locus-tag class description WS_RS00005 PF00308 Bacterial dnaA protein WS_RS00005 PF11638 DnaA N-terminal domain WS_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix WS_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain WS_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain WS_RS00010 PF02767 DNA polymerase III beta subunit, central domain WS_RS00015 PF00204 DNA gyrase B WS_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS00015 PF01751 Toprim domain WS_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus WS_RS00020 PF14489 QueF-like protein WS_RS00025 PF02660 Glycerol-3-phosphate acyltransferase WS_RS00035 PF02028 BCCT, betaine/carnitine/choline family transporter WS_RS00040 PF00582 Universal stress protein family WS_RS00050 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WS_RS00060 PF00072 Response regulator receiver domain WS_RS00060 PF00486 Transcriptional regulatory protein, C terminal WS_RS00065 PF00512 His Kinase A (phospho-acceptor) domain WS_RS00065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS00070 PF07556 Protein of unknown function (DUF1538) WS_RS00075 PF00571 CBS domain WS_RS00085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS00085 PF08447 PAS fold WS_RS00085 PF08448 PAS fold WS_RS00090 PF10672 S-adenosylmethionine-dependent methyltransferase WS_RS00090 PF17785 PUA-like domain WS_RS00105 PF01842 ACT domain WS_RS00105 PF08335 GlnD PII-uridylyltransferase WS_RS00105 PF01909 Nucleotidyltransferase domain WS_RS00105 PF01966 HD domain WS_RS00110 PF01380 SIS domain WS_RS00115 PF00990 Diguanylate cyclase, GGDEF domain WS_RS00115 PF00072 Response regulator receiver domain WS_RS00120 PF00266 Aminotransferase class-V WS_RS00125 PF01370 NAD dependent epimerase/dehydratase family WS_RS00135 PF02634 FdhD/NarQ family WS_RS00145 PF13247 4Fe-4S dicluster domain WS_RS00150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS_RS00150 PF00384 Molybdopterin oxidoreductase WS_RS00150 PF01568 Molydopterin dinucleotide binding domain WS_RS00170 PF00583 Acetyltransferase (GNAT) family WS_RS00180 PF02719 Polysaccharide biosynthesis protein WS_RS00185 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WS_RS00195 PF02397 Bacterial sugar transferase WS_RS00200 PF00534 Glycosyl transferases group 1 WS_RS00200 PF13477 Glycosyl transferase 4-like WS_RS00205 PF00733 Asparagine synthase WS_RS00205 PF13537 Glutamine amidotransferase domain WS_RS00210 PF02516 Oligosaccharyl transferase STT3 subunit WS_RS00210 PF18527 STT3/PglB C-terminal beta-barrel domain WS_RS00215 PF13439 Glycosyltransferase Family 4 WS_RS00215 PF00534 Glycosyl transferases group 1 WS_RS00220 PF13537 Glutamine amidotransferase domain WS_RS00220 PF00733 Asparagine synthase WS_RS00240 PF13439 Glycosyltransferase Family 4 WS_RS00240 PF00534 Glycosyl transferases group 1 WS_RS00250 PF00005 ABC transporter WS_RS00250 PF00664 ABC transporter transmembrane region WS_RS00255 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WS_RS00255 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WS_RS00255 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WS_RS00260 PF00486 Transcriptional regulatory protein, C terminal WS_RS00260 PF00072 Response regulator receiver domain WS_RS00275 PF10431 C-terminal, D2-small domain, of ClpB protein WS_RS00275 PF06689 ClpX C4-type zinc finger WS_RS00275 PF07724 AAA domain (Cdc48 subfamily) WS_RS00280 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 WS_RS00280 PF00132 Bacterial transferase hexapeptide (six repeats) WS_RS00285 PF07977 FabA-like domain WS_RS00290 PF02677 Epoxyqueuosine reductase QueH WS_RS00295 PF04055 Radical SAM superfamily WS_RS00305 PF00977 Histidine biosynthesis protein WS_RS00310 PF00398 Ribosomal RNA adenine dimethylase WS_RS00315 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain WS_RS00315 PF00753 Metallo-beta-lactamase superfamily WS_RS00315 PF17770 Ribonuclease J C-terminal domain WS_RS00320 PF00571 CBS domain WS_RS00320 PF01380 SIS domain WS_RS00325 PF10398 Protein of unknown function (DUF2443) WS_RS00335 PF00583 Acetyltransferase (GNAT) family WS_RS00340 PF01966 HD domain WS_RS00340 PF00013 KH domain WS_RS00340 PF12072 Domain of unknown function (DUF3552) WS_RS00350 PF00578 AhpC/TSA family WS_RS00355 PF00448 SRP54-type protein, GTPase domain WS_RS00360 PF18073 Rubredoxin metal binding domain WS_RS00370 PF00486 Transcriptional regulatory protein, C terminal WS_RS00370 PF00072 Response regulator receiver domain WS_RS00375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS00390 PF04461 Protein of unknown function (DUF520) WS_RS00400 PF01336 OB-fold nucleic acid binding domain WS_RS00400 PF00152 tRNA synthetases class II (D, K and N) WS_RS00405 PF00464 Serine hydroxymethyltransferase WS_RS00420 PF04715 Anthranilate synthase component I, N terminal region WS_RS00420 PF00425 chorismate binding enzyme WS_RS00430 PF01502 Phosphoribosyl-AMP cyclohydrolase WS_RS00430 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase WS_RS00440 PF01063 Amino-transferase class IV WS_RS00445 PF01370 NAD dependent epimerase/dehydratase family WS_RS00445 PF08338 Domain of unknown function (DUF1731) WS_RS00450 PF00672 HAMP domain WS_RS00450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS00450 PF02203 Tar ligand binding domain homologue WS_RS00460 PF01580 FtsK/SpoIIIE family WS_RS00460 PF17854 FtsK alpha domain WS_RS00460 PF09397 Ftsk gamma domain WS_RS00480 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD WS_RS00480 PF00132 Bacterial transferase hexapeptide (six repeats) WS_RS00485 PF10369 Small subunit of acetolactate synthase WS_RS00490 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WS_RS00490 PF00205 Thiamine pyrophosphate enzyme, central domain WS_RS00490 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS_RS00495 PF02541 Ppx/GppA phosphatase family WS_RS00500 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ WS_RS00505 PF04166 Pyridoxal phosphate biosynthetic protein PdxA WS_RS00520 PF00005 ABC transporter WS_RS00525 PF00472 RF-1 domain WS_RS00525 PF03462 PCRF domain WS_RS00530 PF02569 Pantoate-beta-alanine ligase WS_RS00535 PF04055 Radical SAM superfamily WS_RS00535 PF06969 HemN C-terminal domain WS_RS00540 PF12852 Cupin WS_RS00540 PF12833 Helix-turn-helix domain WS_RS00545 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS_RS00545 PF00384 Molybdopterin oxidoreductase WS_RS00545 PF01568 Molydopterin dinucleotide binding domain WS_RS00545 PF10518 TAT (twin-arginine translocation) pathway signal sequence WS_RS00550 PF13247 4Fe-4S dicluster domain WS_RS00555 PF03916 Polysulphide reductase, NrfD WS_RS00560 PF00072 Response regulator receiver domain WS_RS00560 PF00486 Transcriptional regulatory protein, C terminal WS_RS00565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS00565 PF00512 His Kinase A (phospho-acceptor) domain WS_RS00565 PF13188 PAS domain WS_RS00565 PF13426 PAS domain WS_RS00565 PF00989 PAS fold WS_RS00570 PF03264 NapC/NirT cytochrome c family, N-terminal region WS_RS00580 PF00890 FAD binding domain WS_RS00580 PF14537 Cytochrome c3 WS_RS00585 PF00563 EAL domain WS_RS00585 PF00990 Diguanylate cyclase, GGDEF domain WS_RS00585 PF08448 PAS fold WS_RS00590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS_RS00590 PF00384 Molybdopterin oxidoreductase WS_RS00590 PF01568 Molydopterin dinucleotide binding domain WS_RS00600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS00600 PF02743 Cache domain WS_RS00600 PF00672 HAMP domain WS_RS00625 PF03553 Na+/H+ antiporter family WS_RS00625 PF13726 Na+-H+ antiporter family WS_RS00630 PF00920 Dehydratase family WS_RS00635 PF13380 CoA binding domain WS_RS00640 PF00291 Pyridoxal-phosphate dependent enzyme WS_RS00640 PF13291 ACT domain WS_RS00685 PF00731 AIR carboxylase WS_RS00690 PF02540 NAD synthase WS_RS00695 PF01969 Protein of unknown function DUF111 WS_RS00700 PF09861 Lactate racemase N-terminal domain WS_RS00705 PF01758 Sodium Bile acid symporter family WS_RS00715 PF01479 S4 domain WS_RS00715 PF00849 RNA pseudouridylate synthase WS_RS00725 PF02390 Putative methyltransferase WS_RS00730 PF00005 ABC transporter WS_RS00750 PF02465 Flagellar hook-associated protein 2 N-terminus WS_RS00750 PF07195 Flagellar hook-associated protein 2 C-terminus WS_RS00755 PF02561 Flagellar protein FliS WS_RS00780 PF02590 Predicted SPOUT methyltransferase WS_RS00785 PF17848 Acetyl-coA carboxylase zinc finger domain WS_RS00785 PF01039 Carboxyl transferase domain WS_RS00800 PF00639 PPIC-type PPIASE domain WS_RS00800 PF09312 SurA N-terminal domain WS_RS00805 PF00132 Bacterial transferase hexapeptide (six repeats) WS_RS00805 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal WS_RS00805 PF14602 Hexapeptide repeat of succinyl-transferase WS_RS00810 PF01207 Dihydrouridine synthase (Dus) WS_RS00815 PF00258 Flavodoxin WS_RS00815 PF00753 Metallo-beta-lactamase superfamily WS_RS00820 PF06865 Pyrimidine/purine nucleoside phosphorylase WS_RS00825 PF06942 GlpM protein WS_RS00830 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain WS_RS00835 PF16653 Saccharopine dehydrogenase C-terminal domain WS_RS00835 PF03435 Saccharopine dehydrogenase NADP binding domain WS_RS00840 PF00873 AcrB/AcrD/AcrF family WS_RS00850 PF01795 MraW methylase family WS_RS00855 PF01515 Phosphate acetyl/butaryl transferase WS_RS00855 PF03949 Malic enzyme, NAD binding domain WS_RS00855 PF00390 Malic enzyme, N-terminal domain WS_RS00895 PF02464 Competence-damaged protein WS_RS00900 PF03976 Polyphosphate kinase 2 (PPK2) WS_RS00905 PF08264 Anticodon-binding domain of tRNA WS_RS00905 PF00133 tRNA synthetases class I (I, L, M and V) WS_RS00910 PF00115 Cytochrome C and Quinol oxidase polypeptide I WS_RS00925 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP WS_RS00925 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WS_RS00945 PF00750 tRNA synthetases class I (R) WS_RS00945 PF05746 DALR anticodon binding domain WS_RS00945 PF03485 Arginyl tRNA synthetase N terminal domain WS_RS00950 PF02416 mttA/Hcf106 family WS_RS00955 PF00625 Guanylate kinase WS_RS00970 PF01311 Bacterial export proteins, family 1 WS_RS00975 PF00005 ABC transporter WS_RS00980 PF00889 Elongation factor TS WS_RS00985 PF00318 Ribosomal protein S2 WS_RS00990 PF00578 AhpC/TSA family WS_RS00995 PF09335 SNARE associated Golgi protein WS_RS01005 PF09335 SNARE associated Golgi protein WS_RS01015 PF00860 Permease family WS_RS01020 PF02606 Tetraacyldisaccharide-1-P 4'-kinase WS_RS01025 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WS_RS01030 PF02540 NAD synthase WS_RS01035 PF00691 OmpA family WS_RS01035 PF05736 OprF membrane domain WS_RS01045 PF02092 Glycyl-tRNA synthetase beta subunit WS_RS01055 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) WS_RS01055 PF00072 Response regulator receiver domain WS_RS01055 PF01627 Hpt domain WS_RS01055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS01055 PF00672 HAMP domain WS_RS01055 PF00512 His Kinase A (phospho-acceptor) domain WS_RS01060 PF00072 Response regulator receiver domain WS_RS01065 PF01339 CheB methylesterase WS_RS01065 PF00072 Response regulator receiver domain WS_RS01080 PF01588 Putative tRNA binding domain WS_RS01080 PF00133 tRNA synthetases class I (I, L, M and V) WS_RS01080 PF09334 tRNA synthetases class I (M) WS_RS01090 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain WS_RS01095 PF00834 Ribulose-phosphate 3 epimerase family WS_RS01100 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase WS_RS01105 PF11490 DNA polymerase III polC-type N-terminus II WS_RS01105 PF02811 PHP domain WS_RS01105 PF00929 Exonuclease WS_RS01105 PF07733 Bacterial DNA polymerase III alpha NTPase domain WS_RS01105 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WS_RS01105 PF14579 Helix-hairpin-helix motif WS_RS01105 PF14480 DNA polymerase III polC-type N-terminus I WS_RS01110 PF17827 PrmC N-terminal domain WS_RS01110 PF05175 Methyltransferase small domain WS_RS01115 PF01435 Peptidase family M48 WS_RS01115 PF16491 CAAX prenyl protease N-terminal, five membrane helices WS_RS01120 PF06418 CTP synthase N-terminus WS_RS01120 PF00117 Glutamine amidotransferase class-I WS_RS01125 PF01368 DHH family WS_RS01125 PF02272 DHHA1 domain WS_RS01125 PF17768 RecJ OB domain WS_RS01130 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS_RS01150 PF12327 FtsZ family, C-terminal domain WS_RS01150 PF00091 Tubulin/FtsZ family, GTPase domain WS_RS01155 PF02491 SHS2 domain inserted in FTSA WS_RS01160 PF13145 PPIC-type PPIASE domain WS_RS01165 PF00202 Aminotransferase class-III WS_RS01175 PF00501 AMP-binding enzyme WS_RS01175 PF13193 AMP-binding enzyme C-terminal domain WS_RS01180 PF00696 Amino acid kinase family WS_RS01185 PF01192 RNA polymerase Rpb6 WS_RS01190 PF02824 TGS domain WS_RS01190 PF04607 Region found in RelA / SpoT proteins WS_RS01190 PF13291 ACT domain WS_RS01195 PF00579 tRNA synthetases class I (W and Y) WS_RS01195 PF01479 S4 domain WS_RS01205 PF04122 Putative cell wall binding repeat 2 WS_RS01205 PF01520 N-acetylmuramoyl-L-alanine amidase WS_RS01215 PF02621 Menaquinone biosynthesis WS_RS01225 PF16326 ABC transporter C-terminal domain WS_RS01225 PF12848 ABC transporter WS_RS01225 PF00005 ABC transporter WS_RS01250 PF00534 Glycosyl transferases group 1 WS_RS01260 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WS_RS01265 PF00534 Glycosyl transferases group 1 WS_RS01265 PF13439 Glycosyltransferase Family 4 WS_RS01270 PF00005 ABC transporter WS_RS01270 PF00664 ABC transporter transmembrane region WS_RS01275 PF00072 Response regulator receiver domain WS_RS01275 PF01584 CheW-like domain WS_RS01285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS_RS01285 PF00460 Flagella basal body rod protein WS_RS01305 PF01464 Transglycosylase SLT domain WS_RS01305 PF10145 Phage-related minor tail protein WS_RS01305 PF01551 Peptidase family M23 WS_RS01315 PF15437 Plasminogen-binding protein pgbA C-terminal WS_RS01315 PF15436 Plasminogen-binding protein pgbA N-terminal WS_RS01320 PF01565 FAD binding domain WS_RS01320 PF02913 FAD linked oxidases, C-terminal domain WS_RS01330 PF01717 Cobalamin-independent synthase, Catalytic domain WS_RS01330 PF08267 Cobalamin-independent synthase, N-terminal domain WS_RS01335 PF03824 High-affinity nickel-transport protein WS_RS01350 PF00749 tRNA synthetases class I (E and Q), catalytic domain WS_RS01360 PF00005 ABC transporter WS_RS01365 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS_RS01370 PF00497 Bacterial extracellular solute-binding proteins, family 3 WS_RS01375 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS01390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS01390 PF00672 HAMP domain WS_RS01390 PF17202 Single cache domain 3 WS_RS01405 PF04454 Encapsulating protein for peroxidase WS_RS01415 PF00593 TonB dependent receptor WS_RS01415 PF07715 TonB-dependent Receptor Plug Domain WS_RS01430 PF09335 SNARE associated Golgi protein WS_RS01435 PF13677 Membrane MotB of proton-channel complex MotA/MotB WS_RS01435 PF00691 OmpA family WS_RS01440 PF00484 Carbonic anhydrase WS_RS01445 PF00793 DAHP synthetase I family WS_RS01450 PF00885 6,7-dimethyl-8-ribityllumazine synthase WS_RS01455 PF01029 NusB family WS_RS01460 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WS_RS01470 PF13286 Phosphohydrolase-associated domain WS_RS01470 PF01966 HD domain WS_RS01485 PF00202 Aminotransferase class-III WS_RS01500 PF00512 His Kinase A (phospho-acceptor) domain WS_RS01500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS01505 PF00072 Response regulator receiver domain WS_RS01505 PF00486 Transcriptional regulatory protein, C terminal WS_RS01510 PF10502 Signal peptidase, peptidase S26 WS_RS01515 PF00118 TCP-1/cpn60 chaperonin family WS_RS01520 PF00166 Chaperonin 10 Kd subunit WS_RS01525 PF00155 Aminotransferase class I and II WS_RS01530 PF00579 tRNA synthetases class I (W and Y) WS_RS01535 PF13649 Methyltransferase domain WS_RS01540 PF03840 Preprotein translocase SecG subunit WS_RS01545 PF01765 Ribosome recycling factor WS_RS01550 PF00156 Phosphoribosyl transferase domain WS_RS01565 PF00119 ATP synthase A chain WS_RS01610 PF03033 Glycosyltransferase family 28 N-terminal domain WS_RS01610 PF04101 Glycosyltransferase family 28 C-terminal domain WS_RS01615 PF02272 DHHA1 domain WS_RS01615 PF01411 tRNA synthetases class II (A) WS_RS01615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WS_RS01620 PF02545 Maf-like protein WS_RS01630 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS_RS01635 PF00830 Ribosomal L28 family WS_RS01645 PF01960 ArgJ family WS_RS01655 PF01817 Chorismate mutase type II WS_RS01655 PF00800 Prephenate dehydratase WS_RS01655 PF01842 ACT domain WS_RS01660 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain WS_RS01660 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain WS_RS01675 PF02617 ATP-dependent Clp protease adaptor protein ClpS WS_RS01680 PF10431 C-terminal, D2-small domain, of ClpB protein WS_RS01680 PF02861 Clp amino terminal domain, pathogenicity island component WS_RS01680 PF17871 AAA lid domain WS_RS01680 PF07724 AAA domain (Cdc48 subfamily) WS_RS01680 PF00004 ATPase family associated with various cellular activities (AAA) WS_RS01685 PF03588 Leucyl/phenylalanyl-tRNA protein transferase WS_RS01695 PF00483 Nucleotidyl transferase WS_RS01705 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WS_RS01710 PF00899 ThiF family WS_RS01715 PF00990 Diguanylate cyclase, GGDEF domain WS_RS01720 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WS_RS01720 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WS_RS01725 PF01027 Inhibitor of apoptosis-promoting Bax1 WS_RS01730 PF17792 ThiD2 family WS_RS01730 PF02581 Thiamine monophosphate synthase WS_RS01735 PF02153 Prephenate dehydrogenase WS_RS01735 PF01842 ACT domain WS_RS01740 PF01103 Surface antigen WS_RS01740 PF07244 Surface antigen variable number repeat WS_RS01745 PF04055 Radical SAM superfamily WS_RS01750 PF05193 Peptidase M16 inactive domain WS_RS01755 PF04851 Type III restriction enzyme, res subunit WS_RS01755 PF00271 Helicase conserved C-terminal domain WS_RS01760 PF00772 DnaB-like helicase N terminal domain WS_RS01760 PF03796 DnaB-like helicase C terminal domain WS_RS01790 PF02592 Putative vitamin uptake transporter WS_RS01800 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WS_RS01810 PF03989 DNA gyrase C-terminal domain, beta-propeller WS_RS01810 PF00521 DNA gyrase/topoisomerase IV, subunit A WS_RS01820 PF00072 Response regulator receiver domain WS_RS01820 PF00158 Sigma-54 interaction domain WS_RS01825 PF02774 Semialdehyde dehydrogenase, dimerisation domain WS_RS01825 PF01118 Semialdehyde dehydrogenase, NAD binding domain WS_RS01835 PF01208 Uroporphyrinogen decarboxylase (URO-D) WS_RS01845 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component WS_RS01850 PF03480 Bacterial extracellular solute-binding protein, family 7 WS_RS01855 PF04055 Radical SAM superfamily WS_RS01875 PF00512 His Kinase A (phospho-acceptor) domain WS_RS01875 PF00989 PAS fold WS_RS01875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS01885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WS_RS01885 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase WS_RS01890 PF13247 4Fe-4S dicluster domain WS_RS01890 PF00037 4Fe-4S binding domain WS_RS01895 PF03916 Polysulphide reductase, NrfD WS_RS01900 PF01578 Cytochrome C assembly protein WS_RS01900 PF05140 ResB-like family WS_RS01905 PF03653 Uncharacterised protein family (UPF0093) WS_RS01930 PF00005 ABC transporter WS_RS01950 PF03475 3-alpha domain WS_RS01950 PF03473 MOSC domain WS_RS01970 PF00563 EAL domain WS_RS01970 PF00990 Diguanylate cyclase, GGDEF domain WS_RS01970 PF03707 Bacterial signalling protein N terminal repeat WS_RS01975 PF01243 Pyridoxamine 5'-phosphate oxidase WS_RS01980 PF00375 Sodium:dicarboxylate symporter family WS_RS01985 PF00155 Aminotransferase class I and II WS_RS01990 PF07690 Major Facilitator Superfamily WS_RS02005 PF03109 ABC1 family WS_RS02015 PF00543 Nitrogen regulatory protein P-II WS_RS02020 PF00909 Ammonium Transporter Family WS_RS02025 PF00529 HlyD membrane-fusion protein of T1SS WS_RS02025 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WS_RS02030 PF00873 AcrB/AcrD/AcrF family WS_RS02040 PF00990 Diguanylate cyclase, GGDEF domain WS_RS02040 PF00072 Response regulator receiver domain WS_RS02050 PF00206 Lyase WS_RS02050 PF10397 Adenylosuccinate lyase C-terminus WS_RS02055 PF00849 RNA pseudouridylate synthase WS_RS02070 PF00268 Ribonucleotide reductase, small chain WS_RS02075 PF00403 Heavy-metal-associated domain WS_RS02090 PF00121 Triosephosphate isomerase WS_RS02110 PF01367 5'-3' exonuclease, C-terminal SAM fold WS_RS02110 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WS_RS02110 PF00476 DNA polymerase family A WS_RS02130 PF01230 HIT domain WS_RS02135 PF01225 Mur ligase family, catalytic domain WS_RS02135 PF08245 Mur ligase middle domain WS_RS02135 PF02875 Mur ligase family, glutamate ligase domain WS_RS02140 PF12697 Alpha/beta hydrolase family WS_RS02145 PF07478 D-ala D-ala ligase C-terminus WS_RS02145 PF01820 D-ala D-ala ligase N-terminus WS_RS02150 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding WS_RS02150 PF18381 YcaO cyclodehydratase C-terminal domain WS_RS02155 PF07499 RuvA, C-terminal domain WS_RS02155 PF01330 RuvA N terminal domain WS_RS02165 PF03023 Lipid II flippase MurJ WS_RS02170 PF01406 tRNA synthetases class I (C) catalytic domain WS_RS02175 PF01197 Ribosomal protein L31 WS_RS02180 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WS_RS02185 PF00588 SpoU rRNA Methylase family WS_RS02185 PF08032 RNA 2'-O ribose methyltransferase substrate binding WS_RS02200 PF00155 Aminotransferase class I and II WS_RS02205 PF03447 Homoserine dehydrogenase, NAD binding domain WS_RS02205 PF00742 Homoserine dehydrogenase WS_RS02205 PF01842 ACT domain WS_RS02210 PF02021 Uncharacterised protein family UPF0102 WS_RS02215 PF00085 Thioredoxin WS_RS02225 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS_RS02230 PF05173 Dihydrodipicolinate reductase, C-terminus WS_RS02230 PF01113 Dihydrodipicolinate reductase, N-terminus WS_RS02235 PF00156 Phosphoribosyl transferase domain WS_RS02240 PF16199 Radical_SAM C-terminal domain WS_RS02240 PF04055 Radical SAM superfamily WS_RS02270 PF03143 Elongation factor Tu C-terminal domain WS_RS02270 PF00009 Elongation factor Tu GTP binding domain WS_RS02270 PF03144 Elongation factor Tu domain 2 WS_RS02275 PF00471 Ribosomal protein L33 WS_RS02290 PF02357 Transcription termination factor nusG WS_RS02295 PF00298 Ribosomal protein L11, RNA binding domain WS_RS02295 PF03946 Ribosomal protein L11, N-terminal domain WS_RS02300 PF00687 Ribosomal protein L1p/L10e family WS_RS02305 PF00466 Ribosomal protein L10 WS_RS02310 PF00542 Ribosomal protein L7/L12 C-terminal domain WS_RS02310 PF16320 Ribosomal protein L7/L12 dimerisation domain WS_RS02315 PF04563 RNA polymerase beta subunit WS_RS02315 PF04565 RNA polymerase Rpb2, domain 3 WS_RS02315 PF04997 RNA polymerase Rpb1, domain 1 WS_RS02315 PF00623 RNA polymerase Rpb1, domain 2 WS_RS02315 PF04983 RNA polymerase Rpb1, domain 3 WS_RS02315 PF05000 RNA polymerase Rpb1, domain 4 WS_RS02315 PF04998 RNA polymerase Rpb1, domain 5 WS_RS02315 PF04561 RNA polymerase Rpb2, domain 2 WS_RS02315 PF10385 RNA polymerase beta subunit external 1 domain WS_RS02315 PF00562 RNA polymerase Rpb2, domain 6 WS_RS02315 PF04560 RNA polymerase Rpb2, domain 7 WS_RS02320 PF00164 Ribosomal protein S12/S23 WS_RS02325 PF00177 Ribosomal protein S7p/S5e WS_RS02330 PF03144 Elongation factor Tu domain 2 WS_RS02330 PF03764 Elongation factor G, domain IV WS_RS02330 PF14492 Elongation Factor G, domain II WS_RS02330 PF00009 Elongation factor Tu GTP binding domain WS_RS02330 PF00679 Elongation factor G C-terminus WS_RS02335 PF02811 PHP domain WS_RS02340 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 WS_RS02345 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WS_RS02350 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WS_RS02355 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WS_RS02365 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WS_RS02365 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS_RS02365 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster WS_RS02370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS_RS02370 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WS_RS02370 PF00384 Molybdopterin oxidoreductase WS_RS02370 PF01568 Molydopterin dinucleotide binding domain WS_RS02370 PF12838 4Fe-4S dicluster domain WS_RS02380 PF00146 NADH dehydrogenase WS_RS02385 PF12838 4Fe-4S dicluster domain WS_RS02390 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 WS_RS02395 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WS_RS02400 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WS_RS02400 PF00361 Proton-conducting membrane transporter WS_RS02405 PF00361 Proton-conducting membrane transporter WS_RS02405 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus WS_RS02410 PF00361 Proton-conducting membrane transporter WS_RS02435 PF00012 Hsp70 protein WS_RS02440 PF01025 GrpE WS_RS02460 PF00216 Bacterial DNA-binding protein WS_RS02470 PF01042 Endoribonuclease L-PSP WS_RS02475 PF00829 Ribosomal prokaryotic L21 protein WS_RS02480 PF01016 Ribosomal L27 protein WS_RS02485 PF01926 50S ribosome-binding GTPase WS_RS02485 PF01018 GTP1/OBG WS_RS02490 PF00696 Amino acid kinase family WS_RS02495 PF02911 Formyl transferase, C-terminal domain WS_RS02495 PF00551 Formyl transferase WS_RS02500 PF03099 Biotin/lipoate A/B protein ligase family WS_RS02500 PF08279 HTH domain WS_RS02500 PF02237 Biotin protein ligase C terminal domain WS_RS02505 PF13614 AAA domain WS_RS02510 PF17762 HTH domain found in ParB protein WS_RS02510 PF02195 ParB-like nuclease domain WS_RS02520 PF00430 ATP synthase B/B' CF(0) WS_RS02525 PF00213 ATP synthase delta (OSCP) subunit WS_RS02530 PF00306 ATP synthase alpha/beta chain, C terminal domain WS_RS02530 PF02874 ATP synthase alpha/beta family, beta-barrel domain WS_RS02530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS_RS02535 PF00231 ATP synthase WS_RS02540 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS_RS02540 PF02874 ATP synthase alpha/beta family, beta-barrel domain WS_RS02545 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WS_RS02550 PF01618 MotA/TolQ/ExbB proton channel family WS_RS02555 PF02472 Biopolymer transport protein ExbD/TolR WS_RS02565 PF04052 TolB amino-terminal domain WS_RS02580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WS_RS02585 PF00158 Sigma-54 interaction domain WS_RS02585 PF00072 Response regulator receiver domain WS_RS02585 PF02954 Bacterial regulatory protein, Fis family WS_RS02590 PF00698 Acyl transferase domain WS_RS02595 PF01048 Phosphorylase superfamily WS_RS02605 PF00437 Type II/IV secretion system protein WS_RS02620 PF00437 Type II/IV secretion system protein WS_RS02655 PF00263 Bacterial type II and III secretion system protein WS_RS02655 PF03958 Bacterial type II/III secretion system short domain WS_RS02665 PF00437 Type II/IV secretion system protein WS_RS02670 PF00482 Type II secretion system (T2SS), protein F WS_RS02675 PF01475 Ferric uptake regulator family WS_RS02680 PF02978 Signal peptide binding domain WS_RS02680 PF02881 SRP54-type protein, helical bundle domain WS_RS02680 PF00448 SRP54-type protein, GTPase domain WS_RS02685 PF00886 Ribosomal protein S16 WS_RS02695 PF01782 RimM N-terminal domain WS_RS02695 PF05239 PRC-barrel domain WS_RS02700 PF01746 tRNA (Guanine-1)-methyltransferase WS_RS02705 PF01245 Ribosomal protein L19 WS_RS02710 PF00132 Bacterial transferase hexapeptide (six repeats) WS_RS02710 PF06426 Serine acetyltransferase, N-terminal WS_RS02715 PF17810 Arginine decarboxylase helical bundle domain WS_RS02715 PF17944 Arginine decarboxylase C-terminal helical extension WS_RS02715 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain WS_RS02720 PF02130 Uncharacterized protein family UPF0054 WS_RS02730 PF03167 Uracil DNA glycosylase superfamily WS_RS02735 PF02686 Glu-tRNAGln amidotransferase C subunit WS_RS02740 PF00330 Aconitase family (aconitate hydratase) WS_RS02745 PF00543 Nitrogen regulatory protein P-II WS_RS02750 PF00456 Transketolase, thiamine diphosphate binding domain WS_RS02750 PF02780 Transketolase, C-terminal domain WS_RS02750 PF02779 Transketolase, pyrimidine binding domain WS_RS02770 PF00364 Biotin-requiring enzyme WS_RS02770 PF02436 Conserved carboxylase domain WS_RS02770 PF00682 HMGL-like WS_RS02775 PF02601 Exonuclease VII, large subunit WS_RS02775 PF13742 OB-fold nucleic acid binding domain WS_RS02780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS_RS02785 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS02790 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS02790 PF12911 N-terminal TM domain of oligopeptide transport permease C WS_RS02795 PF00005 ABC transporter WS_RS02795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WS_RS02805 PF01738 Dienelactone hydrolase family WS_RS02810 PF01435 Peptidase family M48 WS_RS02815 PF03738 Glutathionylspermidine synthase preATP-grasp WS_RS02825 PF13247 4Fe-4S dicluster domain WS_RS02835 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WS_RS02835 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WS_RS02845 PF00578 AhpC/TSA family WS_RS02850 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WS_RS02850 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WS_RS02850 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WS_RS02860 PF01728 FtsJ-like methyltransferase WS_RS02860 PF01479 S4 domain WS_RS02865 PF06574 FAD synthetase WS_RS02865 PF01687 Riboflavin kinase WS_RS02870 PF13847 Methyltransferase domain WS_RS02875 PF01546 Peptidase family M20/M25/M40 WS_RS02875 PF07687 Peptidase dimerisation domain WS_RS02890 PF07715 TonB-dependent Receptor Plug Domain WS_RS02890 PF00593 TonB dependent receptor WS_RS02910 PF16177 Acetyl-coenzyme A synthetase N-terminus WS_RS02910 PF00501 AMP-binding enzyme WS_RS02910 PF13193 AMP-binding enzyme C-terminal domain WS_RS02915 PF00929 Exonuclease WS_RS02915 PF02811 PHP domain WS_RS02915 PF14480 DNA polymerase III polC-type N-terminus I WS_RS02915 PF11490 DNA polymerase III polC-type N-terminus II WS_RS02915 PF07733 Bacterial DNA polymerase III alpha NTPase domain WS_RS02915 PF14579 Helix-hairpin-helix motif WS_RS02915 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WS_RS02925 PF00474 Sodium:solute symporter family WS_RS02930 PF04341 Protein of unknown function, DUF485 WS_RS02935 PF00474 Sodium:solute symporter family WS_RS02945 PF01553 Acyltransferase WS_RS02960 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase WS_RS02965 PF01259 SAICAR synthetase WS_RS02970 PF03572 Peptidase family S41 WS_RS02970 PF13180 PDZ domain WS_RS02975 PF00004 ATPase family associated with various cellular activities (AAA) WS_RS02975 PF07724 AAA domain (Cdc48 subfamily) WS_RS02975 PF17871 AAA lid domain WS_RS02975 PF10431 C-terminal, D2-small domain, of ClpB protein WS_RS02975 PF02861 Clp amino terminal domain, pathogenicity island component WS_RS02985 PF02441 Flavoprotein WS_RS02990 PF01467 Cytidylyltransferase-like WS_RS02995 PF02223 Thymidylate kinase WS_RS03000 PF00156 Phosphoribosyl transferase domain WS_RS03015 PF00117 Glutamine amidotransferase class-I WS_RS03020 PF00977 Histidine biosynthesis protein WS_RS03025 PF00072 Response regulator receiver domain WS_RS03035 PF00004 ATPase family associated with various cellular activities (AAA) WS_RS03035 PF17862 AAA+ lid domain WS_RS03035 PF01434 Peptidase family M41 WS_RS03040 PF02666 Phosphatidylserine decarboxylase WS_RS03045 PF01066 CDP-alcohol phosphatidyltransferase WS_RS03050 PF00682 HMGL-like WS_RS03050 PF08502 LeuA allosteric (dimerisation) domain WS_RS03065 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit WS_RS03070 PF02801 Beta-ketoacyl synthase, C-terminal domain WS_RS03070 PF00109 Beta-ketoacyl synthase, N-terminal domain WS_RS03075 PF00550 Phosphopantetheine attachment site WS_RS03085 PF01165 Ribosomal protein S21 WS_RS03095 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase WS_RS03095 PF12801 4Fe-4S binding domain WS_RS03095 PF13746 4Fe-4S dicluster domain WS_RS03115 PF00005 ABC transporter WS_RS03125 PF00512 His Kinase A (phospho-acceptor) domain WS_RS03125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS03125 PF00672 HAMP domain WS_RS03130 PF00486 Transcriptional regulatory protein, C terminal WS_RS03130 PF00072 Response regulator receiver domain WS_RS03135 PF01219 Prokaryotic diacylglycerol kinase WS_RS03140 PF08019 Phosphoethanolamine transferase EptA/EptB WS_RS03140 PF00884 Sulfatase WS_RS03150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS03150 PF00672 HAMP domain WS_RS03150 PF17200 Single Cache domain 2 WS_RS03160 PF01891 Cobalt uptake substrate-specific transmembrane region WS_RS03175 PF00005 ABC transporter WS_RS03185 PF01740 STAS domain WS_RS03185 PF00916 Sulfate permease family WS_RS03200 PF01636 Phosphotransferase enzyme family WS_RS03205 PF03641 Possible lysine decarboxylase WS_RS03210 PF00486 Transcriptional regulatory protein, C terminal WS_RS03210 PF00072 Response regulator receiver domain WS_RS03225 PF00710 Asparaginase, N-terminal WS_RS03225 PF17763 Glutaminase/Asparaginase C-terminal domain WS_RS03230 PF03605 Anaerobic c4-dicarboxylate membrane transporter WS_RS03235 PF10415 Fumarase C C-terminus WS_RS03235 PF00206 Lyase WS_RS03255 PF08003 Protein of unknown function (DUF1698) WS_RS03265 PF01467 Cytidylyltransferase-like WS_RS03275 PF01478 Type IV leader peptidase family WS_RS03275 PF06750 Bacterial Peptidase A24 N-terminal domain WS_RS03285 PF01416 tRNA pseudouridine synthase WS_RS03300 PF01370 NAD dependent epimerase/dehydratase family WS_RS03305 PF00294 pfkB family carbohydrate kinase WS_RS03305 PF01467 Cytidylyltransferase-like WS_RS03310 PF13580 SIS domain WS_RS03340 PF00425 chorismate binding enzyme WS_RS03350 PF02082 Transcriptional regulator WS_RS03360 PF00158 Sigma-54 interaction domain WS_RS03360 PF00072 Response regulator receiver domain WS_RS03360 PF02954 Bacterial regulatory protein, Fis family WS_RS03375 PF07536 HWE histidine kinase WS_RS03375 PF13426 PAS domain WS_RS03375 PF13581 Histidine kinase-like ATPase domain WS_RS03380 PF12729 Four helix bundle sensory module for signal transduction WS_RS03380 PF00672 HAMP domain WS_RS03380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS03385 PF00684 DnaJ central domain WS_RS03385 PF01556 DnaJ C terminal domain WS_RS03385 PF00226 DnaJ domain WS_RS03390 PF02132 RecR protein WS_RS03395 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WS_RS03400 PF00842 Alanine racemase, C-terminal domain WS_RS03400 PF01168 Alanine racemase, N-terminal domain WS_RS03430 PF13247 4Fe-4S dicluster domain WS_RS03430 PF00037 4Fe-4S binding domain WS_RS03435 PF00384 Molybdopterin oxidoreductase WS_RS03435 PF10518 TAT (twin-arginine translocation) pathway signal sequence WS_RS03435 PF01568 Molydopterin dinucleotide binding domain WS_RS03435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS_RS03450 PF00501 AMP-binding enzyme WS_RS03450 PF14535 AMP-binding enzyme C-terminal domain WS_RS03480 PF00291 Pyridoxal-phosphate dependent enzyme WS_RS03485 PF00881 Nitroreductase family WS_RS03490 PF07943 Penicillin-binding protein 5, C-terminal domain WS_RS03490 PF00768 D-alanyl-D-alanine carboxypeptidase WS_RS03495 PF00375 Sodium:dicarboxylate symporter family WS_RS03530 PF01568 Molydopterin dinucleotide binding domain WS_RS03530 PF00384 Molybdopterin oxidoreductase WS_RS03530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS_RS03535 PF01568 Molydopterin dinucleotide binding domain WS_RS03535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS_RS03535 PF00384 Molybdopterin oxidoreductase WS_RS03540 PF13247 4Fe-4S dicluster domain WS_RS03550 PF00962 Adenosine/AMP deaminase WS_RS03555 PF01869 BadF/BadG/BcrA/BcrD ATPase family WS_RS03560 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component WS_RS03565 PF13333 Integrase core domain WS_RS03565 PF00665 Integrase core domain WS_RS03565 PF13276 HTH-like domain WS_RS03580 PF00730 HhH-GPD superfamily base excision DNA repair protein WS_RS03580 PF14815 NUDIX domain WS_RS03585 PF00209 Sodium:neurotransmitter symporter family WS_RS03615 PF02040 Arsenical pump membrane protein WS_RS03620 PF01451 Low molecular weight phosphotyrosine protein phosphatase WS_RS03635 PF11412 Disulphide bond corrector protein DsbC WS_RS03635 PF00085 Thioredoxin WS_RS03635 PF02683 Cytochrome C biogenesis protein transmembrane region WS_RS03655 PF01451 Low molecular weight phosphotyrosine protein phosphatase WS_RS03660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS03660 PF00672 HAMP domain WS_RS03665 PF12849 PBP superfamily domain WS_RS03675 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS_RS03675 PF01568 Molydopterin dinucleotide binding domain WS_RS03675 PF00384 Molybdopterin oxidoreductase WS_RS03680 PF13247 4Fe-4S dicluster domain WS_RS03685 PF01022 Bacterial regulatory protein, arsR family WS_RS03690 PF00440 Bacterial regulatory proteins, tetR family WS_RS03690 PF17934 Tetracyclin repressor-like, C-terminal domain WS_RS03695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WS_RS03700 PF00873 AcrB/AcrD/AcrF family WS_RS03705 PF02321 Outer membrane efflux protein WS_RS03710 PF00563 EAL domain WS_RS03710 PF10388 EAL-domain associated signalling protein domain WS_RS03720 PF01177 Asp/Glu/Hydantoin racemase WS_RS03730 PF06039 Malate:quinone oxidoreductase (Mqo) WS_RS03740 PF00258 Flavodoxin WS_RS03750 PF00117 Glutamine amidotransferase class-I WS_RS03750 PF00958 GMP synthase C terminal domain WS_RS03750 PF13673 Acetyltransferase (GNAT) domain WS_RS03750 PF03352 Methyladenine glycosylase WS_RS03750 PF13302 Acetyltransferase (GNAT) domain WS_RS03760 PF00155 Aminotransferase class I and II WS_RS03765 PF12833 Helix-turn-helix domain WS_RS03770 PF14602 Hexapeptide repeat of succinyl-transferase WS_RS03770 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle WS_RS03775 PF08543 Phosphomethylpyrimidine kinase WS_RS03780 PF02581 Thiamine monophosphate synthase WS_RS03785 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) WS_RS03790 PF17788 HypF Kae1-like domain WS_RS03790 PF00708 Acylphosphatase WS_RS03790 PF01300 Telomere recombination WS_RS03790 PF07503 HypF finger WS_RS03795 PF02492 CobW/HypB/UreG, nucleotide-binding domain WS_RS03800 PF01455 HupF/HypC family WS_RS03805 PF01924 Hydrogenase formation hypA family WS_RS03815 PF00586 AIR synthase related protein, N-terminal domain WS_RS03815 PF02769 AIR synthase related protein, C-terminal domain WS_RS03820 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA WS_RS03830 PF02684 Lipid-A-disaccharide synthetase WS_RS03835 PF01272 Transcription elongation factor, GreA/GreB, C-term WS_RS03835 PF03449 Transcription elongation factor, N-terminal WS_RS03840 PF00692 dUTPase WS_RS03850 PF15437 Plasminogen-binding protein pgbA C-terminal WS_RS03855 PF03309 Type III pantothenate kinase WS_RS03860 PF01634 ATP phosphoribosyltransferase WS_RS03870 PF00990 Diguanylate cyclase, GGDEF domain WS_RS03870 PF00563 EAL domain WS_RS03870 PF08448 PAS fold WS_RS03880 PF00581 Rhodanese-like domain WS_RS03885 PF01177 Asp/Glu/Hydantoin racemase WS_RS03890 PF07497 Rho termination factor, RNA-binding domain WS_RS03890 PF07498 Rho termination factor, N-terminal domain WS_RS03890 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS_RS03900 PF13288 DXP reductoisomerase C-terminal domain WS_RS03900 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain WS_RS03900 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase WS_RS03915 PF01134 Glucose inhibited division protein A WS_RS03915 PF13932 GidA associated domain WS_RS03920 PF03462 PCRF domain WS_RS03920 PF00472 RF-1 domain WS_RS03925 PF01649 Ribosomal protein S20 WS_RS03930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WS_RS03930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WS_RS03930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WS_RS03930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WS_RS03935 PF01252 Signal peptidase (SPase) II WS_RS03945 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WS_RS03945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS_RS03945 PF03129 Anticodon binding domain WS_RS03950 PF00707 Translation initiation factor IF-3, C-terminal domain WS_RS03950 PF05198 Translation initiation factor IF-3, N-terminal domain WS_RS03955 PF01632 Ribosomal protein L35 WS_RS03960 PF00453 Ribosomal protein L20 WS_RS03965 PF00391 PEP-utilising enzyme, mobile domain WS_RS03965 PF02896 PEP-utilising enzyme, TIM barrel domain WS_RS03965 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WS_RS03970 PF00586 AIR synthase related protein, N-terminal domain WS_RS03970 PF02769 AIR synthase related protein, C-terminal domain WS_RS03970 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WS_RS03980 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WS_RS03985 PF13085 2Fe-2S iron-sulfur cluster binding domain WS_RS03985 PF13183 4Fe-4S dicluster domain WS_RS03990 PF00890 FAD binding domain WS_RS03990 PF02910 Fumarate reductase flavoprotein C-term WS_RS03995 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WS_RS04000 PF00582 Universal stress protein family WS_RS04005 PF00994 Probable molybdopterin binding domain WS_RS04005 PF03454 MoeA C-terminal region (domain IV) WS_RS04005 PF03453 MoeA N-terminal region (domain I and II) WS_RS04020 PF02634 FdhD/NarQ family WS_RS04025 PF09107 Elongation factor SelB, winged helix WS_RS04025 PF00009 Elongation factor Tu GTP binding domain WS_RS04025 PF03144 Elongation factor Tu domain 2 WS_RS04025 PF09106 Elongation factor SelB, winged helix WS_RS04030 PF03841 L-seryl-tRNA selenium transferase WS_RS04050 PF00474 Sodium:solute symporter family WS_RS04055 PF16200 C-terminal region of band_7 WS_RS04055 PF01145 SPFH domain / Band 7 family WS_RS04070 PF00990 Diguanylate cyclase, GGDEF domain WS_RS04070 PF03707 Bacterial signalling protein N terminal repeat WS_RS04070 PF13188 PAS domain WS_RS04070 PF00563 EAL domain WS_RS04075 PF00072 Response regulator receiver domain WS_RS04085 PF00072 Response regulator receiver domain WS_RS04090 PF02954 Bacterial regulatory protein, Fis family WS_RS04090 PF00158 Sigma-54 interaction domain WS_RS04090 PF00072 Response regulator receiver domain WS_RS04095 PF00583 Acetyltransferase (GNAT) family WS_RS04100 PF00202 Aminotransferase class-III WS_RS04105 PF06339 Ectoine synthase WS_RS04115 PF12729 Four helix bundle sensory module for signal transduction WS_RS04115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS04115 PF00672 HAMP domain WS_RS04125 PF00004 ATPase family associated with various cellular activities (AAA) WS_RS04125 PF17862 AAA+ lid domain WS_RS04125 PF06480 FtsH Extracellular WS_RS04125 PF01434 Peptidase family M41 WS_RS04140 PF16591 Helical bimodular sensor domain WS_RS04140 PF00672 HAMP domain WS_RS04140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS04160 PF02527 rRNA small subunit methyltransferase G WS_RS04165 PF02547 Queuosine biosynthesis protein WS_RS04170 PF00902 Sec-independent protein translocase protein (TatC) WS_RS04185 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS_RS04185 PF02403 Seryl-tRNA synthetase N-terminal domain WS_RS04195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS_RS04195 PF03466 LysR substrate binding domain WS_RS04200 PF13361 UvrD-like helicase C-terminal domain WS_RS04200 PF00580 UvrD/REP helicase N-terminal domain WS_RS04210 PF01509 TruB family pseudouridylate synthase (N terminal domain) WS_RS04215 PF02599 Global regulator protein family WS_RS04220 PF00288 GHMP kinases N terminal domain WS_RS04225 PF01668 SmpB protein WS_RS04230 PF01618 MotA/TolQ/ExbB proton channel family WS_RS04235 PF02472 Biopolymer transport protein ExbD/TolR WS_RS04270 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WS_RS04270 PF02844 Phosphoribosylglycinamide synthetase, N domain WS_RS04270 PF02843 Phosphoribosylglycinamide synthetase, C domain WS_RS04280 PF04453 LPS transport system D WS_RS04280 PF03968 OstA-like protein WS_RS04295 PF03725 3' exoribonuclease family, domain 2 WS_RS04295 PF01138 3' exoribonuclease family, domain 1 WS_RS04295 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WS_RS04295 PF00575 S1 RNA binding domain WS_RS04295 PF00013 KH domain WS_RS04300 PF00137 ATP synthase subunit C WS_RS04315 PF00072 Response regulator receiver domain WS_RS04315 PF00486 Transcriptional regulatory protein, C terminal WS_RS04320 PF00672 HAMP domain WS_RS04320 PF00512 His Kinase A (phospho-acceptor) domain WS_RS04320 PF13426 PAS domain WS_RS04320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS04325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WS_RS04325 PF00529 HlyD membrane-fusion protein of T1SS WS_RS04330 PF00873 AcrB/AcrD/AcrF family WS_RS04335 PF02321 Outer membrane efflux protein WS_RS04350 PF00005 ABC transporter WS_RS04355 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS04370 PF07715 TonB-dependent Receptor Plug Domain WS_RS04370 PF00593 TonB dependent receptor WS_RS04385 PF18793 Nitrous oxide reductase propeller repeat 2 WS_RS04385 PF18764 Nitrous oxide reductase propeller repeat WS_RS04395 PF18793 Nitrous oxide reductase propeller repeat 2 WS_RS04395 PF18764 Nitrous oxide reductase propeller repeat WS_RS04395 PF13473 Cupredoxin-like domain WS_RS04410 PF12838 4Fe-4S dicluster domain WS_RS04410 PF12800 4Fe-4S binding domain WS_RS04425 PF13187 4Fe-4S dicluster domain WS_RS04425 PF12801 4Fe-4S binding domain WS_RS04430 PF00005 ABC transporter WS_RS04455 PF00672 HAMP domain WS_RS04455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS04455 PF17202 Single cache domain 3 WS_RS04460 PF00892 EamA-like transporter family WS_RS04465 PF01914 MarC family integral membrane protein WS_RS04470 PF14535 AMP-binding enzyme C-terminal domain WS_RS04470 PF00501 AMP-binding enzyme WS_RS04480 PF00486 Transcriptional regulatory protein, C terminal WS_RS04480 PF00072 Response regulator receiver domain WS_RS04490 PF13247 4Fe-4S dicluster domain WS_RS04500 PF01568 Molydopterin dinucleotide binding domain WS_RS04500 PF00384 Molybdopterin oxidoreductase WS_RS04500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS_RS04510 PF00990 Diguanylate cyclase, GGDEF domain WS_RS04510 PF03707 Bacterial signalling protein N terminal repeat WS_RS04510 PF00563 EAL domain WS_RS04530 PF12849 PBP superfamily domain WS_RS04535 PF00005 ABC transporter WS_RS04540 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS04545 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS04550 PF12849 PBP superfamily domain WS_RS04555 PF00672 HAMP domain WS_RS04555 PF17202 Single cache domain 3 WS_RS04555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS04560 PF00072 Response regulator receiver domain WS_RS04560 PF00486 Transcriptional regulatory protein, C terminal WS_RS04565 PF11808 Phosphate regulon sensor protein PhoR WS_RS04565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS04565 PF00512 His Kinase A (phospho-acceptor) domain WS_RS04565 PF00989 PAS fold WS_RS04570 PF01256 Carbohydrate kinase WS_RS04570 PF03853 YjeF-related protein N-terminus WS_RS04575 PF05690 Thiazole biosynthesis protein ThiG WS_RS04585 PF07664 Ferrous iron transport protein B C terminus WS_RS04585 PF07670 Nucleoside recognition WS_RS04585 PF02421 Ferrous iron transport protein B WS_RS04620 PF08479 POTRA domain, ShlB-type WS_RS04620 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB WS_RS04620 PF17287 POTRA domain WS_RS04635 PF00465 Iron-containing alcohol dehydrogenase WS_RS04645 PF00563 EAL domain WS_RS04645 PF08495 FIST N domain WS_RS04645 PF10442 FIST C domain WS_RS04645 PF00990 Diguanylate cyclase, GGDEF domain WS_RS04660 PF05140 ResB-like family WS_RS04660 PF01578 Cytochrome C assembly protein WS_RS04665 PF02335 Cytochrome c552 WS_RS04670 PF03264 NapC/NirT cytochrome c family, N-terminal region WS_RS04685 PF02659 Putative manganese efflux pump WS_RS04690 PF00072 Response regulator receiver domain WS_RS04695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS04695 PF00512 His Kinase A (phospho-acceptor) domain WS_RS04695 PF09308 LuxQ, periplasmic WS_RS04695 PF00072 Response regulator receiver domain WS_RS04705 PF00005 ABC transporter WS_RS04705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WS_RS04710 PF00005 ABC transporter WS_RS04715 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS04715 PF12911 N-terminal TM domain of oligopeptide transport permease C WS_RS04720 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS04725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS_RS04735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS_RS04740 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS04745 PF12911 N-terminal TM domain of oligopeptide transport permease C WS_RS04745 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS04750 PF00005 ABC transporter WS_RS04755 PF00005 ABC transporter WS_RS04760 PF01554 MatE WS_RS04795 PF00924 Mechanosensitive ion channel WS_RS04800 PF02769 AIR synthase related protein, C-terminal domain WS_RS04800 PF00586 AIR synthase related protein, N-terminal domain WS_RS04820 PF00672 HAMP domain WS_RS04820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS04825 PF14824 Sirohaem biosynthesis protein central WS_RS04825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WS_RS04825 PF10414 Sirohaem synthase dimerisation region WS_RS04830 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain WS_RS04830 PF01077 Nitrite and sulphite reductase 4Fe-4S domain WS_RS04840 PF00899 ThiF family WS_RS04850 PF00009 Elongation factor Tu GTP binding domain WS_RS04855 PF01507 Phosphoadenosine phosphosulfate reductase family WS_RS04860 PF01507 Phosphoadenosine phosphosulfate reductase family WS_RS04870 PF01053 Cys/Met metabolism PLP-dependent enzyme WS_RS04875 PF13649 Methyltransferase domain WS_RS04880 PF07690 Major Facilitator Superfamily WS_RS04885 PF01053 Cys/Met metabolism PLP-dependent enzyme WS_RS04890 PF01709 Transcriptional regulator WS_RS04910 PF00216 Bacterial DNA-binding protein WS_RS04915 PF08447 PAS fold WS_RS04915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS04925 PF00563 EAL domain WS_RS04925 PF08495 FIST N domain WS_RS04925 PF00990 Diguanylate cyclase, GGDEF domain WS_RS04925 PF10442 FIST C domain WS_RS04935 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WS_RS04935 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WS_RS04940 PF00342 Phosphoglucose isomerase WS_RS04945 PF00365 Phosphofructokinase WS_RS04955 PF00162 Phosphoglycerate kinase WS_RS04960 PF01544 CorA-like Mg2+ transporter protein WS_RS04965 PF00486 Transcriptional regulatory protein, C terminal WS_RS04965 PF00072 Response regulator receiver domain WS_RS04970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS04970 PF08448 PAS fold WS_RS04970 PF08447 PAS fold WS_RS04975 PF13458 Periplasmic binding protein WS_RS04985 PF02254 TrkA-N domain WS_RS04985 PF00999 Sodium/hydrogen exchanger family WS_RS04990 PF01432 Peptidase family M3 WS_RS04990 PF08439 Oligopeptidase F WS_RS05020 PF00296 Luciferase-like monooxygenase WS_RS05025 PF01475 Ferric uptake regulator family WS_RS05030 PF01297 Zinc-uptake complex component A periplasmic WS_RS05035 PF00672 HAMP domain WS_RS05035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS05045 PF00551 Formyl transferase WS_RS05060 PF00771 FHIPEP family WS_RS05065 PF00312 Ribosomal protein S15 WS_RS05080 PF04509 CheC-like family WS_RS05080 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term WS_RS05090 PF00633 Helix-hairpin-helix motif WS_RS05090 PF00730 HhH-GPD superfamily base excision DNA repair protein WS_RS05090 PF10576 Iron-sulfur binding domain of endonuclease III WS_RS05110 PF00056 lactate/malate dehydrogenase, NAD binding domain WS_RS05110 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WS_RS05115 PF08442 ATP-grasp domain WS_RS05115 PF00549 CoA-ligase WS_RS05120 PF00549 CoA-ligase WS_RS05120 PF02629 CoA binding domain WS_RS05130 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase WS_RS05130 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg WS_RS05130 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II WS_RS05135 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS_RS05145 PF00692 dUTPase WS_RS05150 PF00364 Biotin-requiring enzyme WS_RS05155 PF00289 Biotin carboxylase, N-terminal domain WS_RS05155 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS_RS05155 PF02785 Biotin carboxylase C-terminal domain WS_RS05160 PF00700 Bacterial flagellin C-terminal helical region WS_RS05160 PF07196 Flagellin hook IN motif WS_RS05160 PF00669 Bacterial flagellin N-terminal helical region WS_RS05165 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WS_RS05170 PF00072 Response regulator receiver domain WS_RS05175 PF01584 CheW-like domain WS_RS05185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS05185 PF01584 CheW-like domain WS_RS05185 PF07194 P2 response regulator binding domain WS_RS05185 PF01627 Hpt domain WS_RS05185 PF02895 Signal transducing histidine kinase, homodimeric domain WS_RS05235 PF00436 Single-strand binding protein family WS_RS05250 PF00437 Type II/IV secretion system protein WS_RS05260 PF03743 Bacterial conjugation TrbI-like protein WS_RS05300 PF13087 AAA domain WS_RS05300 PF13086 AAA domain WS_RS05300 PF13195 Protein of unknown function (DUF4011) WS_RS05315 PF13614 AAA domain WS_RS05350 PF00005 ABC transporter WS_RS05360 PF09347 Domain of unknown function (DUF1989) WS_RS05365 PF02785 Biotin carboxylase C-terminal domain WS_RS05365 PF00289 Biotin carboxylase, N-terminal domain WS_RS05365 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS_RS05375 PF01425 Amidase WS_RS05380 PF01022 Bacterial regulatory protein, arsR family WS_RS05385 PF00403 Heavy-metal-associated domain WS_RS05390 PF01032 FecCD transport family WS_RS05395 PF00005 ABC transporter WS_RS05400 PF01497 Periplasmic binding protein WS_RS05405 PF07660 Secretin and TonB N terminus short domain WS_RS05405 PF00593 TonB dependent receptor WS_RS05405 PF07715 TonB-dependent Receptor Plug Domain WS_RS05410 PF13649 Methyltransferase domain WS_RS05420 PF18766 SWI2/SNF2 ATPase WS_RS05420 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) WS_RS05420 PF12008 Type I restriction and modification enzyme - subunit R C terminal WS_RS05425 PF13784 Fic/DOC family N-terminal WS_RS05425 PF02661 Fic/DOC family WS_RS05450 PF12161 HsdM N-terminal domain WS_RS05450 PF02384 N-6 DNA Methylase WS_RS05455 PF02537 CrcB-like protein, Camphor Resistance (CrcB) WS_RS05490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS_RS05490 PF01568 Molydopterin dinucleotide binding domain WS_RS05490 PF00384 Molybdopterin oxidoreductase WS_RS05495 PF13247 4Fe-4S dicluster domain WS_RS05505 PF02634 FdhD/NarQ family WS_RS05545 PF00005 ABC transporter WS_RS05545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WS_RS05550 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS05555 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS05585 PF02525 Flavodoxin-like fold WS_RS05590 PF01638 HxlR-like helix-turn-helix WS_RS05595 PF01638 HxlR-like helix-turn-helix WS_RS05615 PF13187 4Fe-4S dicluster domain WS_RS05615 PF12800 4Fe-4S binding domain WS_RS05615 PF00037 4Fe-4S binding domain WS_RS05620 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) WS_RS05625 PF12801 4Fe-4S binding domain WS_RS05625 PF12837 4Fe-4S binding domain WS_RS05630 PF12838 4Fe-4S dicluster domain WS_RS05630 PF12800 4Fe-4S binding domain WS_RS05635 PF10518 TAT (twin-arginine translocation) pathway signal sequence WS_RS05635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS_RS05635 PF01568 Molydopterin dinucleotide binding domain WS_RS05635 PF00384 Molybdopterin oxidoreductase WS_RS05640 PF01925 Sulfite exporter TauE/SafE WS_RS05650 PF00027 Cyclic nucleotide-binding domain WS_RS05650 PF00325 Bacterial regulatory proteins, crp family WS_RS05660 PF03063 Prismane/CO dehydrogenase family WS_RS05680 PF06434 Aconitate hydratase 2 N-terminus WS_RS05680 PF11791 Aconitate B N-terminal domain WS_RS05680 PF00330 Aconitase family (aconitate hydratase) WS_RS05685 PF00291 Pyridoxal-phosphate dependent enzyme WS_RS05690 PF00266 Aminotransferase class-V WS_RS05710 PF13545 Crp-like helix-turn-helix domain WS_RS05710 PF00027 Cyclic nucleotide-binding domain WS_RS05715 PF00925 GTP cyclohydrolase II WS_RS05720 PF00994 Probable molybdopterin binding domain WS_RS05720 PF03454 MoeA C-terminal region (domain IV) WS_RS05720 PF03453 MoeA N-terminal region (domain I and II) WS_RS05730 PF02391 MoaE protein WS_RS05740 PF00994 Probable molybdopterin binding domain WS_RS05745 PF01967 MoaC family WS_RS05750 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS_RS05750 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster WS_RS05755 PF01645 Conserved region in glutamate synthase WS_RS05755 PF01493 GXGXG motif WS_RS05755 PF00310 Glutamine amidotransferases class-II WS_RS05755 PF04898 Glutamate synthase central domain WS_RS05775 PF00486 Transcriptional regulatory protein, C terminal WS_RS05775 PF00072 Response regulator receiver domain WS_RS05780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS05780 PF00672 HAMP domain WS_RS05785 PF00226 DnaJ domain WS_RS05785 PF05099 Tellurite resistance protein TerB WS_RS05795 PF03705 CheR methyltransferase, all-alpha domain WS_RS05795 PF01739 CheR methyltransferase, SAM binding domain WS_RS05800 PF00072 Response regulator receiver domain WS_RS05800 PF01339 CheB methylesterase WS_RS05805 PF09186 Domain of unknown function (DUF1949) WS_RS05805 PF01205 Uncharacterized protein family UPF0029 WS_RS05810 PF03653 Uncharacterised protein family (UPF0093) WS_RS05815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS05815 PF00672 HAMP domain WS_RS05815 PF17202 Single cache domain 3 WS_RS05820 PF00206 Lyase WS_RS05820 PF14698 Argininosuccinate lyase C-terminal WS_RS05830 PF01209 ubiE/COQ5 methyltransferase family WS_RS05835 PF00589 Phage integrase family WS_RS05835 PF18644 Phage integrase SAM-like domain WS_RS05840 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WS_RS05840 PF00925 GTP cyclohydrolase II WS_RS05860 PF00440 Bacterial regulatory proteins, tetR family WS_RS05860 PF02909 Tetracyclin repressor-like, C-terminal domain WS_RS05865 PF01227 GTP cyclohydrolase I WS_RS05870 PF01435 Peptidase family M48 WS_RS05875 PF01142 tRNA pseudouridine synthase D (TruD) WS_RS05885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS05885 PF00672 HAMP domain WS_RS05885 PF16591 Helical bimodular sensor domain WS_RS05900 PF07715 TonB-dependent Receptor Plug Domain WS_RS05900 PF00593 TonB dependent receptor WS_RS05905 PF02310 B12 binding domain WS_RS05905 PF02607 B12 binding domain WS_RS05905 PF02965 Vitamin B12 dependent methionine synthase, activation domain WS_RS05905 PF00809 Pterin binding enzyme WS_RS05905 PF02574 Homocysteine S-methyltransferase WS_RS05925 PF13277 YmdB-like protein WS_RS05930 PF00271 Helicase conserved C-terminal domain WS_RS05930 PF02559 CarD-like/TRCF domain WS_RS05930 PF00270 DEAD/DEAH box helicase WS_RS05930 PF03461 TRCF domain WS_RS05930 PF17757 UvrB interaction domain WS_RS05940 PF01551 Peptidase family M23 WS_RS05940 PF04225 Opacity-associated protein A LysM-like domain WS_RS05950 PF00072 Response regulator receiver domain WS_RS05950 PF00990 Diguanylate cyclase, GGDEF domain WS_RS05960 PF00133 tRNA synthetases class I (I, L, M and V) WS_RS05960 PF09334 tRNA synthetases class I (M) WS_RS05960 PF13603 Leucyl-tRNA synthetase, Domain 2 WS_RS05970 PF02355 Protein export membrane protein WS_RS05970 PF07549 SecD/SecF GG Motif WS_RS05975 PF02355 Protein export membrane protein WS_RS05980 PF02699 Preprotein translocase subunit WS_RS05985 PF06965 Na+/H+ antiporter 1 WS_RS05990 PF12705 PD-(D/E)XK nuclease superfamily WS_RS05990 PF13361 UvrD-like helicase C-terminal domain WS_RS05990 PF00580 UvrD/REP helicase N-terminal domain WS_RS05995 PF01556 DnaJ C terminal domain WS_RS05995 PF00226 DnaJ domain WS_RS05995 PF00684 DnaJ central domain WS_RS06000 PF13411 MerR HTH family regulatory protein WS_RS06005 PF12002 MgsA AAA+ ATPase C terminal WS_RS06005 PF05496 Holliday junction DNA helicase RuvB P-loop domain WS_RS06005 PF01661 Macro domain WS_RS06005 PF16193 AAA C-terminal domain WS_RS06010 PF03548 Outer membrane lipoprotein carrier protein LolA WS_RS06015 PF01043 SecA preprotein cross-linking domain WS_RS06015 PF07516 SecA Wing and Scaffold domain WS_RS06015 PF02810 SEC-C motif WS_RS06015 PF07517 SecA DEAD-like domain WS_RS06015 PF00271 Helicase conserved C-terminal domain WS_RS06025 PF04359 Protein of unknown function (DUF493) WS_RS06030 PF03061 Thioesterase superfamily WS_RS06050 PF00664 ABC transporter transmembrane region WS_RS06050 PF00005 ABC transporter WS_RS06050 PF08021 Siderophore-interacting FAD-binding domain WS_RS06050 PF04954 Siderophore-interacting protein WS_RS06055 PF00005 ABC transporter WS_RS06055 PF00664 ABC transporter transmembrane region WS_RS06065 PF07690 Major Facilitator Superfamily WS_RS06070 PF02659 Putative manganese efflux pump WS_RS06080 PF00529 HlyD membrane-fusion protein of T1SS WS_RS06080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WS_RS06085 PF00873 AcrB/AcrD/AcrF family WS_RS06090 PF02769 AIR synthase related protein, C-terminal domain WS_RS06090 PF00586 AIR synthase related protein, N-terminal domain WS_RS06095 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain WS_RS06095 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain WS_RS06100 PF02445 Quinolinate synthetase A protein WS_RS06105 PF02666 Phosphatidylserine decarboxylase WS_RS06110 PF04377 Arginine-tRNA-protein transferase, C terminus WS_RS06110 PF04376 Arginine-tRNA-protein transferase, N terminus WS_RS06115 PF01464 Transglycosylase SLT domain WS_RS06115 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain WS_RS06125 PF08207 Elongation factor P (EF-P) KOW-like domain WS_RS06125 PF01132 Elongation factor P (EF-P) OB domain WS_RS06125 PF09285 Elongation factor P, C-terminal WS_RS06130 PF01116 Fructose-bisphosphate aldolase class-II WS_RS06150 PF10396 GTP-binding protein TrmE N-terminus WS_RS06150 PF01926 50S ribosome-binding GTPase WS_RS06150 PF12631 MnmE helical domain WS_RS06160 PF14849 YidC periplasmic domain WS_RS06160 PF02096 60Kd inner membrane protein WS_RS06165 PF01809 Putative membrane protein insertion efficiency factor WS_RS06175 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS_RS06175 PF02785 Biotin carboxylase C-terminal domain WS_RS06175 PF00289 Biotin carboxylase, N-terminal domain WS_RS06180 PF02673 Bacitracin resistance protein BacA WS_RS06190 PF07650 KH domain WS_RS06190 PF01926 50S ribosome-binding GTPase WS_RS06195 PF10431 C-terminal, D2-small domain, of ClpB protein WS_RS06195 PF07724 AAA domain (Cdc48 subfamily) WS_RS06200 PF00227 Proteasome subunit WS_RS06205 PF03948 Ribosomal protein L9, C-terminal domain WS_RS06205 PF01281 Ribosomal protein L9, N-terminal domain WS_RS06220 PF00011 Hsp20/alpha crystallin family WS_RS06225 PF00171 Aldehyde dehydrogenase family WS_RS06230 PF01235 Sodium:alanine symporter family WS_RS06235 PF04551 GcpE protein WS_RS06250 PF01230 HIT domain WS_RS06255 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WS_RS06255 PF01409 tRNA synthetases class II core domain (F) WS_RS06260 PF03484 tRNA synthetase B5 domain WS_RS06260 PF03147 Ferredoxin-fold anticodon binding domain WS_RS06260 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WS_RS06260 PF01588 Putative tRNA binding domain WS_RS06265 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WS_RS06270 PF02401 LytB protein WS_RS06275 PF00575 S1 RNA binding domain WS_RS06285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WS_RS06285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WS_RS06285 PF01842 ACT domain WS_RS06295 PF00950 ABC 3 transport family WS_RS06300 PF00005 ABC transporter WS_RS06320 PF03591 AzlC protein WS_RS06325 PF00939 Sodium:sulfate symporter transmembrane region WS_RS06330 PF01435 Peptidase family M48 WS_RS06335 PF01451 Low molecular weight phosphotyrosine protein phosphatase WS_RS06340 PF00149 Calcineurin-like phosphoesterase WS_RS06365 PF01810 LysE type translocator WS_RS06375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS06375 PF00672 HAMP domain WS_RS06375 PF02743 Cache domain WS_RS06390 PF05227 CHASE3 domain WS_RS06390 PF00672 HAMP domain WS_RS06390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS06400 PF12833 Helix-turn-helix domain WS_RS06400 PF00072 Response regulator receiver domain WS_RS06410 PF02254 TrkA-N domain WS_RS06410 PF00999 Sodium/hydrogen exchanger family WS_RS06410 PF02080 TrkA-C domain WS_RS06420 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WS_RS06420 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WS_RS06425 PF10502 Signal peptidase, peptidase S26 WS_RS06430 PF02163 Peptidase family M50 WS_RS06435 PF02502 Ribose/Galactose Isomerase WS_RS06445 PF00156 Phosphoribosyl transferase domain WS_RS06450 PF00291 Pyridoxal-phosphate dependent enzyme WS_RS06455 PF09335 SNARE associated Golgi protein WS_RS06460 PF00883 Cytosol aminopeptidase family, catalytic domain WS_RS06460 PF02789 Cytosol aminopeptidase family, N-terminal domain WS_RS06465 PF01926 50S ribosome-binding GTPase WS_RS06465 PF06071 Protein of unknown function (DUF933) WS_RS06480 PF14437 MafB19-like deaminase WS_RS06535 PF12849 PBP superfamily domain WS_RS06540 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS06545 PF00005 ABC transporter WS_RS06555 PF02915 Rubrerythrin WS_RS06560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS06560 PF00512 His Kinase A (phospho-acceptor) domain WS_RS06560 PF09308 LuxQ, periplasmic WS_RS06560 PF00072 Response regulator receiver domain WS_RS06565 PF00072 Response regulator receiver domain WS_RS06565 PF00486 Transcriptional regulatory protein, C terminal WS_RS06575 PF02254 TrkA-N domain WS_RS06575 PF02080 TrkA-C domain WS_RS06580 PF02386 Cation transport protein WS_RS06590 PF00309 Sigma-54 factor, Activator interacting domain (AID) WS_RS06590 PF04552 Sigma-54, DNA binding domain WS_RS06590 PF04963 Sigma-54 factor, core binding domain WS_RS06595 PF00111 2Fe-2S iron-sulfur cluster binding domain WS_RS06605 PF03206 Nitrogen fixation protein NifW WS_RS06610 PF13237 4Fe-4S dicluster domain WS_RS06615 PF03270 Protein of unknown function, DUF269 WS_RS06620 PF02579 Dinitrogenase iron-molybdenum cofactor WS_RS06625 PF00148 Nitrogenase component 1 type Oxidoreductase WS_RS06630 PF00148 Nitrogenase component 1 type Oxidoreductase WS_RS06635 PF00148 Nitrogenase component 1 type Oxidoreductase WS_RS06635 PF11844 Domain of unknown function (DUF3364) WS_RS06640 PF00148 Nitrogenase component 1 type Oxidoreductase WS_RS06650 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family WS_RS06660 PF00682 HMGL-like WS_RS06665 PF04055 Radical SAM superfamily WS_RS06665 PF02579 Dinitrogenase iron-molybdenum cofactor WS_RS06670 PF00248 Aldo/keto reductase family WS_RS06675 PF00890 FAD binding domain WS_RS06675 PF02910 Fumarate reductase flavoprotein C-term WS_RS06680 PF06988 NifT/FixU protein WS_RS06690 PF10431 C-terminal, D2-small domain, of ClpB protein WS_RS06690 PF07724 AAA domain (Cdc48 subfamily) WS_RS06690 PF06689 ClpX C4-type zinc finger WS_RS06695 PF02954 Bacterial regulatory protein, Fis family WS_RS06695 PF00158 Sigma-54 interaction domain WS_RS06695 PF01590 GAF domain WS_RS06700 PF02086 D12 class N6 adenine-specific DNA methyltransferase WS_RS06705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS06705 PF00672 HAMP domain WS_RS06705 PF02743 Cache domain WS_RS06730 PF07664 Ferrous iron transport protein B C terminus WS_RS06730 PF17910 FeoB cytosolic helical domain WS_RS06730 PF04023 FeoA domain WS_RS06730 PF02421 Ferrous iron transport protein B WS_RS06730 PF07670 Nucleoside recognition WS_RS06735 PF04023 FeoA domain WS_RS06745 PF07715 TonB-dependent Receptor Plug Domain WS_RS06745 PF00593 TonB dependent receptor WS_RS06750 PF02321 Outer membrane efflux protein WS_RS06755 PF12704 MacB-like periplasmic core domain WS_RS06755 PF02687 FtsX-like permease family WS_RS06755 PF00005 ABC transporter WS_RS06760 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WS_RS06765 PF00593 TonB dependent receptor WS_RS06765 PF07715 TonB-dependent Receptor Plug Domain WS_RS06785 PF07715 TonB-dependent Receptor Plug Domain WS_RS06785 PF00593 TonB dependent receptor WS_RS06795 PF02472 Biopolymer transport protein ExbD/TolR WS_RS06800 PF01618 MotA/TolQ/ExbB proton channel family WS_RS06805 PF01568 Molydopterin dinucleotide binding domain WS_RS06805 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WS_RS06805 PF00384 Molybdopterin oxidoreductase WS_RS06810 PF12800 4Fe-4S binding domain WS_RS06810 PF13247 4Fe-4S dicluster domain WS_RS06825 PF00072 Response regulator receiver domain WS_RS06825 PF12833 Helix-turn-helix domain WS_RS06830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WS_RS06835 PF08448 PAS fold WS_RS06835 PF08447 PAS fold WS_RS06835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS06880 PF02384 N-6 DNA Methylase WS_RS06880 PF12161 HsdM N-terminal domain WS_RS06885 PF09827 CRISPR associated protein Cas2 WS_RS06890 PF01867 CRISPR associated protein Cas1 WS_RS06895 PF18470 Cas9 alpha-helical lobe domain WS_RS06895 PF18541 RuvC endonuclease subdomain 3 WS_RS06895 PF13395 HNH endonuclease WS_RS06915 PF03129 Anticodon binding domain WS_RS06915 PF13393 Histidyl-tRNA synthetase WS_RS06920 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WS_RS06930 PF01474 Class-II DAHP synthetase family WS_RS06935 PF00285 Citrate synthase, C-terminal domain WS_RS06940 PF00180 Isocitrate/isopropylmalate dehydrogenase WS_RS06965 PF01734 Patatin-like phospholipase WS_RS06970 PF01361 Tautomerase enzyme WS_RS06975 PF05728 Uncharacterised protein family (UPF0227) WS_RS06980 PF00072 Response regulator receiver domain WS_RS06980 PF00486 Transcriptional regulatory protein, C terminal WS_RS06985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS06990 PF02646 RmuC family WS_RS06995 PF00005 ABC transporter WS_RS07000 PF12399 Branched-chain amino acid ATP-binding cassette transporter WS_RS07000 PF00005 ABC transporter WS_RS07005 PF11862 Domain of unknown function (DUF3382) WS_RS07005 PF02653 Branched-chain amino acid transport system / permease component WS_RS07010 PF02653 Branched-chain amino acid transport system / permease component WS_RS07015 PF13458 Periplasmic binding protein WS_RS07020 PF00588 SpoU rRNA Methylase family WS_RS07025 PF01842 ACT domain WS_RS07025 PF00551 Formyl transferase WS_RS07030 PF01343 Peptidase family S49 WS_RS07035 PF01979 Amidohydrolase family WS_RS07040 PF00924 Mechanosensitive ion channel WS_RS07045 PF01979 Amidohydrolase family WS_RS07050 PF02683 Cytochrome C biogenesis protein transmembrane region WS_RS07055 PF00270 DEAD/DEAH box helicase WS_RS07055 PF00271 Helicase conserved C-terminal domain WS_RS07060 PF00155 Aminotransferase class I and II WS_RS07065 PF08245 Mur ligase middle domain WS_RS07065 PF01225 Mur ligase family, catalytic domain WS_RS07065 PF02875 Mur ligase family, glutamate ligase domain WS_RS07075 PF01713 Smr domain WS_RS07075 PF00488 MutS domain V WS_RS07080 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WS_RS07085 PF01313 Bacterial export proteins, family 3 WS_RS07090 PF00034 Cytochrome c WS_RS07090 PF03150 Di-haem cytochrome c peroxidase WS_RS07095 PF02621 Menaquinone biosynthesis WS_RS07100 PF00154 recA bacterial DNA recombination protein WS_RS07105 PF03952 Enolase, N-terminal domain WS_RS07105 PF00113 Enolase, C-terminal TIM barrel domain WS_RS07120 PF01202 Shikimate kinase WS_RS07130 PF03631 Virulence factor BrkB WS_RS07135 PF04055 Radical SAM superfamily WS_RS07135 PF06968 Biotin and Thiamin Synthesis associated domain WS_RS07140 PF01751 Toprim domain WS_RS07140 PF01396 Topoisomerase DNA binding C4 zinc finger WS_RS07140 PF01131 DNA topoisomerase WS_RS07145 PF00669 Bacterial flagellin N-terminal helical region WS_RS07145 PF07196 Flagellin hook IN motif WS_RS07145 PF00700 Bacterial flagellin C-terminal helical region WS_RS07160 PF00881 Nitroreductase family WS_RS07165 PF07687 Peptidase dimerisation domain WS_RS07165 PF01546 Peptidase family M20/M25/M40 WS_RS07170 PF00672 HAMP domain WS_RS07170 PF17200 Single Cache domain 2 WS_RS07170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS07180 PF00004 ATPase family associated with various cellular activities (AAA) WS_RS07180 PF17862 AAA+ lid domain WS_RS07180 PF01434 Peptidase family M41 WS_RS07180 PF06480 FtsH Extracellular WS_RS07185 PF00919 Uncharacterized protein family UPF0004 WS_RS07185 PF04055 Radical SAM superfamily WS_RS07195 PF01761 3-dehydroquinate synthase WS_RS07205 PF01702 Queuine tRNA-ribosyltransferase WS_RS07210 PF02743 Cache domain WS_RS07210 PF00672 HAMP domain WS_RS07210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS07220 PF00512 His Kinase A (phospho-acceptor) domain WS_RS07220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS07225 PF00072 Response regulator receiver domain WS_RS07225 PF00486 Transcriptional regulatory protein, C terminal WS_RS07245 PF05683 Fumarase C-terminus WS_RS07250 PF05681 Fumarate hydratase (Fumerase) WS_RS07255 PF00392 Bacterial regulatory proteins, gntR family WS_RS07255 PF07729 FCD domain WS_RS07265 PF03831 PhnA domain WS_RS07265 PF08274 PhnA Zinc-Ribbon WS_RS07270 PF01435 Peptidase family M48 WS_RS07275 PF05987 Bacterial protein of unknown function (DUF898) WS_RS07285 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase WS_RS07290 PF03061 Thioesterase superfamily WS_RS07300 PF13302 Acetyltransferase (GNAT) domain WS_RS07305 PF00875 DNA photolyase WS_RS07305 PF03441 FAD binding domain of DNA photolyase WS_RS07315 PF02374 Anion-transporting ATPase WS_RS07325 PF13722 5TM C-terminal transporter carbon starvation CstA WS_RS07325 PF02554 Carbon starvation protein CstA WS_RS07335 PF00005 ABC transporter WS_RS07345 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS07350 PF18407 GCN5-related N-acetyltransferase like domain WS_RS07350 PF13344 Haloacid dehalogenase-like hydrolase WS_RS07355 PF08241 Methyltransferase domain WS_RS07360 PF13188 PAS domain WS_RS07360 PF00563 EAL domain WS_RS07360 PF03707 Bacterial signalling protein N terminal repeat WS_RS07360 PF00990 Diguanylate cyclase, GGDEF domain WS_RS07370 PF00578 AhpC/TSA family WS_RS07375 PF02687 FtsX-like permease family WS_RS07375 PF12704 MacB-like periplasmic core domain WS_RS07375 PF00005 ABC transporter WS_RS07395 PF10634 Fe2+ transport protein WS_RS07400 PF03239 Iron permease FTR1 family WS_RS07450 PF05538 Campylobacter major outer membrane protein WS_RS07455 PF03900 Porphobilinogen deaminase, C-terminal domain WS_RS07455 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain WS_RS07465 PF04073 Aminoacyl-tRNA editing domain WS_RS07465 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WS_RS07465 PF03129 Anticodon binding domain WS_RS07470 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain WS_RS07470 PF01488 Shikimate / quinate 5-dehydrogenase WS_RS07470 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain WS_RS07475 PF00348 Polyprenyl synthetase WS_RS07480 PF08757 CotH kinase protein WS_RS07490 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WS_RS07490 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WS_RS07495 PF00815 Histidinol dehydrogenase WS_RS07500 PF03471 Transporter associated domain WS_RS07500 PF00571 CBS domain WS_RS07500 PF01595 Cyclin M transmembrane N-terminal domain WS_RS07505 PF00210 Ferritin-like domain WS_RS07510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS07510 PF00512 His Kinase A (phospho-acceptor) domain WS_RS07520 PF02119 Flagellar P-ring protein WS_RS07535 PF03575 Peptidase family S51 WS_RS07540 PF04371 Porphyromonas-type peptidyl-arginine deiminase WS_RS07550 PF00814 Glycoprotease family WS_RS07555 PF08534 Redoxin WS_RS07565 PF00117 Glutamine amidotransferase class-I WS_RS07565 PF00958 GMP synthase C terminal domain WS_RS07570 PF00890 FAD binding domain WS_RS07580 PF02151 UvrB/uvrC motif WS_RS07580 PF01541 GIY-YIG catalytic domain WS_RS07580 PF08459 UvrC Helix-hairpin-helix N-terminal WS_RS07590 PF00593 TonB dependent receptor WS_RS07590 PF07715 TonB-dependent Receptor Plug Domain WS_RS07610 PF01867 CRISPR associated protein Cas1 WS_RS07615 PF09827 CRISPR associated protein Cas2 WS_RS07620 PF01930 Domain of unknown function DUF83 WS_RS07635 PF05670 NFACT protein RNA binding domain WS_RS07640 PF13476 AAA domain WS_RS07645 PF01513 ATP-NAD kinase WS_RS07665 PF00005 ABC transporter WS_RS07665 PF17755 UvrA DNA-binding domain WS_RS07665 PF17760 UvrA interaction domain WS_RS07675 PF11849 Domain of unknown function (DUF3369) WS_RS07690 PF00211 Adenylate and Guanylate cyclase catalytic domain WS_RS07695 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WS_RS07700 PF14572 Phosphoribosyl synthetase-associated domain WS_RS07700 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WS_RS07710 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term WS_RS07710 PF04509 CheC-like family WS_RS07715 PF02154 Flagellar motor switch protein FliM WS_RS07715 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term WS_RS07720 PF04539 Sigma-70 region 3 WS_RS07720 PF04542 Sigma-70 region 2 WS_RS07720 PF04545 Sigma-70, region 4 WS_RS07730 PF10609 NUBPL iron-transfer P-loop NTPase WS_RS07735 PF00448 SRP54-type protein, GTPase domain WS_RS07740 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) WS_RS07745 PF00557 Metallopeptidase family M24 WS_RS07745 PF01321 Creatinase/Prolidase N-terminal domain WS_RS07750 PF01220 Dehydroquinase class II WS_RS07755 PF02222 ATP-grasp domain WS_RS07765 PF04073 Aminoacyl-tRNA editing domain WS_RS07775 PF00580 UvrD/REP helicase N-terminal domain WS_RS07775 PF13361 UvrD-like helicase C-terminal domain WS_RS07780 PF02623 FliW protein WS_RS07785 PF10458 Valyl tRNA synthetase tRNA binding arm WS_RS07785 PF08264 Anticodon-binding domain of tRNA WS_RS07785 PF00133 tRNA synthetases class I (I, L, M and V) WS_RS07800 PF00679 Elongation factor G C-terminus WS_RS07800 PF00009 Elongation factor Tu GTP binding domain WS_RS07800 PF06421 GTP-binding protein LepA C-terminus WS_RS07800 PF03144 Elongation factor Tu domain 2 WS_RS07805 PF04055 Radical SAM superfamily WS_RS07810 PF06508 Queuosine biosynthesis protein QueC WS_RS07815 PF01242 6-pyruvoyl tetrahydropterin synthase WS_RS07820 PF00004 ATPase family associated with various cellular activities (AAA) WS_RS07820 PF16450 Proteasomal ATPase OB C-terminal domain WS_RS07820 PF17758 Proteasomal ATPase OB N-terminal domain WS_RS07825 PF16916 Dimerisation domain of Zinc Transporter WS_RS07825 PF01545 Cation efflux family WS_RS07835 PF00905 Penicillin binding protein transpeptidase domain WS_RS07835 PF03717 Penicillin-binding Protein dimerisation domain WS_RS07835 PF03793 PASTA domain WS_RS07840 PF02049 Flagellar hook-basal body complex protein FliE WS_RS07845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS_RS07845 PF00460 Flagella basal body rod protein WS_RS07850 PF00460 Flagella basal body rod protein WS_RS07855 PF01098 Cell cycle protein WS_RS07870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS07870 PF00672 HAMP domain WS_RS07870 PF17202 Single cache domain 3 WS_RS07875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS07875 PF08447 PAS fold WS_RS07880 PF01554 MatE WS_RS07885 PF00795 Carbon-nitrogen hydrolase WS_RS07890 PF00899 ThiF family WS_RS07895 PF01975 Survival protein SurE WS_RS07900 PF00348 Polyprenyl synthetase WS_RS07910 PF02575 YbaB/EbfC DNA-binding family WS_RS07915 PF02261 Aspartate decarboxylase WS_RS07925 PF01750 Hydrogenase maturation protease WS_RS07930 PF01292 Prokaryotic cytochrome b561 WS_RS07935 PF00374 Nickel-dependent hydrogenase WS_RS07940 PF10518 TAT (twin-arginine translocation) pathway signal sequence WS_RS07940 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WS_RS07940 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal WS_RS07945 PF02875 Mur ligase family, glutamate ligase domain WS_RS07945 PF08245 Mur ligase middle domain WS_RS07955 PF01106 NifU-like domain WS_RS07960 PF01196 Ribosomal protein L17 WS_RS07965 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WS_RS07965 PF01000 RNA polymerase Rpb3/RpoA insert domain WS_RS07965 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WS_RS07970 PF00163 Ribosomal protein S4/S9 N-terminal domain WS_RS07970 PF01479 S4 domain WS_RS07975 PF00411 Ribosomal protein S11 WS_RS07980 PF00416 Ribosomal protein S13/S18 WS_RS07985 PF01176 Translation initiation factor 1A / IF-1 WS_RS07990 PF00557 Metallopeptidase family M24 WS_RS07995 PF00344 SecY translocase WS_RS08000 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WS_RS08005 PF00333 Ribosomal protein S5, N-terminal domain WS_RS08005 PF03719 Ribosomal protein S5, C-terminal domain WS_RS08010 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WS_RS08015 PF00347 Ribosomal protein L6 WS_RS08020 PF00410 Ribosomal protein S8 WS_RS08025 PF00673 ribosomal L5P family C-terminus WS_RS08025 PF00281 Ribosomal protein L5 WS_RS08030 PF00467 KOW motif WS_RS08030 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WS_RS08035 PF00238 Ribosomal protein L14p/L23e WS_RS08040 PF00366 Ribosomal protein S17 WS_RS08045 PF00831 Ribosomal L29 protein WS_RS08050 PF00252 Ribosomal protein L16p/L10e WS_RS08055 PF00189 Ribosomal protein S3, C-terminal domain WS_RS08055 PF07650 KH domain WS_RS08060 PF00237 Ribosomal protein L22p/L17e WS_RS08065 PF00203 Ribosomal protein S19 WS_RS08070 PF00181 Ribosomal Proteins L2, RNA binding domain WS_RS08070 PF03947 Ribosomal Proteins L2, C-terminal domain WS_RS08075 PF00276 Ribosomal protein L23 WS_RS08080 PF00573 Ribosomal protein L4/L1 family WS_RS08085 PF00297 Ribosomal protein L3 WS_RS08090 PF00338 Ribosomal protein S10p/S20e WS_RS08100 PF01351 Ribonuclease HII WS_RS08115 PF04055 Radical SAM superfamily WS_RS08115 PF06969 HemN C-terminal domain WS_RS08120 PF13439 Glycosyltransferase Family 4 WS_RS08120 PF00534 Glycosyl transferases group 1 WS_RS08135 PF00072 Response regulator receiver domain WS_RS08140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS08140 PF00072 Response regulator receiver domain WS_RS08140 PF00512 His Kinase A (phospho-acceptor) domain WS_RS08140 PF18415 Histidine kinase receptor ArcB trans-membrane domain WS_RS08140 PF00989 PAS fold WS_RS08140 PF01627 Hpt domain WS_RS08145 PF00293 NUDIX domain WS_RS08150 PF01842 ACT domain WS_RS08150 PF00696 Amino acid kinase family WS_RS08150 PF13840 ACT domain WS_RS08165 PF00809 Pterin binding enzyme WS_RS08180 PF00183 Hsp90 protein WS_RS08185 PF00953 Glycosyl transferase family 4 WS_RS08195 PF02535 ZIP Zinc transporter WS_RS08200 PF03649 Uncharacterised protein family (UPF0014) WS_RS08205 PF03471 Transporter associated domain WS_RS08205 PF00999 Sodium/hydrogen exchanger family WS_RS08205 PF02080 TrkA-C domain WS_RS08215 PF10417 C-terminal domain of 1-Cys peroxiredoxin WS_RS08215 PF00578 AhpC/TSA family WS_RS08225 PF00174 Oxidoreductase molybdopterin binding domain WS_RS08230 PF01794 Ferric reductase like transmembrane component WS_RS08240 PF06969 HemN C-terminal domain WS_RS08240 PF04055 Radical SAM superfamily WS_RS08245 PF10788 Protein of unknown function (DUF2603) WS_RS08250 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WS_RS08250 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WS_RS08255 PF01261 Xylose isomerase-like TIM barrel WS_RS08275 PF00460 Flagella basal body rod protein WS_RS08275 PF07196 Flagellin hook IN motif WS_RS08275 PF07559 Flagellar basal body protein FlaE WS_RS08275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS_RS08280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS_RS08280 PF00460 Flagella basal body rod protein WS_RS08280 PF07559 Flagellar basal body protein FlaE WS_RS08280 PF07196 Flagellin hook IN motif WS_RS08285 PF03963 Flagellar hook capping protein - N-terminal region WS_RS08285 PF13860 FlgD Ig-like domain WS_RS08285 PF13861 FlgD Tudor-like domain WS_RS08295 PF03144 Elongation factor Tu domain 2 WS_RS08295 PF00679 Elongation factor G C-terminus WS_RS08295 PF00009 Elongation factor Tu GTP binding domain WS_RS08300 PF03477 ATP cone domain WS_RS08300 PF00317 Ribonucleotide reductase, all-alpha domain WS_RS08300 PF02867 Ribonucleotide reductase, barrel domain WS_RS08305 PF13638 PIN domain WS_RS08305 PF02562 PhoH-like protein WS_RS08310 PF05681 Fumarate hydratase (Fumerase) WS_RS08320 PF03605 Anaerobic c4-dicarboxylate membrane transporter WS_RS08325 PF00919 Uncharacterized protein family UPF0004 WS_RS08325 PF04055 Radical SAM superfamily WS_RS08325 PF18693 TRAM domain WS_RS08330 PF01171 PP-loop family WS_RS08360 PF04055 Radical SAM superfamily WS_RS08360 PF01938 TRAM domain WS_RS08360 PF00919 Uncharacterized protein family UPF0004 WS_RS08370 PF13184 NusA-like KH domain WS_RS08370 PF08529 NusA N-terminal domain WS_RS08375 PF05538 Campylobacter major outer membrane protein WS_RS08380 PF05538 Campylobacter major outer membrane protein WS_RS08385 PF01336 OB-fold nucleic acid binding domain WS_RS08385 PF00152 tRNA synthetases class II (D, K and N) WS_RS08385 PF02938 GAD domain WS_RS08400 PF00719 Inorganic pyrophosphatase WS_RS08405 PF00361 Proton-conducting membrane transporter WS_RS08410 PF00361 Proton-conducting membrane transporter WS_RS08410 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WS_RS08410 PF13244 Domain of unknown function (DUF4040) WS_RS08415 PF00072 Response regulator receiver domain WS_RS08415 PF01584 CheW-like domain WS_RS08420 PF01653 NAD-dependent DNA ligase adenylation domain WS_RS08420 PF12826 Helix-hairpin-helix motif WS_RS08420 PF03120 NAD-dependent DNA ligase OB-fold domain WS_RS08420 PF03119 NAD-dependent DNA ligase C4 zinc finger domain WS_RS08420 PF00533 BRCA1 C Terminus (BRCT) domain WS_RS08425 PF01171 PP-loop family WS_RS08430 PF07690 Major Facilitator Superfamily WS_RS08435 PF01725 Ham1 family WS_RS08450 PF00072 Response regulator receiver domain WS_RS08450 PF00486 Transcriptional regulatory protein, C terminal WS_RS08460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS_RS08460 PF00460 Flagella basal body rod protein WS_RS08465 PF00460 Flagella basal body rod protein WS_RS08465 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WS_RS08470 PF00005 ABC transporter WS_RS08470 PF08402 TOBE domain WS_RS08475 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS08490 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain WS_RS08490 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain WS_RS08495 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS08510 PF03459 TOBE domain WS_RS08510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS_RS08515 PF00694 Aconitase C-terminal domain WS_RS08520 PF00180 Isocitrate/isopropylmalate dehydrogenase WS_RS08540 PF00486 Transcriptional regulatory protein, C terminal WS_RS08540 PF00072 Response regulator receiver domain WS_RS08550 PF01743 Poly A polymerase head domain WS_RS08550 PF01966 HD domain WS_RS08550 PF12627 Probable RNA and SrmB- binding site of polymerase A WS_RS08560 PF00490 Delta-aminolevulinic acid dehydratase WS_RS08565 PF04972 BON domain WS_RS08570 PF01810 LysE type translocator WS_RS08575 PF01594 AI-2E family transporter WS_RS08580 PF05491 RuvB C-terminal winged helix domain WS_RS08580 PF17864 RuvB AAA lid domain WS_RS08580 PF05496 Holliday junction DNA helicase RuvB P-loop domain WS_RS08585 PF02548 Ketopantoate hydroxymethyltransferase WS_RS08590 PF00290 Tryptophan synthase alpha chain WS_RS08605 PF01717 Cobalamin-independent synthase, Catalytic domain WS_RS08605 PF08267 Cobalamin-independent synthase, N-terminal domain WS_RS08630 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WS_RS08635 PF12838 4Fe-4S dicluster domain WS_RS08640 PF00374 Nickel-dependent hydrogenase WS_RS08640 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WS_RS08640 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WS_RS08645 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WS_RS08645 PF00361 Proton-conducting membrane transporter WS_RS08650 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WS_RS08655 PF00146 NADH dehydrogenase WS_RS08660 PF00361 Proton-conducting membrane transporter WS_RS08665 PF13247 4Fe-4S dicluster domain WS_RS08675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS08675 PF17202 Single cache domain 3 WS_RS08675 PF00672 HAMP domain WS_RS08680 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WS_RS08680 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WS_RS08690 PF18364 Molybdopterin oxidoreductase N-terminal domain WS_RS08690 PF00384 Molybdopterin oxidoreductase WS_RS08690 PF01568 Molydopterin dinucleotide binding domain WS_RS08705 PF02322 Cytochrome bd terminal oxidase subunit II WS_RS08710 PF01654 Cytochrome bd terminal oxidase subunit I WS_RS08735 PF00474 Sodium:solute symporter family WS_RS08745 PF03480 Bacterial extracellular solute-binding protein, family 7 WS_RS08750 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component WS_RS08755 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component WS_RS08770 PF01384 Phosphate transporter family WS_RS08775 PF00072 Response regulator receiver domain WS_RS08775 PF01584 CheW-like domain WS_RS08780 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain WS_RS08780 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain WS_RS08785 PF01084 Ribosomal protein S18 WS_RS08790 PF00436 Single-strand binding protein family WS_RS08795 PF01250 Ribosomal protein S6 WS_RS08800 PF06144 DNA polymerase III, delta subunit WS_RS08805 PF00773 RNB domain WS_RS08815 PF00311 Phosphoenolpyruvate carboxylase WS_RS08820 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain WS_RS08820 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain WS_RS08825 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain WS_RS08830 PF03776 Septum formation topological specificity factor MinE WS_RS08850 PF03652 Holliday junction resolvase WS_RS08855 PF01808 AICARFT/IMPCHase bienzyme WS_RS08855 PF02142 MGS-like domain WS_RS08860 PF00202 Aminotransferase class-III WS_RS08880 PF00140 Sigma-70 factor, region 1.2 WS_RS08880 PF04542 Sigma-70 region 2 WS_RS08880 PF04545 Sigma-70, region 4 WS_RS08880 PF04539 Sigma-70 region 3 WS_RS08895 PF00561 alpha/beta hydrolase fold WS_RS08900 PF01053 Cys/Met metabolism PLP-dependent enzyme WS_RS08905 PF00571 CBS domain WS_RS08905 PF00478 IMP dehydrogenase / GMP reductase domain WS_RS08910 PF01425 Amidase WS_RS08915 PF01264 Chorismate synthase WS_RS08920 PF14622 Ribonuclease-III-like WS_RS08920 PF00035 Double-stranded RNA binding motif WS_RS08925 PF00075 RNase H WS_RS08935 PF08275 DNA primase catalytic core, N-terminal domain WS_RS08935 PF13662 Toprim domain WS_RS08935 PF16730 DnaG-primase C-terminal, helicase-binding domain WS_RS08935 PF01807 CHC2 zinc finger WS_RS08950 PF01522 Polysaccharide deacetylase WS_RS08960 PF00535 Glycosyl transferase family 2 WS_RS08970 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WS_RS08975 PF02541 Ppx/GppA phosphatase family WS_RS08980 PF12838 4Fe-4S dicluster domain WS_RS08985 PF00218 Indole-3-glycerol phosphate synthase WS_RS08995 PF03692 Putative zinc- or iron-chelating domain WS_RS09000 PF05175 Methyltransferase small domain WS_RS09005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS09005 PF08447 PAS fold WS_RS09005 PF13426 PAS domain WS_RS09010 PF02348 Cytidylyltransferase WS_RS09020 PF03466 LysR substrate binding domain WS_RS09020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS_RS09025 PF00890 FAD binding domain WS_RS09025 PF02910 Fumarate reductase flavoprotein C-term WS_RS09030 PF13085 2Fe-2S iron-sulfur cluster binding domain WS_RS09030 PF13183 4Fe-4S dicluster domain WS_RS09035 PF02754 Cysteine-rich domain WS_RS09040 PF12729 Four helix bundle sensory module for signal transduction WS_RS09040 PF00672 HAMP domain WS_RS09040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS09045 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase WS_RS09045 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain WS_RS09055 PF00239 Resolvase, N terminal domain WS_RS09055 PF02796 Helix-turn-helix domain of resolvase WS_RS09060 PF00512 His Kinase A (phospho-acceptor) domain WS_RS09060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS09110 PF01747 ATP-sulfurylase WS_RS09110 PF14306 PUA-like domain WS_RS09115 PF00486 Transcriptional regulatory protein, C terminal WS_RS09115 PF00072 Response regulator receiver domain WS_RS09120 PF02542 YgbB family WS_RS09120 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WS_RS09125 PF01964 Radical SAM ThiC family WS_RS09130 PF01883 Iron-sulfur cluster assembly protein WS_RS09130 PF10609 NUBPL iron-transfer P-loop NTPase WS_RS09135 PF00005 ABC transporter WS_RS09135 PF09383 NIL domain WS_RS09140 PF00528 Binding-protein-dependent transport system inner membrane component WS_RS09145 PF03180 NLPA lipoprotein WS_RS09155 PF03458 UPF0126 domain WS_RS09160 PF00132 Bacterial transferase hexapeptide (six repeats) WS_RS09165 PF13089 Polyphosphate kinase N-terminal domain WS_RS09165 PF02503 Polyphosphate kinase middle domain WS_RS09165 PF13090 Polyphosphate kinase C-terminal domain 2 WS_RS09165 PF17941 Polyphosphate kinase C-terminal domain 1 WS_RS09170 PF00672 HAMP domain WS_RS09170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS09170 PF16591 Helical bimodular sensor domain WS_RS09180 PF00593 TonB dependent receptor WS_RS09180 PF07715 TonB-dependent Receptor Plug Domain WS_RS09185 PF00072 Response regulator receiver domain WS_RS09185 PF00486 Transcriptional regulatory protein, C terminal WS_RS09190 PF12282 Signal transduction histidine kinase WS_RS09190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS09190 PF07568 Histidine kinase WS_RS09195 PF00672 HAMP domain WS_RS09195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS09195 PF02203 Tar ligand binding domain homologue WS_RS09205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS09205 PF00672 HAMP domain WS_RS09205 PF16591 Helical bimodular sensor domain WS_RS09215 PF12344 Ultra-violet resistance protein B WS_RS09215 PF02151 UvrB/uvrC motif WS_RS09215 PF00271 Helicase conserved C-terminal domain WS_RS09215 PF04851 Type III restriction enzyme, res subunit WS_RS09215 PF17757 UvrB interaction domain WS_RS09230 PF00271 Helicase conserved C-terminal domain WS_RS09230 PF18074 Primosomal protein N C-terminal domain WS_RS09230 PF00270 DEAD/DEAH box helicase WS_RS09230 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WS_RS09255 PF02405 Permease MlaE WS_RS09265 PF01648 4'-phosphopantetheinyl transferase superfamily WS_RS09270 PF00004 ATPase family associated with various cellular activities (AAA) WS_RS09270 PF05362 Lon protease (S16) C-terminal proteolytic domain WS_RS09270 PF02190 ATP-dependent protease La (LON) substrate-binding domain WS_RS09275 PF13525 Outer membrane lipoprotein WS_RS09280 PF02623 FliW protein WS_RS09285 PF03807 NADP oxidoreductase coenzyme F420-dependent WS_RS09285 PF14748 Pyrroline-5-carboxylate reductase dimerisation WS_RS09305 PF01479 S4 domain WS_RS09305 PF00849 RNA pseudouridylate synthase WS_RS09310 PF00664 ABC transporter transmembrane region WS_RS09310 PF00005 ABC transporter WS_RS09315 PF00072 Response regulator receiver domain WS_RS09315 PF13426 PAS domain WS_RS09315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS09325 PF14579 Helix-hairpin-helix motif WS_RS09325 PF02811 PHP domain WS_RS09325 PF07733 Bacterial DNA polymerase III alpha NTPase domain WS_RS09325 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WS_RS09340 PF07726 ATPase family associated with various cellular activities (AAA) WS_RS09340 PF17863 AAA lid domain WS_RS09345 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WS_RS09345 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WS_RS09350 PF02504 Fatty acid synthesis protein WS_RS09355 PF01783 Ribosomal L32p protein family WS_RS09365 PF00334 Nucleoside diphosphate kinase WS_RS09370 PF00037 4Fe-4S binding domain WS_RS09375 PF02773 S-adenosylmethionine synthetase, C-terminal domain WS_RS09375 PF02772 S-adenosylmethionine synthetase, central domain WS_RS09375 PF00438 S-adenosylmethionine synthetase, N-terminal domain WS_RS09380 PF10417 C-terminal domain of 1-Cys peroxiredoxin WS_RS09380 PF00578 AhpC/TSA family WS_RS09385 PF02779 Transketolase, pyrimidine binding domain WS_RS09385 PF13292 1-deoxy-D-xylulose-5-phosphate synthase WS_RS09385 PF02780 Transketolase, C-terminal domain WS_RS09395 PF01706 FliG C-terminal domain WS_RS09395 PF14841 FliG middle domain WS_RS09395 PF14842 FliG N-terminal domain WS_RS09400 PF01514 Secretory protein of YscJ/FliF family WS_RS09400 PF08345 Flagellar M-ring protein C-terminal WS_RS09405 PF00155 Aminotransferase class I and II WS_RS09410 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WS_RS09410 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WS_RS09410 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WS_RS09410 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WS_RS09415 PF04909 Amidohydrolase WS_RS09420 PF00581 Rhodanese-like domain WS_RS09425 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WS_RS09425 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WS_RS09430 PF02934 GatB/GatE catalytic domain WS_RS09430 PF02637 GatB domain WS_RS09435 PF06463 Molybdenum Cofactor Synthesis C WS_RS09435 PF04055 Radical SAM superfamily WS_RS09440 PF12804 MobA-like NTP transferase domain WS_RS09450 PF01312 FlhB HrpN YscU SpaS Family WS_RS09455 PF01368 DHH family WS_RS09455 PF02272 DHHA1 domain WS_RS09470 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase WS_RS09480 PF08544 GHMP kinases C terminal WS_RS09480 PF00288 GHMP kinases N terminal domain WS_RS09485 PF11987 Translation-initiation factor 2 WS_RS09485 PF00009 Elongation factor Tu GTP binding domain WS_RS09485 PF04760 Translation initiation factor IF-2, N-terminal region WS_RS09490 PF02033 Ribosome-binding factor A WS_RS09495 PF17384 RimP C-terminal SH3 domain WS_RS09495 PF02576 RimP N-terminal domain WS_RS09500 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WS_RS09500 PF01872 RibD C-terminal domain WS_RS09515 PF09383 NIL domain WS_RS09515 PF00005 ABC transporter WS_RS09520 PF02405 Permease MlaE WS_RS09550 PF00589 Phage integrase family WS_RS09550 PF14659 Phage integrase, N-terminal SAM-like domain WS_RS09595 PF08245 Mur ligase middle domain WS_RS09600 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 WS_RS09600 PF00953 Glycosyl transferase family 4 WS_RS09605 PF01676 Metalloenzyme superfamily WS_RS09605 PF06415 BPG-independent PGAM N-terminus (iPGM_N) WS_RS09610 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WS_RS09610 PF01926 50S ribosome-binding GTPase WS_RS09620 PF00892 EamA-like transporter family WS_RS09625 PF01475 Ferric uptake regulator family WS_RS09635 PF07992 Pyridine nucleotide-disulphide oxidoreductase WS_RS09640 PF02743 Cache domain WS_RS09640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS09640 PF00512 His Kinase A (phospho-acceptor) domain WS_RS09645 PF00486 Transcriptional regulatory protein, C terminal WS_RS09645 PF00072 Response regulator receiver domain WS_RS09650 PF00155 Aminotransferase class I and II WS_RS09655 PF00905 Penicillin binding protein transpeptidase domain WS_RS09655 PF00912 Transglycosylase WS_RS09655 PF17092 Penicillin-binding protein OB-like domain WS_RS09660 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WS_RS09660 PF00117 Glutamine amidotransferase class-I WS_RS09670 PF01966 HD domain WS_RS09695 PF00709 Adenylosuccinate synthetase WS_RS09700 PF13393 Histidyl-tRNA synthetase WS_RS09705 PF01255 Putative undecaprenyl diphosphate synthase WS_RS09715 PF02441 Flavoprotein WS_RS09715 PF04127 DNA / pantothenate metabolism flavoprotein WS_RS09720 PF02719 Polysaccharide biosynthesis protein WS_RS09725 PF00905 Penicillin binding protein transpeptidase domain WS_RS09725 PF03717 Penicillin-binding Protein dimerisation domain WS_RS09735 PF00583 Acetyltransferase (GNAT) family WS_RS09740 PF01926 50S ribosome-binding GTPase WS_RS09760 PF00475 Imidazoleglycerol-phosphate dehydratase WS_RS09765 PF03330 Lytic transglycolase WS_RS09765 PF05036 Sporulation related domain WS_RS09770 PF06725 3D domain WS_RS09770 PF01476 LysM domain WS_RS09775 PF01026 TatD related DNase WS_RS09785 PF00677 Lumazine binding domain WS_RS09790 PF01312 FlhB HrpN YscU SpaS Family WS_RS09800 PF01195 Peptidyl-tRNA hydrolase WS_RS09805 PF14693 Ribosomal protein TL5, C-terminal domain WS_RS09805 PF01386 Ribosomal L25p family WS_RS09810 PF00923 Transaldolase/Fructose-6-phosphate aldolase WS_RS09820 PF01584 CheW-like domain WS_RS09825 PF00072 Response regulator receiver domain WS_RS09825 PF01584 CheW-like domain WS_RS09825 PF01627 Hpt domain WS_RS09825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS09825 PF02895 Signal transducing histidine kinase, homodimeric domain WS_RS09830 PF00072 Response regulator receiver domain WS_RS09830 PF01584 CheW-like domain WS_RS09840 PF02774 Semialdehyde dehydrogenase, dimerisation domain WS_RS09840 PF01118 Semialdehyde dehydrogenase, NAD binding domain WS_RS09855 PF14602 Hexapeptide repeat of succinyl-transferase WS_RS09855 PF12804 MobA-like NTP transferase domain WS_RS09860 PF01618 MotA/TolQ/ExbB proton channel family WS_RS09865 PF00691 OmpA family WS_RS09865 PF13677 Membrane MotB of proton-channel complex MotA/MotB WS_RS09870 PF00813 FliP family WS_RS09875 PF05958 tRNA (Uracil-5-)-methyltransferase WS_RS09885 PF12170 DNA polymerase III tau subunit V interacting with alpha WS_RS09885 PF12169 DNA polymerase III subunits gamma and tau domain III WS_RS09890 PF00591 Glycosyl transferase family, a/b domain WS_RS09890 PF02885 Glycosyl transferase family, helical bundle domain WS_RS09895 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE WS_RS09900 PF00005 ABC transporter WS_RS09900 PF12399 Branched-chain amino acid ATP-binding cassette transporter WS_RS09905 PF00309 Sigma-54 factor, Activator interacting domain (AID) WS_RS09905 PF04552 Sigma-54, DNA binding domain WS_RS09905 PF04963 Sigma-54 factor, core binding domain WS_RS09925 PF09424 Yqey-like protein WS_RS09930 PF02107 Flagellar L-ring protein WS_RS09935 PF02348 Cytidylyltransferase WS_RS09950 PF08666 SAF domain WS_RS09950 PF03102 NeuB family WS_RS09955 PF00291 Pyridoxal-phosphate dependent enzyme WS_RS09960 PF01790 Prolipoprotein diacylglyceryl transferase WS_RS09970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS09970 PF13188 PAS domain WS_RS09970 PF00512 His Kinase A (phospho-acceptor) domain WS_RS09970 PF00072 Response regulator receiver domain WS_RS09970 PF08448 PAS fold WS_RS09975 PF00672 HAMP domain WS_RS09975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS09980 PF00849 RNA pseudouridylate synthase WS_RS09985 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) WS_RS09985 PF02390 Putative methyltransferase WS_RS09995 PF02091 Glycyl-tRNA synthetase alpha subunit WS_RS10010 PF00731 AIR carboxylase WS_RS10015 PF01136 Peptidase family U32 WS_RS10025 PF00120 Glutamine synthetase, catalytic domain WS_RS10025 PF03951 Glutamine synthetase, beta-Grasp domain WS_RS10030 PF00106 short chain dehydrogenase WS_RS10035 PF02664 S-Ribosylhomocysteinase (LuxS) WS_RS10040 PF08447 PAS fold WS_RS10040 PF08448 PAS fold WS_RS10040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS10045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WS_RS10050 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg WS_RS10050 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II WS_RS10060 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase WS_RS10065 PF13419 Haloacid dehalogenase-like hydrolase WS_RS10070 PF01554 MatE WS_RS10075 PF00380 Ribosomal protein S9/S16 WS_RS10080 PF00572 Ribosomal protein L13 WS_RS10090 PF00696 Amino acid kinase family WS_RS10105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WS_RS10105 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WS_RS10120 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WS_RS10120 PF02142 MGS-like domain WS_RS10120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WS_RS10125 PF17284 Spermidine synthase tetramerisation domain WS_RS10130 PF01121 Dephospho-CoA kinase WS_RS10135 PF01678 Diaminopimelate epimerase WS_RS10145 PF00355 Rieske [2Fe-2S] domain WS_RS10150 PF00033 Cytochrome b/b6/petB WS_RS10150 PF00032 Cytochrome b(C-terminal)/b6/petD WS_RS10160 PF04452 RNA methyltransferase WS_RS10170 PF00762 Ferrochelatase WS_RS10180 PF05140 ResB-like family WS_RS10180 PF01578 Cytochrome C assembly protein WS_RS10185 PF01479 S4 domain WS_RS10195 PF00764 Arginosuccinate synthase WS_RS10200 PF00586 AIR synthase related protein, N-terminal domain WS_RS10200 PF02769 AIR synthase related protein, C-terminal domain WS_RS10215 PF08501 Shikimate dehydrogenase substrate binding domain WS_RS10225 PF00403 Heavy-metal-associated domain WS_RS10230 PF00117 Glutamine amidotransferase class-I WS_RS10235 PF01699 Sodium/calcium exchanger protein WS_RS10245 PF00156 Phosphoribosyl transferase domain WS_RS10250 PF00860 Permease family WS_RS10255 PF04055 Radical SAM superfamily WS_RS10260 PF00483 Nucleotidyl transferase WS_RS10265 PF00117 Glutamine amidotransferase class-I WS_RS10270 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WS_RS10270 PF00391 PEP-utilising enzyme, mobile domain WS_RS10295 PF13537 Glutamine amidotransferase domain WS_RS10295 PF00733 Asparagine synthase WS_RS10300 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WS_RS10305 PF00132 Bacterial transferase hexapeptide (six repeats) WS_RS10310 PF01408 Oxidoreductase family, NAD-binding Rossmann fold WS_RS10310 PF02894 Oxidoreductase family, C-terminal alpha/beta domain WS_RS10315 PF02350 UDP-N-acetylglucosamine 2-epimerase WS_RS10330 PF00733 Asparagine synthase WS_RS10330 PF13537 Glutamine amidotransferase domain WS_RS10355 PF00700 Bacterial flagellin C-terminal helical region WS_RS10355 PF07196 Flagellin hook IN motif WS_RS10355 PF00669 Bacterial flagellin N-terminal helical region WS_RS10365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS10370 PF00486 Transcriptional regulatory protein, C terminal WS_RS10370 PF00072 Response regulator receiver domain WS_RS10380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WS_RS10380 PF03466 LysR substrate binding domain WS_RS10385 PF03601 Conserved hypothetical protein 698 WS_RS10390 PF01106 NifU-like domain WS_RS10390 PF04324 BFD-like [2Fe-2S] binding domain WS_RS10390 PF01592 NifU-like N terminal domain WS_RS10395 PF00266 Aminotransferase class-V WS_RS10400 PF18269 T3SS EscN ATPase C-terminal domain WS_RS10400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WS_RS10405 PF05698 Bacterial trigger factor protein (TF) C-terminus WS_RS10405 PF05697 Bacterial trigger factor protein (TF) WS_RS10405 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WS_RS10410 PF00574 Clp protease WS_RS10420 PF01327 Polypeptide deformylase WS_RS10425 PF13335 Magnesium chelatase, subunit ChlI C-terminal WS_RS10425 PF01078 Magnesium chelatase, subunit ChlI WS_RS10430 PF00005 ABC transporter WS_RS10430 PF12848 ABC transporter WS_RS10435 PF04264 YceI-like domain WS_RS10440 PF00749 tRNA synthetases class I (E and Q), catalytic domain WS_RS10450 PF01180 Dihydroorotate dehydrogenase WS_RS10455 PF00675 Insulinase (Peptidase family M16) WS_RS10455 PF05193 Peptidase M16 inactive domain WS_RS10460 PF00701 Dihydrodipicolinate synthetase family WS_RS10470 PF01066 CDP-alcohol phosphatidyltransferase WS_RS10475 PF02163 Peptidase family M50 WS_RS10475 PF17820 PDZ domain WS_RS10480 PF01168 Alanine racemase, N-terminal domain WS_RS10485 PF13180 PDZ domain WS_RS10485 PF17820 PDZ domain WS_RS10495 PF02511 Thymidylate synthase complementing protein WS_RS10500 PF02075 Crossover junction endodeoxyribonuclease RuvC WS_RS10510 PF02253 Phospholipase A1 WS_RS10515 PF01584 CheW-like domain WS_RS10520 PF00563 EAL domain WS_RS10520 PF12792 CSS motif domain associated with EAL WS_RS10525 PF00534 Glycosyl transferases group 1 WS_RS10525 PF13439 Glycosyltransferase Family 4 WS_RS10530 PF00072 Response regulator receiver domain WS_RS10530 PF00486 Transcriptional regulatory protein, C terminal WS_RS10535 PF00672 HAMP domain WS_RS10535 PF17202 Single cache domain 3 WS_RS10535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS10545 PF07963 Prokaryotic N-terminal methylation motif WS_RS10545 PF08334 Type II secretion system (T2SS), protein G WS_RS10550 PF08334 Type II secretion system (T2SS), protein G WS_RS10550 PF07963 Prokaryotic N-terminal methylation motif WS_RS10555 PF00512 His Kinase A (phospho-acceptor) domain WS_RS10555 PF02743 Cache domain WS_RS10555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS10560 PF00149 Calcineurin-like phosphoesterase WS_RS10570 PF00990 Diguanylate cyclase, GGDEF domain WS_RS10570 PF08495 FIST N domain WS_RS10570 PF00563 EAL domain WS_RS10570 PF10442 FIST C domain WS_RS10575 PF00990 Diguanylate cyclase, GGDEF domain WS_RS10575 PF05230 MASE2 domain WS_RS10580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS10580 PF16591 Helical bimodular sensor domain WS_RS10580 PF00672 HAMP domain WS_RS10585 PF00072 Response regulator receiver domain WS_RS10585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS10585 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) WS_RS10585 PF01627 Hpt domain WS_RS10585 PF00672 HAMP domain WS_RS10585 PF00512 His Kinase A (phospho-acceptor) domain WS_RS10600 PF08447 PAS fold WS_RS10600 PF08448 PAS fold WS_RS10600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS10605 PF16591 Helical bimodular sensor domain WS_RS10605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS10605 PF00672 HAMP domain WS_RS10615 PF00990 Diguanylate cyclase, GGDEF domain WS_RS10615 PF08448 PAS fold WS_RS10620 PF01425 Amidase WS_RS10635 PF08447 PAS fold WS_RS10635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS10640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS10650 PF00989 PAS fold WS_RS10655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS10655 PF00512 His Kinase A (phospho-acceptor) domain WS_RS10655 PF00989 PAS fold WS_RS10660 PF08448 PAS fold WS_RS10660 PF08447 PAS fold WS_RS10660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS10665 PF00350 Dynamin family WS_RS10675 PF03544 Gram-negative bacterial TonB protein C-terminal WS_RS10685 PF01814 Hemerythrin HHE cation binding domain WS_RS10690 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain WS_RS10690 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain WS_RS10695 PF00990 Diguanylate cyclase, GGDEF domain WS_RS10695 PF00072 Response regulator receiver domain WS_RS10725 PF00990 Diguanylate cyclase, GGDEF domain WS_RS10735 PF02001 Protein of unknown function DUF134 WS_RS10745 PF00989 PAS fold WS_RS10745 PF00512 His Kinase A (phospho-acceptor) domain WS_RS10745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WS_RS10770 PF00072 Response regulator receiver domain WS_RS10770 PF12833 Helix-turn-helix domain WS_RS10775 PF00563 EAL domain WS_RS10775 PF03707 Bacterial signalling protein N terminal repeat WS_RS10775 PF00990 Diguanylate cyclase, GGDEF domain WS_RS10780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WS_RS10780 PF08447 PAS fold WS_RS10780 PF13426 PAS domain