locus-tag class description WCLE_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix WCLE_RS00005 PF11638 DnaA N-terminal domain WCLE_RS00005 PF00308 Bacterial dnaA protein WCLE_RS00020 PF00925 GTP cyclohydrolase II WCLE_RS00025 PF04335 VirB8 protein WCLE_RS00040 PF00437 Type II/IV secretion system protein WCLE_RS00045 PF02534 Type IV secretory system Conjugative DNA transfer WCLE_RS00065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WCLE_RS00065 PF00512 His Kinase A (phospho-acceptor) domain WCLE_RS00065 PF08448 PAS fold WCLE_RS00065 PF00072 Response regulator receiver domain WCLE_RS00065 PF13188 PAS domain WCLE_RS00070 PF01218 Coproporphyrinogen III oxidase WCLE_RS00080 PF00330 Aconitase family (aconitate hydratase) WCLE_RS00080 PF00694 Aconitase C-terminal domain WCLE_RS00085 PF00226 DnaJ domain WCLE_RS00085 PF01556 DnaJ C terminal domain WCLE_RS00085 PF00684 DnaJ central domain WCLE_RS00095 PF00270 DEAD/DEAH box helicase WCLE_RS00095 PF00271 Helicase conserved C-terminal domain WCLE_RS00095 PF17191 RecG wedge domain WCLE_RS00115 PF04545 Sigma-70, region 4 WCLE_RS00115 PF04542 Sigma-70 region 2 WCLE_RS00115 PF00140 Sigma-70 factor, region 1.2 WCLE_RS00120 PF13505 Outer membrane protein beta-barrel domain WCLE_RS00125 PF02575 YbaB/EbfC DNA-binding family WCLE_RS00130 PF12169 DNA polymerase III subunits gamma and tau domain III WCLE_RS00135 PF00043 Glutathione S-transferase, C-terminal domain WCLE_RS00135 PF02798 Glutathione S-transferase, N-terminal domain WCLE_RS00140 PF01596 O-methyltransferase WCLE_RS00150 PF13462 Thioredoxin WCLE_RS00155 PF03364 Polyketide cyclase / dehydrase and lipid transport WCLE_RS00170 PF00696 Amino acid kinase family WCLE_RS00170 PF01842 ACT domain WCLE_RS00170 PF13840 ACT domain WCLE_RS00185 PF00589 Phage integrase family WCLE_RS00185 PF02899 Phage integrase, N-terminal SAM-like domain WCLE_RS00195 PF01649 Ribosomal protein S20 WCLE_RS00200 PF00285 Citrate synthase, C-terminal domain WCLE_RS00205 PF00486 Transcriptional regulatory protein, C terminal WCLE_RS00205 PF00072 Response regulator receiver domain WCLE_RS00210 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WCLE_RS00210 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WCLE_RS00215 PF04608 Phosphatidylglycerophosphatase A WCLE_RS00255 PF13085 2Fe-2S iron-sulfur cluster binding domain WCLE_RS00260 PF02130 Uncharacterized protein family UPF0054 WCLE_RS00270 PF00091 Tubulin/FtsZ family, GTPase domain WCLE_RS00270 PF12327 FtsZ family, C-terminal domain WCLE_RS00280 PF13335 Magnesium chelatase, subunit ChlI C-terminal WCLE_RS00280 PF01078 Magnesium chelatase, subunit ChlI WCLE_RS00285 PF17871 AAA lid domain WCLE_RS00285 PF02861 Clp amino terminal domain, pathogenicity island component WCLE_RS00285 PF10431 C-terminal, D2-small domain, of ClpB protein WCLE_RS00285 PF00004 ATPase family associated with various cellular activities (AAA) WCLE_RS00285 PF07724 AAA domain (Cdc48 subfamily) WCLE_RS00295 PF00478 IMP dehydrogenase / GMP reductase domain WCLE_RS00295 PF00571 CBS domain WCLE_RS00315 PF07690 Major Facilitator Superfamily WCLE_RS00330 PF02355 Protein export membrane protein WCLE_RS00335 PF00375 Sodium:dicarboxylate symporter family WCLE_RS00340 PF00156 Phosphoribosyl transferase domain WCLE_RS00380 PF01728 FtsJ-like methyltransferase WCLE_RS00385 PF10691 Protein of unknown function (DUF2497) WCLE_RS00395 PF00572 Ribosomal protein L13 WCLE_RS00400 PF00380 Ribosomal protein S9/S16 WCLE_RS00410 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ WCLE_RS00440 PF01113 Dihydrodipicolinate reductase, N-terminus WCLE_RS00440 PF05173 Dihydrodipicolinate reductase, C-terminus WCLE_RS00445 PF00005 ABC transporter WCLE_RS00450 PF13288 DXP reductoisomerase C-terminal domain WCLE_RS00450 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain WCLE_RS00450 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase WCLE_RS00460 PF03653 Uncharacterised protein family (UPF0093) WCLE_RS00465 PF00676 Dehydrogenase E1 component WCLE_RS00470 PF01523 Putative modulator of DNA gyrase WCLE_RS00490 PF00004 ATPase family associated with various cellular activities (AAA) WCLE_RS00490 PF07724 AAA domain (Cdc48 subfamily) WCLE_RS00490 PF10431 C-terminal, D2-small domain, of ClpB protein WCLE_RS00495 PF00227 Proteasome subunit WCLE_RS00520 PF00762 Ferrochelatase WCLE_RS00530 PF00334 Nucleoside diphosphate kinase WCLE_RS00535 PF01297 Zinc-uptake complex component A periplasmic WCLE_RS00540 PF00005 ABC transporter WCLE_RS00545 PF03109 ABC1 family WCLE_RS00550 PF00032 Cytochrome b(C-terminal)/b6/petD WCLE_RS00550 PF00033 Cytochrome b/b6/petB WCLE_RS00555 PF00032 Cytochrome b(C-terminal)/b6/petD WCLE_RS00555 PF02167 Cytochrome C1 family WCLE_RS00555 PF00033 Cytochrome b/b6/petB WCLE_RS00560 PF12344 Ultra-violet resistance protein B WCLE_RS00560 PF17757 UvrB interaction domain WCLE_RS00560 PF04851 Type III restriction enzyme, res subunit WCLE_RS00560 PF00271 Helicase conserved C-terminal domain WCLE_RS00560 PF02151 UvrB/uvrC motif WCLE_RS00565 PF01546 Peptidase family M20/M25/M40 WCLE_RS00565 PF07687 Peptidase dimerisation domain WCLE_RS00570 PF13685 Iron-containing alcohol dehydrogenase WCLE_RS00580 PF17782 DprA winged helix domain WCLE_RS00580 PF02481 DNA recombination-mediator protein A WCLE_RS00585 PF11953 Domain of unknown function (DUF3470) WCLE_RS00585 PF00037 4Fe-4S binding domain WCLE_RS00590 PF01820 D-ala D-ala ligase N-terminus WCLE_RS00590 PF07478 D-ala D-ala ligase C-terminus WCLE_RS00615 PF01551 Peptidase family M23 WCLE_RS00620 PF08264 Anticodon-binding domain of tRNA WCLE_RS00620 PF00133 tRNA synthetases class I (I, L, M and V) WCLE_RS00620 PF09334 tRNA synthetases class I (M) WCLE_RS00620 PF13603 Leucyl-tRNA synthetase, Domain 2 WCLE_RS00650 PF00730 HhH-GPD superfamily base excision DNA repair protein WCLE_RS00650 PF00633 Helix-hairpin-helix motif WCLE_RS00650 PF10576 Iron-sulfur binding domain of endonuclease III WCLE_RS00655 PF18324 Hypothetical protein TT1725 WCLE_RS00655 PF00180 Isocitrate/isopropylmalate dehydrogenase WCLE_RS00690 PF01619 Proline dehydrogenase WCLE_RS00690 PF00171 Aldehyde dehydrogenase family WCLE_RS00690 PF18327 Proline utilization A proline dehydrogenase N-terminal domain WCLE_RS00690 PF14850 DNA-binding domain of Proline dehydrogenase WCLE_RS00705 PF02910 Fumarate reductase flavoprotein C-term WCLE_RS00705 PF00890 FAD binding domain WCLE_RS00750 PF01145 SPFH domain / Band 7 family WCLE_RS00755 PF01145 SPFH domain / Band 7 family WCLE_RS00760 PF13180 PDZ domain WCLE_RS00785 PF12796 Ankyrin repeats (3 copies) WCLE_RS00790 PF08264 Anticodon-binding domain of tRNA WCLE_RS00790 PF09334 tRNA synthetases class I (M) WCLE_RS00800 PF03796 DnaB-like helicase C terminal domain WCLE_RS00800 PF00772 DnaB-like helicase N terminal domain WCLE_RS00810 PF06271 RDD family WCLE_RS00815 PF00580 UvrD/REP helicase N-terminal domain WCLE_RS00815 PF13361 UvrD-like helicase C-terminal domain WCLE_RS00815 PF12705 PD-(D/E)XK nuclease superfamily WCLE_RS00820 PF08544 GHMP kinases C terminal WCLE_RS00820 PF00288 GHMP kinases N terminal domain WCLE_RS00830 PF00950 ABC 3 transport family WCLE_RS00840 PF00692 dUTPase WCLE_RS00850 PF03023 Lipid II flippase MurJ WCLE_RS00880 PF13091 PLD-like domain WCLE_RS00895 PF02091 Glycyl-tRNA synthetase alpha subunit WCLE_RS00900 PF05746 DALR anticodon binding domain WCLE_RS00900 PF02092 Glycyl-tRNA synthetase beta subunit WCLE_RS00905 PF01541 GIY-YIG catalytic domain WCLE_RS00905 PF02151 UvrB/uvrC motif WCLE_RS00905 PF08459 UvrC Helix-hairpin-helix N-terminal WCLE_RS00910 PF17761 DUF1016 N-terminal domain WCLE_RS00910 PF06250 YhcG PDDEXK nuclease domain WCLE_RS00955 PF00490 Delta-aminolevulinic acid dehydratase WCLE_RS00970 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 WCLE_RS00975 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WCLE_RS00980 PF00361 Proton-conducting membrane transporter WCLE_RS00980 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WCLE_RS00985 PF00361 Proton-conducting membrane transporter WCLE_RS00990 PF00361 Proton-conducting membrane transporter WCLE_RS00995 PF03099 Biotin/lipoate A/B protein ligase family WCLE_RS00995 PF02237 Biotin protein ligase C terminal domain WCLE_RS01000 PF03100 CcmE WCLE_RS01005 PF00005 ABC transporter WCLE_RS01010 PF02405 Permease MlaE WCLE_RS01035 PF03900 Porphobilinogen deaminase, C-terminal domain WCLE_RS01035 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain WCLE_RS01040 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WCLE_RS01040 PF01565 FAD binding domain WCLE_RS01050 PF04551 GcpE protein WCLE_RS01055 PF11967 Recombination protein O N terminal WCLE_RS01055 PF02565 Recombination protein O C terminal WCLE_RS01060 PF00164 Ribosomal protein S12/S23 WCLE_RS01065 PF00177 Ribosomal protein S7p/S5e WCLE_RS01070 PF03144 Elongation factor Tu domain 2 WCLE_RS01070 PF00009 Elongation factor Tu GTP binding domain WCLE_RS01070 PF03764 Elongation factor G, domain IV WCLE_RS01070 PF14492 Elongation Factor G, domain II WCLE_RS01070 PF00679 Elongation factor G C-terminus WCLE_RS01075 PF03143 Elongation factor Tu C-terminal domain WCLE_RS01075 PF00009 Elongation factor Tu GTP binding domain WCLE_RS01075 PF03144 Elongation factor Tu domain 2 WCLE_RS01080 PF00338 Ribosomal protein S10p/S20e WCLE_RS01085 PF00297 Ribosomal protein L3 WCLE_RS01090 PF00573 Ribosomal protein L4/L1 family WCLE_RS01095 PF00276 Ribosomal protein L23 WCLE_RS01100 PF03947 Ribosomal Proteins L2, C-terminal domain WCLE_RS01100 PF00181 Ribosomal Proteins L2, RNA binding domain WCLE_RS01105 PF00203 Ribosomal protein S19 WCLE_RS01110 PF00237 Ribosomal protein L22p/L17e WCLE_RS01115 PF00189 Ribosomal protein S3, C-terminal domain WCLE_RS01115 PF07650 KH domain WCLE_RS01120 PF00252 Ribosomal protein L16p/L10e WCLE_RS01125 PF00831 Ribosomal L29 protein WCLE_RS01130 PF00366 Ribosomal protein S17 WCLE_RS01135 PF00238 Ribosomal protein L14p/L23e WCLE_RS01140 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WCLE_RS01145 PF00281 Ribosomal protein L5 WCLE_RS01145 PF00673 ribosomal L5P family C-terminus WCLE_RS01150 PF00253 Ribosomal protein S14p/S29e WCLE_RS01155 PF00410 Ribosomal protein S8 WCLE_RS01160 PF00347 Ribosomal protein L6 WCLE_RS01165 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WCLE_RS01170 PF00333 Ribosomal protein S5, N-terminal domain WCLE_RS01170 PF03719 Ribosomal protein S5, C-terminal domain WCLE_RS01175 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WCLE_RS01180 PF00344 SecY translocase WCLE_RS01190 PF00416 Ribosomal protein S13/S18 WCLE_RS01195 PF00411 Ribosomal protein S11 WCLE_RS01200 PF01000 RNA polymerase Rpb3/RpoA insert domain WCLE_RS01200 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WCLE_RS01200 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WCLE_RS01205 PF01196 Ribosomal protein L17 WCLE_RS01210 PF02021 Uncharacterised protein family UPF0102 WCLE_RS01290 PF00476 DNA polymerase family A WCLE_RS01290 PF01367 5'-3' exonuclease, C-terminal SAM fold WCLE_RS01290 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WCLE_RS01310 PF00115 Cytochrome C and Quinol oxidase polypeptide I WCLE_RS01315 PF02491 SHS2 domain inserted in FTSA WCLE_RS01320 PF01327 Polypeptide deformylase WCLE_RS01325 PF03167 Uracil DNA glycosylase superfamily WCLE_RS01335 PF07690 Major Facilitator Superfamily WCLE_RS01335 PF00083 Sugar (and other) transporter WCLE_RS01340 PF14437 MafB19-like deaminase WCLE_RS01345 PF06418 CTP synthase N-terminus WCLE_RS01345 PF00117 Glutamine amidotransferase class-I WCLE_RS01355 PF04002 RadC-like JAB domain WCLE_RS01370 PF02780 Transketolase, C-terminal domain WCLE_RS01370 PF00364 Biotin-requiring enzyme WCLE_RS01370 PF02779 Transketolase, pyrimidine binding domain WCLE_RS01375 PF03448 MgtE intracellular N domain WCLE_RS01375 PF01769 Divalent cation transporter WCLE_RS01375 PF00571 CBS domain WCLE_RS01380 PF03462 PCRF domain WCLE_RS01380 PF00472 RF-1 domain WCLE_RS01410 PF08543 Phosphomethylpyrimidine kinase WCLE_RS01440 PF10417 C-terminal domain of 1-Cys peroxiredoxin WCLE_RS01440 PF00578 AhpC/TSA family WCLE_RS01445 PF07992 Pyridine nucleotide-disulphide oxidoreductase WCLE_RS01455 PF00589 Phage integrase family WCLE_RS01455 PF02899 Phage integrase, N-terminal SAM-like domain WCLE_RS01460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WCLE_RS01460 PF07992 Pyridine nucleotide-disulphide oxidoreductase WCLE_RS01470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WCLE_RS01470 PF00986 DNA gyrase B subunit, carboxyl terminus WCLE_RS01470 PF01751 Toprim domain WCLE_RS01470 PF00204 DNA gyrase B WCLE_RS01515 PF07992 Pyridine nucleotide-disulphide oxidoreductase WCLE_RS01575 PF00814 Glycoprotease family WCLE_RS01585 PF00596 Class II Aldolase and Adducin N-terminal domain WCLE_RS01600 PF03144 Elongation factor Tu domain 2 WCLE_RS01600 PF00679 Elongation factor G C-terminus WCLE_RS01600 PF00009 Elongation factor Tu GTP binding domain WCLE_RS01610 PF10609 NUBPL iron-transfer P-loop NTPase WCLE_RS01615 PF01494 FAD binding domain WCLE_RS01635 PF00588 SpoU rRNA Methylase family WCLE_RS01635 PF08032 RNA 2'-O ribose methyltransferase substrate binding WCLE_RS01640 PF01027 Inhibitor of apoptosis-promoting Bax1 WCLE_RS01645 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 WCLE_RS01655 PF08245 Mur ligase middle domain WCLE_RS01655 PF02875 Mur ligase family, glutamate ligase domain WCLE_RS01660 PF01053 Cys/Met metabolism PLP-dependent enzyme WCLE_RS01670 PF00012 Hsp70 protein WCLE_RS01675 PF00575 S1 RNA binding domain WCLE_RS01675 PF10150 Ribonuclease E/G family WCLE_RS01675 PF12111 Polyribonucleotide phosphorylase C terminal WCLE_RS01680 PF00471 Ribosomal protein L33 WCLE_RS01705 PF00830 Ribosomal L28 family WCLE_RS01710 PF04055 Radical SAM superfamily WCLE_RS01710 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family WCLE_RS01720 PF00768 D-alanyl-D-alanine carboxypeptidase WCLE_RS01720 PF07943 Penicillin-binding protein 5, C-terminal domain WCLE_RS01735 PF13735 tRNA nucleotidyltransferase domain 2 putative WCLE_RS01735 PF12627 Probable RNA and SrmB- binding site of polymerase A WCLE_RS01735 PF01743 Poly A polymerase head domain WCLE_RS01745 PF01926 50S ribosome-binding GTPase WCLE_RS01745 PF06071 Protein of unknown function (DUF933) WCLE_RS01755 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded WCLE_RS01780 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WCLE_RS01780 PF00391 PEP-utilising enzyme, mobile domain WCLE_RS01780 PF02896 PEP-utilising enzyme, TIM barrel domain WCLE_RS01795 PF01807 CHC2 zinc finger WCLE_RS01795 PF08275 DNA primase catalytic core, N-terminal domain WCLE_RS01795 PF13662 Toprim domain WCLE_RS01800 PF08241 Methyltransferase domain WCLE_RS01825 PF00849 RNA pseudouridylate synthase WCLE_RS01865 PF13567 Domain of unknown function (DUF4131) WCLE_RS01865 PF00753 Metallo-beta-lactamase superfamily WCLE_RS01865 PF03772 Competence protein WCLE_RS01895 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WCLE_RS01900 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WCLE_RS01915 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WCLE_RS01915 PF02142 MGS-like domain WCLE_RS01915 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WCLE_RS01935 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WCLE_RS01935 PF00586 AIR synthase related protein, N-terminal domain WCLE_RS01935 PF02769 AIR synthase related protein, C-terminal domain WCLE_RS01950 PF00035 Double-stranded RNA binding motif WCLE_RS01950 PF14622 Ribonuclease-III-like WCLE_RS01955 PF01180 Dihydroorotate dehydrogenase WCLE_RS01960 PF01039 Carboxyl transferase domain WCLE_RS01975 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain WCLE_RS01975 PF06827 Zinc finger found in FPG and IleRS WCLE_RS01975 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain WCLE_RS01980 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region WCLE_RS01980 PF01243 Pyridoxamine 5'-phosphate oxidase WCLE_RS01990 PF01134 Glucose inhibited division protein A WCLE_RS01990 PF13932 GidA associated domain WCLE_RS01995 PF01321 Creatinase/Prolidase N-terminal domain WCLE_RS01995 PF00557 Metallopeptidase family M24 WCLE_RS02005 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WCLE_RS02005 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WCLE_RS02010 PF02504 Fatty acid synthesis protein WCLE_RS02015 PF01783 Ribosomal L32p protein family WCLE_RS02025 PF01609 Transposase DDE domain WCLE_RS02065 PF03483 B3/4 domain WCLE_RS02065 PF03484 tRNA synthetase B5 domain WCLE_RS02065 PF03147 Ferredoxin-fold anticodon binding domain WCLE_RS02065 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WCLE_RS02065 PF01588 Putative tRNA binding domain WCLE_RS02075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WCLE_RS02075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WCLE_RS02080 PF00902 Sec-independent protein translocase protein (TatC) WCLE_RS02130 PF00692 dUTPase WCLE_RS02135 PF03631 Virulence factor BrkB WCLE_RS02145 PF03144 Elongation factor Tu domain 2 WCLE_RS02145 PF00679 Elongation factor G C-terminus WCLE_RS02145 PF00009 Elongation factor Tu GTP binding domain WCLE_RS02145 PF14492 Elongation Factor G, domain II WCLE_RS02145 PF06421 GTP-binding protein LepA C-terminus WCLE_RS02170 PF03060 Nitronate monooxygenase WCLE_RS02185 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WCLE_RS02205 PF00364 Biotin-requiring enzyme WCLE_RS02205 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WCLE_RS02205 PF02817 e3 binding domain WCLE_RS02225 PF00202 Aminotransferase class-III WCLE_RS02230 PF00571 CBS domain WCLE_RS02230 PF03471 Transporter associated domain WCLE_RS02230 PF01595 Cyclin M transmembrane N-terminal domain WCLE_RS02235 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) WCLE_RS02240 PF02441 Flavoprotein WCLE_RS02245 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WCLE_RS02245 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WCLE_RS02250 PF01522 Polysaccharide deacetylase WCLE_RS02250 PF03422 Carbohydrate binding module (family 6) WCLE_RS02250 PF00457 Glycosyl hydrolases family 11 WCLE_RS02260 PF13613 Helix-turn-helix of DDE superfamily endonuclease WCLE_RS02260 PF13359 DDE superfamily endonuclease WCLE_RS02400 PF00075 RNase H WCLE_RS02405 PF01040 UbiA prenyltransferase family WCLE_RS02410 PF00115 Cytochrome C and Quinol oxidase polypeptide I WCLE_RS02415 PF02790 Cytochrome C oxidase subunit II, transmembrane domain WCLE_RS02415 PF00116 Cytochrome C oxidase subunit II, periplasmic domain WCLE_RS02420 PF00529 HlyD membrane-fusion protein of T1SS WCLE_RS02420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WCLE_RS02440 PF00925 GTP cyclohydrolase II WCLE_RS02440 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WCLE_RS02445 PF03449 Transcription elongation factor, N-terminal WCLE_RS02445 PF01272 Transcription elongation factor, GreA/GreB, C-term WCLE_RS02450 PF00306 ATP synthase alpha/beta chain, C terminal domain WCLE_RS02450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WCLE_RS02450 PF02874 ATP synthase alpha/beta family, beta-barrel domain WCLE_RS02455 PF00213 ATP synthase delta (OSCP) subunit WCLE_RS02465 PF00226 DnaJ domain WCLE_RS02465 PF00684 DnaJ central domain WCLE_RS02465 PF01556 DnaJ C terminal domain WCLE_RS02480 PF13525 Outer membrane lipoprotein WCLE_RS02485 PF01709 Transcriptional regulator WCLE_RS02490 PF01551 Peptidase family M23 WCLE_RS02490 PF08460 Bacterial SH3 domain WCLE_RS02535 PF02646 RmuC family WCLE_RS02605 PF01545 Cation efflux family WCLE_RS02625 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 WCLE_RS02625 PF00953 Glycosyl transferase family 4 WCLE_RS02630 PF01351 Ribonuclease HII WCLE_RS02635 PF02630 SCO1/SenC WCLE_RS02640 PF00929 Exonuclease WCLE_RS02650 PF02556 Preprotein translocase subunit SecB WCLE_RS02660 PF00549 CoA-ligase WCLE_RS02660 PF08442 ATP-grasp domain WCLE_RS02665 PF00549 CoA-ligase WCLE_RS02665 PF02629 CoA binding domain WCLE_RS02670 PF01678 Diaminopimelate epimerase WCLE_RS02680 PF02632 BioY family WCLE_RS02725 PF05088 Bacterial NAD-glutamate dehydrogenase WCLE_RS02730 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WCLE_RS02735 PF01975 Survival protein SurE WCLE_RS02740 PF00533 BRCA1 C Terminus (BRCT) domain WCLE_RS02740 PF01653 NAD-dependent DNA ligase adenylation domain WCLE_RS02740 PF03120 NAD-dependent DNA ligase OB-fold domain WCLE_RS02745 PF02075 Crossover junction endodeoxyribonuclease RuvC WCLE_RS02750 PF00510 Cytochrome c oxidase subunit III WCLE_RS02760 PF03070 TENA/THI-4/PQQC family WCLE_RS02790 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WCLE_RS02790 PF18074 Primosomal protein N C-terminal domain WCLE_RS02790 PF00270 DEAD/DEAH box helicase WCLE_RS02790 PF00271 Helicase conserved C-terminal domain WCLE_RS02790 PF17764 3′ DNA-binding domain (3′BD) WCLE_RS02800 PF13393 Histidyl-tRNA synthetase WCLE_RS02800 PF03129 Anticodon binding domain WCLE_RS02810 PF00684 DnaJ central domain WCLE_RS02810 PF00226 DnaJ domain WCLE_RS02810 PF01556 DnaJ C terminal domain WCLE_RS02815 PF00579 tRNA synthetases class I (W and Y) WCLE_RS02830 PF00293 NUDIX domain WCLE_RS02835 PF01026 TatD related DNase WCLE_RS02840 PF00056 lactate/malate dehydrogenase, NAD binding domain WCLE_RS02840 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WCLE_RS02845 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WCLE_RS02850 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WCLE_RS02855 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 WCLE_RS02860 PF01230 HIT domain WCLE_RS02870 PF01225 Mur ligase family, catalytic domain WCLE_RS02870 PF08245 Mur ligase middle domain WCLE_RS02870 PF02875 Mur ligase family, glutamate ligase domain WCLE_RS02895 PF00005 ABC transporter WCLE_RS02900 PF02416 mttA/Hcf106 family WCLE_RS02905 PF06055 Exopolysaccharide synthesis, ExoD WCLE_RS02910 PF01406 tRNA synthetases class I (C) catalytic domain WCLE_RS02910 PF09190 DALR domain WCLE_RS02925 PF00162 Phosphoglycerate kinase WCLE_RS02930 PF07992 Pyridine nucleotide-disulphide oxidoreductase WCLE_RS02950 PF03462 PCRF domain WCLE_RS02950 PF00472 RF-1 domain WCLE_RS02955 PF01926 50S ribosome-binding GTPase WCLE_RS02960 PF00696 Amino acid kinase family WCLE_RS02965 PF00266 Aminotransferase class-V WCLE_RS02980 PF00749 tRNA synthetases class I (E and Q), catalytic domain WCLE_RS02990 PF18140 Propionyl-coenzyme A carboxylase BT domain WCLE_RS02990 PF02785 Biotin carboxylase C-terminal domain WCLE_RS02990 PF00289 Biotin carboxylase, N-terminal domain WCLE_RS02990 PF00364 Biotin-requiring enzyme WCLE_RS02990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WCLE_RS02995 PF02628 Cytochrome oxidase assembly protein WCLE_RS03015 PF00137 ATP synthase subunit C WCLE_RS03020 PF00119 ATP synthase A chain WCLE_RS03030 PF00398 Ribosomal RNA adenine dimethylase WCLE_RS03040 PF00121 Triosephosphate isomerase WCLE_RS03065 PF03918 Cytochrome C biogenesis protein WCLE_RS03075 PF00111 2Fe-2S iron-sulfur cluster binding domain WCLE_RS03080 PF08245 Mur ligase middle domain WCLE_RS03130 PF01555 DNA methylase WCLE_RS03135 PF01368 DHH family WCLE_RS03135 PF02272 DHHA1 domain WCLE_RS03135 PF17768 RecJ OB domain WCLE_RS03145 PF00034 Cytochrome c WCLE_RS03155 PF10415 Fumarase C C-terminus WCLE_RS03155 PF00206 Lyase WCLE_RS03165 PF00923 Transaldolase/Fructose-6-phosphate aldolase WCLE_RS03175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WCLE_RS03180 PF02874 ATP synthase alpha/beta family, beta-barrel domain WCLE_RS03180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WCLE_RS03185 PF00528 Binding-protein-dependent transport system inner membrane component WCLE_RS03210 PF02867 Ribonucleotide reductase, barrel domain WCLE_RS03210 PF00317 Ribonucleotide reductase, all-alpha domain WCLE_RS03210 PF03477 ATP cone domain WCLE_RS03215 PF03652 Holliday junction resolvase WCLE_RS03230 PF02660 Glycerol-3-phosphate acyltransferase WCLE_RS03235 PF01235 Sodium:alanine symporter family WCLE_RS03245 PF01066 CDP-alcohol phosphatidyltransferase WCLE_RS03250 PF02666 Phosphatidylserine decarboxylase WCLE_RS03255 PF00154 recA bacterial DNA recombination protein WCLE_RS03260 PF01195 Peptidyl-tRNA hydrolase WCLE_RS03265 PF01386 Ribosomal L25p family WCLE_RS03265 PF14693 Ribosomal protein TL5, C-terminal domain WCLE_RS03275 PF01979 Amidohydrolase family WCLE_RS03280 PF09312 SurA N-terminal domain WCLE_RS03280 PF00639 PPIC-type PPIASE domain WCLE_RS03285 PF01926 50S ribosome-binding GTPase WCLE_RS03285 PF10396 GTP-binding protein TrmE N-terminus WCLE_RS03285 PF12631 MnmE helical domain WCLE_RS03310 PF00266 Aminotransferase class-V WCLE_RS03320 PF00829 Ribosomal prokaryotic L21 protein WCLE_RS03325 PF01016 Ribosomal L27 protein WCLE_RS03335 PF02772 S-adenosylmethionine synthetase, central domain WCLE_RS03335 PF02773 S-adenosylmethionine synthetase, C-terminal domain WCLE_RS03335 PF00438 S-adenosylmethionine synthetase, N-terminal domain WCLE_RS03350 PF02511 Thymidylate synthase complementing protein WCLE_RS03355 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WCLE_RS03360 PF00155 Aminotransferase class I and II WCLE_RS03380 PF00464 Serine hydroxymethyltransferase WCLE_RS03400 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WCLE_RS03400 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WCLE_RS03405 PF00675 Insulinase (Peptidase family M16) WCLE_RS03405 PF05193 Peptidase M16 inactive domain WCLE_RS03410 PF00664 ABC transporter transmembrane region WCLE_RS03410 PF00005 ABC transporter WCLE_RS03415 PF00462 Glutaredoxin WCLE_RS03425 PF01515 Phosphate acetyl/butaryl transferase WCLE_RS03425 PF03949 Malic enzyme, NAD binding domain WCLE_RS03425 PF00390 Malic enzyme, N-terminal domain WCLE_RS03430 PF01066 CDP-alcohol phosphatidyltransferase WCLE_RS03450 PF13491 4TM region of DNA translocase FtsK/SpoIIIE WCLE_RS03450 PF17854 FtsK alpha domain WCLE_RS03450 PF01580 FtsK/SpoIIIE family WCLE_RS03450 PF09397 Ftsk gamma domain WCLE_RS03460 PF01208 Uroporphyrinogen decarboxylase (URO-D) WCLE_RS03465 PF03471 Transporter associated domain WCLE_RS03465 PF00571 CBS domain WCLE_RS03480 PF02769 AIR synthase related protein, C-terminal domain WCLE_RS03480 PF00586 AIR synthase related protein, N-terminal domain WCLE_RS03485 PF01259 SAICAR synthetase WCLE_RS03490 PF01746 tRNA (Guanine-1)-methyltransferase WCLE_RS03495 PF01245 Ribosomal protein L19 WCLE_RS03500 PF00528 Binding-protein-dependent transport system inner membrane component WCLE_RS03535 PF00749 tRNA synthetases class I (E and Q), catalytic domain WCLE_RS03545 PF13717 zinc-ribbon domain WCLE_RS03550 PF14602 Hexapeptide repeat of succinyl-transferase WCLE_RS03550 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal WCLE_RS03550 PF00132 Bacterial transferase hexapeptide (six repeats) WCLE_RS03570 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WCLE_RS03570 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit WCLE_RS03570 PF10531 SLBB domain WCLE_RS03580 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WCLE_RS03580 PF12706 Beta-lactamase superfamily domain WCLE_RS03580 PF17770 Ribonuclease J C-terminal domain WCLE_RS03585 PF04052 TolB amino-terminal domain WCLE_RS03585 PF07676 WD40-like Beta Propeller Repeat WCLE_RS03600 PF01795 MraW methylase family WCLE_RS03605 PF00083 Sugar (and other) transporter WCLE_RS03625 PF01176 Translation initiation factor 1A / IF-1 WCLE_RS03630 PF02545 Maf-like protein WCLE_RS03675 PF00448 SRP54-type protein, GTPase domain WCLE_RS03675 PF02881 SRP54-type protein, helical bundle domain WCLE_RS03675 PF02978 Signal peptide binding domain WCLE_RS03725 PF00892 EamA-like transporter family WCLE_RS03730 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WCLE_RS03730 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WCLE_RS03730 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WCLE_RS03745 PF01235 Sodium:alanine symporter family WCLE_RS03755 PF00118 TCP-1/cpn60 chaperonin family WCLE_RS03760 PF00166 Chaperonin 10 Kd subunit WCLE_RS03770 PF01098 Cell cycle protein WCLE_RS03775 PF01209 ubiE/COQ5 methyltransferase family WCLE_RS03785 PF07690 Major Facilitator Superfamily WCLE_RS03790 PF02780 Transketolase, C-terminal domain WCLE_RS03790 PF02779 Transketolase, pyrimidine binding domain WCLE_RS03790 PF00456 Transketolase, thiamine diphosphate binding domain WCLE_RS03795 PF00163 Ribosomal protein S4/S9 N-terminal domain WCLE_RS03795 PF01479 S4 domain WCLE_RS03805 PF04384 Iron-sulphur cluster assembly WCLE_RS03815 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WCLE_RS03815 PF01872 RibD C-terminal domain WCLE_RS03820 PF13286 Phosphohydrolase-associated domain WCLE_RS03820 PF01966 HD domain WCLE_RS03825 PF01521 Iron-sulphur cluster biosynthesis WCLE_RS03830 PF00005 ABC transporter WCLE_RS03835 PF02129 X-Pro dipeptidyl-peptidase (S15 family) WCLE_RS03840 PF00266 Aminotransferase class-V WCLE_RS03860 PF00005 ABC transporter WCLE_RS03875 PF02938 GAD domain WCLE_RS03875 PF01336 OB-fold nucleic acid binding domain WCLE_RS03875 PF00152 tRNA synthetases class II (D, K and N) WCLE_RS03880 PF00083 Sugar (and other) transporter WCLE_RS03880 PF08946 Osmosensory transporter coiled coil WCLE_RS03885 PF00707 Translation initiation factor IF-3, C-terminal domain WCLE_RS03885 PF05198 Translation initiation factor IF-3, N-terminal domain WCLE_RS03890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WCLE_RS03890 PF03129 Anticodon binding domain WCLE_RS03890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WCLE_RS03895 PF01380 SIS domain WCLE_RS03900 PF02699 Preprotein translocase subunit WCLE_RS03905 PF00488 MutS domain V WCLE_RS03905 PF05190 MutS family domain IV WCLE_RS03905 PF05192 MutS domain III WCLE_RS03905 PF05188 MutS domain II WCLE_RS03905 PF01624 MutS domain I WCLE_RS03910 PF00570 HRDC domain WCLE_RS03910 PF01612 3'-5' exonuclease WCLE_RS03915 PF01121 Dephospho-CoA kinase WCLE_RS03950 PF10502 Signal peptidase, peptidase S26 WCLE_RS03955 PF00012 Hsp70 protein WCLE_RS03960 PF00012 Hsp70 protein WCLE_RS03965 PF00226 DnaJ domain WCLE_RS03965 PF07743 HSCB C-terminal oligomerisation domain WCLE_RS03970 PF01521 Iron-sulphur cluster biosynthesis WCLE_RS03975 PF01592 NifU-like N terminal domain WCLE_RS03980 PF00448 SRP54-type protein, GTPase domain WCLE_RS03980 PF02881 SRP54-type protein, helical bundle domain WCLE_RS03985 PF18073 Rubredoxin metal binding domain WCLE_RS03990 PF00107 Zinc-binding dehydrogenase WCLE_RS03990 PF08659 KR domain WCLE_RS03990 PF00109 Beta-ketoacyl synthase, N-terminal domain WCLE_RS03990 PF16197 Ketoacyl-synthetase C-terminal extension WCLE_RS03990 PF00698 Acyl transferase domain WCLE_RS03990 PF00550 Phosphopantetheine attachment site WCLE_RS03990 PF14765 Polyketide synthase dehydratase WCLE_RS03990 PF02801 Beta-ketoacyl synthase, C-terminal domain WCLE_RS03990 PF08240 Alcohol dehydrogenase GroES-like domain WCLE_RS04000 PF00684 DnaJ central domain WCLE_RS04000 PF00226 DnaJ domain WCLE_RS04000 PF01556 DnaJ C terminal domain WCLE_RS04010 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal WCLE_RS04010 PF00355 Rieske [2Fe-2S] domain WCLE_RS04015 PF00521 DNA gyrase/topoisomerase IV, subunit A WCLE_RS04015 PF03989 DNA gyrase C-terminal domain, beta-propeller WCLE_RS04035 PF04452 RNA methyltransferase WCLE_RS04045 PF00270 DEAD/DEAH box helicase WCLE_RS04045 PF00271 Helicase conserved C-terminal domain WCLE_RS04050 PF00313 'Cold-shock' DNA-binding domain WCLE_RS04055 PF01523 Putative modulator of DNA gyrase WCLE_RS04060 PF00231 ATP synthase WCLE_RS04090 PF00580 UvrD/REP helicase N-terminal domain WCLE_RS04090 PF13361 UvrD-like helicase C-terminal domain WCLE_RS04100 PF00085 Thioredoxin WCLE_RS04135 PF02779 Transketolase, pyrimidine binding domain WCLE_RS04135 PF16870 2-oxoglutarate dehydrogenase C-terminal WCLE_RS04135 PF00676 Dehydrogenase E1 component WCLE_RS04135 PF16078 2-oxoglutarate dehydrogenase N-terminus WCLE_RS04175 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase WCLE_RS04185 PF01578 Cytochrome C assembly protein WCLE_RS04195 PF01029 NusB family WCLE_RS04200 PF00885 6,7-dimethyl-8-ribityllumazine synthase WCLE_RS04205 PF14849 YidC periplasmic domain WCLE_RS04205 PF02096 60Kd inner membrane protein WCLE_RS04215 PF02355 Protein export membrane protein WCLE_RS04215 PF07549 SecD/SecF GG Motif WCLE_RS04220 PF09225 Restriction endonuclease PvuII WCLE_RS04240 PF01555 DNA methylase WCLE_RS04255 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal WCLE_RS04255 PF01578 Cytochrome C assembly protein WCLE_RS04280 PF17827 PrmC N-terminal domain WCLE_RS04280 PF02390 Putative methyltransferase WCLE_RS04280 PF05175 Methyltransferase small domain WCLE_RS04305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WCLE_RS04305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WCLE_RS04375 PF01409 tRNA synthetases class II core domain (F) WCLE_RS04375 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WCLE_RS04380 PF14602 Hexapeptide repeat of succinyl-transferase WCLE_RS04380 PF12804 MobA-like NTP transferase domain WCLE_RS04380 PF00132 Bacterial transferase hexapeptide (six repeats) WCLE_RS04465 PF00202 Aminotransferase class-III WCLE_RS04475 PF13847 Methyltransferase domain WCLE_RS04485 PF00155 Aminotransferase class I and II WCLE_RS04490 PF04055 Radical SAM superfamily WCLE_RS04490 PF06968 Biotin and Thiamin Synthesis associated domain WCLE_RS04495 PF02222 ATP-grasp domain WCLE_RS04495 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain WCLE_RS04500 PF04379 ApaG domain WCLE_RS04505 PF00528 Binding-protein-dependent transport system inner membrane component WCLE_RS04510 PF17773 UPF0176 acylphosphatase like domain WCLE_RS04510 PF00581 Rhodanese-like domain WCLE_RS04530 PF17755 UvrA DNA-binding domain WCLE_RS04530 PF17760 UvrA interaction domain WCLE_RS04550 PF01176 Translation initiation factor 1A / IF-1 WCLE_RS04555 PF02545 Maf-like protein WCLE_RS04590 PF12169 DNA polymerase III subunits gamma and tau domain III WCLE_RS04595 PF01300 Telomere recombination WCLE_RS04615 PF01791 DeoC/LacD family aldolase WCLE_RS04640 PF12838 4Fe-4S dicluster domain WCLE_RS04650 PF00575 S1 RNA binding domain WCLE_RS04650 PF13184 NusA-like KH domain WCLE_RS04650 PF08529 NusA N-terminal domain WCLE_RS04655 PF00009 Elongation factor Tu GTP binding domain WCLE_RS04655 PF11987 Translation-initiation factor 2 WCLE_RS04655 PF04760 Translation initiation factor IF-2, N-terminal region WCLE_RS04660 PF02033 Ribosome-binding factor A WCLE_RS04665 PF01040 UbiA prenyltransferase family WCLE_RS04675 PF01098 Cell cycle protein WCLE_RS04680 PF00361 Proton-conducting membrane transporter WCLE_RS04700 PF00183 Hsp90 protein WCLE_RS04710 PF00155 Aminotransferase class I and II WCLE_RS04720 PF01132 Elongation factor P (EF-P) OB domain WCLE_RS04720 PF09285 Elongation factor P, C-terminal WCLE_RS04720 PF08207 Elongation factor P (EF-P) KOW-like domain WCLE_RS04725 PF01782 RimM N-terminal domain WCLE_RS04725 PF05239 PRC-barrel domain WCLE_RS04750 PF00216 Bacterial DNA-binding protein WCLE_RS04755 PF13411 MerR HTH family regulatory protein WCLE_RS04780 PF01632 Ribosomal protein L35 WCLE_RS04785 PF00453 Ribosomal protein L20 WCLE_RS04790 PF00551 Formyl transferase WCLE_RS04790 PF02911 Formyl transferase, C-terminal domain WCLE_RS04800 PF00117 Glutamine amidotransferase class-I WCLE_RS04800 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WCLE_RS04815 PF03144 Elongation factor Tu domain 2 WCLE_RS04815 PF03143 Elongation factor Tu C-terminal domain WCLE_RS04815 PF00009 Elongation factor Tu GTP binding domain WCLE_RS04830 PF02357 Transcription termination factor nusG WCLE_RS04830 PF00467 KOW motif WCLE_RS04835 PF00298 Ribosomal protein L11, RNA binding domain WCLE_RS04835 PF03946 Ribosomal protein L11, N-terminal domain WCLE_RS04840 PF00687 Ribosomal protein L1p/L10e family WCLE_RS04845 PF00466 Ribosomal protein L10 WCLE_RS04850 PF16320 Ribosomal protein L7/L12 dimerisation domain WCLE_RS04850 PF00542 Ribosomal protein L7/L12 C-terminal domain WCLE_RS04865 PF03979 Sigma-70 factor, region 1.1 WCLE_RS04865 PF04546 Sigma-70, non-essential region WCLE_RS04865 PF00140 Sigma-70 factor, region 1.2 WCLE_RS04865 PF04542 Sigma-70 region 2 WCLE_RS04865 PF04539 Sigma-70 region 3 WCLE_RS04865 PF04545 Sigma-70, region 4 WCLE_RS04870 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WCLE_RS04880 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WCLE_RS04880 PF13244 Domain of unknown function (DUF4040) WCLE_RS04880 PF00361 Proton-conducting membrane transporter WCLE_RS04885 PF03334 Na+/H+ antiporter subunit WCLE_RS04895 PF01192 RNA polymerase Rpb6 WCLE_RS04915 PF00731 AIR carboxylase WCLE_RS04920 PF01119 DNA mismatch repair protein, C-terminal domain WCLE_RS04920 PF08676 MutL C terminal dimerisation domain WCLE_RS04960 PF02463 RecF/RecN/SMC N terminal domain WCLE_RS04965 PF00578 AhpC/TSA family WCLE_RS04975 PF00202 Aminotransferase class-III WCLE_RS04995 PF01467 Cytidylyltransferase-like WCLE_RS05010 PF01255 Putative undecaprenyl diphosphate synthase WCLE_RS05015 PF01765 Ribosome recycling factor WCLE_RS05020 PF00696 Amino acid kinase family WCLE_RS05025 PF00889 Elongation factor TS WCLE_RS05030 PF00318 Ribosomal protein S2 WCLE_RS05060 PF17676 LD-carboxypeptidase C-terminal domain WCLE_RS05060 PF02016 LD-carboxypeptidase N-terminal domain WCLE_RS05065 PF03099 Biotin/lipoate A/B protein ligase family WCLE_RS05070 PF04860 Phage portal protein WCLE_RS05085 PF00712 DNA polymerase III beta subunit, N-terminal domain WCLE_RS05085 PF02768 DNA polymerase III beta subunit, C-terminal domain WCLE_RS05085 PF02767 DNA polymerase III beta subunit, central domain WCLE_RS05090 PF01416 tRNA pseudouridine synthase WCLE_RS05110 PF00677 Lumazine binding domain WCLE_RS05140 PF01668 SmpB protein WCLE_RS05145 PF01790 Prolipoprotein diacylglyceryl transferase WCLE_RS05170 PF01425 Amidase WCLE_RS05180 PF00109 Beta-ketoacyl synthase, N-terminal domain WCLE_RS05180 PF02801 Beta-ketoacyl synthase, C-terminal domain WCLE_RS05185 PF00550 Phosphopantetheine attachment site WCLE_RS05190 PF00348 Polyprenyl synthetase WCLE_RS05200 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WCLE_RS05200 PF13244 Domain of unknown function (DUF4040) WCLE_RS05200 PF00361 Proton-conducting membrane transporter WCLE_RS05295 PF13520 Amino acid permease WCLE_RS05305 PF02142 MGS-like domain WCLE_RS05305 PF01808 AICARFT/IMPCHase bienzyme WCLE_RS05325 PF02401 LytB protein WCLE_RS05330 PF03717 Penicillin-binding Protein dimerisation domain WCLE_RS05330 PF00905 Penicillin binding protein transpeptidase domain WCLE_RS05340 PF00210 Ferritin-like domain WCLE_RS05350 PF00999 Sodium/hydrogen exchanger family WCLE_RS05350 PF02254 TrkA-N domain WCLE_RS05360 PF02223 Thymidylate kinase WCLE_RS05375 PF01921 tRNA synthetases class I (K) WCLE_RS05385 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WCLE_RS05390 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WCLE_RS05400 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WCLE_RS05405 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WCLE_RS05415 PF00557 Metallopeptidase family M24 WCLE_RS05425 PF02774 Semialdehyde dehydrogenase, dimerisation domain WCLE_RS05425 PF01118 Semialdehyde dehydrogenase, NAD binding domain WCLE_RS05435 PF07992 Pyridine nucleotide-disulphide oxidoreductase WCLE_RS05440 PF07977 FabA-like domain WCLE_RS05450 PF01103 Surface antigen WCLE_RS05450 PF07244 Surface antigen variable number repeat WCLE_RS05455 PF17820 PDZ domain WCLE_RS05455 PF02163 Peptidase family M50 WCLE_RS05475 PF01926 50S ribosome-binding GTPase WCLE_RS05475 PF07650 KH domain WCLE_RS05515 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WCLE_RS05515 PF14572 Phosphoribosyl synthetase-associated domain WCLE_RS05525 PF00919 Uncharacterized protein family UPF0004 WCLE_RS05525 PF04055 Radical SAM superfamily WCLE_RS05535 PF03958 Bacterial type II/III secretion system short domain WCLE_RS05535 PF00263 Bacterial type II and III secretion system protein WCLE_RS05565 PF00701 Dihydrodipicolinate synthetase family WCLE_RS05570 PF00436 Single-strand binding protein family WCLE_RS05605 PF02687 FtsX-like permease family WCLE_RS05605 PF12704 MacB-like periplasmic core domain WCLE_RS05610 PF02934 GatB/GatE catalytic domain WCLE_RS05610 PF02637 GatB domain WCLE_RS05615 PF07497 Rho termination factor, RNA-binding domain WCLE_RS05615 PF07498 Rho termination factor, N-terminal domain WCLE_RS05615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WCLE_RS05635 PF00814 Glycoprotease family WCLE_RS05640 PF00005 ABC transporter WCLE_RS05640 PF00664 ABC transporter transmembrane region WCLE_RS05645 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WCLE_RS05645 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WCLE_RS05645 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WCLE_RS05645 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WCLE_RS05655 PF02542 YgbB family WCLE_RS05655 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WCLE_RS05660 PF00101 Ribulose bisphosphate carboxylase, small chain WCLE_RS05660 PF00132 Bacterial transferase hexapeptide (six repeats) WCLE_RS05680 PF00133 tRNA synthetases class I (I, L, M and V) WCLE_RS05680 PF08264 Anticodon-binding domain of tRNA WCLE_RS05690 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WCLE_RS05710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WCLE_RS05710 PF00364 Biotin-requiring enzyme WCLE_RS05710 PF02817 e3 binding domain WCLE_RS05725 PF03618 Kinase/pyrophosphorylase WCLE_RS05740 PF00883 Cytosol aminopeptidase family, catalytic domain WCLE_RS05740 PF02789 Cytosol aminopeptidase family, N-terminal domain WCLE_RS05755 PF00625 Guanylate kinase WCLE_RS05775 PF00719 Inorganic pyrophosphatase WCLE_RS05780 PF03232 Ubiquinone biosynthesis protein COQ7 WCLE_RS05790 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WCLE_RS05790 PF01926 50S ribosome-binding GTPase WCLE_RS05815 PF05746 DALR anticodon binding domain WCLE_RS05815 PF03485 Arginyl tRNA synthetase N terminal domain WCLE_RS05815 PF00750 tRNA synthetases class I (R) WCLE_RS05860 PF01555 DNA methylase WCLE_RS05880 PF17864 RuvB AAA lid domain WCLE_RS05880 PF05491 RuvB C-terminal winged helix domain WCLE_RS05880 PF05496 Holliday junction DNA helicase RuvB P-loop domain WCLE_RS05885 PF01330 RuvA N terminal domain WCLE_RS05885 PF07499 RuvA, C-terminal domain WCLE_RS05890 PF03330 Lytic transglycolase WCLE_RS05895 PF08245 Mur ligase middle domain WCLE_RS05895 PF01225 Mur ligase family, catalytic domain WCLE_RS05895 PF02875 Mur ligase family, glutamate ligase domain WCLE_RS05900 PF03952 Enolase, N-terminal domain WCLE_RS05900 PF00113 Enolase, C-terminal TIM barrel domain WCLE_RS05905 PF01926 50S ribosome-binding GTPase WCLE_RS05905 PF01018 GTP1/OBG WCLE_RS05930 PF01509 TruB family pseudouridylate synthase (N terminal domain) WCLE_RS05930 PF16198 tRNA pseudouridylate synthase B C-terminal domain WCLE_RS05935 PF00312 Ribosomal protein S15 WCLE_RS05940 PF00575 S1 RNA binding domain WCLE_RS05940 PF00013 KH domain WCLE_RS05940 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WCLE_RS05940 PF01138 3' exoribonuclease family, domain 1 WCLE_RS05940 PF03725 3' exoribonuclease family, domain 2 WCLE_RS05945 PF00834 Ribulose-phosphate 3 epimerase family WCLE_RS05970 PF00004 ATPase family associated with various cellular activities (AAA) WCLE_RS05970 PF05362 Lon protease (S16) C-terminal proteolytic domain WCLE_RS05970 PF02190 ATP-dependent protease La (LON) substrate-binding domain WCLE_RS05975 PF10431 C-terminal, D2-small domain, of ClpB protein WCLE_RS05975 PF07724 AAA domain (Cdc48 subfamily) WCLE_RS05975 PF06689 ClpX C4-type zinc finger WCLE_RS05980 PF00574 Clp protease WCLE_RS05985 PF05697 Bacterial trigger factor protein (TF) WCLE_RS05985 PF05698 Bacterial trigger factor protein (TF) C-terminus WCLE_RS05985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WCLE_RS05995 PF04972 BON domain WCLE_RS06000 PF02951 Prokaryotic glutathione synthetase, N-terminal domain WCLE_RS06000 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain WCLE_RS06005 PF04101 Glycosyltransferase family 28 C-terminal domain WCLE_RS06005 PF03033 Glycosyltransferase family 28 N-terminal domain WCLE_RS06015 PF07992 Pyridine nucleotide-disulphide oxidoreductase WCLE_RS06015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WCLE_RS06020 PF00575 S1 RNA binding domain WCLE_RS06025 PF00216 Bacterial DNA-binding protein WCLE_RS06060 PF01513 ATP-NAD kinase WCLE_RS06065 PF01197 Ribosomal protein L31 WCLE_RS06070 PF00698 Acyl transferase domain WCLE_RS06080 PF06415 BPG-independent PGAM N-terminus (iPGM_N) WCLE_RS06080 PF01676 Metalloenzyme superfamily WCLE_RS06110 PF03070 TENA/THI-4/PQQC family WCLE_RS06120 PF00809 Pterin binding enzyme WCLE_RS06120 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) WCLE_RS06125 PF00186 Dihydrofolate reductase WCLE_RS06150 PF13537 Glutamine amidotransferase domain WCLE_RS06150 PF00156 Phosphoribosyl transferase domain WCLE_RS06180 PF00551 Formyl transferase WCLE_RS06190 PF05193 Peptidase M16 inactive domain WCLE_RS06190 PF00675 Insulinase (Peptidase family M16) WCLE_RS06195 PF01252 Signal peptidase (SPase) II WCLE_RS06200 PF01687 Riboflavin kinase WCLE_RS06200 PF06574 FAD synthetase WCLE_RS06205 PF00462 Glutaredoxin WCLE_RS06215 PF02245 Methylpurine-DNA glycosylase (MPG) WCLE_RS06235 PF01131 DNA topoisomerase WCLE_RS06235 PF01751 Toprim domain WCLE_RS06235 PF13368 Topoisomerase C-terminal repeat WCLE_RS06235 PF01396 Topoisomerase DNA binding C4 zinc finger WCLE_RS06245 PF01207 Dihydrouridine synthase (Dus) WCLE_RS06255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WCLE_RS06255 PF02403 Seryl-tRNA synthetase N-terminal domain WCLE_RS06260 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WCLE_RS06260 PF02844 Phosphoribosylglycinamide synthetase, N domain WCLE_RS06260 PF02843 Phosphoribosylglycinamide synthetase, C domain WCLE_RS06270 PF00958 GMP synthase C terminal domain WCLE_RS06270 PF00117 Glutamine amidotransferase class-I WCLE_RS06270 PF02540 NAD synthase WCLE_RS06285 PF02132 RecR protein WCLE_RS06285 PF13662 Toprim domain WCLE_RS06310 PF00579 tRNA synthetases class I (W and Y) WCLE_RS06320 PF01025 GrpE WCLE_RS06325 PF00348 Polyprenyl synthetase WCLE_RS06330 PF00886 Ribosomal protein S16 WCLE_RS06335 PF01648 4'-phosphopantetheinyl transferase superfamily WCLE_RS06340 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WCLE_RS06340 PF03129 Anticodon binding domain WCLE_RS06350 PF03717 Penicillin-binding Protein dimerisation domain WCLE_RS06350 PF00905 Penicillin binding protein transpeptidase domain WCLE_RS06375 PF00691 OmpA family WCLE_RS06380 PF01171 PP-loop family WCLE_RS06385 PF17862 AAA+ lid domain WCLE_RS06385 PF01434 Peptidase family M41 WCLE_RS06385 PF06480 FtsH Extracellular WCLE_RS06385 PF00004 ATPase family associated with various cellular activities (AAA) WCLE_RS06420 PF07516 SecA Wing and Scaffold domain WCLE_RS06420 PF01043 SecA preprotein cross-linking domain WCLE_RS06420 PF07517 SecA DEAD-like domain WCLE_RS06420 PF02810 SEC-C motif WCLE_RS06435 PF00268 Ribonucleotide reductase, small chain WCLE_RS06445 PF00919 Uncharacterized protein family UPF0004 WCLE_RS06445 PF01938 TRAM domain WCLE_RS06445 PF04055 Radical SAM superfamily WCLE_RS06450 PF08264 Anticodon-binding domain of tRNA WCLE_RS06450 PF00133 tRNA synthetases class I (I, L, M and V) WCLE_RS06485 PF01411 tRNA synthetases class II (A) WCLE_RS06485 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WCLE_RS06495 PF02811 PHP domain WCLE_RS06495 PF07733 Bacterial DNA polymerase III alpha NTPase domain WCLE_RS06495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WCLE_RS06495 PF14579 Helix-hairpin-helix motif WCLE_RS06500 PF01250 Ribosomal protein S6 WCLE_RS06505 PF01084 Ribosomal protein S18 WCLE_RS06510 PF01281 Ribosomal protein L9, N-terminal domain WCLE_RS06510 PF03948 Ribosomal protein L9, C-terminal domain WCLE_RS06535 PF00146 NADH dehydrogenase WCLE_RS06540 PF00384 Molybdopterin oxidoreductase WCLE_RS06540 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal WCLE_RS06540 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WCLE_RS06550 PF00709 Adenylosuccinate synthetase WCLE_RS06565 PF00120 Glutamine synthetase, catalytic domain WCLE_RS06585 PF07690 Major Facilitator Superfamily WCLE_RS06590 PF01556 DnaJ C terminal domain WCLE_RS06590 PF00684 DnaJ central domain WCLE_RS06590 PF00226 DnaJ domain WCLE_RS06715 PF09225 Restriction endonuclease PvuII WCLE_RS06755 PF00623 RNA polymerase Rpb1, domain 2 WCLE_RS06755 PF10385 RNA polymerase beta subunit external 1 domain WCLE_RS06755 PF04560 RNA polymerase Rpb2, domain 7 WCLE_RS06755 PF04997 RNA polymerase Rpb1, domain 1 WCLE_RS06755 PF04983 RNA polymerase Rpb1, domain 3 WCLE_RS06755 PF05000 RNA polymerase Rpb1, domain 4 WCLE_RS06755 PF00562 RNA polymerase Rpb2, domain 6 WCLE_RS06755 PF04563 RNA polymerase beta subunit WCLE_RS06755 PF04561 RNA polymerase Rpb2, domain 2 WCLE_RS06755 PF04565 RNA polymerase Rpb2, domain 3 WCLE_RS06755 PF04998 RNA polymerase Rpb1, domain 5 WCLE_RS06760 PF04560 RNA polymerase Rpb2, domain 7 WCLE_RS06760 PF00562 RNA polymerase Rpb2, domain 6 WCLE_RS06760 PF04565 RNA polymerase Rpb2, domain 3 WCLE_RS06760 PF04561 RNA polymerase Rpb2, domain 2 WCLE_RS06760 PF04563 RNA polymerase beta subunit WCLE_RS06760 PF04998 RNA polymerase Rpb1, domain 5 WCLE_RS06760 PF05000 RNA polymerase Rpb1, domain 4 WCLE_RS06760 PF04983 RNA polymerase Rpb1, domain 3 WCLE_RS06760 PF00623 RNA polymerase Rpb1, domain 2 WCLE_RS06760 PF04997 RNA polymerase Rpb1, domain 1 WCLE_RS06760 PF10385 RNA polymerase beta subunit external 1 domain