locus-tag class description WS08_RS00005 PF00468 Ribosomal protein L34 WS08_RS00010 PF00308 Bacterial dnaA protein WS08_RS00010 PF08299 Bacterial dnaA protein helix-turn-helix WS08_RS00010 PF11638 DnaA N-terminal domain WS08_RS00015 PF00712 DNA polymerase III beta subunit, N-terminal domain WS08_RS00015 PF02767 DNA polymerase III beta subunit, central domain WS08_RS00015 PF02768 DNA polymerase III beta subunit, C-terminal domain WS08_RS00025 PF02463 RecF/RecN/SMC N terminal domain WS08_RS00030 PF00986 DNA gyrase B subunit, carboxyl terminus WS08_RS00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_RS00030 PF01751 Toprim domain WS08_RS00030 PF00204 DNA gyrase B WS08_RS00035 PF00521 DNA gyrase/topoisomerase IV, subunit A WS08_RS00035 PF03989 DNA gyrase C-terminal domain, beta-propeller WS08_RS00040 PF00884 Sulfatase WS08_RS00045 PF00368 Hydroxymethylglutaryl-coenzyme A reductase WS08_RS00115 PF01418 Helix-turn-helix domain, rpiR family WS08_RS00115 PF01380 SIS domain WS08_RS00120 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain WS08_RS00120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase WS08_RS00140 PF01479 S4 domain WS08_RS00140 PF00579 tRNA synthetases class I (W and Y) WS08_RS00145 PF00860 Permease family WS08_RS00155 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain WS08_RS00155 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase WS08_RS00200 PF00860 Permease family WS08_RS00210 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) WS08_RS00210 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 WS08_RS00220 PF02772 S-adenosylmethionine synthetase, central domain WS08_RS00220 PF00438 S-adenosylmethionine synthetase, N-terminal domain WS08_RS00220 PF02773 S-adenosylmethionine synthetase, C-terminal domain WS08_RS00225 PF01938 TRAM domain WS08_RS00225 PF05958 tRNA (Uracil-5-)-methyltransferase WS08_RS00230 PF03352 Methyladenine glycosylase WS08_RS00240 PF09334 tRNA synthetases class I (M) WS08_RS00240 PF00133 tRNA synthetases class I (I, L, M and V) WS08_RS00240 PF08264 Anticodon-binding domain of tRNA WS08_RS00240 PF13603 Leucyl-tRNA synthetase, Domain 2 WS08_RS00250 PF01943 Polysaccharide biosynthesis protein WS08_RS00250 PF14667 Polysaccharide biosynthesis C-terminal domain WS08_RS00260 PF13520 Amino acid permease WS08_RS00270 PF12705 PD-(D/E)XK nuclease superfamily WS08_RS00275 PF12705 PD-(D/E)XK nuclease superfamily WS08_RS00275 PF00580 UvrD/REP helicase N-terminal domain WS08_RS00275 PF13361 UvrD-like helicase C-terminal domain WS08_RS00280 PF00107 Zinc-binding dehydrogenase WS08_RS00280 PF08240 Alcohol dehydrogenase GroES-like domain WS08_RS00290 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain WS08_RS00290 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain WS08_RS00295 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WS08_RS00295 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WS08_RS00300 PF00156 Phosphoribosyl transferase domain WS08_RS00300 PF09182 Bacterial purine repressor, N-terminal WS08_RS00305 PF12804 MobA-like NTP transferase domain WS08_RS00305 PF00132 Bacterial transferase hexapeptide (six repeats) WS08_RS00310 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WS08_RS00310 PF14572 Phosphoribosyl synthetase-associated domain WS08_RS00315 PF06335 Protein of unknown function (DUF1054) WS08_RS00320 PF01250 Ribosomal protein S6 WS08_RS00325 PF00436 Single-strand binding protein family WS08_RS00330 PF01084 Ribosomal protein S18 WS08_RS00345 PF00072 Response regulator receiver domain WS08_RS00345 PF00486 Transcriptional regulatory protein, C terminal WS08_RS00350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_RS00350 PF00672 HAMP domain WS08_RS00350 PF00512 His Kinase A (phospho-acceptor) domain WS08_RS00350 PF00989 PAS fold WS08_RS00365 PF00753 Metallo-beta-lactamase superfamily WS08_RS00370 PF13180 PDZ domain WS08_RS00380 PF01966 HD domain WS08_RS00390 PF05066 HB1, ASXL, restriction endonuclease HTH domain WS08_RS00395 PF06418 CTP synthase N-terminus WS08_RS00395 PF00117 Glutamine amidotransferase class-I WS08_RS00400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WS08_RS00405 PF00271 Helicase conserved C-terminal domain WS08_RS00405 PF00270 DEAD/DEAH box helicase WS08_RS00410 PF01648 4'-phosphopantetheinyl transferase superfamily WS08_RS00415 PF00842 Alanine racemase, C-terminal domain WS08_RS00415 PF01168 Alanine racemase, N-terminal domain WS08_RS00420 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system WS08_RS00425 PF13538 UvrD-like helicase C-terminal domain WS08_RS00430 PF00579 tRNA synthetases class I (W and Y) WS08_RS00435 PF02541 Ppx/GppA phosphatase family WS08_RS00450 PF01546 Peptidase family M20/M25/M40 WS08_RS00460 PF00625 Guanylate kinase WS08_RS00475 PF00005 ABC transporter WS08_RS00480 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS08_RS00485 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS00490 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS00495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS08_RS00500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS08_RS00505 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS00510 PF12911 N-terminal TM domain of oligopeptide transport permease C WS08_RS00510 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS00515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WS08_RS00515 PF00005 ABC transporter WS08_RS00520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WS08_RS00520 PF00005 ABC transporter WS08_RS00525 PF01368 DHH family WS08_RS00525 PF02272 DHHA1 domain WS08_RS00530 PF01281 Ribosomal protein L9, N-terminal domain WS08_RS00530 PF03948 Ribosomal protein L9, C-terminal domain WS08_RS00535 PF03796 DnaB-like helicase C terminal domain WS08_RS00535 PF00772 DnaB-like helicase N terminal domain WS08_RS00540 PF07690 Major Facilitator Superfamily WS08_RS00555 PF00288 GHMP kinases N terminal domain WS08_RS00555 PF08544 GHMP kinases C terminal WS08_RS00565 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS08_RS00570 PF00300 Histidine phosphatase superfamily (branch 1) WS08_RS00575 PF00005 ABC transporter WS08_RS00575 PF01476 LysM domain WS08_RS00590 PF09335 SNARE associated Golgi protein WS08_RS00600 PF01566 Natural resistance-associated macrophage protein WS08_RS00605 PF01225 Mur ligase family, catalytic domain WS08_RS00605 PF08245 Mur ligase middle domain WS08_RS00605 PF02875 Mur ligase family, glutamate ligase domain WS08_RS00620 PF01098 Cell cycle protein WS08_RS00625 PF03807 NADP oxidoreductase coenzyme F420-dependent WS08_RS00625 PF14748 Pyrroline-5-carboxylate reductase dimerisation WS08_RS00640 PF12704 MacB-like periplasmic core domain WS08_RS00640 PF00005 ABC transporter WS08_RS00640 PF02687 FtsX-like permease family WS08_RS00645 PF01979 Amidohydrolase family WS08_RS00650 PF07702 UTRA domain WS08_RS00650 PF00392 Bacterial regulatory proteins, gntR family WS08_RS00655 PF00163 Ribosomal protein S4/S9 N-terminal domain WS08_RS00655 PF01479 S4 domain WS08_RS00660 PF06160 Septation ring formation regulator, EzrA WS08_RS00670 PF00860 Permease family WS08_RS00675 PF00709 Adenylosuccinate synthetase WS08_RS00680 PF00156 Phosphoribosyl transferase domain WS08_RS00705 PF01255 Putative undecaprenyl diphosphate synthase WS08_RS00715 PF02163 Peptidase family M50 WS08_RS00715 PF17820 PDZ domain WS08_RS00720 PF03129 Anticodon binding domain WS08_RS00720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS08_RS00720 PF04073 Aminoacyl-tRNA editing domain WS08_RS00725 PF00929 Exonuclease WS08_RS00725 PF02811 PHP domain WS08_RS00725 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WS08_RS00725 PF07733 Bacterial DNA polymerase III alpha NTPase domain WS08_RS00725 PF11490 DNA polymerase III polC-type N-terminus II WS08_RS00725 PF14480 DNA polymerase III polC-type N-terminus I WS08_RS00725 PF14579 Helix-hairpin-helix motif WS08_RS00730 PF08032 RNA 2'-O ribose methyltransferase substrate binding WS08_RS00730 PF00588 SpoU rRNA Methylase family WS08_RS00765 PF04851 Type III restriction enzyme, res subunit WS08_RS00765 PF00271 Helicase conserved C-terminal domain WS08_RS00775 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein WS08_RS00775 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus WS08_RS00780 PF00689 Cation transporting ATPase, C-terminus WS08_RS00780 PF00690 Cation transporter/ATPase, N-terminus WS08_RS00790 PF16921 Tex protein YqgF-like domain WS08_RS00790 PF09371 Tex-like protein N-terminal domain WS08_RS00790 PF00575 S1 RNA binding domain WS08_RS00790 PF17674 HHH domain WS08_RS00830 PF00013 KH domain WS08_RS00830 PF12072 Domain of unknown function (DUF3552) WS08_RS00830 PF01966 HD domain WS08_RS00845 PF00478 IMP dehydrogenase / GMP reductase domain WS08_RS00855 PF00145 C-5 cytosine-specific DNA methylase WS08_RS00860 PF09561 HpaII restriction endonuclease WS08_RS00930 PF00990 Diguanylate cyclase, GGDEF domain WS08_RS00935 PF00258 Flavodoxin WS08_RS00940 PF00990 Diguanylate cyclase, GGDEF domain WS08_RS00955 PF03358 NADPH-dependent FMN reductase WS08_RS00960 PF00294 pfkB family carbohydrate kinase WS08_RS00960 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) WS08_RS00965 PF05025 RbsD / FucU transport protein family WS08_RS00970 PF06800 Sugar transport protein WS08_RS00975 PF00893 Small Multidrug Resistance protein WS08_RS00980 PF00924 Mechanosensitive ion channel WS08_RS00985 PF06800 Sugar transport protein WS08_RS00990 PF00342 Phosphoglucose isomerase WS08_RS00995 PF09285 Elongation factor P, C-terminal WS08_RS00995 PF08207 Elongation factor P (EF-P) KOW-like domain WS08_RS00995 PF01132 Elongation factor P (EF-P) OB domain WS08_RS01000 PF03780 Asp23 family, cell envelope-related function WS08_RS01005 PF01029 NusB family WS08_RS01010 PF05198 Translation initiation factor IF-3, N-terminal domain WS08_RS01010 PF00707 Translation initiation factor IF-3, C-terminal domain WS08_RS01015 PF01632 Ribosomal protein L35 WS08_RS01020 PF00453 Ribosomal protein L20 WS08_RS01030 PF00164 Ribosomal protein S12/S23 WS08_RS01035 PF00177 Ribosomal protein S7p/S5e WS08_RS01040 PF00009 Elongation factor Tu GTP binding domain WS08_RS01040 PF03764 Elongation factor G, domain IV WS08_RS01040 PF14492 Elongation Factor G, domain II WS08_RS01040 PF00679 Elongation factor G C-terminus WS08_RS01040 PF03144 Elongation factor Tu domain 2 WS08_RS01045 PF02894 Oxidoreductase family, C-terminal alpha/beta domain WS08_RS01045 PF01408 Oxidoreductase family, NAD-binding Rossmann fold WS08_RS01050 PF08402 TOBE domain WS08_RS01050 PF00005 ABC transporter WS08_RS01055 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS01060 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS01065 PF13416 Bacterial extracellular solute-binding protein WS08_RS01070 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WS08_RS01075 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV WS08_RS01080 PF07475 HPr Serine kinase C-terminal domain WS08_RS01080 PF02603 HPr Serine kinase N terminus WS08_RS01085 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WS08_RS01085 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WS08_RS01090 PF00483 Nucleotidyl transferase WS08_RS01095 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS08_RS01100 PF00381 PTS HPr component phosphorylation site WS08_RS01105 PF05524 PEP-utilising enzyme, N-terminal WS08_RS01105 PF00391 PEP-utilising enzyme, mobile domain WS08_RS01105 PF02896 PEP-utilising enzyme, TIM barrel domain WS08_RS01110 PF00121 Triosephosphate isomerase WS08_RS01115 PF03952 Enolase, N-terminal domain WS08_RS01115 PF00113 Enolase, C-terminal TIM barrel domain WS08_RS01125 PF17876 Cold shock domain WS08_RS01125 PF00773 RNB domain WS08_RS01125 PF00575 S1 RNA binding domain WS08_RS01125 PF08206 Ribonuclease B OB domain WS08_RS01130 PF01668 SmpB protein WS08_RS01135 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS01140 PF00005 ABC transporter WS08_RS01145 PF03167 Uracil DNA glycosylase superfamily WS08_RS01150 PF01515 Phosphate acetyl/butaryl transferase WS08_RS01155 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE WS08_RS01165 PF07733 Bacterial DNA polymerase III alpha NTPase domain WS08_RS01165 PF11490 DNA polymerase III polC-type N-terminus II WS08_RS01165 PF00929 Exonuclease WS08_RS01165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WS08_RS01165 PF14480 DNA polymerase III polC-type N-terminus I WS08_RS01165 PF02811 PHP domain WS08_RS01165 PF14579 Helix-hairpin-helix motif WS08_RS01170 PF01565 FAD binding domain WS08_RS01170 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WS08_RS01175 PF02457 DisA bacterial checkpoint controller nucleotide-binding WS08_RS01185 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WS08_RS01185 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WS08_RS01185 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WS08_RS01185 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WS08_RS01195 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WS08_RS01195 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WS08_RS01200 PF01979 Amidohydrolase family WS08_RS01205 PF00117 Glutamine amidotransferase class-I WS08_RS01205 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WS08_RS01210 PF02142 MGS-like domain WS08_RS01210 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WS08_RS01210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS08_RS01215 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WS08_RS01220 PF00156 Phosphoribosyl transferase domain WS08_RS01225 PF00534 Glycosyl transferases group 1 WS08_RS01225 PF13439 Glycosyltransferase Family 4 WS08_RS01230 PF00534 Glycosyl transferases group 1 WS08_RS01230 PF13439 Glycosyltransferase Family 4 WS08_RS01240 PF00884 Sulfatase WS08_RS01260 PF08264 Anticodon-binding domain of tRNA WS08_RS01260 PF09334 tRNA synthetases class I (M) WS08_RS01260 PF01588 Putative tRNA binding domain WS08_RS01265 PF00999 Sodium/hydrogen exchanger family WS08_RS01270 PF01026 TatD related DNase WS08_RS01275 PF01751 Toprim domain WS08_RS01275 PF13331 Domain of unknown function (DUF4093) WS08_RS01280 PF00398 Ribosomal RNA adenine dimethylase WS08_RS01285 PF00571 CBS domain WS08_RS01285 PF01595 Cyclin M transmembrane N-terminal domain WS08_RS01285 PF03471 Transporter associated domain WS08_RS01290 PF06257 Biofilm formation stimulator VEG WS08_RS01295 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WS08_RS01300 PF00303 Thymidylate synthase WS08_RS01305 PF03816 Cell envelope-related transcriptional attenuator domain WS08_RS01310 PF04024 PspC domain WS08_RS01315 PF02673 Bacitracin resistance protein BacA WS08_RS01320 PF03631 Virulence factor BrkB WS08_RS01335 PF01195 Peptidyl-tRNA hydrolase WS08_RS01340 PF00270 DEAD/DEAH box helicase WS08_RS01340 PF02559 CarD-like/TRCF domain WS08_RS01340 PF17757 UvrB interaction domain WS08_RS01340 PF00271 Helicase conserved C-terminal domain WS08_RS01340 PF03461 TRCF domain WS08_RS01345 PF14667 Polysaccharide biosynthesis C-terminal domain WS08_RS01345 PF01943 Polysaccharide biosynthesis protein WS08_RS01350 PF01479 S4 domain WS08_RS01360 PF01171 PP-loop family WS08_RS01365 PF00156 Phosphoribosyl transferase domain WS08_RS01370 PF00004 ATPase family associated with various cellular activities (AAA) WS08_RS01370 PF17862 AAA+ lid domain WS08_RS01370 PF06480 FtsH Extracellular WS08_RS01370 PF01434 Peptidase family M41 WS08_RS01375 PF01430 Hsp33 protein WS08_RS01380 PF01336 OB-fold nucleic acid binding domain WS08_RS01380 PF00152 tRNA synthetases class II (D, K and N) WS08_RS01515 PF01654 Cytochrome bd terminal oxidase subunit I WS08_RS01520 PF02322 Cytochrome bd terminal oxidase subunit II WS08_RS01525 PF00005 ABC transporter WS08_RS01525 PF00664 ABC transporter transmembrane region WS08_RS01530 PF00664 ABC transporter transmembrane region WS08_RS01530 PF00005 ABC transporter WS08_RS01535 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase WS08_RS01535 PF13457 GW (Gly-Tryp) dipeptide domain WS08_RS01545 PF02222 ATP-grasp domain WS08_RS01560 PF00313 'Cold-shock' DNA-binding domain WS08_RS01565 PF00293 NUDIX domain WS08_RS01575 PF01048 Phosphorylase superfamily WS08_RS01595 PF07972 NrdI Flavodoxin like WS08_RS01600 PF00462 Glutaredoxin WS08_RS01605 PF00317 Ribonucleotide reductase, all-alpha domain WS08_RS01605 PF02867 Ribonucleotide reductase, barrel domain WS08_RS01605 PF08343 Ribonucleotide reductase N-terminal WS08_RS01610 PF00268 Ribonucleotide reductase, small chain WS08_RS01620 PF02653 Branched-chain amino acid transport system / permease component WS08_RS01625 PF00005 ABC transporter WS08_RS01630 PF02537 CrcB-like protein, Camphor Resistance (CrcB) WS08_RS01645 PF04002 RadC-like JAB domain WS08_RS01655 PF04085 rod shape-determining protein MreC WS08_RS01670 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS01675 PF00005 ABC transporter WS08_RS01680 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS08_RS01685 PF01268 Formate--tetrahydrofolate ligase WS08_RS01710 PF00324 Amino acid permease WS08_RS01715 PF00391 PEP-utilising enzyme, mobile domain WS08_RS01715 PF00224 Pyruvate kinase, barrel domain WS08_RS01715 PF02887 Pyruvate kinase, alpha/beta domain WS08_RS01725 PF04452 RNA methyltransferase WS08_RS01730 PF02381 MraZ protein, putative antitoxin-like WS08_RS01735 PF01795 MraW methylase family WS08_RS01745 PF03717 Penicillin-binding Protein dimerisation domain WS08_RS01745 PF03793 PASTA domain WS08_RS01745 PF00905 Penicillin binding protein transpeptidase domain WS08_RS01750 PF00953 Glycosyl transferase family 4 WS08_RS01750 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 WS08_RS01755 PF08245 Mur ligase middle domain WS08_RS01755 PF02875 Mur ligase family, glutamate ligase domain WS08_RS01760 PF04101 Glycosyltransferase family 28 C-terminal domain WS08_RS01760 PF03033 Glycosyltransferase family 28 N-terminal domain WS08_RS01765 PF03799 Cell division protein FtsQ WS08_RS01765 PF08478 POTRA domain, FtsQ-type WS08_RS01770 PF02491 SHS2 domain inserted in FTSA WS08_RS01770 PF11983 Membrane-attachment and polymerisation-promoting switch WS08_RS01775 PF12327 FtsZ family, C-terminal domain WS08_RS01775 PF00091 Tubulin/FtsZ family, GTPase domain WS08_RS01780 PF04472 Cell division protein SepF WS08_RS01785 PF02325 YGGT family WS08_RS01790 PF17774 Putative RNA-binding domain in YlmH WS08_RS01790 PF01479 S4 domain WS08_RS01795 PF05103 DivIVA protein WS08_RS01800 PF06827 Zinc finger found in FPG and IleRS WS08_RS01800 PF00133 tRNA synthetases class I (I, L, M and V) WS08_RS01800 PF08264 Anticodon-binding domain of tRNA WS08_RS01805 PF00300 Histidine phosphatase superfamily (branch 1) WS08_RS01815 PF14490 Helix-hairpin-helix containing domain WS08_RS01815 PF13538 UvrD-like helicase C-terminal domain WS08_RS01815 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain WS08_RS01820 PF01709 Transcriptional regulator WS08_RS01825 PF00437 Type II/IV secretion system protein WS08_RS01830 PF00482 Type II secretion system (T2SS), protein F WS08_RS01835 PF07963 Prokaryotic N-terminal methylation motif WS08_RS01860 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WS08_RS01860 PF18074 Primosomal protein N C-terminal domain WS08_RS01860 PF17764 3′ DNA-binding domain (3′BD) WS08_RS01860 PF00271 Helicase conserved C-terminal domain WS08_RS01860 PF04851 Type III restriction enzyme, res subunit WS08_RS01865 PF00551 Formyl transferase WS08_RS01865 PF02911 Formyl transferase, C-terminal domain WS08_RS01870 PF01189 16S rRNA methyltransferase RsmB/F WS08_RS01870 PF01029 NusB family WS08_RS01880 PF03793 PASTA domain WS08_RS01880 PF00069 Protein kinase domain WS08_RS01885 PF03193 RsgA GTPase WS08_RS01885 PF16745 RsgA N-terminal domain WS08_RS01890 PF00834 Ribulose-phosphate 3 epimerase family WS08_RS01900 PF00830 Ribosomal L28 family WS08_RS01905 PF03780 Asp23 family, cell envelope-related function WS08_RS01910 PF13684 Dihydroxyacetone kinase family WS08_RS01910 PF02734 DAK2 domain WS08_RS01915 PF17191 RecG wedge domain WS08_RS01915 PF00271 Helicase conserved C-terminal domain WS08_RS01915 PF00270 DEAD/DEAH box helicase WS08_RS01920 PF02504 Fatty acid synthesis protein WS08_RS01925 PF00550 Phosphopantetheine attachment site WS08_RS01930 PF00035 Double-stranded RNA binding motif WS08_RS01930 PF14622 Ribonuclease-III-like WS08_RS01935 PF02463 RecF/RecN/SMC N terminal domain WS08_RS01935 PF06470 SMC proteins Flexible Hinge Domain WS08_RS01940 PF02881 SRP54-type protein, helical bundle domain WS08_RS01940 PF00448 SRP54-type protein, GTPase domain WS08_RS01945 PF04297 Putative helix-turn-helix protein, YlxM / p13 like WS08_RS01950 PF02881 SRP54-type protein, helical bundle domain WS08_RS01950 PF00448 SRP54-type protein, GTPase domain WS08_RS01950 PF02978 Signal peptide binding domain WS08_RS01955 PF00886 Ribosomal protein S16 WS08_RS01960 PF05239 PRC-barrel domain WS08_RS01960 PF01782 RimM N-terminal domain WS08_RS01965 PF01746 tRNA (Guanine-1)-methyltransferase WS08_RS01970 PF01245 Ribosomal protein L19 WS08_RS01975 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 WS08_RS01975 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) WS08_RS01980 PF01361 Tautomerase enzyme WS08_RS01985 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WS08_RS01985 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WS08_RS01990 PF00293 NUDIX domain WS08_RS01995 PF01712 Deoxynucleoside kinase WS08_RS02000 PF01741 Large-conductance mechanosensitive channel, MscL WS08_RS02025 PF06146 Phosphate-starvation-inducible E WS08_RS02030 PF05389 Negative regulator of genetic competence (MecA) WS08_RS02035 PF01432 Peptidase family M3 WS08_RS02035 PF08439 Oligopeptidase F WS08_RS02050 PF00557 Metallopeptidase family M24 WS08_RS02050 PF01321 Creatinase/Prolidase N-terminal domain WS08_RS02055 PF00356 Bacterial regulatory proteins, lacI family WS08_RS02100 PF04127 DNA / pantothenate metabolism flavoprotein WS08_RS02100 PF02441 Flavoprotein WS08_RS02105 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal WS08_RS02105 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal WS08_RS02115 PF01520 N-acetylmuramoyl-L-alanine amidase WS08_RS02115 PF05036 Sporulation related domain WS08_RS02120 PF03129 Anticodon binding domain WS08_RS02120 PF13393 Histidyl-tRNA synthetase WS08_RS02125 PF02938 GAD domain WS08_RS02125 PF01336 OB-fold nucleic acid binding domain WS08_RS02125 PF00152 tRNA synthetases class II (D, K and N) WS08_RS02130 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) WS08_RS02130 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 WS08_RS02135 PF01165 Ribosomal protein S21 WS08_RS02140 PF09424 Yqey-like protein WS08_RS02145 PF02130 Uncharacterized protein family UPF0054 WS08_RS02150 PF01219 Prokaryotic diacylglycerol kinase WS08_RS02155 PF07650 KH domain WS08_RS02155 PF01926 50S ribosome-binding GTPase WS08_RS02160 PF02565 Recombination protein O C terminal WS08_RS02160 PF11967 Recombination protein O N terminal WS08_RS02165 PF02091 Glycyl-tRNA synthetase alpha subunit WS08_RS02170 PF02092 Glycyl-tRNA synthetase beta subunit WS08_RS02180 PF01116 Fructose-bisphosphate aldolase class-II WS08_RS02185 PF00230 Major intrinsic protein WS08_RS02190 PF02652 L-lactate permease WS08_RS02195 PF03741 Integral membrane protein TerC family WS08_RS02200 PF10282 Lactonase, 7-bladed beta-propeller WS08_RS02205 PF00588 SpoU rRNA Methylase family WS08_RS02210 PF01580 FtsK/SpoIIIE family WS08_RS02210 PF09397 Ftsk gamma domain WS08_RS02210 PF17854 FtsK alpha domain WS08_RS02215 PF00005 ABC transporter WS08_RS02215 PF13732 Domain of unknown function (DUF4162) WS08_RS02225 PF03009 Glycerophosphoryl diester phosphodiesterase family WS08_RS02230 PF01541 GIY-YIG catalytic domain WS08_RS02230 PF02151 UvrB/uvrC motif WS08_RS02230 PF08459 UvrC Helix-hairpin-helix N-terminal WS08_RS02235 PF01926 50S ribosome-binding GTPase WS08_RS02235 PF09269 Domain of unknown function (DUF1967) WS08_RS02235 PF01018 GTP1/OBG WS08_RS02245 PF01205 Uncharacterized protein family UPF0029 WS08_RS02245 PF09186 Domain of unknown function (DUF1949) WS08_RS02250 PF07690 Major Facilitator Superfamily WS08_RS02255 PF00478 IMP dehydrogenase / GMP reductase domain WS08_RS02255 PF00571 CBS domain WS08_RS02260 PF01330 RuvA N terminal domain WS08_RS02260 PF07499 RuvA, C-terminal domain WS08_RS02265 PF17864 RuvB AAA lid domain WS08_RS02265 PF05496 Holliday junction DNA helicase RuvB P-loop domain WS08_RS02265 PF05491 RuvB C-terminal winged helix domain WS08_RS02305 PF02699 Preprotein translocase subunit WS08_RS02310 PF11799 impB/mucB/samB family C-terminal domain WS08_RS02310 PF00817 impB/mucB/samB family WS08_RS02315 PF02272 DHHA1 domain WS08_RS02315 PF01368 DHH family WS08_RS02320 PF00270 DEAD/DEAH box helicase WS08_RS02320 PF00271 Helicase conserved C-terminal domain WS08_RS02325 PF00132 Bacterial transferase hexapeptide (six repeats) WS08_RS02325 PF12464 Maltose acetyltransferase WS08_RS02330 PF01411 tRNA synthetases class II (A) WS08_RS02330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WS08_RS02330 PF02272 DHHA1 domain WS08_RS02335 PF06135 IreB regulatory phosphoprotein WS08_RS02340 PF03652 Holliday junction resolvase WS08_RS02345 PF06949 Protein of unknown function (DUF1292) WS08_RS02350 PF06949 Protein of unknown function (DUF1292) WS08_RS02360 PF03772 Competence protein WS08_RS02360 PF13567 Domain of unknown function (DUF4131) WS08_RS02360 PF00753 Metallo-beta-lactamase superfamily WS08_RS02365 PF06144 DNA polymerase III, delta subunit WS08_RS02370 PF00312 Ribosomal protein S15 WS08_RS02375 PF01649 Ribosomal protein S20 WS08_RS02385 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WS08_RS02385 PF17770 Ribonuclease J C-terminal domain WS08_RS02385 PF00753 Metallo-beta-lactamase superfamily WS08_RS02395 PF00009 Elongation factor Tu GTP binding domain WS08_RS02395 PF03143 Elongation factor Tu C-terminal domain WS08_RS02395 PF03144 Elongation factor Tu domain 2 WS08_RS02400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WS08_RS02400 PF05697 Bacterial trigger factor protein (TF) WS08_RS02400 PF05698 Bacterial trigger factor protein (TF) C-terminus WS08_RS02405 PF06689 ClpX C4-type zinc finger WS08_RS02405 PF10431 C-terminal, D2-small domain, of ClpB protein WS08_RS02405 PF07724 AAA domain (Cdc48 subfamily) WS08_RS02410 PF01926 50S ribosome-binding GTPase WS08_RS02425 PF01713 Smr domain WS08_RS02425 PF00488 MutS domain V WS08_RS02435 PF00085 Thioredoxin WS08_RS02440 PF01177 Asp/Glu/Hydantoin racemase WS08_RS02445 PF01725 Ham1 family WS08_RS02455 PF04607 Region found in RelA / SpoT proteins WS08_RS02460 PF01513 ATP-NAD kinase WS08_RS02465 PF00849 RNA pseudouridylate synthase WS08_RS02470 PF01769 Divalent cation transporter WS08_RS02470 PF03448 MgtE intracellular N domain WS08_RS02470 PF00571 CBS domain WS08_RS02475 PF17384 RimP C-terminal SH3 domain WS08_RS02475 PF02576 RimP N-terminal domain WS08_RS02480 PF00575 S1 RNA binding domain WS08_RS02480 PF13184 NusA-like KH domain WS08_RS02480 PF08529 NusA N-terminal domain WS08_RS02485 PF04296 Protein of unknown function (DUF448) WS08_RS02490 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family WS08_RS02495 PF00009 Elongation factor Tu GTP binding domain WS08_RS02495 PF11987 Translation-initiation factor 2 WS08_RS02495 PF04760 Translation initiation factor IF-2, N-terminal region WS08_RS02500 PF02033 Ribosome-binding factor A WS08_RS02505 PF13302 Acetyltransferase (GNAT) domain WS08_RS02510 PF16198 tRNA pseudouridylate synthase B C-terminal domain WS08_RS02510 PF01509 TruB family pseudouridylate synthase (N terminal domain) WS08_RS02520 PF01687 Riboflavin kinase WS08_RS02520 PF06574 FAD synthetase WS08_RS02525 PF05670 NFACT protein RNA binding domain WS08_RS02530 PF03932 CutC family WS08_RS02535 PF02645 Uncharacterised protein, DegV family COG1307 WS08_RS02540 PF02645 Uncharacterised protein, DegV family COG1307 WS08_RS02545 PF09330 D-lactate dehydrogenase, membrane binding WS08_RS02545 PF01565 FAD binding domain WS08_RS02550 PF06855 YozE SAM-like fold WS08_RS02555 PF01926 50S ribosome-binding GTPase WS08_RS02560 PF01351 Ribonuclease HII WS08_RS02565 PF00746 LPXTG cell wall anchor motif WS08_RS02580 PF02481 DNA recombination-mediator protein A WS08_RS02580 PF17782 DprA winged helix domain WS08_RS02585 PF01396 Topoisomerase DNA binding C4 zinc finger WS08_RS02585 PF01131 DNA topoisomerase WS08_RS02585 PF01751 Toprim domain WS08_RS02590 PF00589 Phage integrase family WS08_RS02590 PF02899 Phage integrase, N-terminal SAM-like domain WS08_RS02605 PF07690 Major Facilitator Superfamily WS08_RS02610 PF02660 Glycerol-3-phosphate acyltransferase WS08_RS02615 PF00204 DNA gyrase B WS08_RS02615 PF00986 DNA gyrase B subunit, carboxyl terminus WS08_RS02615 PF01751 Toprim domain WS08_RS02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_RS02620 PF00521 DNA gyrase/topoisomerase IV, subunit A WS08_RS02620 PF03989 DNA gyrase C-terminal domain, beta-propeller WS08_RS02640 PF01368 DHH family WS08_RS02640 PF02833 DHHA2 domain WS08_RS02650 PF00005 ABC transporter WS08_RS02650 PF00571 CBS domain WS08_RS02655 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS02680 PF13419 Haloacid dehalogenase-like hydrolase WS08_RS02690 PF08000 Bacterial PH domain WS08_RS02695 PF00753 Metallo-beta-lactamase superfamily WS08_RS02695 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WS08_RS02695 PF17770 Ribonuclease J C-terminal domain WS08_RS02700 PF07288 Protein of unknown function (DUF1447) WS08_RS02710 PF01327 Polypeptide deformylase WS08_RS02715 PF05256 Uncharacterised protein family (UPF0223) WS08_RS02720 PF00459 Inositol monophosphatase family WS08_RS02725 PF14492 Elongation Factor G, domain II WS08_RS02725 PF00679 Elongation factor G C-terminus WS08_RS02725 PF03144 Elongation factor Tu domain 2 WS08_RS02725 PF00009 Elongation factor Tu GTP binding domain WS08_RS02730 PF01098 Cell cycle protein WS08_RS02735 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) WS08_RS02745 PF01467 Cytidylyltransferase-like WS08_RS02750 PF05362 Lon protease (S16) C-terminal proteolytic domain WS08_RS02750 PF13180 PDZ domain WS08_RS02755 PF07690 Major Facilitator Superfamily WS08_RS02760 PF10410 DnaB-helicase binding domain of primase WS08_RS02760 PF01807 CHC2 zinc finger WS08_RS02760 PF08275 DNA primase catalytic core, N-terminal domain WS08_RS02765 PF04539 Sigma-70 region 3 WS08_RS02765 PF04542 Sigma-70 region 2 WS08_RS02765 PF00140 Sigma-70 factor, region 1.2 WS08_RS02765 PF04545 Sigma-70, region 4 WS08_RS02765 PF03979 Sigma-70 factor, region 1.1 WS08_RS02770 PF07690 Major Facilitator Superfamily WS08_RS02775 PF00486 Transcriptional regulatory protein, C terminal WS08_RS02775 PF00072 Response regulator receiver domain WS08_RS02780 PF16736 Single Cache-like WS08_RS02780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_RS02780 PF00512 His Kinase A (phospho-acceptor) domain WS08_RS02780 PF00989 PAS fold WS08_RS02785 PF00485 Phosphoribulokinase / Uridine kinase family WS08_RS02790 PF14794 Domain of unknown function (DUF4479) WS08_RS02790 PF01588 Putative tRNA binding domain WS08_RS02800 PF01225 Mur ligase family, catalytic domain WS08_RS02800 PF02875 Mur ligase family, glutamate ligase domain WS08_RS02800 PF08245 Mur ligase middle domain WS08_RS02805 PF01027 Inhibitor of apoptosis-promoting Bax1 WS08_RS02810 PF01367 5'-3' exonuclease, C-terminal SAM fold WS08_RS02810 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WS08_RS02810 PF00476 DNA polymerase family A WS08_RS02825 PF06827 Zinc finger found in FPG and IleRS WS08_RS02825 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain WS08_RS02825 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain WS08_RS02830 PF01121 Dephospho-CoA kinase WS08_RS02840 PF07319 Primosomal protein DnaI N-terminus WS08_RS02840 PF01695 IstB-like ATP binding protein WS08_RS02855 PF00072 Response regulator receiver domain WS08_RS02855 PF00486 Transcriptional regulatory protein, C terminal WS08_RS02860 PF00512 His Kinase A (phospho-acceptor) domain WS08_RS02860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_RS02860 PF18719 ArlS sensor domain WS08_RS02870 PF13520 Amino acid permease WS08_RS02875 PF04397 LytTr DNA-binding domain WS08_RS02875 PF00072 Response regulator receiver domain WS08_RS02885 PF07943 Penicillin-binding protein 5, C-terminal domain WS08_RS02885 PF00768 D-alanyl-D-alanine carboxypeptidase WS08_RS02890 PF01053 Cys/Met metabolism PLP-dependent enzyme WS08_RS02915 PF01546 Peptidase family M20/M25/M40 WS08_RS02915 PF07687 Peptidase dimerisation domain WS08_RS02920 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family WS08_RS02925 PF12848 ABC transporter WS08_RS02925 PF00005 ABC transporter WS08_RS02975 PF01070 FMN-dependent dehydrogenase WS08_RS02990 PF11798 IMS family HHH motif WS08_RS02990 PF11799 impB/mucB/samB family C-terminal domain WS08_RS02990 PF00817 impB/mucB/samB family WS08_RS03005 PF03577 Peptidase family C69 WS08_RS03060 PF13936 Helix-turn-helix domain WS08_RS03090 PF00535 Glycosyl transferase family 2 WS08_RS03095 PF03006 Haemolysin-III related WS08_RS03100 PF02632 BioY family WS08_RS03110 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit WS08_RS03115 PF01039 Carboxyl transferase domain WS08_RS03120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS08_RS03120 PF02785 Biotin carboxylase C-terminal domain WS08_RS03120 PF00289 Biotin carboxylase, N-terminal domain WS08_RS03125 PF07977 FabA-like domain WS08_RS03130 PF00364 Biotin-requiring enzyme WS08_RS03135 PF02801 Beta-ketoacyl synthase, C-terminal domain WS08_RS03135 PF00109 Beta-ketoacyl synthase, N-terminal domain WS08_RS03145 PF00550 Phosphopantetheine attachment site WS08_RS03145 PF08659 KR domain WS08_RS03145 PF02801 Beta-ketoacyl synthase, C-terminal domain WS08_RS03145 PF00109 Beta-ketoacyl synthase, N-terminal domain WS08_RS03145 PF16197 Ketoacyl-synthetase C-terminal extension WS08_RS03145 PF08240 Alcohol dehydrogenase GroES-like domain WS08_RS03145 PF00698 Acyl transferase domain WS08_RS03145 PF14765 Polyketide synthase dehydratase WS08_RS03150 PF03060 Nitronate monooxygenase WS08_RS03155 PF00550 Phosphopantetheine attachment site WS08_RS03160 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WS08_RS03160 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WS08_RS03170 PF07977 FabA-like domain WS08_RS03175 PF01757 Acyltransferase family WS08_RS03180 PF00005 ABC transporter WS08_RS03190 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS08_RS03190 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WS08_RS03210 PF02581 Thiamine monophosphate synthase WS08_RS03215 PF08543 Phosphomethylpyrimidine kinase WS08_RS03220 PF02110 Hydroxyethylthiazole kinase family WS08_RS03225 PF01979 Amidohydrolase family WS08_RS03225 PF13382 Adenine deaminase C-terminal domain WS08_RS03235 PF03009 Glycerophosphoryl diester phosphodiesterase family WS08_RS03255 PF00990 Diguanylate cyclase, GGDEF domain WS08_RS03270 PF02390 Putative methyltransferase WS08_RS03280 PF00005 ABC transporter WS08_RS03285 PF01230 HIT domain WS08_RS03295 PF17757 UvrB interaction domain WS08_RS03295 PF12344 Ultra-violet resistance protein B WS08_RS03295 PF02151 UvrB/uvrC motif WS08_RS03295 PF04851 Type III restriction enzyme, res subunit WS08_RS03295 PF00271 Helicase conserved C-terminal domain WS08_RS03310 PF03119 NAD-dependent DNA ligase C4 zinc finger domain WS08_RS03310 PF03120 NAD-dependent DNA ligase OB-fold domain WS08_RS03310 PF01653 NAD-dependent DNA ligase adenylation domain WS08_RS03310 PF00533 BRCA1 C Terminus (BRCT) domain WS08_RS03310 PF12826 Helix-hairpin-helix motif WS08_RS03315 PF00580 UvrD/REP helicase N-terminal domain WS08_RS03315 PF13361 UvrD-like helicase C-terminal domain WS08_RS03330 PF01625 Peptide methionine sulfoxide reductase WS08_RS03340 PF02926 THUMP domain WS08_RS03340 PF01170 Putative RNA methylase family UPF0020 WS08_RS03345 PF05103 DivIVA protein WS08_RS03350 PF06908 YspA SLOG family WS08_RS03355 PF03838 Recombination protein U WS08_RS03360 PF00905 Penicillin binding protein transpeptidase domain WS08_RS03360 PF00912 Transglycosylase WS08_RS03370 PF07261 Replication initiation and membrane attachment WS08_RS03380 PF00152 tRNA synthetases class II (D, K and N) WS08_RS03380 PF01336 OB-fold nucleic acid binding domain WS08_RS03390 PF13307 Helicase C-terminal domain WS08_RS03390 PF04851 Type III restriction enzyme, res subunit WS08_RS03390 PF00929 Exonuclease WS08_RS03395 PF04226 Transglycosylase associated protein WS08_RS03460 PF00288 GHMP kinases N terminal domain WS08_RS03460 PF08544 GHMP kinases C terminal WS08_RS03465 PF01070 FMN-dependent dehydrogenase WS08_RS03470 PF00085 Thioredoxin WS08_RS03475 PF02096 60Kd inner membrane protein WS08_RS03485 PF00334 Nucleoside diphosphate kinase WS08_RS03490 PF13520 Amino acid permease WS08_RS03500 PF03601 Conserved hypothetical protein 698 WS08_RS03510 PF00535 Glycosyl transferase family 2 WS08_RS03520 PF00108 Thiolase, N-terminal domain WS08_RS03520 PF02803 Thiolase, C-terminal domain WS08_RS03530 PF01475 Ferric uptake regulator family WS08_RS03540 PF03649 Uncharacterised protein family (UPF0014) WS08_RS03545 PF00005 ABC transporter WS08_RS03550 PF12697 Alpha/beta hydrolase family WS08_RS03555 PF04198 Putative sugar-binding domain WS08_RS03565 PF00005 ABC transporter WS08_RS03575 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS08_RS03575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WS08_RS03580 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WS08_RS03580 PF02817 e3 binding domain WS08_RS03580 PF00364 Biotin-requiring enzyme WS08_RS03585 PF02780 Transketolase, C-terminal domain WS08_RS03585 PF02779 Transketolase, pyrimidine binding domain WS08_RS03590 PF00676 Dehydrogenase E1 component WS08_RS03595 PF10437 Bacterial lipoate protein ligase C-terminus WS08_RS03595 PF03099 Biotin/lipoate A/B protein ligase family WS08_RS03600 PF00128 Alpha amylase, catalytic domain WS08_RS03615 PF13302 Acetyltransferase (GNAT) domain WS08_RS03630 PF03819 MazG nucleotide pyrophosphohydrolase domain WS08_RS03635 PF03641 Possible lysine decarboxylase WS08_RS03650 PF00356 Bacterial regulatory proteins, lacI family WS08_RS03660 PF01268 Formate--tetrahydrofolate ligase WS08_RS03665 PF02844 Phosphoribosylglycinamide synthetase, N domain WS08_RS03665 PF02843 Phosphoribosylglycinamide synthetase, C domain WS08_RS03665 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WS08_RS03670 PF01808 AICARFT/IMPCHase bienzyme WS08_RS03670 PF02142 MGS-like domain WS08_RS03675 PF00551 Formyl transferase WS08_RS03680 PF02769 AIR synthase related protein, C-terminal domain WS08_RS03680 PF00586 AIR synthase related protein, N-terminal domain WS08_RS03685 PF00156 Phosphoribosyl transferase domain WS08_RS03685 PF13537 Glutamine amidotransferase domain WS08_RS03690 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WS08_RS03690 PF02769 AIR synthase related protein, C-terminal domain WS08_RS03690 PF00586 AIR synthase related protein, N-terminal domain WS08_RS03700 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase WS08_RS03705 PF01259 SAICAR synthetase WS08_RS03710 PF02222 ATP-grasp domain WS08_RS03710 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain WS08_RS03715 PF00731 AIR carboxylase WS08_RS03720 PF04914 DltD protein WS08_RS03725 PF00550 Phosphopantetheine attachment site WS08_RS03730 PF03062 MBOAT, membrane-bound O-acyltransferase family WS08_RS03735 PF00501 AMP-binding enzyme WS08_RS03735 PF13193 AMP-binding enzyme C-terminal domain WS08_RS03750 PF06421 GTP-binding protein LepA C-terminus WS08_RS03750 PF00009 Elongation factor Tu GTP binding domain WS08_RS03750 PF00679 Elongation factor G C-terminus WS08_RS03765 PF16912 Glucose dehydrogenase C-terminus WS08_RS03765 PF08240 Alcohol dehydrogenase GroES-like domain WS08_RS03770 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WS08_RS03775 PF04991 LicD family WS08_RS03790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WS08_RS03790 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS08_RS03800 PF00253 Ribosomal protein S14p/S29e WS08_RS03805 PF00471 Ribosomal protein L33 WS08_RS03820 PF00871 Acetokinase family WS08_RS03825 PF07687 Peptidase dimerisation domain WS08_RS03825 PF01546 Peptidase family M20/M25/M40 WS08_RS03830 PF01784 NIF3 (NGG1p interacting factor 3) WS08_RS03835 PF04816 tRNA (adenine(22)-N(1))-methyltransferase WS08_RS03845 PF13344 Haloacid dehalogenase-like hydrolase WS08_RS03845 PF00293 NUDIX domain WS08_RS03860 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WS08_RS03860 PF00056 lactate/malate dehydrogenase, NAD binding domain WS08_RS03865 PF07690 Major Facilitator Superfamily WS08_RS03870 PF07155 ECF-type riboflavin transporter, S component WS08_RS03875 PF08543 Phosphomethylpyrimidine kinase WS08_RS03880 PF00216 Bacterial DNA-binding protein WS08_RS03885 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WS08_RS03885 PF01926 50S ribosome-binding GTPase WS08_RS03890 PF00575 S1 RNA binding domain WS08_RS03895 PF02224 Cytidylate kinase WS08_RS03905 PF00270 DEAD/DEAH box helicase WS08_RS03905 PF00271 Helicase conserved C-terminal domain WS08_RS03915 PF12822 ECF transporter, substrate-specific component WS08_RS03920 PF00849 RNA pseudouridylate synthase WS08_RS03920 PF01479 S4 domain WS08_RS03925 PF04079 Segregation and condensation complex subunit ScpB WS08_RS03930 PF02616 Segregation and condensation protein ScpA WS08_RS03935 PF00583 Acetyltransferase (GNAT) family WS08_RS03940 PF00589 Phage integrase family WS08_RS03940 PF02899 Phage integrase, N-terminal SAM-like domain WS08_RS03945 PF13509 S1 domain WS08_RS03945 PF17783 CvfB-like winged helix domain WS08_RS03955 PF00230 Major intrinsic protein WS08_RS03960 PF00121 Triosephosphate isomerase WS08_RS03965 PF01266 FAD dependent oxidoreductase WS08_RS03965 PF16901 C-terminal domain of alpha-glycerophosphate oxidase WS08_RS03970 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WS08_RS03970 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WS08_RS03975 PF05651 Putative sugar diacid recognition WS08_RS03975 PF17853 GGDEF-like domain WS08_RS03975 PF13556 PucR C-terminal helix-turn-helix domain WS08_RS03980 PF00999 Sodium/hydrogen exchanger family WS08_RS03990 PF04607 Region found in RelA / SpoT proteins WS08_RS03990 PF02824 TGS domain WS08_RS03990 PF13291 ACT domain WS08_RS03995 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WS08_RS03995 PF07733 Bacterial DNA polymerase III alpha NTPase domain WS08_RS03995 PF01336 OB-fold nucleic acid binding domain WS08_RS03995 PF14579 Helix-hairpin-helix motif WS08_RS03995 PF02811 PHP domain WS08_RS04005 PF00186 Dihydrofolate reductase WS08_RS04010 PF12848 ABC transporter WS08_RS04010 PF16326 ABC transporter C-terminal domain WS08_RS04010 PF00005 ABC transporter WS08_RS04015 PF12627 Probable RNA and SrmB- binding site of polymerase A WS08_RS04015 PF13735 tRNA nucleotidyltransferase domain 2 putative WS08_RS04015 PF01743 Poly A polymerase head domain WS08_RS04030 PF01380 SIS domain WS08_RS04040 PF03816 Cell envelope-related transcriptional attenuator domain WS08_RS04045 PF01765 Ribosome recycling factor WS08_RS04050 PF00696 Amino acid kinase family WS08_RS04055 PF00889 Elongation factor TS WS08_RS04065 PF00318 Ribosomal protein S2 WS08_RS04070 PF01541 GIY-YIG catalytic domain WS08_RS04075 PF05175 Methyltransferase small domain WS08_RS04080 PF01553 Acyltransferase WS08_RS04085 PF03672 Uncharacterised protein family (UPF0154) WS08_RS04090 PF05979 Bacterial protein of unknown function (DUF896) WS08_RS04095 PF00156 Phosphoribosyl transferase domain WS08_RS04100 PF02272 DHHA1 domain WS08_RS04100 PF17768 RecJ OB domain WS08_RS04100 PF01368 DHH family WS08_RS04100 PF10141 Single-strand DNA-specific exonuclease, C terminal domain WS08_RS04105 PF12706 Beta-lactamase superfamily domain WS08_RS04105 PF00753 Metallo-beta-lactamase superfamily WS08_RS04120 PF00226 DnaJ domain WS08_RS04120 PF01556 DnaJ C terminal domain WS08_RS04120 PF00684 DnaJ central domain WS08_RS04125 PF00012 Hsp70 protein WS08_RS04130 PF01025 GrpE WS08_RS04135 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding WS08_RS04135 PF01628 HrcA protein C terminal domain WS08_RS04150 PF00535 Glycosyl transferase family 2 WS08_RS04160 PF02397 Bacterial sugar transferase WS08_RS04165 PF00557 Metallopeptidase family M24 WS08_RS04170 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase WS08_RS04175 PF01061 ABC-2 type transporter WS08_RS04180 PF01476 LysM domain WS08_RS04180 PF00005 ABC transporter WS08_RS04190 PF01467 Cytidylyltransferase-like WS08_RS04195 PF02073 Thermophilic metalloprotease (M29) WS08_RS04200 PF00313 'Cold-shock' DNA-binding domain WS08_RS04210 PF07690 Major Facilitator Superfamily WS08_RS04220 PF00485 Phosphoribulokinase / Uridine kinase family WS08_RS04225 PF13538 UvrD-like helicase C-terminal domain WS08_RS04230 PF00154 recA bacterial DNA recombination protein WS08_RS04235 PF00994 Probable molybdopterin binding domain WS08_RS04235 PF02464 Competence-damaged protein WS08_RS04235 PF18146 Damage-inducible protein CinA KH domain WS08_RS04240 PF01066 CDP-alcohol phosphatidyltransferase WS08_RS04245 PF13464 Domain of unknown function (DUF4115) WS08_RS04250 PF00675 Insulinase (Peptidase family M16) WS08_RS04250 PF05193 Peptidase M16 inactive domain WS08_RS04255 PF05193 Peptidase M16 inactive domain WS08_RS04260 PF13396 Phospholipase_D-nuclease N-terminal WS08_RS04260 PF13091 PLD-like domain WS08_RS04280 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WS08_RS04280 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WS08_RS04285 PF01336 OB-fold nucleic acid binding domain WS08_RS04285 PF01966 HD domain WS08_RS04290 PF02463 RecF/RecN/SMC N terminal domain WS08_RS04295 PF00149 Calcineurin-like phosphoesterase WS08_RS04305 PF06133 Control of competence regulator ComK, YlbF/YmcA WS08_RS04310 PF00905 Penicillin binding protein transpeptidase domain WS08_RS04310 PF00912 Transglycosylase WS08_RS04315 PF01316 Arginine repressor, DNA binding domain WS08_RS04315 PF02863 Arginine repressor, C-terminal domain WS08_RS04320 PF03485 Arginyl tRNA synthetase N terminal domain WS08_RS04320 PF05746 DALR anticodon binding domain WS08_RS04320 PF00750 tRNA synthetases class I (R) WS08_RS04330 PF02875 Mur ligase family, glutamate ligase domain WS08_RS04330 PF08245 Mur ligase middle domain WS08_RS04335 PF01725 Ham1 family WS08_RS04345 PF00781 Diacylglycerol kinase catalytic domain WS08_RS04350 PF02637 GatB domain WS08_RS04350 PF02934 GatB/GatE catalytic domain WS08_RS04355 PF01425 Amidase WS08_RS04360 PF02686 Glu-tRNAGln amidotransferase C subunit WS08_RS04365 PF01189 16S rRNA methyltransferase RsmB/F WS08_RS04365 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF WS08_RS04365 PF17126 RsmF rRNA methyltransferase first C-terminal domain WS08_RS04385 PF00248 Aldo/keto reductase family WS08_RS04390 PF14572 Phosphoribosyl synthetase-associated domain WS08_RS04390 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WS08_RS04395 PF01180 Dihydroorotate dehydrogenase WS08_RS04400 PF09515 Thiamine transporter protein (Thia_YuaJ) WS08_RS04405 PF01487 Type I 3-dehydroquinase WS08_RS04410 PF01202 Shikimate kinase WS08_RS04415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WS08_RS04420 PF01264 Chorismate synthase WS08_RS04425 PF01761 3-dehydroquinate synthase WS08_RS04430 PF18152 DAHP synthase ferredoxin-like domain WS08_RS04430 PF00793 DAHP synthetase I family WS08_RS04435 PF08501 Shikimate dehydrogenase substrate binding domain WS08_RS04435 PF01488 Shikimate / quinate 5-dehydrogenase WS08_RS04435 PF18317 Shikimate 5'-dehydrogenase C-terminal domain WS08_RS04445 PF00990 Diguanylate cyclase, GGDEF domain WS08_RS04455 PF12822 ECF transporter, substrate-specific component WS08_RS04460 PF00155 Aminotransferase class I and II WS08_RS04470 PF00155 Aminotransferase class I and II WS08_RS04480 PF00356 Bacterial regulatory proteins, lacI family WS08_RS04485 PF00288 GHMP kinases N terminal domain WS08_RS04485 PF08544 GHMP kinases C terminal WS08_RS04490 PF12822 ECF transporter, substrate-specific component WS08_RS04505 PF02742 Iron dependent repressor, metal binding and dimerisation domain WS08_RS04505 PF00950 ABC 3 transport family WS08_RS04515 PF04203 Sortase domain WS08_RS04520 PF02629 CoA binding domain WS08_RS04520 PF06971 Putative DNA-binding protein N-terminus WS08_RS04525 PF00271 Helicase conserved C-terminal domain WS08_RS04525 PF00270 DEAD/DEAH box helicase WS08_RS04530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold WS08_RS04535 PF05958 tRNA (Uracil-5-)-methyltransferase WS08_RS04535 PF01938 TRAM domain WS08_RS04540 PF01435 Peptidase family M48 WS08_RS04545 PF04011 LemA family WS08_RS04560 PF13673 Acetyltransferase (GNAT) domain WS08_RS04580 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WS08_RS04580 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WS08_RS04580 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WS08_RS04580 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WS08_RS04585 PF03275 UDP-galactopyranose mutase WS08_RS04590 PF00206 Lyase WS08_RS04590 PF10397 Adenylosuccinate lyase C-terminus WS08_RS04600 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS08_RS04600 PF02142 MGS-like domain WS08_RS04600 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WS08_RS04605 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WS08_RS04605 PF00117 Glutamine amidotransferase class-I WS08_RS04610 PF00156 Phosphoribosyl transferase domain WS08_RS04615 PF01479 S4 domain WS08_RS04615 PF00849 RNA pseudouridylate synthase WS08_RS04625 PF03553 Na+/H+ antiporter family WS08_RS04630 PF00324 Amino acid permease WS08_RS04635 PF01197 Ribosomal protein L31 WS08_RS04640 PF00679 Elongation factor G C-terminus WS08_RS04640 PF00009 Elongation factor Tu GTP binding domain WS08_RS04640 PF03144 Elongation factor Tu domain 2 WS08_RS04640 PF06421 GTP-binding protein LepA C-terminus WS08_RS04645 PF00162 Phosphoglycerate kinase WS08_RS04650 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WS08_RS04650 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WS08_RS04675 PF02872 5'-nucleotidase, C-terminal domain WS08_RS04675 PF00149 Calcineurin-like phosphoesterase WS08_RS04680 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS04685 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS04690 PF00005 ABC transporter WS08_RS04710 PF01223 DNA/RNA non-specific endonuclease WS08_RS04720 PF03613 PTS system mannose/fructose/sorbose family IID component WS08_RS04725 PF03609 PTS system sorbose-specific iic component WS08_RS04730 PF03610 PTS system fructose IIA component WS08_RS04730 PF03830 PTS system sorbose subfamily IIB component WS08_RS04795 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WS08_RS04795 PF00575 S1 RNA binding domain WS08_RS04795 PF01138 3' exoribonuclease family, domain 1 WS08_RS04795 PF03725 3' exoribonuclease family, domain 2 WS08_RS04795 PF00013 KH domain WS08_RS04800 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WS08_RS04805 PF09335 SNARE associated Golgi protein WS08_RS04810 PF01192 RNA polymerase Rpb6 WS08_RS04815 PF00625 Guanylate kinase WS08_RS04820 PF13476 AAA domain WS08_RS04825 PF02863 Arginine repressor, C-terminal domain WS08_RS04825 PF01316 Arginine repressor, DNA binding domain WS08_RS04830 PF01728 FtsJ-like methyltransferase WS08_RS04830 PF01479 S4 domain WS08_RS04835 PF00348 Polyprenyl synthetase WS08_RS04840 PF02609 Exonuclease VII small subunit WS08_RS04845 PF02601 Exonuclease VII, large subunit WS08_RS04845 PF13742 OB-fold nucleic acid binding domain WS08_RS04850 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WS08_RS04850 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WS08_RS04855 PF07155 ECF-type riboflavin transporter, S component WS08_RS04870 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase WS08_RS04875 PF03129 Anticodon binding domain WS08_RS04875 PF02824 TGS domain WS08_RS04875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS08_RS04875 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WS08_RS04885 PF01119 DNA mismatch repair protein, C-terminal domain WS08_RS04885 PF08676 MutL C terminal dimerisation domain WS08_RS04890 PF05192 MutS domain III WS08_RS04890 PF05188 MutS domain II WS08_RS04890 PF05190 MutS family domain IV WS08_RS04890 PF01624 MutS domain I WS08_RS04890 PF00488 MutS domain V WS08_RS04900 PF05636 HIGH Nucleotidyl Transferase WS08_RS04915 PF01966 HD domain WS08_RS04920 PF01467 Cytidylyltransferase-like WS08_RS04930 PF01926 50S ribosome-binding GTPase WS08_RS04940 PF01820 D-ala D-ala ligase N-terminus WS08_RS04940 PF07478 D-ala D-ala ligase C-terminus WS08_RS04950 PF13520 Amino acid permease WS08_RS04955 PF00118 TCP-1/cpn60 chaperonin family WS08_RS04960 PF00166 Chaperonin 10 Kd subunit WS08_RS04965 PF12848 ABC transporter WS08_RS04965 PF00005 ABC transporter WS08_RS04965 PF16326 ABC transporter C-terminal domain WS08_RS04970 PF08245 Mur ligase middle domain WS08_RS04970 PF02875 Mur ligase family, glutamate ligase domain WS08_RS04975 PF10458 Valyl tRNA synthetase tRNA binding arm WS08_RS04975 PF00133 tRNA synthetases class I (I, L, M and V) WS08_RS04975 PF08264 Anticodon-binding domain of tRNA WS08_RS04980 PF01810 LysE type translocator WS08_RS04985 PF00582 Universal stress protein family WS08_RS05000 PF12002 MgsA AAA+ ATPase C terminal WS08_RS05000 PF16193 AAA C-terminal domain WS08_RS05000 PF05496 Holliday junction DNA helicase RuvB P-loop domain WS08_RS05015 PF00009 Elongation factor Tu GTP binding domain WS08_RS05015 PF03144 Elongation factor Tu domain 2 WS08_RS05015 PF16658 Class II release factor RF3, C-terminal domain WS08_RS05025 PF04167 Protein of unknown function (DUF402) WS08_RS05030 PF02631 RecX family WS08_RS05040 PF00005 ABC transporter WS08_RS05045 PF00005 ABC transporter WS08_RS05050 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS05055 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS05060 PF12849 PBP superfamily domain WS08_RS05080 PF01906 Putative heavy-metal-binding WS08_RS05085 PF13344 Haloacid dehalogenase-like hydrolase WS08_RS05090 PF06265 Protein of unknown function (DUF1027) WS08_RS05095 PF02872 5'-nucleotidase, C-terminal domain WS08_RS05105 PF00557 Metallopeptidase family M24 WS08_RS05105 PF01321 Creatinase/Prolidase N-terminal domain WS08_RS05110 PF13378 Enolase C-terminal domain-like WS08_RS05110 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain WS08_RS05125 PF00561 alpha/beta hydrolase fold WS08_RS05130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS08_RS05130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WS08_RS05130 PF16582 Middle domain of thiamine pyrophosphate WS08_RS05135 PF00425 chorismate binding enzyme WS08_RS05145 PF00884 Sulfatase WS08_RS05150 PF13520 Amino acid permease WS08_RS05155 PF03390 2-hydroxycarboxylate transporter family WS08_RS05160 PF07690 Major Facilitator Superfamily WS08_RS05170 PF08240 Alcohol dehydrogenase GroES-like domain WS08_RS05170 PF00107 Zinc-binding dehydrogenase WS08_RS05175 PF01048 Phosphorylase superfamily WS08_RS05180 PF01676 Metalloenzyme superfamily WS08_RS05185 PF01791 DeoC/LacD family aldolase WS08_RS05190 PF02378 Phosphotransferase system, EIIC WS08_RS05200 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit WS08_RS05205 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit WS08_RS05210 PF00005 ABC transporter WS08_RS05215 PF01032 FecCD transport family WS08_RS05220 PF01497 Periplasmic binding protein WS08_RS05240 PF00768 D-alanyl-D-alanine carboxypeptidase WS08_RS05240 PF07943 Penicillin-binding protein 5, C-terminal domain WS08_RS05245 PF01016 Ribosomal L27 protein WS08_RS05250 PF00829 Ribosomal prokaryotic L21 protein WS08_RS05255 PF07690 Major Facilitator Superfamily WS08_RS05285 PF03951 Glutamine synthetase, beta-Grasp domain WS08_RS05285 PF00120 Glutamine synthetase, catalytic domain WS08_RS05290 PF13411 MerR HTH family regulatory protein WS08_RS05310 PF00480 ROK family WS08_RS05325 PF01812 5-formyltetrahydrofolate cyclo-ligase family WS08_RS05330 PF03717 Penicillin-binding Protein dimerisation domain WS08_RS05330 PF00905 Penicillin binding protein transpeptidase domain WS08_RS05340 PF01272 Transcription elongation factor, GreA/GreB, C-term WS08_RS05340 PF03449 Transcription elongation factor, N-terminal WS08_RS05345 PF02618 YceG-like family WS08_RS05350 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WS08_RS05350 PF01588 Putative tRNA binding domain WS08_RS05350 PF03147 Ferredoxin-fold anticodon binding domain WS08_RS05350 PF03484 tRNA synthetase B5 domain WS08_RS05350 PF03483 B3/4 domain WS08_RS05355 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WS08_RS05355 PF01409 tRNA synthetases class II core domain (F) WS08_RS05360 PF01638 HxlR-like helix-turn-helix WS08_RS05365 PF02388 FemAB family WS08_RS05370 PF08032 RNA 2'-O ribose methyltransferase substrate binding WS08_RS05370 PF00588 SpoU rRNA Methylase family WS08_RS05385 PF03462 PCRF domain WS08_RS05385 PF00472 RF-1 domain WS08_RS05390 PF01043 SecA preprotein cross-linking domain WS08_RS05390 PF07517 SecA DEAD-like domain WS08_RS05390 PF07516 SecA Wing and Scaffold domain WS08_RS05395 PF00749 tRNA synthetases class I (E and Q), catalytic domain WS08_RS05400 PF18073 Rubredoxin metal binding domain WS08_RS05405 PF00692 dUTPase WS08_RS05415 PF00877 NlpC/P60 family WS08_RS05425 PF17871 AAA lid domain WS08_RS05425 PF07724 AAA domain (Cdc48 subfamily) WS08_RS05425 PF10431 C-terminal, D2-small domain, of ClpB protein WS08_RS05425 PF00004 ATPase family associated with various cellular activities (AAA) WS08_RS05430 PF08240 Alcohol dehydrogenase GroES-like domain WS08_RS05430 PF00107 Zinc-binding dehydrogenase WS08_RS05435 PF00205 Thiamine pyrophosphate enzyme, central domain WS08_RS05435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS08_RS05435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WS08_RS05440 PF03306 Alpha-acetolactate decarboxylase WS08_RS05465 PF00582 Universal stress protein family WS08_RS05470 PF01783 Ribosomal L32p protein family WS08_RS05480 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WS08_RS05480 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WS08_RS05485 PF00574 Clp protease WS08_RS05495 PF02650 WhiA C-terminal HTH domain WS08_RS05495 PF10298 WhiA N-terminal LAGLIDADG-like domain WS08_RS05495 PF14527 WhiA LAGLIDADG-like domain WS08_RS05500 PF01933 Uncharacterised protein family UPF0052 WS08_RS05505 PF03668 P-loop ATPase protein family WS08_RS05515 PF00005 ABC transporter WS08_RS05515 PF17755 UvrA DNA-binding domain WS08_RS05515 PF17760 UvrA interaction domain WS08_RS05525 PF02447 GntP family permease WS08_RS05540 PF00380 Ribosomal protein S9/S16 WS08_RS05545 PF00572 Ribosomal protein L13 WS08_RS05550 PF01416 tRNA pseudouridine synthase WS08_RS05555 PF02361 Cobalt transport protein WS08_RS05560 PF00005 ABC transporter WS08_RS05565 PF00005 ABC transporter WS08_RS05570 PF01757 Acyltransferase family WS08_RS05585 PF01297 Zinc-uptake complex component A periplasmic WS08_RS05590 PF00950 ABC 3 transport family WS08_RS05595 PF00005 ABC transporter WS08_RS05605 PF01641 SelR domain WS08_RS05610 PF00542 Ribosomal protein L7/L12 C-terminal domain WS08_RS05610 PF16320 Ribosomal protein L7/L12 dimerisation domain WS08_RS05615 PF00466 Ribosomal protein L10 WS08_RS05620 PF00687 Ribosomal protein L1p/L10e family WS08_RS05625 PF03946 Ribosomal protein L11, N-terminal domain WS08_RS05625 PF00298 Ribosomal protein L11, RNA binding domain WS08_RS05630 PF00467 KOW motif WS08_RS05630 PF02357 Transcription termination factor nusG WS08_RS05635 PF00584 SecE/Sec61-gamma subunits of protein translocation complex WS08_RS05645 PF08032 RNA 2'-O ribose methyltransferase substrate binding WS08_RS05645 PF00588 SpoU rRNA Methylase family WS08_RS05650 PF00636 Ribonuclease III domain WS08_RS05655 PF01406 tRNA synthetases class I (C) catalytic domain WS08_RS05655 PF09190 DALR domain WS08_RS05665 PF02540 NAD synthase WS08_RS05670 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family WS08_RS05670 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain WS08_RS05670 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain WS08_RS05675 PF03180 NLPA lipoprotein WS08_RS05680 PF00005 ABC transporter WS08_RS05680 PF09383 NIL domain WS08_RS05685 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS05690 PF01196 Ribosomal protein L17 WS08_RS05695 PF01000 RNA polymerase Rpb3/RpoA insert domain WS08_RS05695 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WS08_RS05695 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WS08_RS05700 PF00411 Ribosomal protein S11 WS08_RS05705 PF00416 Ribosomal protein S13/S18 WS08_RS05710 PF00444 Ribosomal protein L36 WS08_RS05715 PF01176 Translation initiation factor 1A / IF-1 WS08_RS05720 PF05191 Adenylate kinase, active site lid WS08_RS05725 PF00344 SecY translocase WS08_RS05730 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WS08_RS05735 PF00327 Ribosomal protein L30p/L7e WS08_RS05740 PF03719 Ribosomal protein S5, C-terminal domain WS08_RS05740 PF00333 Ribosomal protein S5, N-terminal domain WS08_RS05745 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WS08_RS05750 PF00347 Ribosomal protein L6 WS08_RS05755 PF00410 Ribosomal protein S8 WS08_RS05760 PF00281 Ribosomal protein L5 WS08_RS05760 PF00673 ribosomal L5P family C-terminus WS08_RS05765 PF00467 KOW motif WS08_RS05765 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WS08_RS05770 PF00238 Ribosomal protein L14p/L23e WS08_RS05775 PF00366 Ribosomal protein S17 WS08_RS05780 PF00831 Ribosomal L29 protein WS08_RS05785 PF00252 Ribosomal protein L16p/L10e WS08_RS05790 PF00189 Ribosomal protein S3, C-terminal domain WS08_RS05790 PF07650 KH domain WS08_RS05795 PF00237 Ribosomal protein L22p/L17e WS08_RS05800 PF00203 Ribosomal protein S19 WS08_RS05805 PF03947 Ribosomal Proteins L2, C-terminal domain WS08_RS05805 PF00181 Ribosomal Proteins L2, RNA binding domain WS08_RS05810 PF00276 Ribosomal protein L23 WS08_RS05815 PF00573 Ribosomal protein L4/L1 family WS08_RS05820 PF00297 Ribosomal protein L3 WS08_RS05825 PF00338 Ribosomal protein S10p/S20e WS08_RS05830 PF00348 Polyprenyl synthetase WS08_RS05835 PF00814 Glycoprotease family WS08_RS05850 PF00814 Glycoprotease family WS08_RS05855 PF16363 GDP-mannose 4,6 dehydratase WS08_RS05865 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WS08_RS05875 PF06153 Cyclic-di-AMP receptor WS08_RS05880 PF02223 Thymidylate kinase WS08_RS05890 PF02132 RecR protein WS08_RS05890 PF13662 Toprim domain WS08_RS05895 PF02575 YbaB/EbfC DNA-binding family WS08_RS05900 PF12169 DNA polymerase III subunits gamma and tau domain III WS08_RS05905 PF14437 MafB19-like deaminase WS08_RS05910 PF05175 Methyltransferase small domain WS08_RS05945 PF00465 Iron-containing alcohol dehydrogenase WS08_RS05950 PF00623 RNA polymerase Rpb1, domain 2 WS08_RS05950 PF05000 RNA polymerase Rpb1, domain 4 WS08_RS05950 PF04998 RNA polymerase Rpb1, domain 5 WS08_RS05950 PF04997 RNA polymerase Rpb1, domain 1 WS08_RS05950 PF04983 RNA polymerase Rpb1, domain 3 WS08_RS05955 PF04560 RNA polymerase Rpb2, domain 7 WS08_RS05955 PF04563 RNA polymerase beta subunit WS08_RS05955 PF00562 RNA polymerase Rpb2, domain 6 WS08_RS05955 PF04561 RNA polymerase Rpb2, domain 2 WS08_RS05955 PF10385 RNA polymerase beta subunit external 1 domain WS08_RS05955 PF04565 RNA polymerase Rpb2, domain 3 WS08_RS05965 PF17727 CtsR C-terminal dimerization domain WS08_RS05965 PF05848 CtsR N-terminal HTH domain WS08_RS05985 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS08_RS05985 PF02403 Seryl-tRNA synthetase N-terminal domain WS08_RS05990 PF01712 Deoxynucleoside kinase WS08_RS05995 PF02557 D-alanyl-D-alanine carboxypeptidase WS08_RS06000 PF00768 D-alanyl-D-alanine carboxypeptidase WS08_RS06000 PF07943 Penicillin-binding protein 5, C-terminal domain WS08_RS06005 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WS08_RS06005 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain WS08_RS06010 PF02874 ATP synthase alpha/beta family, beta-barrel domain WS08_RS06010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS08_RS06015 PF00231 ATP synthase WS08_RS06020 PF00306 ATP synthase alpha/beta chain, C terminal domain WS08_RS06020 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS08_RS06020 PF02874 ATP synthase alpha/beta family, beta-barrel domain WS08_RS06025 PF00213 ATP synthase delta (OSCP) subunit WS08_RS06030 PF00430 ATP synthase B/B' CF(0) WS08_RS06035 PF00137 ATP synthase subunit C WS08_RS06040 PF00119 ATP synthase A chain WS08_RS06045 PF00860 Permease family WS08_RS06060 PF00464 Serine hydroxymethyltransferase WS08_RS06065 PF01300 Telomere recombination WS08_RS06065 PF03481 Putative GTP-binding controlling metal-binding WS08_RS06070 PF05175 Methyltransferase small domain WS08_RS06075 PF00472 RF-1 domain WS08_RS06075 PF03462 PCRF domain WS08_RS06080 PF00265 Thymidine kinase WS08_RS06085 PF07685 CobB/CobQ-like glutamine amidotransferase domain WS08_RS06090 PF08245 Mur ligase middle domain WS08_RS06090 PF08353 Domain of unknown function (DUF1727) WS08_RS06095 PF01238 Phosphomannose isomerase type I WS08_RS06105 PF00294 pfkB family carbohydrate kinase WS08_RS06105 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) WS08_RS06110 PF00294 pfkB family carbohydrate kinase WS08_RS06110 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) WS08_RS06115 PF01773 Na+ dependent nucleoside transporter N-terminus WS08_RS06115 PF07662 Na+ dependent nucleoside transporter C-terminus WS08_RS06120 PF01156 Inosine-uridine preferring nucleoside hydrolase WS08_RS06125 PF01156 Inosine-uridine preferring nucleoside hydrolase WS08_RS06140 PF00664 ABC transporter transmembrane region WS08_RS06140 PF00005 ABC transporter WS08_RS06145 PF00664 ABC transporter transmembrane region WS08_RS06145 PF00005 ABC transporter WS08_RS06150 PF13167 GTP-binding GTPase N-terminal WS08_RS06150 PF16360 GTP-binding GTPase Middle Region WS08_RS06150 PF01926 50S ribosome-binding GTPase WS08_RS06155 PF00300 Histidine phosphatase superfamily (branch 1) WS08_RS06170 PF03167 Uracil DNA glycosylase superfamily WS08_RS06175 PF02447 GntP family permease WS08_RS06180 PF03372 Endonuclease/Exonuclease/phosphatase family WS08_RS06185 PF00465 Iron-containing alcohol dehydrogenase WS08_RS06185 PF00171 Aldehyde dehydrogenase family WS08_RS06195 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WS08_RS06195 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WS08_RS06200 PF13520 Amino acid permease WS08_RS06205 PF00696 Amino acid kinase family WS08_RS06210 PF05649 Peptidase family M13 WS08_RS06210 PF01431 Peptidase family M13 WS08_RS06225 PF09364 XFP N-terminal domain WS08_RS06225 PF09363 XFP C-terminal domain WS08_RS06225 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase WS08_RS06230 PF07702 UTRA domain WS08_RS06230 PF00392 Bacterial regulatory proteins, gntR family WS08_RS06235 PF01966 HD domain WS08_RS06265 PF00005 ABC transporter WS08_RS06265 PF12848 ABC transporter WS08_RS06275 PF00005 ABC transporter WS08_RS06285 PF01047 MarR family WS08_RS06290 PF10263 SprT-like family WS08_RS06330 PF00854 POT family WS08_RS06340 PF00989 PAS fold WS08_RS06340 PF16736 Single Cache-like WS08_RS06340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_RS06340 PF00512 His Kinase A (phospho-acceptor) domain WS08_RS06345 PF00072 Response regulator receiver domain WS08_RS06345 PF00486 Transcriptional regulatory protein, C terminal WS08_RS06355 PF01926 50S ribosome-binding GTPase WS08_RS06355 PF06071 Protein of unknown function (DUF933) WS08_RS06360 PF06107 Bacterial protein of unknown function (DUF951) WS08_RS06365 PF02195 ParB-like nuclease domain WS08_RS06365 PF17762 HTH domain found in ParB protein WS08_RS06370 PF13614 AAA domain WS08_RS06375 PF02527 rRNA small subunit methyltransferase G WS08_RS06380 PF14815 NUDIX domain WS08_RS06380 PF00730 HhH-GPD superfamily base excision DNA repair protein WS08_RS06385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS08_RS06385 PF00512 His Kinase A (phospho-acceptor) domain WS08_RS06390 PF00072 Response regulator receiver domain WS08_RS06390 PF00486 Transcriptional regulatory protein, C terminal WS08_RS06395 PF13193 AMP-binding enzyme C-terminal domain WS08_RS06395 PF00501 AMP-binding enzyme WS08_RS06400 PF00378 Enoyl-CoA hydratase/isomerase WS08_RS06405 PF03061 Thioesterase superfamily WS08_RS06410 PF00857 Isochorismatase family WS08_RS06420 PF02229 Transcriptional Coactivator p15 (PC4) WS08_RS06425 PF00710 Asparaginase, N-terminal WS08_RS06425 PF17763 Glutaminase/Asparaginase C-terminal domain WS08_RS06430 PF13520 Amino acid permease WS08_RS06440 PF00107 Zinc-binding dehydrogenase WS08_RS06440 PF16884 N-terminal domain of oxidoreductase WS08_RS06450 PF00230 Major intrinsic protein WS08_RS06485 PF03853 YjeF-related protein N-terminus WS08_RS06500 PF13419 Haloacid dehalogenase-like hydrolase WS08_RS06505 PF03636 Glycosyl hydrolase family 65, N-terminal domain WS08_RS06505 PF03633 Glycosyl hydrolase family 65, C-terminal domain WS08_RS06505 PF03632 Glycosyl hydrolase family 65 central catalytic domain WS08_RS06510 PF00367 phosphotransferase system, EIIB WS08_RS06510 PF02378 Phosphotransferase system, EIIC WS08_RS06510 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 WS08_RS06515 PF00367 phosphotransferase system, EIIB WS08_RS06515 PF02378 Phosphotransferase system, EIIC WS08_RS06515 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 WS08_RS06520 PF07702 UTRA domain WS08_RS06520 PF00392 Bacterial regulatory proteins, gntR family WS08_RS06535 PF02082 Transcriptional regulator WS08_RS06540 PF00690 Cation transporter/ATPase, N-terminus WS08_RS06540 PF00689 Cation transporting ATPase, C-terminus WS08_RS06545 PF01207 Dihydrouridine synthase (Dus) WS08_RS06550 PF01381 Helix-turn-helix WS08_RS06570 PF07859 alpha/beta hydrolase fold WS08_RS06575 PF00324 Amino acid permease WS08_RS06580 PF01594 AI-2E family transporter WS08_RS06590 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS08_RS06595 PF00528 Binding-protein-dependent transport system inner membrane component WS08_RS06600 PF00005 ABC transporter WS08_RS06610 PF01022 Bacterial regulatory protein, arsR family WS08_RS06615 PF00403 Heavy-metal-associated domain WS08_RS06620 PF00440 Bacterial regulatory proteins, tetR family WS08_RS06625 PF05958 tRNA (Uracil-5-)-methyltransferase WS08_RS06625 PF01938 TRAM domain WS08_RS06630 PF00905 Penicillin binding protein transpeptidase domain WS08_RS06630 PF00912 Transglycosylase WS08_RS06635 PF00117 Glutamine amidotransferase class-I WS08_RS06635 PF02540 NAD synthase WS08_RS06635 PF00958 GMP synthase C terminal domain WS08_RS06645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS08_RS06645 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WS08_RS06645 PF00205 Thiamine pyrophosphate enzyme, central domain WS08_RS06655 PF00106 short chain dehydrogenase WS08_RS06660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily WS08_RS06665 PF00248 Aldo/keto reductase family WS08_RS06670 PF01638 HxlR-like helix-turn-helix WS08_RS06675 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain WS08_RS06675 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain WS08_RS06695 PF02386 Cation transport protein WS08_RS06700 PF02590 Predicted SPOUT methyltransferase WS08_RS06705 PF00324 Amino acid permease WS08_RS06710 PF02080 TrkA-C domain WS08_RS06710 PF02254 TrkA-N domain WS08_RS06715 PF10502 Signal peptidase, peptidase S26 WS08_RS06720 PF02096 60Kd inner membrane protein WS08_RS06725 PF00825 Ribonuclease P WS08_RS06750 PF02517 CPBP intramembrane metalloprotease WS08_RS06765 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase WS08_RS06800 PF01381 Helix-turn-helix