locus-tag	class	description
WOO_RS00010	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
WOO_RS00050	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
WOO_RS00055	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
WOO_RS00065	COG0194	GDP metabolic process
WOO_RS00090	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
WOO_RS00095	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
WOO_RS00110	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
WOO_RS00120	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
WOO_RS00125	COG1034	ATP synthesis coupled electron transport
WOO_RS00145	COG1573	uracil-dna glycosylase
WOO_RS00150	COG0242	peptide deformylase activity
WOO_RS00155	COG0849	cell division
WOO_RS00160	COG1160	GTP binding
WOO_RS00175	COG0495	leucyl-tRNA aminoacylation
WOO_RS00185	COG0356	it plays a direct role in the translocation of protons across the membrane
WOO_RS00190	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
WOO_RS00215	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
WOO_RS00235	COG2171	N-acyltransferase activity
WOO_RS00240	COG0772	Belongs to the SEDS family
WOO_RS00245	COG0651	ATP synthesis coupled electron transport
WOO_RS00260	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
WOO_RS00265	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
WOO_RS00270	COG3932	Exopolysaccharide synthesis, ExoD
WOO_RS00275	COG0215	cysteine-tRNA ligase activity
WOO_RS00285	COG0126	phosphoglycerate kinase activity
WOO_RS00290	COG0492	ferredoxin-NADP+ reductase activity
WOO_RS00300	COG0355	proton-transporting ATP synthase activity, rotational mechanism
WOO_RS00310	COG0573	inorganic phosphate transmembrane transporter activity
WOO_RS00315	COG0594	ribonuclease P activity
WOO_RS00345	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
WOO_RS00350	COG0322	excinuclease ABC activity
WOO_RS00360	COG0752	glycyl-tRNA synthetase alpha subunit
WOO_RS00370	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
WOO_RS00375	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
WOO_RS00380	COG0493	'glutamate synthase
WOO_RS00380	COG0543	2 iron, 2 sulfur cluster binding
WOO_RS00390	COG0187	DNA topoisomerase II activity
WOO_RS00400	COG3474	cytochrome
WOO_RS00435	COG0114	fumarate hydratase activity
WOO_RS00440	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
WOO_RS00450	COG3451	type IV secretory pathway VirB4
WOO_RS00455	COG3704	protein secretion by the type IV secretion system
WOO_RS00460	COG3704	protein secretion by the type IV secretion system
WOO_RS00480	COG0742	ribosomal rna small subunit methyltransferase
WOO_RS00485	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
WOO_RS00500	COG3088	subunit of a heme lyase
WOO_RS00520	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
WOO_RS00530	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
WOO_RS00535	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
WOO_RS00550	COG0250	Participates in transcription elongation, termination and antitermination
WOO_RS00555	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
WOO_RS00560	COG0081	regulation of translation
WOO_RS00565	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
WOO_RS00570	COG0222	ribosome binding
WOO_RS00575	COG0085	RNA polymerase activity
WOO_RS00575	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
WOO_RS00580	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
WOO_RS00580	COG0085	RNA polymerase activity
WOO_RS00585	COG0024	Methionine aminopeptidase
WOO_RS00595	COG1278	Cold shock
WOO_RS00600	COG0312	modulator of DNA gyrase
WOO_RS00605	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
WOO_RS00615	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
WOO_RS00625	COG1758	RNA polymerase activity
WOO_RS00640	COG2111	Na H antiporter
WOO_RS00640	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
WOO_RS00655	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
WOO_RS00670	COG0193	aminoacyl-tRNA hydrolase activity
WOO_RS00675	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
WOO_RS00690	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
WOO_RS00705	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
WOO_RS00710	COG0649	NAD binding
WOO_RS00730	COG0259	pyridoxamine-phosphate oxidase activity
WOO_RS00735	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
WOO_RS00750	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
WOO_RS00755	COG4133	protoheme IX ABC transporter activity
WOO_RS00765	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
WOO_RS00770	COG0477	Major facilitator Superfamily
WOO_RS00785	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
WOO_RS00790	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
WOO_RS00800	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
WOO_RS00810	COG0473	3-isopropylmalate dehydrogenase activity
WOO_RS00860	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
WOO_RS00865	COG0653	protein targeting
WOO_RS00870	COG0508	dehydrogenase complex catalyzes the overall conversion of
WOO_RS00895	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
WOO_RS00900	COG0612	Peptidase, M16
WOO_RS00910	COG2070	2-Nitropropane dioxygenase
WOO_RS00920	COG3451	type IV secretory pathway VirB4
WOO_RS00935	COG0508	dehydrogenase complex catalyzes the overall conversion of
WOO_RS00945	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
WOO_RS00950	COG0142	geranyltranstransferase activity
WOO_RS00955	COG0228	four-way junction DNA binding
WOO_RS00965	COG0552	protein localization to endoplasmic reticulum
WOO_RS00970	COG0822	iron-sulfur transferase activity
WOO_RS00975	COG0316	Belongs to the HesB IscA family
WOO_RS00985	COG0443	Heat shock 70 kDa protein
WOO_RS01000	COG4536	flavin adenine dinucleotide binding
WOO_RS01010	COG0163	prenyltransferase activity
WOO_RS01020	COG0768	penicillin binding
WOO_RS01030	COG0442	prolyl-tRNA aminoacylation
WOO_RS01035	COG0736	holo-[acyl-carrier-protein] synthase activity
WOO_RS01040	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
WOO_RS01045	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
WOO_RS01070	COG0723	plastoquinol--plastocyanin reductase activity
WOO_RS01075	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
WOO_RS01080	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
WOO_RS01090	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
WOO_RS01105	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
WOO_RS01110	COG1054	Belongs to the UPF0176 family
WOO_RS01115	COG1178	ABC-type Fe3 transport system permease component
WOO_RS01125	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
WOO_RS01130	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
WOO_RS01160	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
WOO_RS01170	COG1007	ATP synthesis coupled electron transport
WOO_RS01175	COG0493	'glutamate synthase
WOO_RS01175	COG0543	2 iron, 2 sulfur cluster binding
WOO_RS01180	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
WOO_RS01195	COG0750	zinc metalloprotease
WOO_RS01205	COG0539	negative regulation of cytoplasmic translation
WOO_RS01230	COG0101	tRNA pseudouridine synthase activity
WOO_RS01240	COG1674	ftsk spoiiie
WOO_RS01245	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
WOO_RS01250	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
WOO_RS01265	COG0470	DNA polymerase III
WOO_RS01275	COG1862	Preprotein translocase
WOO_RS01280	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
WOO_RS01290	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
WOO_RS01295	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
WOO_RS01300	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
WOO_RS01310	COG1230	cation diffusion facilitator family transporter
WOO_RS01330	COG1840	ABC-type Fe3 transport system, periplasmic component
WOO_RS01340	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
WOO_RS01345	COG0254	rRNA binding
WOO_RS01350	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
WOO_RS01355	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
WOO_RS01360	COG0275	rRNA processing
WOO_RS01375	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
WOO_RS01400	COG0321	lipoyl(octanoyl) transferase activity
WOO_RS01405	COG0047	phosphoribosylformylglycinamidine synthase activity
WOO_RS01420	COG0336	Belongs to the RNA methyltransferase TrmD family
WOO_RS01425	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
WOO_RS01430	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
WOO_RS01445	COG1253	flavin adenine dinucleotide binding
WOO_RS01450	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
WOO_RS01455	COG0436	Aminotransferase
WOO_RS01470	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
WOO_RS01490	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
WOO_RS01500	COG0519	Catalyzes the synthesis of GMP from XMP
WOO_RS01500	COG0518	GMP synthase (glutamine-hydrolyzing) activity
WOO_RS01505	COG1253	flavin adenine dinucleotide binding
WOO_RS01510	COG1863	multisubunit Na H antiporter MnhE subunit
WOO_RS01525	COG0612	Peptidase, M16
WOO_RS01530	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
WOO_RS01540	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
WOO_RS01550	COG2094	Belongs to the DNA glycosylase MPG family
WOO_RS01565	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
WOO_RS01570	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
WOO_RS01575	COG1115	amino acid carrier protein
WOO_RS01580	COG1183	phosphatidylcholine synthase activity
WOO_RS01585	COG0688	phosphatidylethanolamine metabolic process
WOO_RS01590	COG0149	triose-phosphate isomerase activity
WOO_RS01600	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
WOO_RS01610	COG0343	queuine tRNA-ribosyltransferase activity
WOO_RS01630	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
WOO_RS01635	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
WOO_RS01645	COG0154	amidase activity
WOO_RS01655	COG0571	ribonuclease III activity
WOO_RS01660	COG0167	dihydroorotate dehydrogenase activity
WOO_RS01670	COG1830	Aldolase
WOO_RS01705	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
WOO_RS01710	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
WOO_RS01715	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
WOO_RS01725	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
WOO_RS01735	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
WOO_RS01740	COG0218	Necessary for normal cell division and for the maintenance of normal septation
WOO_RS01745	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
WOO_RS01750	COG0756	dUTP diphosphatase activity
WOO_RS01770	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
WOO_RS01785	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
WOO_RS01790	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
WOO_RS01795	COG0745	RESPONSE REGULATOR receiver
WOO_RS01800	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
WOO_RS01825	COG0156	8-amino-7-oxononanoate synthase activity
WOO_RS01835	COG0326	Molecular chaperone. Has ATPase activity
WOO_RS01855	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
WOO_RS01865	COG2885	chlorophyll binding
WOO_RS01885	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
WOO_RS01890	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
WOO_RS01910	COG0805	protein transport
WOO_RS01915	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
WOO_RS01920	COG1217	gtp-binding protein TYPA
WOO_RS01925	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
WOO_RS01930	COG2239	Acts as a magnesium transporter
WOO_RS01935	COG0022	dehydrogenase e1 component
WOO_RS01935	COG0508	dehydrogenase complex catalyzes the overall conversion of
WOO_RS01940	COG0484	heat shock protein binding
WOO_RS01960	COG0284	orotidine-5'-phosphate decarboxylase activity
WOO_RS01965	COG0525	valine-tRNA ligase activity
WOO_RS01975	COG1686	Belongs to the peptidase S11 family
WOO_RS01980	COG0072	phenylalanine-tRNA ligase activity
WOO_RS01980	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
WOO_RS01990	COG1714	RDD family
WOO_RS02000	COG0305	Participates in initiation and elongation during chromosome replication
WOO_RS02005	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
WOO_RS02010	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
WOO_RS02020	COG1322	Protein conserved in bacteria
WOO_RS02025	COG0354	folic acid binding
WOO_RS02035	COG0459	protein refolding
WOO_RS02065	COG0330	HflC and HflK could
WOO_RS02110	COG0312	modulator of DNA gyrase
WOO_RS02120	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
WOO_RS02120	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
WOO_RS02125	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
WOO_RS02145	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
WOO_RS02155	COG0105	UTP biosynthetic process
WOO_RS02165	COG1121	(ABC) transporter
WOO_RS02170	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
WOO_RS02175	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
WOO_RS02180	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
WOO_RS02205	COG0481	GTPase activity
WOO_RS02220	COG0739	heme binding
WOO_RS02230	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
WOO_RS02235	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
WOO_RS02240	COG0280	phosphate acetyltransferase
WOO_RS02240	COG0281	malic enzyme
WOO_RS02250	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
WOO_RS02255	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
WOO_RS02260	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
WOO_RS02260	COG2857	Cytochrome c1
WOO_RS02265	COG0556	nucleotide-excision repair
WOO_RS02280	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
WOO_RS02280	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
WOO_RS02300	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
WOO_RS02315	COG2902	Dehydrogenase
WOO_RS02320	COG0542	response to heat
WOO_RS02325	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
WOO_RS02330	COG0227	Belongs to the bacterial ribosomal protein bL28 family
WOO_RS02355	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
WOO_RS02365	COG1138	Cytochrome C-type biogenesis protein
WOO_RS02385	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
WOO_RS02395	COG0424	maF-like protein
WOO_RS02410	COG3505	Type IV secretory pathway VirD4
WOO_RS02415	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
WOO_RS02430	COG3736	Type IV secretory pathway, component VirB8
WOO_RS02450	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
WOO_RS02455	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
WOO_RS02460	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
WOO_RS02470	COG0124	histidyl-tRNA synthetase
WOO_RS02480	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
WOO_RS02490	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
WOO_RS02495	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
WOO_RS02525	COG0285	dihydrofolate synthase activity
WOO_RS02535	COG0527	aspartate kinase activity
WOO_RS02555	COG0494	nUDIX hydrolase
WOO_RS02560	COG0084	hydrolase, TatD family'
WOO_RS02570	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
WOO_RS02575	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
WOO_RS02580	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
WOO_RS02585	COG0537	adenosine 5'-monophosphoramidase activity
WOO_RS02605	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
WOO_RS02610	COG1185	polyribonucleotide nucleotidyltransferase activity
WOO_RS02615	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
WOO_RS02620	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
WOO_RS02630	COG1104	cysteine desulfurase activity
WOO_RS02635	COG2945	thiolester hydrolase activity
WOO_RS02645	COG0316	Belongs to the HesB IscA family
WOO_RS02650	COG0232	Belongs to the dGTPase family. Type 2 subfamily
WOO_RS02655	COG0445	tRNA wobble uridine modification
WOO_RS02670	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
WOO_RS02675	COG0416	fatty acid biosynthetic process
WOO_RS02680	COG0333	Belongs to the bacterial ribosomal protein bL32 family
WOO_RS02685	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
WOO_RS02695	COG1007	ATP synthesis coupled electron transport
WOO_RS02700	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
WOO_RS02705	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
WOO_RS02710	COG0713	ATP synthesis coupled electron transport
WOO_RS02715	COG0839	Belongs to the complex I subunit 6 family
WOO_RS02725	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
WOO_RS02735	COG0257	Belongs to the bacterial ribosomal protein bL36 family
WOO_RS02745	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
WOO_RS02750	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
WOO_RS02765	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
WOO_RS02775	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
WOO_RS02795	COG1104	cysteine desulfurase activity
WOO_RS02800	COG0113	porphobilinogen synthase activity
WOO_RS02805	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
WOO_RS02810	COG0629	single-stranded DNA binding
WOO_RS02825	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
WOO_RS02830	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
WOO_RS02855	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
WOO_RS02860	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
WOO_RS02865	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
WOO_RS02875	COG1132	(ABC) transporter
WOO_RS02885	COG0018	arginyl-trna synthetase
WOO_RS02895	COG0564	pseudouridine synthase activity
WOO_RS02900	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
WOO_RS02905	COG1981	membrane
WOO_RS02940	COG1108	ABC-type Mn2 Zn2 transport systems permease components
WOO_RS02950	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
WOO_RS02955	COG1074	ATP-dependent DNA helicase activity
WOO_RS02965	COG0504	CTP synthase activity
WOO_RS02970	COG0590	tRNA wobble adenosine to inosine editing
WOO_RS02975	COG0477	Major facilitator Superfamily
WOO_RS02985	COG0626	cystathionine gamma-synthase activity
WOO_RS02995	COG1845	cytochrome c oxidase, subunit III
WOO_RS03000	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
WOO_RS03010	COG0211	Belongs to the bacterial ribosomal protein bL27 family
WOO_RS03015	COG0261	This protein binds to 23S rRNA in the presence of protein L20
WOO_RS03020	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
WOO_RS03030	COG1530	ribonuclease E activity
WOO_RS03035	COG0267	Belongs to the bacterial ribosomal protein bL33 family
WOO_RS03055	COG0359	binds to the 23S rRNA
WOO_RS03060	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
WOO_RS03065	COG0360	Binds together with S18 to 16S ribosomal RNA
WOO_RS03105	COG0045	succinate-CoA ligase (ADP-forming) activity
WOO_RS03115	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
WOO_RS03125	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
WOO_RS03135	COG0372	Belongs to the citrate synthase family
WOO_RS03160	COG0628	permease
WOO_RS03165	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
WOO_RS03170	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
WOO_RS03175	COG0740	serine-type endopeptidase activity
WOO_RS03180	COG0544	peptidyl-prolyl cis-trans isomerase activity
WOO_RS03205	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
WOO_RS03210	COG0567	Dehydrogenase, E1 component
WOO_RS03220	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
WOO_RS03225	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
WOO_RS03235	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
WOO_RS03240	COG0174	glutamine synthetase
WOO_RS03245	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
WOO_RS03250	COG2814	Major facilitator Superfamily
WOO_RS03255	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
WOO_RS03265	COG0617	tRNA 3'-terminal CCA addition
WOO_RS03270	COG0012	GTP binding
WOO_RS03280	COG1494	fructose-1,6-bisphosphatase
WOO_RS03285	COG0574	Belongs to the PEP-utilizing enzyme family
WOO_RS03285	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
WOO_RS03305	COG0575	Belongs to the CDS family
WOO_RS03320	COG0233	cytoplasmic translational termination
WOO_RS03325	COG0528	UMP kinase activity
WOO_RS03330	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
WOO_RS03335	COG0052	Belongs to the universal ribosomal protein uS2 family
WOO_RS03355	COG1295	ribonuclease BN
WOO_RS03365	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
WOO_RS03390	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
WOO_RS03395	COG2009	succinate dehydrogenase
WOO_RS03415	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
WOO_RS03420	COG0670	Belongs to the BI1 family
WOO_RS03425	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
WOO_RS03440	COG0202	RNA polymerase activity
WOO_RS03445	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
WOO_RS03450	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
WOO_RS03455	COG0563	adenylate kinase activity
WOO_RS03465	COG0200	Binds to the 23S rRNA
WOO_RS03470	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
WOO_RS03475	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
WOO_RS03485	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
WOO_RS03490	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
WOO_RS03505	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
WOO_RS03510	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
WOO_RS03520	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
WOO_RS03525	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
WOO_RS03530	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
WOO_RS03535	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
WOO_RS03540	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
WOO_RS03550	COG0088	Forms part of the polypeptide exit tunnel
WOO_RS03555	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
WOO_RS03565	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
WOO_RS03580	COG0505	Belongs to the CarA family
WOO_RS03590	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
WOO_RS03595	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
WOO_RS03630	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
WOO_RS03635	COG0450	alkyl hydroperoxide reductase
WOO_RS03640	COG0492	ferredoxin-NADP+ reductase activity
WOO_RS03665	COG4770	biotin carboxylase activity