locus-tag class description VB87_RS00025 PF02463 RecF/RecN/SMC N terminal domain VB87_RS00110 PF00155 Aminotransferase class I and II VB87_RS00165 PF00712 DNA polymerase III beta subunit, N-terminal domain VB87_RS00165 PF02767 DNA polymerase III beta subunit, central domain VB87_RS00165 PF02768 DNA polymerase III beta subunit, C-terminal domain VB87_RS00185 PF00204 DNA gyrase B VB87_RS00185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS00185 PF01751 Toprim domain VB87_RS00185 PF00986 DNA gyrase B subunit, carboxyl terminus VB87_RS00450 PF01070 FMN-dependent dehydrogenase VB87_RS00475 PF00308 Bacterial dnaA protein VB87_RS00475 PF11638 DnaA N-terminal domain VB87_RS00475 PF08299 Bacterial dnaA protein helix-turn-helix VB87_RS00480 PF02767 DNA polymerase III beta subunit, central domain VB87_RS00480 PF00712 DNA polymerase III beta subunit, N-terminal domain VB87_RS00480 PF02768 DNA polymerase III beta subunit, C-terminal domain VB87_RS00485 PF02463 RecF/RecN/SMC N terminal domain VB87_RS00490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS00490 PF01751 Toprim domain VB87_RS00490 PF00986 DNA gyrase B subunit, carboxyl terminus VB87_RS00490 PF00204 DNA gyrase B VB87_RS00490 PF18053 DNA gyrase B subunit insert domain VB87_RS00495 PF02517 CPBP intramembrane metalloprotease VB87_RS00500 PF01435 Peptidase family M48 VB87_RS00510 PF03544 Gram-negative bacterial TonB protein C-terminal VB87_RS00515 PF01618 MotA/TolQ/ExbB proton channel family VB87_RS00520 PF02472 Biopolymer transport protein ExbD/TolR VB87_RS00525 PF02472 Biopolymer transport protein ExbD/TolR VB87_RS00535 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ VB87_RS00545 PF13396 Phospholipase_D-nuclease N-terminal VB87_RS00545 PF13091 PLD-like domain VB87_RS00550 PF04055 Radical SAM superfamily VB87_RS00560 PF00155 Aminotransferase class I and II VB87_RS00565 PF01070 FMN-dependent dehydrogenase VB87_RS00575 PF07055 Enoyl reductase FAD binding domain VB87_RS00575 PF12241 Trans-2-enoyl-CoA reductase catalytic region VB87_RS00575 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase VB87_RS00580 PF00294 pfkB family carbohydrate kinase VB87_RS00590 PF13538 UvrD-like helicase C-terminal domain VB87_RS00595 PF00580 UvrD/REP helicase N-terminal domain VB87_RS00595 PF13361 UvrD-like helicase C-terminal domain VB87_RS00595 PF12705 PD-(D/E)XK nuclease superfamily VB87_RS00600 PF17946 RecC C-terminal domain VB87_RS00605 PF00005 ABC transporter VB87_RS00610 PF02405 Permease MlaE VB87_RS00615 PF02470 MlaD protein VB87_RS00630 PF04333 MlaA lipoprotein VB87_RS00635 PF00255 Glutathione peroxidase VB87_RS00640 PF02646 RmuC family VB87_RS00645 PF02614 Glucuronate isomerase VB87_RS00650 PF00331 Glycosyl hydrolase family 10 VB87_RS00650 PF03422 Carbohydrate binding module (family 6) VB87_RS00650 PF00553 Cellulose binding domain VB87_RS00670 PF04616 Glycosyl hydrolases family 43 VB87_RS00680 PF01553 Acyltransferase VB87_RS00690 PF00356 Bacterial regulatory proteins, lacI family VB87_RS00700 PF04820 Tryptophan halogenase VB87_RS00705 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family VB87_RS00710 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) VB87_RS00720 PF00331 Glycosyl hydrolase family 10 VB87_RS00720 PF07859 alpha/beta hydrolase fold VB87_RS00725 PF03783 Curli production assembly/transport component CsgG VB87_RS00735 PF05643 Putative bacterial lipoprotein (DUF799) VB87_RS00740 PF00351 Biopterin-dependent aromatic amino acid hydroxylase VB87_RS00745 PF01037 Lrp/AsnC ligand binding domain VB87_RS00755 PF01232 Mannitol dehydrogenase Rossmann domain VB87_RS00755 PF08125 Mannitol dehydrogenase C-terminal domain VB87_RS00760 PF07691 PA14 domain VB87_RS00760 PF14310 Fibronectin type III-like domain VB87_RS00760 PF00933 Glycosyl hydrolase family 3 N terminal domain VB87_RS00760 PF01915 Glycosyl hydrolase family 3 C-terminal domain VB87_RS00765 PF04616 Glycosyl hydrolases family 43 VB87_RS00765 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain VB87_RS00770 PF13378 Enolase C-terminal domain-like VB87_RS00770 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VB87_RS00780 PF07488 Glycosyl hydrolase family 67 middle domain VB87_RS00780 PF07477 Glycosyl hydrolase family 67 C-terminus VB87_RS00780 PF03648 Glycosyl hydrolase family 67 N-terminus VB87_RS00785 PF00356 Bacterial regulatory proteins, lacI family VB87_RS00795 PF01171 PP-loop family VB87_RS00800 PF04381 Putative exonuclease, RdgC VB87_RS00810 PF12146 Serine aminopeptidase, S33 VB87_RS00815 PF00762 Ferrochelatase VB87_RS00825 PF02416 mttA/Hcf106 family VB87_RS00830 PF02416 mttA/Hcf106 family VB87_RS00835 PF00902 Sec-independent protein translocase protein (TatC) VB87_RS00845 PF00117 Glutamine amidotransferase class-I VB87_RS00845 PF00958 GMP synthase C terminal domain VB87_RS00855 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VB87_RS00855 PF00437 Type II/IV secretion system protein VB87_RS00860 PF02091 Glycyl-tRNA synthetase alpha subunit VB87_RS00865 PF02092 Glycyl-tRNA synthetase beta subunit VB87_RS00865 PF05746 DALR anticodon binding domain VB87_RS00870 PF02677 Epoxyqueuosine reductase QueH VB87_RS00885 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain VB87_RS00885 PF06165 Glycosyltransferase family 36 VB87_RS00890 PF01434 Peptidase family M41 VB87_RS00890 PF17862 AAA+ lid domain VB87_RS00890 PF00004 ATPase family associated with various cellular activities (AAA) VB87_RS00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS00895 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS00900 PF13181 Tetratricopeptide repeat VB87_RS00905 PF00593 TonB dependent receptor VB87_RS00905 PF07715 TonB-dependent Receptor Plug Domain VB87_RS00915 PF02659 Putative manganese efflux pump VB87_RS00930 PF00072 Response regulator receiver domain VB87_RS00930 PF00196 Bacterial regulatory proteins, luxR family VB87_RS00935 PF13193 AMP-binding enzyme C-terminal domain VB87_RS00935 PF00501 AMP-binding enzyme VB87_RS00935 PF16177 Acetyl-coenzyme A synthetase N-terminus VB87_RS00945 PF00474 Sodium:solute symporter family VB87_RS00950 PF00171 Aldehyde dehydrogenase family VB87_RS00955 PF03009 Glycerophosphoryl diester phosphodiesterase family VB87_RS00960 PF00639 PPIC-type PPIASE domain VB87_RS00960 PF09312 SurA N-terminal domain VB87_RS00975 PF04226 Transglycosylase associated protein VB87_RS00980 PF01648 4'-phosphopantetheinyl transferase superfamily VB87_RS00985 PF09423 PhoD-like phosphatase VB87_RS00985 PF16655 PhoD-like phosphatase, N-terminal domain VB87_RS00990 PF02527 rRNA small subunit methyltransferase G VB87_RS00995 PF13614 AAA domain VB87_RS01000 PF02195 ParB-like nuclease domain VB87_RS01000 PF17762 HTH domain found in ParB protein VB87_RS01005 PF01370 NAD dependent epimerase/dehydratase family VB87_RS01010 PF00535 Glycosyl transferase family 2 VB87_RS01020 PF00830 Ribosomal L28 family VB87_RS01025 PF00471 Ribosomal protein L33 VB87_RS01030 PF13091 PLD-like domain VB87_RS01030 PF13396 Phospholipase_D-nuclease N-terminal VB87_RS01040 PF00580 UvrD/REP helicase N-terminal domain VB87_RS01040 PF13361 UvrD-like helicase C-terminal domain VB87_RS01050 PF00582 Universal stress protein family VB87_RS01070 PF01612 3'-5' exonuclease VB87_RS01070 PF00476 DNA polymerase family A VB87_RS01070 PF01367 5'-3' exonuclease, C-terminal SAM fold VB87_RS01070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VB87_RS01075 PF01218 Coproporphyrinogen III oxidase VB87_RS01090 PF01654 Cytochrome bd terminal oxidase subunit I VB87_RS01095 PF02322 Cytochrome bd terminal oxidase subunit II VB87_RS01100 PF00501 AMP-binding enzyme VB87_RS01100 PF13193 AMP-binding enzyme C-terminal domain VB87_RS01110 PF04820 Tryptophan halogenase VB87_RS01115 PF00550 Phosphopantetheine attachment site VB87_RS01130 PF07977 FabA-like domain VB87_RS01160 PF07519 Tannase and feruloyl esterase VB87_RS01165 PF01494 FAD binding domain VB87_RS01170 PF00535 Glycosyl transferase family 2 VB87_RS01180 PF02801 Beta-ketoacyl synthase, C-terminal domain VB87_RS01180 PF00109 Beta-ketoacyl synthase, N-terminal domain VB87_RS01185 PF05166 YcgL domain VB87_RS01195 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VB87_RS01195 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VB87_RS01200 PF00999 Sodium/hydrogen exchanger family VB87_RS01200 PF02254 TrkA-N domain VB87_RS01205 PF13607 Succinyl-CoA ligase like flavodoxin domain VB87_RS01205 PF13380 CoA binding domain VB87_RS01205 PF00583 Acetyltransferase (GNAT) family VB87_RS01215 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VB87_RS01215 PF00364 Biotin-requiring enzyme VB87_RS01215 PF02785 Biotin carboxylase C-terminal domain VB87_RS01215 PF00289 Biotin carboxylase, N-terminal domain VB87_RS01225 PF01039 Carboxyl transferase domain VB87_RS01230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VB87_RS01230 PF02770 Acyl-CoA dehydrogenase, middle domain VB87_RS01230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VB87_RS01235 PF13442 Cytochrome C oxidase, cbb3-type, subunit III VB87_RS01250 PF07683 Cobalamin synthesis protein cobW C-terminal domain VB87_RS01250 PF02492 CobW/HypB/UreG, nucleotide-binding domain VB87_RS01260 PF03969 AFG1-like ATPase VB87_RS01265 PF01047 MarR family VB87_RS01270 PF02566 OsmC-like protein VB87_RS01275 PF02867 Ribonucleotide reductase, barrel domain VB87_RS01275 PF00317 Ribonucleotide reductase, all-alpha domain VB87_RS01275 PF03477 ATP cone domain VB87_RS01280 PF00268 Ribonucleotide reductase, small chain VB87_RS01295 PF02146 Sir2 family VB87_RS01300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VB87_RS01305 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase VB87_RS01305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VB87_RS01315 PF01717 Cobalamin-independent synthase, Catalytic domain VB87_RS01315 PF08267 Cobalamin-independent synthase, N-terminal domain VB87_RS01460 PF00145 C-5 cytosine-specific DNA methylase VB87_RS01645 PF00589 Phage integrase family VB87_RS01650 PF01207 Dihydrouridine synthase (Dus) VB87_RS01660 PF00072 Response regulator receiver domain VB87_RS01660 PF00486 Transcriptional regulatory protein, C terminal VB87_RS01665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS01680 PF06167 Glucose-regulated metallo-peptidase M90 VB87_RS01690 PF03099 Biotin/lipoate A/B protein ligase family VB87_RS01690 PF02237 Biotin protein ligase C terminal domain VB87_RS01695 PF03309 Type III pantothenate kinase VB87_RS01725 PF00579 tRNA synthetases class I (W and Y) VB87_RS01740 PF00892 EamA-like transporter family VB87_RS01755 PF04397 LytTr DNA-binding domain VB87_RS01755 PF00072 Response regulator receiver domain VB87_RS01760 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS01770 PF00199 Catalase VB87_RS01775 PF03334 Na+/H+ antiporter subunit VB87_RS01780 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) VB87_RS01790 PF00361 Proton-conducting membrane transporter VB87_RS01795 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L VB87_RS01800 PF00361 Proton-conducting membrane transporter VB87_RS01800 PF13244 Domain of unknown function (DUF4040) VB87_RS01800 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter VB87_RS01800 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VB87_RS01815 PF01259 SAICAR synthetase VB87_RS01820 PF00684 DnaJ central domain VB87_RS01820 PF01556 DnaJ C terminal domain VB87_RS01820 PF00226 DnaJ domain VB87_RS01825 PF00834 Ribulose-phosphate 3 epimerase family VB87_RS01835 PF04715 Anthranilate synthase component I, N terminal region VB87_RS01835 PF00425 chorismate binding enzyme VB87_RS01845 PF00117 Glutamine amidotransferase class-I VB87_RS01855 PF02885 Glycosyl transferase family, helical bundle domain VB87_RS01855 PF00591 Glycosyl transferase family, a/b domain VB87_RS01860 PF00218 Indole-3-glycerol phosphate synthase VB87_RS01875 PF00027 Cyclic nucleotide-binding domain VB87_RS01875 PF00325 Bacterial regulatory proteins, crp family VB87_RS01880 PF02675 S-adenosylmethionine decarboxylase VB87_RS01890 PF03232 Ubiquinone biosynthesis protein COQ7 VB87_RS01895 PF00572 Ribosomal protein L13 VB87_RS01900 PF00380 Ribosomal protein S9/S16 VB87_RS01915 PF00293 NUDIX domain VB87_RS01920 PF04324 BFD-like [2Fe-2S] binding domain VB87_RS01925 PF00210 Ferritin-like domain VB87_RS01930 PF00672 HAMP domain VB87_RS01930 PF01627 Hpt domain VB87_RS01930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS01930 PF00072 Response regulator receiver domain VB87_RS01930 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VB87_RS01930 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS01935 PF00072 Response regulator receiver domain VB87_RS01935 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS01935 PF00563 EAL domain VB87_RS01950 PF01521 Iron-sulphur cluster biosynthesis VB87_RS01955 PF00293 NUDIX domain VB87_RS01955 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain VB87_RS01955 PF09297 NADH pyrophosphatase zinc ribbon domain VB87_RS01970 PF12805 FUSC-like inner membrane protein yccS VB87_RS01975 PF02843 Phosphoribosylglycinamide synthetase, C domain VB87_RS01975 PF02844 Phosphoribosylglycinamide synthetase, N domain VB87_RS01975 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain VB87_RS01980 PF01808 AICARFT/IMPCHase bienzyme VB87_RS01980 PF02142 MGS-like domain VB87_RS01990 PF02954 Bacterial regulatory protein, Fis family VB87_RS02005 PF02785 Biotin carboxylase C-terminal domain VB87_RS02005 PF00289 Biotin carboxylase, N-terminal domain VB87_RS02005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VB87_RS02010 PF00364 Biotin-requiring enzyme VB87_RS02015 PF01220 Dehydroquinase class II VB87_RS02020 PF00578 AhpC/TSA family VB87_RS02025 PF02683 Cytochrome C biogenesis protein transmembrane region VB87_RS02025 PF11412 Disulphide bond corrector protein DsbC VB87_RS02030 PF03091 CutA1 divalent ion tolerance protein VB87_RS02035 PF00166 Chaperonin 10 Kd subunit VB87_RS02040 PF00118 TCP-1/cpn60 chaperonin family VB87_RS02045 PF07715 TonB-dependent Receptor Plug Domain VB87_RS02045 PF00593 TonB dependent receptor VB87_RS02050 PF00793 DAHP synthetase I family VB87_RS02055 PF01541 GIY-YIG catalytic domain VB87_RS02060 PF08335 GlnD PII-uridylyltransferase VB87_RS02060 PF03710 Glutamate-ammonia ligase adenylyltransferase VB87_RS02065 PF03009 Glycerophosphoryl diester phosphodiesterase family VB87_RS02085 PF00881 Nitroreductase family VB87_RS02090 PF04264 YceI-like domain VB87_RS02120 PF17831 Pyruvate dehydrogenase E1 component middle domain VB87_RS02120 PF00456 Transketolase, thiamine diphosphate binding domain VB87_RS02130 PF00132 Bacterial transferase hexapeptide (six repeats) VB87_RS02135 PF07690 Major Facilitator Superfamily VB87_RS02140 PF00529 HlyD membrane-fusion protein of T1SS VB87_RS02140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VB87_RS02145 PF00873 AcrB/AcrD/AcrF family VB87_RS02150 PF02321 Outer membrane efflux protein VB87_RS02155 PF00069 Protein kinase domain VB87_RS02155 PF00400 WD domain, G-beta repeat VB87_RS02160 PF07859 alpha/beta hydrolase fold VB87_RS02165 PF01134 Glucose inhibited division protein A VB87_RS02165 PF13932 GidA associated domain VB87_RS02185 PF13649 Methyltransferase domain VB87_RS02195 PF12697 Alpha/beta hydrolase family VB87_RS02200 PF00155 Aminotransferase class I and II VB87_RS02205 PF06968 Biotin and Thiamin Synthesis associated domain VB87_RS02205 PF04055 Radical SAM superfamily VB87_RS02215 PF01040 UbiA prenyltransferase family VB87_RS02225 PF00561 alpha/beta hydrolase fold VB87_RS02230 PF13335 Magnesium chelatase, subunit ChlI C-terminal VB87_RS02230 PF01078 Magnesium chelatase, subunit ChlI VB87_RS02235 PF04380 Membrane fusogenic activity VB87_RS02240 PF00543 Nitrogen regulatory protein P-II VB87_RS02245 PF17284 Spermidine synthase tetramerisation domain VB87_RS02250 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VB87_RS02250 PF17810 Arginine decarboxylase helical bundle domain VB87_RS02250 PF17944 Arginine decarboxylase C-terminal helical extension VB87_RS02255 PF00668 Condensation domain VB87_RS02255 PF00501 AMP-binding enzyme VB87_RS02255 PF00550 Phosphopantetheine attachment site VB87_RS02255 PF00975 Thioesterase domain VB87_RS02255 PF13193 AMP-binding enzyme C-terminal domain VB87_RS02260 PF03033 Glycosyltransferase family 28 N-terminal domain VB87_RS02260 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase VB87_RS02265 PF01757 Acyltransferase family VB87_RS02280 PF00106 short chain dehydrogenase VB87_RS02290 PF05746 DALR anticodon binding domain VB87_RS02290 PF00750 tRNA synthetases class I (R) VB87_RS02290 PF03485 Arginyl tRNA synthetase N terminal domain VB87_RS02295 PF04002 RadC-like JAB domain VB87_RS02300 PF02441 Flavoprotein VB87_RS02300 PF04127 DNA / pantothenate metabolism flavoprotein VB87_RS02305 PF00692 dUTPase VB87_RS02310 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VB87_RS02310 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VB87_RS02310 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VB87_RS02310 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VB87_RS02320 PF00156 Phosphoribosyl transferase domain VB87_RS02330 PF07690 Major Facilitator Superfamily VB87_RS02340 PF03702 Anhydro-N-acetylmuramic acid kinase VB87_RS02345 PF01551 Peptidase family M23 VB87_RS02345 PF04225 Opacity-associated protein A LysM-like domain VB87_RS02350 PF00579 tRNA synthetases class I (W and Y) VB87_RS02380 PF08240 Alcohol dehydrogenase GroES-like domain VB87_RS02380 PF00107 Zinc-binding dehydrogenase VB87_RS02395 PF01551 Peptidase family M23 VB87_RS02400 PF13180 PDZ domain VB87_RS02400 PF03572 Peptidase family S41 VB87_RS02405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VB87_RS02405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VB87_RS02405 PF01842 ACT domain VB87_RS02420 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) VB87_RS02425 PF18327 Proline utilization A proline dehydrogenase N-terminal domain VB87_RS02425 PF14850 DNA-binding domain of Proline dehydrogenase VB87_RS02425 PF01619 Proline dehydrogenase VB87_RS02425 PF00171 Aldehyde dehydrogenase family VB87_RS02435 PF02790 Cytochrome C oxidase subunit II, transmembrane domain VB87_RS02435 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VB87_RS02440 PF00115 Cytochrome C and Quinol oxidase polypeptide I VB87_RS02445 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 VB87_RS02450 PF00510 Cytochrome c oxidase subunit III VB87_RS02470 PF02628 Cytochrome oxidase assembly protein VB87_RS02475 PF01040 UbiA prenyltransferase family VB87_RS02485 PF13593 SBF-like CPA transporter family (DUF4137) VB87_RS02495 PF01807 CHC2 zinc finger VB87_RS02495 PF10410 DnaB-helicase binding domain of primase VB87_RS02495 PF08278 DNA primase DnaG DnaB-binding VB87_RS02495 PF08275 DNA primase catalytic core, N-terminal domain VB87_RS02500 PF03631 Virulence factor BrkB VB87_RS02515 PF01165 Ribosomal protein S21 VB87_RS02520 PF00814 Glycoprotease family VB87_RS02525 PF02152 Dihydroneopterin aldolase VB87_RS02530 PF00933 Glycosyl hydrolase family 3 N terminal domain VB87_RS02530 PF01915 Glycosyl hydrolase family 3 C-terminal domain VB87_RS02530 PF14310 Fibronectin type III-like domain VB87_RS02535 PF13520 Amino acid permease VB87_RS02540 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VB87_RS02540 PF13378 Enolase C-terminal domain-like VB87_RS02550 PF01510 N-acetylmuramoyl-L-alanine amidase VB87_RS02570 PF07063 Domain of unknown function (DUF1338) VB87_RS02575 PF02789 Cytosol aminopeptidase family, N-terminal domain VB87_RS02575 PF00883 Cytosol aminopeptidase family, catalytic domain VB87_RS02585 PF01594 AI-2E family transporter VB87_RS02605 PF13180 PDZ domain VB87_RS02605 PF00595 PDZ domain VB87_RS02630 PF07308 Protein of unknown function (DUF1456) VB87_RS02635 PF01266 FAD dependent oxidoreductase VB87_RS02635 PF16901 C-terminal domain of alpha-glycerophosphate oxidase VB87_RS02640 PF00230 Major intrinsic protein VB87_RS02645 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VB87_RS02645 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VB87_RS02650 PF00248 Aldo/keto reductase family VB87_RS02665 PF01557 Fumarylacetoacetate (FAA) hydrolase family VB87_RS02670 PF13378 Enolase C-terminal domain-like VB87_RS02670 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VB87_RS02675 PF05336 L-rhamnose mutarotase VB87_RS02680 PF07690 Major Facilitator Superfamily VB87_RS02685 PF09339 IclR helix-turn-helix domain VB87_RS02685 PF01614 Bacterial transcriptional regulator VB87_RS02695 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain VB87_RS02695 PF00749 tRNA synthetases class I (E and Q), catalytic domain VB87_RS02710 PF01625 Peptide methionine sulfoxide reductase VB87_RS02715 PF00923 Transaldolase/Fructose-6-phosphate aldolase VB87_RS02725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VB87_RS02725 PF03466 LysR substrate binding domain VB87_RS02730 PF07992 Pyridine nucleotide-disulphide oxidoreductase VB87_RS02730 PF13192 Thioredoxin domain VB87_RS02735 PF10417 C-terminal domain of 1-Cys peroxiredoxin VB87_RS02735 PF00578 AhpC/TSA family VB87_RS02740 PF05175 Methyltransferase small domain VB87_RS02740 PF17827 PrmC N-terminal domain VB87_RS02745 PF00561 alpha/beta hydrolase fold VB87_RS02755 PF00293 NUDIX domain VB87_RS02760 PF00476 DNA polymerase family A VB87_RS02760 PF01612 3'-5' exonuclease VB87_RS02760 PF01367 5'-3' exonuclease, C-terminal SAM fold VB87_RS02760 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain VB87_RS02775 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VB87_RS02775 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VB87_RS02795 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VB87_RS02800 PF02233 NAD(P) transhydrogenase beta subunit VB87_RS02815 PF01063 Amino-transferase class IV VB87_RS02830 PF03358 NADPH-dependent FMN reductase VB87_RS02835 PF03631 Virulence factor BrkB VB87_RS02840 PF00578 AhpC/TSA family VB87_RS02850 PF00994 Probable molybdopterin binding domain VB87_RS02855 PF01341 Glycosyl hydrolases family 6 VB87_RS02855 PF00553 Cellulose binding domain VB87_RS02855 PF00041 Fibronectin type III domain VB87_RS02865 PF00472 RF-1 domain VB87_RS02865 PF03462 PCRF domain VB87_RS02870 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain VB87_RS02870 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain VB87_RS02870 PF01488 Shikimate / quinate 5-dehydrogenase VB87_RS02880 PF03550 Outer membrane lipoprotein LolB VB87_RS02885 PF00288 GHMP kinases N terminal domain VB87_RS02885 PF08544 GHMP kinases C terminal VB87_RS02895 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase VB87_RS02895 PF14572 Phosphoribosyl synthetase-associated domain VB87_RS02900 PF14693 Ribosomal protein TL5, C-terminal domain VB87_RS02900 PF01386 Ribosomal L25p family VB87_RS02905 PF01195 Peptidyl-tRNA hydrolase VB87_RS02910 PF06071 Protein of unknown function (DUF933) VB87_RS02910 PF01926 50S ribosome-binding GTPase VB87_RS02930 PF03144 Elongation factor Tu domain 2 VB87_RS02930 PF00009 Elongation factor Tu GTP binding domain VB87_RS02930 PF03143 Elongation factor Tu C-terminal domain VB87_RS02940 PF00584 SecE/Sec61-gamma subunits of protein translocation complex VB87_RS02945 PF00467 KOW motif VB87_RS02945 PF02357 Transcription termination factor nusG VB87_RS02950 PF00298 Ribosomal protein L11, RNA binding domain VB87_RS02950 PF03946 Ribosomal protein L11, N-terminal domain VB87_RS02955 PF00687 Ribosomal protein L1p/L10e family VB87_RS02960 PF00466 Ribosomal protein L10 VB87_RS02965 PF00542 Ribosomal protein L7/L12 C-terminal domain VB87_RS02965 PF16320 Ribosomal protein L7/L12 dimerisation domain VB87_RS02970 PF00562 RNA polymerase Rpb2, domain 6 VB87_RS02970 PF04563 RNA polymerase beta subunit VB87_RS02970 PF10385 RNA polymerase beta subunit external 1 domain VB87_RS02970 PF04561 RNA polymerase Rpb2, domain 2 VB87_RS02970 PF04560 RNA polymerase Rpb2, domain 7 VB87_RS02970 PF04565 RNA polymerase Rpb2, domain 3 VB87_RS02975 PF05000 RNA polymerase Rpb1, domain 4 VB87_RS02975 PF04997 RNA polymerase Rpb1, domain 1 VB87_RS02975 PF00623 RNA polymerase Rpb1, domain 2 VB87_RS02975 PF04983 RNA polymerase Rpb1, domain 3 VB87_RS02975 PF04998 RNA polymerase Rpb1, domain 5 VB87_RS02980 PF00164 Ribosomal protein S12/S23 VB87_RS02985 PF00177 Ribosomal protein S7p/S5e VB87_RS02990 PF00679 Elongation factor G C-terminus VB87_RS02990 PF14492 Elongation Factor G, domain II VB87_RS02990 PF00009 Elongation factor Tu GTP binding domain VB87_RS02990 PF03764 Elongation factor G, domain IV VB87_RS02990 PF03144 Elongation factor Tu domain 2 VB87_RS02995 PF03144 Elongation factor Tu domain 2 VB87_RS02995 PF00009 Elongation factor Tu GTP binding domain VB87_RS02995 PF03143 Elongation factor Tu C-terminal domain VB87_RS03000 PF00338 Ribosomal protein S10p/S20e VB87_RS03005 PF00297 Ribosomal protein L3 VB87_RS03010 PF00573 Ribosomal protein L4/L1 family VB87_RS03015 PF00276 Ribosomal protein L23 VB87_RS03020 PF00181 Ribosomal Proteins L2, RNA binding domain VB87_RS03020 PF03947 Ribosomal Proteins L2, C-terminal domain VB87_RS03025 PF00203 Ribosomal protein S19 VB87_RS03030 PF00237 Ribosomal protein L22p/L17e VB87_RS03035 PF07650 KH domain VB87_RS03035 PF00189 Ribosomal protein S3, C-terminal domain VB87_RS03040 PF00252 Ribosomal protein L16p/L10e VB87_RS03045 PF00831 Ribosomal L29 protein VB87_RS03050 PF00366 Ribosomal protein S17 VB87_RS03055 PF00238 Ribosomal protein L14p/L23e VB87_RS03060 PF00467 KOW motif VB87_RS03060 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 VB87_RS03065 PF00281 Ribosomal protein L5 VB87_RS03065 PF00673 ribosomal L5P family C-terminus VB87_RS03070 PF00253 Ribosomal protein S14p/S29e VB87_RS03075 PF00410 Ribosomal protein S8 VB87_RS03080 PF00347 Ribosomal protein L6 VB87_RS03085 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast VB87_RS03090 PF00333 Ribosomal protein S5, N-terminal domain VB87_RS03090 PF03719 Ribosomal protein S5, C-terminal domain VB87_RS03095 PF00327 Ribosomal protein L30p/L7e VB87_RS03100 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A VB87_RS03105 PF00344 SecY translocase VB87_RS03110 PF00416 Ribosomal protein S13/S18 VB87_RS03115 PF00411 Ribosomal protein S11 VB87_RS03120 PF00163 Ribosomal protein S4/S9 N-terminal domain VB87_RS03120 PF01479 S4 domain VB87_RS03125 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain VB87_RS03125 PF01000 RNA polymerase Rpb3/RpoA insert domain VB87_RS03125 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain VB87_RS03130 PF01196 Ribosomal protein L17 VB87_RS03135 PF02600 Disulfide bond formation protein DsbB VB87_RS03145 PF01474 Class-II DAHP synthetase family VB87_RS03155 PF00009 Elongation factor Tu GTP binding domain VB87_RS03155 PF00679 Elongation factor G C-terminus VB87_RS03155 PF03144 Elongation factor Tu domain 2 VB87_RS03160 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD VB87_RS03170 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain VB87_RS03170 PF00056 lactate/malate dehydrogenase, NAD binding domain VB87_RS03180 PF00043 Glutathione S-transferase, C-terminal domain VB87_RS03180 PF02798 Glutathione S-transferase, N-terminal domain VB87_RS03200 PF03009 Glycerophosphoryl diester phosphodiesterase family VB87_RS03215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VB87_RS03215 PF07992 Pyridine nucleotide-disulphide oxidoreductase VB87_RS03220 PF08240 Alcohol dehydrogenase GroES-like domain VB87_RS03220 PF00107 Zinc-binding dehydrogenase VB87_RS03225 PF00691 OmpA family VB87_RS03225 PF00223 Photosystem I psaA/psaB protein VB87_RS03235 PF01479 S4 domain VB87_RS03235 PF00849 RNA pseudouridylate synthase VB87_RS03240 PF00155 Aminotransferase class I and II VB87_RS03245 PF00107 Zinc-binding dehydrogenase VB87_RS03245 PF08240 Alcohol dehydrogenase GroES-like domain VB87_RS03250 PF10459 Peptidase S46 VB87_RS03255 PF00300 Histidine phosphatase superfamily (branch 1) VB87_RS03260 PF08245 Mur ligase middle domain VB87_RS03260 PF02875 Mur ligase family, glutamate ligase domain VB87_RS03275 PF00156 Phosphoribosyl transferase domain VB87_RS03280 PF04305 Protein of unknown function (DUF455) VB87_RS03290 PF00149 Calcineurin-like phosphoesterase VB87_RS03295 PF01569 PAP2 superfamily VB87_RS03300 PF00534 Glycosyl transferases group 1 VB87_RS03300 PF13439 Glycosyltransferase Family 4 VB87_RS03305 PF02541 Ppx/GppA phosphatase family VB87_RS03310 PF13089 Polyphosphate kinase N-terminal domain VB87_RS03310 PF17941 Polyphosphate kinase C-terminal domain 1 VB87_RS03310 PF13090 Polyphosphate kinase C-terminal domain 2 VB87_RS03310 PF02503 Polyphosphate kinase middle domain VB87_RS03315 PF00989 PAS fold VB87_RS03315 PF11808 Phosphate regulon sensor protein PhoR VB87_RS03315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS03315 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS03320 PF00072 Response regulator receiver domain VB87_RS03320 PF00486 Transcriptional regulatory protein, C terminal VB87_RS03325 PF13181 Tetratricopeptide repeat VB87_RS03325 PF01435 Peptidase family M48 VB87_RS03330 PF00462 Glutaredoxin VB87_RS03340 PF00180 Isocitrate/isopropylmalate dehydrogenase VB87_RS03340 PF18324 Hypothetical protein TT1725 VB87_RS03375 PF05697 Bacterial trigger factor protein (TF) VB87_RS03375 PF05698 Bacterial trigger factor protein (TF) C-terminus VB87_RS03380 PF00574 Clp protease VB87_RS03385 PF07724 AAA domain (Cdc48 subfamily) VB87_RS03385 PF06689 ClpX C4-type zinc finger VB87_RS03385 PF10431 C-terminal, D2-small domain, of ClpB protein VB87_RS03390 PF00004 ATPase family associated with various cellular activities (AAA) VB87_RS03390 PF05362 Lon protease (S16) C-terminal proteolytic domain VB87_RS03390 PF02190 ATP-dependent protease La (LON) substrate-binding domain VB87_RS03395 PF00216 Bacterial DNA-binding protein VB87_RS03415 PF13145 PPIC-type PPIASE domain VB87_RS03420 PF01464 Transglycosylase SLT domain VB87_RS03425 PF00753 Metallo-beta-lactamase superfamily VB87_RS03425 PF16123 Hydroxyacylglutathione hydrolase C-terminus VB87_RS03435 PF00075 RNase H VB87_RS03440 PF00929 Exonuclease VB87_RS03460 PF01075 Glycosyltransferase family 9 (heptosyltransferase) VB87_RS03470 PF12706 Beta-lactamase superfamily domain VB87_RS03475 PF04055 Radical SAM superfamily VB87_RS03475 PF06463 Molybdenum Cofactor Synthesis C VB87_RS03485 PF01967 MoaC family VB87_RS03490 PF02597 ThiS family VB87_RS03495 PF02391 MoaE protein VB87_RS03505 PF12170 DNA polymerase III tau subunit V interacting with alpha VB87_RS03505 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding VB87_RS03505 PF12169 DNA polymerase III subunits gamma and tau domain III VB87_RS03510 PF02575 YbaB/EbfC DNA-binding family VB87_RS03520 PF02132 RecR protein VB87_RS03520 PF13662 Toprim domain VB87_RS03525 PF01230 HIT domain VB87_RS03535 PF13559 Domain of unknown function (DUF4129) VB87_RS03535 PF01841 Transglutaminase-like superfamily VB87_RS03535 PF11992 Domain of unknown function (DUF3488) VB87_RS03545 PF17863 AAA lid domain VB87_RS03545 PF07726 ATPase family associated with various cellular activities (AAA) VB87_RS03560 PF02545 Maf-like protein VB87_RS03565 PF02620 Large ribosomal RNA subunit accumulation protein YceD VB87_RS03570 PF01783 Ribosomal L32p protein family VB87_RS03575 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VB87_RS03575 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VB87_RS03580 PF00698 Acyl transferase domain VB87_RS03590 PF00550 Phosphopantetheine attachment site VB87_RS03595 PF02801 Beta-ketoacyl synthase, C-terminal domain VB87_RS03595 PF00109 Beta-ketoacyl synthase, N-terminal domain VB87_RS03600 PF00425 chorismate binding enzyme VB87_RS03600 PF04715 Anthranilate synthase component I, N terminal region VB87_RS03605 PF02618 YceG-like family VB87_RS03610 PF02223 Thymidylate kinase VB87_RS03615 PF09115 DNA polymerase III, delta subunit, C terminal VB87_RS03650 PF00285 Citrate synthase, C-terminal domain VB87_RS03655 PF00330 Aconitase family (aconitate hydratase) VB87_RS03655 PF00694 Aconitase C-terminal domain VB87_RS03660 PF04303 PrpF protein VB87_RS03665 PF07715 TonB-dependent Receptor Plug Domain VB87_RS03665 PF00593 TonB dependent receptor VB87_RS03680 PF00593 TonB dependent receptor VB87_RS03680 PF07715 TonB-dependent Receptor Plug Domain VB87_RS03695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS03695 PF00672 HAMP domain VB87_RS03695 PF02203 Tar ligand binding domain homologue VB87_RS03700 PF08534 Redoxin VB87_RS03710 PF01556 DnaJ C terminal domain VB87_RS03710 PF00226 DnaJ domain VB87_RS03715 PF00072 Response regulator receiver domain VB87_RS03720 PF00107 Zinc-binding dehydrogenase VB87_RS03720 PF08240 Alcohol dehydrogenase GroES-like domain VB87_RS03725 PF12221 Bacterial membrane protein N terminal VB87_RS03725 PF01145 SPFH domain / Band 7 family VB87_RS03730 PF01145 SPFH domain / Band 7 family VB87_RS03735 PF00709 Adenylosuccinate synthetase VB87_RS03740 PF05506 Domain of unknown function (DUF756) VB87_RS03740 PF04185 Phosphoesterase family VB87_RS03750 PF08443 RimK-like ATP-grasp domain VB87_RS03750 PF18030 RimK PreATP-grasp domain VB87_RS03755 PF00072 Response regulator receiver domain VB87_RS03755 PF00486 Transcriptional regulatory protein, C terminal VB87_RS03760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS03760 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS03760 PF00672 HAMP domain VB87_RS03765 PF01121 Dephospho-CoA kinase VB87_RS03770 PF06750 Bacterial Peptidase A24 N-terminal domain VB87_RS03770 PF01478 Type IV leader peptidase family VB87_RS03775 PF00482 Type II secretion system (T2SS), protein F VB87_RS03780 PF00114 Pilin (bacterial filament) VB87_RS03780 PF07963 Prokaryotic N-terminal methylation motif VB87_RS03785 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VB87_RS03785 PF00437 Type II/IV secretion system protein VB87_RS03790 PF02954 Bacterial regulatory protein, Fis family VB87_RS03790 PF00158 Sigma-54 interaction domain VB87_RS03790 PF00072 Response regulator receiver domain VB87_RS03795 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS03795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS03800 PF00549 CoA-ligase VB87_RS03800 PF08442 ATP-grasp domain VB87_RS03805 PF00549 CoA-ligase VB87_RS03805 PF02629 CoA binding domain VB87_RS03845 PF13276 HTH-like domain VB87_RS03845 PF01527 Transposase VB87_RS03845 PF00665 Integrase core domain VB87_RS03845 PF13333 Integrase core domain VB87_RS03850 PF01527 Transposase VB87_RS03850 PF13333 Integrase core domain VB87_RS03850 PF13276 HTH-like domain VB87_RS03850 PF00665 Integrase core domain VB87_RS03875 PF00795 Carbon-nitrogen hydrolase VB87_RS03875 PF02540 NAD synthase VB87_RS03880 PF10017 Histidine-specific methyltransferase, SAM-dependent VB87_RS03885 PF03781 Sulfatase-modifying factor enzyme 1 VB87_RS03885 PF12867 DinB superfamily VB87_RS03895 PF00528 Binding-protein-dependent transport system inner membrane component VB87_RS03900 PF00005 ABC transporter VB87_RS03905 PF13525 Outer membrane lipoprotein VB87_RS03910 PF00849 RNA pseudouridylate synthase VB87_RS03915 PF02578 Multi-copper polyphenol oxidoreductase laccase VB87_RS03920 PF00982 Glycosyltransferase family 20 VB87_RS03925 PF00723 Glycosyl hydrolases family 15 VB87_RS03930 PF02358 Trehalose-phosphatase VB87_RS03935 PF00593 TonB dependent receptor VB87_RS03935 PF07715 TonB-dependent Receptor Plug Domain VB87_RS03965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VB87_RS03970 PF00005 ABC transporter VB87_RS03975 PF02687 FtsX-like permease family VB87_RS03975 PF12704 MacB-like periplasmic core domain VB87_RS04000 PF00004 ATPase family associated with various cellular activities (AAA) VB87_RS04000 PF07724 AAA domain (Cdc48 subfamily) VB87_RS04000 PF17871 AAA lid domain VB87_RS04000 PF10431 C-terminal, D2-small domain, of ClpB protein VB87_RS04000 PF02861 Clp amino terminal domain, pathogenicity island component VB87_RS04015 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain VB87_RS04015 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain VB87_RS04020 PF06276 Ferric iron reductase FhuF-like transporter VB87_RS04020 PF04183 IucA / IucC family VB87_RS04025 PF00083 Sugar (and other) transporter VB87_RS04025 PF07690 Major Facilitator Superfamily VB87_RS04030 PF06276 Ferric iron reductase FhuF-like transporter VB87_RS04030 PF04183 IucA / IucC family VB87_RS04040 PF07660 Secretin and TonB N terminus short domain VB87_RS04040 PF00593 TonB dependent receptor VB87_RS04040 PF07715 TonB-dependent Receptor Plug Domain VB87_RS04045 PF03328 HpcH/HpaI aldolase/citrate lyase family VB87_RS04050 PF00999 Sodium/hydrogen exchanger family VB87_RS04050 PF02254 TrkA-N domain VB87_RS04065 PF01527 Transposase VB87_RS04075 PF00128 Alpha amylase, catalytic domain VB87_RS04080 PF00593 TonB dependent receptor VB87_RS04080 PF07715 TonB-dependent Receptor Plug Domain VB87_RS04090 PF00356 Bacterial regulatory proteins, lacI family VB87_RS04095 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS04100 PF00196 Bacterial regulatory proteins, luxR family VB87_RS04100 PF00072 Response regulator receiver domain VB87_RS04105 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS04105 PF02743 Cache domain VB87_RS04105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS04115 PF00375 Sodium:dicarboxylate symporter family VB87_RS04120 PF00390 Malic enzyme, N-terminal domain VB87_RS04120 PF03949 Malic enzyme, NAD binding domain VB87_RS04120 PF01515 Phosphate acetyl/butaryl transferase VB87_RS04125 PF00664 ABC transporter transmembrane region VB87_RS04125 PF00005 ABC transporter VB87_RS04125 PF03412 Peptidase C39 family VB87_RS04150 PF03279 Bacterial lipid A biosynthesis acyltransferase VB87_RS04155 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) VB87_RS04160 PF02321 Outer membrane efflux protein VB87_RS04175 PF03707 Bacterial signalling protein N terminal repeat VB87_RS04175 PF13188 PAS domain VB87_RS04175 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS04175 PF00563 EAL domain VB87_RS04180 PF00180 Isocitrate/isopropylmalate dehydrogenase VB87_RS04185 PF00694 Aconitase C-terminal domain VB87_RS04195 PF00330 Aconitase family (aconitate hydratase) VB87_RS04205 PF08502 LeuA allosteric (dimerisation) domain VB87_RS04205 PF00682 HMGL-like VB87_RS04210 PF00291 Pyridoxal-phosphate dependent enzyme VB87_RS04220 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain VB87_RS04220 PF00205 Thiamine pyrophosphate enzyme, central domain VB87_RS04220 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain VB87_RS04225 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain VB87_RS04225 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain VB87_RS04230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS04230 PF00672 HAMP domain VB87_RS04230 PF02203 Tar ligand binding domain homologue VB87_RS04235 PF01964 Radical SAM ThiC family VB87_RS04235 PF13667 ThiC-associated domain VB87_RS04245 PF00719 Inorganic pyrophosphatase VB87_RS04255 PF03030 Inorganic H+ pyrophosphatase VB87_RS04265 PF00365 Phosphofructokinase VB87_RS04275 PF01225 Mur ligase family, catalytic domain VB87_RS04275 PF08245 Mur ligase middle domain VB87_RS04275 PF02875 Mur ligase family, glutamate ligase domain VB87_RS04295 PF00668 Condensation domain VB87_RS04295 PF00501 AMP-binding enzyme VB87_RS04295 PF00975 Thioesterase domain VB87_RS04295 PF00550 Phosphopantetheine attachment site VB87_RS04295 PF13193 AMP-binding enzyme C-terminal domain VB87_RS04300 PF09335 SNARE associated Golgi protein VB87_RS04315 PF00202 Aminotransferase class-III VB87_RS04320 PF00202 Aminotransferase class-III VB87_RS04325 PF02581 Thiamine monophosphate synthase VB87_RS04330 PF00301 Rubredoxin VB87_RS04335 PF13369 Transglutaminase-like superfamily VB87_RS04345 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VB87_RS04355 PF01812 5-formyltetrahydrofolate cyclo-ligase family VB87_RS04360 PF05164 Cell division protein ZapA VB87_RS04370 PF00563 EAL domain VB87_RS04370 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS04370 PF03707 Bacterial signalling protein N terminal repeat VB87_RS04375 PF03695 Uncharacterised protein family (UPF0149) VB87_RS04380 PF05195 Aminopeptidase P, N-terminal domain VB87_RS04380 PF00557 Metallopeptidase family M24 VB87_RS04385 PF00557 Metallopeptidase family M24 VB87_RS04400 PF06969 HemN C-terminal domain VB87_RS04400 PF04055 Radical SAM superfamily VB87_RS04405 PF01725 Ham1 family VB87_RS04410 PF03725 3' exoribonuclease family, domain 2 VB87_RS04410 PF01138 3' exoribonuclease family, domain 1 VB87_RS04415 PF03755 YicC-like family, N-terminal region VB87_RS04415 PF08340 Domain of unknown function (DUF1732) VB87_RS04420 PF00625 Guanylate kinase VB87_RS04425 PF01192 RNA polymerase Rpb6 VB87_RS04430 PF02824 TGS domain VB87_RS04430 PF13291 ACT domain VB87_RS04430 PF04607 Region found in RelA / SpoT proteins VB87_RS04435 PF01042 Endoribonuclease L-PSP VB87_RS04440 PF17191 RecG wedge domain VB87_RS04440 PF00271 Helicase conserved C-terminal domain VB87_RS04440 PF00270 DEAD/DEAH box helicase VB87_RS04450 PF13276 HTH-like domain VB87_RS04450 PF13333 Integrase core domain VB87_RS04450 PF00665 Integrase core domain VB87_RS04455 PF00294 pfkB family carbohydrate kinase VB87_RS04465 PF04085 rod shape-determining protein MreC VB87_RS04470 PF04093 rod shape-determining protein MreD VB87_RS04475 PF03717 Penicillin-binding Protein dimerisation domain VB87_RS04475 PF00905 Penicillin binding protein transpeptidase domain VB87_RS04480 PF01098 Cell cycle protein VB87_RS04490 PF00295 Glycosyl hydrolases family 28 VB87_RS04495 PF13406 Transglycosylase SLT domain VB87_RS04500 PF05036 Sporulation related domain VB87_RS04500 PF03330 Lytic transglycolase VB87_RS04505 PF00768 D-alanyl-D-alanine carboxypeptidase VB87_RS04505 PF07943 Penicillin-binding protein 5, C-terminal domain VB87_RS04510 PF04359 Protein of unknown function (DUF493) VB87_RS04515 PF03099 Biotin/lipoate A/B protein ligase family VB87_RS04520 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family VB87_RS04520 PF04055 Radical SAM superfamily VB87_RS04525 PF17804 Tail specific protease N-terminal domain VB87_RS04525 PF11818 C-terminal domain of tail specific protease (DUF3340) VB87_RS04525 PF00595 PDZ domain VB87_RS04525 PF03572 Peptidase family S41 VB87_RS04535 PF01467 Cytidylyltransferase-like VB87_RS04535 PF00293 NUDIX domain VB87_RS04555 PF08338 Domain of unknown function (DUF1731) VB87_RS04555 PF01370 NAD dependent epimerase/dehydratase family VB87_RS04565 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain VB87_RS04565 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase VB87_RS04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS04580 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS04580 PF00989 PAS fold VB87_RS04585 PF00072 Response regulator receiver domain VB87_RS04590 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS04590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS04595 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VB87_RS04620 PF03330 Lytic transglycolase VB87_RS04625 PF07702 UTRA domain VB87_RS04625 PF00392 Bacterial regulatory proteins, gntR family VB87_RS04630 PF07690 Major Facilitator Superfamily VB87_RS04635 PF00356 Bacterial regulatory proteins, lacI family VB87_RS04640 PF01380 SIS domain VB87_RS04645 PF01979 Amidohydrolase family VB87_RS04650 PF01743 Poly A polymerase head domain VB87_RS04650 PF12627 Probable RNA and SrmB- binding site of polymerase A VB87_RS04650 PF01966 HD domain VB87_RS04655 PF14718 Soluble lytic murein transglycosylase L domain VB87_RS04655 PF01464 Transglycosylase SLT domain VB87_RS04665 PF00202 Aminotransferase class-III VB87_RS04680 PF07715 TonB-dependent Receptor Plug Domain VB87_RS04680 PF00593 TonB dependent receptor VB87_RS04690 PF01323 DSBA-like thioredoxin domain VB87_RS04695 PF01323 DSBA-like thioredoxin domain VB87_RS04700 PF00034 Cytochrome c VB87_RS04705 PF01926 50S ribosome-binding GTPase VB87_RS04715 PF04107 Glutamate-cysteine ligase family 2(GCS2) VB87_RS04730 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS04730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS04730 PF00672 HAMP domain VB87_RS04735 PF00486 Transcriptional regulatory protein, C terminal VB87_RS04735 PF00072 Response regulator receiver domain VB87_RS04740 PF00107 Zinc-binding dehydrogenase VB87_RS04740 PF08240 Alcohol dehydrogenase GroES-like domain VB87_RS04745 PF00756 Putative esterase VB87_RS04770 PF00462 Glutaredoxin VB87_RS04775 PF00457 Glycosyl hydrolases family 11 VB87_RS04775 PF03422 Carbohydrate binding module (family 6) VB87_RS04775 PF01522 Polysaccharide deacetylase VB87_RS04785 PF00155 Aminotransferase class I and II VB87_RS04790 PF03193 RsgA GTPase VB87_RS04815 PF07690 Major Facilitator Superfamily VB87_RS04820 PF02347 Glycine cleavage system P-protein VB87_RS04835 PF01527 Transposase VB87_RS04855 PF08019 Phosphoethanolamine transferase EptA/EptB VB87_RS04855 PF00884 Sulfatase VB87_RS04865 PF00072 Response regulator receiver domain VB87_RS04865 PF00486 Transcriptional regulatory protein, C terminal VB87_RS04870 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS04870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS04870 PF13493 Domain of unknown function (DUF4118) VB87_RS04870 PF02702 Osmosensitive K+ channel His kinase sensor domain VB87_RS04880 PF03776 Septum formation topological specificity factor MinE VB87_RS04885 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain VB87_RS04890 PF03775 Septum formation inhibitor MinC, C-terminal domain VB87_RS04890 PF05209 Septum formation inhibitor MinC, N-terminal domain VB87_RS04900 PF07730 Histidine kinase VB87_RS04905 PF00072 Response regulator receiver domain VB87_RS04905 PF00196 Bacterial regulatory proteins, luxR family VB87_RS04945 PF02222 ATP-grasp domain VB87_RS04945 PF01370 NAD dependent epimerase/dehydratase family VB87_RS04955 PF04377 Arginine-tRNA-protein transferase, C terminus VB87_RS04955 PF04376 Arginine-tRNA-protein transferase, N terminus VB87_RS04975 PF00378 Enoyl-CoA hydratase/isomerase VB87_RS04975 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VB87_RS04975 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VB87_RS04990 PF17760 UvrA interaction domain VB87_RS04990 PF17755 UvrA DNA-binding domain VB87_RS04990 PF00005 ABC transporter VB87_RS04995 PF00829 Ribosomal prokaryotic L21 protein VB87_RS05000 PF01016 Ribosomal L27 protein VB87_RS05005 PF01018 GTP1/OBG VB87_RS05005 PF01926 50S ribosome-binding GTPase VB87_RS05010 PF01649 Ribosomal protein S20 VB87_RS05015 PF03023 Lipid II flippase MurJ VB87_RS05020 PF06574 FAD synthetase VB87_RS05020 PF01687 Riboflavin kinase VB87_RS05025 PF06827 Zinc finger found in FPG and IleRS VB87_RS05025 PF08264 Anticodon-binding domain of tRNA VB87_RS05025 PF00133 tRNA synthetases class I (I, L, M and V) VB87_RS05030 PF01252 Signal peptidase (SPase) II VB87_RS05035 PF02401 LytB protein VB87_RS05045 PF00665 Integrase core domain VB87_RS05045 PF13333 Integrase core domain VB87_RS05045 PF13276 HTH-like domain VB87_RS05050 PF00116 Cytochrome C oxidase subunit II, periplasmic domain VB87_RS05050 PF06481 COX Aromatic Rich Motif VB87_RS05055 PF00115 Cytochrome C and Quinol oxidase polypeptide I VB87_RS05060 PF00510 Cytochrome c oxidase subunit III VB87_RS05065 PF03626 Prokaryotic Cytochrome C oxidase subunit IV VB87_RS05075 PF00155 Aminotransferase class I and II VB87_RS05080 PF18073 Rubredoxin metal binding domain VB87_RS05090 PF00920 Dehydratase family VB87_RS05100 PF03466 LysR substrate binding domain VB87_RS05100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VB87_RS05110 PF13407 Periplasmic binding protein domain VB87_RS05115 PF00005 ABC transporter VB87_RS05120 PF02653 Branched-chain amino acid transport system / permease component VB87_RS05125 PF02653 Branched-chain amino acid transport system / permease component VB87_RS05130 PF00999 Sodium/hydrogen exchanger family VB87_RS05135 PF06964 Alpha-L-arabinofuranosidase C-terminal domain VB87_RS05145 PF01578 Cytochrome C assembly protein VB87_RS05150 PF02978 Signal peptide binding domain VB87_RS05150 PF02881 SRP54-type protein, helical bundle domain VB87_RS05150 PF00448 SRP54-type protein, GTPase domain VB87_RS05155 PF03060 Nitronate monooxygenase VB87_RS05165 PF00886 Ribosomal protein S16 VB87_RS05170 PF05239 PRC-barrel domain VB87_RS05170 PF01782 RimM N-terminal domain VB87_RS05175 PF01746 tRNA (Guanine-1)-methyltransferase VB87_RS05180 PF01245 Ribosomal protein L19 VB87_RS05185 PF01554 MatE VB87_RS05195 PF01479 S4 domain VB87_RS05200 PF00141 Peroxidase VB87_RS05220 PF01431 Peptidase family M13 VB87_RS05220 PF05649 Peptidase family M13 VB87_RS05230 PF07715 TonB-dependent Receptor Plug Domain VB87_RS05230 PF00593 TonB dependent receptor VB87_RS05235 PF10609 NUBPL iron-transfer P-loop NTPase VB87_RS05240 PF00692 dUTPase VB87_RS05250 PF01738 Dienelactone hydrolase family VB87_RS05260 PF03449 Transcription elongation factor, N-terminal VB87_RS05260 PF01272 Transcription elongation factor, GreA/GreB, C-term VB87_RS05270 PF02666 Phosphatidylserine decarboxylase VB87_RS05275 PF02630 SCO1/SenC VB87_RS05280 PF05175 Methyltransferase small domain VB87_RS05285 PF01264 Chorismate synthase VB87_RS05290 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VB87_RS05290 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VB87_RS05295 PF01118 Semialdehyde dehydrogenase, NAD binding domain VB87_RS05295 PF02774 Semialdehyde dehydrogenase, dimerisation domain VB87_RS05305 PF01416 tRNA pseudouridine synthase VB87_RS05310 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase VB87_RS05315 PF03466 LysR substrate binding domain VB87_RS05315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VB87_RS05320 PF00291 Pyridoxal-phosphate dependent enzyme VB87_RS05325 PF00290 Tryptophan synthase alpha chain VB87_RS05330 PF01039 Carboxyl transferase domain VB87_RS05330 PF17848 Acetyl-coA carboxylase zinc finger domain VB87_RS05335 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VB87_RS05335 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VB87_RS05335 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VB87_RS05335 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VB87_RS05350 PF00563 EAL domain VB87_RS05350 PF03707 Bacterial signalling protein N terminal repeat VB87_RS05350 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS05370 PF00121 Triosephosphate isomerase VB87_RS05375 PF03840 Preprotein translocase SecG subunit VB87_RS05385 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 VB87_RS05390 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit VB87_RS05395 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit VB87_RS05400 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit VB87_RS05410 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit VB87_RS05410 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region VB87_RS05410 PF10531 SLBB domain VB87_RS05415 PF00384 Molybdopterin oxidoreductase VB87_RS05415 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region VB87_RS05415 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal VB87_RS05420 PF00146 NADH dehydrogenase VB87_RS05425 PF12838 4Fe-4S dicluster domain VB87_RS05430 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 VB87_RS05435 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L VB87_RS05440 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus VB87_RS05440 PF00361 Proton-conducting membrane transporter VB87_RS05445 PF00361 Proton-conducting membrane transporter VB87_RS05445 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus VB87_RS05450 PF00361 Proton-conducting membrane transporter VB87_RS05460 PF17384 RimP C-terminal SH3 domain VB87_RS05460 PF02576 RimP N-terminal domain VB87_RS05465 PF00575 S1 RNA binding domain VB87_RS05465 PF08529 NusA N-terminal domain VB87_RS05465 PF13184 NusA-like KH domain VB87_RS05470 PF04760 Translation initiation factor IF-2, N-terminal region VB87_RS05470 PF08364 Bacterial translation initiation factor IF-2 associated region VB87_RS05470 PF00009 Elongation factor Tu GTP binding domain VB87_RS05470 PF11987 Translation-initiation factor 2 VB87_RS05475 PF02033 Ribosome-binding factor A VB87_RS05480 PF01509 TruB family pseudouridylate synthase (N terminal domain) VB87_RS05480 PF09157 Pseudouridine synthase II TruB, C-terminal VB87_RS05480 PF16198 tRNA pseudouridylate synthase B C-terminal domain VB87_RS05485 PF00312 Ribosomal protein S15 VB87_RS05490 PF01138 3' exoribonuclease family, domain 1 VB87_RS05490 PF03725 3' exoribonuclease family, domain 2 VB87_RS05490 PF00575 S1 RNA binding domain VB87_RS05490 PF00013 KH domain VB87_RS05490 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain VB87_RS05495 PF00563 EAL domain VB87_RS05495 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS05495 PF03707 Bacterial signalling protein N terminal repeat VB87_RS05495 PF13188 PAS domain VB87_RS05520 PF00266 Aminotransferase class-V VB87_RS05525 PF01458 Uncharacterized protein family (UPF0051) VB87_RS05530 PF00005 ABC transporter VB87_RS05535 PF07007 Lysozyme inhibitor LprI VB87_RS05540 PF01458 Uncharacterized protein family (UPF0051) VB87_RS05570 PF02567 Phenazine biosynthesis-like protein VB87_RS05575 PF01842 ACT domain VB87_RS05575 PF00696 Amino acid kinase family VB87_RS05585 PF08245 Mur ligase middle domain VB87_RS05590 PF00348 Polyprenyl synthetase VB87_RS05595 PF00436 Single-strand binding protein family VB87_RS05610 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VB87_RS05610 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VB87_RS05615 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch VB87_RS05620 PF02233 NAD(P) transhydrogenase beta subunit VB87_RS05625 PF00171 Aldehyde dehydrogenase family VB87_RS05630 PF08240 Alcohol dehydrogenase GroES-like domain VB87_RS05630 PF00107 Zinc-binding dehydrogenase VB87_RS05640 PF00202 Aminotransferase class-III VB87_RS05655 PF16197 Ketoacyl-synthetase C-terminal extension VB87_RS05655 PF00975 Thioesterase domain VB87_RS05655 PF02801 Beta-ketoacyl synthase, C-terminal domain VB87_RS05655 PF00109 Beta-ketoacyl synthase, N-terminal domain VB87_RS05655 PF00550 Phosphopantetheine attachment site VB87_RS05655 PF00698 Acyl transferase domain VB87_RS05660 PF13193 AMP-binding enzyme C-terminal domain VB87_RS05660 PF00501 AMP-binding enzyme VB87_RS05660 PF00975 Thioesterase domain VB87_RS05660 PF00550 Phosphopantetheine attachment site VB87_RS05660 PF00668 Condensation domain VB87_RS05665 PF00668 Condensation domain VB87_RS05665 PF13193 AMP-binding enzyme C-terminal domain VB87_RS05665 PF00550 Phosphopantetheine attachment site VB87_RS05665 PF00975 Thioesterase domain VB87_RS05665 PF00501 AMP-binding enzyme VB87_RS05670 PF00550 Phosphopantetheine attachment site VB87_RS05670 PF00501 AMP-binding enzyme VB87_RS05670 PF00668 Condensation domain VB87_RS05670 PF13193 AMP-binding enzyme C-terminal domain VB87_RS05680 PF02797 Chalcone and stilbene synthases, C-terminal domain VB87_RS05680 PF00195 Chalcone and stilbene synthases, N-terminal domain VB87_RS05690 PF00378 Enoyl-CoA hydratase/isomerase VB87_RS05695 PF00155 Aminotransferase class I and II VB87_RS05700 PF00378 Enoyl-CoA hydratase/isomerase VB87_RS05705 PF00005 ABC transporter VB87_RS05705 PF00664 ABC transporter transmembrane region VB87_RS05710 PF03621 MbtH-like protein VB87_RS05715 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain VB87_RS05715 PF12706 Beta-lactamase superfamily domain VB87_RS05720 PF00854 POT family VB87_RS05725 PF03169 OPT oligopeptide transporter protein VB87_RS05730 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region VB87_RS05730 PF07676 WD40-like Beta Propeller Repeat VB87_RS05730 PF00326 Prolyl oligopeptidase family VB87_RS05745 PF03129 Anticodon binding domain VB87_RS05745 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VB87_RS05745 PF02824 TGS domain VB87_RS05745 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VB87_RS05750 PF05198 Translation initiation factor IF-3, N-terminal domain VB87_RS05750 PF00707 Translation initiation factor IF-3, C-terminal domain VB87_RS05755 PF01632 Ribosomal protein L35 VB87_RS05760 PF00453 Ribosomal protein L20 VB87_RS05765 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain VB87_RS05765 PF01409 tRNA synthetases class II core domain (F) VB87_RS05770 PF03483 B3/4 domain VB87_RS05770 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain VB87_RS05770 PF01588 Putative tRNA binding domain VB87_RS05770 PF03147 Ferredoxin-fold anticodon binding domain VB87_RS05770 PF03484 tRNA synthetase B5 domain VB87_RS05775 PF00216 Bacterial DNA-binding protein VB87_RS05780 PF13411 MerR HTH family regulatory protein VB87_RS05800 PF02780 Transketolase, C-terminal domain VB87_RS05800 PF13292 1-deoxy-D-xylulose-5-phosphate synthase VB87_RS05800 PF02779 Transketolase, pyrimidine binding domain VB87_RS05810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VB87_RS05810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VB87_RS05810 PF02770 Acyl-CoA dehydrogenase, middle domain VB87_RS05810 PF12806 Acetyl-CoA dehydrogenase C-terminal like VB87_RS05835 PF02601 Exonuclease VII, large subunit VB87_RS05835 PF13742 OB-fold nucleic acid binding domain VB87_RS05840 PF01256 Carbohydrate kinase VB87_RS05840 PF03853 YjeF-related protein N-terminus VB87_RS05850 PF01520 N-acetylmuramoyl-L-alanine amidase VB87_RS05850 PF11741 AMIN domain VB87_RS05855 PF01119 DNA mismatch repair protein, C-terminal domain VB87_RS05855 PF08676 MutL C terminal dimerisation domain VB87_RS05870 PF07879 PHB/PHA accumulation regulator DNA-binding domain VB87_RS05870 PF05233 PHB accumulation regulatory domain VB87_RS05875 PF00106 short chain dehydrogenase VB87_RS05880 PF00749 tRNA synthetases class I (E and Q), catalytic domain VB87_RS05885 PF01435 Peptidase family M48 VB87_RS05900 PF07152 YaeQ protein VB87_RS05905 PF00313 'Cold-shock' DNA-binding domain VB87_RS05910 PF02798 Glutathione S-transferase, N-terminal domain VB87_RS05910 PF00043 Glutathione S-transferase, C-terminal domain VB87_RS05920 PF02696 Uncharacterized ACR, YdiU/UPF0061 family VB87_RS05930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VB87_RS05930 PF00529 HlyD membrane-fusion protein of T1SS VB87_RS05935 PF00873 AcrB/AcrD/AcrF family VB87_RS05940 PF03880 DbpA RNA binding domain VB87_RS05940 PF00271 Helicase conserved C-terminal domain VB87_RS05940 PF00270 DEAD/DEAH box helicase VB87_RS05945 PF00005 ABC transporter VB87_RS05945 PF12848 ABC transporter VB87_RS05945 PF16326 ABC transporter C-terminal domain VB87_RS05960 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VB87_RS05960 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VB87_RS05970 PF14310 Fibronectin type III-like domain VB87_RS05970 PF00933 Glycosyl hydrolase family 3 N terminal domain VB87_RS05970 PF01915 Glycosyl hydrolase family 3 C-terminal domain VB87_RS06010 PF00255 Glutathione peroxidase VB87_RS06015 PF00175 Oxidoreductase NAD-binding domain VB87_RS06015 PF00970 Oxidoreductase FAD-binding domain VB87_RS06025 PF00005 ABC transporter VB87_RS06030 PF05681 Fumarate hydratase (Fumerase) VB87_RS06030 PF05683 Fumarase C-terminus VB87_RS06035 PF02253 Phospholipase A1 VB87_RS06045 PF00313 'Cold-shock' DNA-binding domain VB87_RS06060 PF00899 ThiF family VB87_RS06065 PF01026 TatD related DNase VB87_RS06080 PF00772 DnaB-like helicase N terminal domain VB87_RS06080 PF03796 DnaB-like helicase C terminal domain VB87_RS06085 PF03441 FAD binding domain of DNA photolyase VB87_RS06085 PF00875 DNA photolyase VB87_RS06090 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain VB87_RS06090 PF06974 Protein of unknown function (DUF1298) VB87_RS06095 PF05736 OprF membrane domain VB87_RS06095 PF00691 OmpA family VB87_RS06100 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS06110 PF03033 Glycosyltransferase family 28 N-terminal domain VB87_RS06110 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase VB87_RS06115 PF00668 Condensation domain VB87_RS06115 PF13193 AMP-binding enzyme C-terminal domain VB87_RS06115 PF00550 Phosphopantetheine attachment site VB87_RS06115 PF00975 Thioesterase domain VB87_RS06115 PF00501 AMP-binding enzyme VB87_RS06120 PF01751 Toprim domain VB87_RS06120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS06120 PF00986 DNA gyrase B subunit, carboxyl terminus VB87_RS06120 PF00204 DNA gyrase B VB87_RS06130 PF00117 Glutamine amidotransferase class-I VB87_RS06130 PF06418 CTP synthase N-terminus VB87_RS06135 PF00793 DAHP synthetase I family VB87_RS06140 PF03952 Enolase, N-terminal domain VB87_RS06140 PF00113 Enolase, C-terminal TIM barrel domain VB87_RS06145 PF04977 Septum formation initiator VB87_RS06150 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase VB87_RS06155 PF02542 YgbB family VB87_RS06160 PF01142 tRNA pseudouridine synthase D (TruD) VB87_RS06165 PF01713 Smr domain VB87_RS06170 PF01975 Survival protein SurE VB87_RS06180 PF09335 SNARE associated Golgi protein VB87_RS06185 PF01476 LysM domain VB87_RS06185 PF01551 Peptidase family M23 VB87_RS06190 PF04430 Protein of unknown function (DUF498/DUF598) VB87_RS06195 PF01985 CRS1 / YhbY (CRM) domain VB87_RS06200 PF01728 FtsJ-like methyltransferase VB87_RS06205 PF00004 ATPase family associated with various cellular activities (AAA) VB87_RS06205 PF01434 Peptidase family M41 VB87_RS06205 PF17862 AAA+ lid domain VB87_RS06205 PF06480 FtsH Extracellular VB87_RS06210 PF00809 Pterin binding enzyme VB87_RS06220 PF17209 Hfq protein VB87_RS06225 PF01926 50S ribosome-binding GTPase VB87_RS06225 PF13167 GTP-binding GTPase N-terminal VB87_RS06225 PF16360 GTP-binding GTPase Middle Region VB87_RS06230 PF02464 Competence-damaged protein VB87_RS06235 PF01726 LexA DNA binding domain VB87_RS06235 PF00717 Peptidase S24-like VB87_RS06240 PF00154 recA bacterial DNA recombination protein VB87_RS06245 PF02631 RecX family VB87_RS06250 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain VB87_RS06250 PF02272 DHHA1 domain VB87_RS06250 PF01411 tRNA synthetases class II (A) VB87_RS06255 PF02599 Global regulator protein family VB87_RS06275 PF02581 Thiamine monophosphate synthase VB87_RS06275 PF08543 Phosphomethylpyrimidine kinase VB87_RS06290 PF02562 PhoH-like protein VB87_RS06290 PF13638 PIN domain VB87_RS06295 PF00578 AhpC/TSA family VB87_RS06305 PF00701 Dihydrodipicolinate synthetase family VB87_RS06315 PF00037 4Fe-4S binding domain VB87_RS06315 PF11953 Domain of unknown function (DUF3470) VB87_RS06320 PF05035 2-keto-3-deoxy-galactonokinase VB87_RS06330 PF13378 Enolase C-terminal domain-like VB87_RS06330 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain VB87_RS06335 PF01081 KDPG and KHG aldolase VB87_RS06340 PF03466 LysR substrate binding domain VB87_RS06340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VB87_RS06355 PF01055 Glycosyl hydrolases family 31 VB87_RS06355 PF16338 Domain of unknown function (DUF4968) VB87_RS06355 PF17137 Domain of unknown function (DUF5110) VB87_RS06360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain VB87_RS06360 PF00370 FGGY family of carbohydrate kinases, N-terminal domain VB87_RS06370 PF00083 Sugar (and other) transporter VB87_RS06375 PF09286 Pro-kumamolisin, activation domain VB87_RS06375 PF00082 Subtilase family VB87_RS06380 PF01520 N-acetylmuramoyl-L-alanine amidase VB87_RS06385 PF02649 Type I GTP cyclohydrolase folE2 VB87_RS06395 PF01743 Poly A polymerase head domain VB87_RS06395 PF12626 Polymerase A arginine-rich C-terminus VB87_RS06395 PF12627 Probable RNA and SrmB- binding site of polymerase A VB87_RS06400 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) VB87_RS06405 PF02548 Ketopantoate hydroxymethyltransferase VB87_RS06410 PF02569 Pantoate-beta-alanine ligase VB87_RS06415 PF02261 Aspartate decarboxylase VB87_RS06420 PF00342 Phosphoglucose isomerase VB87_RS06425 PF00933 Glycosyl hydrolase family 3 N terminal domain VB87_RS06425 PF14310 Fibronectin type III-like domain VB87_RS06425 PF01915 Glycosyl hydrolase family 3 C-terminal domain VB87_RS06430 PF00474 Sodium:solute symporter family VB87_RS06435 PF03707 Bacterial signalling protein N terminal repeat VB87_RS06435 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS06435 PF00563 EAL domain VB87_RS06440 PF00072 Response regulator receiver domain VB87_RS06450 PF04551 GcpE protein VB87_RS06455 PF13361 UvrD-like helicase C-terminal domain VB87_RS06455 PF00580 UvrD/REP helicase N-terminal domain VB87_RS06465 PF01565 FAD binding domain VB87_RS06465 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain VB87_RS06470 PF01180 Dihydroorotate dehydrogenase VB87_RS06485 PF00171 Aldehyde dehydrogenase family VB87_RS06495 PF01527 Transposase VB87_RS06500 PF13276 HTH-like domain VB87_RS06500 PF13333 Integrase core domain VB87_RS06500 PF00665 Integrase core domain VB87_RS06535 PF00005 ABC transporter VB87_RS06535 PF02687 FtsX-like permease family VB87_RS06535 PF12704 MacB-like periplasmic core domain VB87_RS06565 PF13840 ACT domain VB87_RS06565 PF01842 ACT domain VB87_RS06565 PF03447 Homoserine dehydrogenase, NAD binding domain VB87_RS06565 PF00742 Homoserine dehydrogenase VB87_RS06565 PF00696 Amino acid kinase family VB87_RS06570 PF08544 GHMP kinases C terminal VB87_RS06570 PF00288 GHMP kinases N terminal domain VB87_RS06575 PF01609 Transposase DDE domain VB87_RS06580 PF13340 Putative transposase of IS4/5 family (DUF4096) VB87_RS06585 PF07519 Tannase and feruloyl esterase VB87_RS06590 PF14821 Threonine synthase N terminus VB87_RS06590 PF00291 Pyridoxal-phosphate dependent enzyme VB87_RS06600 PF03129 Anticodon binding domain VB87_RS06600 PF13393 Histidyl-tRNA synthetase VB87_RS06615 PF01634 ATP phosphoribosyltransferase VB87_RS06615 PF08029 HisG, C-terminal domain VB87_RS06620 PF00815 Histidinol dehydrogenase VB87_RS06625 PF00155 Aminotransferase class I and II VB87_RS06630 PF00475 Imidazoleglycerol-phosphate dehydratase VB87_RS06635 PF00117 Glutamine amidotransferase class-I VB87_RS06640 PF00977 Histidine biosynthesis protein VB87_RS06645 PF00977 Histidine biosynthesis protein VB87_RS06650 PF01502 Phosphoribosyl-AMP cyclohydrolase VB87_RS06650 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase VB87_RS06655 PF02562 PhoH-like protein VB87_RS06660 PF01938 TRAM domain VB87_RS06660 PF04055 Radical SAM superfamily VB87_RS06660 PF00919 Uncharacterized protein family UPF0004 VB87_RS06665 PF01464 Transglycosylase SLT domain VB87_RS06670 PF00355 Rieske [2Fe-2S] domain VB87_RS06670 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal VB87_RS06675 PF00032 Cytochrome b(C-terminal)/b6/petD VB87_RS06675 PF00033 Cytochrome b/b6/petB VB87_RS06680 PF02167 Cytochrome C1 family VB87_RS06685 PF00043 Glutathione S-transferase, C-terminal domain VB87_RS06685 PF02798 Glutathione S-transferase, N-terminal domain VB87_RS06690 PF04386 Stringent starvation protein B VB87_RS06700 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain VB87_RS06700 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain VB87_RS06710 PF00731 AIR carboxylase VB87_RS06715 PF02222 ATP-grasp domain VB87_RS06715 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain VB87_RS06720 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VB87_RS06720 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VB87_RS06725 PF00462 Glutaredoxin VB87_RS06730 PF00106 short chain dehydrogenase VB87_RS06735 PF01914 MarC family integral membrane protein VB87_RS06740 PF00593 TonB dependent receptor VB87_RS06745 PF03641 Possible lysine decarboxylase VB87_RS06745 PF11892 Domain of unknown function (DUF3412) VB87_RS06745 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases VB87_RS06750 PF06580 Histidine kinase VB87_RS06750 PF07694 5TMR of 5TMR-LYT VB87_RS06755 PF07963 Prokaryotic N-terminal methylation motif VB87_RS06755 PF00114 Pilin (bacterial filament) VB87_RS06775 PF05567 Neisseria PilC beta-propeller domain VB87_RS06780 PF07963 Prokaryotic N-terminal methylation motif VB87_RS06780 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor VB87_RS06800 PF00561 alpha/beta hydrolase fold VB87_RS06810 PF03918 Cytochrome C biogenesis protein VB87_RS06815 PF08534 Redoxin VB87_RS06820 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VB87_RS06820 PF01578 Cytochrome C assembly protein VB87_RS06830 PF01578 Cytochrome C assembly protein VB87_RS06835 PF03379 CcmB protein VB87_RS06840 PF00005 ABC transporter VB87_RS06845 PF00155 Aminotransferase class I and II VB87_RS06850 PF00795 Carbon-nitrogen hydrolase VB87_RS06860 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS06860 PF00989 PAS fold VB87_RS06860 PF00563 EAL domain VB87_RS06860 PF01590 GAF domain VB87_RS06865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS06865 PF09456 RcsC Alpha-Beta-Loop (ABL) VB87_RS06865 PF00072 Response regulator receiver domain VB87_RS06865 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS06870 PF00072 Response regulator receiver domain VB87_RS06870 PF00196 Bacterial regulatory proteins, luxR family VB87_RS06875 PF05662 Coiled stalk of trimeric autotransporter adhesin VB87_RS06875 PF05658 Head domain of trimeric autotransporter adhesin VB87_RS06875 PF03895 YadA-like membrane anchor domain VB87_RS06875 PF13018 Extended Signal Peptide of Type V secretion system VB87_RS06880 PF02611 CDP-diacylglycerol pyrophosphatase VB87_RS06890 PF01479 S4 domain VB87_RS06890 PF00849 RNA pseudouridylate synthase VB87_RS06895 PF04079 Segregation and condensation complex subunit ScpB VB87_RS06900 PF02616 Segregation and condensation protein ScpA VB87_RS06905 PF03795 YCII-related domain VB87_RS06925 PF00528 Binding-protein-dependent transport system inner membrane component VB87_RS06930 PF00528 Binding-protein-dependent transport system inner membrane component VB87_RS06950 PF03079 ARD/ARD' family VB87_RS06955 PF00596 Class II Aldolase and Adducin N-terminal domain VB87_RS06960 PF13520 Amino acid permease VB87_RS06965 PF13520 Amino acid permease VB87_RS06975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain VB87_RS06975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain VB87_RS06980 PF02913 FAD linked oxidases, C-terminal domain VB87_RS06980 PF01565 FAD binding domain VB87_RS06995 PF01132 Elongation factor P (EF-P) OB domain VB87_RS06995 PF09285 Elongation factor P, C-terminal VB87_RS06995 PF08207 Elongation factor P (EF-P) KOW-like domain VB87_RS07000 PF00106 short chain dehydrogenase VB87_RS07005 PF00682 HMGL-like VB87_RS07010 PF00378 Enoyl-CoA hydratase/isomerase VB87_RS07020 PF02421 Ferrous iron transport protein B VB87_RS07020 PF07670 Nucleoside recognition VB87_RS07020 PF07664 Ferrous iron transport protein B C terminus VB87_RS07030 PF05173 Dihydrodipicolinate reductase, C-terminus VB87_RS07030 PF01113 Dihydrodipicolinate reductase, N-terminus VB87_RS07035 PF00117 Glutamine amidotransferase class-I VB87_RS07035 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain VB87_RS07040 PF02142 MGS-like domain VB87_RS07040 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain VB87_RS07040 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain VB87_RS07045 PF01272 Transcription elongation factor, GreA/GreB, C-term VB87_RS07045 PF03449 Transcription elongation factor, N-terminal VB87_RS07055 PF02272 DHHA1 domain VB87_RS07055 PF17768 RecJ OB domain VB87_RS07055 PF01368 DHH family VB87_RS07060 PF00472 RF-1 domain VB87_RS07060 PF03462 PCRF domain VB87_RS07065 PF00152 tRNA synthetases class II (D, K and N) VB87_RS07065 PF01336 OB-fold nucleic acid binding domain VB87_RS07070 PF00072 Response regulator receiver domain VB87_RS07075 PF01627 Hpt domain VB87_RS07075 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS07075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS07075 PF00072 Response regulator receiver domain VB87_RS07080 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VB87_RS07080 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VB87_RS07080 PF00378 Enoyl-CoA hydratase/isomerase VB87_RS07085 PF13193 AMP-binding enzyme C-terminal domain VB87_RS07085 PF00501 AMP-binding enzyme VB87_RS07090 PF00694 Aconitase C-terminal domain VB87_RS07090 PF00330 Aconitase family (aconitate hydratase) VB87_RS07105 PF11791 Aconitate B N-terminal domain VB87_RS07105 PF06434 Aconitate hydratase 2 N-terminus VB87_RS07105 PF00330 Aconitase family (aconitate hydratase) VB87_RS07110 PF03707 Bacterial signalling protein N terminal repeat VB87_RS07110 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS07110 PF00563 EAL domain VB87_RS07115 PF01339 CheB methylesterase VB87_RS07115 PF00072 Response regulator receiver domain VB87_RS07120 PF03975 CheD chemotactic sensory transduction VB87_RS07125 PF01739 CheR methyltransferase, SAM binding domain VB87_RS07125 PF03705 CheR methyltransferase, all-alpha domain VB87_RS07130 PF00672 HAMP domain VB87_RS07130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS07130 PF02203 Tar ligand binding domain homologue VB87_RS07140 PF01584 CheW-like domain VB87_RS07145 PF07317 Flagellar regulator YcgR VB87_RS07145 PF07238 PilZ domain VB87_RS07150 PF00672 HAMP domain VB87_RS07150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS07150 PF02203 Tar ligand binding domain homologue VB87_RS07155 PF00672 HAMP domain VB87_RS07155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS07155 PF02203 Tar ligand binding domain homologue VB87_RS07165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS07165 PF02203 Tar ligand binding domain homologue VB87_RS07165 PF00672 HAMP domain VB87_RS07170 PF02203 Tar ligand binding domain homologue VB87_RS07170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS07170 PF00672 HAMP domain VB87_RS07175 PF02895 Signal transducing histidine kinase, homodimeric domain VB87_RS07175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS07175 PF09078 CheY binding VB87_RS07175 PF01584 CheW-like domain VB87_RS07175 PF01627 Hpt domain VB87_RS07180 PF00072 Response regulator receiver domain VB87_RS07190 PF01584 CheW-like domain VB87_RS07195 PF13614 AAA domain VB87_RS07200 PF00691 OmpA family VB87_RS07200 PF13677 Membrane MotB of proton-channel complex MotA/MotB VB87_RS07205 PF01618 MotA/TolQ/ExbB proton channel family VB87_RS07210 PF01627 Hpt domain VB87_RS07210 PF01584 CheW-like domain VB87_RS07210 PF02895 Signal transducing histidine kinase, homodimeric domain VB87_RS07210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS07210 PF00072 Response regulator receiver domain VB87_RS07215 PF04344 Chemotaxis phosphatase, CheZ VB87_RS07220 PF00072 Response regulator receiver domain VB87_RS07225 PF04545 Sigma-70, region 4 VB87_RS07225 PF04539 Sigma-70 region 3 VB87_RS07225 PF04542 Sigma-70 region 2 VB87_RS07230 PF10609 NUBPL iron-transfer P-loop NTPase VB87_RS07235 PF00448 SRP54-type protein, GTPase domain VB87_RS07240 PF00771 FHIPEP family VB87_RS07245 PF01312 FlhB HrpN YscU SpaS Family VB87_RS07250 PF01311 Bacterial export proteins, family 1 VB87_RS07255 PF01313 Bacterial export proteins, family 3 VB87_RS07260 PF00813 FliP family VB87_RS07265 PF04347 Flagellar biosynthesis protein, FliO VB87_RS07270 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VB87_RS07275 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term VB87_RS07275 PF02154 Flagellar motor switch protein FliM VB87_RS07295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VB87_RS07295 PF18269 T3SS EscN ATPase C-terminal domain VB87_RS07305 PF01706 FliG C-terminal domain VB87_RS07305 PF14841 FliG middle domain VB87_RS07305 PF14842 FliG N-terminal domain VB87_RS07310 PF08345 Flagellar M-ring protein C-terminal VB87_RS07310 PF01514 Secretory protein of YscJ/FliF family VB87_RS07315 PF02049 Flagellar hook-basal body complex protein FliE VB87_RS07350 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VB87_RS07350 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VB87_RS07360 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family VB87_RS07365 PF02954 Bacterial regulatory protein, Fis family VB87_RS07365 PF00158 Sigma-54 interaction domain VB87_RS07365 PF06490 Flagellar regulatory protein FleQ VB87_RS07370 PF00072 Response regulator receiver domain VB87_RS07370 PF01339 CheB methylesterase VB87_RS07375 PF00309 Sigma-54 factor, Activator interacting domain (AID) VB87_RS07375 PF04963 Sigma-54 factor, core binding domain VB87_RS07375 PF04552 Sigma-54, DNA binding domain VB87_RS07380 PF00196 Bacterial regulatory proteins, luxR family VB87_RS07380 PF00072 Response regulator receiver domain VB87_RS07395 PF02561 Flagellar protein FliS VB87_RS07405 PF00669 Bacterial flagellin N-terminal helical region VB87_RS07405 PF00700 Bacterial flagellin C-terminal helical region VB87_RS07415 PF00460 Flagella basal body rod protein VB87_RS07415 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VB87_RS07420 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase VB87_RS07420 PF10135 Rod binding protein VB87_RS07425 PF02119 Flagellar P-ring protein VB87_RS07430 PF02107 Flagellar L-ring protein VB87_RS07435 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VB87_RS07435 PF00460 Flagella basal body rod protein VB87_RS07440 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VB87_RS07440 PF00460 Flagella basal body rod protein VB87_RS07445 PF07559 Flagellar basal body protein FlaE VB87_RS07445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VB87_RS07445 PF00460 Flagella basal body rod protein VB87_RS07450 PF03963 Flagellar hook capping protein - N-terminal region VB87_RS07450 PF13861 FlgD Tudor-like domain VB87_RS07450 PF13860 FlgD Ig-like domain VB87_RS07455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal VB87_RS07455 PF00460 Flagella basal body rod protein VB87_RS07465 PF00072 Response regulator receiver domain VB87_RS07465 PF01584 CheW-like domain VB87_RS07485 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS07485 PF00072 Response regulator receiver domain VB87_RS07485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS07485 PF08448 PAS fold VB87_RS07485 PF13188 PAS domain VB87_RS07490 PF00563 EAL domain VB87_RS07490 PF03707 Bacterial signalling protein N terminal repeat VB87_RS07490 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS07495 PF07730 Histidine kinase VB87_RS07495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS07500 PF00563 EAL domain VB87_RS07500 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS07500 PF03707 Bacterial signalling protein N terminal repeat VB87_RS07510 PF00005 ABC transporter VB87_RS07520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS07520 PF17200 Single Cache domain 2 VB87_RS07520 PF00672 HAMP domain VB87_RS07525 PF04356 Protein of unknown function (DUF489) VB87_RS07535 PF00293 NUDIX domain VB87_RS07540 PF02617 ATP-dependent Clp protease adaptor protein ClpS VB87_RS07545 PF10431 C-terminal, D2-small domain, of ClpB protein VB87_RS07545 PF00004 ATPase family associated with various cellular activities (AAA) VB87_RS07545 PF07724 AAA domain (Cdc48 subfamily) VB87_RS07545 PF17871 AAA lid domain VB87_RS07545 PF02861 Clp amino terminal domain, pathogenicity island component VB87_RS07550 PF01176 Translation initiation factor 1A / IF-1 VB87_RS07555 PF03588 Leucyl/phenylalanyl-tRNA protein transferase VB87_RS07565 PF07992 Pyridine nucleotide-disulphide oxidoreductase VB87_RS07570 PF09397 Ftsk gamma domain VB87_RS07570 PF01580 FtsK/SpoIIIE family VB87_RS07570 PF13491 4TM region of DNA translocase FtsK/SpoIIIE VB87_RS07570 PF17854 FtsK alpha domain VB87_RS07580 PF03548 Outer membrane lipoprotein carrier protein LolA VB87_RS07585 PF01545 Cation efflux family VB87_RS07590 PF12002 MgsA AAA+ ATPase C terminal VB87_RS07590 PF00004 ATPase family associated with various cellular activities (AAA) VB87_RS07590 PF16193 AAA C-terminal domain VB87_RS07595 PF00654 Voltage gated chloride channel VB87_RS07605 PF03918 Cytochrome C biogenesis protein VB87_RS07610 PF08534 Redoxin VB87_RS07615 PF01578 Cytochrome C assembly protein VB87_RS07615 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal VB87_RS07620 PF03100 CcmE VB87_RS07630 PF01578 Cytochrome C assembly protein VB87_RS07635 PF00082 Subtilase family VB87_RS07645 PF08281 Sigma-70, region 4 VB87_RS07645 PF04542 Sigma-70 region 2 VB87_RS07655 PF00034 Cytochrome c VB87_RS07665 PF01292 Prokaryotic cytochrome b561 VB87_RS07670 PF01527 Transposase VB87_RS07685 PF01527 Transposase VB87_RS07690 PF13333 Integrase core domain VB87_RS07690 PF13276 HTH-like domain VB87_RS07690 PF00665 Integrase core domain VB87_RS07710 PF06511 Type III secretion systems tip complex components VB87_RS07725 PF01464 Transglycosylase SLT domain VB87_RS07745 PF01514 Secretory protein of YscJ/FliF family VB87_RS07755 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF VB87_RS07765 PF12833 Helix-turn-helix domain VB87_RS07770 PF03958 Bacterial type II/III secretion system short domain VB87_RS07770 PF00263 Bacterial type II and III secretion system protein VB87_RS07775 PF07201 HrpJ-like domain VB87_RS07780 PF00771 FHIPEP family VB87_RS07790 PF18269 T3SS EscN ATPase C-terminal domain VB87_RS07790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VB87_RS07790 PF02874 ATP synthase alpha/beta family, beta-barrel domain VB87_RS07805 PF00813 FliP family VB87_RS07810 PF01313 Bacterial export proteins, family 3 VB87_RS07815 PF01311 Bacterial export proteins, family 1 VB87_RS07820 PF01312 FlhB HrpN YscU SpaS Family VB87_RS07825 PF07720 Tetratricopeptide repeat VB87_RS07860 PF01527 Transposase VB87_RS07865 PF02543 Carbamoyltransferase N-terminus VB87_RS07865 PF16861 Carbamoyltransferase C-terminus VB87_RS07870 PF07690 Major Facilitator Superfamily VB87_RS07895 PF04715 Anthranilate synthase component I, N terminal region VB87_RS07895 PF00117 Glutamine amidotransferase class-I VB87_RS07895 PF00425 chorismate binding enzyme VB87_RS07905 PF01063 Amino-transferase class IV VB87_RS07915 PF04345 Chorismate lyase VB87_RS07920 PF00550 Phosphopantetheine attachment site VB87_RS07920 PF00975 Thioesterase domain VB87_RS07920 PF00501 AMP-binding enzyme VB87_RS07920 PF00668 Condensation domain VB87_RS07920 PF13193 AMP-binding enzyme C-terminal domain VB87_RS07925 PF02668 Taurine catabolism dioxygenase TauD, TfdA family VB87_RS07930 PF00501 AMP-binding enzyme VB87_RS07930 PF13193 AMP-binding enzyme C-terminal domain VB87_RS07935 PF04072 Leucine carboxyl methyltransferase VB87_RS07940 PF01695 IstB-like ATP binding protein VB87_RS07945 PF02801 Beta-ketoacyl synthase, C-terminal domain VB87_RS07945 PF00550 Phosphopantetheine attachment site VB87_RS07945 PF08659 KR domain VB87_RS07945 PF08242 Methyltransferase domain VB87_RS07945 PF00109 Beta-ketoacyl synthase, N-terminal domain VB87_RS07945 PF16197 Ketoacyl-synthetase C-terminal extension VB87_RS07945 PF14765 Polyketide synthase dehydratase VB87_RS07955 PF03061 Thioesterase superfamily VB87_RS07960 PF00550 Phosphopantetheine attachment site VB87_RS07960 PF00668 Condensation domain VB87_RS07960 PF00975 Thioesterase domain VB87_RS07960 PF00501 AMP-binding enzyme VB87_RS07960 PF13193 AMP-binding enzyme C-terminal domain VB87_RS07960 PF13193 AMP-binding enzyme C-terminal domain VB87_RS07960 PF00668 Condensation domain VB87_RS07960 PF00550 Phosphopantetheine attachment site VB87_RS07960 PF00975 Thioesterase domain VB87_RS07960 PF00501 AMP-binding enzyme VB87_RS08035 PF01527 Transposase VB87_RS08040 PF00550 Phosphopantetheine attachment site VB87_RS08040 PF00668 Condensation domain VB87_RS08040 PF00975 Thioesterase domain VB87_RS08040 PF13193 AMP-binding enzyme C-terminal domain VB87_RS08040 PF00501 AMP-binding enzyme VB87_RS08045 PF00550 Phosphopantetheine attachment site VB87_RS08045 PF13193 AMP-binding enzyme C-terminal domain VB87_RS08045 PF00501 AMP-binding enzyme VB87_RS08045 PF00975 Thioesterase domain VB87_RS08045 PF00668 Condensation domain VB87_RS08060 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS08060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS08060 PF00672 HAMP domain VB87_RS08065 PF00486 Transcriptional regulatory protein, C terminal VB87_RS08065 PF00072 Response regulator receiver domain VB87_RS08070 PF02321 Outer membrane efflux protein VB87_RS08075 PF06629 MltA-interacting protein MipA VB87_RS08080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VB87_RS08085 PF00873 AcrB/AcrD/AcrF family VB87_RS08115 PF00270 DEAD/DEAH box helicase VB87_RS08115 PF13749 Putative ATP-dependent DNA helicase recG C-terminal VB87_RS08115 PF17191 RecG wedge domain VB87_RS08125 PF00239 Resolvase, N terminal domain VB87_RS08125 PF02796 Helix-turn-helix domain of resolvase VB87_RS08150 PF17273 Family of unknown function (DUF5338) VB87_RS08200 PF13356 Arm DNA-binding domain VB87_RS08200 PF00589 Phage integrase family VB87_RS08205 PF02540 NAD synthase VB87_RS08205 PF00958 GMP synthase C terminal domain VB87_RS08205 PF00117 Glutamine amidotransferase class-I VB87_RS08210 PF00571 CBS domain VB87_RS08210 PF00478 IMP dehydrogenase / GMP reductase domain VB87_RS08215 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain VB87_RS08215 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain VB87_RS08225 PF00899 ThiF family VB87_RS08230 PF03453 MoeA N-terminal region (domain I and II) VB87_RS08230 PF03454 MoeA C-terminal region (domain IV) VB87_RS08230 PF00994 Probable molybdopterin binding domain VB87_RS08235 PF12804 MobA-like NTP transferase domain VB87_RS08240 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal VB87_RS08240 PF01926 50S ribosome-binding GTPase VB87_RS08245 PF01011 PQQ enzyme repeat VB87_RS08245 PF13360 PQQ-like domain VB87_RS08255 PF13464 Domain of unknown function (DUF4115) VB87_RS08265 PF04055 Radical SAM superfamily VB87_RS08270 PF00334 Nucleoside diphosphate kinase VB87_RS08280 PF00378 Enoyl-CoA hydratase/isomerase VB87_RS08280 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VB87_RS08280 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VB87_RS08285 PF00108 Thiolase, N-terminal domain VB87_RS08285 PF02803 Thiolase, C-terminal domain VB87_RS08290 PF00483 Nucleotidyl transferase VB87_RS08295 PF02719 Polysaccharide biosynthesis protein VB87_RS08300 PF00953 Glycosyl transferase family 4 VB87_RS08305 PF18073 Rubredoxin metal binding domain VB87_RS08315 PF00216 Bacterial DNA-binding protein VB87_RS08320 PF00575 S1 RNA binding domain VB87_RS08325 PF02224 Cytidylate kinase VB87_RS08330 PF00444 Ribosomal protein L36 VB87_RS08340 PF04371 Porphyromonas-type peptidyl-arginine deiminase VB87_RS08345 PF00795 Carbon-nitrogen hydrolase VB87_RS08360 PF00034 Cytochrome c VB87_RS08370 PF01106 NifU-like domain VB87_RS08375 PF01329 Pterin 4 alpha carbinolamine dehydratase VB87_RS08385 PF11737 Protein of unknown function (DUF3300) VB87_RS08390 PF00849 RNA pseudouridylate synthase VB87_RS08390 PF01479 S4 domain VB87_RS08395 PF00575 S1 RNA binding domain VB87_RS08395 PF10150 Ribonuclease E/G family VB87_RS08395 PF12111 Polyribonucleotide phosphorylase C terminal VB87_RS08400 PF00196 Bacterial regulatory proteins, luxR family VB87_RS08400 PF00072 Response regulator receiver domain VB87_RS08425 PF01527 Transposase VB87_RS08430 PF00665 Integrase core domain VB87_RS08430 PF13276 HTH-like domain VB87_RS08430 PF13333 Integrase core domain VB87_RS08490 PF00072 Response regulator receiver domain VB87_RS08490 PF01627 Hpt domain VB87_RS08490 PF00497 Bacterial extracellular solute-binding proteins, family 3 VB87_RS08490 PF00989 PAS fold VB87_RS08490 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS08490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS08495 PF17674 HHH domain VB87_RS08495 PF16921 Tex protein YqgF-like domain VB87_RS08495 PF09371 Tex-like protein N-terminal domain VB87_RS08495 PF00575 S1 RNA binding domain VB87_RS08500 PF13426 PAS domain VB87_RS08500 PF00072 Response regulator receiver domain VB87_RS08500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS08510 PF00561 alpha/beta hydrolase fold VB87_RS08520 PF01066 CDP-alcohol phosphatidyltransferase VB87_RS08540 PF03618 Kinase/pyrophosphorylase VB87_RS08545 PF00391 PEP-utilising enzyme, mobile domain VB87_RS08545 PF02896 PEP-utilising enzyme, TIM barrel domain VB87_RS08545 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain VB87_RS08550 PF05552 Conserved TM helix VB87_RS08550 PF00924 Mechanosensitive ion channel VB87_RS08555 PF00929 Exonuclease VB87_RS08560 PF14437 MafB19-like deaminase VB87_RS08565 PF02742 Iron dependent repressor, metal binding and dimerisation domain VB87_RS08565 PF01325 Iron dependent repressor, N-terminal DNA binding domain VB87_RS08570 PF01566 Natural resistance-associated macrophage protein VB87_RS08575 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain VB87_RS08575 PF02777 Iron/manganese superoxide dismutases, C-terminal domain VB87_RS08585 PF04102 SlyX VB87_RS08590 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VB87_RS08590 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VB87_RS08590 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VB87_RS08595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VB87_RS08595 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VB87_RS08600 PF00255 Glutathione peroxidase VB87_RS08605 PF00392 Bacterial regulatory proteins, gntR family VB87_RS08610 PF00005 ABC transporter VB87_RS08635 PF00206 Lyase VB87_RS08635 PF10415 Fumarase C C-terminus VB87_RS08640 PF00206 Lyase VB87_RS08640 PF08328 Adenylosuccinate lyase C-terminal VB87_RS08645 PF08007 Cupin superfamily protein VB87_RS08655 PF16078 2-oxoglutarate dehydrogenase N-terminus VB87_RS08655 PF02779 Transketolase, pyrimidine binding domain VB87_RS08655 PF16870 2-oxoglutarate dehydrogenase C-terminal VB87_RS08655 PF00676 Dehydrogenase E1 component VB87_RS08660 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VB87_RS08660 PF02817 e3 binding domain VB87_RS08660 PF00364 Biotin-requiring enzyme VB87_RS08665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VB87_RS08665 PF07992 Pyridine nucleotide-disulphide oxidoreductase VB87_RS08670 PF03641 Possible lysine decarboxylase VB87_RS08675 PF03707 Bacterial signalling protein N terminal repeat VB87_RS08675 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS08675 PF00563 EAL domain VB87_RS08680 PF01205 Uncharacterized protein family UPF0029 VB87_RS08680 PF09186 Domain of unknown function (DUF1949) VB87_RS08685 PF00005 ABC transporter VB87_RS08685 PF00664 ABC transporter transmembrane region VB87_RS08690 PF01817 Chorismate mutase type II VB87_RS08690 PF02153 Prephenate dehydrogenase VB87_RS08695 PF00226 DnaJ domain VB87_RS08695 PF00684 DnaJ central domain VB87_RS08695 PF01556 DnaJ C terminal domain VB87_RS08700 PF00012 Hsp70 protein VB87_RS08705 PF01025 GrpE VB87_RS08710 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding VB87_RS08710 PF01628 HrcA protein C terminal domain VB87_RS08715 PF02463 RecF/RecN/SMC N terminal domain VB87_RS08720 PF01475 Ferric uptake regulator family VB87_RS08725 PF04355 SmpA / OmlA family VB87_RS08730 PF03658 RnfH family Ubiquitin VB87_RS08740 PF01668 SmpB protein VB87_RS08745 PF00571 CBS domain VB87_RS08745 PF03471 Transporter associated domain VB87_RS08745 PF01595 Cyclin M transmembrane N-terminal domain VB87_RS08760 PF17773 UPF0176 acylphosphatase like domain VB87_RS08760 PF00581 Rhodanese-like domain VB87_RS08770 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VB87_RS08780 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS08780 PF08447 PAS fold VB87_RS08780 PF00563 EAL domain VB87_RS08780 PF08448 PAS fold VB87_RS08785 PF01645 Conserved region in glutamate synthase VB87_RS08790 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain VB87_RS08790 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain VB87_RS08790 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain VB87_RS08810 PF03466 LysR substrate binding domain VB87_RS08810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VB87_RS08815 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VB87_RS08815 PF02403 Seryl-tRNA synthetase N-terminal domain VB87_RS08820 PF03544 Gram-negative bacterial TonB protein C-terminal VB87_RS08825 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VB87_RS08830 PF00800 Prephenate dehydratase VB87_RS08830 PF01842 ACT domain VB87_RS08830 PF01817 Chorismate mutase type II VB87_RS08835 PF00266 Aminotransferase class-V VB87_RS08840 PF00174 Oxidoreductase molybdopterin binding domain VB87_RS08845 PF01794 Ferric reductase like transmembrane component VB87_RS08880 PF00106 short chain dehydrogenase VB87_RS08885 PF00392 Bacterial regulatory proteins, gntR family VB87_RS08885 PF07702 UTRA domain VB87_RS08895 PF07969 Amidohydrolase family VB87_RS08900 PF00221 Aromatic amino acid lyase VB87_RS08910 PF01175 Urocanase Rossmann-like domain VB87_RS08910 PF17391 Urocanase N-terminal domain VB87_RS08910 PF17392 Urocanase C-terminal domain VB87_RS08925 PF00440 Bacterial regulatory proteins, tetR family VB87_RS08925 PF08360 QacR-like protein, C-terminal region VB87_RS08940 PF00521 DNA gyrase/topoisomerase IV, subunit A VB87_RS08940 PF03989 DNA gyrase C-terminal domain, beta-propeller VB87_RS08945 PF01008 Initiation factor 2 subunit family VB87_RS08955 PF00152 tRNA synthetases class II (D, K and N) VB87_RS08960 PF12826 Helix-hairpin-helix motif VB87_RS08960 PF03120 NAD-dependent DNA ligase OB-fold domain VB87_RS08960 PF03119 NAD-dependent DNA ligase C4 zinc finger domain VB87_RS08960 PF00533 BRCA1 C Terminus (BRCT) domain VB87_RS08960 PF01653 NAD-dependent DNA ligase adenylation domain VB87_RS08965 PF00155 Aminotransferase class I and II VB87_RS08970 PF04354 ZipA, C-terminal FtsZ-binding domain VB87_RS08975 PF02463 RecF/RecN/SMC N terminal domain VB87_RS08980 PF03948 Ribosomal protein L9, C-terminal domain VB87_RS08980 PF01281 Ribosomal protein L9, N-terminal domain VB87_RS08985 PF01084 Ribosomal protein S18 VB87_RS08990 PF01250 Ribosomal protein S6 VB87_RS09000 PF01521 Iron-sulphur cluster biosynthesis VB87_RS09005 PF00152 tRNA synthetases class II (D, K and N) VB87_RS09005 PF01336 OB-fold nucleic acid binding domain VB87_RS09025 PF00072 Response regulator receiver domain VB87_RS09025 PF00196 Bacterial regulatory proteins, luxR family VB87_RS09070 PF00484 Carbonic anhydrase VB87_RS09075 PF06052 3-hydroxyanthranilic acid dioxygenase VB87_RS09085 PF00266 Aminotransferase class-V VB87_RS09090 PF01494 FAD binding domain VB87_RS09095 PF08411 Exonuclease C-terminal VB87_RS09095 PF00929 Exonuclease VB87_RS09115 PF01513 ATP-NAD kinase VB87_RS09120 PF05088 Bacterial NAD-glutamate dehydrogenase VB87_RS09125 PF00529 HlyD membrane-fusion protein of T1SS VB87_RS09125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VB87_RS09130 PF00873 AcrB/AcrD/AcrF family VB87_RS09135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VB87_RS09135 PF02770 Acyl-CoA dehydrogenase, middle domain VB87_RS09135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VB87_RS09140 PF01209 ubiE/COQ5 methyltransferase family VB87_RS09145 PF02574 Homocysteine S-methyltransferase VB87_RS09145 PF00809 Pterin binding enzyme VB87_RS09150 PF02607 B12 binding domain VB87_RS09150 PF02965 Vitamin B12 dependent methionine synthase, activation domain VB87_RS09150 PF00809 Pterin binding enzyme VB87_RS09150 PF02574 Homocysteine S-methyltransferase VB87_RS09150 PF02310 B12 binding domain VB87_RS09155 PF00072 Response regulator receiver domain VB87_RS09155 PF00486 Transcriptional regulatory protein, C terminal VB87_RS09160 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS09160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS09175 PF00005 ABC transporter VB87_RS09220 PF02801 Beta-ketoacyl synthase, C-terminal domain VB87_RS09220 PF00109 Beta-ketoacyl synthase, N-terminal domain VB87_RS09225 PF00202 Aminotransferase class-III VB87_RS09260 PF03412 Peptidase C39 family VB87_RS09260 PF00005 ABC transporter VB87_RS09260 PF00664 ABC transporter transmembrane region VB87_RS09265 PF13533 Biotin-lipoyl like VB87_RS09280 PF13087 AAA domain VB87_RS09280 PF13195 Protein of unknown function (DUF4011) VB87_RS09280 PF13086 AAA domain VB87_RS09325 PF00589 Phage integrase family VB87_RS09325 PF13356 Arm DNA-binding domain VB87_RS09345 PF01066 CDP-alcohol phosphatidyltransferase VB87_RS09350 PF08459 UvrC Helix-hairpin-helix N-terminal VB87_RS09350 PF02151 UvrB/uvrC motif VB87_RS09350 PF01541 GIY-YIG catalytic domain VB87_RS09360 PF01451 Low molecular weight phosphotyrosine protein phosphatase VB87_RS09365 PF02348 Cytidylyltransferase VB87_RS09370 PF02606 Tetraacyldisaccharide-1-P 4'-kinase VB87_RS09375 PF00005 ABC transporter VB87_RS09375 PF00664 ABC transporter transmembrane region VB87_RS09380 PF02472 Biopolymer transport protein ExbD/TolR VB87_RS09385 PF01618 MotA/TolQ/ExbB proton channel family VB87_RS09390 PF00753 Metallo-beta-lactamase superfamily VB87_RS09390 PF03772 Competence protein VB87_RS09395 PF00005 ABC transporter VB87_RS09400 PF02687 FtsX-like permease family VB87_RS09400 PF12704 MacB-like periplasmic core domain VB87_RS09410 PF03937 Flavinator of succinate dehydrogenase VB87_RS09415 PF13085 2Fe-2S iron-sulfur cluster binding domain VB87_RS09425 PF00890 FAD binding domain VB87_RS09425 PF02910 Fumarate reductase flavoprotein C-term VB87_RS09430 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VB87_RS09435 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit VB87_RS09440 PF01571 Aminomethyltransferase folate-binding domain VB87_RS09445 PF17912 MalK OB fold domain VB87_RS09445 PF00005 ABC transporter VB87_RS09450 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain VB87_RS09450 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain VB87_RS09455 PF02685 Glucokinase VB87_RS09460 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase VB87_RS09465 PF00920 Dehydratase family VB87_RS09470 PF01081 KDPG and KHG aldolase VB87_RS09475 PF03135 CagE, TrbE, VirB family, component of type IV transporter system VB87_RS09490 PF00437 Type II/IV secretion system protein VB87_RS09495 PF03743 Bacterial conjugation TrbI-like protein VB87_RS09505 PF04335 VirB8 protein VB87_RS09525 PF00975 Thioesterase domain VB87_RS09525 PF00501 AMP-binding enzyme VB87_RS09525 PF13193 AMP-binding enzyme C-terminal domain VB87_RS09525 PF00668 Condensation domain VB87_RS09525 PF00550 Phosphopantetheine attachment site VB87_RS09545 PF01527 Transposase VB87_RS09610 PF12344 Ultra-violet resistance protein B VB87_RS09610 PF02151 UvrB/uvrC motif VB87_RS09610 PF04851 Type III restriction enzyme, res subunit VB87_RS09610 PF00271 Helicase conserved C-terminal domain VB87_RS09610 PF17757 UvrB interaction domain VB87_RS09615 PF05860 haemagglutination activity domain VB87_RS09615 PF13018 Extended Signal Peptide of Type V secretion system VB87_RS09615 PF05594 Haemagluttinin repeat VB87_RS09615 PF13332 Hemagglutinin repeat VB87_RS09615 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain VB87_RS09620 PF01527 Transposase VB87_RS09625 PF13276 HTH-like domain VB87_RS09625 PF13683 Integrase core domain VB87_RS09645 PF01527 Transposase VB87_RS09650 PF00175 Oxidoreductase NAD-binding domain VB87_RS09650 PF00042 Globin VB87_RS09650 PF00970 Oxidoreductase FAD-binding domain VB87_RS09655 PF13333 Integrase core domain VB87_RS09655 PF00665 Integrase core domain VB87_RS09655 PF13276 HTH-like domain VB87_RS09660 PF01527 Transposase VB87_RS09665 PF00158 Sigma-54 interaction domain VB87_RS09665 PF02954 Bacterial regulatory protein, Fis family VB87_RS09675 PF01527 Transposase VB87_RS09680 PF13018 Extended Signal Peptide of Type V secretion system VB87_RS09680 PF05662 Coiled stalk of trimeric autotransporter adhesin VB87_RS09680 PF05658 Head domain of trimeric autotransporter adhesin VB87_RS09680 PF05658 Head domain of trimeric autotransporter adhesin VB87_RS09680 PF03895 YadA-like membrane anchor domain VB87_RS09680 PF13018 Extended Signal Peptide of Type V secretion system VB87_RS09680 PF05662 Coiled stalk of trimeric autotransporter adhesin VB87_RS09680 PF03895 YadA-like membrane anchor domain VB87_RS09685 PF02129 X-Pro dipeptidyl-peptidase (S15 family) VB87_RS09685 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain VB87_RS09690 PF00171 Aldehyde dehydrogenase family VB87_RS09695 PF00696 Amino acid kinase family VB87_RS09695 PF01472 PUA domain VB87_RS09705 PF00206 Lyase VB87_RS09710 PF01118 Semialdehyde dehydrogenase, NAD binding domain VB87_RS09720 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase VB87_RS09720 PF00696 Amino acid kinase family VB87_RS09725 PF07687 Peptidase dimerisation domain VB87_RS09725 PF01546 Peptidase family M20/M25/M40 VB87_RS09735 PF00764 Arginosuccinate synthase VB87_RS09740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VB87_RS09740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VB87_RS09750 PF09190 DALR domain VB87_RS09750 PF01406 tRNA synthetases class I (C) catalytic domain VB87_RS09755 PF02657 Fe-S metabolism associated domain VB87_RS09770 PF00529 HlyD membrane-fusion protein of T1SS VB87_RS09790 PF13360 PQQ-like domain VB87_RS09805 PF01258 Prokaryotic dksA/traR C4-type zinc finger VB87_RS09820 PF01979 Amidohydrolase family VB87_RS09825 PF01551 Peptidase family M23 VB87_RS09825 PF08460 Bacterial SH3 domain VB87_RS09830 PF01095 Pectinesterase VB87_RS09835 PF00295 Glycosyl hydrolases family 28 VB87_RS09845 PF13419 Haloacid dehalogenase-like hydrolase VB87_RS09855 PF01979 Amidohydrolase family VB87_RS09860 PF01132 Elongation factor P (EF-P) OB domain VB87_RS09860 PF08207 Elongation factor P (EF-P) KOW-like domain VB87_RS09860 PF09285 Elongation factor P, C-terminal VB87_RS09865 PF04055 Radical SAM superfamily VB87_RS09870 PF13406 Transglycosylase SLT domain VB87_RS09875 PF00588 SpoU rRNA Methylase family VB87_RS09880 PF00459 Inositol monophosphatase family VB87_RS09885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS09885 PF00672 HAMP domain VB87_RS09885 PF02203 Tar ligand binding domain homologue VB87_RS09890 PF02355 Protein export membrane protein VB87_RS09890 PF07549 SecD/SecF GG Motif VB87_RS09895 PF07549 SecD/SecF GG Motif VB87_RS09895 PF13721 SecD export protein N-terminal TM region VB87_RS09895 PF02355 Protein export membrane protein VB87_RS09900 PF02699 Preprotein translocase subunit VB87_RS09905 PF01702 Queuine tRNA-ribosyltransferase VB87_RS09910 PF02547 Queuosine biosynthesis protein VB87_RS09920 PF00202 Aminotransferase class-III VB87_RS09925 PF02927 Cellulase N-terminal ig-like domain VB87_RS09925 PF00759 Glycosyl hydrolase family 9 VB87_RS09930 PF00753 Metallo-beta-lactamase superfamily VB87_RS09940 PF17990 L-Lysine epsilon oxidase N-terminal VB87_RS09940 PF18417 L-lysine epsilon oxidase C-terminal domain VB87_RS09945 PF01494 FAD binding domain VB87_RS09955 PF00037 4Fe-4S binding domain VB87_RS09965 PF01467 Cytidylyltransferase-like VB87_RS09975 PF00183 Hsp90 protein VB87_RS09975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS09980 PF07715 TonB-dependent Receptor Plug Domain VB87_RS09980 PF00593 TonB dependent receptor VB87_RS09985 PF16499 Alpha galactosidase A VB87_RS09985 PF17801 Alpha galactosidase C-terminal beta sandwich domain VB87_RS10005 PF00326 Prolyl oligopeptidase family VB87_RS10005 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region VB87_RS10010 PF04616 Glycosyl hydrolases family 43 VB87_RS10015 PF07532 Bacterial Ig-like domain (group 4) VB87_RS10020 PF00593 TonB dependent receptor VB87_RS10020 PF07715 TonB-dependent Receptor Plug Domain VB87_RS10040 PF13520 Amino acid permease VB87_RS10050 PF01321 Creatinase/Prolidase N-terminal domain VB87_RS10050 PF00557 Metallopeptidase family M24 VB87_RS10055 PF00171 Aldehyde dehydrogenase family VB87_RS10060 PF00701 Dihydrodipicolinate synthetase family VB87_RS10065 PF07992 Pyridine nucleotide-disulphide oxidoreductase VB87_RS10065 PF17806 Sarcosine oxidase A3 domain VB87_RS10075 PF01266 FAD dependent oxidoreductase VB87_RS10080 PF05544 Proline racemase VB87_RS10090 PF13419 Haloacid dehalogenase-like hydrolase VB87_RS10105 PF00202 Aminotransferase class-III VB87_RS10110 PF05222 Alanine dehydrogenase/PNT, N-terminal domain VB87_RS10110 PF01262 Alanine dehydrogenase/PNT, C-terminal domain VB87_RS10115 PF04286 Protein of unknown function (DUF445) VB87_RS10120 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VB87_RS10120 PF00072 Response regulator receiver domain VB87_RS10120 PF01627 Hpt domain VB87_RS10120 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS10120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS10120 PF00672 HAMP domain VB87_RS10125 PF00072 Response regulator receiver domain VB87_RS10130 PF02926 THUMP domain VB87_RS10130 PF01170 Putative RNA methylase family UPF0020 VB87_RS10130 PF10672 S-adenosylmethionine-dependent methyltransferase VB87_RS10160 PF00581 Rhodanese-like domain VB87_RS10165 PF00293 NUDIX domain VB87_RS10170 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase VB87_RS10170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VB87_RS10175 PF00378 Enoyl-CoA hydratase/isomerase VB87_RS10185 PF10576 Iron-sulfur binding domain of endonuclease III VB87_RS10185 PF00730 HhH-GPD superfamily base excision DNA repair protein VB87_RS10185 PF00633 Helix-hairpin-helix motif VB87_RS10195 PF12849 PBP superfamily domain VB87_RS10200 PF12849 PBP superfamily domain VB87_RS10205 PF00528 Binding-protein-dependent transport system inner membrane component VB87_RS10210 PF00528 Binding-protein-dependent transport system inner membrane component VB87_RS10215 PF00005 ABC transporter VB87_RS10220 PF01895 PhoU domain VB87_RS10230 PF05114 Protein of unknown function (DUF692) VB87_RS10240 PF00929 Exonuclease VB87_RS10250 PF08032 RNA 2'-O ribose methyltransferase substrate binding VB87_RS10250 PF00588 SpoU rRNA Methylase family VB87_RS10255 PF00575 S1 RNA binding domain VB87_RS10255 PF00773 RNB domain VB87_RS10255 PF08206 Ribonuclease B OB domain VB87_RS10255 PF08461 Ribonuclease R winged-helix domain VB87_RS10255 PF17876 Cold shock domain VB87_RS10265 PF06903 VirK protein VB87_RS10290 PF07690 Major Facilitator Superfamily VB87_RS10295 PF00529 HlyD membrane-fusion protein of T1SS VB87_RS10295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VB87_RS10300 PF02321 Outer membrane efflux protein VB87_RS10310 PF01804 Penicillin amidase VB87_RS10315 PF03989 DNA gyrase C-terminal domain, beta-propeller VB87_RS10315 PF00521 DNA gyrase/topoisomerase IV, subunit A VB87_RS10320 PF00210 Ferritin-like domain VB87_RS10330 PF00733 Asparagine synthase VB87_RS10330 PF13537 Glutamine amidotransferase domain VB87_RS10335 PF01546 Peptidase family M20/M25/M40 VB87_RS10335 PF07687 Peptidase dimerisation domain VB87_RS10340 PF03960 ArsC family VB87_RS10345 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal VB87_RS10345 PF14602 Hexapeptide repeat of succinyl-transferase VB87_RS10345 PF00132 Bacterial transferase hexapeptide (six repeats) VB87_RS10350 PF08335 GlnD PII-uridylyltransferase VB87_RS10350 PF01909 Nucleotidyltransferase domain VB87_RS10350 PF01966 HD domain VB87_RS10355 PF00557 Metallopeptidase family M24 VB87_RS10390 PF00318 Ribosomal protein S2 VB87_RS10395 PF00889 Elongation factor TS VB87_RS10400 PF00696 Amino acid kinase family VB87_RS10405 PF01765 Ribosome recycling factor VB87_RS10410 PF01255 Putative undecaprenyl diphosphate synthase VB87_RS10420 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase VB87_RS10420 PF13288 DXP reductoisomerase C-terminal domain VB87_RS10420 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain VB87_RS10425 PF02163 Peptidase family M50 VB87_RS10425 PF17820 PDZ domain VB87_RS10430 PF07244 Surface antigen variable number repeat VB87_RS10430 PF01103 Surface antigen VB87_RS10435 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD VB87_RS10435 PF00132 Bacterial transferase hexapeptide (six repeats) VB87_RS10440 PF07977 FabA-like domain VB87_RS10445 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 VB87_RS10445 PF00132 Bacterial transferase hexapeptide (six repeats) VB87_RS10450 PF02684 Lipid-A-disaccharide synthetase VB87_RS10455 PF01351 Ribonuclease HII VB87_RS10460 PF07733 Bacterial DNA polymerase III alpha NTPase domain VB87_RS10460 PF02811 PHP domain VB87_RS10460 PF01336 OB-fold nucleic acid binding domain VB87_RS10460 PF14579 Helix-hairpin-helix motif VB87_RS10460 PF17657 Bacterial DNA polymerase III alpha subunit finger domain VB87_RS10465 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit VB87_RS10470 PF03653 Uncharacterised protein family (UPF0093) VB87_RS10495 PF00144 Beta-lactamase VB87_RS10495 PF07930 D-aminopeptidase, domain B VB87_RS10500 PF03812 2-keto-3-deoxygluconate permease VB87_RS10510 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS10515 PF01479 S4 domain VB87_RS10515 PF00849 RNA pseudouridylate synthase VB87_RS10520 PF00271 Helicase conserved C-terminal domain VB87_RS10520 PF03880 DbpA RNA binding domain VB87_RS10520 PF00270 DEAD/DEAH box helicase VB87_RS10545 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain VB87_RS10545 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain VB87_RS10550 PF00654 Voltage gated chloride channel VB87_RS10565 PF01475 Ferric uptake regulator family VB87_RS10570 PF00749 tRNA synthetases class I (E and Q), catalytic domain VB87_RS10580 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ VB87_RS10590 PF02559 CarD-like/TRCF domain VB87_RS10590 PF03461 TRCF domain VB87_RS10590 PF17757 UvrB interaction domain VB87_RS10590 PF00271 Helicase conserved C-terminal domain VB87_RS10590 PF00270 DEAD/DEAH box helicase VB87_RS10595 PF00300 Histidine phosphatase superfamily (branch 1) VB87_RS10600 PF04493 Endonuclease V VB87_RS10610 PF05726 Pirin C-terminal cupin domain VB87_RS10610 PF02678 Pirin VB87_RS10620 PF13722 5TM C-terminal transporter carbon starvation CstA VB87_RS10620 PF02554 Carbon starvation protein CstA VB87_RS10625 PF04328 Selenoprotein, putative VB87_RS10640 PF02881 SRP54-type protein, helical bundle domain VB87_RS10640 PF00448 SRP54-type protein, GTPase domain VB87_RS10645 PF00633 Helix-hairpin-helix motif VB87_RS10645 PF10576 Iron-sulfur binding domain of endonuclease III VB87_RS10645 PF14815 NUDIX domain VB87_RS10645 PF00730 HhH-GPD superfamily base excision DNA repair protein VB87_RS10650 PF04362 Bacterial Fe(2+) trafficking VB87_RS10665 PF00570 HRDC domain VB87_RS10665 PF01612 3'-5' exonuclease VB87_RS10680 PF02130 Uncharacterized protein family UPF0054 VB87_RS10690 PF00571 CBS domain VB87_RS10690 PF03471 Transporter associated domain VB87_RS10700 PF01544 CorA-like Mg2+ transporter protein VB87_RS10705 PF00171 Aldehyde dehydrogenase family VB87_RS10710 PF00528 Binding-protein-dependent transport system inner membrane component VB87_RS10715 PF00528 Binding-protein-dependent transport system inner membrane component VB87_RS10720 PF08402 TOBE domain VB87_RS10720 PF00005 ABC transporter VB87_RS10725 PF13416 Bacterial extracellular solute-binding protein VB87_RS10730 PF00120 Glutamine synthetase, catalytic domain VB87_RS10735 PF07722 Peptidase C26 VB87_RS10740 PF00120 Glutamine synthetase, catalytic domain VB87_RS10745 PF01266 FAD dependent oxidoreductase VB87_RS10750 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS10750 PF00072 Response regulator receiver domain VB87_RS10755 PF07690 Major Facilitator Superfamily VB87_RS10755 PF00083 Sugar (and other) transporter VB87_RS10760 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS10760 PF00072 Response regulator receiver domain VB87_RS10765 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS10765 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) VB87_RS10765 PF00072 Response regulator receiver domain VB87_RS10765 PF01627 Hpt domain VB87_RS10765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS10765 PF00672 HAMP domain VB87_RS10775 PF00384 Molybdopterin oxidoreductase VB87_RS10780 PF02634 FdhD/NarQ family VB87_RS10785 PF00171 Aldehyde dehydrogenase family VB87_RS10800 PF14220 Domain of unknown function (DUF4329) VB87_RS10800 PF03527 RHS protein VB87_RS10800 PF05593 RHS Repeat VB87_RS10825 PF03150 Di-haem cytochrome c peroxidase VB87_RS10855 PF01636 Phosphotransferase enzyme family VB87_RS10860 PF00483 Nucleotidyl transferase VB87_RS10865 PF00308 Bacterial dnaA protein VB87_RS10875 PF02769 AIR synthase related protein, C-terminal domain VB87_RS10875 PF00586 AIR synthase related protein, N-terminal domain VB87_RS10885 PF00551 Formyl transferase VB87_RS10910 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) VB87_RS10920 PF01380 SIS domain VB87_RS10920 PF00571 CBS domain VB87_RS10940 PF00005 ABC transporter VB87_RS10945 PF04963 Sigma-54 factor, core binding domain VB87_RS10945 PF04552 Sigma-54, DNA binding domain VB87_RS10945 PF00309 Sigma-54 factor, Activator interacting domain (AID) VB87_RS10950 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein VB87_RS10960 PF02603 HPr Serine kinase N terminus VB87_RS10960 PF07475 HPr Serine kinase C-terminal domain VB87_RS10965 PF03668 P-loop ATPase protein family VB87_RS10975 PF00381 PTS HPr component phosphorylation site VB87_RS10980 PF00391 PEP-utilising enzyme, mobile domain VB87_RS10980 PF05524 PEP-utilising enzyme, N-terminal VB87_RS10980 PF02896 PEP-utilising enzyme, TIM barrel domain VB87_RS10985 PF00571 CBS domain VB87_RS10985 PF01769 Divalent cation transporter VB87_RS10985 PF03448 MgtE intracellular N domain VB87_RS10995 PF03600 Citrate transporter VB87_RS11000 PF00324 Amino acid permease VB87_RS11005 PF00672 HAMP domain VB87_RS11005 PF02203 Tar ligand binding domain homologue VB87_RS11005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS11010 PF02203 Tar ligand binding domain homologue VB87_RS11010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS11010 PF00672 HAMP domain VB87_RS11015 PF02203 Tar ligand binding domain homologue VB87_RS11015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS11015 PF00672 HAMP domain VB87_RS11025 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain VB87_RS11025 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain VB87_RS11030 PF03652 Holliday junction resolvase VB87_RS11035 PF02622 Uncharacterized ACR, COG1678 VB87_RS11040 PF13673 Acetyltransferase (GNAT) domain VB87_RS11040 PF13302 Acetyltransferase (GNAT) domain VB87_RS11040 PF03352 Methyladenine glycosylase VB87_RS11040 PF00958 GMP synthase C terminal domain VB87_RS11040 PF00117 Glutamine amidotransferase class-I VB87_RS11045 PF00437 Type II/IV secretion system protein VB87_RS11050 PF00437 Type II/IV secretion system protein VB87_RS11055 PF01168 Alanine racemase, N-terminal domain VB87_RS11065 PF14748 Pyrroline-5-carboxylate reductase dimerisation VB87_RS11065 PF03807 NADP oxidoreductase coenzyme F420-dependent VB87_RS11070 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region VB87_RS11070 PF01243 Pyridoxamine 5'-phosphate oxidase VB87_RS11075 PF01202 Shikimate kinase VB87_RS11080 PF01761 3-dehydroquinate synthase VB87_RS11085 PF02321 Outer membrane efflux protein VB87_RS11090 PF00873 AcrB/AcrD/AcrF family VB87_RS11095 PF13533 Biotin-lipoyl like VB87_RS11105 PF01208 Uroporphyrinogen decarboxylase (URO-D) VB87_RS11110 PF00144 Beta-lactamase VB87_RS11115 PF07690 Major Facilitator Superfamily VB87_RS11120 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS11120 PF17149 Periplasmic sensor domain found in signal transduction proteins VB87_RS11120 PF00672 HAMP domain VB87_RS11120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS11120 PF01627 Hpt domain VB87_RS11120 PF00072 Response regulator receiver domain VB87_RS11125 PF04264 YceI-like domain VB87_RS11130 PF01292 Prokaryotic cytochrome b561 VB87_RS11145 PF03313 Serine dehydratase alpha chain VB87_RS11145 PF03315 Serine dehydratase beta chain VB87_RS11150 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS11160 PF00553 Cellulose binding domain VB87_RS11160 PF00704 Glycosyl hydrolases family 18 VB87_RS11160 PF00041 Fibronectin type III domain VB87_RS11165 PF00742 Homoserine dehydrogenase VB87_RS11165 PF00696 Amino acid kinase family VB87_RS11165 PF03447 Homoserine dehydrogenase, NAD binding domain VB87_RS11170 PF01053 Cys/Met metabolism PLP-dependent enzyme VB87_RS11175 PF00561 alpha/beta hydrolase fold VB87_RS11180 PF01551 Peptidase family M23 VB87_RS11180 PF08525 Opacity-associated protein A N-terminal motif VB87_RS11180 PF01476 LysM domain VB87_RS11185 PF00009 Elongation factor Tu GTP binding domain VB87_RS11185 PF16658 Class II release factor RF3, C-terminal domain VB87_RS11190 PF03006 Haemolysin-III related VB87_RS11195 PF00571 CBS domain VB87_RS11200 PF00535 Glycosyl transferase family 2 VB87_RS11205 PF00912 Transglycosylase VB87_RS11210 PF01430 Hsp33 protein VB87_RS11220 PF07715 TonB-dependent Receptor Plug Domain VB87_RS11220 PF00593 TonB dependent receptor VB87_RS11225 PF00440 Bacterial regulatory proteins, tetR family VB87_RS11235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain VB87_RS11235 PF02770 Acyl-CoA dehydrogenase, middle domain VB87_RS11235 PF09317 Domain of unknown function (DUF1974) VB87_RS11235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain VB87_RS11245 PF05199 GMC oxidoreductase VB87_RS11245 PF00732 GMC oxidoreductase VB87_RS11260 PF01597 Glycine cleavage H-protein VB87_RS11265 PF08669 Glycine cleavage T-protein C-terminal barrel domain VB87_RS11265 PF01571 Aminomethyltransferase folate-binding domain VB87_RS11275 PF16200 C-terminal region of band_7 VB87_RS11275 PF01145 SPFH domain / Band 7 family VB87_RS11285 PF03819 MazG nucleotide pyrophosphohydrolase domain VB87_RS11290 PF00459 Inositol monophosphatase family VB87_RS11295 PF00293 NUDIX domain VB87_RS11300 PF00202 Aminotransferase class-III VB87_RS11305 PF04452 RNA methyltransferase VB87_RS11320 PF02685 Glucokinase VB87_RS11335 PF00704 Glycosyl hydrolases family 18 VB87_RS11335 PF01476 LysM domain VB87_RS11340 PF00728 Glycosyl hydrolase family 20, catalytic domain VB87_RS11340 PF02838 Glycosyl hydrolase family 20, domain 2 VB87_RS11340 PF07691 PA14 domain VB87_RS11350 PF14310 Fibronectin type III-like domain VB87_RS11350 PF00933 Glycosyl hydrolase family 3 N terminal domain VB87_RS11350 PF07691 PA14 domain VB87_RS11350 PF01915 Glycosyl hydrolase family 3 C-terminal domain VB87_RS11360 PF07971 Glycosyl hydrolase family 92 VB87_RS11360 PF17678 Glycosyl hydrolase family 92 N-terminal domain VB87_RS11365 PF01301 Glycosyl hydrolases family 35 VB87_RS11370 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS11370 PF08447 PAS fold VB87_RS11370 PF08448 PAS fold VB87_RS11370 PF00563 EAL domain VB87_RS11385 PF03932 CutC family VB87_RS11390 PF01112 Asparaginase VB87_RS11395 PF00488 MutS domain V VB87_RS11395 PF05190 MutS family domain IV VB87_RS11395 PF05192 MutS domain III VB87_RS11395 PF05188 MutS domain II VB87_RS11395 PF01624 MutS domain I VB87_RS11400 PF07683 Cobalamin synthesis protein cobW C-terminal domain VB87_RS11400 PF02492 CobW/HypB/UreG, nucleotide-binding domain VB87_RS11410 PF07715 TonB-dependent Receptor Plug Domain VB87_RS11410 PF00593 TonB dependent receptor VB87_RS11435 PF00072 Response regulator receiver domain VB87_RS11435 PF01584 CheW-like domain VB87_RS11435 PF02895 Signal transducing histidine kinase, homodimeric domain VB87_RS11435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS11435 PF01627 Hpt domain VB87_RS11440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS11440 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term VB87_RS11445 PF01584 CheW-like domain VB87_RS11450 PF00072 Response regulator receiver domain VB87_RS11455 PF00072 Response regulator receiver domain VB87_RS11460 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain VB87_RS11460 PF02951 Prokaryotic glutathione synthetase, N-terminal domain VB87_RS11470 PF00593 TonB dependent receptor VB87_RS11475 PF00814 Glycoprotease family VB87_RS11480 PF13307 Helicase C-terminal domain VB87_RS11480 PF04851 Type III restriction enzyme, res subunit VB87_RS11490 PF14814 Bifunctional transglycosylase second domain VB87_RS11490 PF00905 Penicillin binding protein transpeptidase domain VB87_RS11490 PF00912 Transglycosylase VB87_RS11495 PF00535 Glycosyl transferase family 2 VB87_RS11505 PF02824 TGS domain VB87_RS11505 PF04607 Region found in RelA / SpoT proteins VB87_RS11505 PF13291 ACT domain VB87_RS11520 PF00654 Voltage gated chloride channel VB87_RS11525 PF00271 Helicase conserved C-terminal domain VB87_RS11525 PF04408 Helicase associated domain (HA2) VB87_RS11525 PF11898 Domain of unknown function (DUF3418) VB87_RS11525 PF00270 DEAD/DEAH box helicase VB87_RS11525 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold VB87_RS11530 PF00210 Ferritin-like domain VB87_RS11535 PF16124 RecQ zinc-binding VB87_RS11535 PF09382 RQC domain VB87_RS11535 PF00570 HRDC domain VB87_RS11535 PF00271 Helicase conserved C-terminal domain VB87_RS11535 PF00270 DEAD/DEAH box helicase VB87_RS11560 PF05690 Thiazole biosynthesis protein ThiG VB87_RS11565 PF02390 Putative methyltransferase VB87_RS11570 PF02080 TrkA-C domain VB87_RS11570 PF03600 Citrate transporter VB87_RS11575 PF00355 Rieske [2Fe-2S] domain VB87_RS11585 PF01557 Fumarylacetoacetate (FAA) hydrolase family VB87_RS11590 PF01741 Large-conductance mechanosensitive channel, MscL VB87_RS11595 PF00356 Bacterial regulatory proteins, lacI family VB87_RS11600 PF01527 Transposase VB87_RS11615 PF05860 haemagglutination activity domain VB87_RS11615 PF13332 Hemagglutinin repeat VB87_RS11615 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain VB87_RS11615 PF05594 Haemagluttinin repeat VB87_RS11615 PF13018 Extended Signal Peptide of Type V secretion system VB87_RS11620 PF08845 Toxin SymE, type I toxin-antitoxin system VB87_RS11625 PF13018 Extended Signal Peptide of Type V secretion system VB87_RS11625 PF05594 Haemagluttinin repeat VB87_RS11625 PF13332 Hemagglutinin repeat VB87_RS11625 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain VB87_RS11625 PF05860 haemagglutination activity domain VB87_RS11635 PF05860 haemagglutination activity domain VB87_RS11635 PF13332 Hemagglutinin repeat VB87_RS11635 PF04829 Pre-toxin domain with VENN motif VB87_RS11635 PF15605 Bacterial toxin 28 VB87_RS11645 PF13018 Extended Signal Peptide of Type V secretion system VB87_RS11645 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain VB87_RS11645 PF05594 Haemagluttinin repeat VB87_RS11645 PF05860 haemagglutination activity domain VB87_RS11645 PF13332 Hemagglutinin repeat VB87_RS11655 PF08845 Toxin SymE, type I toxin-antitoxin system VB87_RS11660 PF13018 Extended Signal Peptide of Type V secretion system VB87_RS11660 PF13332 Hemagglutinin repeat VB87_RS11660 PF05594 Haemagluttinin repeat VB87_RS11660 PF05860 haemagglutination activity domain VB87_RS11660 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain VB87_RS11665 PF08845 Toxin SymE, type I toxin-antitoxin system VB87_RS11670 PF05860 haemagglutination activity domain VB87_RS11670 PF13018 Extended Signal Peptide of Type V secretion system VB87_RS11670 PF13332 Hemagglutinin repeat VB87_RS11670 PF04829 Pre-toxin domain with VENN motif VB87_RS11675 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB VB87_RS11675 PF08479 POTRA domain, ShlB-type VB87_RS11675 PF17287 POTRA domain VB87_RS11680 PF08032 RNA 2'-O ribose methyltransferase substrate binding VB87_RS11680 PF00588 SpoU rRNA Methylase family VB87_RS11690 PF00534 Glycosyl transferases group 1 VB87_RS11690 PF13439 Glycosyltransferase Family 4 VB87_RS11700 PF00009 Elongation factor Tu GTP binding domain VB87_RS11705 PF01507 Phosphoadenosine phosphosulfate reductase family VB87_RS11715 PF01661 Macro domain VB87_RS11720 PF00274 Fructose-bisphosphate aldolase class-I VB87_RS11735 PF02887 Pyruvate kinase, alpha/beta domain VB87_RS11735 PF00224 Pyruvate kinase, barrel domain VB87_RS11740 PF13419 Haloacid dehalogenase-like hydrolase VB87_RS11745 PF00162 Phosphoglycerate kinase VB87_RS11750 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain VB87_RS11750 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain VB87_RS11760 PF00581 Rhodanese-like domain VB87_RS11765 PF01022 Bacterial regulatory protein, arsR family VB87_RS11770 PF04273 Putative phosphatase (DUF442) VB87_RS11770 PF00753 Metallo-beta-lactamase superfamily VB87_RS11780 PF00528 Binding-protein-dependent transport system inner membrane component VB87_RS11785 PF00005 ABC transporter VB87_RS11785 PF03459 TOBE domain VB87_RS11800 PF03965 Penicillinase repressor VB87_RS11830 PF00665 Integrase core domain VB87_RS11830 PF13333 Integrase core domain VB87_RS11830 PF13276 HTH-like domain VB87_RS11835 PF01527 Transposase VB87_RS11895 PF02780 Transketolase, C-terminal domain VB87_RS11895 PF00456 Transketolase, thiamine diphosphate binding domain VB87_RS11895 PF02779 Transketolase, pyrimidine binding domain VB87_RS11920 PF13519 von Willebrand factor type A domain VB87_RS11930 PF01882 Protein of unknown function DUF58 VB87_RS11935 PF17863 AAA lid domain VB87_RS11935 PF07726 ATPase family associated with various cellular activities (AAA) VB87_RS11940 PF00263 Bacterial type II and III secretion system protein VB87_RS11940 PF11741 AMIN domain VB87_RS11940 PF03958 Bacterial type II/III secretion system short domain VB87_RS11940 PF07660 Secretin and TonB N terminus short domain VB87_RS11945 PF04351 Pilus assembly protein, PilP VB87_RS11950 PF04350 Pilus assembly protein, PilO VB87_RS11960 PF11104 Type IV pilus assembly protein PilM; VB87_RS11965 PF17092 Penicillin-binding protein OB-like domain VB87_RS11965 PF00912 Transglycosylase VB87_RS11965 PF00905 Penicillin binding protein transpeptidase domain VB87_RS11975 PF00285 Citrate synthase, C-terminal domain VB87_RS11980 PF01197 Ribosomal protein L31 VB87_RS11995 PF13276 HTH-like domain VB87_RS11995 PF13683 Integrase core domain VB87_RS12000 PF01527 Transposase VB87_RS12010 PF01053 Cys/Met metabolism PLP-dependent enzyme VB87_RS12025 PF01810 LysE type translocator VB87_RS12035 PF00120 Glutamine synthetase, catalytic domain VB87_RS12040 PF01527 Transposase VB87_RS12045 PF00665 Integrase core domain VB87_RS12045 PF13276 HTH-like domain VB87_RS12045 PF13333 Integrase core domain VB87_RS12080 PF00239 Resolvase, N terminal domain VB87_RS12080 PF02796 Helix-turn-helix domain of resolvase VB87_RS12130 PF02195 ParB-like nuclease domain VB87_RS12165 PF04829 Pre-toxin domain with VENN motif VB87_RS12165 PF05594 Haemagluttinin repeat VB87_RS12165 PF13332 Hemagglutinin repeat VB87_RS12180 PF13276 HTH-like domain VB87_RS12180 PF13683 Integrase core domain VB87_RS12200 PF03150 Di-haem cytochrome c peroxidase VB87_RS12230 PF06508 Queuosine biosynthesis protein QueC VB87_RS12235 PF04055 Radical SAM superfamily VB87_RS12245 PF00691 OmpA family VB87_RS12250 PF04052 TolB amino-terminal domain VB87_RS12250 PF07676 WD40-like Beta Propeller Repeat VB87_RS12260 PF02472 Biopolymer transport protein ExbD/TolR VB87_RS12265 PF01618 MotA/TolQ/ExbB proton channel family VB87_RS12270 PF03061 Thioesterase superfamily VB87_RS12275 PF17864 RuvB AAA lid domain VB87_RS12275 PF05496 Holliday junction DNA helicase RuvB P-loop domain VB87_RS12275 PF05491 RuvB C-terminal winged helix domain VB87_RS12280 PF02705 K+ potassium transporter VB87_RS12285 PF07499 RuvA, C-terminal domain VB87_RS12285 PF01330 RuvA N terminal domain VB87_RS12290 PF02075 Crossover junction endodeoxyribonuclease RuvC VB87_RS12295 PF01709 Transcriptional regulator VB87_RS12315 PF01336 OB-fold nucleic acid binding domain VB87_RS12315 PF00152 tRNA synthetases class II (D, K and N) VB87_RS12315 PF02938 GAD domain VB87_RS12330 PF04185 Phosphoesterase family VB87_RS12330 PF05506 Domain of unknown function (DUF756) VB87_RS12340 PF03466 LysR substrate binding domain VB87_RS12340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VB87_RS12345 PF12848 ABC transporter VB87_RS12345 PF00005 ABC transporter VB87_RS12350 PF07715 TonB-dependent Receptor Plug Domain VB87_RS12350 PF00593 TonB dependent receptor VB87_RS12365 PF04235 Protein of unknown function (DUF418) VB87_RS12370 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase VB87_RS12375 PF00877 NlpC/P60 family VB87_RS12380 PF00877 NlpC/P60 family VB87_RS12390 PF00398 Ribosomal RNA adenine dimethylase VB87_RS12395 PF00375 Sodium:dicarboxylate symporter family VB87_RS12400 PF01171 PP-loop family VB87_RS12400 PF11734 TilS substrate C-terminal domain VB87_RS12400 PF09179 TilS substrate binding domain VB87_RS12405 PF02609 Exonuclease VII small subunit VB87_RS12410 PF00348 Polyprenyl synthetase VB87_RS12420 PF01523 Putative modulator of DNA gyrase VB87_RS12425 PF04751 Protein of unknown function (DUF615) VB87_RS12430 PF01523 Putative modulator of DNA gyrase VB87_RS12440 PF10150 Ribonuclease E/G family VB87_RS12440 PF00575 S1 RNA binding domain VB87_RS12445 PF02545 Maf-like protein VB87_RS12460 PF00873 AcrB/AcrD/AcrF family VB87_RS12480 PF07478 D-ala D-ala ligase C-terminus VB87_RS12480 PF01820 D-ala D-ala ligase N-terminus VB87_RS12500 PF02590 Predicted SPOUT methyltransferase VB87_RS12515 PF01467 Cytidylyltransferase-like VB87_RS12530 PF13603 Leucyl-tRNA synthetase, Domain 2 VB87_RS12530 PF08264 Anticodon-binding domain of tRNA VB87_RS12530 PF00133 tRNA synthetases class I (I, L, M and V) VB87_RS12540 PF00085 Thioredoxin VB87_RS12550 PF02592 Putative vitamin uptake transporter VB87_RS12560 PF02574 Homocysteine S-methyltransferase VB87_RS12570 PF01588 Putative tRNA binding domain VB87_RS12570 PF09334 tRNA synthetases class I (M) VB87_RS12580 PF04060 Putative Fe-S cluster VB87_RS12595 PF04545 Sigma-70, region 4 VB87_RS12595 PF04542 Sigma-70 region 2 VB87_RS12640 PF01042 Endoribonuclease L-PSP VB87_RS12645 PF03706 Lysylphosphatidylglycerol synthase TM region VB87_RS12665 PF00724 NADH:flavin oxidoreductase / NADH oxidase family VB87_RS12670 PF00012 Hsp70 protein VB87_RS12685 PF05231 MASE1 VB87_RS12685 PF00563 EAL domain VB87_RS12725 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS12725 PF00072 Response regulator receiver domain VB87_RS12725 PF01627 Hpt domain VB87_RS12725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS12730 PF03466 LysR substrate binding domain VB87_RS12730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VB87_RS12735 PF00291 Pyridoxal-phosphate dependent enzyme VB87_RS12740 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain VB87_RS12740 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase VB87_RS12745 PF03797 Autotransporter beta-domain VB87_RS12745 PF00082 Subtilase family VB87_RS12745 PF12951 Passenger-associated-transport-repeat VB87_RS12750 PF00108 Thiolase, N-terminal domain VB87_RS12750 PF02803 Thiolase, C-terminal domain VB87_RS12765 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS12765 PF00072 Response regulator receiver domain VB87_RS12790 PF01048 Phosphorylase superfamily VB87_RS12795 PF00156 Phosphoribosyl transferase domain VB87_RS12800 PF00933 Glycosyl hydrolase family 3 N terminal domain VB87_RS12810 PF01928 CYTH domain VB87_RS12815 PF05958 tRNA (Uracil-5-)-methyltransferase VB87_RS12820 PF00072 Response regulator receiver domain VB87_RS12820 PF00486 Transcriptional regulatory protein, C terminal VB87_RS12825 PF11967 Recombination protein O N terminal VB87_RS12825 PF02565 Recombination protein O C terminal VB87_RS12830 PF07650 KH domain VB87_RS12830 PF01926 50S ribosome-binding GTPase VB87_RS12835 PF00035 Double-stranded RNA binding motif VB87_RS12835 PF14622 Ribonuclease-III-like VB87_RS12845 PF10502 Signal peptidase, peptidase S26 VB87_RS12850 PF03144 Elongation factor Tu domain 2 VB87_RS12850 PF06421 GTP-binding protein LepA C-terminus VB87_RS12850 PF00679 Elongation factor G C-terminus VB87_RS12850 PF00009 Elongation factor Tu GTP binding domain VB87_RS12855 PF13180 PDZ domain VB87_RS12865 PF04542 Sigma-70 region 2 VB87_RS12865 PF08281 Sigma-70, region 4 VB87_RS12870 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain VB87_RS12870 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain VB87_RS12870 PF00378 Enoyl-CoA hydratase/isomerase VB87_RS12875 PF01545 Cation efflux family VB87_RS12880 PF03601 Conserved hypothetical protein 698 VB87_RS12885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VB87_RS12885 PF03466 LysR substrate binding domain VB87_RS12930 PF03412 Peptidase C39 family VB87_RS12930 PF00005 ABC transporter VB87_RS12930 PF00664 ABC transporter transmembrane region VB87_RS12945 PF00561 alpha/beta hydrolase fold VB87_RS12945 PF00364 Biotin-requiring enzyme VB87_RS12955 PF11838 ERAP1-like C-terminal domain VB87_RS12955 PF01433 Peptidase family M1 domain VB87_RS12970 PF01209 ubiE/COQ5 methyltransferase family VB87_RS12980 PF07724 AAA domain (Cdc48 subfamily) VB87_RS12980 PF10431 C-terminal, D2-small domain, of ClpB protein VB87_RS12980 PF00004 ATPase family associated with various cellular activities (AAA) VB87_RS12985 PF00227 Proteasome subunit VB87_RS12990 PF00589 Phage integrase family VB87_RS12990 PF02899 Phage integrase, N-terminal SAM-like domain VB87_RS13000 PF01678 Diaminopimelate epimerase VB87_RS13010 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VB87_RS13010 PF00326 Prolyl oligopeptidase family VB87_RS13015 PF00155 Aminotransferase class I and II VB87_RS13020 PF00326 Prolyl oligopeptidase family VB87_RS13020 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain VB87_RS13035 PF01638 HxlR-like helix-turn-helix VB87_RS13050 PF03900 Porphobilinogen deaminase, C-terminal domain VB87_RS13050 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain VB87_RS13055 PF00072 Response regulator receiver domain VB87_RS13055 PF04397 LytTr DNA-binding domain VB87_RS13060 PF02230 Phospholipase/Carboxylesterase VB87_RS13065 PF13632 Glycosyl transferase family group 2 VB87_RS13070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS13070 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS13070 PF08448 PAS fold VB87_RS13070 PF13188 PAS domain VB87_RS13070 PF00072 Response regulator receiver domain VB87_RS13075 PF01584 CheW-like domain VB87_RS13075 PF00072 Response regulator receiver domain VB87_RS13080 PF00534 Glycosyl transferases group 1 VB87_RS13080 PF08323 Starch synthase catalytic domain VB87_RS13085 PF11941 Domain of unknown function (DUF3459) VB87_RS13085 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VB87_RS13085 PF00128 Alpha amylase, catalytic domain VB87_RS13090 PF02446 4-alpha-glucanotransferase VB87_RS13095 PF00128 Alpha amylase, catalytic domain VB87_RS13105 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VB87_RS13105 PF00128 Alpha amylase, catalytic domain VB87_RS13115 PF02954 Bacterial regulatory protein, Fis family VB87_RS13115 PF00072 Response regulator receiver domain VB87_RS13115 PF00158 Sigma-54 interaction domain VB87_RS13120 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS13120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS13125 PF00487 Fatty acid desaturase VB87_RS13130 PF00175 Oxidoreductase NAD-binding domain VB87_RS13130 PF00111 2Fe-2S iron-sulfur cluster binding domain VB87_RS13130 PF00970 Oxidoreductase FAD-binding domain VB87_RS13135 PF00440 Bacterial regulatory proteins, tetR family VB87_RS13140 PF01609 Transposase DDE domain VB87_RS13145 PF13340 Putative transposase of IS4/5 family (DUF4096) VB87_RS13185 PF06271 RDD family VB87_RS13220 PF02796 Helix-turn-helix domain of resolvase VB87_RS13220 PF00239 Resolvase, N terminal domain VB87_RS13245 PF01527 Transposase VB87_RS13250 PF13333 Integrase core domain VB87_RS13250 PF00665 Integrase core domain VB87_RS13250 PF13276 HTH-like domain VB87_RS13270 PF02195 ParB-like nuclease domain VB87_RS13295 PF13333 Integrase core domain VB87_RS13295 PF00665 Integrase core domain VB87_RS13295 PF13276 HTH-like domain VB87_RS13300 PF01527 Transposase VB87_RS13315 PF02384 N-6 DNA Methylase VB87_RS13320 PF09572 XamI restriction endonuclease VB87_RS13340 PF04610 TrbL/VirB6 plasmid conjugal transfer protein VB87_RS13355 PF07996 Type IV secretion system proteins VB87_RS13375 PF00589 Phage integrase family VB87_RS13385 PF00128 Alpha amylase, catalytic domain VB87_RS13385 PF02806 Alpha amylase, C-terminal all-beta domain VB87_RS13385 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) VB87_RS13395 PF07690 Major Facilitator Superfamily VB87_RS13415 PF00263 Bacterial type II and III secretion system protein VB87_RS13415 PF03958 Bacterial type II/III secretion system short domain VB87_RS13425 PF10741 Type II secretion system (T2SS), protein M subtype b VB87_RS13430 PF05137 Fimbrial assembly protein (PilN) VB87_RS13435 PF03934 Type II secretion system (T2SS), protein K VB87_RS13445 PF07963 Prokaryotic N-terminal methylation motif VB87_RS13450 PF12019 Type II transport protein GspH VB87_RS13455 PF08334 Type II secretion system (T2SS), protein G VB87_RS13460 PF00482 Type II secretion system (T2SS), protein F VB87_RS13465 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain VB87_RS13465 PF00437 Type II/IV secretion system protein VB87_RS13470 PF04151 Bacterial pre-peptidase C-terminal domain VB87_RS13470 PF00082 Subtilase family VB87_RS13475 PF05662 Coiled stalk of trimeric autotransporter adhesin VB87_RS13475 PF05658 Head domain of trimeric autotransporter adhesin VB87_RS13475 PF03895 YadA-like membrane anchor domain VB87_RS13475 PF13018 Extended Signal Peptide of Type V secretion system VB87_RS13480 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain VB87_RS13480 PF02769 AIR synthase related protein, C-terminal domain VB87_RS13480 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal VB87_RS13485 PF13098 Thioredoxin-like domain VB87_RS13485 PF10411 Disulfide bond isomerase protein N-terminus VB87_RS13490 PF00589 Phage integrase family VB87_RS13490 PF02899 Phage integrase, N-terminal SAM-like domain VB87_RS13510 PF00883 Cytosol aminopeptidase family, catalytic domain VB87_RS13510 PF02789 Cytosol aminopeptidase family, N-terminal domain VB87_RS13520 PF00133 tRNA synthetases class I (I, L, M and V) VB87_RS13520 PF10458 Valyl tRNA synthetase tRNA binding arm VB87_RS13520 PF08264 Anticodon-binding domain of tRNA VB87_RS13535 PF01066 CDP-alcohol phosphatidyltransferase VB87_RS13545 PF04073 Aminoacyl-tRNA editing domain VB87_RS13545 PF03129 Anticodon binding domain VB87_RS13545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) VB87_RS13550 PF00816 H-NS histone family VB87_RS13560 PF02405 Permease MlaE VB87_RS13565 PF00005 ABC transporter VB87_RS13570 PF02470 MlaD protein VB87_RS13570 PF03886 ABC-type transport auxiliary lipoprotein component VB87_RS13590 PF14307 Glycosyltransferase WbsX VB87_RS13590 PF05045 Rhamnan synthesis protein F VB87_RS13595 PF01144 Coenzyme A transferase VB87_RS13600 PF01144 Coenzyme A transferase VB87_RS13605 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain VB87_RS13605 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III VB87_RS13605 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VB87_RS13605 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I VB87_RS13610 PF00483 Nucleotidyl transferase VB87_RS13610 PF01050 Mannose-6-phosphate isomerase VB87_RS13615 PF04321 RmlD substrate binding domain VB87_RS13620 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase VB87_RS13625 PF00483 Nucleotidyl transferase VB87_RS13630 PF16363 GDP-mannose 4,6 dehydratase VB87_RS13635 PF01012 Electron transfer flavoprotein domain VB87_RS13640 PF01012 Electron transfer flavoprotein domain VB87_RS13640 PF00766 Electron transfer flavoprotein FAD-binding domain VB87_RS13650 PF00535 Glycosyl transferase family 2 VB87_RS13660 PF01266 FAD dependent oxidoreductase VB87_RS13670 PF13439 Glycosyltransferase Family 4 VB87_RS13670 PF00534 Glycosyl transferases group 1 VB87_RS13675 PF16363 GDP-mannose 4,6 dehydratase VB87_RS13680 PF16363 GDP-mannose 4,6 dehydratase VB87_RS13690 PF00005 ABC transporter VB87_RS13705 PF01053 Cys/Met metabolism PLP-dependent enzyme VB87_RS13710 PF00571 CBS domain VB87_RS13710 PF00291 Pyridoxal-phosphate dependent enzyme VB87_RS13730 PF00437 Type II/IV secretion system protein VB87_RS13735 PF14497 Glutathione S-transferase, C-terminal domain VB87_RS13735 PF02798 Glutathione S-transferase, N-terminal domain VB87_RS13745 PF00270 DEAD/DEAH box helicase VB87_RS13745 PF00271 Helicase conserved C-terminal domain VB87_RS13750 PF01242 6-pyruvoyl tetrahydropterin synthase VB87_RS13765 PF13185 GAF domain VB87_RS13775 PF00593 TonB dependent receptor VB87_RS13775 PF07715 TonB-dependent Receptor Plug Domain VB87_RS13780 PF13419 Haloacid dehalogenase-like hydrolase VB87_RS13785 PF11799 impB/mucB/samB family C-terminal domain VB87_RS13785 PF00817 impB/mucB/samB family VB87_RS13785 PF11798 IMS family HHH motif VB87_RS13790 PF01432 Peptidase family M3 VB87_RS13795 PF00291 Pyridoxal-phosphate dependent enzyme VB87_RS13805 PF14489 QueF-like protein VB87_RS13805 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term VB87_RS13810 PF13533 Biotin-lipoyl like VB87_RS13815 PF00873 AcrB/AcrD/AcrF family VB87_RS13820 PF00873 AcrB/AcrD/AcrF family VB87_RS13830 PF04209 homogentisate 1,2-dioxygenase VB87_RS13835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily VB87_RS13850 PF00854 POT family VB87_RS13855 PF03301 Tryptophan 2,3-dioxygenase VB87_RS13865 PF00294 pfkB family carbohydrate kinase VB87_RS13870 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS13875 PF00924 Mechanosensitive ion channel VB87_RS13875 PF12794 Mechanosensitive ion channel inner membrane domain 1 VB87_RS13875 PF12795 Mechanosensitive ion channel porin domain VB87_RS13885 PF01728 FtsJ-like methyltransferase VB87_RS13885 PF18125 RlmM ferredoxin-like domain VB87_RS13890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain VB87_RS13890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold VB87_RS13910 PF01494 FAD binding domain VB87_RS13915 PF01494 FAD binding domain VB87_RS13925 PF01923 Cobalamin adenosyltransferase VB87_RS13930 PF00850 Histone deacetylase domain VB87_RS13935 PF03968 OstA-like protein VB87_RS13935 PF04453 LPS transport system D VB87_RS13940 PF00639 PPIC-type PPIASE domain VB87_RS13940 PF09312 SurA N-terminal domain VB87_RS13945 PF04166 Pyridoxal phosphate biosynthetic protein PdxA VB87_RS13950 PF00398 Ribosomal RNA adenine dimethylase VB87_RS13955 PF04379 ApaG domain VB87_RS13960 PF00149 Calcineurin-like phosphoesterase VB87_RS13965 PF00186 Dihydrofolate reductase VB87_RS13975 PF00303 Thymidylate synthase VB87_RS13980 PF01790 Prolipoprotein diacylglyceryl transferase VB87_RS13985 PF03741 Integral membrane protein TerC family VB87_RS13990 PF01219 Prokaryotic diacylglycerol kinase VB87_RS13995 PF08521 Two-component sensor kinase N-terminal VB87_RS13995 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS13995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS14000 PF00072 Response regulator receiver domain VB87_RS14000 PF00486 Transcriptional regulatory protein, C terminal VB87_RS14005 PF13472 GDSL-like Lipase/Acylhydrolase family VB87_RS14010 PF00005 ABC transporter VB87_RS14025 PF00593 TonB dependent receptor VB87_RS14025 PF07715 TonB-dependent Receptor Plug Domain VB87_RS14035 PF00248 Aldo/keto reductase family VB87_RS14040 PF07670 Nucleoside recognition VB87_RS14040 PF01773 Na+ dependent nucleoside transporter N-terminus VB87_RS14040 PF07662 Na+ dependent nucleoside transporter C-terminus VB87_RS14045 PF00294 pfkB family carbohydrate kinase VB87_RS14045 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) VB87_RS14060 PF01207 Dihydrouridine synthase (Dus) VB87_RS14070 PF02772 S-adenosylmethionine synthetase, central domain VB87_RS14070 PF02773 S-adenosylmethionine synthetase, C-terminal domain VB87_RS14070 PF00438 S-adenosylmethionine synthetase, N-terminal domain VB87_RS14075 PF00328 Histidine phosphatase superfamily (branch 2) VB87_RS14080 PF00311 Phosphoenolpyruvate carboxylase VB87_RS14085 PF05221 S-adenosyl-L-homocysteine hydrolase VB87_RS14085 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain VB87_RS14090 PF13649 Methyltransferase domain VB87_RS14130 PF02219 Methylenetetrahydrofolate reductase VB87_RS14135 PF00293 NUDIX domain VB87_RS14145 PF02810 SEC-C motif VB87_RS14145 PF07517 SecA DEAD-like domain VB87_RS14145 PF07516 SecA Wing and Scaffold domain VB87_RS14145 PF01043 SecA preprotein cross-linking domain VB87_RS14150 PF01551 Peptidase family M23 VB87_RS14160 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase VB87_RS14165 PF12327 FtsZ family, C-terminal domain VB87_RS14165 PF00091 Tubulin/FtsZ family, GTPase domain VB87_RS14170 PF02491 SHS2 domain inserted in FTSA VB87_RS14175 PF03799 Cell division protein FtsQ VB87_RS14175 PF08478 POTRA domain, FtsQ-type VB87_RS14180 PF07478 D-ala D-ala ligase C-terminus VB87_RS14180 PF01820 D-ala D-ala ligase N-terminus VB87_RS14185 PF01225 Mur ligase family, catalytic domain VB87_RS14185 PF08245 Mur ligase middle domain VB87_RS14185 PF02875 Mur ligase family, glutamate ligase domain VB87_RS14190 PF04101 Glycosyltransferase family 28 C-terminal domain VB87_RS14190 PF03033 Glycosyltransferase family 28 N-terminal domain VB87_RS14195 PF01098 Cell cycle protein VB87_RS14200 PF00953 Glycosyl transferase family 4 VB87_RS14205 PF01225 Mur ligase family, catalytic domain VB87_RS14205 PF08245 Mur ligase middle domain VB87_RS14205 PF02875 Mur ligase family, glutamate ligase domain VB87_RS14210 PF08245 Mur ligase middle domain VB87_RS14210 PF01225 Mur ligase family, catalytic domain VB87_RS14210 PF02875 Mur ligase family, glutamate ligase domain VB87_RS14215 PF00905 Penicillin binding protein transpeptidase domain VB87_RS14215 PF03717 Penicillin-binding Protein dimerisation domain VB87_RS14220 PF04999 Cell division protein FtsL VB87_RS14225 PF01795 MraW methylase family VB87_RS14230 PF02381 MraZ protein, putative antitoxin-like VB87_RS14235 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases VB87_RS14245 PF02021 Uncharacterised protein family UPF0102 VB87_RS14250 PF01565 FAD binding domain VB87_RS14250 PF02913 FAD linked oxidases, C-terminal domain VB87_RS14255 PF00486 Transcriptional regulatory protein, C terminal VB87_RS14255 PF00072 Response regulator receiver domain VB87_RS14260 PF02702 Osmosensitive K+ channel His kinase sensor domain VB87_RS14260 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS14260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS14260 PF13492 GAF domain VB87_RS14260 PF13493 Domain of unknown function (DUF4118) VB87_RS14265 PF02669 K+-transporting ATPase, c chain VB87_RS14275 PF03814 Potassium-transporting ATPase A subunit VB87_RS14290 PF00586 AIR synthase related protein, N-terminal domain VB87_RS14290 PF02769 AIR synthase related protein, C-terminal domain VB87_RS14295 PF01029 NusB family VB87_RS14300 PF00885 6,7-dimethyl-8-ribityllumazine synthase VB87_RS14305 PF00925 GTP cyclohydrolase II VB87_RS14305 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase VB87_RS14310 PF00677 Lumazine binding domain VB87_RS14315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region VB87_RS14315 PF01872 RibD C-terminal domain VB87_RS14325 PF03477 ATP cone domain VB87_RS14330 PF00464 Serine hydroxymethyltransferase VB87_RS14340 PF00005 ABC transporter VB87_RS14340 PF12848 ABC transporter VB87_RS14345 PF00140 Sigma-70 factor, region 1.2 VB87_RS14345 PF04542 Sigma-70 region 2 VB87_RS14345 PF04545 Sigma-70, region 4 VB87_RS14345 PF04539 Sigma-70 region 3 VB87_RS14345 PF04546 Sigma-70, non-essential region VB87_RS14345 PF03979 Sigma-70 factor, region 1.1 VB87_RS14350 PF02580 D-Tyr-tRNA(Tyr) deacylase VB87_RS14365 PF00925 GTP cyclohydrolase II VB87_RS14375 PF00535 Glycosyl transferase family 2 VB87_RS14390 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase VB87_RS14395 PF01189 16S rRNA methyltransferase RsmB/F VB87_RS14395 PF01029 NusB family VB87_RS14400 PF02911 Formyl transferase, C-terminal domain VB87_RS14400 PF00551 Formyl transferase VB87_RS14405 PF01327 Polypeptide deformylase VB87_RS14410 PF01476 LysM domain VB87_RS14415 PF02481 DNA recombination-mediator protein A VB87_RS14415 PF17782 DprA winged helix domain VB87_RS14420 PF04361 Protein of unknown function (DUF494) VB87_RS14425 PF07963 Prokaryotic N-terminal methylation motif VB87_RS14425 PF00114 Pilin (bacterial filament) VB87_RS14430 PF06271 RDD family VB87_RS14435 PF13368 Topoisomerase C-terminal repeat VB87_RS14435 PF01131 DNA topoisomerase VB87_RS14435 PF01751 Toprim domain VB87_RS14440 PF01300 Telomere recombination VB87_RS14465 PF01343 Peptidase family S49 VB87_RS14470 PF01554 MatE VB87_RS14480 PF00270 DEAD/DEAH box helicase VB87_RS14480 PF00271 Helicase conserved C-terminal domain VB87_RS14480 PF17764 3′ DNA-binding domain (3′BD) VB87_RS14480 PF18074 Primosomal protein N C-terminal domain VB87_RS14480 PF18319 PriA DNA helicase Cys-rich region (CRR) domain VB87_RS14490 PF00140 Sigma-70 factor, region 1.2 VB87_RS14490 PF04545 Sigma-70, region 4 VB87_RS14490 PF04542 Sigma-70 region 2 VB87_RS14495 PF03167 Uracil DNA glycosylase superfamily VB87_RS14500 PF01339 CheB methylesterase VB87_RS14500 PF00072 Response regulator receiver domain VB87_RS14505 PF18075 FtsX extracellular domain VB87_RS14510 PF00005 ABC transporter VB87_RS14515 PF00271 Helicase conserved C-terminal domain VB87_RS14515 PF00270 DEAD/DEAH box helicase VB87_RS14515 PF12300 ATP-dependent RNA helicase RhlB VB87_RS14520 PF00085 Thioredoxin VB87_RS14525 PF07498 Rho termination factor, N-terminal domain VB87_RS14525 PF07497 Rho termination factor, RNA-binding domain VB87_RS14525 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VB87_RS14530 PF03971 Monomeric isocitrate dehydrogenase VB87_RS14550 PF09704 CRISPR-associated protein (Cas_Cas5) VB87_RS14570 PF01867 CRISPR associated protein Cas1 VB87_RS14575 PF09827 CRISPR associated protein Cas2 VB87_RS14580 PF01380 SIS domain VB87_RS14585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VB87_RS14590 PF00005 ABC transporter VB87_RS14590 PF02687 FtsX-like permease family VB87_RS14590 PF12704 MacB-like periplasmic core domain VB87_RS14600 PF12704 MacB-like periplasmic core domain VB87_RS14600 PF00005 ABC transporter VB87_RS14600 PF02687 FtsX-like permease family VB87_RS14605 PF02687 FtsX-like permease family VB87_RS14605 PF12704 MacB-like periplasmic core domain VB87_RS14610 PF12704 MacB-like periplasmic core domain VB87_RS14610 PF02687 FtsX-like permease family VB87_RS14615 PF00158 Sigma-54 interaction domain VB87_RS14615 PF00072 Response regulator receiver domain VB87_RS14615 PF02954 Bacterial regulatory protein, Fis family VB87_RS14620 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS14620 PF00989 PAS fold VB87_RS14620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS14625 PF00132 Bacterial transferase hexapeptide (six repeats) VB87_RS14625 PF14602 Hexapeptide repeat of succinyl-transferase VB87_RS14625 PF12804 MobA-like NTP transferase domain VB87_RS14635 PF01817 Chorismate mutase type II VB87_RS14640 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain VB87_RS14640 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain VB87_RS14645 PF02874 ATP synthase alpha/beta family, beta-barrel domain VB87_RS14645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VB87_RS14650 PF00231 ATP synthase VB87_RS14655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain VB87_RS14655 PF02874 ATP synthase alpha/beta family, beta-barrel domain VB87_RS14655 PF00306 ATP synthase alpha/beta chain, C terminal domain VB87_RS14660 PF00213 ATP synthase delta (OSCP) subunit VB87_RS14665 PF00430 ATP synthase B/B' CF(0) VB87_RS14670 PF00137 ATP synthase subunit C VB87_RS14675 PF00119 ATP synthase A chain VB87_RS14685 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain VB87_RS14685 PF07992 Pyridine nucleotide-disulphide oxidoreductase VB87_RS14690 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) VB87_RS14690 PF02817 e3 binding domain VB87_RS14690 PF00364 Biotin-requiring enzyme VB87_RS14710 PF03180 NLPA lipoprotein VB87_RS14715 PF00528 Binding-protein-dependent transport system inner membrane component VB87_RS14720 PF09383 NIL domain VB87_RS14720 PF00005 ABC transporter VB87_RS14725 PF00892 EamA-like transporter family VB87_RS14730 PF04461 Protein of unknown function (DUF520) VB87_RS14740 PF01479 S4 domain VB87_RS14740 PF00849 RNA pseudouridylate synthase VB87_RS14745 PF08468 Methyltransferase small domain N-terminal VB87_RS14745 PF05175 Methyltransferase small domain VB87_RS14755 PF07995 Glucose / Sorbosone dehydrogenase VB87_RS14760 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS14760 PF00072 Response regulator receiver domain VB87_RS14760 PF00497 Bacterial extracellular solute-binding proteins, family 3 VB87_RS14760 PF01627 Hpt domain VB87_RS14760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS14760 PF00989 PAS fold VB87_RS14770 PF00665 Integrase core domain VB87_RS14770 PF13276 HTH-like domain VB87_RS14770 PF13333 Integrase core domain VB87_RS14780 PF00842 Alanine racemase, C-terminal domain VB87_RS14780 PF01168 Alanine racemase, N-terminal domain VB87_RS14785 PF01266 FAD dependent oxidoreductase VB87_RS14795 PF03572 Peptidase family S41 VB87_RS14795 PF00595 PDZ domain VB87_RS14800 PF01527 Transposase VB87_RS14805 PF01641 SelR domain VB87_RS14815 PF01618 MotA/TolQ/ExbB proton channel family VB87_RS14820 PF13677 Membrane MotB of proton-channel complex MotA/MotB VB87_RS14820 PF00691 OmpA family VB87_RS14865 PF00999 Sodium/hydrogen exchanger family VB87_RS14870 PF05711 Macrocin-O-methyltransferase (TylF) VB87_RS14875 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase VB87_RS14880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family VB87_RS14880 PF03466 LysR substrate binding domain VB87_RS14885 PF03358 NADPH-dependent FMN reductase VB87_RS14890 PF00248 Aldo/keto reductase family VB87_RS14900 PF07694 5TMR of 5TMR-LYT VB87_RS14900 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS14905 PF03707 Bacterial signalling protein N terminal repeat VB87_RS14905 PF00563 EAL domain VB87_RS14905 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS14915 PF00593 TonB dependent receptor VB87_RS14915 PF07715 TonB-dependent Receptor Plug Domain VB87_RS14935 PF13520 Amino acid permease VB87_RS14940 PF00553 Cellulose binding domain VB87_RS14940 PF00150 Cellulase (glycosyl hydrolase family 5) VB87_RS14945 PF01695 IstB-like ATP binding protein VB87_RS14950 PF00553 Cellulose binding domain VB87_RS14950 PF00150 Cellulase (glycosyl hydrolase family 5) VB87_RS14955 PF00675 Insulinase (Peptidase family M16) VB87_RS14955 PF05193 Peptidase M16 inactive domain VB87_RS14965 PF01204 Trehalase VB87_RS14970 PF00497 Bacterial extracellular solute-binding proteins, family 3 VB87_RS14975 PF01544 CorA-like Mg2+ transporter protein VB87_RS14980 PF00324 Amino acid permease VB87_RS14985 PF00892 EamA-like transporter family VB87_RS14995 PF08532 Beta-galactosidase trimerisation domain VB87_RS14995 PF02449 Beta-galactosidase VB87_RS14995 PF08533 Beta-galactosidase C-terminal domain VB87_RS15005 PF07690 Major Facilitator Superfamily VB87_RS15010 PF05506 Domain of unknown function (DUF756) VB87_RS15010 PF04185 Phosphoesterase family VB87_RS15015 PF01594 AI-2E family transporter VB87_RS15020 PF00920 Dehydratase family VB87_RS15040 PF00199 Catalase VB87_RS15040 PF06628 Catalase-related immune-responsive VB87_RS15045 PF13307 Helicase C-terminal domain VB87_RS15045 PF06733 DEAD_2 VB87_RS15050 PF08501 Shikimate dehydrogenase substrate binding domain VB87_RS15050 PF18317 Shikimate 5'-dehydrogenase C-terminal domain VB87_RS15050 PF01488 Shikimate / quinate 5-dehydrogenase VB87_RS15055 PF07676 WD40-like Beta Propeller Repeat VB87_RS15055 PF04052 TolB amino-terminal domain VB87_RS15060 PF00175 Oxidoreductase NAD-binding domain VB87_RS15060 PF00667 FAD binding domain VB87_RS15060 PF00258 Flavodoxin VB87_RS15070 PF00490 Delta-aminolevulinic acid dehydratase VB87_RS15085 PF00326 Prolyl oligopeptidase family VB87_RS15085 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region VB87_RS15090 PF00043 Glutathione S-transferase, C-terminal domain VB87_RS15090 PF02798 Glutathione S-transferase, N-terminal domain VB87_RS15095 PF03350 Uncharacterized protein family, UPF0114 VB87_RS15110 PF00005 ABC transporter VB87_RS15115 PF00561 alpha/beta hydrolase fold VB87_RS15120 PF00175 Oxidoreductase NAD-binding domain VB87_RS15120 PF00111 2Fe-2S iron-sulfur cluster binding domain VB87_RS15120 PF00970 Oxidoreductase FAD-binding domain VB87_RS15125 PF00005 ABC transporter VB87_RS15130 PF01061 ABC-2 type transporter VB87_RS15140 PF01026 TatD related DNase VB87_RS15145 PF00270 DEAD/DEAH box helicase VB87_RS15145 PF04408 Helicase associated domain (HA2) VB87_RS15145 PF08482 ATP-dependent helicase C-terminal VB87_RS15145 PF00271 Helicase conserved C-terminal domain VB87_RS15175 PF00849 RNA pseudouridylate synthase VB87_RS15185 PF00248 Aldo/keto reductase family VB87_RS15190 PF16884 N-terminal domain of oxidoreductase VB87_RS15190 PF00107 Zinc-binding dehydrogenase VB87_RS15195 PF09339 IclR helix-turn-helix domain VB87_RS15195 PF01614 Bacterial transcriptional regulator VB87_RS15210 PF00005 ABC transporter VB87_RS15210 PF13732 Domain of unknown function (DUF4162) VB87_RS15215 PF07715 TonB-dependent Receptor Plug Domain VB87_RS15215 PF00593 TonB dependent receptor VB87_RS15220 PF02627 Carboxymuconolactone decarboxylase family VB87_RS15225 PF12146 Serine aminopeptidase, S33 VB87_RS15230 PF00206 Lyase VB87_RS15230 PF10397 Adenylosuccinate lyase C-terminus VB87_RS15235 PF00775 Dioxygenase VB87_RS15240 PF00775 Dioxygenase VB87_RS15240 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal VB87_RS15245 PF02803 Thiolase, C-terminal domain VB87_RS15245 PF00108 Thiolase, N-terminal domain VB87_RS15250 PF01144 Coenzyme A transferase VB87_RS15255 PF01144 Coenzyme A transferase VB87_RS15260 PF00355 Rieske [2Fe-2S] domain VB87_RS15270 PF00111 2Fe-2S iron-sulfur cluster binding domain VB87_RS15270 PF00970 Oxidoreductase FAD-binding domain VB87_RS15280 PF01494 FAD binding domain VB87_RS15285 PF02311 AraC-like ligand binding domain VB87_RS15285 PF12833 Helix-turn-helix domain VB87_RS15290 PF00171 Aldehyde dehydrogenase family VB87_RS15305 PF07690 Major Facilitator Superfamily VB87_RS15310 PF00501 AMP-binding enzyme VB87_RS15315 PF00378 Enoyl-CoA hydratase/isomerase VB87_RS15320 PF01740 STAS domain VB87_RS15320 PF00916 Sulfate permease family VB87_RS15325 PF00990 Diguanylate cyclase, GGDEF domain VB87_RS15325 PF07694 5TMR of 5TMR-LYT VB87_RS15330 PF01867 CRISPR associated protein Cas1 VB87_RS15335 PF18019 HD domain VB87_RS15340 PF09611 CRISPR-associated protein (Cas_Csy1) VB87_RS15345 PF09614 CRISPR-associated protein (Cas_Csy2) VB87_RS15350 PF09615 CRISPR-associated protein (Cas_Csy3) VB87_RS15355 PF09618 CRISPR-associated protein (Cas_Csy4) VB87_RS15390 PF01432 Peptidase family M3 VB87_RS15400 PF00472 RF-1 domain VB87_RS15410 PF00849 RNA pseudouridylate synthase VB87_RS15415 PF03109 ABC1 family VB87_RS15425 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family VB87_RS15430 PF00501 AMP-binding enzyme VB87_RS15435 PF03692 Putative zinc- or iron-chelating domain VB87_RS15445 PF00561 alpha/beta hydrolase fold VB87_RS15450 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal VB87_RS15450 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III VB87_RS15465 PF00588 SpoU rRNA Methylase family VB87_RS15475 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus VB87_RS15475 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus VB87_RS15480 PF02556 Preprotein translocase subunit SecB VB87_RS15515 PF00108 Thiolase, N-terminal domain VB87_RS15515 PF02803 Thiolase, C-terminal domain VB87_RS15530 PF02954 Bacterial regulatory protein, Fis family VB87_RS15530 PF00072 Response regulator receiver domain VB87_RS15530 PF00158 Sigma-54 interaction domain VB87_RS15535 PF00989 PAS fold VB87_RS15535 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS15535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS15540 PF00909 Ammonium Transporter Family VB87_RS15545 PF00543 Nitrogen regulatory protein P-II VB87_RS15555 PF00120 Glutamine synthetase, catalytic domain VB87_RS15555 PF03951 Glutamine synthetase, beta-Grasp domain VB87_RS15560 PF02673 Bacitracin resistance protein BacA VB87_RS15585 PF03061 Thioesterase superfamily VB87_RS15590 PF13091 PLD-like domain VB87_RS15605 PF07015 VirC1 protein VB87_RS15640 PF00083 Sugar (and other) transporter VB87_RS15660 PF00270 DEAD/DEAH box helicase VB87_RS15660 PF09369 Domain of unknown function (DUF1998) VB87_RS15660 PF00271 Helicase conserved C-terminal domain VB87_RS15675 PF00310 Glutamine amidotransferases class-II VB87_RS15675 PF01493 GXGXG motif VB87_RS15675 PF04898 Glutamate synthase central domain VB87_RS15675 PF01645 Conserved region in glutamate synthase VB87_RS15680 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster VB87_RS15680 PF07992 Pyridine nucleotide-disulphide oxidoreductase VB87_RS15685 PF02142 MGS-like domain VB87_RS15715 PF03594 Benzoate membrane transport protein VB87_RS15720 PF01590 GAF domain VB87_RS15720 PF08446 PAS fold VB87_RS15720 PF13426 PAS domain VB87_RS15720 PF00360 Phytochrome region VB87_RS15725 PF01126 Heme oxygenase VB87_RS15730 PF01263 Aldose 1-epimerase VB87_RS15735 PF13406 Transglycosylase SLT domain VB87_RS15740 PF02810 SEC-C motif VB87_RS15745 PF01925 Sulfite exporter TauE/SafE VB87_RS15770 PF01227 GTP cyclohydrolase I VB87_RS15775 PF00083 Sugar (and other) transporter VB87_RS15780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain VB87_RS15780 PF00672 HAMP domain VB87_RS15780 PF02203 Tar ligand binding domain homologue VB87_RS15795 PF04337 Protein of unknown function, DUF480 VB87_RS15800 PF07244 Surface antigen variable number repeat VB87_RS15800 PF01103 Surface antigen VB87_RS15800 PF17243 POTRA domain TamA domain 1 VB87_RS15805 PF04357 TamB, inner membrane protein subunit of TAM complex VB87_RS15810 PF18324 Hypothetical protein TT1725 VB87_RS15810 PF00180 Isocitrate/isopropylmalate dehydrogenase VB87_RS15830 PF01734 Patatin-like phospholipase VB87_RS15835 PF01546 Peptidase family M20/M25/M40 VB87_RS15835 PF07687 Peptidase dimerisation domain VB87_RS15845 PF03741 Integral membrane protein TerC family VB87_RS15850 PF10672 S-adenosylmethionine-dependent methyltransferase VB87_RS15850 PF17785 PUA-like domain VB87_RS15875 PF04820 Tryptophan halogenase VB87_RS15880 PF13520 Amino acid permease VB87_RS15885 PF00072 Response regulator receiver domain VB87_RS15885 PF00196 Bacterial regulatory proteins, luxR family VB87_RS15890 PF08447 PAS fold VB87_RS15890 PF00989 PAS fold VB87_RS15890 PF00512 His Kinase A (phospho-acceptor) domain VB87_RS15890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase VB87_RS15890 PF13493 Domain of unknown function (DUF4118) VB87_RS15890 PF13426 PAS domain VB87_RS15895 PF02308 MgtC family VB87_RS15905 PF00873 AcrB/AcrD/AcrF family VB87_RS15910 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion VB87_RS15920 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain VB87_RS15920 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain VB87_RS15920 PF06827 Zinc finger found in FPG and IleRS VB87_RS15925 PF04349 Periplasmic glucan biosynthesis protein, MdoG VB87_RS15935 PF00265 Thymidine kinase VB87_RS15940 PF00580 UvrD/REP helicase N-terminal domain VB87_RS15940 PF13361 UvrD-like helicase C-terminal domain VB87_RS15950 PF00005 ABC transporter VB87_RS15955 PF01638 HxlR-like helix-turn-helix VB87_RS15970 PF10396 GTP-binding protein TrmE N-terminus VB87_RS15970 PF01926 50S ribosome-binding GTPase VB87_RS15970 PF12631 MnmE helical domain VB87_RS15975 PF14849 YidC periplasmic domain VB87_RS15975 PF02096 60Kd inner membrane protein VB87_RS15980 PF00825 Ribonuclease P VB87_RS15985 PF00468 Ribosomal protein L34