locus-tag class description WD_RS00015 PF08299 Bacterial dnaA protein helix-turn-helix WD_RS00015 PF00308 Bacterial dnaA protein WD_RS00015 PF11638 DnaA N-terminal domain WD_RS00030 PF00925 GTP cyclohydrolase II WD_RS00035 PF04335 VirB8 protein WD_RS00050 PF00437 Type II/IV secretion system protein WD_RS00055 PF02534 Type IV secretory system Conjugative DNA transfer WD_RS00065 PF13847 Methyltransferase domain WD_RS00065 PF17827 PrmC N-terminal domain WD_RS00070 PF00164 Ribosomal protein S12/S23 WD_RS00075 PF00177 Ribosomal protein S7p/S5e WD_RS00080 PF00679 Elongation factor G C-terminus WD_RS00080 PF14492 Elongation Factor G, domain II WD_RS00080 PF03764 Elongation factor G, domain IV WD_RS00080 PF00009 Elongation factor Tu GTP binding domain WD_RS00080 PF03144 Elongation factor Tu domain 2 WD_RS00085 PF03143 Elongation factor Tu C-terminal domain WD_RS00085 PF00009 Elongation factor Tu GTP binding domain WD_RS00085 PF03144 Elongation factor Tu domain 2 WD_RS00100 PF00467 KOW motif WD_RS00100 PF02357 Transcription termination factor nusG WD_RS00105 PF03946 Ribosomal protein L11, N-terminal domain WD_RS00105 PF00298 Ribosomal protein L11, RNA binding domain WD_RS00110 PF00687 Ribosomal protein L1p/L10e family WD_RS00115 PF00466 Ribosomal protein L10 WD_RS00120 PF00542 Ribosomal protein L7/L12 C-terminal domain WD_RS00120 PF16320 Ribosomal protein L7/L12 dimerisation domain WD_RS00125 PF04998 RNA polymerase Rpb1, domain 5 WD_RS00125 PF00623 RNA polymerase Rpb1, domain 2 WD_RS00125 PF04560 RNA polymerase Rpb2, domain 7 WD_RS00125 PF00562 RNA polymerase Rpb2, domain 6 WD_RS00125 PF10385 RNA polymerase beta subunit external 1 domain WD_RS00125 PF04565 RNA polymerase Rpb2, domain 3 WD_RS00125 PF04561 RNA polymerase Rpb2, domain 2 WD_RS00125 PF04983 RNA polymerase Rpb1, domain 3 WD_RS00125 PF05000 RNA polymerase Rpb1, domain 4 WD_RS00125 PF04563 RNA polymerase beta subunit WD_RS00125 PF04997 RNA polymerase Rpb1, domain 1 WD_RS00130 PF04997 RNA polymerase Rpb1, domain 1 WD_RS00130 PF05000 RNA polymerase Rpb1, domain 4 WD_RS00130 PF04998 RNA polymerase Rpb1, domain 5 WD_RS00130 PF04563 RNA polymerase beta subunit WD_RS00130 PF04561 RNA polymerase Rpb2, domain 2 WD_RS00130 PF04565 RNA polymerase Rpb2, domain 3 WD_RS00130 PF04983 RNA polymerase Rpb1, domain 3 WD_RS00130 PF10385 RNA polymerase beta subunit external 1 domain WD_RS00130 PF04560 RNA polymerase Rpb2, domain 7 WD_RS00130 PF00562 RNA polymerase Rpb2, domain 6 WD_RS00130 PF00623 RNA polymerase Rpb1, domain 2 WD_RS00135 PF01207 Dihydrouridine synthase (Dus) WD_RS00145 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WD_RS00145 PF02403 Seryl-tRNA synthetase N-terminal domain WD_RS00150 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WD_RS00150 PF02843 Phosphoribosylglycinamide synthetase, C domain WD_RS00150 PF02844 Phosphoribosylglycinamide synthetase, N domain WD_RS00170 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WD_RS00170 PF14572 Phosphoribosyl synthetase-associated domain WD_RS00175 PF02686 Glu-tRNAGln amidotransferase C subunit WD_RS00180 PF04052 TolB amino-terminal domain WD_RS00180 PF07676 WD40-like Beta Propeller Repeat WD_RS00185 PF12706 Beta-lactamase superfamily domain WD_RS00185 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WD_RS00185 PF17770 Ribonuclease J C-terminal domain WD_RS00190 PF00684 DnaJ central domain WD_RS00190 PF01556 DnaJ C terminal domain WD_RS00190 PF00226 DnaJ domain WD_RS00255 PF00883 Cytosol aminopeptidase family, catalytic domain WD_RS00255 PF02789 Cytosol aminopeptidase family, N-terminal domain WD_RS00265 PF00216 Bacterial DNA-binding protein WD_RS00275 PF01551 Peptidase family M23 WD_RS00280 PF00133 tRNA synthetases class I (I, L, M and V) WD_RS00280 PF08264 Anticodon-binding domain of tRNA WD_RS00280 PF09334 tRNA synthetases class I (M) WD_RS00280 PF13603 Leucyl-tRNA synthetase, Domain 2 WD_RS00300 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ WD_RS00310 PF00380 Ribosomal protein S9/S16 WD_RS00315 PF00572 Ribosomal protein L13 WD_RS00325 PF10691 Protein of unknown function (DUF2497) WD_RS00330 PF01728 FtsJ-like methyltransferase WD_RS00390 PF02355 Protein export membrane protein WD_RS00400 PF00571 CBS domain WD_RS00400 PF00478 IMP dehydrogenase / GMP reductase domain WD_RS00405 PF00398 Ribosomal RNA adenine dimethylase WD_RS00415 PF00121 Triosephosphate isomerase WD_RS00420 PF02481 DNA recombination-mediator protein A WD_RS00420 PF17782 DprA winged helix domain WD_RS00425 PF00037 4Fe-4S binding domain WD_RS00425 PF11953 Domain of unknown function (DUF3470) WD_RS00435 PF01820 D-ala D-ala ligase N-terminus WD_RS00435 PF07478 D-ala D-ala ligase C-terminus WD_RS00440 PF08478 POTRA domain, FtsQ-type WD_RS00440 PF03799 Cell division protein FtsQ WD_RS00445 PF00768 D-alanyl-D-alanine carboxypeptidase WD_RS00445 PF07943 Penicillin-binding protein 5, C-terminal domain WD_RS00450 PF00893 Small Multidrug Resistance protein WD_RS00455 PF00893 Small Multidrug Resistance protein WD_RS00470 PF18327 Proline utilization A proline dehydrogenase N-terminal domain WD_RS00470 PF14850 DNA-binding domain of Proline dehydrogenase WD_RS00470 PF00171 Aldehyde dehydrogenase family WD_RS00470 PF01619 Proline dehydrogenase WD_RS00475 PF00694 Aconitase C-terminal domain WD_RS00475 PF00330 Aconitase family (aconitate hydratase) WD_RS00480 PF02556 Preprotein translocase subunit SecB WD_RS00490 PF00929 Exonuclease WD_RS00495 PF02630 SCO1/SenC WD_RS00500 PF00986 DNA gyrase B subunit, carboxyl terminus WD_RS00500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WD_RS00500 PF00204 DNA gyrase B WD_RS00500 PF01751 Toprim domain WD_RS00520 PF01609 Transposase DDE domain WD_RS00525 PF04551 GcpE protein WD_RS00540 PF01580 FtsK/SpoIIIE family WD_RS00540 PF09397 Ftsk gamma domain WD_RS00540 PF13491 4TM region of DNA translocase FtsK/SpoIIIE WD_RS00540 PF17854 FtsK alpha domain WD_RS00580 PF00677 Lumazine binding domain WD_RS00590 PF01409 tRNA synthetases class II core domain (F) WD_RS00590 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WD_RS00595 PF12804 MobA-like NTP transferase domain WD_RS00595 PF14602 Hexapeptide repeat of succinyl-transferase WD_RS00595 PF00132 Bacterial transferase hexapeptide (six repeats) WD_RS00600 PF00829 Ribosomal prokaryotic L21 protein WD_RS00605 PF01016 Ribosomal L27 protein WD_RS00615 PF00438 S-adenosylmethionine synthetase, N-terminal domain WD_RS00615 PF02773 S-adenosylmethionine synthetase, C-terminal domain WD_RS00615 PF02772 S-adenosylmethionine synthetase, central domain WD_RS00630 PF03070 TENA/THI-4/PQQC family WD_RS00640 PF00510 Cytochrome c oxidase subunit III WD_RS00645 PF02075 Crossover junction endodeoxyribonuclease RuvC WD_RS00650 PF03652 Holliday junction resolvase WD_RS00655 PF02934 GatB/GatE catalytic domain WD_RS00655 PF02637 GatB domain WD_RS00670 PF01406 tRNA synthetases class I (C) catalytic domain WD_RS00670 PF09190 DALR domain WD_RS00675 PF06055 Exopolysaccharide synthesis, ExoD WD_RS00685 PF02416 mttA/Hcf106 family WD_RS00690 PF00005 ABC transporter WD_RS00690 PF08402 TOBE domain WD_RS00700 PF01541 GIY-YIG catalytic domain WD_RS00700 PF02151 UvrB/uvrC motif WD_RS00700 PF08459 UvrC Helix-hairpin-helix N-terminal WD_RS00705 PF02092 Glycyl-tRNA synthetase beta subunit WD_RS00705 PF05746 DALR anticodon binding domain WD_RS00710 PF02091 Glycyl-tRNA synthetase alpha subunit WD_RS00720 PF00490 Delta-aminolevulinic acid dehydratase WD_RS00725 PF00146 NADH dehydrogenase WD_RS00730 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal WD_RS00730 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WD_RS00730 PF00384 Molybdopterin oxidoreductase WD_RS00745 PF03167 Uracil DNA glycosylase superfamily WD_RS00750 PF01327 Polypeptide deformylase WD_RS00755 PF02491 SHS2 domain inserted in FTSA WD_RS00760 PF00557 Metallopeptidase family M24 WD_RS00765 PF07690 Major Facilitator Superfamily WD_RS00765 PF00083 Sugar (and other) transporter WD_RS00770 PF01795 MraW methylase family WD_RS00785 PF01386 Ribosomal L25p family WD_RS00785 PF14693 Ribosomal protein TL5, C-terminal domain WD_RS00790 PF01195 Peptidyl-tRNA hydrolase WD_RS00800 PF01494 FAD binding domain WD_RS00810 PF10609 NUBPL iron-transfer P-loop NTPase WD_RS00840 PF01121 Dephospho-CoA kinase WD_RS00845 PF01612 3'-5' exonuclease WD_RS00845 PF00570 HRDC domain WD_RS00850 PF05190 MutS family domain IV WD_RS00850 PF05192 MutS domain III WD_RS00850 PF01624 MutS domain I WD_RS00850 PF05188 MutS domain II WD_RS00850 PF00488 MutS domain V WD_RS00865 PF03741 Integral membrane protein TerC family WD_RS00865 PF03471 Transporter associated domain WD_RS00865 PF00571 CBS domain WD_RS00870 PF02540 NAD synthase WD_RS00870 PF00117 Glutamine amidotransferase class-I WD_RS00870 PF00958 GMP synthase C terminal domain WD_RS00875 PF00317 Ribonucleotide reductase, all-alpha domain WD_RS00875 PF03477 ATP cone domain WD_RS00875 PF02867 Ribonucleotide reductase, barrel domain WD_RS00880 PF01209 ubiE/COQ5 methyltransferase family WD_RS00900 PF00528 Binding-protein-dependent transport system inner membrane component WD_RS00905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WD_RS00905 PF02874 ATP synthase alpha/beta family, beta-barrel domain WD_RS00910 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WD_RS00925 PF00596 Class II Aldolase and Adducin N-terminal domain WD_RS00935 PF00814 Glycoprotease family WD_RS00945 PF00268 Ribonucleotide reductase, small chain WD_RS00970 PF17761 DUF1016 N-terminal domain WD_RS00970 PF06250 YhcG PDDEXK nuclease domain WD_RS00975 PF11967 Recombination protein O N terminal WD_RS00975 PF02565 Recombination protein O C terminal WD_RS00980 PF00990 Diguanylate cyclase, GGDEF domain WD_RS00980 PF00072 Response regulator receiver domain WD_RS00990 PF05088 Bacterial NAD-glutamate dehydrogenase WD_RS00995 PF02861 Clp amino terminal domain, pathogenicity island component WD_RS00995 PF07724 AAA domain (Cdc48 subfamily) WD_RS00995 PF10431 C-terminal, D2-small domain, of ClpB protein WD_RS00995 PF00004 ATPase family associated with various cellular activities (AAA) WD_RS00995 PF17871 AAA lid domain WD_RS01005 PF00679 Elongation factor G C-terminus WD_RS01005 PF00009 Elongation factor Tu GTP binding domain WD_RS01005 PF03144 Elongation factor Tu domain 2 WD_RS01010 PF00156 Phosphoribosyl transferase domain WD_RS01015 PF00375 Sodium:dicarboxylate symporter family WD_RS01020 PF01979 Amidohydrolase family WD_RS01030 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal WD_RS01030 PF01578 Cytochrome C assembly protein WD_RS01040 PF02355 Protein export membrane protein WD_RS01040 PF07549 SecD/SecF GG Motif WD_RS01050 PF02096 60Kd inner membrane protein WD_RS01050 PF14849 YidC periplasmic domain WD_RS01055 PF00885 6,7-dimethyl-8-ribityllumazine synthase WD_RS01060 PF01029 NusB family WD_RS01085 PF00692 dUTPase WD_RS01090 PF00696 Amino acid kinase family WD_RS01095 PF01926 50S ribosome-binding GTPase WD_RS01100 PF00472 RF-1 domain WD_RS01100 PF03462 PCRF domain WD_RS01105 PF07690 Major Facilitator Superfamily WD_RS01120 PF02646 RmuC family WD_RS01125 PF01609 Transposase DDE domain WD_RS01130 PF00872 Transposase, Mutator family WD_RS01140 PF08671 Anti-repressor SinI WD_RS01140 PF01381 Helix-turn-helix WD_RS01150 PF04002 RadC-like JAB domain WD_RS01170 PF18755 Restriction Enzyme Adenine Methylase Associated WD_RS01170 PF01555 DNA methylase WD_RS01215 PF02371 Transposase IS116/IS110/IS902 family WD_RS01215 PF01548 Transposase WD_RS01290 PF00239 Resolvase, N terminal domain WD_RS01290 PF02796 Helix-turn-helix domain of resolvase WD_RS01325 PF01527 Transposase WD_RS01335 PF00116 Cytochrome C oxidase subunit II, periplasmic domain WD_RS01335 PF02790 Cytochrome C oxidase subunit II, transmembrane domain WD_RS01340 PF00115 Cytochrome C and Quinol oxidase polypeptide I WD_RS01345 PF01040 UbiA prenyltransferase family WD_RS01350 PF00075 RNase H WD_RS01360 PF00118 TCP-1/cpn60 chaperonin family WD_RS01365 PF00166 Chaperonin 10 Kd subunit WD_RS01370 PF01571 Aminomethyltransferase folate-binding domain WD_RS01375 PF02272 DHHA1 domain WD_RS01375 PF01368 DHH family WD_RS01375 PF17768 RecJ OB domain WD_RS01385 PF00115 Cytochrome C and Quinol oxidase polypeptide I WD_RS01395 PF05362 Lon protease (S16) C-terminal proteolytic domain WD_RS01395 PF00004 ATPase family associated with various cellular activities (AAA) WD_RS01395 PF02190 ATP-dependent protease La (LON) substrate-binding domain WD_RS01400 PF10431 C-terminal, D2-small domain, of ClpB protein WD_RS01400 PF07724 AAA domain (Cdc48 subfamily) WD_RS01400 PF06689 ClpX C4-type zinc finger WD_RS01405 PF00574 Clp protease WD_RS01410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WD_RS01410 PF05698 Bacterial trigger factor protein (TF) C-terminus WD_RS01410 PF05697 Bacterial trigger factor protein (TF) WD_RS01420 PF04972 BON domain WD_RS01425 PF02951 Prokaryotic glutathione synthetase, N-terminal domain WD_RS01425 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain WD_RS01430 PF04101 Glycosyltransferase family 28 C-terminal domain WD_RS01430 PF03033 Glycosyltransferase family 28 N-terminal domain WD_RS01440 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WD_RS01440 PF07992 Pyridine nucleotide-disulphide oxidoreductase WD_RS01480 PF01235 Sodium:alanine symporter family WD_RS01490 PF02545 Maf-like protein WD_RS01495 PF01176 Translation initiation factor 1A / IF-1 WD_RS01510 PF00709 Adenylosuccinate synthetase WD_RS01525 PF01578 Cytochrome C assembly protein WD_RS01530 PF03618 Kinase/pyrophosphorylase WD_RS01535 PF00444 Ribosomal protein L36 WD_RS01555 PF13276 HTH-like domain WD_RS01555 PF00665 Integrase core domain WD_RS01555 PF13333 Integrase core domain WD_RS01560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WD_RS01565 PF13784 Fic/DOC family N-terminal WD_RS01565 PF02661 Fic/DOC family WD_RS01570 PF08275 DNA primase catalytic core, N-terminal domain WD_RS01570 PF13662 Toprim domain WD_RS01570 PF01807 CHC2 zinc finger WD_RS01575 PF08241 Methyltransferase domain WD_RS01585 PF08264 Anticodon-binding domain of tRNA WD_RS01585 PF09334 tRNA synthetases class I (M) WD_RS01595 PF03796 DnaB-like helicase C terminal domain WD_RS01595 PF00772 DnaB-like helicase N terminal domain WD_RS01605 PF06271 RDD family WD_RS01610 PF04002 RadC-like JAB domain WD_RS01620 PF12705 PD-(D/E)XK nuclease superfamily WD_RS01620 PF00580 UvrD/REP helicase N-terminal domain WD_RS01620 PF13361 UvrD-like helicase C-terminal domain WD_RS01625 PF08544 GHMP kinases C terminal WD_RS01625 PF00288 GHMP kinases N terminal domain WD_RS01635 PF00950 ABC 3 transport family WD_RS01655 PF05173 Dihydrodipicolinate reductase, C-terminus WD_RS01655 PF01113 Dihydrodipicolinate reductase, N-terminus WD_RS01660 PF00005 ABC transporter WD_RS01675 PF00472 RF-1 domain WD_RS01675 PF03462 PCRF domain WD_RS01680 PF00571 CBS domain WD_RS01680 PF01769 Divalent cation transporter WD_RS01680 PF03448 MgtE intracellular N domain WD_RS01700 PF00692 dUTPase WD_RS01725 PF07690 Major Facilitator Superfamily WD_RS01735 PF00456 Transketolase, thiamine diphosphate binding domain WD_RS01735 PF02780 Transketolase, C-terminal domain WD_RS01735 PF02779 Transketolase, pyrimidine binding domain WD_RS01740 PF01479 S4 domain WD_RS01740 PF00163 Ribosomal protein S4/S9 N-terminal domain WD_RS01750 PF04384 Iron-sulphur cluster assembly WD_RS01760 PF00830 Ribosomal L28 family WD_RS01765 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family WD_RS01765 PF04055 Radical SAM superfamily WD_RS01770 PF01209 ubiE/COQ5 methyltransferase family WD_RS01775 PF01098 Cell cycle protein WD_RS01795 PF00005 ABC transporter WD_RS01795 PF00664 ABC transporter transmembrane region WD_RS01805 PF00750 tRNA synthetases class I (R) WD_RS01805 PF03485 Arginyl tRNA synthetase N terminal domain WD_RS01805 PF05746 DALR anticodon binding domain WD_RS01825 PF00005 ABC transporter WD_RS01835 PF02938 GAD domain WD_RS01835 PF01336 OB-fold nucleic acid binding domain WD_RS01835 PF00152 tRNA synthetases class II (D, K and N) WD_RS01840 PF00083 Sugar (and other) transporter WD_RS01840 PF08946 Osmosensory transporter coiled coil WD_RS01845 PF00849 RNA pseudouridylate synthase WD_RS01845 PF01479 S4 domain WD_RS01850 PF00676 Dehydrogenase E1 component WD_RS01855 PF03653 Uncharacterised protein family (UPF0093) WD_RS01860 PF01938 TRAM domain WD_RS01860 PF00919 Uncharacterized protein family UPF0004 WD_RS01860 PF04055 Radical SAM superfamily WD_RS01870 PF08264 Anticodon-binding domain of tRNA WD_RS01870 PF00133 tRNA synthetases class I (I, L, M and V) WD_RS01880 PF01588 Putative tRNA binding domain WD_RS01880 PF03483 B3/4 domain WD_RS01880 PF03484 tRNA synthetase B5 domain WD_RS01880 PF03147 Ferredoxin-fold anticodon binding domain WD_RS01880 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WD_RS01890 PF00119 ATP synthase A chain WD_RS01895 PF00137 ATP synthase subunit C WD_RS01915 PF02628 Cytochrome oxidase assembly protein WD_RS01920 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WD_RS01920 PF00364 Biotin-requiring enzyme WD_RS01920 PF00289 Biotin carboxylase, N-terminal domain WD_RS01920 PF02785 Biotin carboxylase C-terminal domain WD_RS01920 PF18140 Propionyl-coenzyme A carboxylase BT domain WD_RS01930 PF00749 tRNA synthetases class I (E and Q), catalytic domain WD_RS01935 PF00890 FAD binding domain WD_RS01935 PF02910 Fumarate reductase flavoprotein C-term WD_RS01945 PF00625 Guanylate kinase WD_RS01960 PF01926 50S ribosome-binding GTPase WD_RS01960 PF06071 Protein of unknown function (DUF933) WD_RS01970 PF01743 Poly A polymerase head domain WD_RS01970 PF12627 Probable RNA and SrmB- binding site of polymerase A WD_RS01970 PF13735 tRNA nucleotidyltransferase domain 2 putative WD_RS01990 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WD_RS01990 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WD_RS01995 PF00902 Sec-independent protein translocase protein (TatC) WD_RS02000 PF02863 Arginine repressor, C-terminal domain WD_RS02000 PF01316 Arginine repressor, DNA binding domain WD_RS02005 PF00497 Bacterial extracellular solute-binding proteins, family 3 WD_RS02010 PF00528 Binding-protein-dependent transport system inner membrane component WD_RS02015 PF00005 ABC transporter WD_RS02045 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WD_RS02060 PF01434 Peptidase family M41 WD_RS02060 PF17862 AAA+ lid domain WD_RS02060 PF00004 ATPase family associated with various cellular activities (AAA) WD_RS02060 PF06480 FtsH Extracellular WD_RS02065 PF00133 tRNA synthetases class I (I, L, M and V) WD_RS02065 PF08264 Anticodon-binding domain of tRNA WD_RS02085 PF06418 CTP synthase N-terminus WD_RS02085 PF00117 Glutamine amidotransferase class-I WD_RS02090 PF14437 MafB19-like deaminase WD_RS02095 PF00083 Sugar (and other) transporter WD_RS02095 PF07690 Major Facilitator Superfamily WD_RS02105 PF00004 ATPase family associated with various cellular activities (AAA) WD_RS02105 PF17862 AAA+ lid domain WD_RS02105 PF06480 FtsH Extracellular WD_RS02105 PF01434 Peptidase family M41 WD_RS02110 PF00364 Biotin-requiring enzyme WD_RS02110 PF02780 Transketolase, C-terminal domain WD_RS02110 PF02779 Transketolase, pyrimidine binding domain WD_RS02120 PF06421 GTP-binding protein LepA C-terminus WD_RS02120 PF03144 Elongation factor Tu domain 2 WD_RS02120 PF00009 Elongation factor Tu GTP binding domain WD_RS02120 PF14492 Elongation Factor G, domain II WD_RS02120 PF00679 Elongation factor G C-terminus WD_RS02145 PF01476 LysM domain WD_RS02145 PF01551 Peptidase family M23 WD_RS02145 PF08525 Opacity-associated protein A N-terminal motif WD_RS02150 PF01709 Transcriptional regulator WD_RS02155 PF13525 Outer membrane lipoprotein WD_RS02165 PF01066 CDP-alcohol phosphatidyltransferase WD_RS02170 PF00390 Malic enzyme, N-terminal domain WD_RS02170 PF01515 Phosphate acetyl/butaryl transferase WD_RS02170 PF03949 Malic enzyme, NAD binding domain WD_RS02185 PF00462 Glutaredoxin WD_RS02190 PF10415 Fumarase C C-terminus WD_RS02190 PF00206 Lyase WD_RS02195 PF01018 GTP1/OBG WD_RS02195 PF01926 50S ribosome-binding GTPase WD_RS02200 PF00113 Enolase, C-terminal TIM barrel domain WD_RS02200 PF03952 Enolase, N-terminal domain WD_RS02205 PF02875 Mur ligase family, glutamate ligase domain WD_RS02205 PF08245 Mur ligase middle domain WD_RS02205 PF01225 Mur ligase family, catalytic domain WD_RS02210 PF03330 Lytic transglycolase WD_RS02230 PF04055 Radical SAM superfamily WD_RS02230 PF00919 Uncharacterized protein family UPF0004 WD_RS02235 PF01425 Amidase WD_RS02255 PF01119 DNA mismatch repair protein, C-terminal domain WD_RS02255 PF08676 MutL C terminal dimerisation domain WD_RS02315 PF01527 Transposase WD_RS02335 PF01467 Cytidylyltransferase-like WD_RS02350 PF01255 Putative undecaprenyl diphosphate synthase WD_RS02355 PF01765 Ribosome recycling factor WD_RS02360 PF00696 Amino acid kinase family WD_RS02365 PF00889 Elongation factor TS WD_RS02370 PF00318 Ribosomal protein S2 WD_RS02380 PF02699 Preprotein translocase subunit WD_RS02385 PF01380 SIS domain WD_RS02410 PF01565 FAD binding domain WD_RS02410 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WD_RS02415 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain WD_RS02415 PF03900 Porphobilinogen deaminase, C-terminal domain WD_RS02420 PF02817 e3 binding domain WD_RS02420 PF00364 Biotin-requiring enzyme WD_RS02420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WD_RS02445 PF07516 SecA Wing and Scaffold domain WD_RS02445 PF01043 SecA preprotein cross-linking domain WD_RS02445 PF07517 SecA DEAD-like domain WD_RS02445 PF02810 SEC-C motif WD_RS02455 PF00923 Transaldolase/Fructose-6-phosphate aldolase WD_RS02475 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WD_RS02475 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WD_RS02480 PF02441 Flavoprotein WD_RS02485 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) WD_RS02490 PF03471 Transporter associated domain WD_RS02490 PF00571 CBS domain WD_RS02490 PF01595 Cyclin M transmembrane N-terminal domain WD_RS02495 PF00202 Aminotransferase class-III WD_RS02500 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WD_RS02510 PF01609 Transposase DDE domain WD_RS02520 PF01734 Patatin-like phospholipase WD_RS02665 PF01555 DNA methylase WD_RS02665 PF18755 Restriction Enzyme Adenine Methylase Associated WD_RS02675 PF00023 Ankyrin repeat WD_RS02735 PF12419 SNF2 Helicase protein WD_RS02735 PF00176 SNF2 family N-terminal domain WD_RS02735 PF00271 Helicase conserved C-terminal domain WD_RS02740 PF00132 Bacterial transferase hexapeptide (six repeats) WD_RS02740 PF12804 MobA-like NTP transferase domain WD_RS02740 PF14602 Hexapeptide repeat of succinyl-transferase WD_RS02745 PF16363 GDP-mannose 4,6 dehydratase WD_RS02765 PF00664 ABC transporter transmembrane region WD_RS02765 PF00005 ABC transporter WD_RS02770 PF01212 Beta-eliminating lyase WD_RS02775 PF01212 Beta-eliminating lyase WD_RS02785 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WD_RS02785 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WD_RS02785 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WD_RS02790 PF00892 EamA-like transporter family WD_RS02810 PF04002 RadC-like JAB domain WD_RS02815 PF01381 Helix-turn-helix WD_RS02850 PF00239 Resolvase, N terminal domain WD_RS02850 PF02796 Helix-turn-helix domain of resolvase WD_RS02920 PF01527 Transposase WD_RS02925 PF00529 HlyD membrane-fusion protein of T1SS WD_RS02925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WD_RS02945 PF00925 GTP cyclohydrolase II WD_RS02945 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WD_RS02950 PF01272 Transcription elongation factor, GreA/GreB, C-term WD_RS02950 PF03449 Transcription elongation factor, N-terminal WD_RS02955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WD_RS02955 PF00306 ATP synthase alpha/beta chain, C terminal domain WD_RS02955 PF02874 ATP synthase alpha/beta family, beta-barrel domain WD_RS02960 PF00213 ATP synthase delta (OSCP) subunit WD_RS02965 PF02021 Uncharacterised protein family UPF0102 WD_RS02970 PF01196 Ribosomal protein L17 WD_RS02975 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WD_RS02975 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WD_RS02975 PF01000 RNA polymerase Rpb3/RpoA insert domain WD_RS02980 PF00411 Ribosomal protein S11 WD_RS02985 PF00416 Ribosomal protein S13/S18 WD_RS02995 PF00344 SecY translocase WD_RS03000 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WD_RS03005 PF00333 Ribosomal protein S5, N-terminal domain WD_RS03005 PF03719 Ribosomal protein S5, C-terminal domain WD_RS03010 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WD_RS03015 PF00347 Ribosomal protein L6 WD_RS03020 PF00410 Ribosomal protein S8 WD_RS03025 PF00253 Ribosomal protein S14p/S29e WD_RS03030 PF00673 ribosomal L5P family C-terminus WD_RS03030 PF00281 Ribosomal protein L5 WD_RS03035 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WD_RS03040 PF00238 Ribosomal protein L14p/L23e WD_RS03045 PF00366 Ribosomal protein S17 WD_RS03050 PF00831 Ribosomal L29 protein WD_RS03055 PF00252 Ribosomal protein L16p/L10e WD_RS03060 PF07650 KH domain WD_RS03060 PF00189 Ribosomal protein S3, C-terminal domain WD_RS03065 PF00237 Ribosomal protein L22p/L17e WD_RS03070 PF00203 Ribosomal protein S19 WD_RS03075 PF03947 Ribosomal Proteins L2, C-terminal domain WD_RS03075 PF00181 Ribosomal Proteins L2, RNA binding domain WD_RS03080 PF00276 Ribosomal protein L23 WD_RS03085 PF00573 Ribosomal protein L4/L1 family WD_RS03090 PF00297 Ribosomal protein L3 WD_RS03095 PF00338 Ribosomal protein S10p/S20e WD_RS03100 PF03143 Elongation factor Tu C-terminal domain WD_RS03100 PF03144 Elongation factor Tu domain 2 WD_RS03100 PF00009 Elongation factor Tu GTP binding domain WD_RS03115 PF00117 Glutamine amidotransferase class-I WD_RS03115 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WD_RS03130 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded WD_RS03140 PF02896 PEP-utilising enzyme, TIM barrel domain WD_RS03140 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WD_RS03140 PF00391 PEP-utilising enzyme, mobile domain WD_RS03150 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WD_RS03160 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WD_RS03160 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WD_RS03160 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WD_RS03160 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WD_RS03175 PF01548 Transposase WD_RS03175 PF02371 Transposase IS116/IS110/IS902 family WD_RS03180 PF00814 Glycoprotease family WD_RS03190 PF00266 Aminotransferase class-V WD_RS03195 PF02129 X-Pro dipeptidyl-peptidase (S15 family) WD_RS03200 PF00005 ABC transporter WD_RS03205 PF01521 Iron-sulphur cluster biosynthesis WD_RS03210 PF13286 Phosphohydrolase-associated domain WD_RS03210 PF01966 HD domain WD_RS03215 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WD_RS03215 PF01872 RibD C-terminal domain WD_RS03225 PF00834 Ribulose-phosphate 3 epimerase family WD_RS03235 PF00132 Bacterial transferase hexapeptide (six repeats) WD_RS03235 PF14602 Hexapeptide repeat of succinyl-transferase WD_RS03235 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal WD_RS03260 PF03717 Penicillin-binding Protein dimerisation domain WD_RS03260 PF00905 Penicillin binding protein transpeptidase domain WD_RS03265 PF00457 Glycosyl hydrolases family 11 WD_RS03265 PF01522 Polysaccharide deacetylase WD_RS03265 PF03422 Carbohydrate binding module (family 6) WD_RS03270 PF13335 Magnesium chelatase, subunit ChlI C-terminal WD_RS03270 PF01078 Magnesium chelatase, subunit ChlI WD_RS03280 PF00091 Tubulin/FtsZ family, GTPase domain WD_RS03280 PF12327 FtsZ family, C-terminal domain WD_RS03290 PF02130 Uncharacterized protein family UPF0054 WD_RS03295 PF13085 2Fe-2S iron-sulfur cluster binding domain WD_RS03310 PF04608 Phosphatidylglycerophosphatase A WD_RS03315 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WD_RS03315 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WD_RS03320 PF00072 Response regulator receiver domain WD_RS03320 PF00486 Transcriptional regulatory protein, C terminal WD_RS03335 PF01702 Queuine tRNA-ribosyltransferase WD_RS03345 PF00675 Insulinase (Peptidase family M16) WD_RS03345 PF05193 Peptidase M16 inactive domain WD_RS03350 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WD_RS03350 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WD_RS03355 PF01654 Cytochrome bd terminal oxidase subunit I WD_RS03360 PF02322 Cytochrome bd terminal oxidase subunit II WD_RS03365 PF01926 50S ribosome-binding GTPase WD_RS03365 PF07650 KH domain WD_RS03405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WD_RS03405 PF07992 Pyridine nucleotide-disulphide oxidoreductase WD_RS03410 PF00589 Phage integrase family WD_RS03410 PF02899 Phage integrase, N-terminal SAM-like domain WD_RS03420 PF07992 Pyridine nucleotide-disulphide oxidoreductase WD_RS03425 PF00578 AhpC/TSA family WD_RS03425 PF10417 C-terminal domain of 1-Cys peroxiredoxin WD_RS03435 PF00462 Glutaredoxin WD_RS03440 PF06574 FAD synthetase WD_RS03440 PF01687 Riboflavin kinase WD_RS03445 PF01252 Signal peptidase (SPase) II WD_RS03450 PF05193 Peptidase M16 inactive domain WD_RS03450 PF00675 Insulinase (Peptidase family M16) WD_RS03460 PF00551 Formyl transferase WD_RS03480 PF01668 SmpB protein WD_RS03485 PF01790 Prolipoprotein diacylglyceryl transferase WD_RS03490 PF00005 ABC transporter WD_RS03490 PF00664 ABC transporter transmembrane region WD_RS03515 PF00436 Single-strand binding protein family WD_RS03520 PF00701 Dihydrodipicolinate synthetase family WD_RS03525 PF12826 Helix-hairpin-helix motif WD_RS03525 PF03119 NAD-dependent DNA ligase C4 zinc finger domain WD_RS03525 PF03120 NAD-dependent DNA ligase OB-fold domain WD_RS03525 PF01653 NAD-dependent DNA ligase adenylation domain WD_RS03525 PF00533 BRCA1 C Terminus (BRCT) domain WD_RS03530 PF00749 tRNA synthetases class I (E and Q), catalytic domain WD_RS03535 PF14579 Helix-hairpin-helix motif WD_RS03535 PF02811 PHP domain WD_RS03535 PF07733 Bacterial DNA polymerase III alpha NTPase domain WD_RS03535 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WD_RS03540 PF01250 Ribosomal protein S6 WD_RS03545 PF01084 Ribosomal protein S18 WD_RS03550 PF03948 Ribosomal protein L9, C-terminal domain WD_RS03550 PF01281 Ribosomal protein L9, N-terminal domain WD_RS03555 PF10397 Adenylosuccinate lyase C-terminus WD_RS03555 PF00206 Lyase WD_RS03565 PF13685 Iron-containing alcohol dehydrogenase WD_RS03570 PF01546 Peptidase family M20/M25/M40 WD_RS03570 PF07687 Peptidase dimerisation domain WD_RS03575 PF00730 HhH-GPD superfamily base excision DNA repair protein WD_RS03575 PF00633 Helix-hairpin-helix motif WD_RS03575 PF10576 Iron-sulfur binding domain of endonuclease III WD_RS03585 PF18324 Hypothetical protein TT1725 WD_RS03585 PF00180 Isocitrate/isopropylmalate dehydrogenase WD_RS03600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WD_RS03600 PF07497 Rho termination factor, RNA-binding domain WD_RS03600 PF07498 Rho termination factor, N-terminal domain WD_RS03610 PF00639 PPIC-type PPIASE domain WD_RS03615 PF00886 Ribosomal protein S16 WD_RS03620 PF00348 Polyprenyl synthetase WD_RS03625 PF01025 GrpE WD_RS03630 PF00579 tRNA synthetases class I (W and Y) WD_RS03640 PF00034 Cytochrome c WD_RS03665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WD_RS03665 PF03129 Anticodon binding domain WD_RS03670 PF01648 4'-phosphopantetheinyl transferase superfamily WD_RS03675 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WD_RS03675 PF00361 Proton-conducting membrane transporter WD_RS03675 PF13244 Domain of unknown function (DUF4040) WD_RS03695 PF01300 Telomere recombination WD_RS03715 PF00270 DEAD/DEAH box helicase WD_RS03715 PF17191 RecG wedge domain WD_RS03715 PF00271 Helicase conserved C-terminal domain WD_RS03745 PF01145 SPFH domain / Band 7 family WD_RS03750 PF01145 SPFH domain / Band 7 family WD_RS03755 PF13180 PDZ domain WD_RS03780 PF00271 Helicase conserved C-terminal domain WD_RS03780 PF17757 UvrB interaction domain WD_RS03780 PF04851 Type III restriction enzyme, res subunit WD_RS03780 PF02151 UvrB/uvrC motif WD_RS03780 PF12344 Ultra-violet resistance protein B WD_RS03795 PF02371 Transposase IS116/IS110/IS902 family WD_RS03795 PF01548 Transposase WD_RS03800 PF03918 Cytochrome C biogenesis protein WD_RS03810 PF00111 2Fe-2S iron-sulfur cluster binding domain WD_RS03815 PF08245 Mur ligase middle domain WD_RS03840 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WD_RS03845 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WD_RS03850 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WD_RS03855 PF04610 TrbL/VirB6 plasmid conjugal transfer protein WD_RS03860 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WD_RS03870 PF01921 tRNA synthetases class I (K) WD_RS03875 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WD_RS03875 PF02272 DHHA1 domain WD_RS03875 PF01411 tRNA synthetases class II (A) WD_RS03885 PF01632 Ribosomal protein L35 WD_RS03890 PF00453 Ribosomal protein L20 WD_RS03895 PF00551 Formyl transferase WD_RS03895 PF02911 Formyl transferase, C-terminal domain WD_RS03900 PF02142 MGS-like domain WD_RS03900 PF01808 AICARFT/IMPCHase bienzyme WD_RS03910 PF01676 Metalloenzyme superfamily WD_RS03910 PF06415 BPG-independent PGAM N-terminus (iPGM_N) WD_RS03915 PF00698 Acyl transferase domain WD_RS03920 PF01197 Ribosomal protein L31 WD_RS03925 PF01513 ATP-NAD kinase WD_RS03965 PF00085 Thioredoxin WD_RS03975 PF03070 TENA/THI-4/PQQC family WD_RS03990 PF00186 Dihydrofolate reductase WD_RS04000 PF18073 Rubredoxin metal binding domain WD_RS04005 PF02881 SRP54-type protein, helical bundle domain WD_RS04005 PF00448 SRP54-type protein, GTPase domain WD_RS04010 PF01592 NifU-like N terminal domain WD_RS04015 PF01521 Iron-sulphur cluster biosynthesis WD_RS04020 PF07743 HSCB C-terminal oligomerisation domain WD_RS04025 PF00012 Hsp70 protein WD_RS04030 PF10502 Signal peptidase, peptidase S26 WD_RS04035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WD_RS04035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WD_RS04075 PF16198 tRNA pseudouridylate synthase B C-terminal domain WD_RS04075 PF01509 TruB family pseudouridylate synthase (N terminal domain) WD_RS04080 PF00312 Ribosomal protein S15 WD_RS04085 PF00013 KH domain WD_RS04085 PF01138 3' exoribonuclease family, domain 1 WD_RS04085 PF03725 3' exoribonuclease family, domain 2 WD_RS04085 PF00575 S1 RNA binding domain WD_RS04085 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WD_RS04125 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WD_RS04125 PF00586 AIR synthase related protein, N-terminal domain WD_RS04125 PF02769 AIR synthase related protein, C-terminal domain WD_RS04135 PF17755 UvrA DNA-binding domain WD_RS04135 PF17760 UvrA interaction domain WD_RS04165 PF02875 Mur ligase family, glutamate ligase domain WD_RS04165 PF08245 Mur ligase middle domain WD_RS04170 PF01053 Cys/Met metabolism PLP-dependent enzyme WD_RS04180 PF00012 Hsp70 protein WD_RS04185 PF00575 S1 RNA binding domain WD_RS04185 PF10150 Ribonuclease E/G family WD_RS04185 PF12111 Polyribonucleotide phosphorylase C terminal WD_RS04190 PF00471 Ribosomal protein L33 WD_RS04225 PF01297 Zinc-uptake complex component A periplasmic WD_RS04230 PF00005 ABC transporter WD_RS04235 PF03109 ABC1 family WD_RS04280 PF00107 Zinc-binding dehydrogenase WD_RS04280 PF08240 Alcohol dehydrogenase GroES-like domain WD_RS04285 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 WD_RS04290 PF01027 Inhibitor of apoptosis-promoting Bax1 WD_RS04295 PF08032 RNA 2'-O ribose methyltransferase substrate binding WD_RS04295 PF00588 SpoU rRNA Methylase family WD_RS04305 PF02774 Semialdehyde dehydrogenase, dimerisation domain WD_RS04305 PF01118 Semialdehyde dehydrogenase, NAD binding domain WD_RS04320 PF13520 Amino acid permease WD_RS04330 PF01842 ACT domain WD_RS04330 PF13840 ACT domain WD_RS04330 PF00696 Amino acid kinase family WD_RS04345 PF00580 UvrD/REP helicase N-terminal domain WD_RS04345 PF13361 UvrD-like helicase C-terminal domain WD_RS04355 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 WD_RS04360 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WD_RS04365 PF00361 Proton-conducting membrane transporter WD_RS04365 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WD_RS04370 PF00361 Proton-conducting membrane transporter WD_RS04375 PF00361 Proton-conducting membrane transporter WD_RS04380 PF03099 Biotin/lipoate A/B protein ligase family WD_RS04380 PF03099 Biotin/lipoate A/B protein ligase family WD_RS04380 PF02237 Biotin protein ligase C terminal domain WD_RS04380 PF08279 HTH domain WD_RS04380 PF08279 HTH domain WD_RS04380 PF02237 Biotin protein ligase C terminal domain WD_RS04385 PF03100 CcmE WD_RS04415 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WD_RS04415 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit WD_RS04415 PF10531 SLBB domain WD_RS04420 PF05198 Translation initiation factor IF-3, N-terminal domain WD_RS04420 PF00707 Translation initiation factor IF-3, C-terminal domain WD_RS04425 PF03129 Anticodon binding domain WD_RS04425 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WD_RS04425 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WD_RS04435 PF12838 4Fe-4S dicluster domain WD_RS04440 PF12631 MnmE helical domain WD_RS04440 PF10396 GTP-binding protein TrmE N-terminus WD_RS04440 PF01926 50S ribosome-binding GTPase WD_RS04450 PF07992 Pyridine nucleotide-disulphide oxidoreductase WD_RS04455 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WD_RS04455 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WD_RS04460 PF02504 Fatty acid synthesis protein WD_RS04465 PF01783 Ribosomal L32p protein family WD_RS04470 PF02405 Permease MlaE WD_RS04475 PF00005 ABC transporter WD_RS04485 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain WD_RS04485 PF13288 DXP reductoisomerase C-terminal domain WD_RS04485 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase WD_RS04495 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WD_RS04505 PF00266 Aminotransferase class-V WD_RS04510 PF01523 Putative modulator of DNA gyrase WD_RS04540 PF00476 DNA polymerase family A WD_RS04540 PF01367 5'-3' exonuclease, C-terminal SAM fold WD_RS04540 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WD_RS04570 PF00557 Metallopeptidase family M24 WD_RS04570 PF01321 Creatinase/Prolidase N-terminal domain WD_RS04575 PF01134 Glucose inhibited division protein A WD_RS04575 PF13932 GidA associated domain WD_RS04585 PF03023 Lipid II flippase MurJ WD_RS04595 PF04860 Phage portal protein WD_RS04605 PF03099 Biotin/lipoate A/B protein ligase family WD_RS04610 PF17676 LD-carboxypeptidase C-terminal domain WD_RS04610 PF02016 LD-carboxypeptidase N-terminal domain WD_RS04625 PF00528 Binding-protein-dependent transport system inner membrane component WD_RS04635 PF01245 Ribosomal protein L19 WD_RS04640 PF01746 tRNA (Guanine-1)-methyltransferase WD_RS04645 PF01259 SAICAR synthetase WD_RS04650 PF02769 AIR synthase related protein, C-terminal domain WD_RS04650 PF00586 AIR synthase related protein, N-terminal domain WD_RS04665 PF00571 CBS domain WD_RS04665 PF03471 Transporter associated domain WD_RS04670 PF01208 Uroporphyrinogen decarboxylase (URO-D) WD_RS04675 PF00155 Aminotransferase class I and II WD_RS04700 PF00464 Serine hydroxymethyltransferase WD_RS04720 PF01545 Cation efflux family WD_RS04730 PF02660 Glycerol-3-phosphate acyltransferase WD_RS04735 PF01235 Sodium:alanine symporter family WD_RS04740 PF01235 Sodium:alanine symporter family WD_RS04745 PF01066 CDP-alcohol phosphatidyltransferase WD_RS04750 PF02666 Phosphatidylserine decarboxylase WD_RS04755 PF00154 recA bacterial DNA recombination protein WD_RS04760 PF00226 DnaJ domain WD_RS04760 PF00684 DnaJ central domain WD_RS04760 PF01556 DnaJ C terminal domain WD_RS04765 PF08245 Mur ligase middle domain WD_RS04765 PF02875 Mur ligase family, glutamate ligase domain WD_RS04775 PF03364 Polyketide cyclase / dehydrase and lipid transport WD_RS04780 PF13462 Thioredoxin WD_RS04805 PF12169 DNA polymerase III subunits gamma and tau domain III WD_RS04810 PF02575 YbaB/EbfC DNA-binding family WD_RS04815 PF13505 Outer membrane protein beta-barrel domain WD_RS04820 PF00140 Sigma-70 factor, region 1.2 WD_RS04820 PF04542 Sigma-70 region 2 WD_RS04820 PF04545 Sigma-70, region 4 WD_RS04830 PF00712 DNA polymerase III beta subunit, N-terminal domain WD_RS04830 PF02768 DNA polymerase III beta subunit, C-terminal domain WD_RS04830 PF02767 DNA polymerase III beta subunit, central domain WD_RS04835 PF01416 tRNA pseudouridine synthase WD_RS04845 PF00033 Cytochrome b/b6/petB WD_RS04845 PF02167 Cytochrome C1 family WD_RS04845 PF00032 Cytochrome b(C-terminal)/b6/petD WD_RS04850 PF00032 Cytochrome b(C-terminal)/b6/petD WD_RS04850 PF00033 Cytochrome b/b6/petB WD_RS04855 PF00684 DnaJ central domain WD_RS04855 PF00226 DnaJ domain WD_RS04855 PF01556 DnaJ C terminal domain WD_RS04865 PF00226 DnaJ domain WD_RS04865 PF00684 DnaJ central domain WD_RS04865 PF01556 DnaJ C terminal domain WD_RS04875 PF13393 Histidyl-tRNA synthetase WD_RS04875 PF03129 Anticodon binding domain WD_RS04880 PF01975 Survival protein SurE WD_RS04885 PF00448 SRP54-type protein, GTPase domain WD_RS04885 PF02881 SRP54-type protein, helical bundle domain WD_RS04885 PF02978 Signal peptide binding domain WD_RS04895 PF07992 Pyridine nucleotide-disulphide oxidoreductase WD_RS04900 PF07977 FabA-like domain WD_RS04910 PF07244 Surface antigen variable number repeat WD_RS04910 PF01103 Surface antigen WD_RS04915 PF17820 PDZ domain WD_RS04915 PF02163 Peptidase family M50 WD_RS04930 PF00216 Bacterial DNA-binding protein WD_RS04935 PF00575 S1 RNA binding domain WD_RS04940 PF02390 Putative methyltransferase WD_RS04950 PF01258 Prokaryotic dksA/traR C4-type zinc finger WD_RS04970 PF01926 50S ribosome-binding GTPase WD_RS04970 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WD_RS04980 PF03232 Ubiquinone biosynthesis protein COQ7 WD_RS04985 PF00953 Glycosyl transferase family 4 WD_RS04990 PF01351 Ribonuclease HII WD_RS05010 PF00361 Proton-conducting membrane transporter WD_RS05015 PF01098 Cell cycle protein WD_RS05020 PF00156 Phosphoribosyl transferase domain WD_RS05020 PF13537 Glutamine amidotransferase domain WD_RS05025 PF02245 Methylpurine-DNA glycosylase (MPG) WD_RS05035 PF05496 Holliday junction DNA helicase RuvB P-loop domain WD_RS05035 PF17864 RuvB AAA lid domain WD_RS05035 PF05491 RuvB C-terminal winged helix domain WD_RS05040 PF01330 RuvA N terminal domain WD_RS05040 PF07499 RuvA, C-terminal domain WD_RS05060 PF00579 tRNA synthetases class I (W and Y) WD_RS05080 PF00293 NUDIX domain WD_RS05085 PF01026 TatD related DNase WD_RS05090 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WD_RS05090 PF00056 lactate/malate dehydrogenase, NAD binding domain WD_RS05095 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WD_RS05100 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WD_RS05105 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 WD_RS05110 PF01230 HIT domain WD_RS05125 PF02875 Mur ligase family, glutamate ligase domain WD_RS05125 PF01225 Mur ligase family, catalytic domain WD_RS05125 PF08245 Mur ligase middle domain WD_RS05130 PF01370 NAD dependent epimerase/dehydratase family WD_RS05130 PF08338 Domain of unknown function (DUF1731) WD_RS05145 PF01751 Toprim domain WD_RS05145 PF01131 DNA topoisomerase WD_RS05145 PF13368 Topoisomerase C-terminal repeat WD_RS05145 PF01396 Topoisomerase DNA binding C4 zinc finger WD_RS05150 PF00581 Rhodanese-like domain WD_RS05150 PF17773 UPF0176 acylphosphatase like domain WD_RS05155 PF00528 Binding-protein-dependent transport system inner membrane component WD_RS05165 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) WD_RS05175 PF04379 ApaG domain WD_RS05180 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain WD_RS05180 PF02222 ATP-grasp domain WD_RS05185 PF02542 YgbB family WD_RS05185 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WD_RS05190 PF01594 AI-2E family transporter WD_RS05200 PF00589 Phage integrase family WD_RS05200 PF02899 Phage integrase, N-terminal SAM-like domain WD_RS05210 PF01649 Ribosomal protein S20 WD_RS05215 PF00285 Citrate synthase, C-terminal domain WD_RS05235 PF01039 Carboxyl transferase domain WD_RS05245 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain WD_RS05245 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain WD_RS05245 PF06827 Zinc finger found in FPG and IleRS WD_RS05250 PF01243 Pyridoxamine 5'-phosphate oxidase WD_RS05250 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region WD_RS05260 PF03772 Competence protein WD_RS05260 PF00753 Metallo-beta-lactamase superfamily WD_RS05270 PF00849 RNA pseudouridylate synthase WD_RS05270 PF01479 S4 domain WD_RS05275 PF01219 Prokaryotic diacylglycerol kinase WD_RS05295 PF00162 Phosphoglycerate kinase WD_RS05305 PF03060 Nitronate monooxygenase WD_RS05320 PF03135 CagE, TrbE, VirB family, component of type IV transporter system WD_RS05340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WD_RS05340 PF00364 Biotin-requiring enzyme WD_RS05340 PF02817 e3 binding domain WD_RS05355 PF13662 Toprim domain WD_RS05355 PF02132 RecR protein WD_RS05360 PF00334 Nucleoside diphosphate kinase WD_RS05370 PF00762 Ferrochelatase WD_RS05385 PF00227 Proteasome subunit WD_RS05390 PF00004 ATPase family associated with various cellular activities (AAA) WD_RS05390 PF10431 C-terminal, D2-small domain, of ClpB protein WD_RS05390 PF07724 AAA domain (Cdc48 subfamily) WD_RS05405 PF00550 Phosphopantetheine attachment site WD_RS05410 PF00109 Beta-ketoacyl synthase, N-terminal domain WD_RS05410 PF02801 Beta-ketoacyl synthase, C-terminal domain WD_RS05420 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WD_RS05425 PF02511 Thymidylate synthase complementing protein WD_RS05435 PF00270 DEAD/DEAH box helicase WD_RS05435 PF00271 Helicase conserved C-terminal domain WD_RS05435 PF17764 3′ DNA-binding domain (3′BD) WD_RS05435 PF18074 Primosomal protein N C-terminal domain WD_RS05435 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WD_RS05440 PF00355 Rieske [2Fe-2S] domain WD_RS05440 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal WD_RS05445 PF00521 DNA gyrase/topoisomerase IV, subunit A WD_RS05445 PF03989 DNA gyrase C-terminal domain, beta-propeller WD_RS05465 PF02632 BioY family WD_RS05470 PF00881 Nitroreductase family WD_RS05475 PF01678 Diaminopimelate epimerase WD_RS05480 PF02629 CoA binding domain WD_RS05480 PF00549 CoA-ligase WD_RS05485 PF08442 ATP-grasp domain WD_RS05485 PF00549 CoA-ligase WD_RS05500 PF04452 RNA methyltransferase WD_RS05515 PF01218 Coproporphyrinogen III oxidase WD_RS05525 PF13614 AAA domain WD_RS05530 PF17762 HTH domain found in ParB protein WD_RS05530 PF02195 ParB-like nuclease domain WD_RS05545 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WD_RS05555 PF01050 Mannose-6-phosphate isomerase WD_RS05555 PF00483 Nucleotidyl transferase WD_RS05570 PF00483 Nucleotidyl transferase WD_RS05570 PF01050 Mannose-6-phosphate isomerase WD_RS05580 PF12704 MacB-like periplasmic core domain WD_RS05580 PF02687 FtsX-like permease family WD_RS05595 PF00231 ATP synthase WD_RS05600 PF01523 Putative modulator of DNA gyrase WD_RS05605 PF00313 'Cold-shock' DNA-binding domain WD_RS05610 PF00271 Helicase conserved C-terminal domain WD_RS05610 PF00270 DEAD/DEAH box helicase WD_RS05615 PF17871 AAA lid domain WD_RS05615 PF02861 Clp amino terminal domain, pathogenicity island component WD_RS05615 PF00004 ATPase family associated with various cellular activities (AAA) WD_RS05615 PF10431 C-terminal, D2-small domain, of ClpB protein WD_RS05615 PF07724 AAA domain (Cdc48 subfamily) WD_RS05620 PF01791 DeoC/LacD family aldolase WD_RS05630 PF01180 Dihydroorotate dehydrogenase WD_RS05635 PF00035 Double-stranded RNA binding motif WD_RS05635 PF14622 Ribonuclease-III-like WD_RS05645 PF13091 PLD-like domain WD_RS05665 PF00210 Ferritin-like domain WD_RS05675 PF00999 Sodium/hydrogen exchanger family WD_RS05675 PF02254 TrkA-N domain WD_RS05685 PF02223 Thymidylate kinase WD_RS05695 PF00004 ATPase family associated with various cellular activities (AAA) WD_RS05695 PF01434 Peptidase family M41 WD_RS05695 PF17862 AAA+ lid domain WD_RS05695 PF06480 FtsH Extracellular WD_RS05700 PF01171 PP-loop family WD_RS05705 PF00691 OmpA family WD_RS05730 PF00719 Inorganic pyrophosphatase WD_RS05740 PF00639 PPIC-type PPIASE domain WD_RS05740 PF09312 SurA N-terminal domain WD_RS05745 PF07992 Pyridine nucleotide-disulphide oxidoreductase WD_RS05770 PF03717 Penicillin-binding Protein dimerisation domain WD_RS05770 PF00905 Penicillin binding protein transpeptidase domain WD_RS05775 PF02401 LytB protein WD_RS05780 PF00183 Hsp90 protein WD_RS05790 PF00155 Aminotransferase class I and II WD_RS05800 PF08207 Elongation factor P (EF-P) KOW-like domain WD_RS05800 PF09285 Elongation factor P, C-terminal WD_RS05800 PF01132 Elongation factor P (EF-P) OB domain WD_RS05805 PF05239 PRC-barrel domain WD_RS05805 PF01782 RimM N-terminal domain WD_RS05810 PF00202 Aminotransferase class-III WD_RS05815 PF00512 His Kinase A (phospho-acceptor) domain WD_RS05815 PF00989 PAS fold WD_RS05815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WD_RS05820 PF00578 AhpC/TSA family WD_RS05825 PF02463 RecF/RecN/SMC N terminal domain WD_RS05845 PF03631 Virulence factor BrkB WD_RS05860 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WD_RS05860 PF02142 MGS-like domain WD_RS05860 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WD_RS05875 PF04545 Sigma-70, region 4 WD_RS05875 PF04539 Sigma-70 region 3 WD_RS05875 PF04542 Sigma-70 region 2 WD_RS05875 PF04546 Sigma-70, non-essential region WD_RS05875 PF00140 Sigma-70 factor, region 1.2 WD_RS05875 PF03979 Sigma-70 factor, region 1.1 WD_RS05880 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WD_RS05890 PF13244 Domain of unknown function (DUF4040) WD_RS05890 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WD_RS05890 PF00361 Proton-conducting membrane transporter WD_RS05895 PF03334 Na+/H+ antiporter subunit WD_RS05905 PF01192 RNA polymerase Rpb6 WD_RS05915 PF00731 AIR carboxylase WD_RS05920 PF01119 DNA mismatch repair protein, C-terminal domain WD_RS05920 PF08676 MutL C terminal dimerisation domain WD_RS05925 PF00676 Dehydrogenase E1 component WD_RS05925 PF02779 Transketolase, pyrimidine binding domain WD_RS05925 PF16078 2-oxoglutarate dehydrogenase N-terminus WD_RS05925 PF16870 2-oxoglutarate dehydrogenase C-terminal WD_RS05945 PF02661 Fic/DOC family WD_RS05945 PF13784 Fic/DOC family N-terminal WD_RS05950 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase WD_RS05955 PF01040 UbiA prenyltransferase family WD_RS05960 PF02033 Ribosome-binding factor A WD_RS05965 PF11987 Translation-initiation factor 2 WD_RS05965 PF00009 Elongation factor Tu GTP binding domain WD_RS05965 PF04760 Translation initiation factor IF-2, N-terminal region WD_RS05970 PF13184 NusA-like KH domain WD_RS05970 PF08529 NusA N-terminal domain WD_RS05970 PF00575 S1 RNA binding domain WD_RS05975 PF00873 AcrB/AcrD/AcrF family WD_RS05985 PF00120 Glutamine synthetase, catalytic domain WD_RS06045 PF01548 Transposase WD_RS06045 PF02371 Transposase IS116/IS110/IS902 family WD_RS06140 PF00348 Polyprenyl synthetase