locus-tag	class	description
XaFJ1_RS00015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
XaFJ1_RS00020	COG0187	DNA topoisomerase II activity
XaFJ1_RS00025	COG1266	CAAX protease self-immunity
XaFJ1_RS00030	COG0501	Belongs to the peptidase M48B family
XaFJ1_RS00075	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
XaFJ1_RS00120	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
XaFJ1_RS00125	COG1074	ATP-dependent DNA helicase activity
XaFJ1_RS00130	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
XaFJ1_RS00135	COG1127	ABC transporter
XaFJ1_RS00140	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
XaFJ1_RS00145	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
XaFJ1_RS00160	COG2853	Lipoprotein
XaFJ1_RS00165	COG0386	Belongs to the glutathione peroxidase family
XaFJ1_RS00175	COG1322	Protein conserved in bacteria
XaFJ1_RS00185	COG3693	PFAM glycoside hydrolase, family 10
XaFJ1_RS00200	COG2211	Major facilitator Superfamily
XaFJ1_RS00215	COG2937	Belongs to the GPAT DAPAT family
XaFJ1_RS00240	COG0284	orotidine-5'-phosphate decarboxylase activity
XaFJ1_RS00245	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
XaFJ1_RS00280	COG3186	Phenylalanine-4-hydroxylase
XaFJ1_RS00285	COG1522	sequence-specific DNA binding
XaFJ1_RS00295	COG0246	Mannitol dehydrogenase
XaFJ1_RS00300	COG1472	Belongs to the glycosyl hydrolase 3 family
XaFJ1_RS00310	COG4948	Mandelate Racemase Muconate Lactonizing
XaFJ1_RS00320	COG3661	Belongs to the glycosyl hydrolase 67 family
XaFJ1_RS00335	COG0037	tRNA processing
XaFJ1_RS00355	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
XaFJ1_RS00375	COG0805	protein transport
XaFJ1_RS00385	COG0519	Catalyzes the synthesis of GMP from XMP
XaFJ1_RS00385	COG0518	GMP synthase (glutamine-hydrolyzing) activity
XaFJ1_RS00395	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
XaFJ1_RS00410	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
XaFJ1_RS00415	COG3265	gluconokinase activity
XaFJ1_RS00420	COG2211	Major facilitator Superfamily
XaFJ1_RS00425	COG3459	Glycosyltransferase 36 associated
XaFJ1_RS00430	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
XaFJ1_RS00435	COG2205	protein histidine kinase activity
XaFJ1_RS00440	COG0457	Tetratricopeptide repeat
XaFJ1_RS00455	COG1971	Probably functions as a manganese efflux pump
XaFJ1_RS00495	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
XaFJ1_RS00515	COG2091	lysine biosynthetic process via aminoadipic acid
XaFJ1_RS00520	COG3540	Alkaline phosphatase
XaFJ1_RS00525	COG0357	Ribosomal RNA small subunit methyltransferase G
XaFJ1_RS00530	COG1192	Involved in chromosome partitioning
XaFJ1_RS00545	COG0463	Glycosyl transferase, family 2
XaFJ1_RS00555	COG0227	Belongs to the bacterial ribosomal protein bL28 family
XaFJ1_RS00560	COG0267	Belongs to the bacterial ribosomal protein bL33 family
XaFJ1_RS00575	COG0210	DNA helicase
XaFJ1_RS00585	COG0589	response to stress
XaFJ1_RS00610	COG0408	coproporphyrinogen oxidase activity
XaFJ1_RS00625	COG1271	oxidase subunit
XaFJ1_RS00630	COG1294	oxidase, subunit
XaFJ1_RS00635	COG0318	PFAM AMP-dependent synthetase and ligase
XaFJ1_RS00650	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
XaFJ1_RS00665	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
XaFJ1_RS00690	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_RS00705	COG0463	Glycosyl transferase, family 2
XaFJ1_RS00715	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
XaFJ1_RS00720	COG3100	YcgL domain-containing protein
XaFJ1_RS00740	COG0045	succinate-CoA ligase (ADP-forming) activity
XaFJ1_RS00740	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
XaFJ1_RS00740	COG1042	CoA-binding domain protein
XaFJ1_RS00765	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
XaFJ1_RS00770	COG1960	acyl-CoA dehydrogenase activity
XaFJ1_RS00775	COG3245	cytochrome
XaFJ1_RS00795	COG0523	cobalamin synthesis protein
XaFJ1_RS00805	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
XaFJ1_RS00810	COG1846	Transcriptional regulator
XaFJ1_RS00815	COG1764	response to oxidative stress
XaFJ1_RS00820	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
XaFJ1_RS00825	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
XaFJ1_RS00845	COG1902	pentaerythritol trinitrate reductase activity
XaFJ1_RS00850	COG2084	Dehydrogenase
XaFJ1_RS00860	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
XaFJ1_RS00870	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
XaFJ1_RS00880	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS00885	COG2205	protein histidine kinase activity
XaFJ1_RS00915	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
XaFJ1_RS00915	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
XaFJ1_RS00955	COG0180	Tryptophanyl-tRNA synthetase
XaFJ1_RS00985	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS00985	COG3706	GGDEF domain
XaFJ1_RS00995	COG0753	catalase activity
XaFJ1_RS01000	COG1320	monovalent cation:proton antiporter activity
XaFJ1_RS01005	COG2212	antiporter activity
XaFJ1_RS01015	COG0651	ATP synthesis coupled electron transport
XaFJ1_RS01020	COG1006	Multisubunit Na H antiporter MnhC subunit
XaFJ1_RS01025	COG2111	Na H antiporter
XaFJ1_RS01025	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
XaFJ1_RS01045	COG0484	heat shock protein binding
XaFJ1_RS01085	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
XaFJ1_RS01090	COG0134	indole-3-glycerol-phosphate synthase activity
XaFJ1_RS01105	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
XaFJ1_RS01110	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
XaFJ1_RS01120	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
XaFJ1_RS01125	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
XaFJ1_RS01145	COG1051	belongs to the nudix hydrolase family
XaFJ1_RS01150	COG2906	2 iron, 2 sulfur cluster binding
XaFJ1_RS01190	COG2816	NAD+ diphosphatase activity
XaFJ1_RS01205	COG1289	transmembrane transporter activity
XaFJ1_RS01210	COG0151	Belongs to the GarS family
XaFJ1_RS01220	COG0138	bifunctional purine biosynthesis protein purh
XaFJ1_RS01230	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
XaFJ1_RS01240	COG2264	protein methyltransferase activity
XaFJ1_RS01245	COG0439	Biotin carboxylase
XaFJ1_RS01250	COG0511	ligase activity, forming carbon-carbon bonds
XaFJ1_RS01255	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
XaFJ1_RS01260	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
XaFJ1_RS01275	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
XaFJ1_RS01290	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
XaFJ1_RS01300	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
XaFJ1_RS01305	COG0584	glycerophosphoryl diester phosphodiesterase
XaFJ1_RS01325	COG0778	Nitroreductase
XaFJ1_RS01330	COG2353	YceI-like domain
XaFJ1_RS01375	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
XaFJ1_RS01385	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XaFJ1_RS01390	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XaFJ1_RS01395	COG1538	Outer membrane efflux protein
XaFJ1_RS01440	COG0156	8-amino-7-oxononanoate synthase activity
XaFJ1_RS01445	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
XaFJ1_RS01450	COG1040	competence protein
XaFJ1_RS01465	COG2267	carboxylic ester hydrolase activity
XaFJ1_RS01470	COG0606	chelatase, subunit chli
XaFJ1_RS01475	COG2960	long-chain fatty acid transporting porin activity
XaFJ1_RS01490	COG1166	arginine decarboxylase activity
XaFJ1_RS01495	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
XaFJ1_RS01500	COG1819	glycosyl
XaFJ1_RS01510	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
XaFJ1_RS01510	COG2755	lipolytic protein G-D-S-L family
XaFJ1_RS01520	COG4221	oxidoreductase activity
XaFJ1_RS01535	COG2003	Belongs to the UPF0758 family
XaFJ1_RS01540	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
XaFJ1_RS01560	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
XaFJ1_RS01585	COG0739	heme binding
XaFJ1_RS01590	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
XaFJ1_RS01620	COG1064	alcohol dehydrogenase
XaFJ1_RS01635	COG4942	peptidase
XaFJ1_RS01640	COG0793	Belongs to the peptidase S41A family
XaFJ1_RS01675	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
XaFJ1_RS01685	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
XaFJ1_RS01710	COG1612	heme a metabolic process
XaFJ1_RS01715	COG0109	protoheme IX farnesyltransferase activity
XaFJ1_RS01735	COG0358	DNA primase activity
XaFJ1_RS01740	COG1295	ribonuclease BN
XaFJ1_RS01750	COG0828	Belongs to the bacterial ribosomal protein bS21 family
XaFJ1_RS01760	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
XaFJ1_RS01770	COG0531	amino acid
XaFJ1_RS01775	COG4948	Mandelate Racemase Muconate Lactonizing
XaFJ1_RS01785	COG3023	N-Acetylmuramoyl-L-alanine amidase
XaFJ1_RS01805	COG5383	Protein conserved in bacteria
XaFJ1_RS01810	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
XaFJ1_RS01840	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
XaFJ1_RS01875	COG4807	Protein conserved in bacteria
XaFJ1_RS01905	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_RS01910	COG0179	Fumarylacetoacetate (FAA) hydrolase
XaFJ1_RS01915	COG4948	Mandelate Racemase Muconate Lactonizing
XaFJ1_RS01920	COG3254	rhamnose metabolic process
XaFJ1_RS01925	COG0738	Major facilitator superfamily
XaFJ1_RS01930	COG1414	Transcriptional regulator
XaFJ1_RS01940	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
XaFJ1_RS01955	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
XaFJ1_RS01960	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
XaFJ1_RS01965	COG0583	DNA-binding transcription factor activity
XaFJ1_RS01970	COG3634	alkyl hydroperoxide reductase activity
XaFJ1_RS01980	COG2890	protein-(glutamine-N5) methyltransferase activity
XaFJ1_RS02000	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
XaFJ1_RS02000	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
XaFJ1_RS02015	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
XaFJ1_RS02035	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
XaFJ1_RS02040	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
XaFJ1_RS02055	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
XaFJ1_RS02075	COG1295	ribonuclease BN
XaFJ1_RS02080	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
XaFJ1_RS02090	COG0521	Mo-molybdopterin cofactor biosynthetic process
XaFJ1_RS02095	COG5297	Belongs to the glycosyl hydrolase family 6
XaFJ1_RS02105	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
XaFJ1_RS02110	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
XaFJ1_RS02135	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
XaFJ1_RS02145	COG0193	aminoacyl-tRNA hydrolase activity
XaFJ1_RS02150	COG0012	GTP binding
XaFJ1_RS02180	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
XaFJ1_RS02185	COG0250	Participates in transcription elongation, termination and antitermination
XaFJ1_RS02190	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
XaFJ1_RS02195	COG0081	regulation of translation
XaFJ1_RS02210	COG0222	ribosome binding
XaFJ1_RS02215	COG0085	RNA polymerase activity
XaFJ1_RS02220	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
XaFJ1_RS02230	COG0049	tRNA binding
XaFJ1_RS02235	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
XaFJ1_RS02245	COG0051	transcription antitermination factor activity, RNA binding
XaFJ1_RS02255	COG0088	Forms part of the polypeptide exit tunnel
XaFJ1_RS02260	COG0089	rRNA binding
XaFJ1_RS02265	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
XaFJ1_RS02275	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
XaFJ1_RS02290	COG0255	Belongs to the universal ribosomal protein uL29 family
XaFJ1_RS02295	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
XaFJ1_RS02300	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
XaFJ1_RS02305	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
XaFJ1_RS02310	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
XaFJ1_RS02315	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
XaFJ1_RS02330	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
XaFJ1_RS02335	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
XaFJ1_RS02340	COG1841	ribosomal large subunit assembly
XaFJ1_RS02350	COG0201	protein transport
XaFJ1_RS02355	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
XaFJ1_RS02360	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
XaFJ1_RS02365	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
XaFJ1_RS02370	COG0202	RNA polymerase activity
XaFJ1_RS02375	COG0203	ribosomal protein L17
XaFJ1_RS02385	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
XaFJ1_RS02395	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
XaFJ1_RS02410	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
XaFJ1_RS02420	COG0039	L-malate dehydrogenase activity
XaFJ1_RS02430	COG0625	glutathione transferase activity
XaFJ1_RS02450	COG0584	glycerophosphoryl diester phosphodiesterase
XaFJ1_RS02465	COG0446	pyridine nucleotide-disulphide oxidoreductase
XaFJ1_RS02465	COG1902	pentaerythritol trinitrate reductase activity
XaFJ1_RS02475	COG2885	chlorophyll binding
XaFJ1_RS02485	COG1187	pseudouridine synthase activity
XaFJ1_RS02490	COG0156	8-amino-7-oxononanoate synthase activity
XaFJ1_RS02505	COG0588	phosphoglycerate mutase activity
XaFJ1_RS02510	COG0285	dihydrofolate synthase activity
XaFJ1_RS02530	COG2833	Protein of unknown function (DUF455)
XaFJ1_RS02545	COG0438	transferase activity, transferring glycosyl groups
XaFJ1_RS02550	COG0248	Ppx GppA phosphatase
XaFJ1_RS02555	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
XaFJ1_RS02570	COG4783	chaperone-mediated protein folding
XaFJ1_RS02585	COG0473	3-isopropylmalate dehydrogenase activity
XaFJ1_RS02620	COG0544	peptidyl-prolyl cis-trans isomerase activity
XaFJ1_RS02625	COG0740	serine-type endopeptidase activity
XaFJ1_RS02630	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
XaFJ1_RS02660	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
XaFJ1_RS02670	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
XaFJ1_RS02680	COG0328	RNA-DNA hybrid ribonuclease activity
XaFJ1_RS02685	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
XaFJ1_RS02690	COG0631	protein serine/threonine phosphatase activity
XaFJ1_RS02705	COG0859	PFAM glycosyl transferase family 9
XaFJ1_RS02710	COG3642	lipopolysaccharide core region biosynthetic process
XaFJ1_RS02715	COG1234	tRNA 3'-trailer cleavage
XaFJ1_RS02720	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
XaFJ1_RS02735	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
XaFJ1_RS02740	COG0314	molybdopterin synthase activity
XaFJ1_RS02755	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
XaFJ1_RS02760	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
XaFJ1_RS02775	COG0537	adenosine 5'-monophosphoramidase activity
XaFJ1_RS02795	COG0714	Associated with various cellular activities
XaFJ1_RS02815	COG1399	metal-binding, possibly nucleic acid-binding protein
XaFJ1_RS02820	COG0333	Belongs to the bacterial ribosomal protein bL32 family
XaFJ1_RS02825	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
XaFJ1_RS02830	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
XaFJ1_RS02835	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_RS02850	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
XaFJ1_RS02855	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
XaFJ1_RS02860	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
XaFJ1_RS02915	COG4771	TonB-dependent receptor
XaFJ1_RS02930	COG4771	TonB-dependent receptor
XaFJ1_RS02945	COG0840	transmembrane signaling receptor activity
XaFJ1_RS02950	COG0678	peroxiredoxin activity
XaFJ1_RS02970	COG0604	alcohol dehydrogenase
XaFJ1_RS02975	COG0330	HflC and HflK could
XaFJ1_RS02980	COG0330	HflC and HflK could
XaFJ1_RS02985	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
XaFJ1_RS02990	COG3511	phospholipase C
XaFJ1_RS03000	COG0189	ligase activity
XaFJ1_RS03005	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS03010	COG0642	Histidine kinase
XaFJ1_RS03020	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
XaFJ1_RS03130	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
XaFJ1_RS03130	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
XaFJ1_RS03140	COG1262	PFAM Formylglycine-generating sulfatase enzyme
XaFJ1_RS03150	COG1174	glycine betaine transport
XaFJ1_RS03155	COG1125	glycine betaine transport
XaFJ1_RS03160	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XaFJ1_RS03165	COG0564	pseudouridine synthase activity
XaFJ1_RS03180	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
XaFJ1_RS03185	COG3387	PFAM Glycoside hydrolase 15-related
XaFJ1_RS03190	COG1877	trehalose-phosphatase activity
XaFJ1_RS03220	COG4152	abc transporter atp-binding protein
XaFJ1_RS03235	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XaFJ1_RS03240	COG1136	(ABC) transporter
XaFJ1_RS03245	COG0577	efflux transmembrane transporter activity
XaFJ1_RS03275	COG0542	response to heat
XaFJ1_RS03295	COG0019	diaminopimelate decarboxylase activity
XaFJ1_RS03300	COG4264	IucA IucC family
XaFJ1_RS03305	COG2814	Major facilitator Superfamily
XaFJ1_RS03310	COG4264	IucA IucC family
XaFJ1_RS03320	COG4772	TonB-dependent receptor
XaFJ1_RS03330	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
XaFJ1_RS03330	COG4651	solute:proton antiporter activity
XaFJ1_RS03355	COG4206	TonB-dependent receptor
XaFJ1_RS03365	COG2211	Major facilitator Superfamily
XaFJ1_RS03375	COG2199	diguanylate cyclase activity
XaFJ1_RS03375	COG2203	Gaf domain
XaFJ1_RS03395	COG1301	dicarboxylic acid transport
XaFJ1_RS03435	COG1560	Kdo2-lipid A biosynthetic process
XaFJ1_RS03440	COG1519	Transferase
XaFJ1_RS03445	COG1538	Outer membrane efflux protein
XaFJ1_RS03450	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
XaFJ1_RS03460	COG3300	MHYT domain
XaFJ1_RS03460	COG5001	Diguanylate cyclase
XaFJ1_RS03465	COG0473	3-isopropylmalate dehydrogenase activity
XaFJ1_RS03480	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
XaFJ1_RS03490	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
XaFJ1_RS03510	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
XaFJ1_RS03515	COG0840	transmembrane signaling receptor activity
XaFJ1_RS03530	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
XaFJ1_RS03540	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
XaFJ1_RS03560	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
XaFJ1_RS03580	COG0586	Pfam SNARE associated Golgi protein
XaFJ1_RS03595	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
XaFJ1_RS03600	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
XaFJ1_RS03610	COG1773	rubredoxin
XaFJ1_RS03615	COG2912	Transglutaminase-like superfamily
XaFJ1_RS03625	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
XaFJ1_RS03635	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
XaFJ1_RS03665	COG0006	proline dipeptidase activity
XaFJ1_RS03670	COG0006	proline dipeptidase activity
XaFJ1_RS03685	COG0635	Involved in the biosynthesis of porphyrin-containing compound
XaFJ1_RS03695	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
XaFJ1_RS03700	COG1561	YicC-like family, N-terminal region
XaFJ1_RS03705	COG0194	GDP metabolic process
XaFJ1_RS03710	COG1758	RNA polymerase activity
XaFJ1_RS03715	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
XaFJ1_RS03725	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
XaFJ1_RS03750	COG1077	Cell shape determining protein MreB Mrl
XaFJ1_RS03755	COG1792	Involved in formation and maintenance of cell shape
XaFJ1_RS03760	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
XaFJ1_RS03765	COG0768	penicillin binding
XaFJ1_RS03770	COG0772	Belongs to the SEDS family
XaFJ1_RS03785	COG2951	lytic endotransglycosylase activity
XaFJ1_RS03795	COG1686	Belongs to the peptidase S11 family
XaFJ1_RS03810	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
XaFJ1_RS03845	COG1090	epimerase
XaFJ1_RS03855	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
XaFJ1_RS03875	COG2205	protein histidine kinase activity
XaFJ1_RS03875	COG2202	Pas domain
XaFJ1_RS03880	COG0784	Response regulator, receiver
XaFJ1_RS03885	COG4191	Histidine kinase
XaFJ1_RS03890	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
XaFJ1_RS03915	COG4305	rare lipoprotein A
XaFJ1_RS03925	COG2188	Transcriptional regulator
XaFJ1_RS03935	COG1609	Transcriptional regulator
XaFJ1_RS03940	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
XaFJ1_RS03945	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
XaFJ1_RS03955	COG0741	lytic transglycosylase activity
XaFJ1_RS03970	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
XaFJ1_RS03995	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
XaFJ1_RS04010	COG0218	Necessary for normal cell division and for the maintenance of normal septation
XaFJ1_RS04035	COG2205	protein histidine kinase activity
XaFJ1_RS04040	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS04050	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
XaFJ1_RS04080	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
XaFJ1_RS04095	COG0436	Aminotransferase
XaFJ1_RS04100	COG1162	GTPase activity
XaFJ1_RS04125	COG2814	Major facilitator Superfamily
XaFJ1_RS04175	COG2194	sulfuric ester hydrolase activity
XaFJ1_RS04185	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS04190	COG2205	protein histidine kinase activity
XaFJ1_RS04200	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
XaFJ1_RS04205	COG2894	cell division
XaFJ1_RS04220	COG4585	Histidine kinase
XaFJ1_RS04265	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
XaFJ1_RS04275	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
XaFJ1_RS04290	COG1946	Acyl-CoA thioesterase
XaFJ1_RS04295	COG1250	3-hydroxyacyl-CoA dehydrogenase
XaFJ1_RS04295	COG1024	Enoyl-CoA hydratase
XaFJ1_RS04305	COG0824	Thioesterase
XaFJ1_RS04310	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
XaFJ1_RS04315	COG0261	This protein binds to 23S rRNA in the presence of protein L20
XaFJ1_RS04325	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
XaFJ1_RS04340	COG0196	riboflavin kinase activity
XaFJ1_RS04380	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
XaFJ1_RS04385	COG1845	cytochrome c oxidase, subunit III
XaFJ1_RS04390	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
XaFJ1_RS04400	COG0156	8-amino-7-oxononanoate synthase activity
XaFJ1_RS04415	COG0129	dihydroxy-acid dehydratase activity
XaFJ1_RS04435	COG1879	ABC-type sugar transport system periplasmic component
XaFJ1_RS04440	COG1129	ABC transporter
XaFJ1_RS04445	COG1172	Belongs to the binding-protein-dependent transport system permease family
XaFJ1_RS04450	COG1172	Belongs to the binding-protein-dependent transport system permease family
XaFJ1_RS04455	COG0475	glutathione-regulated potassium exporter activity
XaFJ1_RS04475	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
XaFJ1_RS04480	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
XaFJ1_RS04485	COG2070	2-Nitropropane dioxygenase
XaFJ1_RS04500	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
XaFJ1_RS04510	COG0335	large ribosomal subunit rRNA binding
XaFJ1_RS04515	COG0534	Mate efflux family protein
XaFJ1_RS04525	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
XaFJ1_RS04550	COG3590	peptidase
XaFJ1_RS04560	COG4206	TonB-dependent receptor
XaFJ1_RS04565	COG0489	protein tyrosine kinase activity
XaFJ1_RS04570	COG0717	Belongs to the dCTP deaminase family
XaFJ1_RS04590	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
XaFJ1_RS04610	COG2890	protein-(glutamine-N5) methyltransferase activity
XaFJ1_RS04615	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
XaFJ1_RS04620	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
XaFJ1_RS04625	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
XaFJ1_RS04695	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_RS04700	COG0149	triose-phosphate isomerase activity
XaFJ1_RS04705	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
XaFJ1_RS04715	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
XaFJ1_RS04725	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
XaFJ1_RS04730	COG0649	NAD binding
XaFJ1_RS04735	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
XaFJ1_RS04740	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
XaFJ1_RS04745	COG1034	ATP synthesis coupled electron transport
XaFJ1_RS04750	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
XaFJ1_RS04780	COG1007	ATP synthesis coupled electron transport
XaFJ1_RS04795	COG0195	Participates in both transcription termination and antitermination
XaFJ1_RS04805	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
XaFJ1_RS04820	COG1185	polyribonucleotide nucleotidyltransferase activity
XaFJ1_RS04825	COG3300	MHYT domain
XaFJ1_RS04825	COG5001	Diguanylate cyclase
XaFJ1_RS04845	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
XaFJ1_RS04850	COG0719	Fe-S assembly protein
XaFJ1_RS04855	COG0396	ATPase activity
XaFJ1_RS04860	COG3755	Protein conserved in bacteria
XaFJ1_RS04865	COG0719	Fe-S assembly protein
XaFJ1_RS04895	COG0384	phenazine biosynthesis protein PhzF
XaFJ1_RS04900	COG0527	aspartate kinase activity
XaFJ1_RS04915	COG0142	geranyltranstransferase activity
XaFJ1_RS04920	COG0629	single-stranded DNA binding
XaFJ1_RS04930	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
XaFJ1_RS04935	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
XaFJ1_RS04940	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
XaFJ1_RS04945	COG1012	belongs to the aldehyde dehydrogenase family
XaFJ1_RS04960	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
XaFJ1_RS04990	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
XaFJ1_RS05005	COG1024	Enoyl-CoA hydratase
XaFJ1_RS05010	COG1024	Enoyl-CoA hydratase
XaFJ1_RS05020	COG1024	Enoyl-CoA hydratase
XaFJ1_RS05040	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
XaFJ1_RS05045	COG3104	oligopeptide transport
XaFJ1_RS05050	COG1297	OPT oligopeptide transporter protein
XaFJ1_RS05055	COG1506	peptidase
XaFJ1_RS05055	COG0823	Involved in the tonB-independent uptake of proteins
XaFJ1_RS05080	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
XaFJ1_RS05085	COG0291	Belongs to the bacterial ribosomal protein bL35 family
XaFJ1_RS05090	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
XaFJ1_RS05095	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
XaFJ1_RS05105	COG0776	regulation of translation
XaFJ1_RS05130	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
XaFJ1_RS05140	COG1960	acyl-CoA dehydrogenase activity
XaFJ1_RS05165	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
XaFJ1_RS05165	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
XaFJ1_RS05175	COG0860	N-Acetylmuramoyl-L-alanine amidase
XaFJ1_RS05180	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
XaFJ1_RS05200	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_RS05225	COG2081	HI0933 family
XaFJ1_RS05230	COG4681	YaeQ
XaFJ1_RS05240	COG0625	glutathione transferase activity
XaFJ1_RS05260	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XaFJ1_RS05270	COG0513	Belongs to the DEAD box helicase family
XaFJ1_RS05300	COG1472	Belongs to the glycosyl hydrolase 3 family
XaFJ1_RS05340	COG0386	Belongs to the glutathione peroxidase family
XaFJ1_RS05390	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
XaFJ1_RS05395	COG0084	hydrolase, TatD family'
XaFJ1_RS05405	COG0305	Participates in initiation and elongation during chromosome replication
XaFJ1_RS05410	COG0415	Belongs to the DNA photolyase family
XaFJ1_RS05420	COG3047	cAMP biosynthetic process
XaFJ1_RS05420	COG2885	chlorophyll binding
XaFJ1_RS05425	COG3706	GGDEF domain
XaFJ1_RS05435	COG1819	glycosyl
XaFJ1_RS05440	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
XaFJ1_RS05475	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
XaFJ1_RS05480	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
XaFJ1_RS05490	COG2840	Smr protein MutS2
XaFJ1_RS05495	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
XaFJ1_RS05505	COG1238	metal cluster binding
XaFJ1_RS05520	COG1534	Rna-binding protein
XaFJ1_RS05525	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
XaFJ1_RS05530	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
XaFJ1_RS05535	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
XaFJ1_RS05540	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
XaFJ1_RS05545	COG1923	regulation of RNA biosynthetic process
XaFJ1_RS05550	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
XaFJ1_RS05555	COG1546	Belongs to the CinA family
XaFJ1_RS05560	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
XaFJ1_RS05565	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
XaFJ1_RS05570	COG2137	regulation of response to DNA damage stimulus
XaFJ1_RS05575	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
XaFJ1_RS05580	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
XaFJ1_RS05600	COG0351	phosphomethylpyrimidine kinase
XaFJ1_RS05600	COG0352	thiamine-phosphate diphosphorylase activity
XaFJ1_RS05615	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
XaFJ1_RS05620	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
XaFJ1_RS05630	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
XaFJ1_RS05640	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
XaFJ1_RS05645	COG3734	2-keto-3-deoxy-galactonokinase
XaFJ1_RS05655	COG4948	Mandelate Racemase Muconate Lactonizing
XaFJ1_RS05660	COG0800	Aldolase
XaFJ1_RS05680	COG1501	Belongs to the glycosyl hydrolase 31 family
XaFJ1_RS05685	COG1070	Carbohydrate kinase
XaFJ1_RS05695	COG0477	Major facilitator Superfamily
XaFJ1_RS05705	COG0860	N-Acetylmuramoyl-L-alanine amidase
XaFJ1_RS05720	COG0617	tRNA 3'-terminal CCA addition
XaFJ1_RS05730	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
XaFJ1_RS05745	COG0166	Belongs to the GPI family
XaFJ1_RS05765	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
XaFJ1_RS05780	COG1074	ATP-dependent DNA helicase activity
XaFJ1_RS05790	COG0812	UDP-N-acetylmuramate dehydrogenase activity
XaFJ1_RS05795	COG0167	dihydroorotate dehydrogenase activity
XaFJ1_RS05810	COG1012	belongs to the aldehyde dehydrogenase family
XaFJ1_RS05855	COG1136	(ABC) transporter
XaFJ1_RS05855	COG0577	efflux transmembrane transporter activity
XaFJ1_RS05910	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
XaFJ1_RS05920	COG0124	histidyl-tRNA synthetase
XaFJ1_RS05940	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
XaFJ1_RS05945	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
XaFJ1_RS05970	COG0140	phosphoribosyl-ATP diphosphatase activity
XaFJ1_RS05970	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
XaFJ1_RS05975	COG1702	phosphate starvation-inducible protein PhoH
XaFJ1_RS05980	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
XaFJ1_RS05985	COG0741	lytic transglycosylase activity
XaFJ1_RS05990	COG0723	plastoquinol--plastocyanin reductase activity
XaFJ1_RS05995	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
XaFJ1_RS06000	COG2857	Cytochrome c1
XaFJ1_RS06005	COG0625	glutathione transferase activity
XaFJ1_RS06010	COG2969	positive regulation of protein catabolic process
XaFJ1_RS06045	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
XaFJ1_RS06050	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_RS06055	COG2095	MarC family integral membrane protein
XaFJ1_RS06065	COG1611	Belongs to the LOG family
XaFJ1_RS06070	COG3275	phosphorelay sensor kinase activity
XaFJ1_RS06115	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
XaFJ1_RS06160	COG4133	protoheme IX ABC transporter activity
XaFJ1_RS06165	COG0436	Aminotransferase
XaFJ1_RS06185	COG2203	Gaf domain
XaFJ1_RS06185	COG2200	EAL domain
XaFJ1_RS06185	COG2199	diguanylate cyclase activity
XaFJ1_RS06190	COG2205	protein histidine kinase activity
XaFJ1_RS06190	COG0784	Response regulator, receiver
XaFJ1_RS06215	COG1187	pseudouridine synthase activity
XaFJ1_RS06220	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
XaFJ1_RS06225	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
XaFJ1_RS06230	COG2350	Protein conserved in bacteria
XaFJ1_RS06255	COG0395	ABC-type sugar transport system, permease component
XaFJ1_RS06270	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
XaFJ1_RS06275	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
XaFJ1_RS06280	COG0235	Class ii aldolase
XaFJ1_RS06285	COG0531	amino acid
XaFJ1_RS06290	COG0531	amino acid
XaFJ1_RS06300	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
XaFJ1_RS06305	COG0277	FAD linked oxidase domain protein
XaFJ1_RS06320	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
XaFJ1_RS06335	COG1024	Enoyl-CoA hydratase
XaFJ1_RS06355	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
XaFJ1_RS06360	COG0505	Belongs to the CarA family
XaFJ1_RS06365	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
XaFJ1_RS06370	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
XaFJ1_RS06380	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
XaFJ1_RS06400	COG2205	protein histidine kinase activity
XaFJ1_RS06400	COG2198	Histidine kinase
XaFJ1_RS06400	COG0784	Response regulator, receiver
XaFJ1_RS06405	COG1024	Enoyl-CoA hydratase
XaFJ1_RS06410	COG0318	PFAM AMP-dependent synthetase and ligase
XaFJ1_RS06440	COG2201	protein-glutamate methylesterase activity
XaFJ1_RS06455	COG0840	transmembrane signaling receptor activity
XaFJ1_RS06465	COG0835	chemotaxis
XaFJ1_RS06475	COG0840	transmembrane signaling receptor activity
XaFJ1_RS06480	COG0840	transmembrane signaling receptor activity
XaFJ1_RS06490	COG0840	transmembrane signaling receptor activity
XaFJ1_RS06495	COG0840	transmembrane signaling receptor activity
XaFJ1_RS06510	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS06520	COG0835	chemotaxis
XaFJ1_RS06525	COG1192	Involved in chromosome partitioning
XaFJ1_RS06530	COG1360	Flagellar Motor Protein
XaFJ1_RS06535	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
XaFJ1_RS06540	COG2198	Histidine kinase
XaFJ1_RS06540	COG0643	Histidine kinase
XaFJ1_RS06545	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
XaFJ1_RS06560	COG0455	bacterial-type flagellum organization
XaFJ1_RS06580	COG1684	flagellar biosynthetic protein fliR
XaFJ1_RS06585	COG1987	bacterial-type flagellum assembly
XaFJ1_RS06595	COG3190	flagellar
XaFJ1_RS06635	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
XaFJ1_RS06645	COG1677	Flagellar hook-basal body complex protein FliE
XaFJ1_RS06675	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_RS06680	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_RS06685	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
XaFJ1_RS06700	COG2204	response regulator
XaFJ1_RS06705	COG2201	protein-glutamate methylesterase activity
XaFJ1_RS06715	COG2197	response regulator
XaFJ1_RS06740	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
XaFJ1_RS06750	COG1256	bacterial-type flagellum assembly
XaFJ1_RS06765	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
XaFJ1_RS06770	COG4786	Flagellar basal body rod
XaFJ1_RS06775	COG4787	bacterial-type flagellum-dependent cell motility
XaFJ1_RS06780	COG1749	Flagellar hook protein flgE
XaFJ1_RS06785	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
XaFJ1_RS06790	COG1558	bacterial-type flagellum-dependent cell motility
XaFJ1_RS06800	COG0784	Response regulator, receiver
XaFJ1_RS06800	COG0835	chemotaxis
XaFJ1_RS06845	COG1116	anion transmembrane transporter activity
XaFJ1_RS06855	COG0840	transmembrane signaling receptor activity
XaFJ1_RS06860	COG2915	High frequency lysogenization protein hflD homolog
XaFJ1_RS06865	COG0482	sulfurtransferase activity
XaFJ1_RS06880	COG0542	response to heat
XaFJ1_RS06885	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
XaFJ1_RS06900	COG0492	ferredoxin-NADP+ reductase activity
XaFJ1_RS06905	COG1674	ftsk spoiiie
XaFJ1_RS06920	COG1230	cation diffusion facilitator family transporter
XaFJ1_RS06925	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
XaFJ1_RS06930	COG0038	chloride channel
XaFJ1_RS06980	COG1595	DNA-templated transcription, initiation
XaFJ1_RS07000	COG3038	cytochrome b561
XaFJ1_RS07055	COG0741	lytic transglycosylase activity
XaFJ1_RS07095	COG2207	Transcriptional regulator
XaFJ1_RS07110	COG4789	Type iii secretion
XaFJ1_RS07120	COG1157	protein secretion by the type III secretion system
XaFJ1_RS07140	COG4790	Type iii secretion
XaFJ1_RS07215	COG2192	nodulation
XaFJ1_RS07255	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
XaFJ1_RS07270	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
XaFJ1_RS07285	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
XaFJ1_RS07295	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_RS07295	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
XaFJ1_RS07295	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
XaFJ1_RS07295	COG3321	synthase
XaFJ1_RS07295	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
XaFJ1_RS07305	COG2050	protein possibly involved in aromatic compounds catabolism
XaFJ1_RS07415	COG5000	phosphorelay sensor kinase activity
XaFJ1_RS07415	COG5002	protein histidine kinase activity
XaFJ1_RS07430	COG3713	MltA-interacting MipA family protein
XaFJ1_RS07435	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XaFJ1_RS07470	COG1196	nuclear chromosome segregation
XaFJ1_RS07550	COG0582	viral genome integration into host DNA
XaFJ1_RS07575	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
XaFJ1_RS07580	COG0303	'Molybdopterin
XaFJ1_RS07585	COG0746	molybdenum cofactor guanylyltransferase activity
XaFJ1_RS07590	COG1160	GTP binding
XaFJ1_RS07595	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XaFJ1_RS07605	COG1426	Protein conserved in bacteria
XaFJ1_RS07620	COG0105	UTP biosynthetic process
XaFJ1_RS07630	COG1250	3-hydroxyacyl-CoA dehydrogenase
XaFJ1_RS07630	COG1024	Enoyl-CoA hydratase
XaFJ1_RS07635	COG0183	Belongs to the thiolase family
XaFJ1_RS07640	COG1210	Utp--glucose-1-phosphate uridylyltransferase
XaFJ1_RS07650	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
XaFJ1_RS07655	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
XaFJ1_RS07665	COG0776	regulation of translation
XaFJ1_RS07680	COG0257	Belongs to the bacterial ribosomal protein bL36 family
XaFJ1_RS07690	COG2957	Belongs to the agmatine deiminase family
XaFJ1_RS07695	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
XaFJ1_RS07720	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
XaFJ1_RS07720	COG0316	Belongs to the HesB IscA family
XaFJ1_RS07735	COG3064	Membrane
XaFJ1_RS07745	COG1530	ribonuclease E activity
XaFJ1_RS07845	COG2205	protein histidine kinase activity
XaFJ1_RS07845	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
XaFJ1_RS07850	COG2183	response to ionizing radiation
XaFJ1_RS07855	COG0784	Response regulator, receiver
XaFJ1_RS07855	COG4191	Histidine kinase
XaFJ1_RS07860	COG3243	poly(R)-hydroxyalkanoic acid synthase
XaFJ1_RS07870	COG1183	phosphatidylcholine synthase activity
XaFJ1_RS07875	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_RS07900	COG0668	transmembrane transport
XaFJ1_RS07905	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
XaFJ1_RS07910	COG0590	tRNA wobble adenosine to inosine editing
XaFJ1_RS07915	COG1321	iron dependent repressor
XaFJ1_RS07920	COG1914	H( )-stimulated, divalent metal cation uptake system
XaFJ1_RS07925	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
XaFJ1_RS07935	COG2900	Belongs to the SlyX family
XaFJ1_RS07950	COG0386	Belongs to the glutathione peroxidase family
XaFJ1_RS07955	COG1725	Transcriptional regulator
XaFJ1_RS07960	COG1131	(ABC) transporter
XaFJ1_RS08000	COG2850	peptidyl-arginine hydroxylation
XaFJ1_RS08010	COG0567	Dehydrogenase, E1 component
XaFJ1_RS08035	COG1739	Uncharacterized protein family UPF0029
XaFJ1_RS08040	COG1132	(ABC) transporter
XaFJ1_RS08045	COG1605	Chorismate mutase
XaFJ1_RS08045	COG0287	Prephenate dehydrogenase
XaFJ1_RS08055	COG0484	heat shock protein binding
XaFJ1_RS08065	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
XaFJ1_RS08070	COG1420	regulation of RNA biosynthetic process
XaFJ1_RS08075	COG0497	DNA recombination
XaFJ1_RS08080	COG0735	belongs to the Fur family
XaFJ1_RS08085	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XaFJ1_RS08100	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
XaFJ1_RS08115	COG1253	flavin adenine dinucleotide binding
XaFJ1_RS08145	COG1635	Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur
XaFJ1_RS08150	COG5001	Diguanylate cyclase
XaFJ1_RS08155	COG0069	glutamate synthase activity
XaFJ1_RS08160	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
XaFJ1_RS08180	COG0583	DNA-binding transcription factor activity
XaFJ1_RS08200	COG1605	Chorismate mutase
XaFJ1_RS08200	COG0077	Prephenate dehydratase
XaFJ1_RS08205	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
XaFJ1_RS08210	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
XaFJ1_RS08250	COG4221	oxidoreductase activity
XaFJ1_RS08265	COG1228	amidohydrolase
XaFJ1_RS08280	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
XaFJ1_RS08325	COG2269	With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF-P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta- lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P
XaFJ1_RS08330	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
XaFJ1_RS08335	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
XaFJ1_RS08355	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
XaFJ1_RS08370	COG0316	Belongs to the HesB IscA family
XaFJ1_RS08440	COG0288	reversible hydration of carbon dioxide
XaFJ1_RS08445	COG0662	Cupin 2, conserved barrel domain protein
XaFJ1_RS08465	COG2925	Exonuclease
XaFJ1_RS08490	COG2902	Dehydrogenase
XaFJ1_RS08495	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XaFJ1_RS08500	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XaFJ1_RS08505	COG1960	acyl-CoA dehydrogenase activity
XaFJ1_RS08515	COG1410	methionine synthase
XaFJ1_RS08515	COG0646	methionine synthase
XaFJ1_RS08520	COG0646	methionine synthase
XaFJ1_RS08520	COG1410	methionine synthase
XaFJ1_RS08600	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
XaFJ1_RS08655	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
XaFJ1_RS08700	COG0582	viral genome integration into host DNA
XaFJ1_RS08720	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
XaFJ1_RS08735	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
XaFJ1_RS08745	COG1663	tetraacyldisaccharide 4'-kinase activity
XaFJ1_RS08760	COG0811	peptide transport
XaFJ1_RS08775	COG4591	ABC-type transport system involved in lipoprotein release permease component
XaFJ1_RS08785	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
XaFJ1_RS08790	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
XaFJ1_RS08805	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
XaFJ1_RS08810	COG2009	succinate dehydrogenase
XaFJ1_RS08820	COG0354	folic acid binding
XaFJ1_RS08830	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
XaFJ1_RS08850	COG0800	Aldolase
XaFJ1_RS08880	COG2948	multi-organism process
XaFJ1_RS08925	COG2124	cytochrome p450
XaFJ1_RS09010	COG0556	nucleotide-excision repair
XaFJ1_RS09045	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
XaFJ1_RS09045	COG1017	nitric oxide dioxygenase activity
XaFJ1_RS09055	COG3604	Transcriptional regulator
XaFJ1_RS09075	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
XaFJ1_RS09090	COG0165	Argininosuccinate lyase
XaFJ1_RS09105	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
XaFJ1_RS09110	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
XaFJ1_RS09120	COG0137	argininosuccinate synthase activity
XaFJ1_RS09125	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
XaFJ1_RS09140	COG2166	iron-sulfur cluster assembly
XaFJ1_RS09175	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
XaFJ1_RS09190	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
XaFJ1_RS09200	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
XaFJ1_RS09215	COG4677	pectinesterase activity
XaFJ1_RS09220	COG5434	Belongs to the glycosyl hydrolase 28 family
XaFJ1_RS09240	COG0402	S-adenosylhomocysteine deaminase activity
XaFJ1_RS09250	COG1509	lysine 2,3-aminomutase activity
XaFJ1_RS09255	COG2951	lytic endotransglycosylase activity
XaFJ1_RS09270	COG0840	transmembrane signaling receptor activity
XaFJ1_RS09275	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
XaFJ1_RS09280	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
XaFJ1_RS09285	COG1862	Preprotein translocase
XaFJ1_RS09295	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
XaFJ1_RS09305	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
XaFJ1_RS09310	COG3291	Pkd domain containing protein
XaFJ1_RS09315	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
XaFJ1_RS09330	COG0644	oxidoreductase
XaFJ1_RS09335	COG0405	Gamma-glutamyltransferase
XaFJ1_RS09340	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
XaFJ1_RS09350	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
XaFJ1_RS09355	COG0742	ribosomal rna small subunit methyltransferase
XaFJ1_RS09370	COG3345	alpha-galactosidase
XaFJ1_RS09435	COG0531	amino acid
XaFJ1_RS09445	COG0006	proline dipeptidase activity
XaFJ1_RS09455	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
XaFJ1_RS09470	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
XaFJ1_RS09475	COG3938	Belongs to the proline racemase family
XaFJ1_RS09485	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
XaFJ1_RS09505	COG0686	Belongs to the AlaDH PNT family
XaFJ1_RS09510	COG2733	membrane
XaFJ1_RS09515	COG3437	response regulator, receiver
XaFJ1_RS09515	COG2205	protein histidine kinase activity
XaFJ1_RS09515	COG3850	Histidine kinase
XaFJ1_RS09515	COG4999	Histidine kinase
XaFJ1_RS09520	COG3437	response regulator, receiver
XaFJ1_RS09565	COG0494	nUDIX hydrolase
XaFJ1_RS09575	COG1024	Enoyl-CoA hydratase
XaFJ1_RS09585	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
XaFJ1_RS09595	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
XaFJ1_RS09605	COG0573	inorganic phosphate transmembrane transporter activity
XaFJ1_RS09610	COG0581	inorganic phosphate transmembrane transporter activity
XaFJ1_RS09620	COG0704	Plays a role in the regulation of phosphate uptake
XaFJ1_RS09640	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
XaFJ1_RS09650	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
XaFJ1_RS09655	COG0557	exoribonuclease II activity
XaFJ1_RS09690	COG2814	Major facilitator Superfamily
XaFJ1_RS09695	COG1566	PFAM secretion protein HlyD family protein
XaFJ1_RS09735	COG0367	asparagine synthase
XaFJ1_RS09740	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
XaFJ1_RS09745	COG1393	Belongs to the ArsC family
XaFJ1_RS09755	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
XaFJ1_RS09760	COG0024	Methionine aminopeptidase
XaFJ1_RS09800	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
XaFJ1_RS09815	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
XaFJ1_RS09820	COG0575	Belongs to the CDS family
XaFJ1_RS09825	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
XaFJ1_RS09830	COG0750	zinc metalloprotease
XaFJ1_RS09840	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XaFJ1_RS09850	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
XaFJ1_RS09915	COG3706	GGDEF domain
XaFJ1_RS09915	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS09920	COG1187	pseudouridine synthase activity
XaFJ1_RS09970	COG0735	belongs to the Fur family
XaFJ1_RS09985	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
XaFJ1_RS09995	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
XaFJ1_RS10000	COG0588	phosphoglycerate mutase activity
XaFJ1_RS10005	COG1515	deoxyribonuclease V activity
XaFJ1_RS10015	COG1741	Belongs to the pirin family
XaFJ1_RS10025	COG1966	Carbon starvation protein
XaFJ1_RS10030	COG2879	small protein
XaFJ1_RS10045	COG0552	protein localization to endoplasmic reticulum
XaFJ1_RS10050	COG1194	a g-specific adenine glycosylase
XaFJ1_RS10085	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
XaFJ1_RS10095	COG4535	Mg2 and Co2 transporter CorC
XaFJ1_RS10105	COG0598	Magnesium transport protein CorA
XaFJ1_RS10110	COG1012	belongs to the aldehyde dehydrogenase family
XaFJ1_RS10115	COG1177	transmembrane transport
XaFJ1_RS10120	COG1176	ABC-type spermidine putrescine transport system, permease component I
XaFJ1_RS10125	COG3842	ATPase activity
XaFJ1_RS10140	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
XaFJ1_RS10145	COG0174	glutamine synthetase
XaFJ1_RS10150	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
XaFJ1_RS10155	COG3706	GGDEF domain
XaFJ1_RS10155	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS10160	COG0477	Major facilitator Superfamily
XaFJ1_RS10165	COG3706	GGDEF domain
XaFJ1_RS10165	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS10170	COG2205	protein histidine kinase activity
XaFJ1_RS10170	COG5002	protein histidine kinase activity
XaFJ1_RS10170	COG0784	Response regulator, receiver
XaFJ1_RS10180	COG0243	molybdopterin cofactor binding
XaFJ1_RS10190	COG1012	belongs to the aldehyde dehydrogenase family
XaFJ1_RS10195	COG2963	transposase activity
XaFJ1_RS10215	COG3209	COG3209 Rhs family protein
XaFJ1_RS10230	COG3209	COG3209 Rhs family protein
XaFJ1_RS10275	COG3178	'Phosphotransferase
XaFJ1_RS10280	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
XaFJ1_RS10310	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
XaFJ1_RS10350	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
XaFJ1_RS10365	COG1137	ATPase activity
XaFJ1_RS10390	COG1660	Displays ATPase and GTPase activities
XaFJ1_RS10400	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
XaFJ1_RS10405	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
XaFJ1_RS10410	COG2239	Acts as a magnesium transporter
XaFJ1_RS10425	COG1113	amino acid transport
XaFJ1_RS10430	COG0840	transmembrane signaling receptor activity
XaFJ1_RS10435	COG0840	transmembrane signaling receptor activity
XaFJ1_RS10450	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
XaFJ1_RS10455	COG1678	Uncharacterized ACR, COG1678
XaFJ1_RS10460	COG0519	Catalyzes the synthesis of GMP from XMP
XaFJ1_RS10475	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
XaFJ1_RS10505	COG1538	Outer membrane efflux protein
XaFJ1_RS10510	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XaFJ1_RS10515	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
XaFJ1_RS10525	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
XaFJ1_RS10545	COG2353	YceI-like domain
XaFJ1_RS10550	COG3038	cytochrome b561
XaFJ1_RS10565	COG1760	l-serine dehydratase
XaFJ1_RS10570	COG3706	GGDEF domain
XaFJ1_RS10590	COG0527	aspartate kinase activity
XaFJ1_RS10590	COG0460	homoserine dehydrogenase
XaFJ1_RS10595	COG0626	cystathionine gamma-synthase activity
XaFJ1_RS10600	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
XaFJ1_RS10605	COG0739	heme binding
XaFJ1_RS10610	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
XaFJ1_RS10620	COG1272	protein, Hemolysin III
XaFJ1_RS10625	COG0517	IMP dehydrogenase activity
XaFJ1_RS10630	COG0463	Glycosyl transferase, family 2
XaFJ1_RS10645	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
XaFJ1_RS10655	COG4206	TonB-dependent receptor
XaFJ1_RS10695	COG0509	glycine decarboxylation via glycine cleavage system
XaFJ1_RS10700	COG0404	The glycine cleavage system catalyzes the degradation of glycine
XaFJ1_RS10710	COG0330	HflC and HflK could
XaFJ1_RS10715	COG3956	TIGRFAM MazG family protein
XaFJ1_RS10720	COG1218	3'(2'),5'-bisphosphate nucleotidase
XaFJ1_RS10725	COG0494	nUDIX hydrolase
XaFJ1_RS10735	COG1385	rRNA (uridine-N3-)-methyltransferase activity
XaFJ1_RS10745	COG0837	glucose binding
XaFJ1_RS10765	COG1388	LysM domain
XaFJ1_RS10765	COG3858	chitin binding
XaFJ1_RS10770	COG3525	Glycosyl hydrolase, family 20, catalytic domain
XaFJ1_RS10780	COG1472	Belongs to the glycosyl hydrolase 3 family
XaFJ1_RS10790	COG3537	Alpha-1,2-mannosidase
XaFJ1_RS10800	COG5001	Diguanylate cyclase
XaFJ1_RS10825	COG1446	asparaginase
XaFJ1_RS10830	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
XaFJ1_RS10835	COG0523	cobalamin synthesis protein
XaFJ1_RS10845	COG4774	siderophore transport
XaFJ1_RS10875	COG0840	transmembrane signaling receptor activity
XaFJ1_RS10880	COG0835	chemotaxis
XaFJ1_RS10895	COG0189	ligase activity
XaFJ1_RS10925	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
XaFJ1_RS10930	COG1216	Glycosyl transferase, family 2
XaFJ1_RS10940	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
XaFJ1_RS10960	COG1643	Atp-dependent helicase
XaFJ1_RS10965	COG0783	Belongs to the Dps family
XaFJ1_RS10970	COG0514	ATP-dependent DNA helicase (RecQ)
XaFJ1_RS11005	COG0220	tRNA (guanine-N7-)-methyltransferase activity
XaFJ1_RS11010	COG0471	metal ion transport
XaFJ1_RS11010	COG3273	potassium ion transport
XaFJ1_RS11025	COG0179	Fumarylacetoacetate (FAA) hydrolase
XaFJ1_RS11035	COG1609	Transcriptional regulator
XaFJ1_RS11135	COG3210	domain, Protein
XaFJ1_RS11140	COG2831	hemolysin activation secretion protein
XaFJ1_RS11145	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
XaFJ1_RS11155	COG0438	transferase activity, transferring glycosyl groups
XaFJ1_RS11165	COG2895	sulfate adenylyltransferase (ATP) activity
XaFJ1_RS11165	COG0529	Catalyzes the synthesis of activated sulfate
XaFJ1_RS11170	COG0175	sulfate reduction
XaFJ1_RS11180	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
XaFJ1_RS11185	COG3588	fructose-bisphosphate aldolase
XaFJ1_RS11200	COG0469	pyruvate kinase activity
XaFJ1_RS11215	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
XaFJ1_RS11225	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
XaFJ1_RS11230	COG0640	Transcriptional regulator
XaFJ1_RS11235	COG3453	Protein conserved in bacteria
XaFJ1_RS11235	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
XaFJ1_RS11240	COG0725	ABC transporter, periplasmic molybdate-binding protein
XaFJ1_RS11245	COG4149	molybdate abc transporter
XaFJ1_RS11250	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
XaFJ1_RS11370	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
XaFJ1_RS11420	COG0714	Associated with various cellular activities
XaFJ1_RS11450	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
XaFJ1_RS11465	COG0254	rRNA binding
XaFJ1_RS11505	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
XaFJ1_RS11510	COG1280	lysine exporter protein (LysE YggA)
XaFJ1_RS11520	COG0174	glutamine synthetase
XaFJ1_RS11635	COG1475	DNA binding
XaFJ1_RS11665	COG3210	domain, Protein
XaFJ1_RS11745	COG0602	queuosine metabolic process
XaFJ1_RS11755	COG2885	chlorophyll binding
XaFJ1_RS11760	COG0823	Involved in the tonB-independent uptake of proteins
XaFJ1_RS11770	COG0848	biopolymer transport protein
XaFJ1_RS11780	COG0824	Thioesterase
XaFJ1_RS11790	COG3158	transport of potassium into the cell
XaFJ1_RS11795	COG0632	four-way junction helicase activity
XaFJ1_RS11825	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
XaFJ1_RS11855	COG0488	(ABC) transporter
XaFJ1_RS11875	COG2311	Membrane
XaFJ1_RS11885	COG0791	NLP P60 protein
XaFJ1_RS11890	COG0791	NLP P60 protein
XaFJ1_RS11910	COG1301	dicarboxylic acid transport
XaFJ1_RS11915	COG0037	tRNA processing
XaFJ1_RS11920	COG1722	exodeoxyribonuclease VII activity
XaFJ1_RS11925	COG0142	geranyltranstransferase activity
XaFJ1_RS11935	COG0312	modulator of DNA gyrase
XaFJ1_RS11945	COG0312	modulator of DNA gyrase
XaFJ1_RS11955	COG1530	ribonuclease E activity
XaFJ1_RS11975	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XaFJ1_RS11990	COG1538	Outer membrane efflux protein
XaFJ1_RS12035	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
XaFJ1_RS12050	COG0495	leucyl-tRNA aminoacylation
XaFJ1_RS12060	COG3118	belongs to the thioredoxin family
XaFJ1_RS12070	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
XaFJ1_RS12080	COG2040	homocysteine
XaFJ1_RS12090	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
XaFJ1_RS12090	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
XaFJ1_RS12100	COG2878	Part of a membrane complex involved in electron transport
XaFJ1_RS12115	COG1595	DNA-templated transcription, initiation
XaFJ1_RS12140	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
XaFJ1_RS12155	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
XaFJ1_RS12160	COG0251	oxidation-reduction process
XaFJ1_RS12165	COG0392	lysyltransferase activity
XaFJ1_RS12180	COG1902	pentaerythritol trinitrate reductase activity
XaFJ1_RS12200	COG2200	EAL domain
XaFJ1_RS12245	COG0583	DNA-binding transcription factor activity
XaFJ1_RS12285	COG3706	GGDEF domain
XaFJ1_RS12285	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS12315	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
XaFJ1_RS12325	COG1472	Belongs to the glycosyl hydrolase 3 family
XaFJ1_RS12345	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS12355	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
XaFJ1_RS12370	COG0681	Belongs to the peptidase S26 family
XaFJ1_RS12375	COG0481	GTPase activity
XaFJ1_RS12380	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
XaFJ1_RS12395	COG1250	3-hydroxyacyl-CoA dehydrogenase
XaFJ1_RS12395	COG1024	Enoyl-CoA hydratase
XaFJ1_RS12405	COG2855	membrane
XaFJ1_RS12485	COG0596	Alpha beta hydrolase
XaFJ1_RS12485	COG0508	dehydrogenase complex catalyzes the overall conversion of
XaFJ1_RS12495	COG0308	aminopeptidase N
XaFJ1_RS12500	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
XaFJ1_RS12510	COG2226	methyltransferase
XaFJ1_RS12540	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
XaFJ1_RS12560	COG1505	serine-type exopeptidase activity
XaFJ1_RS12575	COG1733	regulation of RNA biosynthetic process
XaFJ1_RS12590	COG0181	hydroxymethylbilane synthase activity
XaFJ1_RS12600	COG0400	carboxylic ester hydrolase activity
XaFJ1_RS12615	COG2204	response regulator
XaFJ1_RS12620	COG0297	glycogen (starch) synthase activity
XaFJ1_RS12625	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
XaFJ1_RS12660	COG4191	Histidine kinase
XaFJ1_RS12675	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
XaFJ1_RS12710	COG1714	RDD family
XaFJ1_RS12790	COG1475	DNA binding
XaFJ1_RS12895	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
XaFJ1_RS12925	COG1450	Type ii and iii secretion system protein
XaFJ1_RS12940	COG3166	PFAM Fimbrial assembly family protein
XaFJ1_RS12945	COG3156	type II secretion system protein K
XaFJ1_RS12950	COG4795	General secretion pathway protein
XaFJ1_RS12955	COG2165	general secretion pathway protein
XaFJ1_RS12960	COG4970	Tfp pilus assembly protein FimT
XaFJ1_RS12965	COG2165	general secretion pathway protein
XaFJ1_RS12970	COG1459	type II secretion system
XaFJ1_RS12975	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
XaFJ1_RS12980	COG1404	Belongs to the peptidase S8 family
XaFJ1_RS12985	COG5295	Hep Hag repeat protein
XaFJ1_RS12990	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
XaFJ1_RS12990	COG0047	phosphoribosylformylglycinamidine synthase activity
XaFJ1_RS12995	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
XaFJ1_RS13000	COG4974	Belongs to the 'phage' integrase family
XaFJ1_RS13020	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
XaFJ1_RS13030	COG0525	valine-tRNA ligase activity
XaFJ1_RS13050	COG1183	phosphatidylcholine synthase activity
XaFJ1_RS13060	COG0442	prolyl-tRNA aminoacylation
XaFJ1_RS13075	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
XaFJ1_RS13080	COG1127	ABC transporter
XaFJ1_RS13085	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
XaFJ1_RS13085	COG3218	ABC-type transport auxiliary lipoprotein component
XaFJ1_RS13100	COG0644	oxidoreductase
XaFJ1_RS13100	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
XaFJ1_RS13150	COG2086	electron transfer activity
XaFJ1_RS13185	COG0438	transferase activity, transferring glycosyl groups
XaFJ1_RS13220	COG0626	cystathionine gamma-synthase activity
XaFJ1_RS13250	COG0625	glutathione transferase activity
XaFJ1_RS13260	COG0513	Belongs to the DEAD box helicase family
XaFJ1_RS13265	COG0720	synthase
XaFJ1_RS13280	COG1956	GAF domain-containing protein
XaFJ1_RS13290	COG4206	TonB-dependent receptor
XaFJ1_RS13295	COG0546	phosphoglycolate phosphatase activity
XaFJ1_RS13300	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
XaFJ1_RS13305	COG0339	signal peptide processing
XaFJ1_RS13310	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
XaFJ1_RS13330	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
XaFJ1_RS13350	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
XaFJ1_RS13370	COG3104	oligopeptide transport
XaFJ1_RS13380	COG3483	tryptophan 2,3-dioxygenase activity
XaFJ1_RS13390	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
XaFJ1_RS13395	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS13395	COG3706	GGDEF domain
XaFJ1_RS13400	COG3264	Mechanosensitive ion channel
XaFJ1_RS13400	COG1196	nuclear chromosome segregation
XaFJ1_RS13440	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
XaFJ1_RS13445	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
XaFJ1_RS13470	COG2096	Adenosyltransferase
XaFJ1_RS13485	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
XaFJ1_RS13490	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
XaFJ1_RS13500	COG2967	ApaG domain
XaFJ1_RS13505	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
XaFJ1_RS13530	COG0861	Integral membrane protein TerC family
XaFJ1_RS13535	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
XaFJ1_RS13540	COG0642	Histidine kinase
XaFJ1_RS13555	COG4181	ATPase activity
XaFJ1_RS13560	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
XaFJ1_RS13570	COG4771	TonB-dependent receptor
XaFJ1_RS13580	COG0667	Aldo Keto reductase
XaFJ1_RS13585	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
XaFJ1_RS13605	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
XaFJ1_RS13615	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
XaFJ1_RS13635	COG2226	methyltransferase
XaFJ1_RS13675	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
XaFJ1_RS13680	COG0494	nUDIX hydrolase
XaFJ1_RS13690	COG0653	protein targeting
XaFJ1_RS13695	COG0739	heme binding
XaFJ1_RS13705	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
XaFJ1_RS13720	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
XaFJ1_RS13725	COG1181	Belongs to the D-alanine--D-alanine ligase family
XaFJ1_RS13735	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
XaFJ1_RS13750	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
XaFJ1_RS13765	COG3116	cell division
XaFJ1_RS13770	COG0275	rRNA processing
XaFJ1_RS13775	COG2001	Belongs to the MraZ family
XaFJ1_RS13800	COG0277	FAD linked oxidase domain protein
XaFJ1_RS13805	COG0745	RESPONSE REGULATOR receiver
XaFJ1_RS13810	COG2205	protein histidine kinase activity
XaFJ1_RS13820	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
XaFJ1_RS13825	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
XaFJ1_RS13840	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
XaFJ1_RS13845	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
XaFJ1_RS13850	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
XaFJ1_RS13865	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
XaFJ1_RS13865	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
XaFJ1_RS13880	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
XaFJ1_RS13890	COG0488	(ABC) transporter
XaFJ1_RS13895	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
XaFJ1_RS13900	COG1490	D-aminoacyl-tRNA deacylase activity
XaFJ1_RS13945	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
XaFJ1_RS13950	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
XaFJ1_RS13950	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
XaFJ1_RS13960	COG0242	peptide deformylase activity
XaFJ1_RS13965	COG1652	LysM domain
XaFJ1_RS13970	COG0758	DNA mediated transformation
XaFJ1_RS13975	COG2922	Belongs to the Smg family
XaFJ1_RS13985	COG1714	RDD family
XaFJ1_RS13990	COG1754	DNA topoisomerase type I activity
XaFJ1_RS13990	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
XaFJ1_RS13995	COG0009	L-threonylcarbamoyladenylate synthase
XaFJ1_RS14010	COG1028	Short-chain dehydrogenase reductase Sdr
XaFJ1_RS14020	COG0616	signal peptide processing
XaFJ1_RS14025	COG0534	Mate efflux family protein
XaFJ1_RS14035	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
XaFJ1_RS14045	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
XaFJ1_RS14050	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
XaFJ1_RS14055	COG2201	protein-glutamate methylesterase activity
XaFJ1_RS14060	COG2177	Part of the ABC transporter FtsEX involved in
XaFJ1_RS14065	COG2884	Cell division ATP-binding protein ftsE
XaFJ1_RS14075	COG3118	belongs to the thioredoxin family
XaFJ1_RS14080	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
XaFJ1_RS14125	COG1518	maintenance of DNA repeat elements
XaFJ1_RS14130	COG1343	CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette
XaFJ1_RS14135	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
XaFJ1_RS14145	COG1136	(ABC) transporter
XaFJ1_RS14145	COG0577	efflux transmembrane transporter activity
XaFJ1_RS14155	COG0577	efflux transmembrane transporter activity
XaFJ1_RS14155	COG1136	(ABC) transporter
XaFJ1_RS14165	COG0577	efflux transmembrane transporter activity
XaFJ1_RS14170	COG2204	response regulator
XaFJ1_RS14175	COG4191	Histidine kinase
XaFJ1_RS14180	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
XaFJ1_RS14195	COG0355	proton-transporting ATP synthase activity, rotational mechanism
XaFJ1_RS14200	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
XaFJ1_RS14210	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
XaFJ1_RS14215	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
XaFJ1_RS14220	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
XaFJ1_RS14230	COG0356	it plays a direct role in the translocation of protons across the membrane
XaFJ1_RS14240	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
XaFJ1_RS14245	COG0508	dehydrogenase complex catalyzes the overall conversion of
XaFJ1_RS14280	COG0697	spore germination
XaFJ1_RS14285	COG1666	GTP binding
XaFJ1_RS14295	COG1187	pseudouridine synthase activity
XaFJ1_RS14340	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
XaFJ1_RS14350	COG0793	Belongs to the peptidase S41A family
XaFJ1_RS14360	COG2963	transposase activity
XaFJ1_RS14425	COG0025	NhaP-type Na H and K H
XaFJ1_RS14435	COG3384	dioxygenase
XaFJ1_RS14440	COG0583	DNA-binding transcription factor activity
XaFJ1_RS14450	COG0667	Aldo Keto reductase
XaFJ1_RS14460	COG3706	GGDEF domain
XaFJ1_RS14475	COG4774	siderophore transport
XaFJ1_RS14495	COG0531	amino acid
XaFJ1_RS14500	COG5297	Belongs to the glycosyl hydrolase family 6
XaFJ1_RS14500	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
XaFJ1_RS14510	COG5297	Belongs to the glycosyl hydrolase family 6
XaFJ1_RS14510	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
XaFJ1_RS14525	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
XaFJ1_RS14525	COG5297	Belongs to the glycosyl hydrolase family 6
XaFJ1_RS14550	COG0598	Magnesium transport protein CorA
XaFJ1_RS14555	COG1113	amino acid transport
XaFJ1_RS14560	COG0697	spore germination
XaFJ1_RS14595	COG3511	phospholipase C
XaFJ1_RS14600	COG0628	permease
XaFJ1_RS14640	COG1199	ATP-dependent helicase activity
XaFJ1_RS14645	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
XaFJ1_RS14685	COG0625	glutathione transferase activity
XaFJ1_RS14705	COG4555	ABC transporter
XaFJ1_RS14715	COG0633	Ferredoxin
XaFJ1_RS14715	COG0543	2 iron, 2 sulfur cluster binding
XaFJ1_RS14720	COG1131	(ABC) transporter
XaFJ1_RS14725	COG0842	Transport permease protein
XaFJ1_RS14740	COG1643	Atp-dependent helicase
XaFJ1_RS14765	COG1187	pseudouridine synthase activity
XaFJ1_RS14780	COG2130	NADP-dependent
XaFJ1_RS14785	COG1414	Transcriptional regulator
XaFJ1_RS14800	COG1131	(ABC) transporter
XaFJ1_RS14805	COG4771	TonB-dependent receptor
XaFJ1_RS14810	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
XaFJ1_RS14815	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
XaFJ1_RS14825	COG3485	protocatechuate 3,4-dioxygenase
XaFJ1_RS14830	COG3485	protocatechuate 3,4-dioxygenase
XaFJ1_RS14840	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
XaFJ1_RS14900	COG1022	Amp-dependent synthetase and ligase
XaFJ1_RS14905	COG1024	Enoyl-CoA hydratase
XaFJ1_RS14910	COG0659	secondary active sulfate transmembrane transporter activity
XaFJ1_RS14915	COG2199	diguanylate cyclase activity
XaFJ1_RS14985	COG0339	signal peptide processing
XaFJ1_RS15025	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
XaFJ1_RS15030	COG0318	PFAM AMP-dependent synthetase and ligase
XaFJ1_RS15045	COG0596	Alpha beta hydrolase
XaFJ1_RS15050	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
XaFJ1_RS15080	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
XaFJ1_RS15130	COG2204	response regulator
XaFJ1_RS15135	COG3852	Histidine kinase
XaFJ1_RS15140	COG0004	ammonium transporteR
XaFJ1_RS15145	COG0347	Belongs to the P(II) protein family
XaFJ1_RS15150	COG0174	glutamine synthetase
XaFJ1_RS15180	COG2050	protein possibly involved in aromatic compounds catabolism
XaFJ1_RS15185	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
XaFJ1_RS15195	COG2062	phosphohistidine phosphatase, SixA
XaFJ1_RS15235	COG2271	Major facilitator Superfamily
XaFJ1_RS15255	COG1205	dead DEAH box helicase
XaFJ1_RS15255	COG1111	helicase
XaFJ1_RS15270	COG0070	glutamate synthase
XaFJ1_RS15270	COG0067	glutamate synthase
XaFJ1_RS15270	COG0069	glutamate synthase activity
XaFJ1_RS15275	COG0493	'glutamate synthase
XaFJ1_RS15280	COG1803	Methylglyoxal synthase
XaFJ1_RS15310	COG3135	benzoate transporter
XaFJ1_RS15330	COG2951	lytic endotransglycosylase activity
XaFJ1_RS15335	COG3012	SEC-C Motif Domain Protein
XaFJ1_RS15340	COG0730	response to heat
XaFJ1_RS15370	COG0302	gtp cyclohydrolase
XaFJ1_RS15375	COG0477	Major facilitator Superfamily
XaFJ1_RS15380	COG0840	transmembrane signaling receptor activity
XaFJ1_RS15395	COG3132	Protein of unknown function, DUF480
XaFJ1_RS15400	COG0729	surface antigen
XaFJ1_RS15405	COG2911	Protein conserved in bacteria
XaFJ1_RS15410	COG0473	3-isopropylmalate dehydrogenase activity
XaFJ1_RS15430	COG1752	Esterase of the alpha-beta hydrolase superfamily
XaFJ1_RS15445	COG0861	Integral membrane protein TerC family
XaFJ1_RS15450	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
XaFJ1_RS15475	COG0531	amino acid
XaFJ1_RS15480	COG4566	intracellular signal transduction
XaFJ1_RS15485	COG4191	Histidine kinase
XaFJ1_RS15490	COG1285	pathogenesis
XaFJ1_RS15515	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
XaFJ1_RS15520	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
XaFJ1_RS15535	COG0210	DNA helicase
XaFJ1_RS15545	COG1122	ATPase activity
XaFJ1_RS15550	COG1733	regulation of RNA biosynthetic process
XaFJ1_RS15575	COG0594	ribonuclease P activity
XaFJ1_RS15580	COG0230	Belongs to the bacterial ribosomal protein bL34 family
XaFJ1_RS15720	COG3451	type IV secretory pathway VirB4