WS_RS00005	SM00382	ATPases associated with a variety of cellular activities
WS_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
WS_RS00010	SM00480	DNA polymerase III beta subunit
WS_RS00015	SM00387	Histidine kinase-like ATPases
WS_RS00015	SM00433	TopoisomeraseII
WS_RS00025	SM01207	WS_RS00025
WS_RS00030	SM00905	Dihydroneopterin aldolase
WS_RS00060	SM00448	cheY-homologous receiver domain
WS_RS00060	SM00862	Transcriptional regulatory protein, C terminal
WS_RS00065	SM00387	Histidine kinase-like ATPases
WS_RS00065	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS00075	SM00116	Domain in cystathionine beta-synthase and other proteins.
WS_RS00085	SM00387	Histidine kinase-like ATPases
WS_RS00085	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS00115	SM00267	diguanylate cyclase
WS_RS00150	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
WS_RS00250	SM00382	ATPases associated with a variety of cellular activities
WS_RS00255	SM00984	UDP binding domain
WS_RS00260	SM00448	cheY-homologous receiver domain
WS_RS00260	SM00862	Transcriptional regulatory protein, C terminal
WS_RS00275	SM00382	ATPases associated with a variety of cellular activities
WS_RS00275	SM00994	ClpX C4-type zinc finger
WS_RS00275	SM01086	C-terminal, D2-small domain, of ClpB protein
WS_RS00295	SM00729	Elongator protein 3, MiaB family, Radical SAM
WS_RS00310	SM00650	Ribosomal RNA adenine dimethylases
WS_RS00315	SM00849	Metallo-beta-lactamase superfamily
WS_RS00320	SM00116	Domain in cystathionine beta-synthase and other proteins.
WS_RS00340	SM00322	K homology RNA-binding domain
WS_RS00340	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
WS_RS00355	SM00382	ATPases associated with a variety of cellular activities
WS_RS00355	SM00962	SRP54-type protein, GTPase domain
WS_RS00360	SM00382	ATPases associated with a variety of cellular activities
WS_RS00370	SM00448	cheY-homologous receiver domain
WS_RS00370	SM00862	Transcriptional regulatory protein, C terminal
WS_RS00375	SM00387	Histidine kinase-like ATPases
WS_RS00375	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS00435	SM00244	prohibitin homologues
WS_RS00450	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS00460	SM00382	ATPases associated with a variety of cellular activities
WS_RS00460	SM00843	WS_RS00460
WS_RS00520	SM00382	ATPases associated with a variety of cellular activities
WS_RS00525	SM00937	WS_RS00525
WS_RS00535	SM00729	Elongator protein 3, MiaB family, Radical SAM
WS_RS00540	SM00342	helix_turn_helix, arabinose operon control protein
WS_RS00545	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
WS_RS00560	SM00448	cheY-homologous receiver domain
WS_RS00560	SM00862	Transcriptional regulatory protein, C terminal
WS_RS00565	SM00387	Histidine kinase-like ATPases
WS_RS00585	SM00052	Putative diguanylate phosphodiesterase
WS_RS00585	SM00267	diguanylate cyclase
WS_RS00590	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
WS_RS00600	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS00635	SM00881	CoA binding domain
WS_RS00680	SM00278	Helix-hairpin-helix DNA-binding motif class 1
WS_RS00685	SM01001	AIR carboxylase
WS_RS00715	SM00363	S4 RNA-binding domain
WS_RS00720	SM00060	Fibronectin type 3 domain
WS_RS00730	SM00382	ATPases associated with a variety of cellular activities
WS_RS00815	SM00849	Metallo-beta-lactamase superfamily
WS_RS00855	SM00919	Malic enzyme, NAD binding domain
WS_RS00855	SM01274	WS_RS00855
WS_RS00945	SM00836	DALR anticodon binding domain
WS_RS00945	SM01016	Arginyl tRNA synthetase N terminal dom
WS_RS00955	SM00072	Guanylate kinase homologues.
WS_RS00965	SM00155	Phospholipase D. Active site motifs.
WS_RS00975	SM00382	ATPases associated with a variety of cellular activities
WS_RS01010	SM00450	Rhodanese Homology Domain
WS_RS01055	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
WS_RS01055	SM00091	PAS domain
WS_RS01055	SM00387	Histidine kinase-like ATPases
WS_RS01055	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS01055	SM00448	cheY-homologous receiver domain
WS_RS01060	SM00448	cheY-homologous receiver domain
WS_RS01065	SM00448	cheY-homologous receiver domain
WS_RS01105	SM00479	WS_RS01105
WS_RS01150	SM00864	Tubulin/FtsZ family, GTPase domain
WS_RS01150	SM00865	Tubulin/FtsZ family, C-terminal domain
WS_RS01155	SM00842	Cell division protein FtsA
WS_RS01185	SM01409	WS_RS01185
WS_RS01190	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
WS_RS01190	SM00954	Region found in RelA / SpoT proteins
WS_RS01195	SM00363	S4 RNA-binding domain
WS_RS01205	SM00646	WS_RS01205
WS_RS01225	SM00382	ATPases associated with a variety of cellular activities
WS_RS01270	SM00382	ATPases associated with a variety of cellular activities
WS_RS01275	SM00260	Two component signalling adaptor domain
WS_RS01275	SM00448	cheY-homologous receiver domain
WS_RS01360	SM00382	ATPases associated with a variety of cellular activities
WS_RS01365	SM00062	Bacterial periplasmic substrate-binding proteins
WS_RS01365	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
WS_RS01370	SM00062	Bacterial periplasmic substrate-binding proteins
WS_RS01370	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
WS_RS01390	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS01410	SM00342	helix_turn_helix, arabinose operon control protein
WS_RS01440	SM00947	Carbonic anhydrase
WS_RS01460	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
WS_RS01465	SM00849	Metallo-beta-lactamase superfamily
WS_RS01470	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
WS_RS01500	SM00387	Histidine kinase-like ATPases
WS_RS01500	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS01505	SM00448	cheY-homologous receiver domain
WS_RS01505	SM00862	Transcriptional regulatory protein, C terminal
WS_RS01520	SM00883	Chaperonin 10 Kd subunit
WS_RS01605	SM00278	Helix-hairpin-helix DNA-binding motif class 1
WS_RS01615	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
WS_RS01655	SM00830	Chorismate mutase type II
WS_RS01680	SM00382	ATPases associated with a variety of cellular activities
WS_RS01680	SM01086	C-terminal, D2-small domain, of ClpB protein
WS_RS01715	SM00267	diguanylate cyclase
WS_RS01715	SM00448	cheY-homologous receiver domain
WS_RS01720	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
WS_RS01755	SM00487	DEAD-like helicases superfamily
WS_RS01755	SM00490	helicase superfamily c-terminal domain
WS_RS01810	SM00434	DNA Topoisomerase IV
WS_RS01820	SM00382	ATPases associated with a variety of cellular activities
WS_RS01820	SM00448	cheY-homologous receiver domain
WS_RS01825	SM00859	Semialdehyde dehydrogenase, NAD binding domain
WS_RS01855	SM00729	Elongator protein 3, MiaB family, Radical SAM
WS_RS01875	SM00387	Histidine kinase-like ATPases
WS_RS01910	SM00671	Sel1-like repeats.
WS_RS01930	SM00382	ATPases associated with a variety of cellular activities
WS_RS01955	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
WS_RS01970	SM00267	diguanylate cyclase
WS_RS01970	SM01079	WS_RS01970
WS_RS02015	SM00938	Nitrogen regulatory protein P-II
WS_RS02040	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
WS_RS02040	SM00091	PAS domain
WS_RS02040	SM00267	diguanylate cyclase
WS_RS02040	SM00448	cheY-homologous receiver domain
WS_RS02050	SM00998	Adenylosuccinate lyase C-terminus
WS_RS02055	SM00363	S4 RNA-binding domain
WS_RS02095	SM00028	Tetratricopeptide repeats
WS_RS02095	SM00327	von Willebrand factor (vWF) type A domain
WS_RS02100	SM00327	von Willebrand factor (vWF) type A domain
WS_RS02110	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
WS_RS02110	SM00474	3'-5' exonuclease
WS_RS02110	SM00475	5'-3' exonuclease
WS_RS02110	SM00482	DNA polymerase A domain
WS_RS02155	SM00278	Helix-hairpin-helix DNA-binding motif class 1
WS_RS02185	SM00967	RNA 2'-O ribose methyltransferase substrate binding
WS_RS02240	SM00729	Elongator protein 3, MiaB family, Radical SAM
WS_RS02290	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
WS_RS02290	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
WS_RS02295	SM00649	Ribosomal protein L11/L12
WS_RS02315	SM00663	RNA polymerase I subunit A N-terminus
WS_RS02330	SM00838	Elongation factor G C-terminus
WS_RS02330	SM00889	Elongation factor G, domain IV
WS_RS02365	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
WS_RS02370	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
WS_RS02415	SM00028	Tetratricopeptide repeats
WS_RS02430	SM00320	WD40 repeats
WS_RS02450	SM01007	Class II Aldolase and Adducin N-terminal domain
WS_RS02460	SM00411	bacterial (prokaryotic) histone like domain
WS_RS02510	SM00470	ParB-like nuclease domain
WS_RS02540	SM00382	ATPases associated with a variety of cellular activities
WS_RS02590	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
WS_RS02600	SM00855	Phosphoglycerate mutase family
WS_RS02605	SM00382	ATPases associated with a variety of cellular activities
WS_RS02665	SM00382	ATPases associated with a variety of cellular activities
WS_RS02680	SM00382	ATPases associated with a variety of cellular activities
WS_RS02680	SM00962	SRP54-type protein, GTPase domain
WS_RS02680	SM00963	SRP54-type protein, helical bundle domain
WS_RS02730	SM00986	Uracil DNA glycosylase superfamily
WS_RS02730	SM00987	UreE urease accessory protein, C-terminal domain 
WS_RS02745	SM00938	Nitrogen regulatory protein P-II
WS_RS02750	SM00861	Transketolase, pyrimidine binding domain
WS_RS02795	SM00382	ATPases associated with a variety of cellular activities
WS_RS02850	SM00984	UDP binding domain
WS_RS02860	SM00363	S4 RNA-binding domain
WS_RS02865	SM00904	Riboflavin kinase
WS_RS02915	SM00479	WS_RS02915
WS_RS02920	SM00100	Cyclic nucleotide-monophosphate binding domain
WS_RS02945	SM00563	Phosphate acyltransferases
WS_RS02955	SM01211	WS_RS02955
WS_RS02970	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
WS_RS02970	SM00245	tail specific protease
WS_RS02975	SM00382	ATPases associated with a variety of cellular activities
WS_RS02975	SM01086	C-terminal, D2-small domain, of ClpB protein
WS_RS03025	SM00448	cheY-homologous receiver domain
WS_RS03035	SM00382	ATPases associated with a variety of cellular activities
WS_RS03050	SM00917	LeuA allosteric (dimerisation) domain
WS_RS03055	SM00450	Rhodanese Homology Domain
WS_RS03070	SM00825	Beta-ketoacyl synthase
WS_RS03080	SM00822	WS_RS03080
WS_RS03115	SM00382	ATPases associated with a variety of cellular activities
WS_RS03125	SM00387	Histidine kinase-like ATPases
WS_RS03125	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS03130	SM00448	cheY-homologous receiver domain
WS_RS03130	SM00862	Transcriptional regulatory protein, C terminal
WS_RS03150	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS03175	SM00382	ATPases associated with a variety of cellular activities
WS_RS03210	SM00448	cheY-homologous receiver domain
WS_RS03210	SM00862	Transcriptional regulatory protein, C terminal
WS_RS03225	SM00870	WS_RS03225
WS_RS03355	SM00636	WS_RS03355
WS_RS03360	SM00448	cheY-homologous receiver domain
WS_RS03380	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS03385	SM00271	DnaJ molecular chaperone homology domain
WS_RS03400	SM01005	Alanine racemase, C-terminal domain
WS_RS03435	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
WS_RS03530	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
WS_RS03580	SM00478	endonuclease III
WS_RS03610	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
WS_RS03620	SM00226	Low molecular weight phosphatase family
WS_RS03655	SM00226	Low molecular weight phosphatase family
WS_RS03660	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS03660	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
WS_RS03675	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
WS_RS03685	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
WS_RS03710	SM00052	Putative diguanylate phosphodiesterase
WS_RS03765	SM00342	helix_turn_helix, arabinose operon control protein
WS_RS03765	SM00871	Bacterial transcription activator, effector binding domain
WS_RS03785	SM00360	RNA recognition motif
WS_RS03870	SM00052	Putative diguanylate phosphodiesterase
WS_RS03870	SM00267	diguanylate cyclase
WS_RS03880	SM00450	Rhodanese Homology Domain
WS_RS03890	SM00357	Cold shock protein domain
WS_RS03890	SM00382	ATPases associated with a variety of cellular activities
WS_RS03890	SM00959	Rho termination factor, N-terminal domain
WS_RS03915	SM01228	WS_RS03915
WS_RS03920	SM00937	WS_RS03920
WS_RS03945	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
WS_RS04005	SM00852	Probable molybdopterin binding domain
WS_RS04055	SM00244	prohibitin homologues
WS_RS04065	SM00347	helix_turn_helix multiple antibiotic resistance protein
WS_RS04070	SM00052	Putative diguanylate phosphodiesterase
WS_RS04075	SM00387	Histidine kinase-like ATPases
WS_RS04075	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS04075	SM00448	cheY-homologous receiver domain
WS_RS04085	SM00387	Histidine kinase-like ATPases
WS_RS04085	SM00448	cheY-homologous receiver domain
WS_RS04090	SM00448	cheY-homologous receiver domain
WS_RS04090	SM00862	Transcriptional regulatory protein, C terminal
WS_RS04115	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS04125	SM00382	ATPases associated with a variety of cellular activities
WS_RS04130	SM00028	Tetratricopeptide repeats
WS_RS04140	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS04140	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
WS_RS04190	SM00028	Tetratricopeptide repeats
WS_RS04270	SM01209	WS_RS04270
WS_RS04270	SM01210	WS_RS04270
WS_RS04295	SM00316	Ribosomal protein S1-like RNA-binding domain
WS_RS04295	SM00322	K homology RNA-binding domain
WS_RS04315	SM00448	cheY-homologous receiver domain
WS_RS04315	SM00862	Transcriptional regulatory protein, C terminal
WS_RS04320	SM00387	Histidine kinase-like ATPases
WS_RS04320	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS04320	SM00897	FIST N domain
WS_RS04320	SM01204	WS_RS04320
WS_RS04350	SM00382	ATPases associated with a variety of cellular activities
WS_RS04375	SM00320	WD40 repeats
WS_RS04380	SM00100	Cyclic nucleotide-monophosphate binding domain
WS_RS04405	SM00710	Parallel beta-helix repeats
WS_RS04405	SM00722	Domain present in carbohydrate binding proteins and sugar hydrolses
WS_RS04430	SM00382	ATPases associated with a variety of cellular activities
WS_RS04455	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS04480	SM00448	cheY-homologous receiver domain
WS_RS04480	SM00862	Transcriptional regulatory protein, C terminal
WS_RS04500	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
WS_RS04510	SM00052	Putative diguanylate phosphodiesterase
WS_RS04510	SM00091	PAS domain
WS_RS04510	SM00267	diguanylate cyclase
WS_RS04525	SM00052	Putative diguanylate phosphodiesterase
WS_RS04525	SM00267	diguanylate cyclase
WS_RS04535	SM00382	ATPases associated with a variety of cellular activities
WS_RS04555	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS04560	SM00448	cheY-homologous receiver domain
WS_RS04560	SM00862	Transcriptional regulatory protein, C terminal
WS_RS04565	SM00387	Histidine kinase-like ATPases
WS_RS04565	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS04580	SM00899	WS_RS04580
WS_RS04645	SM00052	Putative diguanylate phosphodiesterase
WS_RS04645	SM00267	diguanylate cyclase
WS_RS04675	SM00268	Actin
WS_RS04690	SM00387	Histidine kinase-like ATPases
WS_RS04690	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS04690	SM00448	cheY-homologous receiver domain
WS_RS04695	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
WS_RS04695	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
WS_RS04695	SM00387	Histidine kinase-like ATPases
WS_RS04695	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS04695	SM00448	cheY-homologous receiver domain
WS_RS04705	SM00382	ATPases associated with a variety of cellular activities
WS_RS04710	SM00382	ATPases associated with a variety of cellular activities
WS_RS04750	SM00382	ATPases associated with a variety of cellular activities
WS_RS04755	SM00382	ATPases associated with a variety of cellular activities
WS_RS04765	SM00342	helix_turn_helix, arabinose operon control protein
WS_RS04820	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS04835	SM00232	JAB/MPN domain
WS_RS04910	SM00411	bacterial (prokaryotic) histone like domain
WS_RS04915	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
WS_RS04915	SM00091	PAS domain
WS_RS04915	SM00267	diguanylate cyclase
WS_RS04915	SM00448	cheY-homologous receiver domain
WS_RS04925	SM00052	Putative diguanylate phosphodiesterase
WS_RS04935	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
WS_RS04950	SM00881	CoA binding domain
WS_RS04965	SM00448	cheY-homologous receiver domain
WS_RS04970	SM00387	Histidine kinase-like ATPases
WS_RS05035	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS05065	SM01387	WS_RS05065
WS_RS05090	SM00478	endonuclease III
WS_RS05090	SM00525	WS_RS05090
WS_RS05120	SM00881	CoA binding domain
WS_RS05155	SM00878	Biotin carboxylase C-terminal domain
WS_RS05170	SM00448	cheY-homologous receiver domain
WS_RS05175	SM00260	Two component signalling adaptor domain
WS_RS05185	SM00073	Histidine Phosphotransfer domain
WS_RS05250	SM00382	ATPases associated with a variety of cellular activities
WS_RS05335	SM00342	helix_turn_helix, arabinose operon control protein
WS_RS05350	SM00382	ATPases associated with a variety of cellular activities
WS_RS05365	SM00796	Allophanate hydrolase subunit 1
WS_RS05365	SM00797	Allophanate hydrolase subunit 2
WS_RS05365	SM00878	Biotin carboxylase C-terminal domain
WS_RS05380	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
WS_RS05395	SM00382	ATPases associated with a variety of cellular activities
WS_RS05420	SM00487	DEAD-like helicases superfamily
WS_RS05490	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
WS_RS05535	SM00342	helix_turn_helix, arabinose operon control protein
WS_RS05545	SM00382	ATPases associated with a variety of cellular activities
WS_RS05590	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
WS_RS05610	SM00320	WD40 repeats
WS_RS05635	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
WS_RS05650	SM00100	Cyclic nucleotide-monophosphate binding domain
WS_RS05650	SM00419	helix_turn_helix, cAMP Regulatory protein
WS_RS05710	SM00100	Cyclic nucleotide-monophosphate binding domain
WS_RS05710	SM00419	helix_turn_helix, cAMP Regulatory protein
WS_RS05720	SM00852	Probable molybdopterin binding domain
WS_RS05740	SM00852	Probable molybdopterin binding domain
WS_RS05775	SM00448	cheY-homologous receiver domain
WS_RS05775	SM00862	Transcriptional regulatory protein, C terminal
WS_RS05780	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS05785	SM00271	DnaJ molecular chaperone homology domain
WS_RS05795	SM00138	Methyltransferase, chemotaxis proteins 
WS_RS05815	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS05815	SM01049	WS_RS05815
WS_RS05885	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS05905	SM01018	B12 binding domain
WS_RS05915	SM00986	Uracil DNA glycosylase superfamily
WS_RS05915	SM00987	UreE urease accessory protein, C-terminal domain 
WS_RS05930	SM00487	DEAD-like helicases superfamily
WS_RS05930	SM00490	helicase superfamily c-terminal domain
WS_RS05930	SM00982	WS_RS05930
WS_RS05930	SM01058	CarD-like/TRCF domain
WS_RS05950	SM00267	diguanylate cyclase
WS_RS05980	SM01323	WS_RS05980
WS_RS05995	SM00271	DnaJ molecular chaperone homology domain
WS_RS06000	SM00422	helix_turn_helix, mercury resistance
WS_RS06005	SM00382	ATPases associated with a variety of cellular activities
WS_RS06015	SM00957	SecA DEAD-like domain
WS_RS06015	SM00958	SecA preprotein cross-linking domain
WS_RS06050	SM00382	ATPases associated with a variety of cellular activities
WS_RS06055	SM00382	ATPases associated with a variety of cellular activities
WS_RS06125	SM00841	Elongation factor P, C-terminal
WS_RS06125	SM01185	WS_RS06125
WS_RS06155	SM01245	WS_RS06155
WS_RS06165	SM01234	WS_RS06165
WS_RS06175	SM00878	Biotin carboxylase C-terminal domain
WS_RS06195	SM00382	ATPases associated with a variety of cellular activities
WS_RS06195	SM01086	C-terminal, D2-small domain, of ClpB protein
WS_RS06245	SM00320	WD40 repeats
WS_RS06260	SM00874	tRNA synthetase B5 domain
WS_RS06260	SM00896	Ferredoxin-fold anticodon binding domain
WS_RS06275	SM00316	Ribosomal protein S1-like RNA-binding domain
WS_RS06300	SM00382	ATPases associated with a variety of cellular activities
WS_RS06335	SM00226	Low molecular weight phosphatase family
WS_RS06350	SM00450	Rhodanese Homology Domain
WS_RS06375	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS06390	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS06400	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS06400	SM00448	cheY-homologous receiver domain
WS_RS06545	SM00382	ATPases associated with a variety of cellular activities
WS_RS06560	SM00387	Histidine kinase-like ATPases
WS_RS06560	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS06560	SM00448	cheY-homologous receiver domain
WS_RS06565	SM00448	cheY-homologous receiver domain
WS_RS06690	SM00382	ATPases associated with a variety of cellular activities
WS_RS06690	SM00994	ClpX C4-type zinc finger
WS_RS06690	SM01086	C-terminal, D2-small domain, of ClpB protein
WS_RS06695	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
WS_RS06695	SM00382	ATPases associated with a variety of cellular activities
WS_RS06705	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS06705	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
WS_RS06735	SM00899	WS_RS06735
WS_RS06755	SM00382	ATPases associated with a variety of cellular activities
WS_RS06765	SM00965	Secretin and TonB N terminus short domain
WS_RS06805	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
WS_RS06825	SM00448	cheY-homologous receiver domain
WS_RS06825	SM00862	Transcriptional regulatory protein, C terminal
WS_RS06835	SM00387	Histidine kinase-like ATPases
WS_RS06940	SM01329	WS_RS06940
WS_RS06980	SM00448	cheY-homologous receiver domain
WS_RS06980	SM00862	Transcriptional regulatory protein, C terminal
WS_RS06985	SM00387	Histidine kinase-like ATPases
WS_RS06985	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS06995	SM00382	ATPases associated with a variety of cellular activities
WS_RS07000	SM00382	ATPases associated with a variety of cellular activities
WS_RS07055	SM00487	DEAD-like helicases superfamily
WS_RS07055	SM00490	helicase superfamily c-terminal domain
WS_RS07075	SM00463	Small MutS-related domain
WS_RS07075	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
WS_RS07075	SM00534	ATPase domain of DNA mismatch repair MUTS family
WS_RS07100	SM00382	ATPases associated with a variety of cellular activities
WS_RS07105	SM01192	WS_RS07105
WS_RS07105	SM01193	WS_RS07105
WS_RS07125	SM00271	DnaJ molecular chaperone homology domain
WS_RS07135	SM00729	Elongator protein 3, MiaB family, Radical SAM
WS_RS07135	SM00876	Biotin and Thiamin Synthesis associated domain
WS_RS07140	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
WS_RS07140	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
WS_RS07140	SM00493	WS_RS07140
WS_RS07150	SM00028	Tetratricopeptide repeats
WS_RS07155	SM00478	endonuclease III
WS_RS07170	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS07170	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
WS_RS07180	SM00382	ATPases associated with a variety of cellular activities
WS_RS07185	SM00729	Elongator protein 3, MiaB family, Radical SAM
WS_RS07210	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS07220	SM00387	Histidine kinase-like ATPases
WS_RS07225	SM00448	cheY-homologous receiver domain
WS_RS07225	SM00862	Transcriptional regulatory protein, C terminal
WS_RS07230	SM00054	EF-hand, calcium binding motif
WS_RS07255	SM00345	helix_turn_helix gluconate operon transcriptional repressor
WS_RS07255	SM00895	WS_RS07255
WS_RS07335	SM00382	ATPases associated with a variety of cellular activities
WS_RS07360	SM00052	Putative diguanylate phosphodiesterase
WS_RS07360	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
WS_RS07360	SM00091	PAS domain
WS_RS07360	SM00267	diguanylate cyclase
WS_RS07375	SM00382	ATPases associated with a variety of cellular activities
WS_RS07510	SM00387	Histidine kinase-like ATPases
WS_RS07510	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS07580	SM00465	GIY-YIG type nucleases (URI domain)
WS_RS07600	SM00342	helix_turn_helix, arabinose operon control protein
WS_RS07655	SM00271	DnaJ molecular chaperone homology domain
WS_RS07670	SM00450	Rhodanese Homology Domain
WS_RS07675	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
WS_RS07675	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
WS_RS07685	SM00028	Tetratricopeptide repeats
WS_RS07690	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
WS_RS07690	SM01080	WS_RS07690
WS_RS07700	SM01400	WS_RS07700
WS_RS07735	SM00382	ATPases associated with a variety of cellular activities
WS_RS07735	SM00962	SRP54-type protein, GTPase domain
WS_RS07800	SM00838	Elongation factor G C-terminus
WS_RS07820	SM00382	ATPases associated with a variety of cellular activities
WS_RS07870	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS07875	SM00091	PAS domain
WS_RS07965	SM00662	RNA polymerases D
WS_RS07970	SM00363	S4 RNA-binding domain
WS_RS07970	SM01390	WS_RS07970
WS_RS07985	SM00316	Ribosomal protein S1-like RNA-binding domain
WS_RS08030	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
WS_RS08035	SM01374	WS_RS08035
WS_RS08055	SM00322	K homology RNA-binding domain
WS_RS08070	SM01382	WS_RS08070
WS_RS08070	SM01383	WS_RS08070
WS_RS08090	SM01403	WS_RS08090
WS_RS08115	SM00729	Elongator protein 3, MiaB family, Radical SAM
WS_RS08135	SM00448	cheY-homologous receiver domain
WS_RS08135	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
WS_RS08140	SM00062	Bacterial periplasmic substrate-binding proteins
WS_RS08140	SM00387	Histidine kinase-like ATPases
WS_RS08140	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS08140	SM00448	cheY-homologous receiver domain
WS_RS08240	SM00729	Elongator protein 3, MiaB family, Radical SAM
WS_RS08255	SM00518	AP endonuclease family 2
WS_RS08280	SM00495	Chitin-binding domain type 3
WS_RS08295	SM00838	Elongation factor G C-terminus
WS_RS08305	SM00670	Large family of predicted nucleotide-binding domains
WS_RS08325	SM00729	Elongator protein 3, MiaB family, Radical SAM
WS_RS08360	SM00729	Elongator protein 3, MiaB family, Radical SAM
WS_RS08370	SM00316	Ribosomal protein S1-like RNA-binding domain
WS_RS08395	SM00852	Probable molybdopterin binding domain
WS_RS08415	SM00260	Two component signalling adaptor domain
WS_RS08415	SM00448	cheY-homologous receiver domain
WS_RS08420	SM00278	Helix-hairpin-helix DNA-binding motif class 1
WS_RS08420	SM00292	breast cancer carboxy-terminal domain
WS_RS08420	SM00532	Ligase N family
WS_RS08440	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS08450	SM00448	cheY-homologous receiver domain
WS_RS08450	SM00862	Transcriptional regulatory protein, C terminal
WS_RS08470	SM00382	ATPases associated with a variety of cellular activities
WS_RS08520	SM01329	WS_RS08520
WS_RS08540	SM00448	cheY-homologous receiver domain
WS_RS08540	SM00862	Transcriptional regulatory protein, C terminal
WS_RS08545	SM00387	Histidine kinase-like ATPases
WS_RS08560	SM01004	Delta-aminolevulinic acid dehydratase
WS_RS08565	SM00749	bacterial OsmY and nodulation domain
WS_RS08580	SM00382	ATPases associated with a variety of cellular activities
WS_RS08670	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
WS_RS08675	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS08775	SM00260	Two component signalling adaptor domain
WS_RS08775	SM00448	cheY-homologous receiver domain
WS_RS08805	SM00357	Cold shock protein domain
WS_RS08805	SM00955	WS_RS08805
WS_RS08840	SM00320	WD40 repeats
WS_RS08850	SM00732	Likely ribonuclease with RNase H fold.
WS_RS08855	SM00798	AICARFT/IMPCHase bienzyme
WS_RS08855	SM00851	MGS-like domain
WS_RS08905	SM00116	Domain in cystathionine beta-synthase and other proteins.
WS_RS08905	SM01240	WS_RS08905
WS_RS08920	SM00358	Double-stranded RNA binding motif
WS_RS08920	SM00535	Ribonuclease III family
WS_RS08930	SM00028	Tetratricopeptide repeats
WS_RS08935	SM00400	zinc finger
WS_RS08935	SM00493	WS_RS08935
WS_RS09005	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS09005	SM01049	WS_RS09005
WS_RS09040	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS09045	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
WS_RS09055	SM00857	Resolvase, N terminal domain
WS_RS09060	SM00387	Histidine kinase-like ATPases
WS_RS09090	SM00869	Autotransporter beta-domain
WS_RS09115	SM00448	cheY-homologous receiver domain
WS_RS09135	SM00382	ATPases associated with a variety of cellular activities
WS_RS09135	SM00930	WS_RS09135
WS_RS09170	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS09185	SM00448	cheY-homologous receiver domain
WS_RS09185	SM00862	Transcriptional regulatory protein, C terminal
WS_RS09190	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
WS_RS09205	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS09215	SM00487	DEAD-like helicases superfamily
WS_RS09215	SM00490	helicase superfamily c-terminal domain
WS_RS09230	SM00487	DEAD-like helicases superfamily
WS_RS09230	SM00490	helicase superfamily c-terminal domain
WS_RS09270	SM00382	ATPases associated with a variety of cellular activities
WS_RS09270	SM00464	Found in ATP-dependent protease La (LON)
WS_RS09295	SM00563	Phosphate acyltransferases
WS_RS09305	SM00363	S4 RNA-binding domain
WS_RS09310	SM00382	ATPases associated with a variety of cellular activities
WS_RS09315	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
WS_RS09315	SM00091	PAS domain
WS_RS09315	SM00387	Histidine kinase-like ATPases
WS_RS09315	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS09315	SM00448	cheY-homologous receiver domain
WS_RS09325	SM00481	DNA polymerase alpha chain like domain
WS_RS09365	SM00562	WS_RS09365
WS_RS09385	SM00861	Transketolase, pyrimidine binding domain
WS_RS09420	SM00450	Rhodanese Homology Domain
WS_RS09430	SM00845	GatB domain
WS_RS09435	SM00729	Elongator protein 3, MiaB family, Radical SAM
WS_RS09515	SM00382	ATPases associated with a variety of cellular activities
WS_RS09640	SM00387	Histidine kinase-like ATPases
WS_RS09645	SM00448	cheY-homologous receiver domain
WS_RS09645	SM00862	Transcriptional regulatory protein, C terminal
WS_RS09660	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
WS_RS09670	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
WS_RS09695	SM00788	Adenylosuccinate synthetase
WS_RS09770	SM00257	Lysin motif
WS_RS09820	SM00260	Two component signalling adaptor domain
WS_RS09825	SM00073	Histidine Phosphotransfer domain
WS_RS09825	SM00260	Two component signalling adaptor domain
WS_RS09825	SM00387	Histidine kinase-like ATPases
WS_RS09825	SM00448	cheY-homologous receiver domain
WS_RS09825	SM01231	WS_RS09825
WS_RS09830	SM00260	Two component signalling adaptor domain
WS_RS09830	SM00448	cheY-homologous receiver domain
WS_RS09840	SM00859	Semialdehyde dehydrogenase, NAD binding domain
WS_RS09885	SM00382	ATPases associated with a variety of cellular activities
WS_RS09900	SM00382	ATPases associated with a variety of cellular activities
WS_RS09950	SM00858	WS_RS09950
WS_RS09970	SM00331	Sigma factor PP2C-like phosphatases
WS_RS09970	SM00448	cheY-homologous receiver domain
WS_RS09975	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS09975	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
WS_RS10010	SM01001	AIR carboxylase
WS_RS10025	SM01230	WS_RS10025
WS_RS10040	SM00387	Histidine kinase-like ATPases
WS_RS10040	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS10120	SM00851	MGS-like domain
WS_RS10120	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
WS_RS10140	SM00047	Lysozyme subfamily 2
WS_RS10185	SM00363	S4 RNA-binding domain
WS_RS10225	SM00746	metallochaperone-like domain
WS_RS10240	SM00052	Putative diguanylate phosphodiesterase
WS_RS10335	SM00729	Elongator protein 3, MiaB family, Radical SAM
WS_RS10365	SM00387	Histidine kinase-like ATPases
WS_RS10370	SM00448	cheY-homologous receiver domain
WS_RS10370	SM00862	Transcriptional regulatory protein, C terminal
WS_RS10400	SM00382	ATPases associated with a variety of cellular activities
WS_RS10415	SM00267	diguanylate cyclase
WS_RS10430	SM00382	ATPases associated with a variety of cellular activities
WS_RS10435	SM00867	YceI-like domain 
WS_RS10460	SM01130	WS_RS10460
WS_RS10475	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
WS_RS10485	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
WS_RS10515	SM00260	Two component signalling adaptor domain
WS_RS10520	SM00052	Putative diguanylate phosphodiesterase
WS_RS10520	SM00091	PAS domain
WS_RS10520	SM00267	diguanylate cyclase
WS_RS10520	SM00448	cheY-homologous receiver domain
WS_RS10530	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
WS_RS10530	SM00091	PAS domain
WS_RS10530	SM00387	Histidine kinase-like ATPases
WS_RS10530	SM00448	cheY-homologous receiver domain
WS_RS10535	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS10535	SM01204	WS_RS10535
WS_RS10555	SM00091	PAS domain
WS_RS10555	SM00387	Histidine kinase-like ATPases
WS_RS10570	SM00052	Putative diguanylate phosphodiesterase
WS_RS10570	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
WS_RS10570	SM00267	diguanylate cyclase
WS_RS10575	SM00267	diguanylate cyclase
WS_RS10580	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS10585	SM00062	Bacterial periplasmic substrate-binding proteins
WS_RS10585	SM00387	Histidine kinase-like ATPases
WS_RS10585	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS10585	SM00448	cheY-homologous receiver domain
WS_RS10600	SM00387	Histidine kinase-like ATPases
WS_RS10605	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
WS_RS10615	SM00116	Domain in cystathionine beta-synthase and other proteins.
WS_RS10615	SM00267	diguanylate cyclase
WS_RS10635	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
WS_RS10635	SM00091	PAS domain
WS_RS10635	SM00267	diguanylate cyclase
WS_RS10640	SM00387	Histidine kinase-like ATPases
WS_RS10640	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS10650	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
WS_RS10650	SM00091	PAS domain
WS_RS10650	SM00448	cheY-homologous receiver domain
WS_RS10655	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
WS_RS10655	SM00091	PAS domain
WS_RS10655	SM00387	Histidine kinase-like ATPases
WS_RS10660	SM00387	Histidine kinase-like ATPases
WS_RS10695	SM00267	diguanylate cyclase
WS_RS10695	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
WS_RS10705	SM00342	helix_turn_helix, arabinose operon control protein
WS_RS10725	SM00267	diguanylate cyclase
WS_RS10745	SM00091	PAS domain
WS_RS10745	SM00387	Histidine kinase-like ATPases
WS_RS10745	SM00388	His Kinase A (phosphoacceptor) domain
WS_RS10770	SM00448	cheY-homologous receiver domain
WS_RS10775	SM00052	Putative diguanylate phosphodiesterase
WS_RS10775	SM00267	diguanylate cyclase
WS_RS10780	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
