14935	COG0354	folic acid binding
BJD94_RS14950	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
BJD94_RS14955	COG1595	DNA-templated transcription, initiation
BJD94_RS14970	COG3086	response to oxidative stress
BJD94_RS14975	COG0481	GTPase activity
BJD94_RS14990	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
BJD94_RS14995	COG1381	Involved in DNA repair and RecF pathway recombination
BJD94_RS15000	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
BJD94_RS15005	COG0736	holo-[acyl-carrier-protein] synthase activity
BJD94_RS15025	COG2205	protein histidine kinase activity
BJD94_RS15025	COG3437	response regulator, receiver
BJD94_RS15025	COG3850	Histidine kinase
BJD94_RS15025	COG4999	Histidine kinase
BJD94_RS15030	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD94_RS15035	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
BJD94_RS15040	COG3956	TIGRFAM MazG family protein
BJD94_RS15045	COG0504	CTP synthase activity
BJD94_RS15055	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
BJD94_RS15065	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
BJD94_RS15070	COG0585	pseudouridine synthase activity
BJD94_RS15080	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
BJD94_RS15085	COG1388	LysM domain
BJD94_RS15085	COG4942	peptidase
BJD94_RS15090	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
BJD94_RS15095	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
BJD94_RS15105	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
BJD94_RS15115	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BJD94_RS15120	COG0527	aspartate kinase activity
BJD94_RS15125	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
BJD94_RS15170	COG3630	sodium ion export across plasma membrane
BJD94_RS15175	COG5016	pyruvate
BJD94_RS15175	COG0511	ligase activity, forming carbon-carbon bonds
BJD94_RS15180	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
BJD94_RS15190	COG1238	metal cluster binding
BJD94_RS15195	COG0612	Peptidase, M16
BJD94_RS15210	COG1854	S-ribosylhomocysteine lyase activity
BJD94_RS15215	COG4536	flavin adenine dinucleotide binding
BJD94_RS15220	COG4137	Cytochrome C assembly protein
BJD94_RS15225	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
BJD94_RS15230	COG0228	four-way junction DNA binding
BJD94_RS15235	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
BJD94_RS15240	COG0336	Belongs to the RNA methyltransferase TrmD family
BJD94_RS15245	COG0335	large ribosomal subunit rRNA binding
BJD94_RS15250	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
BJD94_RS15260	COG0237	dephospho-CoA kinase activity
BJD94_RS15270	COG1459	type II secretion system
BJD94_RS15275	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
BJD94_RS15290	COG3023	N-Acetylmuramoyl-L-alanine amidase
BJD94_RS15295	COG2186	Transcriptional regulator
BJD94_RS15300	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
BJD94_RS15305	COG0508	dehydrogenase complex catalyzes the overall conversion of
BJD94_RS15310	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD94_RS15325	COG0288	reversible hydration of carbon dioxide
BJD94_RS15330	COG0659	secondary active sulfate transmembrane transporter activity
BJD94_RS15335	COG1131	(ABC) transporter
BJD94_RS15340	COG0842	Transport permease protein
BJD94_RS15350	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
BJD94_RS15355	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
BJD94_RS15365	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
BJD94_RS15370	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
BJD94_RS15375	COG1489	DNA binding
BJD94_RS15380	COG1643	Atp-dependent helicase
BJD94_RS15385	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
BJD94_RS15390	COG1752	Esterase of the alpha-beta hydrolase superfamily
BJD94_RS15395	COG1049	propionate catabolic process, 2-methylcitrate cycle
BJD94_RS15400	COG1929	Belongs to the glycerate kinase type-1 family
BJD94_RS15405	COG2610	gluconate transmembrane transporter activity
BJD94_RS15410	COG3835	regulator
BJD94_RS15415	COG3112	Uncharacterised protein family (UPF0231)
BJD94_RS15420	COG0347	Belongs to the P(II) protein family
BJD94_RS15425	COG0004	ammonium transporteR
BJD94_RS15430	COG1840	ABC-type Fe3 transport system, periplasmic component
BJD94_RS15440	COG3842	ATPase activity
BJD94_RS15445	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD94_RS15460	COG2971	BadF BadG BcrA BcrD
BJD94_RS15470	COG4608	Belongs to the ABC transporter superfamily
BJD94_RS15475	COG0444	Belongs to the ABC transporter superfamily
BJD94_RS15480	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BJD94_RS15485	COG0601	transmembrane transport
BJD94_RS15490	COG0747	negative chemotaxis
BJD94_RS15495	COG2205	protein histidine kinase activity
BJD94_RS15495	COG0784	Response regulator, receiver
BJD94_RS15505	COG0628	permease
BJD94_RS15530	COG0739	heme binding
BJD94_RS15535	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BJD94_RS15540	COG2832	Protein of unknown function (DUF454)
BJD94_RS15545	COG2027	D-alanyl-D-alanine carboxypeptidase
BJD94_RS15570	COG1534	Rna-binding protein
BJD94_RS15575	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
BJD94_RS15580	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
BJD94_RS15585	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
BJD94_RS15590	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD94_RS15595	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
BJD94_RS15610	COG0779	Required for maturation of 30S ribosomal subunits
BJD94_RS15615	COG0195	Participates in both transcription termination and antitermination
BJD94_RS15625	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
BJD94_RS15630	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
BJD94_RS15635	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
BJD94_RS15660	COG1185	polyribonucleotide nucleotidyltransferase activity
BJD94_RS15675	COG0534	Mate efflux family protein
BJD94_RS15680	COG0826	peptidase U32
BJD94_RS15685	COG0826	peptidase U32
BJD94_RS15695	COG3154	lipid carrier protein
BJD94_RS15700	COG3153	acetyltransferase
BJD94_RS15710	COG0456	acetyltransferase
BJD94_RS15720	COG3706	GGDEF domain
BJD94_RS15730	COG0084	hydrolase, TatD family'
BJD94_RS15735	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BJD94_RS15740	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
BJD94_RS15745	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
BJD94_RS15750	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
BJD94_RS15755	COG0813	purine-nucleoside phosphorylase activity
BJD94_RS15765	COG0560	Phosphoserine phosphatase
BJD94_RS15775	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
BJD94_RS15795	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BJD94_RS15800	COG1022	Amp-dependent synthetase and ligase
BJD94_RS15835	COG4964	Belongs to the GSP D family
BJD94_RS15885	COG2059	Chromate
BJD94_RS15890	COG0583	DNA-binding transcription factor activity
BJD94_RS15900	COG3408	Glycogen debranching enzyme
BJD94_RS15900	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
BJD94_RS15905	COG0531	amino acid
BJD94_RS15910	COG0531	amino acid
BJD94_RS15915	COG2731	YhcH YjgK YiaL family protein
BJD94_RS15920	COG3250	beta-galactosidase activity
BJD94_RS15930	COG1609	Transcriptional regulator
BJD94_RS15935	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
BJD94_RS15950	COG2017	converts alpha-aldose to the beta-anomer
BJD94_RS15955	COG0840	transmembrane signaling receptor activity
BJD94_RS15965	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
BJD94_RS15980	COG0189	ligase activity
BJD94_RS15980	COG0569	domain protein
BJD94_RS15995	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
BJD94_RS16000	COG1349	DNA-binding transcription factor activity
BJD94_RS16005	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
BJD94_RS16010	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
BJD94_RS16015	COG2171	N-acyltransferase activity
BJD94_RS16025	COG3141	response to X-ray
BJD94_RS16040	COG3083	sulfuric ester hydrolase activity
BJD94_RS16045	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
BJD94_RS16050	COG1074	ATP-dependent DNA helicase activity
BJD94_RS16055	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
BJD94_RS16075	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
BJD94_RS16080	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
BJD94_RS16085	COG2166	iron-sulfur cluster assembly
BJD94_RS16095	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
BJD94_RS16100	COG0693	protein deglycase activity
BJD94_RS16105	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
BJD94_RS16120	COG1595	DNA-templated transcription, initiation
BJD94_RS16130	COG2211	Major facilitator Superfamily
BJD94_RS16145	COG2813	Specifically methylates the guanine in position
BJD94_RS16150	COG0271	Belongs to the BolA IbaG family
BJD94_RS16160	COG1805	sodium ion transport
BJD94_RS16165	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
BJD94_RS16200	COG0010	Belongs to the arginase family
BJD94_RS16205	COG0513	Belongs to the DEAD box helicase family
BJD94_RS16215	COG0523	cobalamin synthesis protein
BJD94_RS16225	COG2199	diguanylate cyclase activity
BJD94_RS16245	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD94_RS16250	COG1116	anion transmembrane transporter activity
BJD94_RS16255	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
BJD94_RS16270	COG3707	response regulator
BJD94_RS16285	COG1648	precorrin-2 dehydrogenase activity
BJD94_RS16285	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
BJD94_RS16290	COG0243	molybdopterin cofactor binding
BJD94_RS16300	COG0366	Alpha amylase catalytic
BJD94_RS16305	COG0840	transmembrane signaling receptor activity
BJD94_RS16310	COG0840	transmembrane signaling receptor activity
BJD94_RS16325	COG2271	Major facilitator Superfamily
BJD94_RS16330	COG0584	glycerophosphoryl diester phosphodiesterase
BJD94_RS16335	COG0312	modulator of DNA gyrase
BJD94_RS16340	COG0312	modulator of DNA gyrase
BJD94_RS16350	COG3069	C4-dicarboxylate transmembrane transporter activity
BJD94_RS16355	COG1704	LemA family
BJD94_RS16360	COG0501	Belongs to the peptidase M48B family
BJD94_RS16380	COG3209	COG3209 Rhs family protein
BJD94_RS16460	COG0631	protein serine/threonine phosphatase activity
BJD94_RS16495	COG2815	serine threonine protein kinase
BJD94_RS16495	COG0515	serine threonine protein kinase
BJD94_RS16515	COG3530	Putative quorum-sensing-regulated virulence factor
BJD94_RS16535	COG2154	pterin-4-alpha-carbinolamine dehydratase
BJD94_RS16540	COG3186	Phenylalanine-4-hydroxylase
BJD94_RS16545	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
BJD94_RS16570	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
BJD94_RS16580	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BJD94_RS16580	COG4191	Histidine kinase
BJD94_RS16585	COG3437	response regulator, receiver
BJD94_RS16585	COG0784	Response regulator, receiver
BJD94_RS16650	COG3064	Membrane
BJD94_RS16650	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
BJD94_RS16650	COG1073	alpha beta
BJD94_RS16655	COG2994	toxin metabolic process
BJD94_RS16690	COG5642	Protein of unknown function (DUF2384)
BJD94_RS16700	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_RS16710	COG1024	Enoyl-CoA hydratase
BJD94_RS16715	COG1024	Enoyl-CoA hydratase
BJD94_RS16730	COG0183	Belongs to the thiolase family
BJD94_RS16740	COG1960	acyl-CoA dehydrogenase activity
BJD94_RS16745	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
BJD94_RS16750	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
BJD94_RS16770	COG1278	Cold shock
BJD94_RS16785	COG1309	transcriptional regulator
BJD94_RS16790	COG2130	NADP-dependent
BJD94_RS16805	COG0457	Tetratricopeptide repeat
BJD94_RS16805	COG3710	Transcriptional regulator
BJD94_RS16820	COG2197	response regulator
BJD94_RS16825	COG3851	Histidine kinase
BJD94_RS16830	COG2271	Major facilitator Superfamily
BJD94_RS16835	COG1482	cell wall glycoprotein biosynthetic process
BJD94_RS16845	COG2199	diguanylate cyclase activity
BJD94_RS16845	COG2203	Gaf domain
BJD94_RS16855	COG3036	rescue of stalled ribosome
BJD94_RS16860	COG1278	Cold shock
BJD94_RS16890	COG0545	Peptidyl-prolyl cis-trans isomerase
BJD94_RS16895	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD94_RS16900	COG0840	transmembrane signaling receptor activity
BJD94_RS16920	COG2195	Cleaves the N-terminal amino acid of tripeptides
BJD94_RS16930	COG4989	oxidoreductase activity
BJD94_RS16950	COG0038	chloride channel
BJD94_RS16960	COG1914	H( )-stimulated, divalent metal cation uptake system
BJD94_RS16965	COG0302	gtp cyclohydrolase
BJD94_RS16970	COG0303	'Molybdopterin
BJD94_RS16975	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
BJD94_RS16985	COG2897	thiosulfate sulfurtransferase activity
BJD94_RS17005	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
BJD94_RS17010	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
BJD94_RS17025	COG0840	transmembrane signaling receptor activity
BJD94_RS17030	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD94_RS17040	COG0109	protoheme IX farnesyltransferase activity
BJD94_RS17045	COG1612	heme a metabolic process
BJD94_RS17070	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
BJD94_RS17075	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
BJD94_RS17080	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
BJD94_RS17085	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
BJD94_RS17095	COG1280	lysine exporter protein (LysE YggA)
BJD94_RS17120	COG1846	Transcriptional regulator
BJD94_RS17125	COG1764	response to oxidative stress
BJD94_RS17135	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
BJD94_RS17150	COG0697	spore germination
BJD94_RS17165	COG2814	Major facilitator Superfamily
BJD94_RS17170	COG0583	DNA-binding transcription factor activity
BJD94_RS17175	COG4251	negative regulation of phosphorylation
BJD94_RS17175	COG3706	GGDEF domain
BJD94_RS17175	COG2203	Gaf domain
BJD94_RS17175	COG5001	Diguanylate cyclase
BJD94_RS17180	COG0251	oxidation-reduction process
BJD94_RS17195	COG4145	pantothenate transmembrane transporter activity
BJD94_RS17205	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
BJD94_RS17215	COG1737	Transcriptional regulator
BJD94_RS17215	COG0837	glucose binding
BJD94_RS17225	COG1131	(ABC) transporter
BJD94_RS17230	COG0842	Transport permease protein
BJD94_RS17260	COG1846	Transcriptional regulator
BJD94_RS17275	COG0513	Belongs to the DEAD box helicase family
BJD94_RS17300	COG3568	Endonuclease Exonuclease Phosphatase
BJD94_RS17320	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
BJD94_RS17350	COG0516	GMP reductase activity
BJD94_RS17360	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
BJD94_RS17360	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
BJD94_RS17380	COG2197	response regulator
BJD94_RS17385	COG3850	Histidine kinase
BJD94_RS17390	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
BJD94_RS17400	COG0243	molybdopterin cofactor binding
BJD94_RS17410	COG3005	denitrification pathway
BJD94_RS17435	COG0183	Belongs to the thiolase family
BJD94_RS17445	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD94_RS17450	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
BJD94_RS17510	COG2827	Endonuclease containing a URI domain
BJD94_RS17515	COG3132	Protein of unknown function, DUF480
BJD94_RS17525	COG2926	Belongs to the UPF0265 family
BJD94_RS17535	COG1482	cell wall glycoprotein biosynthetic process
BJD94_RS17550	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
BJD94_RS17570	COG0383	alpha-mannosidase activity
BJD94_RS17580	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
BJD94_RS17605	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
BJD94_RS17620	COG5002	protein histidine kinase activity
BJD94_RS17620	COG2205	protein histidine kinase activity
BJD94_RS17620	COG0784	Response regulator, receiver
BJD94_RS17645	COG0583	DNA-binding transcription factor activity
BJD94_RS17650	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
BJD94_RS17670	COG1522	sequence-specific DNA binding
BJD94_RS17675	COG0531	amino acid
BJD94_RS17680	COG0121	glutamine amidotransferase
BJD94_RS17695	COG2205	protein histidine kinase activity
BJD94_RS17700	COG0745	RESPONSE REGULATOR receiver
BJD94_RS17725	COG2239	Acts as a magnesium transporter
BJD94_RS17735	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
BJD94_RS17740	COG0402	S-adenosylhomocysteine deaminase activity
BJD94_RS17745	COG1067	ATP-dependent peptidase activity
BJD94_RS17755	COG4172	Belongs to the ABC transporter superfamily
BJD94_RS17760	COG1505	serine-type exopeptidase activity
BJD94_RS17765	COG0583	DNA-binding transcription factor activity
BJD94_RS17770	COG1620	l-lactate permease
BJD94_RS17780	COG1139	Iron-sulfur cluster binding protein
BJD94_RS17810	COG2814	Major facilitator Superfamily
BJD94_RS17855	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
BJD94_RS17870	COG3015	lipoprotein NlpE involved in copper resistance
BJD94_RS17875	COG1126	abc transporter atp-binding protein
BJD94_RS17880	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BJD94_RS17885	COG4215	(ABC) transporter
BJD94_RS17890	COG4160	amino acid transport
BJD94_RS17905	COG5002	protein histidine kinase activity
BJD94_RS17905	COG5001	Diguanylate cyclase
BJD94_RS17910	COG2755	lipolytic protein G-D-S-L family
BJD94_RS17920	COG0840	transmembrane signaling receptor activity
BJD94_RS17925	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
BJD94_RS17955	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
BJD94_RS17960	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_RS17965	COG1169	isochorismate synthase
BJD94_RS17970	COG1021	2,3-dihydroxybenzoate-AMP ligase
BJD94_RS17990	COG1021	2,3-dihydroxybenzoate-AMP ligase
BJD94_RS18000	COG4607	ABC-type enterochelin transport system periplasmic component
BJD94_RS18005	COG4774	siderophore transport
BJD94_RS18005	COG1629	transport
BJD94_RS18015	COG0189	ligase activity
BJD94_RS18020	COG0189	ligase activity
BJD94_RS18020	COG4067	protein conserved in archaea
BJD94_RS18045	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD94_RS18060	COG3033	Beta-eliminating lyase
BJD94_RS18065	COG0814	amino acid
BJD94_RS18070	COG0488	(ABC) transporter
BJD94_RS18085	COG1609	Transcriptional regulator
BJD94_RS18090	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_RS18105	COG0242	peptide deformylase activity
BJD94_RS18115	COG1253	flavin adenine dinucleotide binding
BJD94_RS18120	COG1012	belongs to the aldehyde dehydrogenase family
BJD94_RS18125	COG3284	Transcriptional regulator
BJD94_RS18135	COG1879	ABC-type sugar transport system periplasmic component
BJD94_RS18140	COG0625	glutathione transferase activity
BJD94_RS18150	COG0384	phenazine biosynthesis protein PhzF
BJD94_RS18155	COG2197	response regulator
BJD94_RS18160	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
BJD94_RS18165	COG0673	inositol 2-dehydrogenase activity
BJD94_RS18190	COG2015	COG2015, Alkyl sulfatase and related hydrolases
BJD94_RS18200	COG0583	DNA-binding transcription factor activity
BJD94_RS18205	COG2194	sulfuric ester hydrolase activity
BJD94_RS18215	COG0798	PFAM Bile acid sodium symporter
BJD94_RS18220	COG0640	Transcriptional regulator
BJD94_RS18235	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
BJD94_RS18240	COG0700	Nucleoside recognition
BJD94_RS18245	COG3366	ferrous iron transmembrane transporter activity
BJD94_RS18255	COG0366	Alpha amylase catalytic
BJD94_RS18260	COG0800	Aldolase
BJD94_RS18265	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD94_RS18270	COG0697	spore germination
BJD94_RS18280	COG0583	DNA-binding transcription factor activity
BJD94_RS18295	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
BJD94_RS18305	COG2985	domain, Protein
BJD94_RS18330	COG2272	Belongs to the type-B carboxylesterase lipase family
BJD94_RS18335	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
BJD94_RS18340	COG0729	surface antigen
BJD94_RS18350	COG1917	Cupin 2, conserved barrel domain protein
BJD94_RS18360	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_RS18400	COG0668	transmembrane transport
BJD94_RS18440	COG0494	nUDIX hydrolase
BJD94_RS18445	COG1881	PFAM PEBP family protein
BJD94_RS18450	COG2207	Transcriptional regulator
BJD94_RS18455	COG3046	protein related to deoxyribodipyrimidine photolyase
BJD94_RS18470	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BJD94_RS18470	COG1263	PTS System
BJD94_RS18485	COG0454	-acetyltransferase
BJD94_RS18495	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
BJD94_RS18520	COG1858	cytochrome C peroxidase
BJD94_RS18535	COG2207	Transcriptional regulator
BJD94_RS18540	COG2814	Major facilitator Superfamily
BJD94_RS18570	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
BJD94_RS18580	COG0583	DNA-binding transcription factor activity
BJD94_RS18605	COG0513	Belongs to the DEAD box helicase family
BJD94_RS18640	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
BJD94_RS18650	COG1357	PFAM Pentapeptide repeats (8 copies)
BJD94_RS18670	COG3437	response regulator, receiver
BJD94_RS18680	COG0579	oxidoreductase
BJD94_RS18715	COG2015	COG2015, Alkyl sulfatase and related hydrolases
BJD94_RS18730	COG2205	protein histidine kinase activity
BJD94_RS18780	COG2176	DNA-directed DNA polymerase activity
BJD94_RS18785	COG0577	efflux transmembrane transporter activity
BJD94_RS18785	COG1136	(ABC) transporter
BJD94_RS18790	COG1136	(ABC) transporter
BJD94_RS18790	COG0577	efflux transmembrane transporter activity
BJD94_RS18820	COG1120	ATPase activity
BJD94_RS18825	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
BJD94_RS18855	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_RS18860	COG3716	PTS system mannose fructose sorbose family IID component
BJD94_RS18870	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
BJD94_RS18875	COG2222	sugar isomerase
BJD94_RS18885	COG1349	DNA-binding transcription factor activity
BJD94_RS18895	COG1349	DNA-binding transcription factor activity
BJD94_RS18915	COG2015	COG2015, Alkyl sulfatase and related hydrolases
BJD94_RS18965	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD94_RS18970	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD94_RS18990	COG0840	transmembrane signaling receptor activity
BJD94_RS19005	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
BJD94_RS19035	COG2258	MOSC domain
BJD94_RS19055	COG1757	Na H antiporter
BJD94_RS19060	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
BJD94_RS19065	COG0513	Belongs to the DEAD box helicase family
BJD94_RS19075	COG1132	(ABC) transporter
BJD94_RS19095	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
BJD94_RS19125	COG0259	pyridoxamine-phosphate oxidase activity
BJD94_RS19135	COG2204	response regulator
BJD94_RS19165	COG3069	C4-dicarboxylate transmembrane transporter activity
BJD94_RS19170	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
BJD94_RS19185	COG0459	protein refolding
BJD94_RS19190	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
BJD94_RS19205	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
BJD94_RS19205	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
BJD94_RS19210	COG1737	Transcriptional regulator
BJD94_RS19215	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
BJD94_RS19230	COG0406	alpha-ribazole phosphatase activity
BJD94_RS19285	COG0840	transmembrane signaling receptor activity
BJD94_RS19295	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
BJD94_RS19300	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD94_RS19305	COG0840	transmembrane signaling receptor activity
BJD94_RS19310	COG0835	chemotaxis
BJD94_RS19325	COG0745	RESPONSE REGULATOR receiver
BJD94_RS19335	COG1444	tRNA N-acetyltransferase activity
BJD94_RS19360	COG4608	Belongs to the ABC transporter superfamily
BJD94_RS19365	COG0444	Belongs to the ABC transporter superfamily
BJD94_RS19375	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BJD94_RS19375	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
BJD94_RS19395	COG0217	transcriptional regulatory protein
BJD94_RS19410	COG1136	(ABC) transporter
BJD94_RS19415	COG4591	ABC-type transport system involved in lipoprotein release permease component
BJD94_RS19430	COG3275	phosphorelay sensor kinase activity
BJD94_RS19455	COG0786	glutamate:sodium symporter activity
BJD94_RS19460	COG0786	glutamate:sodium symporter activity
BJD94_RS19470	COG0363	glucosamine-6-phosphate deaminase activity
BJD94_RS19505	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
BJD94_RS19510	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
BJD94_RS19515	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
BJD94_RS19535	COG1309	transcriptional regulator
BJD94_RS19555	COG3123	guanosine phosphorylase activity
BJD94_RS19560	COG1741	Belongs to the pirin family
BJD94_RS19570	COG5001	Diguanylate cyclase
BJD94_RS19575	COG3706	GGDEF domain
BJD94_RS19630	COG1982	Orn Lys Arg decarboxylase major
BJD94_RS19635	COG0531	amino acid
BJD94_RS19670	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
BJD94_RS19675	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
BJD94_RS19680	COG1162	GTPase activity
BJD94_RS19685	COG2847	Copper chaperone PCu(A)C
BJD94_RS19690	COG1999	signal sequence binding
BJD94_RS19720	COG0058	SHG alpha-glucan phosphorylase activity
BJD94_RS19725	COG1640	4-alpha-glucanotransferase
BJD94_RS19730	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
BJD94_RS19735	COG0840	transmembrane signaling receptor activity
BJD94_RS19740	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
BJD94_RS19800	COG1012	belongs to the aldehyde dehydrogenase family
BJD94_RS19805	COG0625	glutathione transferase activity
BJD94_RS19810	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
BJD94_RS19815	COG1283	sodium-dependent phosphate transmembrane transporter activity
BJD94_RS19820	COG0612	Peptidase, M16
BJD94_RS19830	COG0583	DNA-binding transcription factor activity
BJD94_RS19840	COG0642	Histidine kinase
BJD94_RS19855	COG1028	Short-chain dehydrogenase reductase Sdr
BJD94_RS19870	COG2199	diguanylate cyclase activity
BJD94_RS19890	COG1609	Transcriptional regulator
BJD94_RS19905	COG0395	ABC-type sugar transport system, permease component
BJD94_RS19910	COG2723	6-phospho-beta-galactosidase activity
BJD94_RS19920	COG1609	Transcriptional regulator
BJD94_RS19930	COG0747	negative chemotaxis
BJD94_RS19940	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
BJD94_RS19945	COG0444	Belongs to the ABC transporter superfamily
BJD94_RS19950	COG4608	Belongs to the ABC transporter superfamily
BJD94_RS19960	COG1609	Transcriptional regulator
BJD94_RS19975	COG4580	involved in the transport of maltose and maltodextrins
BJD94_RS19990	COG1472	Belongs to the glycosyl hydrolase 3 family
BJD94_RS19995	COG0534	Mate efflux family protein
BJD94_RS20005	COG1566	PFAM secretion protein HlyD family protein
BJD94_RS20035	COG0564	pseudouridine synthase activity
BJD94_RS20040	COG3706	GGDEF domain
BJD94_RS20060	COG1609	Transcriptional regulator
BJD94_RS20070	COG1129	ABC transporter
BJD94_RS20095	COG2211	Major facilitator Superfamily
BJD94_RS20105	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
BJD94_RS20110	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
BJD94_RS20115	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
BJD94_RS20120	COG2188	Transcriptional regulator
BJD94_RS20125	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_RS20125	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_RS20125	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_RS20130	COG0383	alpha-mannosidase activity
BJD94_RS20135	COG1929	Belongs to the glycerate kinase type-1 family
BJD94_RS20140	COG1482	cell wall glycoprotein biosynthetic process
BJD94_RS20190	COG1482	cell wall glycoprotein biosynthetic process
BJD94_RS20195	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_RS20195	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_RS20195	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_RS20200	COG2207	Transcriptional regulator
BJD94_RS20210	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_RS20215	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_RS20225	COG3537	Alpha-1,2-mannosidase
BJD94_RS20230	COG3537	Alpha-1,2-mannosidase
BJD94_RS20235	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_RS20240	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_RS20240	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_RS20240	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_RS20255	COG3383	formate dehydrogenase (NAD+) activity
BJD94_RS20265	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
BJD94_RS20305	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
BJD94_RS20325	COG0583	DNA-binding transcription factor activity
BJD94_RS20340	COG0137	argininosuccinate synthase activity
BJD94_RS20350	COG1301	dicarboxylic acid transport
BJD94_RS20395	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
BJD94_RS20400	COG2175	clavaminate synthase activity
BJD94_RS20435	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BJD94_RS20445	COG3706	GGDEF domain
BJD94_RS20460	COG2356	endonuclease I
BJD94_RS20475	COG1368	sulfuric ester hydrolase activity
BJD94_RS20480	COG2194	sulfuric ester hydrolase activity
BJD94_RS20485	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
BJD94_RS20490	COG2205	protein histidine kinase activity
BJD94_RS20495	COG0745	RESPONSE REGULATOR receiver
BJD94_RS20510	COG4221	oxidoreductase activity
BJD94_RS20535	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
BJD94_RS20540	COG0076	glutamate decarboxylase activity
BJD94_RS20545	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
BJD94_RS20555	COG0561	phosphatase activity
BJD94_RS20570	COG0671	phosphoesterase, PA-phosphatase related
BJD94_RS20575	COG0351	phosphomethylpyrimidine kinase
BJD94_RS20645	COG2814	Major facilitator Superfamily
BJD94_RS20660	COG0039	L-malate dehydrogenase activity
BJD94_RS20665	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
BJD94_RS20670	COG4771	TonB-dependent receptor
BJD94_RS20690	COG0393	Putative heavy-metal-binding
BJD94_RS20705	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
BJD94_RS20715	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
BJD94_RS20735	COG0753	catalase activity
BJD94_RS20755	COG0346	lactoylglutathione lyase activity
BJD94_RS20765	COG2211	Major facilitator Superfamily
BJD94_RS20780	COG3240	lipase activity
BJD94_RS20830	COG3040	lipid binding
BJD94_RS20880	COG3111	PFAM Bacterial OB fold (BOF) protein
BJD94_RS20890	COG2274	protein secretion by the type I secretion system
BJD94_RS20900	COG1538	Outer membrane efflux protein
BJD94_RS20920	COG0668	transmembrane transport
BJD94_RS20945	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BJD94_RS20950	COG4946	Tricorn protease homolog
BJD94_RS20950	COG0793	Belongs to the peptidase S41A family
BJD94_RS20965	COG1122	ATPase activity
BJD94_RS20970	COG4720	Psort location CytoplasmicMembrane, score
BJD94_RS20975	COG1566	PFAM secretion protein HlyD family protein
BJD94_RS21000	COG0813	purine-nucleoside phosphorylase activity
BJD94_RS21005	COG3272	Protein of unknown function (DUF1722)
BJD94_RS21010	COG0789	Transcriptional regulator
BJD94_RS21015	COG0415	Belongs to the DNA photolyase family
BJD94_RS21020	COG1388	LysM domain
BJD94_RS21020	COG1376	ErfK ybiS ycfS ynhG family protein
BJD94_RS21060	COG0513	Belongs to the DEAD box helicase family
BJD94_RS21110	COG0573	inorganic phosphate transmembrane transporter activity
BJD94_RS21115	COG0581	inorganic phosphate transmembrane transporter activity
BJD94_RS21120	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
BJD94_RS21125	COG5001	Diguanylate cyclase
BJD94_RS21125	COG4251	negative regulation of phosphorylation
BJD94_RS21125	COG2203	Gaf domain
BJD94_RS21125	COG3706	GGDEF domain
BJD94_RS21135	COG2304	oxidoreductase activity
BJD94_RS21155	COG0714	Associated with various cellular activities
BJD94_RS21225	COG1596	polysaccharide export
BJD94_RS21235	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
BJD94_RS21240	COG3842	ATPase activity
BJD94_RS21255	COG1175	transmembrane transport
BJD94_RS21260	COG3833	ABC-type maltose transport systems, permease component
BJD94_RS21290	COG2354	Protein conserved in bacteria
BJD94_RS21300	COG0418	dihydroorotase activity
BJD94_RS21305	COG0633	Ferredoxin
BJD94_RS21305	COG3217	Mosc domain protein beta barrel domain protein
BJD94_RS21305	COG0633	Ferredoxin
BJD94_RS21305	COG3217	Mosc domain protein beta barrel domain protein
BJD94_RS21310	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
BJD94_RS21355	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
BJD94_RS21360	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BJD94_RS21370	COG0848	biopolymer transport protein
BJD94_RS21375	COG0811	peptide transport
BJD94_RS21380	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
BJD94_RS21390	COG3721	Heme iron utilization protein
BJD94_RS21395	COG0748	coenzyme F420 binding
BJD94_RS21405	COG0835	chemotaxis
BJD94_RS21405	COG0784	Response regulator, receiver
BJD94_RS21410	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
BJD94_RS21425	COG0589	response to stress
BJD94_RS21430	COG0366	Alpha amylase catalytic
BJD94_RS21440	COG0840	transmembrane signaling receptor activity
BJD94_RS21455	COG3314	Sporulation integral membrane protein YlbJ
BJD94_RS21475	COG0739	heme binding
BJD94_RS21480	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
BJD94_RS21495	COG2084	Dehydrogenase
BJD94_RS21520	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
BJD94_RS21540	COG0840	transmembrane signaling receptor activity
BJD94_RS21555	COG3706	GGDEF domain
BJD94_RS21560	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD94_RS21560	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
BJD94_RS21565	COG1765	OsmC-like protein
BJD94_RS21590	COG1011	Hydrolase
BJD94_RS21615	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
BJD94_RS21620	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
BJD94_RS21620	COG2207	Transcriptional regulator
BJD94_RS21630	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
BJD94_RS21635	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
BJD94_RS21640	COG1840	ABC-type Fe3 transport system, periplasmic component
BJD94_RS21645	COG3842	ATPase activity
BJD94_RS21665	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD94_RS21670	COG0583	DNA-binding transcription factor activity
BJD94_RS21680	COG3104	oligopeptide transport
BJD94_RS21685	COG1760	l-serine dehydratase
BJD94_RS21705	COG1686	Belongs to the peptidase S11 family
BJD94_RS21725	COG1309	transcriptional regulator
BJD94_RS21730	COG1012	belongs to the aldehyde dehydrogenase family
BJD94_RS21750	COG4175	Glycine betaine
BJD94_RS21755	COG3059	membrane
BJD94_RS21765	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
BJD94_RS21785	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
BJD94_RS21790	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
BJD94_RS21795	COG0247	lactate metabolic process
BJD94_RS21810	COG1619	proteins homologs of microcin C7 resistance protein MccF
BJD94_RS21815	COG2133	pyrroloquinoline quinone binding
BJD94_RS21825	COG1454	alcohol dehydrogenase
BJD94_RS21830	COG0443	Heat shock 70 kDa protein
BJD94_RS21835	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
BJD94_RS21865	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
BJD94_RS21870	COG3174	membrane
BJD94_RS21895	COG0814	amino acid
BJD94_RS21900	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
BJD94_RS21925	COG2962	Rard protein
BJD94_RS21940	COG0671	phosphoesterase, PA-phosphatase related
BJD94_RS21950	COG1288	antiporter activity
BJD94_RS21965	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
BJD94_RS21980	COG2425	protein containing a von Willebrand factor type A (vWA) domain
BJD94_RS21985	COG2315	Protein conserved in bacteria
BJD94_RS22000	COG1869	D-ribose catabolic process
BJD94_RS22005	COG1129	ABC transporter
BJD94_RS22010	COG1172	Belongs to the binding-protein-dependent transport system permease family
BJD94_RS22015	COG1879	ABC-type sugar transport system periplasmic component
BJD94_RS22020	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD94_RS22025	COG1609	Transcriptional regulator
BJD94_RS22035	COG0835	chemotaxis
BJD94_RS22035	COG0784	Response regulator, receiver
BJD94_RS22045	COG0456	acetyltransferase
BJD94_RS22050	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
BJD94_RS22065	COG0420	3'-5' exonuclease activity
BJD94_RS22070	COG0419	ATPase involved in DNA repair
BJD94_RS22080	COG0583	DNA-binding transcription factor activity
BJD94_RS22100	COG4964	Belongs to the GSP D family
BJD94_RS22190	COG3290	protein histidine kinase activity
BJD94_RS22200	COG0110	maltose O-acetyltransferase activity
BJD94_RS22220	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
BJD94_RS22225	COG4605	iron ion homeostasis
BJD94_RS22230	COG4604	ABC transporter, ATP-binding protein
BJD94_RS22235	COG0789	Transcriptional regulator
BJD94_RS22265	COG1289	transmembrane transporter activity
BJD94_RS22270	COG0210	DNA helicase
BJD94_RS22275	COG1803	Methylglyoxal synthase
BJD94_RS22280	COG1879	ABC-type sugar transport system periplasmic component
BJD94_RS22305	COG1262	PFAM Formylglycine-generating sulfatase enzyme
BJD94_RS22310	COG3005	denitrification pathway
BJD94_RS22335	COG0513	Belongs to the DEAD box helicase family
BJD94_RS22345	COG5001	Diguanylate cyclase
BJD94_RS22345	COG1716	ATPase activity
BJD94_RS22370	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
BJD94_RS22385	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
BJD94_RS22390	COG0513	Belongs to the DEAD box helicase family
BJD94_RS22395	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
BJD94_RS22405	COG2814	Major facilitator Superfamily
BJD94_RS22410	COG0583	DNA-binding transcription factor activity
BJD94_RS22415	COG1902	pentaerythritol trinitrate reductase activity
BJD94_RS22420	COG1902	pentaerythritol trinitrate reductase activity
BJD94_RS22425	COG0604	alcohol dehydrogenase
BJD94_RS22430	COG3119	arylsulfatase activity
BJD94_RS22445	COG0641	radical SAM
BJD94_RS22450	COG0714	Associated with various cellular activities
BJD94_RS22485	COG1524	type I phosphodiesterase nucleotide pyrophosphatase
BJD94_RS22495	COG0641	radical SAM
BJD94_RS22525	COG2814	Major facilitator Superfamily
BJD94_RS22550	COG0583	DNA-binding transcription factor activity
BJD94_RS22555	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
BJD94_RS22570	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
BJD94_RS22580	COG1132	(ABC) transporter
BJD94_RS22595	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD94_RS22595	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
BJD94_RS22600	COG0509	glycine decarboxylation via glycine cleavage system
BJD94_RS22605	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
BJD94_RS22650	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_RS22650	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
BJD94_RS22650	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
BJD94_RS22655	COG1105	Belongs to the carbohydrate kinase PfkB family
BJD94_RS22660	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_RS22660	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
BJD94_RS22665	COG1609	Transcriptional regulator
BJD94_RS22690	COG0469	pyruvate kinase activity
BJD94_RS22695	COG2271	Major facilitator Superfamily
BJD94_RS22705	COG4191	Histidine kinase
BJD94_RS22715	COG1979	alcohol dehydrogenase
BJD94_RS22720	COG2207	Transcriptional regulator
BJD94_RS22730	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
BJD94_RS22735	COG2759	Belongs to the formate--tetrahydrofolate ligase family
BJD94_RS22740	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
BJD94_RS22755	COG0784	Response regulator, receiver
BJD94_RS22755	COG3437	response regulator, receiver
BJD94_RS22760	COG0546	phosphoglycolate phosphatase activity
BJD94_RS22780	COG0513	Belongs to the DEAD box helicase family
BJD94_RS22795	COG3038	cytochrome b561
BJD94_RS22800	COG2353	YceI-like domain
BJD94_RS22805	COG2116	formate transmembrane transporter activity
BJD94_RS22810	COG0583	DNA-binding transcription factor activity
BJD94_RS22820	COG3593	DNA synthesis involved in DNA repair
BJD94_RS22825	COG0737	Belongs to the 5'-nucleotidase family
BJD94_RS22830	COG0861	Integral membrane protein TerC family
BJD94_RS22860	COG2267	carboxylic ester hydrolase activity
BJD94_RS22865	COG2067	long-chain fatty acid transport protein
BJD94_RS22880	COG2050	protein possibly involved in aromatic compounds catabolism
BJD94_RS22890	COG4533	DNA binding
BJD94_RS22900	COG0366	Alpha amylase catalytic
BJD94_RS22905	COG0583	DNA-binding transcription factor activity
BJD94_RS22925	COG0484	heat shock protein binding
BJD94_RS22940	COG1716	ATPase activity
BJD94_RS22940	COG5001	Diguanylate cyclase
BJD94_RS22945	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
BJD94_RS22955	COG4181	ATPase activity
BJD94_RS22960	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
BJD94_RS22965	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
BJD94_RS22965	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
BJD94_RS22970	COG1984	allophanate hydrolase subunit 2
BJD94_RS22975	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
BJD94_RS22980	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
BJD94_RS22990	COG3447	MASE1 domain protein
BJD94_RS22990	COG5001	Diguanylate cyclase
BJD94_RS22990	COG5002	protein histidine kinase activity
BJD94_RS23000	COG0583	DNA-binding transcription factor activity
BJD94_RS23005	COG1042	CoA-binding domain protein
BJD94_RS23005	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
BJD94_RS23005	COG0045	succinate-CoA ligase (ADP-forming) activity
BJD94_RS23015	COG1181	Belongs to the D-alanine--D-alanine ligase family
BJD94_RS23025	COG0023	Translation Initiation Factor
BJD94_RS23035	COG3140	Belongs to the UPF0181 family
BJD94_RS23050	COG0745	RESPONSE REGULATOR receiver
BJD94_RS23060	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
BJD94_RS23065	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
BJD94_RS23080	COG3706	GGDEF domain
BJD94_RS23090	COG2199	diguanylate cyclase activity
BJD94_RS23100	COG1846	Transcriptional regulator
BJD94_RS23105	COG0697	spore germination
BJD94_RS23115	COG4149	molybdate abc transporter
BJD94_RS23120	COG0725	ABC transporter, periplasmic molybdate-binding protein
BJD94_RS23140	COG4067	protein conserved in archaea
BJD94_RS23140	COG0189	ligase activity
BJD94_RS23150	COG0602	queuosine metabolic process
BJD94_RS23155	COG1328	CTP reductase activity
BJD94_RS23210	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
BJD94_RS23215	COG3118	belongs to the thioredoxin family
BJD94_RS23230	COG0534	Mate efflux family protein
BJD94_RS23250	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
BJD94_RS23265	COG0848	biopolymer transport protein
BJD94_RS23270	COG0811	peptide transport
BJD94_RS23275	COG0811	peptide transport
BJD94_RS23310	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
BJD94_RS23315	COG0840	transmembrane signaling receptor activity
BJD94_RS23345	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
BJD94_RS23355	COG5001	Diguanylate cyclase
BJD94_RS23355	COG4251	negative regulation of phosphorylation
BJD94_RS23355	COG2203	Gaf domain
BJD94_RS23355	COG3706	GGDEF domain
BJD94_RS23365	COG0010	Belongs to the arginase family
BJD94_RS23370	COG0513	Belongs to the DEAD box helicase family
BJD94_RS23380	COG0523	cobalamin synthesis protein