locus-tag class description CO539_RS00005 PF01208 Uroporphyrinogen decarboxylase (URO-D) CO539_RS00010 PF00155 Aminotransferase class I and II CO539_RS00015 PF00893 Small Multidrug Resistance protein CO539_RS00030 PF00464 Serine hydroxymethyltransferase CO539_RS00035 PF00162 Phosphoglycerate kinase CO539_RS00050 PF00834 Ribulose-phosphate 3 epimerase family CO539_RS00060 PF00312 Ribosomal protein S15 CO539_RS00065 PF16198 tRNA pseudouridylate synthase B C-terminal domain CO539_RS00065 PF01509 TruB family pseudouridylate synthase (N terminal domain) CO539_RS00070 PF00665 Integrase core domain CO539_RS00070 PF13276 HTH-like domain CO539_RS00070 PF13333 Integrase core domain CO539_RS00075 PF01527 Transposase CO539_RS00085 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS00090 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CO539_RS00090 PF01872 RibD C-terminal domain CO539_RS00095 PF13286 Phosphohydrolase-associated domain CO539_RS00095 PF01966 HD domain CO539_RS00100 PF01521 Iron-sulphur cluster biosynthesis CO539_RS00105 PF00005 ABC transporter CO539_RS00115 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CO539_RS00120 PF00266 Aminotransferase class-V CO539_RS00125 PF01027 Inhibitor of apoptosis-promoting Bax1 CO539_RS00130 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CO539_RS00145 PF00107 Zinc-binding dehydrogenase CO539_RS00145 PF08240 Alcohol dehydrogenase GroES-like domain CO539_RS00150 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS00175 PF02401 LytB protein CO539_RS00200 PF00436 Single-strand binding protein family CO539_RS00205 PF00701 Dihydrodipicolinate synthetase family CO539_RS00220 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS00230 PF01926 50S ribosome-binding GTPase CO539_RS00230 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CO539_RS00240 PF01039 Carboxyl transferase domain CO539_RS00290 PF00579 tRNA synthetases class I (W and Y) CO539_RS00305 PF00171 Aldehyde dehydrogenase family CO539_RS00315 PF00293 NUDIX domain CO539_RS00320 PF01026 TatD related DNase CO539_RS00325 PF00056 lactate/malate dehydrogenase, NAD binding domain CO539_RS00325 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CO539_RS00330 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CO539_RS00335 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CO539_RS00340 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CO539_RS00345 PF01230 HIT domain CO539_RS00360 PF08245 Mur ligase middle domain CO539_RS00360 PF02875 Mur ligase family, glutamate ligase domain CO539_RS00360 PF01225 Mur ligase family, catalytic domain CO539_RS00365 PF08338 Domain of unknown function (DUF1731) CO539_RS00365 PF01370 NAD dependent epimerase/dehydratase family CO539_RS00375 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CO539_RS00375 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CO539_RS00380 PF02504 Fatty acid synthesis protein CO539_RS00385 PF01783 Ribosomal L32p protein family CO539_RS00390 PF02405 Permease MlaE CO539_RS00395 PF00005 ABC transporter CO539_RS00400 PF02881 SRP54-type protein, helical bundle domain CO539_RS00400 PF02978 Signal peptide binding domain CO539_RS00400 PF00448 SRP54-type protein, GTPase domain CO539_RS00415 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO539_RS00420 PF07977 FabA-like domain CO539_RS00430 PF07244 Surface antigen variable number repeat CO539_RS00430 PF01103 Surface antigen CO539_RS00435 PF02163 Peptidase family M50 CO539_RS00435 PF17820 PDZ domain CO539_RS00450 PF00216 Bacterial DNA-binding protein CO539_RS00455 PF00575 S1 RNA binding domain CO539_RS00460 PF02390 Putative methyltransferase CO539_RS00480 PF13276 HTH-like domain CO539_RS00480 PF00665 Integrase core domain CO539_RS00480 PF13333 Integrase core domain CO539_RS00500 PF01678 Diaminopimelate epimerase CO539_RS00505 PF02629 CoA binding domain CO539_RS00505 PF00549 CoA-ligase CO539_RS00510 PF00549 CoA-ligase CO539_RS00510 PF08442 ATP-grasp domain CO539_RS00525 PF04452 RNA methyltransferase CO539_RS00545 PF01218 Coproporphyrinogen III oxidase CO539_RS00550 PF00072 Response regulator receiver domain CO539_RS00550 PF13188 PAS domain CO539_RS00550 PF08448 PAS fold CO539_RS00550 PF00512 His Kinase A (phospho-acceptor) domain CO539_RS00550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO539_RS00555 PF13614 AAA domain CO539_RS00560 PF02195 ParB-like nuclease domain CO539_RS00560 PF17762 HTH domain found in ParB protein CO539_RS00565 PF02542 YgbB family CO539_RS00565 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CO539_RS00580 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS00590 PF01782 RimM N-terminal domain CO539_RS00590 PF05239 PRC-barrel domain CO539_RS00595 PF08207 Elongation factor P (EF-P) KOW-like domain CO539_RS00595 PF01132 Elongation factor P (EF-P) OB domain CO539_RS00595 PF09285 Elongation factor P, C-terminal CO539_RS00605 PF00155 Aminotransferase class I and II CO539_RS00615 PF00183 Hsp90 protein CO539_RS00630 PF13662 Toprim domain CO539_RS00630 PF02132 RecR protein CO539_RS00650 PF17764 3′ DNA-binding domain (3′BD) CO539_RS00650 PF18074 Primosomal protein N C-terminal domain CO539_RS00650 PF00271 Helicase conserved C-terminal domain CO539_RS00650 PF00270 DEAD/DEAH box helicase CO539_RS00650 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CO539_RS00660 PF13606 Ankyrin repeat CO539_RS00660 PF12796 Ankyrin repeats (3 copies) CO539_RS00665 PF02511 Thymidylate synthase complementing protein CO539_RS00670 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CO539_RS00675 PF02801 Beta-ketoacyl synthase, C-terminal domain CO539_RS00675 PF00109 Beta-ketoacyl synthase, N-terminal domain CO539_RS00680 PF00550 Phosphopantetheine attachment site CO539_RS00685 PF00348 Polyprenyl synthetase CO539_RS00695 PF00004 ATPase family associated with various cellular activities (AAA) CO539_RS00695 PF07724 AAA domain (Cdc48 subfamily) CO539_RS00695 PF10431 C-terminal, D2-small domain, of ClpB protein CO539_RS00700 PF00227 Proteasome subunit CO539_RS00715 PF00762 Ferrochelatase CO539_RS00725 PF00334 Nucleoside diphosphate kinase CO539_RS00730 PF00202 Aminotransferase class-III CO539_RS00735 PF01595 Cyclin M transmembrane N-terminal domain CO539_RS00735 PF03471 Transporter associated domain CO539_RS00735 PF00571 CBS domain CO539_RS00740 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CO539_RS00745 PF02441 Flavoprotein CO539_RS00750 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CO539_RS00750 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CO539_RS00765 PF00133 tRNA synthetases class I (I, L, M and V) CO539_RS00765 PF08264 Anticodon-binding domain of tRNA CO539_RS00765 PF09334 tRNA synthetases class I (M) CO539_RS00765 PF13603 Leucyl-tRNA synthetase, Domain 2 CO539_RS00770 PF01551 Peptidase family M23 CO539_RS00775 PF13411 MerR HTH family regulatory protein CO539_RS00780 PF00216 Bacterial DNA-binding protein CO539_RS00870 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS00885 PF03099 Biotin/lipoate A/B protein ligase family CO539_RS00890 PF17676 LD-carboxypeptidase C-terminal domain CO539_RS00890 PF02016 LD-carboxypeptidase N-terminal domain CO539_RS00900 PF07733 Bacterial DNA polymerase III alpha NTPase domain CO539_RS00900 PF02811 PHP domain CO539_RS00900 PF14579 Helix-hairpin-helix motif CO539_RS00900 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CO539_RS00905 PF01250 Ribosomal protein S6 CO539_RS00910 PF01084 Ribosomal protein S18 CO539_RS00915 PF03948 Ribosomal protein L9, C-terminal domain CO539_RS00915 PF01281 Ribosomal protein L9, N-terminal domain CO539_RS00920 PF10397 Adenylosuccinate lyase C-terminus CO539_RS00920 PF00206 Lyase CO539_RS00935 PF00665 Integrase core domain CO539_RS00935 PF13333 Integrase core domain CO539_RS00935 PF13276 HTH-like domain CO539_RS00940 PF01527 Transposase CO539_RS00945 PF13685 Iron-containing alcohol dehydrogenase CO539_RS00950 PF01546 Peptidase family M20/M25/M40 CO539_RS00950 PF07687 Peptidase dimerisation domain CO539_RS00990 PF00186 Dihydrofolate reductase CO539_RS00995 PF00809 Pterin binding enzyme CO539_RS00995 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CO539_RS01000 PF02152 Dihydroneopterin aldolase CO539_RS01005 PF03070 TENA/THI-4/PQQC family CO539_RS01055 PF00085 Thioredoxin CO539_RS01060 PF01612 3'-5' exonuclease CO539_RS01060 PF00570 HRDC domain CO539_RS01075 PF07650 KH domain CO539_RS01075 PF01926 50S ribosome-binding GTPase CO539_RS01100 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS01115 PF00032 Cytochrome b(C-terminal)/b6/petD CO539_RS01115 PF00033 Cytochrome b/b6/petB CO539_RS01120 PF00033 Cytochrome b/b6/petB CO539_RS01120 PF02167 Cytochrome C1 family CO539_RS01120 PF00032 Cytochrome b(C-terminal)/b6/petD CO539_RS01125 PF04851 Type III restriction enzyme, res subunit CO539_RS01125 PF12344 Ultra-violet resistance protein B CO539_RS01125 PF02151 UvrB/uvrC motif CO539_RS01125 PF17757 UvrB interaction domain CO539_RS01125 PF00271 Helicase conserved C-terminal domain CO539_RS01145 PF01556 DnaJ C terminal domain CO539_RS01145 PF00226 DnaJ domain CO539_RS01145 PF00684 DnaJ central domain CO539_RS01155 PF03129 Anticodon binding domain CO539_RS01155 PF13393 Histidyl-tRNA synthetase CO539_RS01160 PF01975 Survival protein SurE CO539_RS01170 PF13520 Amino acid permease CO539_RS01175 PF00324 Amino acid permease CO539_RS01185 PF01118 Semialdehyde dehydrogenase, NAD binding domain CO539_RS01185 PF02774 Semialdehyde dehydrogenase, dimerisation domain CO539_RS01190 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CO539_RS01190 PF02222 ATP-grasp domain CO539_RS01195 PF04379 ApaG domain CO539_RS01200 PF00528 Binding-protein-dependent transport system inner membrane component CO539_RS01205 PF00581 Rhodanese-like domain CO539_RS01205 PF17773 UPF0176 acylphosphatase like domain CO539_RS01250 PF01921 tRNA synthetases class I (K) CO539_RS01260 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO539_RS01265 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO539_RS01270 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO539_RS01275 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO539_RS01280 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO539_RS01315 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS01320 PF17768 RecJ OB domain CO539_RS01320 PF02272 DHHA1 domain CO539_RS01320 PF01368 DHH family CO539_RS01325 PF04055 Radical SAM superfamily CO539_RS01325 PF01938 TRAM domain CO539_RS01325 PF00919 Uncharacterized protein family UPF0004 CO539_RS01330 PF08264 Anticodon-binding domain of tRNA CO539_RS01330 PF00133 tRNA synthetases class I (I, L, M and V) CO539_RS01340 PF03147 Ferredoxin-fold anticodon binding domain CO539_RS01340 PF01588 Putative tRNA binding domain CO539_RS01340 PF03484 tRNA synthetase B5 domain CO539_RS01340 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CO539_RS01340 PF03483 B3/4 domain CO539_RS01350 PF00119 ATP synthase A chain CO539_RS01355 PF00137 ATP synthase subunit C CO539_RS01375 PF02628 Cytochrome oxidase assembly protein CO539_RS01380 PF00364 Biotin-requiring enzyme CO539_RS01380 PF00289 Biotin carboxylase, N-terminal domain CO539_RS01380 PF02785 Biotin carboxylase C-terminal domain CO539_RS01380 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CO539_RS01380 PF18140 Propionyl-coenzyme A carboxylase BT domain CO539_RS01390 PF00749 tRNA synthetases class I (E and Q), catalytic domain CO539_RS01395 PF00011 Hsp20/alpha crystallin family CO539_RS01400 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CO539_RS01410 PF00380 Ribosomal protein S9/S16 CO539_RS01415 PF00572 Ribosomal protein L13 CO539_RS01420 PF02321 Outer membrane efflux protein CO539_RS01425 PF10691 Protein of unknown function (DUF2497) CO539_RS01430 PF01728 FtsJ-like methyltransferase CO539_RS01455 PF01702 Queuine tRNA-ribosyltransferase CO539_RS01465 PF00675 Insulinase (Peptidase family M16) CO539_RS01465 PF05193 Peptidase M16 inactive domain CO539_RS01470 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CO539_RS01470 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CO539_RS01500 PF03023 Lipid II flippase MurJ CO539_RS01515 PF01134 Glucose inhibited division protein A CO539_RS01515 PF13932 GidA associated domain CO539_RS01520 PF00557 Metallopeptidase family M24 CO539_RS01520 PF01321 Creatinase/Prolidase N-terminal domain CO539_RS01555 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO539_RS01570 PF03060 Nitronate monooxygenase CO539_RS01580 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CO539_RS01590 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS01625 PF00072 Response regulator receiver domain CO539_RS01625 PF00486 Transcriptional regulatory protein, C terminal CO539_RS01630 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CO539_RS01630 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CO539_RS01635 PF04608 Phosphatidylglycerophosphatase A CO539_RS01650 PF13085 2Fe-2S iron-sulfur cluster binding domain CO539_RS01655 PF02130 Uncharacterized protein family UPF0054 CO539_RS01665 PF12327 FtsZ family, C-terminal domain CO539_RS01665 PF00091 Tubulin/FtsZ family, GTPase domain CO539_RS01690 PF01522 Polysaccharide deacetylase CO539_RS01695 PF03717 Penicillin-binding Protein dimerisation domain CO539_RS01695 PF00905 Penicillin binding protein transpeptidase domain CO539_RS01700 PF00004 ATPase family associated with various cellular activities (AAA) CO539_RS01700 PF05362 Lon protease (S16) C-terminal proteolytic domain CO539_RS01700 PF02190 ATP-dependent protease La (LON) substrate-binding domain CO539_RS01705 PF07724 AAA domain (Cdc48 subfamily) CO539_RS01705 PF10431 C-terminal, D2-small domain, of ClpB protein CO539_RS01705 PF06689 ClpX C4-type zinc finger CO539_RS01710 PF00574 Clp protease CO539_RS01715 PF05697 Bacterial trigger factor protein (TF) CO539_RS01715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CO539_RS01715 PF05698 Bacterial trigger factor protein (TF) C-terminus CO539_RS01725 PF04972 BON domain CO539_RS01740 PF05175 Methyltransferase small domain CO539_RS01740 PF17827 PrmC N-terminal domain CO539_RS01740 PF02390 Putative methyltransferase CO539_RS01745 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS01755 PF00164 Ribosomal protein S12/S23 CO539_RS01760 PF00177 Ribosomal protein S7p/S5e CO539_RS01765 PF03144 Elongation factor Tu domain 2 CO539_RS01765 PF00009 Elongation factor Tu GTP binding domain CO539_RS01765 PF03764 Elongation factor G, domain IV CO539_RS01765 PF14492 Elongation Factor G, domain II CO539_RS01765 PF00679 Elongation factor G C-terminus CO539_RS01770 PF03143 Elongation factor Tu C-terminal domain CO539_RS01770 PF03144 Elongation factor Tu domain 2 CO539_RS01770 PF00009 Elongation factor Tu GTP binding domain CO539_RS01785 PF02357 Transcription termination factor nusG CO539_RS01785 PF00467 KOW motif CO539_RS01790 PF03946 Ribosomal protein L11, N-terminal domain CO539_RS01790 PF00298 Ribosomal protein L11, RNA binding domain CO539_RS01795 PF00687 Ribosomal protein L1p/L10e family CO539_RS01800 PF00466 Ribosomal protein L10 CO539_RS01805 PF16320 Ribosomal protein L7/L12 dimerisation domain CO539_RS01805 PF00542 Ribosomal protein L7/L12 C-terminal domain CO539_RS01810 PF04560 RNA polymerase Rpb2, domain 7 CO539_RS01810 PF04997 RNA polymerase Rpb1, domain 1 CO539_RS01810 PF00623 RNA polymerase Rpb1, domain 2 CO539_RS01810 PF04983 RNA polymerase Rpb1, domain 3 CO539_RS01810 PF04998 RNA polymerase Rpb1, domain 5 CO539_RS01810 PF04563 RNA polymerase beta subunit CO539_RS01810 PF05000 RNA polymerase Rpb1, domain 4 CO539_RS01810 PF04561 RNA polymerase Rpb2, domain 2 CO539_RS01810 PF04565 RNA polymerase Rpb2, domain 3 CO539_RS01810 PF10385 RNA polymerase beta subunit external 1 domain CO539_RS01810 PF00562 RNA polymerase Rpb2, domain 6 CO539_RS01815 PF01207 Dihydrouridine synthase (Dus) CO539_RS01830 PF02843 Phosphoribosylglycinamide synthetase, C domain CO539_RS01830 PF02844 Phosphoribosylglycinamide synthetase, N domain CO539_RS01830 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CO539_RS01840 PF18324 Hypothetical protein TT1725 CO539_RS01840 PF00180 Isocitrate/isopropylmalate dehydrogenase CO539_RS01850 PF01527 Transposase CO539_RS01885 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS01935 PF14602 Hexapeptide repeat of succinyl-transferase CO539_RS01935 PF00132 Bacterial transferase hexapeptide (six repeats) CO539_RS01935 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CO539_RS01945 PF00890 FAD binding domain CO539_RS01945 PF02910 Fumarate reductase flavoprotein C-term CO539_RS01955 PF00625 Guanylate kinase CO539_RS01970 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CO539_RS01970 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CO539_RS01975 PF13416 Bacterial extracellular solute-binding protein CO539_RS01995 PF01513 ATP-NAD kinase CO539_RS02000 PF01197 Ribosomal protein L31 CO539_RS02005 PF00698 Acyl transferase domain CO539_RS02015 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CO539_RS02015 PF01676 Metalloenzyme superfamily CO539_RS02030 PF01411 tRNA synthetases class II (A) CO539_RS02030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CO539_RS02030 PF02272 DHHA1 domain CO539_RS02050 PF01632 Ribosomal protein L35 CO539_RS02055 PF00453 Ribosomal protein L20 CO539_RS02060 PF02911 Formyl transferase, C-terminal domain CO539_RS02060 PF00551 Formyl transferase CO539_RS02070 PF01808 AICARFT/IMPCHase bienzyme CO539_RS02070 PF02142 MGS-like domain CO539_RS02090 PF00633 Helix-hairpin-helix motif CO539_RS02090 PF00730 HhH-GPD superfamily base excision DNA repair protein CO539_RS02090 PF10576 Iron-sulfur binding domain of endonuclease III CO539_RS02105 PF08245 Mur ligase middle domain CO539_RS02120 PF08245 Mur ligase middle domain CO539_RS02120 PF02875 Mur ligase family, glutamate ligase domain CO539_RS02135 PF03364 Polyketide cyclase / dehydrase and lipid transport CO539_RS02140 PF13462 Thioredoxin CO539_RS02170 PF12169 DNA polymerase III subunits gamma and tau domain III CO539_RS02175 PF02575 YbaB/EbfC DNA-binding family CO539_RS02180 PF13505 Outer membrane protein beta-barrel domain CO539_RS02185 PF04542 Sigma-70 region 2 CO539_RS02185 PF04545 Sigma-70, region 4 CO539_RS02185 PF00140 Sigma-70 factor, region 1.2 CO539_RS02195 PF00712 DNA polymerase III beta subunit, N-terminal domain CO539_RS02195 PF02767 DNA polymerase III beta subunit, central domain CO539_RS02195 PF02768 DNA polymerase III beta subunit, C-terminal domain CO539_RS02200 PF01416 tRNA pseudouridine synthase CO539_RS02205 PF00154 recA bacterial DNA recombination protein CO539_RS02215 PF01195 Peptidyl-tRNA hydrolase CO539_RS02220 PF01386 Ribosomal L25p family CO539_RS02220 PF14693 Ribosomal protein TL5, C-terminal domain CO539_RS02240 PF01795 MraW methylase family CO539_RS02245 PF00083 Sugar (and other) transporter CO539_RS02245 PF07690 Major Facilitator Superfamily CO539_RS02250 PF00557 Metallopeptidase family M24 CO539_RS02255 PF02491 SHS2 domain inserted in FTSA CO539_RS02260 PF01327 Polypeptide deformylase CO539_RS02265 PF03167 Uracil DNA glycosylase superfamily CO539_RS02270 PF03232 Ubiquinone biosynthesis protein COQ7 CO539_RS02280 PF13537 Glutamine amidotransferase domain CO539_RS02280 PF00156 Phosphoribosyl transferase domain CO539_RS02295 PF03631 Virulence factor BrkB CO539_RS02305 PF02142 MGS-like domain CO539_RS02305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CO539_RS02305 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CO539_RS02315 PF00849 RNA pseudouridylate synthase CO539_RS02325 PF00753 Metallo-beta-lactamase superfamily CO539_RS02325 PF03772 Competence protein CO539_RS02345 PF02223 Thymidylate kinase CO539_RS02355 PF00999 Sodium/hydrogen exchanger family CO539_RS02355 PF02254 TrkA-N domain CO539_RS02360 PF00696 Amino acid kinase family CO539_RS02360 PF01842 ACT domain CO539_RS02360 PF13840 ACT domain CO539_RS02365 PF02463 RecF/RecN/SMC N terminal domain CO539_RS02370 PF00578 AhpC/TSA family CO539_RS02375 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CO539_RS02375 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CO539_RS02380 PF03033 Glycosyltransferase family 28 N-terminal domain CO539_RS02380 PF04101 Glycosyltransferase family 28 C-terminal domain CO539_RS02390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO539_RS02390 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO539_RS02410 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS02435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO539_RS02440 PF09312 SurA N-terminal domain CO539_RS02450 PF00719 Inorganic pyrophosphatase CO539_RS02475 PF00691 OmpA family CO539_RS02480 PF01171 PP-loop family CO539_RS02485 PF06480 FtsH Extracellular CO539_RS02485 PF17862 AAA+ lid domain CO539_RS02485 PF00004 ATPase family associated with various cellular activities (AAA) CO539_RS02485 PF01434 Peptidase family M41 CO539_RS02490 PF01434 Peptidase family M41 CO539_RS02490 PF00004 ATPase family associated with various cellular activities (AAA) CO539_RS02490 PF17862 AAA+ lid domain CO539_RS02490 PF06480 FtsH Extracellular CO539_RS02500 PF00004 ATPase family associated with various cellular activities (AAA) CO539_RS02500 PF17862 AAA+ lid domain CO539_RS02500 PF06480 FtsH Extracellular CO539_RS02500 PF01434 Peptidase family M41 CO539_RS02525 PF02817 e3 binding domain CO539_RS02525 PF00364 Biotin-requiring enzyme CO539_RS02525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CO539_RS02555 PF00664 ABC transporter transmembrane region CO539_RS02555 PF00005 ABC transporter CO539_RS02565 PF00814 Glycoprotease family CO539_RS02575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO539_RS02575 PF00989 PAS fold CO539_RS02575 PF13188 PAS domain CO539_RS02575 PF13426 PAS domain CO539_RS02575 PF00512 His Kinase A (phospho-acceptor) domain CO539_RS02580 PF00202 Aminotransferase class-III CO539_RS02595 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS02610 PF01594 AI-2E family transporter CO539_RS02620 PF00589 Phage integrase family CO539_RS02620 PF02899 Phage integrase, N-terminal SAM-like domain CO539_RS02630 PF01649 Ribosomal protein S20 CO539_RS02635 PF00285 Citrate synthase, C-terminal domain CO539_RS02665 PF17864 RuvB AAA lid domain CO539_RS02665 PF05496 Holliday junction DNA helicase RuvB P-loop domain CO539_RS02665 PF05491 RuvB C-terminal winged helix domain CO539_RS02670 PF07499 RuvA, C-terminal domain CO539_RS02670 PF01330 RuvA N terminal domain CO539_RS02675 PF00034 Cytochrome c CO539_RS02685 PF00580 UvrD/REP helicase N-terminal domain CO539_RS02685 PF13361 UvrD-like helicase C-terminal domain CO539_RS02695 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CO539_RS02700 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CO539_RS02710 PF00361 Proton-conducting membrane transporter CO539_RS02715 PF00361 Proton-conducting membrane transporter CO539_RS02720 PF02237 Biotin protein ligase C terminal domain CO539_RS02720 PF03099 Biotin/lipoate A/B protein ligase family CO539_RS02725 PF03100 CcmE CO539_RS02800 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS02830 PF17871 AAA lid domain CO539_RS02830 PF07724 AAA domain (Cdc48 subfamily) CO539_RS02830 PF00004 ATPase family associated with various cellular activities (AAA) CO539_RS02830 PF02861 Clp amino terminal domain, pathogenicity island component CO539_RS02830 PF10431 C-terminal, D2-small domain, of ClpB protein CO539_RS02835 PF05088 Bacterial NAD-glutamate dehydrogenase CO539_RS02845 PF00990 Diguanylate cyclase, GGDEF domain CO539_RS02845 PF00072 Response regulator receiver domain CO539_RS02850 PF11967 Recombination protein O N terminal CO539_RS02850 PF02565 Recombination protein O C terminal CO539_RS02890 PF03796 DnaB-like helicase C terminal domain CO539_RS02890 PF00772 DnaB-like helicase N terminal domain CO539_RS02915 PF01040 UbiA prenyltransferase family CO539_RS02920 PF02033 Ribosome-binding factor A CO539_RS02925 PF11987 Translation-initiation factor 2 CO539_RS02925 PF04760 Translation initiation factor IF-2, N-terminal region CO539_RS02925 PF00009 Elongation factor Tu GTP binding domain CO539_RS02930 PF08529 NusA N-terminal domain CO539_RS02930 PF00575 S1 RNA binding domain CO539_RS02930 PF13184 NusA-like KH domain CO539_RS02955 PF00120 Glutamine synthetase, catalytic domain CO539_RS02960 PF11638 DnaA N-terminal domain CO539_RS02960 PF08299 Bacterial dnaA protein helix-turn-helix CO539_RS02960 PF00308 Bacterial dnaA protein CO539_RS02965 PF02355 Protein export membrane protein CO539_RS02965 PF07549 SecD/SecF GG Motif CO539_RS02980 PF14849 YidC periplasmic domain CO539_RS02980 PF02096 60Kd inner membrane protein CO539_RS02985 PF00885 6,7-dimethyl-8-ribityllumazine synthase CO539_RS02990 PF01029 NusB family CO539_RS03000 PF00692 dUTPase CO539_RS03010 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03020 PF10417 C-terminal domain of 1-Cys peroxiredoxin CO539_RS03020 PF00578 AhpC/TSA family CO539_RS03025 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO539_RS03035 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03075 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03100 PF03109 ABC1 family CO539_RS03105 PF00005 ABC transporter CO539_RS03110 PF01297 Zinc-uptake complex component A periplasmic CO539_RS03125 PF00471 Ribosomal protein L33 CO539_RS03130 PF10150 Ribonuclease E/G family CO539_RS03130 PF12111 Polyribonucleotide phosphorylase C terminal CO539_RS03130 PF00575 S1 RNA binding domain CO539_RS03135 PF00012 Hsp70 protein CO539_RS03140 PF01722 BolA-like protein CO539_RS03145 PF01053 Cys/Met metabolism PLP-dependent enzyme CO539_RS03150 PF02875 Mur ligase family, glutamate ligase domain CO539_RS03150 PF08245 Mur ligase middle domain CO539_RS03165 PF01300 Telomere recombination CO539_RS03170 PF12169 DNA polymerase III subunits gamma and tau domain III CO539_RS03185 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CO539_RS03185 PF13244 Domain of unknown function (DUF4040) CO539_RS03185 PF00361 Proton-conducting membrane transporter CO539_RS03190 PF00772 DnaB-like helicase N terminal domain CO539_RS03190 PF03796 DnaB-like helicase C terminal domain CO539_RS03200 PF06271 RDD family CO539_RS03220 PF01979 Amidohydrolase family CO539_RS03225 PF01612 3'-5' exonuclease CO539_RS03225 PF00570 HRDC domain CO539_RS03230 PF01121 Dephospho-CoA kinase CO539_RS03240 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03245 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03260 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03280 PF12796 Ankyrin repeats (3 copies) CO539_RS03285 PF00268 Ribonucleotide reductase, small chain CO539_RS03300 PF09334 tRNA synthetases class I (M) CO539_RS03300 PF08264 Anticodon-binding domain of tRNA CO539_RS03305 PF01527 Transposase CO539_RS03310 PF13276 HTH-like domain CO539_RS03310 PF00665 Integrase core domain CO539_RS03310 PF13333 Integrase core domain CO539_RS03320 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03350 PF00902 Sec-independent protein translocase protein (TatC) CO539_RS03355 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CO539_RS03355 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CO539_RS03375 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03395 PF01743 Poly A polymerase head domain CO539_RS03395 PF12627 Probable RNA and SrmB- binding site of polymerase A CO539_RS03395 PF13735 tRNA nucleotidyltransferase domain 2 putative CO539_RS03400 PF00679 Elongation factor G C-terminus CO539_RS03400 PF03144 Elongation factor Tu domain 2 CO539_RS03400 PF00009 Elongation factor Tu GTP binding domain CO539_RS03405 PF00749 tRNA synthetases class I (E and Q), catalytic domain CO539_RS03420 PF00950 ABC 3 transport family CO539_RS03430 PF08544 GHMP kinases C terminal CO539_RS03430 PF00288 GHMP kinases N terminal domain CO539_RS03435 PF13361 UvrD-like helicase C-terminal domain CO539_RS03435 PF12705 PD-(D/E)XK nuclease superfamily CO539_RS03435 PF00580 UvrD/REP helicase N-terminal domain CO539_RS03475 PF00111 2Fe-2S iron-sulfur cluster binding domain CO539_RS03490 PF01807 CHC2 zinc finger CO539_RS03490 PF08275 DNA primase catalytic core, N-terminal domain CO539_RS03490 PF13662 Toprim domain CO539_RS03495 PF08241 Methyltransferase domain CO539_RS03505 PF00814 Glycoprotease family CO539_RS03530 PF01258 Prokaryotic dksA/traR C4-type zinc finger CO539_RS03535 PF00684 DnaJ central domain CO539_RS03535 PF01556 DnaJ C terminal domain CO539_RS03535 PF00226 DnaJ domain CO539_RS03545 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03560 PF08245 Mur ligase middle domain CO539_RS03560 PF02875 Mur ligase family, glutamate ligase domain CO539_RS03560 PF01225 Mur ligase family, catalytic domain CO539_RS03565 PF03330 Lytic transglycolase CO539_RS03575 PF01494 FAD binding domain CO539_RS03590 PF01467 Cytidylyltransferase-like CO539_RS03605 PF01255 Putative undecaprenyl diphosphate synthase CO539_RS03615 PF00364 Biotin-requiring enzyme CO539_RS03615 PF02817 e3 binding domain CO539_RS03615 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CO539_RS03620 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03655 PF01926 50S ribosome-binding GTPase CO539_RS03655 PF06071 Protein of unknown function (DUF933) CO539_RS03665 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CO539_RS03680 PF00005 ABC transporter CO539_RS03685 PF02416 mttA/Hcf106 family CO539_RS03695 PF06055 Exopolysaccharide synthesis, ExoD CO539_RS03700 PF09190 DALR domain CO539_RS03700 PF01406 tRNA synthetases class I (C) catalytic domain CO539_RS03715 PF00075 RNase H CO539_RS03720 PF01040 UbiA prenyltransferase family CO539_RS03725 PF00115 Cytochrome C and Quinol oxidase polypeptide I CO539_RS03730 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CO539_RS03730 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CO539_RS03735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CO539_RS03735 PF00529 HlyD membrane-fusion protein of T1SS CO539_RS03740 PF03653 Uncharacterised protein family (UPF0093) CO539_RS03745 PF00676 Dehydrogenase E1 component CO539_RS03750 PF02637 GatB domain CO539_RS03750 PF02934 GatB/GatE catalytic domain CO539_RS03765 PF00589 Phage integrase family CO539_RS03765 PF02899 Phage integrase, N-terminal SAM-like domain CO539_RS03770 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO539_RS03770 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO539_RS03780 PF00115 Cytochrome C and Quinol oxidase polypeptide I CO539_RS03790 PF08264 Anticodon-binding domain of tRNA CO539_RS03790 PF00133 tRNA synthetases class I (I, L, M and V) CO539_RS03805 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CO539_RS03830 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03850 PF05173 Dihydrodipicolinate reductase, C-terminus CO539_RS03850 PF01113 Dihydrodipicolinate reductase, N-terminus CO539_RS03855 PF00005 ABC transporter CO539_RS03875 PF13288 DXP reductoisomerase C-terminal domain CO539_RS03875 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CO539_RS03875 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CO539_RS03890 PF01527 Transposase CO539_RS03900 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03910 PF13333 Integrase core domain CO539_RS03910 PF13276 HTH-like domain CO539_RS03910 PF00665 Integrase core domain CO539_RS03920 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CO539_RS03920 PF03129 Anticodon binding domain CO539_RS03925 PF01648 4'-phosphopantetheinyl transferase superfamily CO539_RS03950 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS03990 PF01235 Sodium:alanine symporter family CO539_RS04005 PF02545 Maf-like protein CO539_RS04010 PF01176 Translation initiation factor 1A / IF-1 CO539_RS04020 PF00709 Adenylosuccinate synthetase CO539_RS04035 PF00696 Amino acid kinase family CO539_RS04040 PF01926 50S ribosome-binding GTPase CO539_RS04045 PF00472 RF-1 domain CO539_RS04045 PF03462 PCRF domain CO539_RS04080 PF07690 Major Facilitator Superfamily CO539_RS04095 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS04105 PF04551 GcpE protein CO539_RS04110 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS04135 PF09397 Ftsk gamma domain CO539_RS04135 PF01580 FtsK/SpoIIIE family CO539_RS04135 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CO539_RS04135 PF17854 FtsK alpha domain CO539_RS04140 PF02325 YGGT family CO539_RS04145 PF01527 Transposase CO539_RS04150 PF13276 HTH-like domain CO539_RS04150 PF00665 Integrase core domain CO539_RS04150 PF13333 Integrase core domain CO539_RS04165 PF13276 HTH-like domain CO539_RS04165 PF00665 Integrase core domain CO539_RS04165 PF13333 Integrase core domain CO539_RS04170 PF01527 Transposase CO539_RS04175 PF01018 GTP1/OBG CO539_RS04175 PF01926 50S ribosome-binding GTPase CO539_RS04180 PF03952 Enolase, N-terminal domain CO539_RS04180 PF00113 Enolase, C-terminal TIM barrel domain CO539_RS04190 PF02875 Mur ligase family, glutamate ligase domain CO539_RS04190 PF01225 Mur ligase family, catalytic domain CO539_RS04190 PF08245 Mur ligase middle domain CO539_RS04195 PF02104 SURF1 family CO539_RS04200 PF00210 Ferritin-like domain CO539_RS04235 PF00206 Lyase CO539_RS04235 PF10415 Fumarase C C-terminus CO539_RS04250 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CO539_RS04250 PF02769 AIR synthase related protein, C-terminal domain CO539_RS04250 PF00586 AIR synthase related protein, N-terminal domain CO539_RS04270 PF00684 DnaJ central domain CO539_RS04270 PF01556 DnaJ C terminal domain CO539_RS04270 PF00226 DnaJ domain CO539_RS04275 PF12706 Beta-lactamase superfamily domain CO539_RS04275 PF17770 Ribonuclease J C-terminal domain CO539_RS04275 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CO539_RS04285 PF07676 WD40-like Beta Propeller Repeat CO539_RS04290 PF02686 Glu-tRNAGln amidotransferase C subunit CO539_RS04295 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CO539_RS04295 PF14572 Phosphoribosyl synthetase-associated domain CO539_RS04300 PF02779 Transketolase, pyrimidine binding domain CO539_RS04300 PF02780 Transketolase, C-terminal domain CO539_RS04300 PF00456 Transketolase, thiamine diphosphate binding domain CO539_RS04305 PF00163 Ribosomal protein S4/S9 N-terminal domain CO539_RS04305 PF01479 S4 domain CO539_RS04315 PF04384 Iron-sulphur cluster assembly CO539_RS04325 PF00830 Ribosomal L28 family CO539_RS04330 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CO539_RS04330 PF04055 Radical SAM superfamily CO539_RS04340 PF00929 Exonuclease CO539_RS04365 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS04390 PF06480 FtsH Extracellular CO539_RS04390 PF01434 Peptidase family M41 CO539_RS04390 PF00004 ATPase family associated with various cellular activities (AAA) CO539_RS04390 PF17862 AAA+ lid domain CO539_RS04420 PF00364 Biotin-requiring enzyme CO539_RS04420 PF02779 Transketolase, pyrimidine binding domain CO539_RS04420 PF02780 Transketolase, C-terminal domain CO539_RS04430 PF10502 Signal peptidase, peptidase S26 CO539_RS04435 PF00012 Hsp70 protein CO539_RS04440 PF07743 HSCB C-terminal oligomerisation domain CO539_RS04440 PF00226 DnaJ domain CO539_RS04445 PF01521 Iron-sulphur cluster biosynthesis CO539_RS04450 PF01592 NifU-like N terminal domain CO539_RS04455 PF02881 SRP54-type protein, helical bundle domain CO539_RS04455 PF00448 SRP54-type protein, GTPase domain CO539_RS04480 PF01571 Aminomethyltransferase folate-binding domain CO539_RS04485 PF00166 Chaperonin 10 Kd subunit CO539_RS04490 PF00118 TCP-1/cpn60 chaperonin family CO539_RS04505 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS04515 PF18073 Rubredoxin metal binding domain CO539_RS04520 PF00083 Sugar (and other) transporter CO539_RS04520 PF07690 Major Facilitator Superfamily CO539_RS04530 PF01131 DNA topoisomerase CO539_RS04530 PF01751 Toprim domain CO539_RS04530 PF01396 Topoisomerase DNA binding C4 zinc finger CO539_RS04530 PF13368 Topoisomerase C-terminal repeat CO539_RS04550 PF02534 Type IV secretory system Conjugative DNA transfer CO539_RS04555 PF00437 Type II/IV secretion system protein CO539_RS04570 PF04335 VirB8 protein CO539_RS04575 PF00925 GTP cyclohydrolase II CO539_RS04595 PF00692 dUTPase CO539_RS04600 PF02386 Cation transport protein CO539_RS04615 PF01765 Ribosome recycling factor CO539_RS04625 PF00889 Elongation factor TS CO539_RS04630 PF00318 Ribosomal protein S2 CO539_RS04640 PF02699 Preprotein translocase subunit CO539_RS04645 PF01380 SIS domain CO539_RS04665 PF00101 Ribulose bisphosphate carboxylase, small chain CO539_RS04665 PF00132 Bacterial transferase hexapeptide (six repeats) CO539_RS04675 PF06418 CTP synthase N-terminus CO539_RS04675 PF00117 Glutamine amidotransferase class-I CO539_RS04685 PF14437 MafB19-like deaminase CO539_RS04695 PF00005 ABC transporter CO539_RS04700 PF00750 tRNA synthetases class I (R) CO539_RS04700 PF05746 DALR anticodon binding domain CO539_RS04700 PF03485 Arginyl tRNA synthetase N terminal domain CO539_RS04715 PF00664 ABC transporter transmembrane region CO539_RS04715 PF00005 ABC transporter CO539_RS04720 PF01209 ubiE/COQ5 methyltransferase family CO539_RS04725 PF07690 Major Facilitator Superfamily CO539_RS04760 PF00462 Glutaredoxin CO539_RS04770 PF01515 Phosphate acetyl/butaryl transferase CO539_RS04770 PF03949 Malic enzyme, NAD binding domain CO539_RS04770 PF00390 Malic enzyme, N-terminal domain CO539_RS04775 PF01066 CDP-alcohol phosphatidyltransferase CO539_RS04790 PF01709 Transcriptional regulator CO539_RS04795 PF08525 Opacity-associated protein A N-terminal motif CO539_RS04795 PF01551 Peptidase family M23 CO539_RS04795 PF01476 LysM domain CO539_RS04830 PF02896 PEP-utilising enzyme, TIM barrel domain CO539_RS04830 PF00391 PEP-utilising enzyme, mobile domain CO539_RS04830 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CO539_RS04835 PF04002 RadC-like JAB domain CO539_RS04945 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CO539_RS04945 PF00925 GTP cyclohydrolase II CO539_RS04950 PF03449 Transcription elongation factor, N-terminal CO539_RS04950 PF01272 Transcription elongation factor, GreA/GreB, C-term CO539_RS04955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO539_RS04955 PF00306 ATP synthase alpha/beta chain, C terminal domain CO539_RS04955 PF02874 ATP synthase alpha/beta family, beta-barrel domain CO539_RS04960 PF00213 ATP synthase delta (OSCP) subunit CO539_RS04965 PF02021 Uncharacterised protein family UPF0102 CO539_RS04970 PF01196 Ribosomal protein L17 CO539_RS04975 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CO539_RS04975 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CO539_RS04975 PF01000 RNA polymerase Rpb3/RpoA insert domain CO539_RS04980 PF00411 Ribosomal protein S11 CO539_RS04985 PF00416 Ribosomal protein S13/S18 CO539_RS04995 PF00344 SecY translocase CO539_RS05000 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CO539_RS05005 PF03719 Ribosomal protein S5, C-terminal domain CO539_RS05005 PF00333 Ribosomal protein S5, N-terminal domain CO539_RS05010 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CO539_RS05015 PF00347 Ribosomal protein L6 CO539_RS05020 PF00410 Ribosomal protein S8 CO539_RS05025 PF00253 Ribosomal protein S14p/S29e CO539_RS05030 PF00281 Ribosomal protein L5 CO539_RS05030 PF00673 ribosomal L5P family C-terminus CO539_RS05035 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CO539_RS05040 PF00238 Ribosomal protein L14p/L23e CO539_RS05045 PF00366 Ribosomal protein S17 CO539_RS05050 PF00831 Ribosomal L29 protein CO539_RS05055 PF00252 Ribosomal protein L16p/L10e CO539_RS05060 PF07650 KH domain CO539_RS05060 PF00189 Ribosomal protein S3, C-terminal domain CO539_RS05065 PF00237 Ribosomal protein L22p/L17e CO539_RS05070 PF00203 Ribosomal protein S19 CO539_RS05075 PF00181 Ribosomal Proteins L2, RNA binding domain CO539_RS05075 PF03947 Ribosomal Proteins L2, C-terminal domain CO539_RS05080 PF00276 Ribosomal protein L23 CO539_RS05085 PF00573 Ribosomal protein L4/L1 family CO539_RS05090 PF00297 Ribosomal protein L3 CO539_RS05095 PF00338 Ribosomal protein S10p/S20e CO539_RS05100 PF03143 Elongation factor Tu C-terminal domain CO539_RS05100 PF03144 Elongation factor Tu domain 2 CO539_RS05100 PF00009 Elongation factor Tu GTP binding domain CO539_RS05115 PF00117 Glutamine amidotransferase class-I CO539_RS05115 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CO539_RS05125 PF00923 Transaldolase/Fructose-6-phosphate aldolase CO539_RS05140 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS05155 PF00829 Ribosomal prokaryotic L21 protein CO539_RS05160 PF01016 Ribosomal L27 protein CO539_RS05170 PF02773 S-adenosylmethionine synthetase, C-terminal domain CO539_RS05170 PF02772 S-adenosylmethionine synthetase, central domain CO539_RS05170 PF00438 S-adenosylmethionine synthetase, N-terminal domain CO539_RS05175 PF03070 TENA/THI-4/PQQC family CO539_RS05185 PF00510 Cytochrome c oxidase subunit III CO539_RS05190 PF02075 Crossover junction endodeoxyribonuclease RuvC CO539_RS05195 PF03652 Holliday junction resolvase CO539_RS05200 PF03477 ATP cone domain CO539_RS05200 PF02867 Ribonucleotide reductase, barrel domain CO539_RS05200 PF00317 Ribonucleotide reductase, all-alpha domain CO539_RS05225 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS05240 PF00825 Ribonuclease P CO539_RS05245 PF00468 Ribosomal protein L34 CO539_RS05250 PF00528 Binding-protein-dependent transport system inner membrane component CO539_RS05255 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO539_RS05255 PF02874 ATP synthase alpha/beta family, beta-barrel domain CO539_RS05260 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CO539_RS05275 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS05295 PF12804 MobA-like NTP transferase domain CO539_RS05295 PF14602 Hexapeptide repeat of succinyl-transferase CO539_RS05295 PF00132 Bacterial transferase hexapeptide (six repeats) CO539_RS05300 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CO539_RS05300 PF01409 tRNA synthetases class II core domain (F) CO539_RS05310 PF00677 Lumazine binding domain CO539_RS05320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CO539_RS05320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CO539_RS05320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CO539_RS05320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CO539_RS05355 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS05365 PF00476 DNA polymerase family A CO539_RS05365 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CO539_RS05365 PF01367 5'-3' exonuclease, C-terminal SAM fold CO539_RS05370 PF01425 Amidase CO539_RS05395 PF02666 Phosphatidylserine decarboxylase CO539_RS05400 PF01066 CDP-alcohol phosphatidyltransferase CO539_RS05405 PF01235 Sodium:alanine symporter family CO539_RS05410 PF01235 Sodium:alanine symporter family CO539_RS05415 PF02660 Glycerol-3-phosphate acyltransferase CO539_RS05425 PF01545 Cation efflux family CO539_RS05450 PF08032 RNA 2'-O ribose methyltransferase substrate binding CO539_RS05450 PF00588 SpoU rRNA Methylase family CO539_RS05460 PF02151 UvrB/uvrC motif CO539_RS05460 PF01541 GIY-YIG catalytic domain CO539_RS05460 PF08459 UvrC Helix-hairpin-helix N-terminal CO539_RS05465 PF05746 DALR anticodon binding domain CO539_RS05465 PF02092 Glycyl-tRNA synthetase beta subunit CO539_RS05470 PF02091 Glycyl-tRNA synthetase alpha subunit CO539_RS05485 PF01527 Transposase CO539_RS05490 PF13276 HTH-like domain CO539_RS05490 PF00665 Integrase core domain CO539_RS05490 PF13333 Integrase core domain CO539_RS05495 PF00490 Delta-aminolevulinic acid dehydratase CO539_RS05500 PF00146 NADH dehydrogenase CO539_RS05505 PF00384 Molybdopterin oxidoreductase CO539_RS05505 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CO539_RS05505 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CO539_RS05515 PF00883 Cytosol aminopeptidase family, catalytic domain CO539_RS05515 PF02789 Cytosol aminopeptidase family, N-terminal domain CO539_RS05525 PF01619 Proline dehydrogenase CO539_RS05525 PF14850 DNA-binding domain of Proline dehydrogenase CO539_RS05525 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CO539_RS05525 PF00171 Aldehyde dehydrogenase family CO539_RS05530 PF00330 Aconitase family (aconitate hydratase) CO539_RS05530 PF00694 Aconitase C-terminal domain CO539_RS05535 PF02556 Preprotein translocase subunit SecB CO539_RS05545 PF00929 Exonuclease CO539_RS05550 PF02630 SCO1/SenC CO539_RS05560 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS05575 PF00035 Double-stranded RNA binding motif CO539_RS05575 PF14622 Ribonuclease-III-like CO539_RS05580 PF01180 Dihydroorotate dehydrogenase CO539_RS05595 PF01791 DeoC/LacD family aldolase CO539_RS05605 PF07724 AAA domain (Cdc48 subfamily) CO539_RS05605 PF17871 AAA lid domain CO539_RS05605 PF10431 C-terminal, D2-small domain, of ClpB protein CO539_RS05605 PF02861 Clp amino terminal domain, pathogenicity island component CO539_RS05605 PF00004 ATPase family associated with various cellular activities (AAA) CO539_RS05610 PF00271 Helicase conserved C-terminal domain CO539_RS05610 PF00270 DEAD/DEAH box helicase CO539_RS05615 PF00313 'Cold-shock' DNA-binding domain CO539_RS05620 PF01523 Putative modulator of DNA gyrase CO539_RS05625 PF00231 ATP synthase CO539_RS05640 PF12704 MacB-like periplasmic core domain CO539_RS05640 PF02687 FtsX-like permease family CO539_RS05665 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CO539_RS05670 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CO539_RS05695 PF04542 Sigma-70 region 2 CO539_RS05695 PF04545 Sigma-70, region 4 CO539_RS05695 PF00140 Sigma-70 factor, region 1.2 CO539_RS05695 PF03979 Sigma-70 factor, region 1.1 CO539_RS05695 PF04539 Sigma-70 region 3 CO539_RS05695 PF04546 Sigma-70, non-essential region CO539_RS05700 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CO539_RS05710 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CO539_RS05710 PF13244 Domain of unknown function (DUF4040) CO539_RS05710 PF00361 Proton-conducting membrane transporter CO539_RS05725 PF01192 RNA polymerase Rpb6 CO539_RS05735 PF00731 AIR carboxylase CO539_RS05740 PF01119 DNA mismatch repair protein, C-terminal domain CO539_RS05740 PF08676 MutL C terminal dimerisation domain CO539_RS05750 PF01145 SPFH domain / Band 7 family CO539_RS05755 PF01145 SPFH domain / Band 7 family CO539_RS05760 PF13180 PDZ domain CO539_RS05875 PF00121 Triosephosphate isomerase CO539_RS05885 PF00398 Ribosomal RNA adenine dimethylase CO539_RS05890 PF00571 CBS domain CO539_RS05890 PF00478 IMP dehydrogenase / GMP reductase domain CO539_RS05895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO539_RS05895 PF07498 Rho termination factor, N-terminal domain CO539_RS05895 PF07497 Rho termination factor, RNA-binding domain CO539_RS05910 PF00886 Ribosomal protein S16 CO539_RS05915 PF00348 Polyprenyl synthetase CO539_RS05920 PF01025 GrpE CO539_RS05925 PF00579 tRNA synthetases class I (W and Y) CO539_RS05945 PF01527 Transposase CO539_RS05950 PF00665 Integrase core domain CO539_RS05950 PF13276 HTH-like domain CO539_RS05950 PF13333 Integrase core domain CO539_RS05955 PF00676 Dehydrogenase E1 component CO539_RS05955 PF16870 2-oxoglutarate dehydrogenase C-terminal CO539_RS05955 PF16078 2-oxoglutarate dehydrogenase N-terminus CO539_RS05955 PF02779 Transketolase, pyrimidine binding domain CO539_RS05995 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CO539_RS06000 PF13091 PLD-like domain CO539_RS06030 PF01790 Prolipoprotein diacylglyceryl transferase CO539_RS06035 PF01668 SmpB protein CO539_RS06055 PF00551 Formyl transferase CO539_RS06065 PF00675 Insulinase (Peptidase family M16) CO539_RS06065 PF05193 Peptidase M16 inactive domain CO539_RS06070 PF01252 Signal peptidase (SPase) II CO539_RS06075 PF01687 Riboflavin kinase CO539_RS06075 PF06574 FAD synthetase CO539_RS06080 PF00462 Glutaredoxin CO539_RS06090 PF14492 Elongation Factor G, domain II CO539_RS06090 PF00009 Elongation factor Tu GTP binding domain CO539_RS06090 PF03144 Elongation factor Tu domain 2 CO539_RS06090 PF06421 GTP-binding protein LepA C-terminus CO539_RS06090 PF00679 Elongation factor G C-terminus CO539_RS06105 PF03741 Integral membrane protein TerC family CO539_RS06105 PF03471 Transporter associated domain CO539_RS06110 PF02540 NAD synthase CO539_RS06110 PF00958 GMP synthase C terminal domain CO539_RS06110 PF00117 Glutamine amidotransferase class-I CO539_RS06115 PF00263 Bacterial type II and III secretion system protein CO539_RS06115 PF03958 Bacterial type II/III secretion system short domain CO539_RS06135 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS06145 PF01578 Cytochrome C assembly protein CO539_RS06150 PF03618 Kinase/pyrophosphorylase CO539_RS06155 PF00444 Ribosomal protein L36 CO539_RS06175 PF00271 Helicase conserved C-terminal domain CO539_RS06175 PF00270 DEAD/DEAH box helicase CO539_RS06175 PF17191 RecG wedge domain CO539_RS06205 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS06220 PF00919 Uncharacterized protein family UPF0004 CO539_RS06220 PF04055 Radical SAM superfamily CO539_RS06230 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS06255 PF02355 Protein export membrane protein CO539_RS06265 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CO539_RS06265 PF03900 Porphobilinogen deaminase, C-terminal domain CO539_RS06270 PF01565 FAD binding domain CO539_RS06270 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CO539_RS06275 PF00375 Sodium:dicarboxylate symporter family CO539_RS06280 PF00156 Phosphoribosyl transferase domain CO539_RS06300 PF00533 BRCA1 C Terminus (BRCT) domain CO539_RS06300 PF03120 NAD-dependent DNA ligase OB-fold domain CO539_RS06300 PF12826 Helix-hairpin-helix motif CO539_RS06300 PF01653 NAD-dependent DNA ligase adenylation domain CO539_RS06335 PF07478 D-ala D-ala ligase C-terminus CO539_RS06335 PF01820 D-ala D-ala ligase N-terminus CO539_RS06350 PF00037 4Fe-4S binding domain CO539_RS06350 PF11953 Domain of unknown function (DUF3470) CO539_RS06355 PF02481 DNA recombination-mediator protein A CO539_RS06355 PF17782 DprA winged helix domain CO539_RS06375 PF01043 SecA preprotein cross-linking domain CO539_RS06375 PF07516 SecA Wing and Scaffold domain CO539_RS06375 PF07517 SecA DEAD-like domain CO539_RS06375 PF02810 SEC-C motif CO539_RS06395 PF02646 RmuC family CO539_RS06400 PF00768 D-alanyl-D-alanine carboxypeptidase CO539_RS06400 PF07943 Penicillin-binding protein 5, C-terminal domain CO539_RS06405 PF04002 RadC-like JAB domain CO539_RS06420 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CO539_RS06420 PF01578 Cytochrome C assembly protein CO539_RS06430 PF00488 MutS domain V CO539_RS06430 PF05190 MutS family domain IV CO539_RS06430 PF05188 MutS domain II CO539_RS06430 PF01624 MutS domain I CO539_RS06430 PF05192 MutS domain III CO539_RS06440 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS06455 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS06465 PF00571 CBS domain CO539_RS06465 PF03448 MgtE intracellular N domain CO539_RS06465 PF01769 Divalent cation transporter CO539_RS06485 PF00849 RNA pseudouridylate synthase CO539_RS06485 PF01479 S4 domain CO539_RS06490 PF00083 Sugar (and other) transporter CO539_RS06490 PF08946 Osmosensory transporter coiled coil CO539_RS06510 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS06525 PF01336 OB-fold nucleic acid binding domain CO539_RS06525 PF00152 tRNA synthetases class II (D, K and N) CO539_RS06525 PF02938 GAD domain CO539_RS06540 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS06560 PF00083 Sugar (and other) transporter CO539_RS06560 PF08946 Osmosensory transporter coiled coil CO539_RS06565 PF00849 RNA pseudouridylate synthase CO539_RS06565 PF01479 S4 domain CO539_RS06585 PF01769 Divalent cation transporter CO539_RS06585 PF03448 MgtE intracellular N domain CO539_RS06585 PF00571 CBS domain CO539_RS06595 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS06675 PF04002 RadC-like JAB domain CO539_RS06695 PF01734 Patatin-like phospholipase CO539_RS06700 PF13091 PLD-like domain CO539_RS06725 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CO539_RS06725 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CO539_RS06725 PF10531 SLBB domain CO539_RS06730 PF05198 Translation initiation factor IF-3, N-terminal domain CO539_RS06730 PF00707 Translation initiation factor IF-3, C-terminal domain CO539_RS06735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CO539_RS06735 PF03129 Anticodon binding domain CO539_RS06735 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CO539_RS06745 PF12838 4Fe-4S dicluster domain CO539_RS06750 PF12631 MnmE helical domain CO539_RS06750 PF01926 50S ribosome-binding GTPase CO539_RS06750 PF10396 GTP-binding protein TrmE N-terminus CO539_RS06760 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO539_RS06775 PF00953 Glycosyl transferase family 4 CO539_RS06780 PF01351 Ribonuclease HII CO539_RS06800 PF00586 AIR synthase related protein, N-terminal domain CO539_RS06800 PF02769 AIR synthase related protein, C-terminal domain CO539_RS06805 PF01259 SAICAR synthetase CO539_RS06810 PF01746 tRNA (Guanine-1)-methyltransferase CO539_RS06815 PF01245 Ribosomal protein L19 CO539_RS06820 PF00528 Binding-protein-dependent transport system inner membrane component CO539_RS06835 PF01243 Pyridoxamine 5'-phosphate oxidase CO539_RS06835 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CO539_RS06840 PF06827 Zinc finger found in FPG and IleRS CO539_RS06840 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CO539_RS06840 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CO539_RS06875 PF10609 NUBPL iron-transfer P-loop NTPase CO539_RS06890 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS06925 PF00361 Proton-conducting membrane transporter CO539_RS06930 PF01098 Cell cycle protein CO539_RS06935 PF00266 Aminotransferase class-V CO539_RS06960 PF08671 Anti-repressor SinI CO539_RS06960 PF01381 Helix-turn-helix CO539_RS06965 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS06975 PF04002 RadC-like JAB domain CO539_RS06980 PF01381 Helix-turn-helix CO539_RS06985 PF08676 MutL C terminal dimerisation domain CO539_RS06985 PF01119 DNA mismatch repair protein, C-terminal domain CO539_RS06995 PF00132 Bacterial transferase hexapeptide (six repeats) CO539_RS06995 PF12804 MobA-like NTP transferase domain CO539_RS06995 PF14602 Hexapeptide repeat of succinyl-transferase CO539_RS07000 PF01370 NAD dependent epimerase/dehydratase family CO539_RS07020 PF00664 ABC transporter transmembrane region CO539_RS07020 PF00005 ABC transporter CO539_RS07025 PF01212 Beta-eliminating lyase CO539_RS07030 PF01212 Beta-eliminating lyase CO539_RS07040 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CO539_RS07040 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CO539_RS07040 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CO539_RS07045 PF00892 EamA-like transporter family CO539_RS07070 PF01523 Putative modulator of DNA gyrase CO539_RS07075 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CO539_RS07075 PF00355 Rieske [2Fe-2S] domain CO539_RS07080 PF00521 DNA gyrase/topoisomerase IV, subunit A CO539_RS07080 PF03989 DNA gyrase C-terminal domain, beta-propeller CO539_RS07100 PF02632 BioY family CO539_RS07105 PF00881 Nitroreductase family CO539_RS07115 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CO539_RS07130 PF00571 CBS domain CO539_RS07130 PF03471 Transporter associated domain