locus-tag class description IS_RS00105 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IS_RS00170 PF18053 DNA gyrase B subunit insert domain IS_RS00170 PF01751 Toprim domain IS_RS00170 PF00986 DNA gyrase B subunit, carboxyl terminus IS_RS00170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS00170 PF00204 DNA gyrase B IS_RS00215 PF01618 MotA/TolQ/ExbB proton channel family IS_RS00685 PF09369 Domain of unknown function (DUF1998) IS_RS00685 PF00271 Helicase conserved C-terminal domain IS_RS00685 PF00270 DEAD/DEAH box helicase IS_RS01000 PF00072 Response regulator receiver domain IS_RS01000 PF02954 Bacterial regulatory protein, Fis family IS_RS01000 PF00158 Sigma-54 interaction domain IS_RS01045 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IS_RS01045 PF07055 Enoyl reductase FAD binding domain IS_RS01045 PF12241 Trans-2-enoyl-CoA reductase catalytic region IS_RS01110 PF13683 Integrase core domain IS_RS01110 PF13276 HTH-like domain IS_RS01220 PF13472 GDSL-like Lipase/Acylhydrolase family IS_RS01220 PF07859 alpha/beta hydrolase fold IS_RS01265 PF00308 Bacterial dnaA protein IS_RS01265 PF08299 Bacterial dnaA protein helix-turn-helix IS_RS01265 PF11638 DnaA N-terminal domain IS_RS01270 PF02768 DNA polymerase III beta subunit, C-terminal domain IS_RS01270 PF02767 DNA polymerase III beta subunit, central domain IS_RS01270 PF00712 DNA polymerase III beta subunit, N-terminal domain IS_RS01275 PF02463 RecF/RecN/SMC N terminal domain IS_RS01280 PF00204 DNA gyrase B IS_RS01280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS01280 PF01751 Toprim domain IS_RS01280 PF18053 DNA gyrase B subunit insert domain IS_RS01280 PF00986 DNA gyrase B subunit, carboxyl terminus IS_RS01290 PF01435 Peptidase family M48 IS_RS01300 PF03544 Gram-negative bacterial TonB protein C-terminal IS_RS01305 PF01618 MotA/TolQ/ExbB proton channel family IS_RS01310 PF02472 Biopolymer transport protein ExbD/TolR IS_RS01315 PF02472 Biopolymer transport protein ExbD/TolR IS_RS01320 PF02472 Biopolymer transport protein ExbD/TolR IS_RS01330 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IS_RS01340 PF13091 PLD-like domain IS_RS01340 PF13396 Phospholipase_D-nuclease N-terminal IS_RS01355 PF04055 Radical SAM superfamily IS_RS01365 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IS_RS01380 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IS_RS01380 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IS_RS01385 PF03572 Peptidase family S41 IS_RS01385 PF13180 PDZ domain IS_RS01390 PF01551 Peptidase family M23 IS_RS01400 PF04389 Peptidase family M28 IS_RS01410 PF00150 Cellulase (glycosyl hydrolase family 5) IS_RS01415 PF00150 Cellulase (glycosyl hydrolase family 5) IS_RS01425 PF00150 Cellulase (glycosyl hydrolase family 5) IS_RS01430 PF08240 Alcohol dehydrogenase GroES-like domain IS_RS01430 PF00107 Zinc-binding dehydrogenase IS_RS01435 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS01435 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IS_RS01440 PF01493 GXGXG motif IS_RS01440 PF01645 Conserved region in glutamate synthase IS_RS01440 PF04898 Glutamate synthase central domain IS_RS01440 PF00310 Glutamine amidotransferases class-II IS_RS01470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS01470 PF03466 LysR substrate binding domain IS_RS01520 PF09369 Domain of unknown function (DUF1998) IS_RS01520 PF00271 Helicase conserved C-terminal domain IS_RS01520 PF00270 DEAD/DEAH box helicase IS_RS01525 PF03006 Haemolysin-III related IS_RS01540 PF00106 short chain dehydrogenase IS_RS01550 PF00069 Protein kinase domain IS_RS01550 PF03793 PASTA domain IS_RS01560 PF01527 Transposase IS_RS01565 PF13276 HTH-like domain IS_RS01565 PF13683 Integrase core domain IS_RS01585 PF05532 CsbD-like IS_RS01610 PF01447 Thermolysin metallopeptidase, catalytic domain IS_RS01610 PF16485 Protealysin propeptide IS_RS01610 PF02868 Thermolysin metallopeptidase, alpha-helical domain IS_RS01620 PF00293 NUDIX domain IS_RS01620 PF13344 Haloacid dehalogenase-like hydrolase IS_RS01635 PF00085 Thioredoxin IS_RS01640 PF08946 Osmosensory transporter coiled coil IS_RS01640 PF00083 Sugar (and other) transporter IS_RS01680 PF17863 AAA lid domain IS_RS01680 PF07726 ATPase family associated with various cellular activities (AAA) IS_RS01725 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IS_RS01740 PF00155 Aminotransferase class I and II IS_RS01745 PF00593 TonB dependent receptor IS_RS01745 PF07715 TonB-dependent Receptor Plug Domain IS_RS01760 PF00171 Aldehyde dehydrogenase family IS_RS01780 PF02735 Ku70/Ku80 beta-barrel domain IS_RS01785 PF01070 FMN-dependent dehydrogenase IS_RS01800 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family IS_RS01805 PF07730 Histidine kinase IS_RS01810 PF00196 Bacterial regulatory proteins, luxR family IS_RS01810 PF00072 Response regulator receiver domain IS_RS01830 PF00486 Transcriptional regulatory protein, C terminal IS_RS01830 PF18500 CadC C-terminal domain 1 IS_RS01835 PF12241 Trans-2-enoyl-CoA reductase catalytic region IS_RS01835 PF07055 Enoyl reductase FAD binding domain IS_RS01835 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IS_RS01845 PF00294 pfkB family carbohydrate kinase IS_RS01860 PF13276 HTH-like domain IS_RS01860 PF13683 Integrase core domain IS_RS01865 PF01527 Transposase IS_RS01875 PF05598 Transposase domain (DUF772) IS_RS01875 PF01609 Transposase DDE domain IS_RS01910 PF11896 Domain of unknown function (DUF3416) IS_RS01910 PF00128 Alpha amylase, catalytic domain IS_RS01915 PF00128 Alpha amylase, catalytic domain IS_RS01915 PF16657 Maltogenic Amylase, C-terminal domain IS_RS01920 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IS_RS01920 PF00128 Alpha amylase, catalytic domain IS_RS01920 PF02806 Alpha amylase, C-terminal all-beta domain IS_RS01930 PF00248 Aldo/keto reductase family IS_RS01935 PF00135 Carboxylesterase family IS_RS01940 PF13472 GDSL-like Lipase/Acylhydrolase family IS_RS01940 PF07859 alpha/beta hydrolase fold IS_RS01950 PF03480 Bacterial extracellular solute-binding protein, family 7 IS_RS01960 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IS_RS01965 PF04616 Glycosyl hydrolases family 43 IS_RS01965 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain IS_RS01970 PF00356 Bacterial regulatory proteins, lacI family IS_RS01975 PF04962 KduI/IolB family IS_RS01990 PF00657 GDSL-like Lipase/Acylhydrolase IS_RS02000 PF00351 Biopterin-dependent aromatic amino acid hydroxylase IS_RS02005 PF01037 Lrp/AsnC ligand binding domain IS_RS02010 PF07715 TonB-dependent Receptor Plug Domain IS_RS02010 PF00593 TonB dependent receptor IS_RS02010 PF07660 Secretin and TonB N terminus short domain IS_RS02015 PF01734 Patatin-like phospholipase IS_RS02020 PF01546 Peptidase family M20/M25/M40 IS_RS02020 PF07687 Peptidase dimerisation domain IS_RS02030 PF00005 ABC transporter IS_RS02045 PF00005 ABC transporter IS_RS02050 PF00528 Binding-protein-dependent transport system inner membrane component IS_RS02060 PF12867 DinB superfamily IS_RS02060 PF03781 Sulfatase-modifying factor enzyme 1 IS_RS02095 PF01883 Iron-sulfur cluster assembly protein IS_RS02095 PF10609 NUBPL iron-transfer P-loop NTPase IS_RS02110 PF13091 PLD-like domain IS_RS02115 PF03061 Thioesterase superfamily IS_RS02145 PF08240 Alcohol dehydrogenase GroES-like domain IS_RS02145 PF00107 Zinc-binding dehydrogenase IS_RS02155 PF02673 Bacitracin resistance protein BacA IS_RS02160 PF00120 Glutamine synthetase, catalytic domain IS_RS02160 PF03951 Glutamine synthetase, beta-Grasp domain IS_RS02165 PF00543 Nitrogen regulatory protein P-II IS_RS02170 PF00909 Ammonium Transporter Family IS_RS02175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS02175 PF00989 PAS fold IS_RS02175 PF00512 His Kinase A (phospho-acceptor) domain IS_RS02180 PF02954 Bacterial regulatory protein, Fis family IS_RS02180 PF00072 Response regulator receiver domain IS_RS02180 PF00158 Sigma-54 interaction domain IS_RS02185 PF00080 Copper/zinc superoxide dismutase (SODC) IS_RS02190 PF00080 Copper/zinc superoxide dismutase (SODC) IS_RS02195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IS_RS02205 PF00108 Thiolase, N-terminal domain IS_RS02205 PF02803 Thiolase, C-terminal domain IS_RS02240 PF00581 Rhodanese-like domain IS_RS02245 PF02556 Preprotein translocase subunit SecB IS_RS02250 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IS_RS02250 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IS_RS02330 PF13683 Integrase core domain IS_RS02330 PF13276 HTH-like domain IS_RS02335 PF01527 Transposase IS_RS02370 PF01527 Transposase IS_RS02380 PF00205 Thiamine pyrophosphate enzyme, central domain IS_RS02380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IS_RS02380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IS_RS02385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS02385 PF00512 His Kinase A (phospho-acceptor) domain IS_RS02390 PF00158 Sigma-54 interaction domain IS_RS02390 PF00072 Response regulator receiver domain IS_RS02390 PF02954 Bacterial regulatory protein, Fis family IS_RS02405 PF07690 Major Facilitator Superfamily IS_RS02410 PF00588 SpoU rRNA Methylase family IS_RS02425 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IS_RS02425 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IS_RS02430 PF02661 Fic/DOC family IS_RS02430 PF13784 Fic/DOC family N-terminal IS_RS02435 PF00561 alpha/beta hydrolase fold IS_RS02440 PF03692 Putative zinc- or iron-chelating domain IS_RS02445 PF00501 AMP-binding enzyme IS_RS02450 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family IS_RS02460 PF01820 D-ala D-ala ligase N-terminus IS_RS02460 PF07478 D-ala D-ala ligase C-terminus IS_RS02475 PF03109 ABC1 family IS_RS02485 PF00849 RNA pseudouridylate synthase IS_RS02495 PF00472 RF-1 domain IS_RS02505 PF01112 Asparaginase IS_RS02510 PF01432 Peptidase family M3 IS_RS02515 PF00106 short chain dehydrogenase IS_RS02520 PF12706 Beta-lactamase superfamily domain IS_RS02540 PF12833 Helix-turn-helix domain IS_RS02545 PF00999 Sodium/hydrogen exchanger family IS_RS02550 PF03466 LysR substrate binding domain IS_RS02550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS02555 PF01274 Malate synthase IS_RS02560 PF00463 Isocitrate lyase family IS_RS02565 PF00990 Diguanylate cyclase, GGDEF domain IS_RS02585 PF00326 Prolyl oligopeptidase family IS_RS02590 PF18140 Propionyl-coenzyme A carboxylase BT domain IS_RS02590 PF00364 Biotin-requiring enzyme IS_RS02590 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IS_RS02590 PF02785 Biotin carboxylase C-terminal domain IS_RS02590 PF00289 Biotin carboxylase, N-terminal domain IS_RS02595 PF01039 Carboxyl transferase domain IS_RS02600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IS_RS02600 PF02770 Acyl-CoA dehydrogenase, middle domain IS_RS02600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IS_RS02660 PF02492 CobW/HypB/UreG, nucleotide-binding domain IS_RS02660 PF07683 Cobalamin synthesis protein cobW C-terminal domain IS_RS02685 PF03969 AFG1-like ATPase IS_RS02690 PF01047 MarR family IS_RS02695 PF02566 OsmC-like protein IS_RS02715 PF16884 N-terminal domain of oxidoreductase IS_RS02715 PF00107 Zinc-binding dehydrogenase IS_RS02720 PF00248 Aldo/keto reductase family IS_RS02730 PF00849 RNA pseudouridylate synthase IS_RS02740 PF00270 DEAD/DEAH box helicase IS_RS02740 PF08482 ATP-dependent helicase C-terminal IS_RS02740 PF04408 Helicase associated domain (HA2) IS_RS02740 PF00271 Helicase conserved C-terminal domain IS_RS02750 PF07308 Protein of unknown function (DUF1456) IS_RS02755 PF00576 HIUase/Transthyretin family IS_RS02760 PF13454 FAD-NAD(P)-binding IS_RS02765 PF01014 Uricase IS_RS02765 PF09349 OHCU decarboxylase IS_RS02780 PF00266 Aminotransferase class-V IS_RS02785 PF07687 Peptidase dimerisation domain IS_RS02785 PF01546 Peptidase family M20/M25/M40 IS_RS02795 PF03466 LysR substrate binding domain IS_RS02795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS02800 PF00561 alpha/beta hydrolase fold IS_RS02815 PF01425 Amidase IS_RS02820 PF01156 Inosine-uridine preferring nucleoside hydrolase IS_RS02830 PF00860 Permease family IS_RS02835 PF00111 2Fe-2S iron-sulfur cluster binding domain IS_RS02840 PF00355 Rieske [2Fe-2S] domain IS_RS02845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS02845 PF03466 LysR substrate binding domain IS_RS02850 PF01026 TatD related DNase IS_RS02865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS02865 PF03466 LysR substrate binding domain IS_RS02870 PF07690 Major Facilitator Superfamily IS_RS02880 PF00561 alpha/beta hydrolase fold IS_RS02880 PF08386 TAP-like protein IS_RS02885 PF02146 Sir2 family IS_RS02890 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IS_RS02895 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IS_RS02895 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IS_RS02905 PF00551 Formyl transferase IS_RS02910 PF00486 Transcriptional regulatory protein, C terminal IS_RS02910 PF00072 Response regulator receiver domain IS_RS02915 PF00672 HAMP domain IS_RS02915 PF00512 His Kinase A (phospho-acceptor) domain IS_RS02915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS02920 PF00529 HlyD membrane-fusion protein of T1SS IS_RS02920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IS_RS02925 PF00873 AcrB/AcrD/AcrF family IS_RS02930 PF02321 Outer membrane efflux protein IS_RS02945 PF02677 Epoxyqueuosine reductase QueH IS_RS02950 PF03466 LysR substrate binding domain IS_RS02950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS02955 PF03358 NADPH-dependent FMN reductase IS_RS02965 PF08267 Cobalamin-independent synthase, N-terminal domain IS_RS02965 PF01717 Cobalamin-independent synthase, Catalytic domain IS_RS02970 PF03812 2-keto-3-deoxygluconate permease IS_RS02990 PF05368 NmrA-like family IS_RS02995 PF01638 HxlR-like helix-turn-helix IS_RS03020 PF13276 HTH-like domain IS_RS03020 PF13333 Integrase core domain IS_RS03020 PF00665 Integrase core domain IS_RS03035 PF13495 Phage integrase, N-terminal SAM-like domain IS_RS03035 PF00589 Phage integrase family IS_RS03040 PF00920 Dehydratase family IS_RS03060 PF00132 Bacterial transferase hexapeptide (six repeats) IS_RS03070 PF07690 Major Facilitator Superfamily IS_RS03075 PF11871 Domain of unknown function (DUF3391) IS_RS03075 PF01966 HD domain IS_RS03095 PF00171 Aldehyde dehydrogenase family IS_RS03105 PF01494 FAD binding domain IS_RS03115 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IS_RS03115 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IS_RS03120 PF00230 Major intrinsic protein IS_RS03125 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IS_RS03125 PF01266 FAD dependent oxidoreductase IS_RS03130 PF00455 DeoR C terminal sensor domain IS_RS03130 PF08220 DeoR-like helix-turn-helix domain IS_RS03135 PF00111 2Fe-2S iron-sulfur cluster binding domain IS_RS03135 PF00970 Oxidoreductase FAD-binding domain IS_RS03140 PF00355 Rieske [2Fe-2S] domain IS_RS03145 PF01144 Coenzyme A transferase IS_RS03150 PF01144 Coenzyme A transferase IS_RS03155 PF02803 Thiolase, C-terminal domain IS_RS03155 PF00108 Thiolase, N-terminal domain IS_RS03160 PF00775 Dioxygenase IS_RS03160 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal IS_RS03170 PF10397 Adenylosuccinate lyase C-terminus IS_RS03170 PF00206 Lyase IS_RS03175 PF12146 Serine aminopeptidase, S33 IS_RS03180 PF02627 Carboxymuconolactone decarboxylase family IS_RS03190 PF09339 IclR helix-turn-helix domain IS_RS03190 PF01614 Bacterial transcriptional regulator IS_RS03200 PF07859 alpha/beta hydrolase fold IS_RS03205 PF10677 Protein of unknown function (DUF2490) IS_RS03210 PF13932 GidA associated domain IS_RS03210 PF01134 Glucose inhibited division protein A IS_RS03220 PF00291 Pyridoxal-phosphate dependent enzyme IS_RS03240 PF13649 Methyltransferase domain IS_RS03245 PF00106 short chain dehydrogenase IS_RS03250 PF12697 Alpha/beta hydrolase family IS_RS03260 PF00155 Aminotransferase class I and II IS_RS03265 PF06968 Biotin and Thiamin Synthesis associated domain IS_RS03265 PF04055 Radical SAM superfamily IS_RS03275 PF01040 UbiA prenyltransferase family IS_RS03305 PF05819 NolX protein IS_RS03355 PF01313 Bacterial export proteins, family 3 IS_RS03360 PF00813 FliP family IS_RS03375 PF00771 FHIPEP family IS_RS03380 PF01312 FlhB HrpN YscU SpaS Family IS_RS03395 PF01514 Secretory protein of YscJ/FliF family IS_RS03410 PF02874 ATP synthase alpha/beta family, beta-barrel domain IS_RS03410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IS_RS03410 PF18269 T3SS EscN ATPase C-terminal domain IS_RS03420 PF01311 Bacterial export proteins, family 1 IS_RS03425 PF00263 Bacterial type II and III secretion system protein IS_RS03425 PF03958 Bacterial type II/III secretion system short domain IS_RS03440 PF01527 Transposase IS_RS03445 PF13276 HTH-like domain IS_RS03445 PF13683 Integrase core domain IS_RS03455 PF01464 Transglycosylase SLT domain IS_RS03470 PF12794 Mechanosensitive ion channel inner membrane domain 1 IS_RS03470 PF00924 Mechanosensitive ion channel IS_RS03470 PF12795 Mechanosensitive ion channel porin domain IS_RS03475 PF00884 Sulfatase IS_RS03480 PF03109 ABC1 family IS_RS03485 PF05661 Protein of unknown function (DUF808) IS_RS03490 PF00990 Diguanylate cyclase, GGDEF domain IS_RS03495 PF08323 Starch synthase catalytic domain IS_RS03495 PF00534 Glycosyl transferases group 1 IS_RS03500 PF00128 Alpha amylase, catalytic domain IS_RS03500 PF02806 Alpha amylase, C-terminal all-beta domain IS_RS03500 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IS_RS03505 PF00128 Alpha amylase, catalytic domain IS_RS03505 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IS_RS03505 PF11941 Domain of unknown function (DUF3459) IS_RS03510 PF02446 4-alpha-glucanotransferase IS_RS03515 PF00128 Alpha amylase, catalytic domain IS_RS03525 PF00128 Alpha amylase, catalytic domain IS_RS03525 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IS_RS03530 PF13460 NAD(P)H-binding IS_RS03550 PF06903 VirK protein IS_RS03555 PF02321 Outer membrane efflux protein IS_RS03570 PF00873 AcrB/AcrD/AcrF family IS_RS03585 PF00270 DEAD/DEAH box helicase IS_RS03585 PF00271 Helicase conserved C-terminal domain IS_RS03590 PF03421 YopJ Serine/Threonine acetyltransferase IS_RS03595 PF00364 Biotin-requiring enzyme IS_RS03595 PF02817 e3 binding domain IS_RS03595 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IS_RS03605 PF02779 Transketolase, pyrimidine binding domain IS_RS03605 PF02780 Transketolase, C-terminal domain IS_RS03610 PF00676 Dehydrogenase E1 component IS_RS03620 PF03301 Tryptophan 2,3-dioxygenase IS_RS03625 PF00854 POT family IS_RS03635 PF01047 MarR family IS_RS03640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IS_RS03645 PF04480 Protein of unknown function (DUF559) IS_RS03650 PF04209 homogentisate 1,2-dioxygenase IS_RS03670 PF03334 Na+/H+ antiporter subunit IS_RS03675 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) IS_RS03680 PF01899 Na+/H+ ion antiporter subunit IS_RS03685 PF00361 Proton-conducting membrane transporter IS_RS03690 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IS_RS03695 PF00361 Proton-conducting membrane transporter IS_RS03695 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IS_RS03695 PF13244 Domain of unknown function (DUF4040) IS_RS03695 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter IS_RS03710 PF02868 Thermolysin metallopeptidase, alpha-helical domain IS_RS03710 PF01447 Thermolysin metallopeptidase, catalytic domain IS_RS03710 PF07504 Fungalysin/Thermolysin Propeptide Motif IS_RS03710 PF01483 Proprotein convertase P-domain IS_RS03715 PF00182 Chitinase class I IS_RS03735 PF01259 SAICAR synthetase IS_RS03740 PF05099 Tellurite resistance protein TerB IS_RS03740 PF00226 DnaJ domain IS_RS03745 PF00834 Ribulose-phosphate 3 epimerase family IS_RS03750 PF00583 Acetyltransferase (GNAT) family IS_RS03755 PF00781 Diacylglycerol kinase catalytic domain IS_RS03760 PF04715 Anthranilate synthase component I, N terminal region IS_RS03760 PF00425 chorismate binding enzyme IS_RS03775 PF18766 SWI2/SNF2 ATPase IS_RS03775 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IS_RS03775 PF12008 Type I restriction and modification enzyme - subunit R C terminal IS_RS03780 PF01420 Type I restriction modification DNA specificity domain IS_RS03795 PF12161 HsdM N-terminal domain IS_RS03795 PF02384 N-6 DNA Methylase IS_RS03800 PF00117 Glutamine amidotransferase class-I IS_RS03810 PF00591 Glycosyl transferase family, a/b domain IS_RS03810 PF02885 Glycosyl transferase family, helical bundle domain IS_RS03815 PF00218 Indole-3-glycerol phosphate synthase IS_RS03825 PF00325 Bacterial regulatory proteins, crp family IS_RS03825 PF00027 Cyclic nucleotide-binding domain IS_RS03830 PF02675 S-adenosylmethionine decarboxylase IS_RS03835 PF00893 Small Multidrug Resistance protein IS_RS03840 PF03232 Ubiquinone biosynthesis protein COQ7 IS_RS03845 PF00572 Ribosomal protein L13 IS_RS03850 PF00380 Ribosomal protein S9/S16 IS_RS03865 PF00293 NUDIX domain IS_RS03875 PF00210 Ferritin-like domain IS_RS03880 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IS_RS03880 PF00672 HAMP domain IS_RS03880 PF01627 Hpt domain IS_RS03880 PF00072 Response regulator receiver domain IS_RS03880 PF00512 His Kinase A (phospho-acceptor) domain IS_RS03880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS03885 PF00072 Response regulator receiver domain IS_RS03885 PF00486 Transcriptional regulatory protein, C terminal IS_RS03905 PF01521 Iron-sulphur cluster biosynthesis IS_RS03915 PF09297 NADH pyrophosphatase zinc ribbon domain IS_RS03915 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain IS_RS03915 PF00293 NUDIX domain IS_RS03920 PF17113 Regulatory signalling modulator protein AmpE IS_RS03920 PF03186 CobD/Cbib protein IS_RS03940 PF03466 LysR substrate binding domain IS_RS03940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS03945 PF07690 Major Facilitator Superfamily IS_RS03950 PF12805 FUSC-like inner membrane protein yccS IS_RS03955 PF02843 Phosphoribosylglycinamide synthetase, C domain IS_RS03955 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IS_RS03955 PF02844 Phosphoribosylglycinamide synthetase, N domain IS_RS03965 PF01808 AICARFT/IMPCHase bienzyme IS_RS03965 PF02142 MGS-like domain IS_RS03970 PF01066 CDP-alcohol phosphatidyltransferase IS_RS03975 PF12146 Serine aminopeptidase, S33 IS_RS03975 PF12147 Putative methyltransferase IS_RS03980 PF00782 Dual specificity phosphatase, catalytic domain IS_RS04010 PF02954 Bacterial regulatory protein, Fis family IS_RS04025 PF01381 Helix-turn-helix IS_RS04055 PF02785 Biotin carboxylase C-terminal domain IS_RS04055 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IS_RS04055 PF00289 Biotin carboxylase, N-terminal domain IS_RS04065 PF00364 Biotin-requiring enzyme IS_RS04070 PF01220 Dehydroquinase class II IS_RS04075 PF11412 Disulphide bond corrector protein DsbC IS_RS04075 PF02683 Cytochrome C biogenesis protein transmembrane region IS_RS04080 PF03091 CutA1 divalent ion tolerance protein IS_RS04085 PF04231 Endonuclease I IS_RS04090 PF00166 Chaperonin 10 Kd subunit IS_RS04095 PF00118 TCP-1/cpn60 chaperonin family IS_RS04105 PF00593 TonB dependent receptor IS_RS04105 PF07715 TonB-dependent Receptor Plug Domain IS_RS04110 PF00793 DAHP synthetase I family IS_RS04135 PF08450 SMP-30/Gluconolactonase/LRE-like region IS_RS04145 PF08335 GlnD PII-uridylyltransferase IS_RS04145 PF03710 Glutamate-ammonia ligase adenylyltransferase IS_RS04150 PF02592 Putative vitamin uptake transporter IS_RS04180 PF00881 Nitroreductase family IS_RS04185 PF04264 YceI-like domain IS_RS04215 PF16957 Malonate decarboxylase, alpha subunit, transporter IS_RS04220 PF06857 Malonate decarboxylase delta subunit (MdcD) IS_RS04225 PF01039 Carboxyl transferase domain IS_RS04235 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG IS_RS04240 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase IS_RS04245 PF00698 Acyl transferase domain IS_RS04255 PF07729 FCD domain IS_RS04255 PF00392 Bacterial regulatory proteins, gntR family IS_RS04260 PF13419 Haloacid dehalogenase-like hydrolase IS_RS04290 PF07745 Glycosyl hydrolase family 53 IS_RS04295 PF17831 Pyruvate dehydrogenase E1 component middle domain IS_RS04295 PF00456 Transketolase, thiamine diphosphate binding domain IS_RS04300 PF00004 ATPase family associated with various cellular activities (AAA) IS_RS04325 PF13333 Integrase core domain IS_RS04325 PF00665 Integrase core domain IS_RS04325 PF13276 HTH-like domain IS_RS04330 PF01527 Transposase IS_RS04335 PF01527 Transposase IS_RS04345 PF05598 Transposase domain (DUF772) IS_RS04345 PF01609 Transposase DDE domain IS_RS04365 PF13276 HTH-like domain IS_RS04365 PF13683 Integrase core domain IS_RS04370 PF01527 Transposase IS_RS04375 PF00106 short chain dehydrogenase IS_RS04415 PF00106 short chain dehydrogenase IS_RS04425 PF13409 Glutathione S-transferase, N-terminal domain IS_RS04465 PF07759 Protein of unknown function (DUF1615) IS_RS04470 PF00990 Diguanylate cyclase, GGDEF domain IS_RS04475 PF02082 Transcriptional regulator IS_RS04480 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS04500 PF00892 EamA-like transporter family IS_RS04505 PF00497 Bacterial extracellular solute-binding proteins, family 3 IS_RS04515 PF00324 Amino acid permease IS_RS04525 PF01544 CorA-like Mg2+ transporter protein IS_RS04535 PF01204 Trehalase IS_RS04545 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IS_RS04545 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IS_RS04565 PF03707 Bacterial signalling protein N terminal repeat IS_RS04565 PF00990 Diguanylate cyclase, GGDEF domain IS_RS04565 PF00563 EAL domain IS_RS04570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS04570 PF02203 Tar ligand binding domain homologue IS_RS04570 PF00672 HAMP domain IS_RS04575 PF00553 Cellulose binding domain IS_RS04575 PF00150 Cellulase (glycosyl hydrolase family 5) IS_RS04580 PF00916 Sulfate permease family IS_RS04580 PF01740 STAS domain IS_RS04585 PF00990 Diguanylate cyclase, GGDEF domain IS_RS04595 PF13632 Glycosyl transferase family group 2 IS_RS04605 PF06580 Histidine kinase IS_RS04605 PF07694 5TMR of 5TMR-LYT IS_RS04610 PF04397 LytTr DNA-binding domain IS_RS04610 PF00072 Response regulator receiver domain IS_RS04615 PF03900 Porphobilinogen deaminase, C-terminal domain IS_RS04615 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IS_RS04650 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IS_RS04650 PF00326 Prolyl oligopeptidase family IS_RS04655 PF00155 Aminotransferase class I and II IS_RS04660 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IS_RS04660 PF00326 Prolyl oligopeptidase family IS_RS04665 PF04304 Protein of unknown function (DUF454) IS_RS04675 PF01678 Diaminopimelate epimerase IS_RS04685 PF00589 Phage integrase family IS_RS04685 PF02899 Phage integrase, N-terminal SAM-like domain IS_RS04690 PF00227 Proteasome subunit IS_RS04695 PF10431 C-terminal, D2-small domain, of ClpB protein IS_RS04695 PF00004 ATPase family associated with various cellular activities (AAA) IS_RS04695 PF07724 AAA domain (Cdc48 subfamily) IS_RS04705 PF13673 Acetyltransferase (GNAT) domain IS_RS04710 PF13533 Biotin-lipoyl like IS_RS04720 PF01209 ubiE/COQ5 methyltransferase family IS_RS04725 PF00990 Diguanylate cyclase, GGDEF domain IS_RS04725 PF03707 Bacterial signalling protein N terminal repeat IS_RS04725 PF00563 EAL domain IS_RS04730 PF11838 ERAP1-like C-terminal domain IS_RS04730 PF01433 Peptidase family M1 domain IS_RS04755 PF00665 Integrase core domain IS_RS04755 PF13276 HTH-like domain IS_RS04755 PF13333 Integrase core domain IS_RS04790 PF00107 Zinc-binding dehydrogenase IS_RS04790 PF08240 Alcohol dehydrogenase GroES-like domain IS_RS04800 PF01590 GAF domain IS_RS04800 PF02954 Bacterial regulatory protein, Fis family IS_RS04800 PF00158 Sigma-54 interaction domain IS_RS04805 PF00294 pfkB family carbohydrate kinase IS_RS04815 PF04085 rod shape-determining protein MreC IS_RS04825 PF03717 Penicillin-binding Protein dimerisation domain IS_RS04825 PF00905 Penicillin binding protein transpeptidase domain IS_RS04830 PF01098 Cell cycle protein IS_RS04835 PF00295 Glycosyl hydrolases family 28 IS_RS04840 PF13406 Transglycosylase SLT domain IS_RS04845 PF05036 Sporulation related domain IS_RS04845 PF03330 Lytic transglycolase IS_RS04850 PF00768 D-alanyl-D-alanine carboxypeptidase IS_RS04850 PF07943 Penicillin-binding protein 5, C-terminal domain IS_RS04860 PF04359 Protein of unknown function (DUF493) IS_RS04865 PF03099 Biotin/lipoate A/B protein ligase family IS_RS04870 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IS_RS04870 PF04055 Radical SAM superfamily IS_RS04875 PF17804 Tail specific protease N-terminal domain IS_RS04875 PF11818 C-terminal domain of tail specific protease (DUF3340) IS_RS04875 PF00595 PDZ domain IS_RS04875 PF03572 Peptidase family S41 IS_RS04885 PF03466 LysR substrate binding domain IS_RS04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS04895 PF01467 Cytidylyltransferase-like IS_RS04895 PF00293 NUDIX domain IS_RS04930 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IS_RS04930 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain IS_RS04935 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IS_RS04935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IS_RS04940 PF04972 BON domain IS_RS04945 PF00360 Phytochrome region IS_RS04945 PF08446 PAS fold IS_RS04945 PF01590 GAF domain IS_RS04945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS04945 PF00512 His Kinase A (phospho-acceptor) domain IS_RS04950 PF00072 Response regulator receiver domain IS_RS04955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS04955 PF00512 His Kinase A (phospho-acceptor) domain IS_RS04960 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IS_RS04965 PF00106 short chain dehydrogenase IS_RS05005 PF00263 Bacterial type II and III secretion system protein IS_RS05005 PF03958 Bacterial type II/III secretion system short domain IS_RS05010 PF00437 Type II/IV secretion system protein IS_RS05015 PF00482 Type II secretion system (T2SS), protein F IS_RS05020 PF07963 Prokaryotic N-terminal methylation motif IS_RS05020 PF08334 Type II secretion system (T2SS), protein G IS_RS05025 PF07963 Prokaryotic N-terminal methylation motif IS_RS05025 PF12019 Type II transport protein GspH IS_RS05030 PF07963 Prokaryotic N-terminal methylation motif IS_RS05030 PF02501 Type II secretion system (T2SS), protein I IS_RS05035 PF07963 Prokaryotic N-terminal methylation motif IS_RS05035 PF11612 Type II secretion system (T2SS), protein J IS_RS05040 PF03934 Type II secretion system (T2SS), protein K IS_RS05060 PF07702 UTRA domain IS_RS05060 PF00392 Bacterial regulatory proteins, gntR family IS_RS05065 PF07690 Major Facilitator Superfamily IS_RS05070 PF00356 Bacterial regulatory proteins, lacI family IS_RS05075 PF01380 SIS domain IS_RS05080 PF01979 Amidohydrolase family IS_RS05090 PF01966 HD domain IS_RS05090 PF12627 Probable RNA and SrmB- binding site of polymerase A IS_RS05090 PF01743 Poly A polymerase head domain IS_RS05095 PF05199 GMC oxidoreductase IS_RS05095 PF00732 GMC oxidoreductase IS_RS05100 PF00171 Aldehyde dehydrogenase family IS_RS05105 PF02028 BCCT, betaine/carnitine/choline family transporter IS_RS05115 PF01323 DSBA-like thioredoxin domain IS_RS05125 PF00034 Cytochrome c IS_RS05130 PF01926 50S ribosome-binding GTPase IS_RS05135 PF04107 Glutamate-cysteine ligase family 2(GCS2) IS_RS05140 PF00512 His Kinase A (phospho-acceptor) domain IS_RS05140 PF00672 HAMP domain IS_RS05140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS05145 PF00072 Response regulator receiver domain IS_RS05145 PF00486 Transcriptional regulatory protein, C terminal IS_RS05160 PF02583 Metal-sensitive transcriptional repressor IS_RS05165 PF00107 Zinc-binding dehydrogenase IS_RS05165 PF08240 Alcohol dehydrogenase GroES-like domain IS_RS05170 PF04828 Glutathione-dependent formaldehyde-activating enzyme IS_RS05175 PF00756 Putative esterase IS_RS05185 PF00005 ABC transporter IS_RS05185 PF12848 ABC transporter IS_RS05195 PF00464 Serine hydroxymethyltransferase IS_RS05205 PF03477 ATP cone domain IS_RS05215 PF01872 RibD C-terminal domain IS_RS05215 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IS_RS05225 PF00677 Lumazine binding domain IS_RS05230 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IS_RS05230 PF00925 GTP cyclohydrolase II IS_RS05235 PF00885 6,7-dimethyl-8-ribityllumazine synthase IS_RS05240 PF01029 NusB family IS_RS05245 PF02769 AIR synthase related protein, C-terminal domain IS_RS05245 PF00586 AIR synthase related protein, N-terminal domain IS_RS05265 PF03814 Potassium-transporting ATPase A subunit IS_RS05275 PF02669 K+-transporting ATPase, c chain IS_RS05280 PF02702 Osmosensitive K+ channel His kinase sensor domain IS_RS05280 PF00512 His Kinase A (phospho-acceptor) domain IS_RS05280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS05280 PF13492 GAF domain IS_RS05280 PF13493 Domain of unknown function (DUF4118) IS_RS05285 PF00072 Response regulator receiver domain IS_RS05285 PF00486 Transcriptional regulatory protein, C terminal IS_RS05295 PF01565 FAD binding domain IS_RS05295 PF02913 FAD linked oxidases, C-terminal domain IS_RS05300 PF04307 LexA-binding, inner membrane-associated putative hydrolase IS_RS05305 PF02021 Uncharacterised protein family UPF0102 IS_RS05315 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IS_RS05335 PF02381 MraZ protein, putative antitoxin-like IS_RS05340 PF01795 MraW methylase family IS_RS05345 PF04999 Cell division protein FtsL IS_RS05355 PF03717 Penicillin-binding Protein dimerisation domain IS_RS05355 PF00905 Penicillin binding protein transpeptidase domain IS_RS05360 PF02875 Mur ligase family, glutamate ligase domain IS_RS05360 PF01225 Mur ligase family, catalytic domain IS_RS05360 PF08245 Mur ligase middle domain IS_RS05365 PF02875 Mur ligase family, glutamate ligase domain IS_RS05365 PF08245 Mur ligase middle domain IS_RS05365 PF01225 Mur ligase family, catalytic domain IS_RS05370 PF00953 Glycosyl transferase family 4 IS_RS05375 PF01098 Cell cycle protein IS_RS05380 PF04101 Glycosyltransferase family 28 C-terminal domain IS_RS05380 PF03033 Glycosyltransferase family 28 N-terminal domain IS_RS05385 PF01225 Mur ligase family, catalytic domain IS_RS05385 PF02875 Mur ligase family, glutamate ligase domain IS_RS05385 PF08245 Mur ligase middle domain IS_RS05390 PF07478 D-ala D-ala ligase C-terminus IS_RS05390 PF01820 D-ala D-ala ligase N-terminus IS_RS05395 PF08478 POTRA domain, FtsQ-type IS_RS05395 PF03799 Cell division protein FtsQ IS_RS05400 PF02491 SHS2 domain inserted in FTSA IS_RS05405 PF00091 Tubulin/FtsZ family, GTPase domain IS_RS05405 PF12327 FtsZ family, C-terminal domain IS_RS05410 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IS_RS05420 PF01551 Peptidase family M23 IS_RS05420 PF01476 LysM domain IS_RS05420 PF08525 Opacity-associated protein A N-terminal motif IS_RS05425 PF02810 SEC-C motif IS_RS05425 PF07517 SecA DEAD-like domain IS_RS05425 PF01043 SecA preprotein cross-linking domain IS_RS05425 PF07516 SecA Wing and Scaffold domain IS_RS05430 PF00293 NUDIX domain IS_RS05440 PF02219 Methylenetetrahydrofolate reductase IS_RS05450 PF00550 Phosphopantetheine attachment site IS_RS05450 PF08240 Alcohol dehydrogenase GroES-like domain IS_RS05450 PF00107 Zinc-binding dehydrogenase IS_RS05450 PF16197 Ketoacyl-synthetase C-terminal extension IS_RS05450 PF00109 Beta-ketoacyl synthase, N-terminal domain IS_RS05450 PF02801 Beta-ketoacyl synthase, C-terminal domain IS_RS05450 PF00698 Acyl transferase domain IS_RS05450 PF08659 KR domain IS_RS05450 PF14765 Polyketide synthase dehydratase IS_RS05455 PF09286 Pro-kumamolisin, activation domain IS_RS05455 PF00082 Subtilase family IS_RS05470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IS_RS05505 PF13649 Methyltransferase domain IS_RS05510 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IS_RS05510 PF05221 S-adenosyl-L-homocysteine hydrolase IS_RS05520 PF00311 Phosphoenolpyruvate carboxylase IS_RS05540 PF01389 OmpA-like transmembrane domain IS_RS05540 PF00691 OmpA family IS_RS05555 PF00328 Histidine phosphatase superfamily (branch 2) IS_RS05560 PF02773 S-adenosylmethionine synthetase, C-terminal domain IS_RS05560 PF00438 S-adenosylmethionine synthetase, N-terminal domain IS_RS05560 PF02772 S-adenosylmethionine synthetase, central domain IS_RS05570 PF13649 Methyltransferase domain IS_RS05575 PF01207 Dihydrouridine synthase (Dus) IS_RS05585 PF00294 pfkB family carbohydrate kinase IS_RS05590 PF01773 Na+ dependent nucleoside transporter N-terminus IS_RS05590 PF07670 Nucleoside recognition IS_RS05590 PF07662 Na+ dependent nucleoside transporter C-terminus IS_RS05595 PF00248 Aldo/keto reductase family IS_RS05605 PF00593 TonB dependent receptor IS_RS05605 PF07715 TonB-dependent Receptor Plug Domain IS_RS05625 PF00528 Binding-protein-dependent transport system inner membrane component IS_RS05630 PF00005 ABC transporter IS_RS05640 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IS_RS05650 PF00005 ABC transporter IS_RS05655 PF13472 GDSL-like Lipase/Acylhydrolase family IS_RS05660 PF00072 Response regulator receiver domain IS_RS05660 PF00486 Transcriptional regulatory protein, C terminal IS_RS05665 PF08521 Two-component sensor kinase N-terminal IS_RS05665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS05665 PF00512 His Kinase A (phospho-acceptor) domain IS_RS05675 PF01219 Prokaryotic diacylglycerol kinase IS_RS05695 PF01790 Prolipoprotein diacylglyceryl transferase IS_RS05700 PF00303 Thymidylate synthase IS_RS05710 PF00186 Dihydrofolate reductase IS_RS05715 PF00149 Calcineurin-like phosphoesterase IS_RS05720 PF04379 ApaG domain IS_RS05725 PF00398 Ribosomal RNA adenine dimethylase IS_RS05730 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IS_RS05735 PF09312 SurA N-terminal domain IS_RS05735 PF00639 PPIC-type PPIASE domain IS_RS05740 PF03968 OstA-like protein IS_RS05740 PF04453 LPS transport system D IS_RS05745 PF00850 Histone deacetylase domain IS_RS05750 PF01923 Cobalamin adenosyltransferase IS_RS05760 PF01494 FAD binding domain IS_RS05765 PF01494 FAD binding domain IS_RS05785 PF00392 Bacterial regulatory proteins, gntR family IS_RS05785 PF07729 FCD domain IS_RS05790 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IS_RS05795 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit IS_RS05795 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IS_RS05800 PF03466 LysR substrate binding domain IS_RS05800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS05805 PF13193 AMP-binding enzyme C-terminal domain IS_RS05805 PF00501 AMP-binding enzyme IS_RS05810 PF00171 Aldehyde dehydrogenase family IS_RS05815 PF00378 Enoyl-CoA hydratase/isomerase IS_RS05835 PF08450 SMP-30/Gluconolactonase/LRE-like region IS_RS05840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IS_RS05840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IS_RS05845 PF01728 FtsJ-like methyltransferase IS_RS05845 PF18125 RlmM ferredoxin-like domain IS_RS05870 PF00892 EamA-like transporter family IS_RS05880 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IS_RS05880 PF00749 tRNA synthetases class I (E and Q), catalytic domain IS_RS05895 PF00990 Diguanylate cyclase, GGDEF domain IS_RS05895 PF00072 Response regulator receiver domain IS_RS05900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS05900 PF17149 Periplasmic sensor domain found in signal transduction proteins IS_RS05900 PF00672 HAMP domain IS_RS05900 PF00512 His Kinase A (phospho-acceptor) domain IS_RS05900 PF00072 Response regulator receiver domain IS_RS05900 PF01627 Hpt domain IS_RS05905 PF00072 Response regulator receiver domain IS_RS05905 PF00196 Bacterial regulatory proteins, luxR family IS_RS05915 PF01625 Peptide methionine sulfoxide reductase IS_RS05925 PF00923 Transaldolase/Fructose-6-phosphate aldolase IS_RS05930 PF01272 Transcription elongation factor, GreA/GreB, C-term IS_RS05930 PF14760 Rnk N-terminus IS_RS05935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS05935 PF03466 LysR substrate binding domain IS_RS05940 PF13192 Thioredoxin domain IS_RS05940 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS05945 PF00578 AhpC/TSA family IS_RS05945 PF10417 C-terminal domain of 1-Cys peroxiredoxin IS_RS05950 PF17827 PrmC N-terminal domain IS_RS05950 PF05175 Methyltransferase small domain IS_RS05955 PF00561 alpha/beta hydrolase fold IS_RS05965 PF00293 NUDIX domain IS_RS05970 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IS_RS05970 PF00476 DNA polymerase family A IS_RS05970 PF01612 3'-5' exonuclease IS_RS05970 PF01367 5'-3' exonuclease, C-terminal SAM fold IS_RS05985 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IS_RS05985 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IS_RS05985 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IS_RS06005 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IS_RS06010 PF02233 NAD(P) transhydrogenase beta subunit IS_RS06025 PF01063 Amino-transferase class IV IS_RS06030 PF00082 Subtilase family IS_RS06030 PF04151 Bacterial pre-peptidase C-terminal domain IS_RS06035 PF04151 Bacterial pre-peptidase C-terminal domain IS_RS06035 PF00082 Subtilase family IS_RS06040 PF00082 Subtilase family IS_RS06040 PF04151 Bacterial pre-peptidase C-terminal domain IS_RS06045 PF04073 Aminoacyl-tRNA editing domain IS_RS06055 PF17189 Glycosyl hydrolase family 30 beta sandwich domain IS_RS06055 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain IS_RS06065 PF03358 NADPH-dependent FMN reductase IS_RS06070 PF03631 Virulence factor BrkB IS_RS06075 PF08534 Redoxin IS_RS06080 PF00708 Acylphosphatase IS_RS06090 PF03976 Polyphosphate kinase 2 (PPK2) IS_RS06095 PF00994 Probable molybdopterin binding domain IS_RS06105 PF03462 PCRF domain IS_RS06105 PF00472 RF-1 domain IS_RS06110 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IS_RS06110 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IS_RS06110 PF01488 Shikimate / quinate 5-dehydrogenase IS_RS06120 PF03550 Outer membrane lipoprotein LolB IS_RS06125 PF00288 GHMP kinases N terminal domain IS_RS06125 PF08544 GHMP kinases C terminal IS_RS06135 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IS_RS06135 PF14572 Phosphoribosyl synthetase-associated domain IS_RS06140 PF01386 Ribosomal L25p family IS_RS06140 PF14693 Ribosomal protein TL5, C-terminal domain IS_RS06145 PF01195 Peptidyl-tRNA hydrolase IS_RS06150 PF01926 50S ribosome-binding GTPase IS_RS06150 PF06071 Protein of unknown function (DUF933) IS_RS06170 PF03144 Elongation factor Tu domain 2 IS_RS06170 PF00009 Elongation factor Tu GTP binding domain IS_RS06170 PF03143 Elongation factor Tu C-terminal domain IS_RS06180 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IS_RS06185 PF02357 Transcription termination factor nusG IS_RS06185 PF00467 KOW motif IS_RS06190 PF03946 Ribosomal protein L11, N-terminal domain IS_RS06190 PF00298 Ribosomal protein L11, RNA binding domain IS_RS06195 PF00687 Ribosomal protein L1p/L10e family IS_RS06200 PF00466 Ribosomal protein L10 IS_RS06205 PF00542 Ribosomal protein L7/L12 C-terminal domain IS_RS06205 PF16320 Ribosomal protein L7/L12 dimerisation domain IS_RS06210 PF10385 RNA polymerase beta subunit external 1 domain IS_RS06210 PF04563 RNA polymerase beta subunit IS_RS06210 PF04561 RNA polymerase Rpb2, domain 2 IS_RS06210 PF04565 RNA polymerase Rpb2, domain 3 IS_RS06210 PF00562 RNA polymerase Rpb2, domain 6 IS_RS06210 PF04560 RNA polymerase Rpb2, domain 7 IS_RS06215 PF05000 RNA polymerase Rpb1, domain 4 IS_RS06215 PF04998 RNA polymerase Rpb1, domain 5 IS_RS06215 PF04997 RNA polymerase Rpb1, domain 1 IS_RS06215 PF04983 RNA polymerase Rpb1, domain 3 IS_RS06215 PF00623 RNA polymerase Rpb1, domain 2 IS_RS06220 PF00164 Ribosomal protein S12/S23 IS_RS06225 PF00177 Ribosomal protein S7p/S5e IS_RS06230 PF03764 Elongation factor G, domain IV IS_RS06230 PF00009 Elongation factor Tu GTP binding domain IS_RS06230 PF14492 Elongation Factor G, domain II IS_RS06230 PF00679 Elongation factor G C-terminus IS_RS06230 PF03144 Elongation factor Tu domain 2 IS_RS06235 PF03143 Elongation factor Tu C-terminal domain IS_RS06235 PF03144 Elongation factor Tu domain 2 IS_RS06235 PF00009 Elongation factor Tu GTP binding domain IS_RS06245 PF00338 Ribosomal protein S10p/S20e IS_RS06250 PF00297 Ribosomal protein L3 IS_RS06255 PF00573 Ribosomal protein L4/L1 family IS_RS06260 PF00276 Ribosomal protein L23 IS_RS06265 PF03947 Ribosomal Proteins L2, C-terminal domain IS_RS06265 PF00181 Ribosomal Proteins L2, RNA binding domain IS_RS06270 PF00203 Ribosomal protein S19 IS_RS06275 PF00237 Ribosomal protein L22p/L17e IS_RS06280 PF00189 Ribosomal protein S3, C-terminal domain IS_RS06280 PF07650 KH domain IS_RS06285 PF00252 Ribosomal protein L16p/L10e IS_RS06290 PF00831 Ribosomal L29 protein IS_RS06295 PF00366 Ribosomal protein S17 IS_RS06300 PF00238 Ribosomal protein L14p/L23e IS_RS06305 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IS_RS06305 PF00467 KOW motif IS_RS06310 PF00281 Ribosomal protein L5 IS_RS06310 PF00673 ribosomal L5P family C-terminus IS_RS06315 PF00253 Ribosomal protein S14p/S29e IS_RS06320 PF00410 Ribosomal protein S8 IS_RS06325 PF00347 Ribosomal protein L6 IS_RS06330 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IS_RS06335 PF03719 Ribosomal protein S5, C-terminal domain IS_RS06335 PF00333 Ribosomal protein S5, N-terminal domain IS_RS06340 PF00327 Ribosomal protein L30p/L7e IS_RS06345 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IS_RS06350 PF00344 SecY translocase IS_RS06355 PF00416 Ribosomal protein S13/S18 IS_RS06360 PF00411 Ribosomal protein S11 IS_RS06365 PF00163 Ribosomal protein S4/S9 N-terminal domain IS_RS06365 PF01479 S4 domain IS_RS06370 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IS_RS06370 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IS_RS06370 PF01000 RNA polymerase Rpb3/RpoA insert domain IS_RS06375 PF01196 Ribosomal protein L17 IS_RS06380 PF02600 Disulfide bond formation protein DsbB IS_RS06400 PF01474 Class-II DAHP synthetase family IS_RS06410 PF01425 Amidase IS_RS06420 PF00009 Elongation factor Tu GTP binding domain IS_RS06420 PF03144 Elongation factor Tu domain 2 IS_RS06420 PF00679 Elongation factor G C-terminus IS_RS06425 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IS_RS06430 PF00056 lactate/malate dehydrogenase, NAD binding domain IS_RS06430 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IS_RS06435 PF00043 Glutathione S-transferase, C-terminal domain IS_RS06435 PF02798 Glutathione S-transferase, N-terminal domain IS_RS06445 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS06445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IS_RS06455 PF00691 OmpA family IS_RS06455 PF00223 Photosystem I psaA/psaB protein IS_RS06465 PF00849 RNA pseudouridylate synthase IS_RS06475 PF00155 Aminotransferase class I and II IS_RS06485 PF00528 Binding-protein-dependent transport system inner membrane component IS_RS06490 PF00528 Binding-protein-dependent transport system inner membrane component IS_RS06495 PF00005 ABC transporter IS_RS06495 PF12857 TOBE-like domain IS_RS06495 PF17850 CysA C-terminal regulatory domain IS_RS06505 PF00107 Zinc-binding dehydrogenase IS_RS06505 PF08240 Alcohol dehydrogenase GroES-like domain IS_RS06515 PF04185 Phosphoesterase family IS_RS06515 PF05506 Domain of unknown function (DUF756) IS_RS06520 PF10459 Peptidase S46 IS_RS06525 PF00300 Histidine phosphatase superfamily (branch 1) IS_RS06530 PF02875 Mur ligase family, glutamate ligase domain IS_RS06530 PF08245 Mur ligase middle domain IS_RS06545 PF00156 Phosphoribosyl transferase domain IS_RS06550 PF04305 Protein of unknown function (DUF455) IS_RS06565 PF00149 Calcineurin-like phosphoesterase IS_RS06570 PF01569 PAP2 superfamily IS_RS06575 PF13439 Glycosyltransferase Family 4 IS_RS06575 PF00534 Glycosyl transferases group 1 IS_RS06580 PF02541 Ppx/GppA phosphatase family IS_RS06585 PF13090 Polyphosphate kinase C-terminal domain 2 IS_RS06585 PF17941 Polyphosphate kinase C-terminal domain 1 IS_RS06585 PF02503 Polyphosphate kinase middle domain IS_RS06585 PF13089 Polyphosphate kinase N-terminal domain IS_RS06590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS06590 PF00512 His Kinase A (phospho-acceptor) domain IS_RS06590 PF11808 Phosphate regulon sensor protein PhoR IS_RS06590 PF00989 PAS fold IS_RS06595 PF00072 Response regulator receiver domain IS_RS06595 PF00486 Transcriptional regulatory protein, C terminal IS_RS06600 PF01435 Peptidase family M48 IS_RS06600 PF13181 Tetratricopeptide repeat IS_RS06605 PF00462 Glutaredoxin IS_RS06615 PF18324 Hypothetical protein TT1725 IS_RS06615 PF00180 Isocitrate/isopropylmalate dehydrogenase IS_RS06645 PF00512 His Kinase A (phospho-acceptor) domain IS_RS06645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS06645 PF00989 PAS fold IS_RS06655 PF05698 Bacterial trigger factor protein (TF) C-terminus IS_RS06655 PF05697 Bacterial trigger factor protein (TF) IS_RS06660 PF00574 Clp protease IS_RS06665 PF07724 AAA domain (Cdc48 subfamily) IS_RS06665 PF06689 ClpX C4-type zinc finger IS_RS06665 PF10431 C-terminal, D2-small domain, of ClpB protein IS_RS06670 PF02190 ATP-dependent protease La (LON) substrate-binding domain IS_RS06670 PF05362 Lon protease (S16) C-terminal proteolytic domain IS_RS06670 PF00004 ATPase family associated with various cellular activities (AAA) IS_RS06675 PF00216 Bacterial DNA-binding protein IS_RS06700 PF05257 CHAP domain IS_RS06700 PF01476 LysM domain IS_RS06705 PF00753 Metallo-beta-lactamase superfamily IS_RS06705 PF16123 Hydroxyacylglutathione hydrolase C-terminus IS_RS06715 PF00075 RNase H IS_RS06720 PF00929 Exonuclease IS_RS06755 PF01527 Transposase IS_RS06760 PF13276 HTH-like domain IS_RS06760 PF13683 Integrase core domain IS_RS06780 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IS_RS06790 PF00753 Metallo-beta-lactamase superfamily IS_RS06790 PF12706 Beta-lactamase superfamily domain IS_RS06795 PF06463 Molybdenum Cofactor Synthesis C IS_RS06795 PF04055 Radical SAM superfamily IS_RS06805 PF01967 MoaC family IS_RS06810 PF02597 ThiS family IS_RS06815 PF02391 MoaE protein IS_RS06840 PF01527 Transposase IS_RS06845 PF13276 HTH-like domain IS_RS06845 PF13683 Integrase core domain IS_RS06870 PF13333 Integrase core domain IS_RS06870 PF13276 HTH-like domain IS_RS06870 PF00665 Integrase core domain IS_RS06915 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IS_RS06915 PF12170 DNA polymerase III tau subunit V interacting with alpha IS_RS06915 PF12169 DNA polymerase III subunits gamma and tau domain III IS_RS06920 PF02575 YbaB/EbfC DNA-binding family IS_RS06925 PF13662 Toprim domain IS_RS06925 PF02132 RecR protein IS_RS06930 PF01230 HIT domain IS_RS06940 PF13559 Domain of unknown function (DUF4129) IS_RS06940 PF11992 Domain of unknown function (DUF3488) IS_RS06940 PF01841 Transglutaminase-like superfamily IS_RS06950 PF07726 ATPase family associated with various cellular activities (AAA) IS_RS06950 PF17863 AAA lid domain IS_RS06960 PF02545 Maf-like protein IS_RS06965 PF01527 Transposase IS_RS06970 PF13683 Integrase core domain IS_RS06970 PF13276 HTH-like domain IS_RS06975 PF02545 Maf-like protein IS_RS06985 PF01783 Ribosomal L32p protein family IS_RS06990 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IS_RS06990 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IS_RS07000 PF00698 Acyl transferase domain IS_RS07010 PF00550 Phosphopantetheine attachment site IS_RS07015 PF00109 Beta-ketoacyl synthase, N-terminal domain IS_RS07015 PF02801 Beta-ketoacyl synthase, C-terminal domain IS_RS07020 PF00425 chorismate binding enzyme IS_RS07020 PF04715 Anthranilate synthase component I, N terminal region IS_RS07025 PF02618 YceG-like family IS_RS07030 PF09115 DNA polymerase III, delta subunit, C terminal IS_RS07055 PF02954 Bacterial regulatory protein, Fis family IS_RS07055 PF00158 Sigma-54 interaction domain IS_RS07055 PF06506 Propionate catabolism activator IS_RS07065 PF00285 Citrate synthase, C-terminal domain IS_RS07070 PF00694 Aconitase C-terminal domain IS_RS07070 PF00330 Aconitase family (aconitate hydratase) IS_RS07080 PF04303 PrpF protein IS_RS07085 PF00593 TonB dependent receptor IS_RS07085 PF07715 TonB-dependent Receptor Plug Domain IS_RS07095 PF11974 Bacterial alpha-2-macroglobulin MG3 domain IS_RS07095 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain IS_RS07095 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain IS_RS07095 PF07703 Alpha-2-macroglobulin bait region domain IS_RS07095 PF00207 Alpha-2-macroglobulin family IS_RS07095 PF01835 MG2 domain IS_RS07095 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain IS_RS07095 PF17962 Bacterial macroglobulin domain 6 IS_RS07110 PF06832 Penicillin-Binding Protein C-terminus Family IS_RS07110 PF00912 Transglycosylase IS_RS07110 PF00905 Penicillin binding protein transpeptidase domain IS_RS07130 PF01556 DnaJ C terminal domain IS_RS07130 PF00226 DnaJ domain IS_RS07135 PF00072 Response regulator receiver domain IS_RS07140 PF12221 Bacterial membrane protein N terminal IS_RS07140 PF01145 SPFH domain / Band 7 family IS_RS07145 PF01145 SPFH domain / Band 7 family IS_RS07155 PF00709 Adenylosuccinate synthetase IS_RS07160 PF11838 ERAP1-like C-terminal domain IS_RS07160 PF01433 Peptidase family M1 domain IS_RS07175 PF00440 Bacterial regulatory proteins, tetR family IS_RS07220 PF02384 N-6 DNA Methylase IS_RS07220 PF12161 HsdM N-terminal domain IS_RS07230 PF01420 Type I restriction modification DNA specificity domain IS_RS07235 PF12008 Type I restriction and modification enzyme - subunit R C terminal IS_RS07235 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IS_RS07235 PF18766 SWI2/SNF2 ATPase IS_RS07260 PF13456 Reverse transcriptase-like IS_RS07260 PF00300 Histidine phosphatase superfamily (branch 1) IS_RS07265 PF01256 Carbohydrate kinase IS_RS07275 PF00723 Glycosyl hydrolases family 15 IS_RS07285 PF07971 Glycosyl hydrolase family 92 IS_RS07285 PF17678 Glycosyl hydrolase family 92 N-terminal domain IS_RS07290 PF00106 short chain dehydrogenase IS_RS07305 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS07325 PF17755 UvrA DNA-binding domain IS_RS07330 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IS_RS07330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IS_RS07335 PF03450 CO dehydrogenase flavoprotein C-terminal domain IS_RS07335 PF00941 FAD binding domain in molybdopterin dehydrogenase IS_RS07340 PF01799 [2Fe-2S] binding domain IS_RS07340 PF00111 2Fe-2S iron-sulfur cluster binding domain IS_RS07375 PF01726 LexA DNA binding domain IS_RS07375 PF00717 Peptidase S24-like IS_RS07395 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IS_RS07395 PF14579 Helix-hairpin-helix motif IS_RS07395 PF02811 PHP domain IS_RS07395 PF07733 Bacterial DNA polymerase III alpha NTPase domain IS_RS07400 PF00326 Prolyl oligopeptidase family IS_RS07410 PF03169 OPT oligopeptide transporter protein IS_RS07425 PF07676 WD40-like Beta Propeller Repeat IS_RS07425 PF00326 Prolyl oligopeptidase family IS_RS07425 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region IS_RS07440 PF02311 AraC-like ligand binding domain IS_RS07440 PF12833 Helix-turn-helix domain IS_RS07460 PF18011 C-terminal domain found in long catalases IS_RS07460 PF06628 Catalase-related immune-responsive IS_RS07460 PF00199 Catalase IS_RS07465 PF00248 Aldo/keto reductase family IS_RS07470 PF00135 Carboxylesterase family IS_RS07475 PF02347 Glycine cleavage system P-protein IS_RS07495 PF00664 ABC transporter transmembrane region IS_RS07495 PF03412 Peptidase C39 family IS_RS07495 PF00005 ABC transporter IS_RS07500 PF07690 Major Facilitator Superfamily IS_RS07520 PF08019 Phosphoethanolamine transferase EptA/EptB IS_RS07520 PF00884 Sulfatase IS_RS07535 PF00072 Response regulator receiver domain IS_RS07535 PF00486 Transcriptional regulatory protein, C terminal IS_RS07540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS07540 PF08521 Two-component sensor kinase N-terminal IS_RS07540 PF00512 His Kinase A (phospho-acceptor) domain IS_RS07550 PF03776 Septum formation topological specificity factor MinE IS_RS07555 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IS_RS07560 PF03775 Septum formation inhibitor MinC, C-terminal domain IS_RS07560 PF05209 Septum formation inhibitor MinC, N-terminal domain IS_RS07570 PF07730 Histidine kinase IS_RS07575 PF00072 Response regulator receiver domain IS_RS07575 PF00196 Bacterial regulatory proteins, luxR family IS_RS07595 PF00730 HhH-GPD superfamily base excision DNA repair protein IS_RS07620 PF02222 ATP-grasp domain IS_RS07635 PF04377 Arginine-tRNA-protein transferase, C terminus IS_RS07635 PF04376 Arginine-tRNA-protein transferase, N terminus IS_RS07650 PF04542 Sigma-70 region 2 IS_RS07650 PF08281 Sigma-70, region 4 IS_RS07665 PF00378 Enoyl-CoA hydratase/isomerase IS_RS07680 PF00005 ABC transporter IS_RS07680 PF17755 UvrA DNA-binding domain IS_RS07680 PF17760 UvrA interaction domain IS_RS07685 PF00829 Ribosomal prokaryotic L21 protein IS_RS07690 PF01016 Ribosomal L27 protein IS_RS07695 PF01018 GTP1/OBG IS_RS07695 PF01926 50S ribosome-binding GTPase IS_RS07700 PF01649 Ribosomal protein S20 IS_RS07705 PF03023 Lipid II flippase MurJ IS_RS07710 PF06574 FAD synthetase IS_RS07710 PF01687 Riboflavin kinase IS_RS07715 PF06827 Zinc finger found in FPG and IleRS IS_RS07715 PF00133 tRNA synthetases class I (I, L, M and V) IS_RS07715 PF08264 Anticodon-binding domain of tRNA IS_RS07720 PF01252 Signal peptidase (SPase) II IS_RS07725 PF02401 LytB protein IS_RS07740 PF01609 Transposase DDE domain IS_RS07740 PF05598 Transposase domain (DUF772) IS_RS07760 PF01527 Transposase IS_RS07770 PF13276 HTH-like domain IS_RS07770 PF13683 Integrase core domain IS_RS07775 PF01527 Transposase IS_RS07805 PF00589 Phage integrase family IS_RS07810 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IS_RS07810 PF06481 COX Aromatic Rich Motif IS_RS07815 PF00115 Cytochrome C and Quinol oxidase polypeptide I IS_RS07820 PF00510 Cytochrome c oxidase subunit III IS_RS07825 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IS_RS07835 PF18073 Rubredoxin metal binding domain IS_RS07840 PF05656 Protein of unknown function (DUF805) IS_RS07850 PF12833 Helix-turn-helix domain IS_RS07855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS07855 PF00183 Hsp90 protein IS_RS07865 PF08678 Rsbr N terminal IS_RS07865 PF01740 STAS domain IS_RS07870 PF01740 STAS domain IS_RS07875 PF13581 Histidine kinase-like ATPase domain IS_RS07885 PF01627 Hpt domain IS_RS07885 PF00672 HAMP domain IS_RS07885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS07885 PF17149 Periplasmic sensor domain found in signal transduction proteins IS_RS07885 PF00512 His Kinase A (phospho-acceptor) domain IS_RS07885 PF00072 Response regulator receiver domain IS_RS07890 PF00512 His Kinase A (phospho-acceptor) domain IS_RS07890 PF13188 PAS domain IS_RS07890 PF08448 PAS fold IS_RS07890 PF00072 Response regulator receiver domain IS_RS07890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS07895 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain IS_RS07895 PF04616 Glycosyl hydrolases family 43 IS_RS07900 PF07715 TonB-dependent Receptor Plug Domain IS_RS07900 PF00593 TonB dependent receptor IS_RS07905 PF00085 Thioredoxin IS_RS07910 PF07237 Protein of unknown function (DUF1428) IS_RS07915 PF00512 His Kinase A (phospho-acceptor) domain IS_RS07915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS07915 PF13492 GAF domain IS_RS07915 PF13493 Domain of unknown function (DUF4118) IS_RS07915 PF02702 Osmosensitive K+ channel His kinase sensor domain IS_RS07920 PF01339 CheB methylesterase IS_RS07925 PF01739 CheR methyltransferase, SAM binding domain IS_RS07925 PF03705 CheR methyltransferase, all-alpha domain IS_RS07930 PF00672 HAMP domain IS_RS07930 PF00512 His Kinase A (phospho-acceptor) domain IS_RS07930 PF01627 Hpt domain IS_RS07930 PF00072 Response regulator receiver domain IS_RS07930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS07930 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IS_RS07935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS07935 PF13426 PAS domain IS_RS07935 PF00072 Response regulator receiver domain IS_RS07940 PF00072 Response regulator receiver domain IS_RS07945 PF06964 Alpha-L-arabinofuranosidase C-terminal domain IS_RS07955 PF01263 Aldose 1-epimerase IS_RS07960 PF01578 Cytochrome C assembly protein IS_RS07965 PF02978 Signal peptide binding domain IS_RS07965 PF00448 SRP54-type protein, GTPase domain IS_RS07965 PF02881 SRP54-type protein, helical bundle domain IS_RS07975 PF01063 Amino-transferase class IV IS_RS07980 PF00886 Ribosomal protein S16 IS_RS07985 PF05239 PRC-barrel domain IS_RS07985 PF01782 RimM N-terminal domain IS_RS07990 PF01746 tRNA (Guanine-1)-methyltransferase IS_RS07995 PF01245 Ribosomal protein L19 IS_RS08000 PF01554 MatE IS_RS08020 PF01479 S4 domain IS_RS08025 PF00141 Peroxidase IS_RS08035 PF01624 MutS domain I IS_RS08035 PF05190 MutS family domain IV IS_RS08035 PF05192 MutS domain III IS_RS08035 PF05188 MutS domain II IS_RS08035 PF00488 MutS domain V IS_RS08050 PF13276 HTH-like domain IS_RS08050 PF13683 Integrase core domain IS_RS08055 PF01527 Transposase IS_RS08070 PF02837 Glycosyl hydrolases family 2, sugar binding domain IS_RS08070 PF02836 Glycosyl hydrolases family 2, TIM barrel domain IS_RS08070 PF00703 Glycosyl hydrolases family 2 IS_RS08070 PF16355 Domain of unknown function (DUF4982) IS_RS08070 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 IS_RS08075 PF07745 Glycosyl hydrolase family 53 IS_RS08085 PF09856 Predicted transcriptional regulator (DUF2083) IS_RS08085 PF06114 IrrE N-terminal-like domain IS_RS08085 PF01381 Helix-turn-helix IS_RS08090 PF00171 Aldehyde dehydrogenase family IS_RS08095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IS_RS08095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IS_RS08095 PF02770 Acyl-CoA dehydrogenase, middle domain IS_RS08100 PF00378 Enoyl-CoA hydratase/isomerase IS_RS08105 PF00378 Enoyl-CoA hydratase/isomerase IS_RS08105 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IS_RS08105 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IS_RS08110 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IS_RS08110 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IS_RS08115 PF01545 Cation efflux family IS_RS08120 PF00378 Enoyl-CoA hydratase/isomerase IS_RS08120 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IS_RS08120 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IS_RS08125 PF04542 Sigma-70 region 2 IS_RS08125 PF08281 Sigma-70, region 4 IS_RS08135 PF13180 PDZ domain IS_RS08140 PF06421 GTP-binding protein LepA C-terminus IS_RS08140 PF03144 Elongation factor Tu domain 2 IS_RS08140 PF00679 Elongation factor G C-terminus IS_RS08140 PF00009 Elongation factor Tu GTP binding domain IS_RS08145 PF10502 Signal peptidase, peptidase S26 IS_RS08155 PF14622 Ribonuclease-III-like IS_RS08155 PF00035 Double-stranded RNA binding motif IS_RS08160 PF01926 50S ribosome-binding GTPase IS_RS08160 PF07650 KH domain IS_RS08170 PF11967 Recombination protein O N terminal IS_RS08170 PF02565 Recombination protein O C terminal IS_RS08185 PF05958 tRNA (Uracil-5-)-methyltransferase IS_RS08190 PF01928 CYTH domain IS_RS08195 PF01323 DSBA-like thioredoxin domain IS_RS08200 PF01593 Flavin containing amine oxidoreductase IS_RS08205 PF04244 Deoxyribodipyrimidine photo-lyase-related protein IS_RS08210 PF00933 Glycosyl hydrolase family 3 N terminal domain IS_RS08215 PF00156 Phosphoribosyl transferase domain IS_RS08220 PF01048 Phosphorylase superfamily IS_RS08225 PF00313 'Cold-shock' DNA-binding domain IS_RS08240 PF00270 DEAD/DEAH box helicase IS_RS08240 PF08494 DEAD/H associated IS_RS08240 PF00271 Helicase conserved C-terminal domain IS_RS08245 PF04675 DNA ligase N terminus IS_RS08245 PF01068 ATP dependent DNA ligase domain IS_RS08245 PF04679 ATP dependent DNA ligase C terminal region IS_RS08255 PF01068 ATP dependent DNA ligase domain IS_RS08255 PF04675 DNA ligase N terminus IS_RS08255 PF04679 ATP dependent DNA ligase C terminal region IS_RS08270 PF00072 Response regulator receiver domain IS_RS08270 PF00990 Diguanylate cyclase, GGDEF domain IS_RS08285 PF02803 Thiolase, C-terminal domain IS_RS08285 PF00108 Thiolase, N-terminal domain IS_RS08290 PF00082 Subtilase family IS_RS08290 PF12951 Passenger-associated-transport-repeat IS_RS08290 PF03797 Autotransporter beta-domain IS_RS08295 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IS_RS08295 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IS_RS08305 PF01863 Protein of unknown function DUF45 IS_RS08310 PF07043 Protein of unknown function (DUF1328) IS_RS08320 PF01258 Prokaryotic dksA/traR C4-type zinc finger IS_RS08355 PF03831 PhnA domain IS_RS08355 PF08274 PhnA Zinc-Ribbon IS_RS08360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IS_RS08365 PF07690 Major Facilitator Superfamily IS_RS08400 PF09924 Uncharacterised conserved protein (DUF2156) IS_RS08400 PF03706 Lysylphosphatidylglycerol synthase TM region IS_RS08410 PF01042 Endoribonuclease L-PSP IS_RS08455 PF04545 Sigma-70, region 4 IS_RS08455 PF04542 Sigma-70 region 2 IS_RS08475 PF04060 Putative Fe-S cluster IS_RS08485 PF09334 tRNA synthetases class I (M) IS_RS08485 PF01588 Putative tRNA binding domain IS_RS08505 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IS_RS08520 PF00324 Amino acid permease IS_RS08525 PF02574 Homocysteine S-methyltransferase IS_RS08535 PF02592 Putative vitamin uptake transporter IS_RS08555 PF03551 Transcriptional regulator PadR-like family IS_RS08575 PF03653 Uncharacterised protein family (UPF0093) IS_RS08590 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IS_RS08595 PF01336 OB-fold nucleic acid binding domain IS_RS08595 PF14579 Helix-hairpin-helix motif IS_RS08595 PF07733 Bacterial DNA polymerase III alpha NTPase domain IS_RS08595 PF02811 PHP domain IS_RS08595 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IS_RS08600 PF01351 Ribonuclease HII IS_RS08605 PF02684 Lipid-A-disaccharide synthetase IS_RS08610 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IS_RS08610 PF00132 Bacterial transferase hexapeptide (six repeats) IS_RS08615 PF07977 FabA-like domain IS_RS08620 PF00132 Bacterial transferase hexapeptide (six repeats) IS_RS08620 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IS_RS08630 PF07244 Surface antigen variable number repeat IS_RS08630 PF01103 Surface antigen IS_RS08635 PF17820 PDZ domain IS_RS08635 PF02163 Peptidase family M50 IS_RS08640 PF13288 DXP reductoisomerase C-terminal domain IS_RS08640 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IS_RS08640 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IS_RS08650 PF01255 Putative undecaprenyl diphosphate synthase IS_RS08655 PF01765 Ribosome recycling factor IS_RS08660 PF00696 Amino acid kinase family IS_RS08665 PF00990 Diguanylate cyclase, GGDEF domain IS_RS08670 PF00889 Elongation factor TS IS_RS08675 PF00318 Ribosomal protein S2 IS_RS08710 PF00557 Metallopeptidase family M24 IS_RS08715 PF08335 GlnD PII-uridylyltransferase IS_RS08715 PF01966 HD domain IS_RS08715 PF01909 Nucleotidyltransferase domain IS_RS08720 PF14602 Hexapeptide repeat of succinyl-transferase IS_RS08720 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IS_RS08720 PF00132 Bacterial transferase hexapeptide (six repeats) IS_RS08725 PF03960 ArsC family IS_RS08730 PF01546 Peptidase family M20/M25/M40 IS_RS08730 PF07687 Peptidase dimerisation domain IS_RS08735 PF13537 Glutamine amidotransferase domain IS_RS08735 PF00733 Asparagine synthase IS_RS08750 PF01804 Penicillin amidase IS_RS08755 PF00210 Ferritin-like domain IS_RS08760 PF05724 Thiopurine S-methyltransferase (TPMT) IS_RS08765 PF03989 DNA gyrase C-terminal domain, beta-propeller IS_RS08765 PF00521 DNA gyrase/topoisomerase IV, subunit A IS_RS08785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IS_RS08785 PF00529 HlyD membrane-fusion protein of T1SS IS_RS08790 PF07690 Major Facilitator Superfamily IS_RS08810 PF07691 PA14 domain IS_RS08810 PF01915 Glycosyl hydrolase family 3 C-terminal domain IS_RS08810 PF14310 Fibronectin type III-like domain IS_RS08810 PF00933 Glycosyl hydrolase family 3 N terminal domain IS_RS08820 PF00854 POT family IS_RS08845 PF12802 MarR family IS_RS08850 PF01432 Peptidase family M3 IS_RS08855 PF00255 Glutathione peroxidase IS_RS08860 PF00970 Oxidoreductase FAD-binding domain IS_RS08860 PF00175 Oxidoreductase NAD-binding domain IS_RS08865 PF00005 ABC transporter IS_RS08870 PF05681 Fumarate hydratase (Fumerase) IS_RS08870 PF05683 Fumarase C-terminus IS_RS08885 PF00484 Carbonic anhydrase IS_RS08890 PF02253 Phospholipase A1 IS_RS08900 PF00313 'Cold-shock' DNA-binding domain IS_RS08915 PF00899 ThiF family IS_RS08920 PF01026 TatD related DNase IS_RS08935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IS_RS08935 PF02770 Acyl-CoA dehydrogenase, middle domain IS_RS08935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IS_RS08945 PF02798 Glutathione S-transferase, N-terminal domain IS_RS08945 PF00043 Glutathione S-transferase, C-terminal domain IS_RS08950 PF13537 Glutamine amidotransferase domain IS_RS08950 PF00733 Asparagine synthase IS_RS08955 PF03358 NADPH-dependent FMN reductase IS_RS08960 PF03796 DnaB-like helicase C terminal domain IS_RS08960 PF00772 DnaB-like helicase N terminal domain IS_RS08965 PF03441 FAD binding domain of DNA photolyase IS_RS08965 PF00875 DNA photolyase IS_RS08970 PF00691 OmpA family IS_RS08970 PF05736 OprF membrane domain IS_RS08975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS08975 PF03466 LysR substrate binding domain IS_RS08990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IS_RS08990 PF00529 HlyD membrane-fusion protein of T1SS IS_RS08995 PF00873 AcrB/AcrD/AcrF family IS_RS09000 PF00106 short chain dehydrogenase IS_RS09005 PF02321 Outer membrane efflux protein IS_RS09010 PF00990 Diguanylate cyclase, GGDEF domain IS_RS09020 PF00990 Diguanylate cyclase, GGDEF domain IS_RS09035 PF01527 Transposase IS_RS09040 PF13683 Integrase core domain IS_RS09040 PF13276 HTH-like domain IS_RS09055 PF01668 SmpB protein IS_RS09060 PF03364 Polyketide cyclase / dehydrase and lipid transport IS_RS09065 PF03658 RnfH family Ubiquitin IS_RS09070 PF04355 SmpA / OmlA family IS_RS09075 PF01475 Ferric uptake regulator family IS_RS09080 PF02463 RecF/RecN/SMC N terminal domain IS_RS09085 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding IS_RS09085 PF01628 HrcA protein C terminal domain IS_RS09090 PF01025 GrpE IS_RS09095 PF00012 Hsp70 protein IS_RS09100 PF00226 DnaJ domain IS_RS09100 PF01556 DnaJ C terminal domain IS_RS09100 PF00684 DnaJ central domain IS_RS09105 PF08543 Phosphomethylpyrimidine kinase IS_RS09130 PF00005 ABC transporter IS_RS09130 PF03412 Peptidase C39 family IS_RS09130 PF00664 ABC transporter transmembrane region IS_RS09135 PF03466 LysR substrate binding domain IS_RS09135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS09140 PF00664 ABC transporter transmembrane region IS_RS09140 PF00005 ABC transporter IS_RS09145 PF01205 Uncharacterized protein family UPF0029 IS_RS09150 PF03641 Possible lysine decarboxylase IS_RS09155 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS09155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IS_RS09160 PF02817 e3 binding domain IS_RS09160 PF00364 Biotin-requiring enzyme IS_RS09160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IS_RS09165 PF16870 2-oxoglutarate dehydrogenase C-terminal IS_RS09165 PF02779 Transketolase, pyrimidine binding domain IS_RS09165 PF00676 Dehydrogenase E1 component IS_RS09165 PF16078 2-oxoglutarate dehydrogenase N-terminus IS_RS09175 PF08007 Cupin superfamily protein IS_RS09185 PF00206 Lyase IS_RS09185 PF08328 Adenylosuccinate lyase C-terminal IS_RS09195 PF00571 CBS domain IS_RS09195 PF03471 Transporter associated domain IS_RS09195 PF01595 Cyclin M transmembrane N-terminal domain IS_RS09200 PF00206 Lyase IS_RS09200 PF10415 Fumarase C C-terminus IS_RS09225 PF00005 ABC transporter IS_RS09230 PF00392 Bacterial regulatory proteins, gntR family IS_RS09235 PF00255 Glutathione peroxidase IS_RS09240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IS_RS09240 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IS_RS09245 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IS_RS09245 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IS_RS09245 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IS_RS09250 PF04102 SlyX IS_RS09265 PF00356 Bacterial regulatory proteins, lacI family IS_RS09270 PF07690 Major Facilitator Superfamily IS_RS09275 PF00294 pfkB family carbohydrate kinase IS_RS09285 PF02607 B12 binding domain IS_RS09285 PF02965 Vitamin B12 dependent methionine synthase, activation domain IS_RS09285 PF00809 Pterin binding enzyme IS_RS09285 PF02310 B12 binding domain IS_RS09285 PF02574 Homocysteine S-methyltransferase IS_RS09290 PF00809 Pterin binding enzyme IS_RS09290 PF02574 Homocysteine S-methyltransferase IS_RS09295 PF01209 ubiE/COQ5 methyltransferase family IS_RS09300 PF02770 Acyl-CoA dehydrogenase, middle domain IS_RS09300 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IS_RS09300 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IS_RS09320 PF00773 RNB domain IS_RS09320 PF08461 Ribonuclease R winged-helix domain IS_RS09320 PF17876 Cold shock domain IS_RS09320 PF00575 S1 RNA binding domain IS_RS09320 PF08206 Ribonuclease B OB domain IS_RS09335 PF00588 SpoU rRNA Methylase family IS_RS09335 PF08032 RNA 2'-O ribose methyltransferase substrate binding IS_RS09345 PF00990 Diguanylate cyclase, GGDEF domain IS_RS09350 PF00929 Exonuclease IS_RS09360 PF01895 PhoU domain IS_RS09365 PF00005 ABC transporter IS_RS09370 PF00528 Binding-protein-dependent transport system inner membrane component IS_RS09375 PF00528 Binding-protein-dependent transport system inner membrane component IS_RS09380 PF12849 PBP superfamily domain IS_RS09385 PF12849 PBP superfamily domain IS_RS09400 PF00484 Carbonic anhydrase IS_RS09405 PF00916 Sulfate permease family IS_RS09405 PF01740 STAS domain IS_RS09410 PF00730 HhH-GPD superfamily base excision DNA repair protein IS_RS09410 PF10576 Iron-sulfur binding domain of endonuclease III IS_RS09410 PF00633 Helix-hairpin-helix motif IS_RS09420 PF00378 Enoyl-CoA hydratase/isomerase IS_RS09425 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IS_RS09425 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IS_RS09430 PF00293 NUDIX domain IS_RS09435 PF00581 Rhodanese-like domain IS_RS09465 PF00005 ABC transporter IS_RS09475 PF02926 THUMP domain IS_RS09475 PF10672 S-adenosylmethionine-dependent methyltransferase IS_RS09475 PF01170 Putative RNA methylase family UPF0020 IS_RS09480 PF01513 ATP-NAD kinase IS_RS09500 PF00929 Exonuclease IS_RS09500 PF08411 Exonuclease C-terminal IS_RS09505 PF01494 FAD binding domain IS_RS09510 PF00266 Aminotransferase class-V IS_RS09520 PF06052 3-hydroxyanthranilic acid dioxygenase IS_RS09525 PF00484 Carbonic anhydrase IS_RS09570 PF00196 Bacterial regulatory proteins, luxR family IS_RS09570 PF00072 Response regulator receiver domain IS_RS09580 PF04299 Putative FMN-binding domain IS_RS09600 PF00152 tRNA synthetases class II (D, K and N) IS_RS09600 PF01336 OB-fold nucleic acid binding domain IS_RS09605 PF01521 Iron-sulphur cluster biosynthesis IS_RS09610 PF01250 Ribosomal protein S6 IS_RS09615 PF01084 Ribosomal protein S18 IS_RS09620 PF01281 Ribosomal protein L9, N-terminal domain IS_RS09620 PF03948 Ribosomal protein L9, C-terminal domain IS_RS09625 PF02463 RecF/RecN/SMC N terminal domain IS_RS09630 PF04354 ZipA, C-terminal FtsZ-binding domain IS_RS09640 PF00155 Aminotransferase class I and II IS_RS09645 PF03120 NAD-dependent DNA ligase OB-fold domain IS_RS09645 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IS_RS09645 PF01653 NAD-dependent DNA ligase adenylation domain IS_RS09645 PF12826 Helix-hairpin-helix motif IS_RS09645 PF00533 BRCA1 C Terminus (BRCT) domain IS_RS09650 PF00152 tRNA synthetases class II (D, K and N) IS_RS09660 PF01008 Initiation factor 2 subunit family IS_RS09665 PF03989 DNA gyrase C-terminal domain, beta-propeller IS_RS09665 PF00521 DNA gyrase/topoisomerase IV, subunit A IS_RS09670 PF13360 PQQ-like domain IS_RS09680 PF01175 Urocanase Rossmann-like domain IS_RS09680 PF17391 Urocanase N-terminal domain IS_RS09680 PF17392 Urocanase C-terminal domain IS_RS09690 PF00221 Aromatic amino acid lyase IS_RS09695 PF07969 Amidohydrolase family IS_RS09710 PF00392 Bacterial regulatory proteins, gntR family IS_RS09710 PF07702 UTRA domain IS_RS09735 PF01794 Ferric reductase like transmembrane component IS_RS09740 PF00174 Oxidoreductase molybdopterin binding domain IS_RS09745 PF00266 Aminotransferase class-V IS_RS09750 PF00800 Prephenate dehydratase IS_RS09750 PF01817 Chorismate mutase type II IS_RS09750 PF01842 ACT domain IS_RS09755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IS_RS09765 PF03544 Gram-negative bacterial TonB protein C-terminal IS_RS09770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IS_RS09770 PF02403 Seryl-tRNA synthetase N-terminal domain IS_RS09775 PF02525 Flavodoxin-like fold IS_RS09780 PF03466 LysR substrate binding domain IS_RS09780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS09800 PF13276 HTH-like domain IS_RS09800 PF13333 Integrase core domain IS_RS09800 PF00665 Integrase core domain IS_RS09815 PF00672 HAMP domain IS_RS09815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS09815 PF02203 Tar ligand binding domain homologue IS_RS09820 PF01494 FAD binding domain IS_RS09840 PF00072 Response regulator receiver domain IS_RS09840 PF08448 PAS fold IS_RS09840 PF13188 PAS domain IS_RS09840 PF00512 His Kinase A (phospho-acceptor) domain IS_RS09840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS09845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS09845 PF00072 Response regulator receiver domain IS_RS09845 PF01627 Hpt domain IS_RS09845 PF00672 HAMP domain IS_RS09845 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IS_RS09845 PF00512 His Kinase A (phospho-acceptor) domain IS_RS09850 PF06745 KaiC IS_RS09855 PF00072 Response regulator receiver domain IS_RS09855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS09855 PF13426 PAS domain IS_RS09865 PF03918 Cytochrome C biogenesis protein IS_RS09870 PF08534 Redoxin IS_RS09875 PF01578 Cytochrome C assembly protein IS_RS09875 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IS_RS09880 PF03100 CcmE IS_RS09885 PF04995 Heme exporter protein D (CcmD) IS_RS09890 PF01578 Cytochrome C assembly protein IS_RS09895 PF00082 Subtilase family IS_RS09905 PF08281 Sigma-70, region 4 IS_RS09905 PF04542 Sigma-70 region 2 IS_RS09920 PF00034 Cytochrome c IS_RS09935 PF05523 WxcM-like, C-terminal IS_RS09940 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IS_RS09945 PF01943 Polysaccharide biosynthesis protein IS_RS09950 PF00535 Glycosyl transferase family 2 IS_RS09965 PF08241 Methyltransferase domain IS_RS09985 PF13579 Glycosyl transferase 4-like domain IS_RS09985 PF00534 Glycosyl transferases group 1 IS_RS10000 PF00005 ABC transporter IS_RS10005 PF00664 ABC transporter transmembrane region IS_RS10005 PF00005 ABC transporter IS_RS10015 PF00296 Luciferase-like monooxygenase IS_RS10030 PF03471 Transporter associated domain IS_RS10030 PF00571 CBS domain IS_RS10030 PF01595 Cyclin M transmembrane N-terminal domain IS_RS10040 PF01384 Phosphate transporter family IS_RS10055 PF01751 Toprim domain IS_RS10055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS10055 PF00986 DNA gyrase B subunit, carboxyl terminus IS_RS10055 PF00204 DNA gyrase B IS_RS10065 PF00117 Glutamine amidotransferase class-I IS_RS10065 PF06418 CTP synthase N-terminus IS_RS10070 PF00793 DAHP synthetase I family IS_RS10080 PF03952 Enolase, N-terminal domain IS_RS10080 PF00113 Enolase, C-terminal TIM barrel domain IS_RS10085 PF04977 Septum formation initiator IS_RS10090 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IS_RS10095 PF02542 YgbB family IS_RS10100 PF01142 tRNA pseudouridine synthase D (TruD) IS_RS10105 PF01713 Smr domain IS_RS10110 PF01975 Survival protein SurE IS_RS10120 PF09335 SNARE associated Golgi protein IS_RS10125 PF01476 LysM domain IS_RS10125 PF01551 Peptidase family M23 IS_RS10130 PF04430 Protein of unknown function (DUF498/DUF598) IS_RS10135 PF01985 CRS1 / YhbY (CRM) domain IS_RS10140 PF01728 FtsJ-like methyltransferase IS_RS10145 PF01434 Peptidase family M41 IS_RS10145 PF00004 ATPase family associated with various cellular activities (AAA) IS_RS10145 PF17862 AAA+ lid domain IS_RS10145 PF06480 FtsH Extracellular IS_RS10150 PF00809 Pterin binding enzyme IS_RS10160 PF17209 Hfq protein IS_RS10165 PF01926 50S ribosome-binding GTPase IS_RS10165 PF13167 GTP-binding GTPase N-terminal IS_RS10165 PF16360 GTP-binding GTPase Middle Region IS_RS10170 PF02464 Competence-damaged protein IS_RS10175 PF03109 ABC1 family IS_RS10180 PF00717 Peptidase S24-like IS_RS10180 PF01726 LexA DNA binding domain IS_RS10185 PF00154 recA bacterial DNA recombination protein IS_RS10190 PF02631 RecX family IS_RS10195 PF02272 DHHA1 domain IS_RS10195 PF01411 tRNA synthetases class II (A) IS_RS10195 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IS_RS10200 PF02599 Global regulator protein family IS_RS10210 PF13426 PAS domain IS_RS10210 PF08447 PAS fold IS_RS10210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS10215 PF02678 Pirin IS_RS10215 PF17954 Quercetinase C-terminal cupin domain IS_RS10225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS10225 PF03466 LysR substrate binding domain IS_RS10250 PF08543 Phosphomethylpyrimidine kinase IS_RS10265 PF13638 PIN domain IS_RS10265 PF02562 PhoH-like protein IS_RS10270 PF00578 AhpC/TSA family IS_RS10285 PF00701 Dihydrodipicolinate synthetase family IS_RS10295 PF11953 Domain of unknown function (DUF3470) IS_RS10295 PF00037 4Fe-4S binding domain IS_RS10300 PF05035 2-keto-3-deoxy-galactonokinase IS_RS10305 PF08450 SMP-30/Gluconolactonase/LRE-like region IS_RS10310 PF13378 Enolase C-terminal domain-like IS_RS10310 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IS_RS10315 PF01081 KDPG and KHG aldolase IS_RS10325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS10325 PF03466 LysR substrate binding domain IS_RS10340 PF03442 Carbohydrate binding domain X2 IS_RS10340 PF00942 Cellulose binding domain IS_RS10355 PF01055 Glycosyl hydrolases family 31 IS_RS10355 PF17137 Domain of unknown function (DUF5110) IS_RS10355 PF16338 Domain of unknown function (DUF4968) IS_RS10365 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IS_RS10365 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IS_RS10375 PF00083 Sugar (and other) transporter IS_RS10390 PF01520 N-acetylmuramoyl-L-alanine amidase IS_RS10395 PF02649 Type I GTP cyclohydrolase folE2 IS_RS10405 PF01743 Poly A polymerase head domain IS_RS10405 PF12627 Probable RNA and SrmB- binding site of polymerase A IS_RS10405 PF12626 Polymerase A arginine-rich C-terminus IS_RS10410 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IS_RS10415 PF02548 Ketopantoate hydroxymethyltransferase IS_RS10420 PF02569 Pantoate-beta-alanine ligase IS_RS10425 PF02261 Aspartate decarboxylase IS_RS10430 PF00342 Phosphoglucose isomerase IS_RS10450 PF14310 Fibronectin type III-like domain IS_RS10450 PF00933 Glycosyl hydrolase family 3 N terminal domain IS_RS10450 PF01915 Glycosyl hydrolase family 3 C-terminal domain IS_RS10455 PF00474 Sodium:solute symporter family IS_RS10460 PF00360 Phytochrome region IS_RS10460 PF01590 GAF domain IS_RS10460 PF00990 Diguanylate cyclase, GGDEF domain IS_RS10460 PF00563 EAL domain IS_RS10465 PF02013 Cellulose or protein binding domain IS_RS10465 PF00150 Cellulase (glycosyl hydrolase family 5) IS_RS10470 PF00072 Response regulator receiver domain IS_RS10480 PF04551 GcpE protein IS_RS10485 PF01569 PAP2 superfamily IS_RS10490 PF07690 Major Facilitator Superfamily IS_RS10495 PF01177 Asp/Glu/Hydantoin racemase IS_RS10500 PF00892 EamA-like transporter family IS_RS10505 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IS_RS10505 PF01565 FAD binding domain IS_RS10510 PF01180 Dihydroorotate dehydrogenase IS_RS10525 PF00171 Aldehyde dehydrogenase family IS_RS10535 PF13683 Integrase core domain IS_RS10535 PF13276 HTH-like domain IS_RS10540 PF01527 Transposase IS_RS10555 PF13333 Integrase core domain IS_RS10555 PF13276 HTH-like domain IS_RS10555 PF00665 Integrase core domain IS_RS10565 PF13276 HTH-like domain IS_RS10565 PF13683 Integrase core domain IS_RS10570 PF01527 Transposase IS_RS10585 PF13683 Integrase core domain IS_RS10585 PF13276 HTH-like domain IS_RS10590 PF13683 Integrase core domain IS_RS10590 PF13276 HTH-like domain IS_RS10595 PF01527 Transposase IS_RS10630 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IS_RS10630 PF17287 POTRA domain IS_RS10630 PF08479 POTRA domain, ShlB-type IS_RS10635 PF05594 Haemagluttinin repeat IS_RS10635 PF13332 Hemagglutinin repeat IS_RS10635 PF04829 Pre-toxin domain with VENN motif IS_RS10635 PF05860 haemagglutination activity domain IS_RS10635 PF15526 Novel toxin 21 IS_RS10640 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain IS_RS10640 PF05860 haemagglutination activity domain IS_RS10640 PF13018 Extended Signal Peptide of Type V secretion system IS_RS10640 PF05594 Haemagluttinin repeat IS_RS10640 PF13332 Hemagglutinin repeat IS_RS10645 PF01527 Transposase IS_RS10650 PF13683 Integrase core domain IS_RS10650 PF13276 HTH-like domain IS_RS10655 PF03073 TspO/MBR family IS_RS10660 PF01842 ACT domain IS_RS10660 PF13840 ACT domain IS_RS10660 PF00742 Homoserine dehydrogenase IS_RS10660 PF03447 Homoserine dehydrogenase, NAD binding domain IS_RS10660 PF00696 Amino acid kinase family IS_RS10665 PF00288 GHMP kinases N terminal domain IS_RS10665 PF08544 GHMP kinases C terminal IS_RS10675 PF14821 Threonine synthase N terminus IS_RS10675 PF00291 Pyridoxal-phosphate dependent enzyme IS_RS10685 PF13545 Crp-like helix-turn-helix domain IS_RS10685 PF00027 Cyclic nucleotide-binding domain IS_RS10690 PF13393 Histidyl-tRNA synthetase IS_RS10690 PF03129 Anticodon binding domain IS_RS10700 PF08029 HisG, C-terminal domain IS_RS10700 PF01634 ATP phosphoribosyltransferase IS_RS10705 PF00815 Histidinol dehydrogenase IS_RS10710 PF00155 Aminotransferase class I and II IS_RS10715 PF00475 Imidazoleglycerol-phosphate dehydratase IS_RS10720 PF00117 Glutamine amidotransferase class-I IS_RS10725 PF00977 Histidine biosynthesis protein IS_RS10730 PF00977 Histidine biosynthesis protein IS_RS10735 PF01502 Phosphoribosyl-AMP cyclohydrolase IS_RS10735 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase IS_RS10755 PF03079 ARD/ARD' family IS_RS10760 PF00596 Class II Aldolase and Adducin N-terminal domain IS_RS10765 PF13520 Amino acid permease IS_RS10770 PF13520 Amino acid permease IS_RS10780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IS_RS10780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IS_RS10785 PF02913 FAD linked oxidases, C-terminal domain IS_RS10785 PF01565 FAD binding domain IS_RS10805 PF01132 Elongation factor P (EF-P) OB domain IS_RS10805 PF08207 Elongation factor P (EF-P) KOW-like domain IS_RS10805 PF09285 Elongation factor P, C-terminal IS_RS10810 PF00106 short chain dehydrogenase IS_RS10815 PF00682 HMGL-like IS_RS10825 PF00378 Enoyl-CoA hydratase/isomerase IS_RS10835 PF07664 Ferrous iron transport protein B C terminus IS_RS10835 PF07670 Nucleoside recognition IS_RS10835 PF02421 Ferrous iron transport protein B IS_RS10850 PF00155 Aminotransferase class I and II IS_RS10855 PF03473 MOSC domain IS_RS10855 PF03475 3-alpha domain IS_RS10860 PF05173 Dihydrodipicolinate reductase, C-terminus IS_RS10860 PF01113 Dihydrodipicolinate reductase, N-terminus IS_RS10865 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IS_RS10865 PF00117 Glutamine amidotransferase class-I IS_RS10875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IS_RS10875 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IS_RS10875 PF02142 MGS-like domain IS_RS10880 PF01272 Transcription elongation factor, GreA/GreB, C-term IS_RS10880 PF03449 Transcription elongation factor, N-terminal IS_RS10890 PF17768 RecJ OB domain IS_RS10890 PF01368 DHH family IS_RS10890 PF02272 DHHA1 domain IS_RS10900 PF04397 LytTr DNA-binding domain IS_RS10900 PF00072 Response regulator receiver domain IS_RS10905 PF03462 PCRF domain IS_RS10905 PF00472 RF-1 domain IS_RS10910 PF00152 tRNA synthetases class II (D, K and N) IS_RS10910 PF01336 OB-fold nucleic acid binding domain IS_RS10915 PF00072 Response regulator receiver domain IS_RS10920 PF00512 His Kinase A (phospho-acceptor) domain IS_RS10920 PF01627 Hpt domain IS_RS10920 PF00072 Response regulator receiver domain IS_RS10920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS10925 PF00072 Response regulator receiver domain IS_RS10925 PF01627 Hpt domain IS_RS10925 PF00512 His Kinase A (phospho-acceptor) domain IS_RS10925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS10930 PF00378 Enoyl-CoA hydratase/isomerase IS_RS10935 PF00501 AMP-binding enzyme IS_RS10935 PF13193 AMP-binding enzyme C-terminal domain IS_RS10950 PF00330 Aconitase family (aconitate hydratase) IS_RS10950 PF00694 Aconitase C-terminal domain IS_RS10965 PF11791 Aconitate B N-terminal domain IS_RS10965 PF00330 Aconitase family (aconitate hydratase) IS_RS10965 PF06434 Aconitate hydratase 2 N-terminus IS_RS10970 PF00561 alpha/beta hydrolase fold IS_RS10975 PF00563 EAL domain IS_RS10975 PF00990 Diguanylate cyclase, GGDEF domain IS_RS10975 PF03707 Bacterial signalling protein N terminal repeat IS_RS10980 PF00072 Response regulator receiver domain IS_RS10980 PF01339 CheB methylesterase IS_RS10985 PF03975 CheD chemotactic sensory transduction IS_RS10990 PF03705 CheR methyltransferase, all-alpha domain IS_RS10990 PF01739 CheR methyltransferase, SAM binding domain IS_RS10995 PF00672 HAMP domain IS_RS10995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS10995 PF02203 Tar ligand binding domain homologue IS_RS11005 PF01584 CheW-like domain IS_RS11010 PF07238 PilZ domain IS_RS11010 PF07317 Flagellar regulator YcgR IS_RS11015 PF00672 HAMP domain IS_RS11015 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11015 PF02203 Tar ligand binding domain homologue IS_RS11020 PF00672 HAMP domain IS_RS11020 PF02203 Tar ligand binding domain homologue IS_RS11020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11025 PF00672 HAMP domain IS_RS11025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11025 PF02203 Tar ligand binding domain homologue IS_RS11030 PF02203 Tar ligand binding domain homologue IS_RS11030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11030 PF00672 HAMP domain IS_RS11035 PF00672 HAMP domain IS_RS11035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11035 PF02203 Tar ligand binding domain homologue IS_RS11045 PF02203 Tar ligand binding domain homologue IS_RS11045 PF00672 HAMP domain IS_RS11045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11050 PF00672 HAMP domain IS_RS11050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11050 PF02203 Tar ligand binding domain homologue IS_RS11055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11055 PF00672 HAMP domain IS_RS11070 PF00672 HAMP domain IS_RS11070 PF02203 Tar ligand binding domain homologue IS_RS11070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11075 PF08269 Cache domain IS_RS11075 PF08269 Cache domain IS_RS11075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11085 PF00672 HAMP domain IS_RS11085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11085 PF02203 Tar ligand binding domain homologue IS_RS11090 PF00672 HAMP domain IS_RS11090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11090 PF02203 Tar ligand binding domain homologue IS_RS11095 PF01584 CheW-like domain IS_RS11095 PF01627 Hpt domain IS_RS11095 PF02895 Signal transducing histidine kinase, homodimeric domain IS_RS11095 PF09078 CheY binding IS_RS11095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS11100 PF00072 Response regulator receiver domain IS_RS11110 PF01584 CheW-like domain IS_RS11115 PF13614 AAA domain IS_RS11120 PF00691 OmpA family IS_RS11120 PF13677 Membrane MotB of proton-channel complex MotA/MotB IS_RS11125 PF01618 MotA/TolQ/ExbB proton channel family IS_RS11155 PF01527 Transposase IS_RS11160 PF13683 Integrase core domain IS_RS11160 PF13276 HTH-like domain IS_RS11185 PF01627 Hpt domain IS_RS11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS11185 PF02895 Signal transducing histidine kinase, homodimeric domain IS_RS11185 PF01584 CheW-like domain IS_RS11185 PF00072 Response regulator receiver domain IS_RS11190 PF04344 Chemotaxis phosphatase, CheZ IS_RS11195 PF00072 Response regulator receiver domain IS_RS11200 PF04542 Sigma-70 region 2 IS_RS11200 PF04545 Sigma-70, region 4 IS_RS11200 PF04539 Sigma-70 region 3 IS_RS11205 PF10609 NUBPL iron-transfer P-loop NTPase IS_RS11210 PF00448 SRP54-type protein, GTPase domain IS_RS11215 PF00771 FHIPEP family IS_RS11220 PF01312 FlhB HrpN YscU SpaS Family IS_RS11225 PF00990 Diguanylate cyclase, GGDEF domain IS_RS11225 PF03707 Bacterial signalling protein N terminal repeat IS_RS11225 PF00563 EAL domain IS_RS11230 PF00990 Diguanylate cyclase, GGDEF domain IS_RS11235 PF00990 Diguanylate cyclase, GGDEF domain IS_RS11240 PF01311 Bacterial export proteins, family 1 IS_RS11245 PF01313 Bacterial export proteins, family 3 IS_RS11250 PF00813 FliP family IS_RS11255 PF04347 Flagellar biosynthesis protein, FliO IS_RS11260 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IS_RS11265 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IS_RS11265 PF02154 Flagellar motor switch protein FliM IS_RS11285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IS_RS11285 PF18269 T3SS EscN ATPase C-terminal domain IS_RS11295 PF01706 FliG C-terminal domain IS_RS11295 PF14841 FliG middle domain IS_RS11295 PF14842 FliG N-terminal domain IS_RS11300 PF01514 Secretory protein of YscJ/FliF family IS_RS11300 PF08345 Flagellar M-ring protein C-terminal IS_RS11305 PF02049 Flagellar hook-basal body complex protein FliE IS_RS11310 PF00534 Glycosyl transferases group 1 IS_RS11310 PF00535 Glycosyl transferase family 2 IS_RS11315 PF05050 Methyltransferase FkbM domain IS_RS11320 PF02348 Cytidylyltransferase IS_RS11360 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IS_RS11360 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IS_RS11370 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IS_RS11375 PF00158 Sigma-54 interaction domain IS_RS11375 PF02954 Bacterial regulatory protein, Fis family IS_RS11375 PF06490 Flagellar regulatory protein FleQ IS_RS11380 PF00072 Response regulator receiver domain IS_RS11380 PF01339 CheB methylesterase IS_RS11385 PF04552 Sigma-54, DNA binding domain IS_RS11385 PF00309 Sigma-54 factor, Activator interacting domain (AID) IS_RS11385 PF04963 Sigma-54 factor, core binding domain IS_RS11390 PF00072 Response regulator receiver domain IS_RS11390 PF00196 Bacterial regulatory proteins, luxR family IS_RS11405 PF02561 Flagellar protein FliS IS_RS11410 PF07195 Flagellar hook-associated protein 2 C-terminus IS_RS11410 PF07196 Flagellin hook IN motif IS_RS11410 PF02465 Flagellar hook-associated protein 2 N-terminus IS_RS11415 PF00700 Bacterial flagellin C-terminal helical region IS_RS11415 PF00669 Bacterial flagellin N-terminal helical region IS_RS11420 PF00669 Bacterial flagellin N-terminal helical region IS_RS11420 PF00700 Bacterial flagellin C-terminal helical region IS_RS11425 PF07196 Flagellin hook IN motif IS_RS11425 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IS_RS11430 PF10135 Rod binding protein IS_RS11430 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IS_RS11435 PF02119 Flagellar P-ring protein IS_RS11440 PF02107 Flagellar L-ring protein IS_RS11445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IS_RS11445 PF00460 Flagella basal body rod protein IS_RS11455 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IS_RS11455 PF00460 Flagella basal body rod protein IS_RS11460 PF07559 Flagellar basal body protein FlaE IS_RS11460 PF00460 Flagella basal body rod protein IS_RS11460 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IS_RS11465 PF03963 Flagellar hook capping protein - N-terminal region IS_RS11470 PF00460 Flagella basal body rod protein IS_RS11470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IS_RS11480 PF01584 CheW-like domain IS_RS11480 PF00072 Response regulator receiver domain IS_RS11500 PF00989 PAS fold IS_RS11500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS11500 PF13426 PAS domain IS_RS11500 PF13188 PAS domain IS_RS11500 PF00512 His Kinase A (phospho-acceptor) domain IS_RS11505 PF00990 Diguanylate cyclase, GGDEF domain IS_RS11505 PF00563 EAL domain IS_RS11505 PF03707 Bacterial signalling protein N terminal repeat IS_RS11510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS11510 PF07730 Histidine kinase IS_RS11515 PF00563 EAL domain IS_RS11515 PF00990 Diguanylate cyclase, GGDEF domain IS_RS11515 PF03707 Bacterial signalling protein N terminal repeat IS_RS11525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS11525 PF00672 HAMP domain IS_RS11525 PF12729 Four helix bundle sensory module for signal transduction IS_RS11530 PF04356 Protein of unknown function (DUF489) IS_RS11540 PF00293 NUDIX domain IS_RS11545 PF02617 ATP-dependent Clp protease adaptor protein ClpS IS_RS11550 PF10431 C-terminal, D2-small domain, of ClpB protein IS_RS11550 PF02861 Clp amino terminal domain, pathogenicity island component IS_RS11550 PF17871 AAA lid domain IS_RS11550 PF07724 AAA domain (Cdc48 subfamily) IS_RS11550 PF00004 ATPase family associated with various cellular activities (AAA) IS_RS11555 PF01176 Translation initiation factor 1A / IF-1 IS_RS11560 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IS_RS11575 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS11580 PF01580 FtsK/SpoIIIE family IS_RS11580 PF17854 FtsK alpha domain IS_RS11580 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IS_RS11580 PF09397 Ftsk gamma domain IS_RS11590 PF03548 Outer membrane lipoprotein carrier protein LolA IS_RS11600 PF00004 ATPase family associated with various cellular activities (AAA) IS_RS11600 PF12002 MgsA AAA+ ATPase C terminal IS_RS11600 PF16193 AAA C-terminal domain IS_RS11605 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IS_RS11610 PF00108 Thiolase, N-terminal domain IS_RS11610 PF02803 Thiolase, C-terminal domain IS_RS11615 PF00378 Enoyl-CoA hydratase/isomerase IS_RS11615 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IS_RS11615 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IS_RS11625 PF00334 Nucleoside diphosphate kinase IS_RS11630 PF04055 Radical SAM superfamily IS_RS11640 PF13464 Domain of unknown function (DUF4115) IS_RS11650 PF13360 PQQ-like domain IS_RS11650 PF01011 PQQ enzyme repeat IS_RS11655 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IS_RS11655 PF01926 50S ribosome-binding GTPase IS_RS11660 PF03453 MoeA N-terminal region (domain I and II) IS_RS11660 PF03454 MoeA C-terminal region (domain IV) IS_RS11660 PF00994 Probable molybdopterin binding domain IS_RS11665 PF00899 ThiF family IS_RS11695 PF00107 Zinc-binding dehydrogenase IS_RS11695 PF08240 Alcohol dehydrogenase GroES-like domain IS_RS11695 PF13823 Alcohol dehydrogenase GroES-associated IS_RS11705 PF03372 Endonuclease/Exonuclease/phosphatase family IS_RS11715 PF00994 Probable molybdopterin binding domain IS_RS11715 PF03453 MoeA N-terminal region (domain I and II) IS_RS11715 PF03454 MoeA C-terminal region (domain IV) IS_RS11720 PF12804 MobA-like NTP transferase domain IS_RS11745 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IS_RS11745 PF14824 Sirohaem biosynthesis protein central IS_RS11745 PF10414 Sirohaem synthase dimerisation region IS_RS11750 PF03861 ANTAR domain IS_RS11750 PF00072 Response regulator receiver domain IS_RS11760 PF07690 Major Facilitator Superfamily IS_RS11765 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS11765 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IS_RS11765 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IS_RS11765 PF04324 BFD-like [2Fe-2S] binding domain IS_RS11765 PF18267 Rubredoxin NAD+ reductase C-terminal domain IS_RS11770 PF11723 Homotrimeric ring hydroxylase IS_RS11770 PF00355 Rieske [2Fe-2S] domain IS_RS11775 PF04324 BFD-like [2Fe-2S] binding domain IS_RS11775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IS_RS11775 PF00384 Molybdopterin oxidoreductase IS_RS11775 PF01568 Molydopterin dinucleotide binding domain IS_RS11780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IS_RS11790 PF05974 Domain of unknown function (DUF892) IS_RS11810 PF00563 EAL domain IS_RS11810 PF00990 Diguanylate cyclase, GGDEF domain IS_RS11810 PF08448 PAS fold IS_RS11810 PF08447 PAS fold IS_RS11815 PF12951 Passenger-associated-transport-repeat IS_RS11820 PF00196 Bacterial regulatory proteins, luxR family IS_RS11820 PF00072 Response regulator receiver domain IS_RS11825 PF08448 PAS fold IS_RS11825 PF13426 PAS domain IS_RS11825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS11825 PF00512 His Kinase A (phospho-acceptor) domain IS_RS11825 PF00072 Response regulator receiver domain IS_RS11835 PF00873 AcrB/AcrD/AcrF family IS_RS11840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IS_RS11840 PF00529 HlyD membrane-fusion protein of T1SS IS_RS11845 PF00082 Subtilase family IS_RS11845 PF03797 Autotransporter beta-domain IS_RS11855 PF06580 Histidine kinase IS_RS11855 PF07694 5TMR of 5TMR-LYT IS_RS11855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS11860 PF04397 LytTr DNA-binding domain IS_RS11860 PF00072 Response regulator receiver domain IS_RS11865 PF00144 Beta-lactamase IS_RS11875 PF07995 Glucose / Sorbosone dehydrogenase IS_RS11880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IS_RS11905 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 IS_RS11910 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IS_RS11915 PF05638 Type VI secretion system effector, Hcp IS_RS11920 PF07024 ImpE protein IS_RS11925 PF04965 Gene 25-like lysozyme IS_RS11930 PF05947 Type VI secretion system, TssF IS_RS11940 PF17871 AAA lid domain IS_RS11940 PF07724 AAA domain (Cdc48 subfamily) IS_RS11940 PF00004 ATPase family associated with various cellular activities (AAA) IS_RS11940 PF10431 C-terminal, D2-small domain, of ClpB protein IS_RS11970 PF06715 Gp5 C-terminal repeat (3 copies) IS_RS11970 PF04717 Type VI secretion system, phage-baseplate injector IS_RS11985 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IS_RS11995 PF06761 Intracellular multiplication and human macrophage-killing IS_RS11995 PF06744 Type VI secretion protein IcmF C-terminal IS_RS11995 PF14331 ImcF-related N-terminal domain IS_RS12010 PF00069 Protein kinase domain IS_RS12020 PF06812 ImpA, N-terminal, type VI secretion system IS_RS12025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS12025 PF03466 LysR substrate binding domain IS_RS12030 PF00512 His Kinase A (phospho-acceptor) domain IS_RS12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS12035 PF00034 Cytochrome c IS_RS12035 PF03150 Di-haem cytochrome c peroxidase IS_RS12040 PF00486 Transcriptional regulatory protein, C terminal IS_RS12040 PF00072 Response regulator receiver domain IS_RS12050 PF05199 GMC oxidoreductase IS_RS12050 PF00732 GMC oxidoreductase IS_RS12055 PF00067 Cytochrome P450 IS_RS12060 PF00072 Response regulator receiver domain IS_RS12060 PF00196 Bacterial regulatory proteins, luxR family IS_RS12065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS12065 PF07730 Histidine kinase IS_RS12070 PF00196 Bacterial regulatory proteins, luxR family IS_RS12070 PF00072 Response regulator receiver domain IS_RS12080 PF13492 GAF domain IS_RS12080 PF13185 GAF domain IS_RS12080 PF07730 Histidine kinase IS_RS12080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS12085 PF03421 YopJ Serine/Threonine acetyltransferase IS_RS12090 PF00665 Integrase core domain IS_RS12090 PF13333 Integrase core domain IS_RS12090 PF13276 HTH-like domain IS_RS12140 PF10544 T5orf172 domain IS_RS12150 PF00270 DEAD/DEAH box helicase IS_RS12150 PF13749 Putative ATP-dependent DNA helicase recG C-terminal IS_RS12150 PF17191 RecG wedge domain IS_RS12165 PF03352 Methyladenine glycosylase IS_RS12180 PF03466 LysR substrate binding domain IS_RS12180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS12185 PF00248 Aldo/keto reductase family IS_RS12190 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) IS_RS12195 PF00361 Proton-conducting membrane transporter IS_RS12195 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus IS_RS12195 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IS_RS12200 PF03466 LysR substrate binding domain IS_RS12200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS12205 PF14759 Reductase C-terminal IS_RS12205 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS12210 PF00111 2Fe-2S iron-sulfur cluster binding domain IS_RS12215 PF00067 Cytochrome P450 IS_RS12220 PF14525 AraC-binding-like domain IS_RS12220 PF12833 Helix-turn-helix domain IS_RS12225 PF03601 Conserved hypothetical protein 698 IS_RS12230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS12230 PF03466 LysR substrate binding domain IS_RS12250 PF00072 Response regulator receiver domain IS_RS12250 PF00196 Bacterial regulatory proteins, luxR family IS_RS12255 PF07730 Histidine kinase IS_RS12255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS12265 PF00857 Isochorismatase family IS_RS12275 PF07969 Amidohydrolase family IS_RS12280 PF05977 Transmembrane secretion effector IS_RS12295 PF00561 alpha/beta hydrolase fold IS_RS12300 PF01566 Natural resistance-associated macrophage protein IS_RS12305 PF02742 Iron dependent repressor, metal binding and dimerisation domain IS_RS12305 PF01325 Iron dependent repressor, N-terminal DNA binding domain IS_RS12310 PF14437 MafB19-like deaminase IS_RS12315 PF00929 Exonuclease IS_RS12320 PF05552 Conserved TM helix IS_RS12320 PF00924 Mechanosensitive ion channel IS_RS12325 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IS_RS12325 PF00391 PEP-utilising enzyme, mobile domain IS_RS12325 PF02896 PEP-utilising enzyme, TIM barrel domain IS_RS12330 PF03618 Kinase/pyrophosphorylase IS_RS12350 PF01066 CDP-alcohol phosphatidyltransferase IS_RS12360 PF00561 alpha/beta hydrolase fold IS_RS12375 PF00355 Rieske [2Fe-2S] domain IS_RS12375 PF01266 FAD dependent oxidoreductase IS_RS12385 PF09371 Tex-like protein N-terminal domain IS_RS12385 PF00575 S1 RNA binding domain IS_RS12385 PF17674 HHH domain IS_RS12385 PF16921 Tex protein YqgF-like domain IS_RS12390 PF09308 LuxQ, periplasmic IS_RS12390 PF00512 His Kinase A (phospho-acceptor) domain IS_RS12390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS12390 PF00072 Response regulator receiver domain IS_RS12405 PF00589 Phage integrase family IS_RS12405 PF13356 Arm DNA-binding domain IS_RS12455 PF00034 Cytochrome c IS_RS12465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IS_RS12470 PF00873 AcrB/AcrD/AcrF family IS_RS12475 PF00873 AcrB/AcrD/AcrF family IS_RS12480 PF01081 KDPG and KHG aldolase IS_RS12485 PF00920 Dehydratase family IS_RS12490 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IS_RS12495 PF02685 Glucokinase IS_RS12500 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IS_RS12500 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IS_RS12505 PF00005 ABC transporter IS_RS12505 PF17912 MalK OB fold domain IS_RS12510 PF01571 Aminomethyltransferase folate-binding domain IS_RS12520 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IS_RS12525 PF02910 Fumarate reductase flavoprotein C-term IS_RS12525 PF00890 FAD binding domain IS_RS12535 PF13085 2Fe-2S iron-sulfur cluster binding domain IS_RS12540 PF03937 Flavinator of succinate dehydrogenase IS_RS12550 PF02687 FtsX-like permease family IS_RS12550 PF12704 MacB-like periplasmic core domain IS_RS12555 PF00005 ABC transporter IS_RS12565 PF00753 Metallo-beta-lactamase superfamily IS_RS12565 PF03772 Competence protein IS_RS12570 PF01618 MotA/TolQ/ExbB proton channel family IS_RS12580 PF00005 ABC transporter IS_RS12580 PF00664 ABC transporter transmembrane region IS_RS12585 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IS_RS12590 PF02348 Cytidylyltransferase IS_RS12595 PF01451 Low molecular weight phosphotyrosine protein phosphatase IS_RS12605 PF08459 UvrC Helix-hairpin-helix N-terminal IS_RS12605 PF01541 GIY-YIG catalytic domain IS_RS12605 PF02151 UvrB/uvrC motif IS_RS12610 PF01066 CDP-alcohol phosphatidyltransferase IS_RS12620 PF00589 Phage integrase family IS_RS12620 PF13356 Arm DNA-binding domain IS_RS12625 PF13276 HTH-like domain IS_RS12625 PF00665 Integrase core domain IS_RS12625 PF13333 Integrase core domain IS_RS12670 PF00665 Integrase core domain IS_RS12670 PF13936 Helix-turn-helix domain IS_RS12680 PF13700 Domain of unknown function (DUF4158) IS_RS12680 PF01526 Tn3 transposase DDE domain IS_RS12735 PF00145 C-5 cytosine-specific DNA methylase IS_RS12740 PF01131 DNA topoisomerase IS_RS12740 PF01751 Toprim domain IS_RS12745 PF00436 Single-strand binding protein family IS_RS12785 PF13276 HTH-like domain IS_RS12785 PF13333 Integrase core domain IS_RS12785 PF00665 Integrase core domain IS_RS12805 PF13356 Arm DNA-binding domain IS_RS12805 PF00589 Phage integrase family IS_RS12815 PF01381 Helix-turn-helix IS_RS12820 PF03466 LysR substrate binding domain IS_RS12820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS12830 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IS_RS12830 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS12835 PF01925 Sulfite exporter TauE/SafE IS_RS12845 PF13098 Thioredoxin-like domain IS_RS12850 PF08534 Redoxin IS_RS12855 PF02683 Cytochrome C biogenesis protein transmembrane region IS_RS12855 PF11412 Disulphide bond corrector protein DsbC IS_RS12860 PF00072 Response regulator receiver domain IS_RS12860 PF00486 Transcriptional regulatory protein, C terminal IS_RS12865 PF08521 Two-component sensor kinase N-terminal IS_RS12865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS12865 PF00512 His Kinase A (phospho-acceptor) domain IS_RS12870 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS12880 PF00085 Thioredoxin IS_RS12885 PF01022 Bacterial regulatory protein, arsR family IS_RS12890 PF01323 DSBA-like thioredoxin domain IS_RS12890 PF00085 Thioredoxin IS_RS12895 PF12706 Beta-lactamase superfamily domain IS_RS12905 PF03595 Voltage-dependent anion channel IS_RS12915 PF13610 DDE domain IS_RS12920 PF13700 Domain of unknown function (DUF4158) IS_RS12920 PF01526 Tn3 transposase DDE domain IS_RS12930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS12930 PF03466 LysR substrate binding domain IS_RS12935 PF03167 Uracil DNA glycosylase superfamily IS_RS12940 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase IS_RS12945 PF01636 Phosphotransferase enzyme family IS_RS12950 PF02796 Helix-turn-helix domain of resolvase IS_RS12950 PF00239 Resolvase, N terminal domain IS_RS12960 PF13610 DDE domain IS_RS12975 PF00155 Aminotransferase class I and II IS_RS12980 PF08240 Alcohol dehydrogenase GroES-like domain IS_RS12980 PF00107 Zinc-binding dehydrogenase IS_RS12985 PF07690 Major Facilitator Superfamily IS_RS12990 PF00376 MerR family regulatory protein IS_RS12990 PF09278 MerR, DNA binding IS_RS12995 PF00403 Heavy-metal-associated domain IS_RS13000 PF01022 Bacterial regulatory protein, arsR family IS_RS13005 PF01545 Cation efflux family IS_RS13015 PF13610 DDE domain IS_RS13060 PF13700 Domain of unknown function (DUF4158) IS_RS13060 PF01526 Tn3 transposase DDE domain IS_RS13070 PF01527 Transposase IS_RS13075 PF13276 HTH-like domain IS_RS13075 PF13683 Integrase core domain IS_RS13085 PF13610 DDE domain IS_RS13090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS13090 PF03466 LysR substrate binding domain IS_RS13145 PF04002 RadC-like JAB domain IS_RS13240 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IS_RS13240 PF00034 Cytochrome c IS_RS13345 PF00145 C-5 cytosine-specific DNA methylase IS_RS13350 PF01751 Toprim domain IS_RS13350 PF01131 DNA topoisomerase IS_RS13355 PF00436 Single-strand binding protein family IS_RS13390 PF13614 AAA domain IS_RS13410 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IS_RS13410 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IS_RS13410 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IS_RS13420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IS_RS13430 PF00581 Rhodanese-like domain IS_RS13430 PF17773 UPF0176 acylphosphatase like domain IS_RS13435 PF00072 Response regulator receiver domain IS_RS13435 PF00196 Bacterial regulatory proteins, luxR family IS_RS13440 PF10150 Ribonuclease E/G family IS_RS13440 PF00575 S1 RNA binding domain IS_RS13440 PF12111 Polyribonucleotide phosphorylase C terminal IS_RS13445 PF01479 S4 domain IS_RS13445 PF00849 RNA pseudouridylate synthase IS_RS13450 PF11737 Protein of unknown function (DUF3300) IS_RS13455 PF02535 ZIP Zinc transporter IS_RS13465 PF01329 Pterin 4 alpha carbinolamine dehydratase IS_RS13470 PF01106 NifU-like domain IS_RS13485 PF00529 HlyD membrane-fusion protein of T1SS IS_RS13485 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IS_RS13490 PF00873 AcrB/AcrD/AcrF family IS_RS13495 PF05598 Transposase domain (DUF772) IS_RS13520 PF01526 Tn3 transposase DDE domain IS_RS13520 PF13700 Domain of unknown function (DUF4158) IS_RS13525 PF13406 Transglycosylase SLT domain IS_RS13530 PF01925 Sulfite exporter TauE/SafE IS_RS13545 PF04143 Sulphur transport IS_RS13550 PF00753 Metallo-beta-lactamase superfamily IS_RS13560 PF07859 alpha/beta hydrolase fold IS_RS13660 PF17091 Inovirus G7P protein IS_RS13665 PF02303 Helix-destabilising protein IS_RS13695 PF01695 IstB-like ATP binding protein IS_RS13705 PF13333 Integrase core domain IS_RS13705 PF00665 Integrase core domain IS_RS13705 PF13276 HTH-like domain IS_RS13735 PF13356 Arm DNA-binding domain IS_RS13735 PF00589 Phage integrase family IS_RS13740 PF00958 GMP synthase C terminal domain IS_RS13740 PF00117 Glutamine amidotransferase class-I IS_RS13740 PF02540 NAD synthase IS_RS13745 PF00571 CBS domain IS_RS13745 PF00478 IMP dehydrogenase / GMP reductase domain IS_RS13750 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IS_RS13750 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IS_RS13760 PF00999 Sodium/hydrogen exchanger family IS_RS13760 PF02254 TrkA-N domain IS_RS13765 PF00483 Nucleotidyl transferase IS_RS13770 PF02719 Polysaccharide biosynthesis protein IS_RS13775 PF00953 Glycosyl transferase family 4 IS_RS13780 PF18073 Rubredoxin metal binding domain IS_RS13790 PF00216 Bacterial DNA-binding protein IS_RS13795 PF00575 S1 RNA binding domain IS_RS13800 PF02224 Cytidylate kinase IS_RS13805 PF00444 Ribosomal protein L36 IS_RS13815 PF04371 Porphyromonas-type peptidyl-arginine deiminase IS_RS13820 PF00795 Carbon-nitrogen hydrolase IS_RS13845 PF00528 Binding-protein-dependent transport system inner membrane component IS_RS13850 PF00528 Binding-protein-dependent transport system inner membrane component IS_RS13870 PF00356 Bacterial regulatory proteins, lacI family IS_RS13880 PF03795 YCII-related domain IS_RS13885 PF02616 Segregation and condensation protein ScpA IS_RS13890 PF04079 Segregation and condensation complex subunit ScpB IS_RS13895 PF01479 S4 domain IS_RS13895 PF00849 RNA pseudouridylate synthase IS_RS13910 PF00795 Carbon-nitrogen hydrolase IS_RS13915 PF00155 Aminotransferase class I and II IS_RS13920 PF00005 ABC transporter IS_RS13925 PF03379 CcmB protein IS_RS13930 PF01578 Cytochrome C assembly protein IS_RS13940 PF03100 CcmE IS_RS13945 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IS_RS13945 PF01578 Cytochrome C assembly protein IS_RS13950 PF08534 Redoxin IS_RS13955 PF03918 Cytochrome C biogenesis protein IS_RS13965 PF00561 alpha/beta hydrolase fold IS_RS13970 PF00313 'Cold-shock' DNA-binding domain IS_RS13975 PF00005 ABC transporter IS_RS13975 PF00664 ABC transporter transmembrane region IS_RS13980 PF00005 ABC transporter IS_RS13980 PF00664 ABC transporter transmembrane region IS_RS13985 PF01654 Cytochrome bd terminal oxidase subunit I IS_RS13990 PF02322 Cytochrome bd terminal oxidase subunit II IS_RS14010 PF02129 X-Pro dipeptidyl-peptidase (S15 family) IS_RS14010 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain IS_RS14020 PF00171 Aldehyde dehydrogenase family IS_RS14025 PF00696 Amino acid kinase family IS_RS14025 PF01472 PUA domain IS_RS14035 PF00206 Lyase IS_RS14040 PF01118 Semialdehyde dehydrogenase, NAD binding domain IS_RS14050 PF00696 Amino acid kinase family IS_RS14050 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase IS_RS14055 PF07687 Peptidase dimerisation domain IS_RS14055 PF01546 Peptidase family M20/M25/M40 IS_RS14065 PF00764 Arginosuccinate synthase IS_RS14070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IS_RS14070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IS_RS14080 PF01406 tRNA synthetases class I (C) catalytic domain IS_RS14080 PF09190 DALR domain IS_RS14085 PF02657 Fe-S metabolism associated domain IS_RS14095 PF01258 Prokaryotic dksA/traR C4-type zinc finger IS_RS14105 PF01809 Putative membrane protein insertion efficiency factor IS_RS14110 PF01979 Amidohydrolase family IS_RS14115 PF01551 Peptidase family M23 IS_RS14115 PF08460 Bacterial SH3 domain IS_RS14130 PF06751 Ethanolamine ammonia lyase large subunit (EutB) IS_RS14145 PF00753 Metallo-beta-lactamase superfamily IS_RS14160 PF00295 Glycosyl hydrolases family 28 IS_RS14170 PF13419 Haloacid dehalogenase-like hydrolase IS_RS14180 PF01979 Amidohydrolase family IS_RS14190 PF09285 Elongation factor P, C-terminal IS_RS14190 PF08207 Elongation factor P (EF-P) KOW-like domain IS_RS14190 PF01132 Elongation factor P (EF-P) OB domain IS_RS14195 PF04055 Radical SAM superfamily IS_RS14200 PF00990 Diguanylate cyclase, GGDEF domain IS_RS14200 PF03707 Bacterial signalling protein N terminal repeat IS_RS14200 PF13188 PAS domain IS_RS14200 PF00563 EAL domain IS_RS14210 PF00588 SpoU rRNA Methylase family IS_RS14215 PF00459 Inositol monophosphatase family IS_RS14220 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IS_RS14220 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IS_RS14225 PF00545 ribonuclease IS_RS14235 PF12848 ABC transporter IS_RS14235 PF16326 ABC transporter C-terminal domain IS_RS14235 PF00005 ABC transporter IS_RS14240 PF00271 Helicase conserved C-terminal domain IS_RS14240 PF00270 DEAD/DEAH box helicase IS_RS14240 PF03880 DbpA RNA binding domain IS_RS14245 PF00156 Phosphoribosyl transferase domain IS_RS14250 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IS_RS14255 PF00135 Carboxylesterase family IS_RS14260 PF02798 Glutathione S-transferase, N-terminal domain IS_RS14260 PF14497 Glutathione S-transferase, C-terminal domain IS_RS14265 PF00313 'Cold-shock' DNA-binding domain IS_RS14270 PF07152 YaeQ protein IS_RS14280 PF00990 Diguanylate cyclase, GGDEF domain IS_RS14280 PF00563 EAL domain IS_RS14280 PF00072 Response regulator receiver domain IS_RS14285 PF01435 Peptidase family M48 IS_RS14290 PF00749 tRNA synthetases class I (E and Q), catalytic domain IS_RS14295 PF00106 short chain dehydrogenase IS_RS14300 PF05233 PHB accumulation regulatory domain IS_RS14300 PF07879 PHB/PHA accumulation regulator DNA-binding domain IS_RS14315 PF08676 MutL C terminal dimerisation domain IS_RS14315 PF01119 DNA mismatch repair protein, C-terminal domain IS_RS14320 PF11741 AMIN domain IS_RS14320 PF01520 N-acetylmuramoyl-L-alanine amidase IS_RS14325 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IS_RS14330 PF03853 YjeF-related protein N-terminus IS_RS14330 PF01256 Carbohydrate kinase IS_RS14335 PF08331 Domain of unknown function (DUF1730) IS_RS14340 PF02601 Exonuclease VII, large subunit IS_RS14340 PF13742 OB-fold nucleic acid binding domain IS_RS14350 PF03781 Sulfatase-modifying factor enzyme 1 IS_RS14355 PF00570 HRDC domain IS_RS14355 PF01612 3'-5' exonuclease IS_RS14360 PF13298 DNA polymerase Ligase (LigD) IS_RS14360 PF04679 ATP dependent DNA ligase C terminal region IS_RS14360 PF01068 ATP dependent DNA ligase domain IS_RS14380 PF00589 Phage integrase family IS_RS14380 PF13356 Arm DNA-binding domain IS_RS14390 PF01527 Transposase IS_RS14395 PF13683 Integrase core domain IS_RS14395 PF13276 HTH-like domain IS_RS14400 PF01381 Helix-turn-helix IS_RS14425 PF01584 CheW-like domain IS_RS14430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS14430 PF00672 HAMP domain IS_RS14430 PF02743 Cache domain IS_RS14435 PF02245 Methylpurine-DNA glycosylase (MPG) IS_RS14440 PF00270 DEAD/DEAH box helicase IS_RS14440 PF08494 DEAD/H associated IS_RS14440 PF00271 Helicase conserved C-terminal domain IS_RS14455 PF04386 Stringent starvation protein B IS_RS14460 PF00043 Glutathione S-transferase, C-terminal domain IS_RS14460 PF02798 Glutathione S-transferase, N-terminal domain IS_RS14465 PF02167 Cytochrome C1 family IS_RS14470 PF00033 Cytochrome b/b6/petB IS_RS14470 PF00032 Cytochrome b(C-terminal)/b6/petD IS_RS14475 PF00355 Rieske [2Fe-2S] domain IS_RS14475 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IS_RS14480 PF01464 Transglycosylase SLT domain IS_RS14495 PF01938 TRAM domain IS_RS14495 PF00919 Uncharacterized protein family UPF0004 IS_RS14495 PF04055 Radical SAM superfamily IS_RS14500 PF02562 PhoH-like protein IS_RS14510 PF02130 Uncharacterized protein family UPF0054 IS_RS14520 PF00571 CBS domain IS_RS14520 PF03471 Transporter associated domain IS_RS14535 PF00171 Aldehyde dehydrogenase family IS_RS14545 PF00528 Binding-protein-dependent transport system inner membrane component IS_RS14550 PF00528 Binding-protein-dependent transport system inner membrane component IS_RS14560 PF02321 Outer membrane efflux protein IS_RS14565 PF07690 Major Facilitator Superfamily IS_RS14570 PF13533 Biotin-lipoyl like IS_RS14575 PF13416 Bacterial extracellular solute-binding protein IS_RS14580 PF00202 Aminotransferase class-III IS_RS14585 PF00120 Glutamine synthetase, catalytic domain IS_RS14590 PF07722 Peptidase C26 IS_RS14595 PF00120 Glutamine synthetase, catalytic domain IS_RS14600 PF01266 FAD dependent oxidoreductase IS_RS14605 PF00072 Response regulator receiver domain IS_RS14605 PF00990 Diguanylate cyclase, GGDEF domain IS_RS14610 PF01814 Hemerythrin HHE cation binding domain IS_RS14615 PF07690 Major Facilitator Superfamily IS_RS14615 PF00083 Sugar (and other) transporter IS_RS14625 PF00384 Molybdopterin oxidoreductase IS_RS14630 PF02634 FdhD/NarQ family IS_RS14635 PF07690 Major Facilitator Superfamily IS_RS14640 PF00202 Aminotransferase class-III IS_RS14650 PF04286 Protein of unknown function (DUF445) IS_RS14655 PF00072 Response regulator receiver domain IS_RS14655 PF00512 His Kinase A (phospho-acceptor) domain IS_RS14655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS14655 PF00672 HAMP domain IS_RS14655 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IS_RS14655 PF01627 Hpt domain IS_RS14660 PF00072 Response regulator receiver domain IS_RS14665 PF07690 Major Facilitator Superfamily IS_RS14670 PF05088 Bacterial NAD-glutamate dehydrogenase IS_RS14680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IS_RS14680 PF00529 HlyD membrane-fusion protein of T1SS IS_RS14685 PF00873 AcrB/AcrD/AcrF family IS_RS14690 PF00356 Bacterial regulatory proteins, lacI family IS_RS14695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IS_RS14695 PF05524 PEP-utilising enzyme, N-terminal IS_RS14695 PF00381 PTS HPr component phosphorylation site IS_RS14695 PF02896 PEP-utilising enzyme, TIM barrel domain IS_RS14695 PF00391 PEP-utilising enzyme, mobile domain IS_RS14700 PF00294 pfkB family carbohydrate kinase IS_RS14705 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IS_RS14745 PF00665 Integrase core domain IS_RS14745 PF13276 HTH-like domain IS_RS14745 PF13333 Integrase core domain IS_RS14755 PF07549 SecD/SecF GG Motif IS_RS14755 PF02355 Protein export membrane protein IS_RS14760 PF07549 SecD/SecF GG Motif IS_RS14760 PF13721 SecD export protein N-terminal TM region IS_RS14760 PF02355 Protein export membrane protein IS_RS14765 PF02699 Preprotein translocase subunit IS_RS14770 PF01702 Queuine tRNA-ribosyltransferase IS_RS14775 PF02547 Queuosine biosynthesis protein IS_RS14820 PF00759 Glycosyl hydrolase family 9 IS_RS14820 PF02927 Cellulase N-terminal ig-like domain IS_RS14835 PF00037 4Fe-4S binding domain IS_RS14850 PF01467 Cytidylyltransferase-like IS_RS14860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS14860 PF00183 Hsp90 protein IS_RS14875 PF05598 Transposase domain (DUF772) IS_RS14895 PF01527 Transposase IS_RS14900 PF13276 HTH-like domain IS_RS14900 PF13683 Integrase core domain IS_RS14915 PF07715 TonB-dependent Receptor Plug Domain IS_RS14915 PF00593 TonB dependent receptor IS_RS14925 PF04616 Glycosyl hydrolases family 43 IS_RS14930 PF07532 Bacterial Ig-like domain (group 4) IS_RS14935 PF07715 TonB-dependent Receptor Plug Domain IS_RS14935 PF00593 TonB dependent receptor IS_RS14950 PF09286 Pro-kumamolisin, activation domain IS_RS14950 PF00082 Subtilase family IS_RS14970 PF13520 Amino acid permease IS_RS14985 PF00557 Metallopeptidase family M24 IS_RS14985 PF01321 Creatinase/Prolidase N-terminal domain IS_RS14990 PF00171 Aldehyde dehydrogenase family IS_RS14995 PF00701 Dihydrodipicolinate synthetase family IS_RS15000 PF04324 BFD-like [2Fe-2S] binding domain IS_RS15000 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS15010 PF01266 FAD dependent oxidoreductase IS_RS15015 PF05544 Proline racemase IS_RS15025 PF00448 SRP54-type protein, GTPase domain IS_RS15025 PF02881 SRP54-type protein, helical bundle domain IS_RS15030 PF00633 Helix-hairpin-helix motif IS_RS15030 PF00730 HhH-GPD superfamily base excision DNA repair protein IS_RS15030 PF10576 Iron-sulfur binding domain of endonuclease III IS_RS15030 PF14815 NUDIX domain IS_RS15035 PF04362 Bacterial Fe(2+) trafficking IS_RS15040 PF13426 PAS domain IS_RS15040 PF00072 Response regulator receiver domain IS_RS15040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS15070 PF08212 Lipocalin-like domain IS_RS15080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IS_RS15080 PF12806 Acetyl-CoA dehydrogenase C-terminal like IS_RS15080 PF02770 Acyl-CoA dehydrogenase, middle domain IS_RS15080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IS_RS15090 PF02780 Transketolase, C-terminal domain IS_RS15090 PF02779 Transketolase, pyrimidine binding domain IS_RS15090 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IS_RS15110 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family IS_RS15115 PF00753 Metallo-beta-lactamase superfamily IS_RS15115 PF16123 Hydroxyacylglutathione hydrolase C-terminus IS_RS15120 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IS_RS15120 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IS_RS15130 PF13276 HTH-like domain IS_RS15130 PF13683 Integrase core domain IS_RS15135 PF01527 Transposase IS_RS15150 PF03808 Glycosyl transferase WecB/TagA/CpsF family IS_RS15165 PF14667 Polysaccharide biosynthesis C-terminal domain IS_RS15175 PF00534 Glycosyl transferases group 1 IS_RS15175 PF13439 Glycosyltransferase Family 4 IS_RS15195 PF02397 Bacterial sugar transferase IS_RS15215 PF13411 MerR HTH family regulatory protein IS_RS15220 PF00216 Bacterial DNA-binding protein IS_RS15225 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IS_RS15225 PF01588 Putative tRNA binding domain IS_RS15225 PF03147 Ferredoxin-fold anticodon binding domain IS_RS15225 PF03484 tRNA synthetase B5 domain IS_RS15225 PF03483 B3/4 domain IS_RS15230 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IS_RS15230 PF01409 tRNA synthetases class II core domain (F) IS_RS15235 PF00453 Ribosomal protein L20 IS_RS15240 PF01632 Ribosomal protein L35 IS_RS15245 PF00707 Translation initiation factor IF-3, C-terminal domain IS_RS15245 PF05198 Translation initiation factor IF-3, N-terminal domain IS_RS15250 PF02824 TGS domain IS_RS15250 PF03129 Anticodon binding domain IS_RS15250 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IS_RS15250 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IS_RS15255 PF00356 Bacterial regulatory proteins, lacI family IS_RS15260 PF00686 Starch binding domain IS_RS15260 PF00128 Alpha amylase, catalytic domain IS_RS15265 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IS_RS15275 PF10566 Glycoside hydrolase 97 IS_RS15275 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation IS_RS15275 PF14508 Glycosyl-hydrolase 97 N-terminal IS_RS15290 PF00128 Alpha amylase, catalytic domain IS_RS15300 PF01527 Transposase IS_RS15305 PF13276 HTH-like domain IS_RS15305 PF13683 Integrase core domain IS_RS15320 PF02534 Type IV secretory system Conjugative DNA transfer IS_RS15340 PF17757 UvrB interaction domain IS_RS15340 PF02151 UvrB/uvrC motif IS_RS15340 PF04851 Type III restriction enzyme, res subunit IS_RS15340 PF00271 Helicase conserved C-terminal domain IS_RS15340 PF12344 Ultra-violet resistance protein B IS_RS15360 PF05567 Neisseria PilC beta-propeller domain IS_RS15365 PF13683 Integrase core domain IS_RS15365 PF13276 HTH-like domain IS_RS15370 PF01527 Transposase IS_RS15390 PF11892 Domain of unknown function (DUF3412) IS_RS15390 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases IS_RS15390 PF03641 Possible lysine decarboxylase IS_RS15395 PF00593 TonB dependent receptor IS_RS15400 PF01914 MarC family integral membrane protein IS_RS15410 PF00462 Glutaredoxin IS_RS15415 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IS_RS15415 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IS_RS15420 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IS_RS15420 PF02222 ATP-grasp domain IS_RS15425 PF00731 AIR carboxylase IS_RS15435 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IS_RS15435 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IS_RS15445 PF03725 3' exoribonuclease family, domain 2 IS_RS15445 PF00575 S1 RNA binding domain IS_RS15445 PF01138 3' exoribonuclease family, domain 1 IS_RS15445 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IS_RS15445 PF00013 KH domain IS_RS15450 PF00312 Ribosomal protein S15 IS_RS15455 PF16198 tRNA pseudouridylate synthase B C-terminal domain IS_RS15455 PF01509 TruB family pseudouridylate synthase (N terminal domain) IS_RS15455 PF09157 Pseudouridine synthase II TruB, C-terminal IS_RS15460 PF02033 Ribosome-binding factor A IS_RS15465 PF11987 Translation-initiation factor 2 IS_RS15465 PF08364 Bacterial translation initiation factor IF-2 associated region IS_RS15465 PF04760 Translation initiation factor IF-2, N-terminal region IS_RS15465 PF00009 Elongation factor Tu GTP binding domain IS_RS15470 PF08529 NusA N-terminal domain IS_RS15470 PF13184 NusA-like KH domain IS_RS15470 PF00575 S1 RNA binding domain IS_RS15475 PF02576 RimP N-terminal domain IS_RS15475 PF17384 RimP C-terminal SH3 domain IS_RS15485 PF00361 Proton-conducting membrane transporter IS_RS15490 PF00361 Proton-conducting membrane transporter IS_RS15490 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus IS_RS15495 PF00361 Proton-conducting membrane transporter IS_RS15495 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IS_RS15500 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IS_RS15505 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IS_RS15510 PF12838 4Fe-4S dicluster domain IS_RS15515 PF00146 NADH dehydrogenase IS_RS15520 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IS_RS15520 PF00384 Molybdopterin oxidoreductase IS_RS15520 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal IS_RS15525 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IS_RS15525 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IS_RS15525 PF10531 SLBB domain IS_RS15535 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IS_RS15540 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IS_RS15545 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IS_RS15550 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IS_RS15565 PF00121 Triosephosphate isomerase IS_RS15570 PF00106 short chain dehydrogenase IS_RS15590 PF00990 Diguanylate cyclase, GGDEF domain IS_RS15590 PF00563 EAL domain IS_RS15590 PF03707 Bacterial signalling protein N terminal repeat IS_RS15610 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IS_RS15610 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IS_RS15610 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IS_RS15610 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IS_RS15615 PF01039 Carboxyl transferase domain IS_RS15615 PF17848 Acetyl-coA carboxylase zinc finger domain IS_RS15620 PF00290 Tryptophan synthase alpha chain IS_RS15630 PF13333 Integrase core domain IS_RS15630 PF13276 HTH-like domain IS_RS15630 PF00665 Integrase core domain IS_RS15645 PF00291 Pyridoxal-phosphate dependent enzyme IS_RS15650 PF03466 LysR substrate binding domain IS_RS15650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS15655 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IS_RS15660 PF01416 tRNA pseudouridine synthase IS_RS15680 PF01118 Semialdehyde dehydrogenase, NAD binding domain IS_RS15680 PF02774 Semialdehyde dehydrogenase, dimerisation domain IS_RS15685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IS_RS15685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IS_RS15690 PF01264 Chorismate synthase IS_RS15695 PF05175 Methyltransferase small domain IS_RS15700 PF02630 SCO1/SenC IS_RS15705 PF02666 Phosphatidylserine decarboxylase IS_RS15715 PF05872 Bacterial protein of unknown function (DUF853) IS_RS15720 PF00293 NUDIX domain IS_RS15735 PF03449 Transcription elongation factor, N-terminal IS_RS15735 PF01272 Transcription elongation factor, GreA/GreB, C-term IS_RS15740 PF18693 TRAM domain IS_RS15740 PF04055 Radical SAM superfamily IS_RS15740 PF00919 Uncharacterized protein family UPF0004 IS_RS15745 PF01738 Dienelactone hydrolase family IS_RS15765 PF00692 dUTPase IS_RS15770 PF10609 NUBPL iron-transfer P-loop NTPase IS_RS15775 PF00593 TonB dependent receptor IS_RS15775 PF07715 TonB-dependent Receptor Plug Domain IS_RS15790 PF01431 Peptidase family M13 IS_RS15790 PF05649 Peptidase family M13 IS_RS15795 PF01431 Peptidase family M13 IS_RS15795 PF05649 Peptidase family M13 IS_RS15815 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS15815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IS_RS15820 PF01266 FAD dependent oxidoreductase IS_RS15825 PF04235 Protein of unknown function (DUF418) IS_RS15830 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IS_RS15835 PF00877 NlpC/P60 family IS_RS15840 PF00877 NlpC/P60 family IS_RS15850 PF13649 Methyltransferase domain IS_RS15855 PF00375 Sodium:dicarboxylate symporter family IS_RS15860 PF00245 Alkaline phosphatase IS_RS15865 PF11734 TilS substrate C-terminal domain IS_RS15865 PF09179 TilS substrate binding domain IS_RS15865 PF01171 PP-loop family IS_RS15870 PF02609 Exonuclease VII small subunit IS_RS15875 PF00348 Polyprenyl synthetase IS_RS15880 PF14521 Lysine-specific metallo-endopeptidase IS_RS15890 PF01523 Putative modulator of DNA gyrase IS_RS15895 PF04751 Protein of unknown function (DUF615) IS_RS15900 PF01523 Putative modulator of DNA gyrase IS_RS15915 PF10150 Ribonuclease E/G family IS_RS15915 PF00575 S1 RNA binding domain IS_RS15920 PF02545 Maf-like protein IS_RS15925 PF04402 Protein of unknown function (DUF541) IS_RS15935 PF02590 Predicted SPOUT methyltransferase IS_RS15950 PF01467 Cytidylyltransferase-like IS_RS15965 PF13603 Leucyl-tRNA synthetase, Domain 2 IS_RS15965 PF00133 tRNA synthetases class I (I, L, M and V) IS_RS15965 PF08264 Anticodon-binding domain of tRNA IS_RS15975 PF00085 Thioredoxin IS_RS16005 PF04070 Domain of unknown function (DUF378) IS_RS16010 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IS_RS16020 PF03466 LysR substrate binding domain IS_RS16020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS16025 PF01022 Bacterial regulatory protein, arsR family IS_RS16060 PF00664 ABC transporter transmembrane region IS_RS16060 PF00005 ABC transporter IS_RS16070 PF00873 AcrB/AcrD/AcrF family IS_RS16085 PF02321 Outer membrane efflux protein IS_RS16090 PF00072 Response regulator receiver domain IS_RS16090 PF00486 Transcriptional regulatory protein, C terminal IS_RS16100 PF00999 Sodium/hydrogen exchanger family IS_RS16105 PF00144 Beta-lactamase IS_RS16110 PF03737 Aldolase/RraA IS_RS16130 PF00990 Diguanylate cyclase, GGDEF domain IS_RS16135 PF00849 RNA pseudouridylate synthase IS_RS16135 PF01479 S4 domain IS_RS16140 PF08448 PAS fold IS_RS16140 PF00563 EAL domain IS_RS16140 PF00990 Diguanylate cyclase, GGDEF domain IS_RS16145 PF00271 Helicase conserved C-terminal domain IS_RS16145 PF03880 DbpA RNA binding domain IS_RS16145 PF00270 DEAD/DEAH box helicase IS_RS16150 PF04542 Sigma-70 region 2 IS_RS16150 PF04539 Sigma-70 region 3 IS_RS16150 PF04545 Sigma-70, region 4 IS_RS16195 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IS_RS16195 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IS_RS16205 PF00654 Voltage gated chloride channel IS_RS16220 PF00593 TonB dependent receptor IS_RS16220 PF07715 TonB-dependent Receptor Plug Domain IS_RS16230 PF00082 Subtilase family IS_RS16230 PF01483 Proprotein convertase P-domain IS_RS16240 PF00248 Aldo/keto reductase family IS_RS16245 PF07690 Major Facilitator Superfamily IS_RS16250 PF03466 LysR substrate binding domain IS_RS16250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS16260 PF06719 AraC-type transcriptional regulator N-terminus IS_RS16260 PF12833 Helix-turn-helix domain IS_RS16270 PF03466 LysR substrate binding domain IS_RS16270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS16275 PF00440 Bacterial regulatory proteins, tetR family IS_RS16275 PF16859 Tetracyclin repressor-like, C-terminal domain IS_RS16280 PF02321 Outer membrane efflux protein IS_RS16285 PF00873 AcrB/AcrD/AcrF family IS_RS16290 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IS_RS16290 PF00529 HlyD membrane-fusion protein of T1SS IS_RS16300 PF01475 Ferric uptake regulator family IS_RS16305 PF00749 tRNA synthetases class I (E and Q), catalytic domain IS_RS16330 PF06123 Inner membrane protein CreD IS_RS16345 PF00512 His Kinase A (phospho-acceptor) domain IS_RS16345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS16345 PF00672 HAMP domain IS_RS16350 PF00486 Transcriptional regulatory protein, C terminal IS_RS16350 PF00072 Response regulator receiver domain IS_RS16355 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IS_RS16365 PF02559 CarD-like/TRCF domain IS_RS16365 PF00270 DEAD/DEAH box helicase IS_RS16365 PF00271 Helicase conserved C-terminal domain IS_RS16365 PF03461 TRCF domain IS_RS16365 PF17757 UvrB interaction domain IS_RS16375 PF01627 Hpt domain IS_RS16375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS16375 PF02895 Signal transducing histidine kinase, homodimeric domain IS_RS16375 PF09078 CheY binding IS_RS16375 PF01584 CheW-like domain IS_RS16380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS16380 PF00672 HAMP domain IS_RS16380 PF02203 Tar ligand binding domain homologue IS_RS16385 PF01584 CheW-like domain IS_RS16390 PF00563 EAL domain IS_RS16390 PF00990 Diguanylate cyclase, GGDEF domain IS_RS16390 PF13426 PAS domain IS_RS16395 PF03705 CheR methyltransferase, all-alpha domain IS_RS16395 PF01739 CheR methyltransferase, SAM binding domain IS_RS16400 PF01339 CheB methylesterase IS_RS16400 PF00072 Response regulator receiver domain IS_RS16405 PF13091 PLD-like domain IS_RS16410 PF01431 Peptidase family M13 IS_RS16410 PF05649 Peptidase family M13 IS_RS16420 PF00300 Histidine phosphatase superfamily (branch 1) IS_RS16425 PF04493 Endonuclease V IS_RS16435 PF05726 Pirin C-terminal cupin domain IS_RS16435 PF02678 Pirin IS_RS16450 PF02678 Pirin IS_RS16450 PF05726 Pirin C-terminal cupin domain IS_RS16455 PF13722 5TM C-terminal transporter carbon starvation CstA IS_RS16455 PF02554 Carbon starvation protein CstA IS_RS16460 PF04328 Selenoprotein, putative IS_RS16505 PF13478 XdhC Rossmann domain IS_RS16505 PF02625 XdhC and CoxI family IS_RS16510 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IS_RS16510 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IS_RS16515 PF00941 FAD binding domain in molybdopterin dehydrogenase IS_RS16515 PF03450 CO dehydrogenase flavoprotein C-terminal domain IS_RS16520 PF01799 [2Fe-2S] binding domain IS_RS16520 PF00111 2Fe-2S iron-sulfur cluster binding domain IS_RS16520 PF10518 TAT (twin-arginine translocation) pathway signal sequence IS_RS16525 PF00550 Phosphopantetheine attachment site IS_RS16525 PF08659 KR domain IS_RS16525 PF00698 Acyl transferase domain IS_RS16525 PF02801 Beta-ketoacyl synthase, C-terminal domain IS_RS16525 PF00107 Zinc-binding dehydrogenase IS_RS16525 PF08240 Alcohol dehydrogenase GroES-like domain IS_RS16525 PF14765 Polyketide synthase dehydratase IS_RS16525 PF16197 Ketoacyl-synthetase C-terminal extension IS_RS16525 PF00109 Beta-ketoacyl synthase, N-terminal domain IS_RS16530 PF00563 EAL domain IS_RS16530 PF01590 GAF domain IS_RS16530 PF00990 Diguanylate cyclase, GGDEF domain IS_RS16530 PF00360 Phytochrome region IS_RS16535 PF00436 Single-strand binding protein family IS_RS16540 PF00348 Polyprenyl synthetase IS_RS16550 PF02875 Mur ligase family, glutamate ligase domain IS_RS16550 PF08245 Mur ligase middle domain IS_RS16565 PF01842 ACT domain IS_RS16565 PF00696 Amino acid kinase family IS_RS16570 PF02567 Phenazine biosynthesis-like protein IS_RS16575 PF02567 Phenazine biosynthesis-like protein IS_RS16585 PF02566 OsmC-like protein IS_RS16590 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IS_RS16590 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IS_RS16595 PF03652 Holliday junction resolvase IS_RS16600 PF02622 Uncharacterized ACR, COG1678 IS_RS16605 PF13302 Acetyltransferase (GNAT) domain IS_RS16605 PF00958 GMP synthase C terminal domain IS_RS16605 PF00117 Glutamine amidotransferase class-I IS_RS16605 PF13673 Acetyltransferase (GNAT) domain IS_RS16605 PF03352 Methyladenine glycosylase IS_RS16620 PF00437 Type II/IV secretion system protein IS_RS16625 PF00437 Type II/IV secretion system protein IS_RS16630 PF01168 Alanine racemase, N-terminal domain IS_RS16635 PF03807 NADP oxidoreductase coenzyme F420-dependent IS_RS16635 PF14748 Pyrroline-5-carboxylate reductase dimerisation IS_RS16645 PF01551 Peptidase family M23 IS_RS16665 PF01965 DJ-1/PfpI family IS_RS16675 PF02082 Transcriptional regulator IS_RS16680 PF01458 Uncharacterized protein family (UPF0051) IS_RS16685 PF00005 ABC transporter IS_RS16690 PF01458 Uncharacterized protein family (UPF0051) IS_RS16695 PF00266 Aminotransferase class-V IS_RS16705 PF00355 Rieske [2Fe-2S] domain IS_RS16710 PF07715 TonB-dependent Receptor Plug Domain IS_RS16710 PF00593 TonB dependent receptor IS_RS16715 PF18331 PKHD-type hydroxylase C-terminal domain IS_RS16715 PF13640 2OG-Fe(II) oxygenase superfamily IS_RS16740 PF02424 ApbE family IS_RS16745 PF00258 Flavodoxin IS_RS16745 PF00667 FAD binding domain IS_RS16745 PF00175 Oxidoreductase NAD-binding domain IS_RS16775 PF01636 Phosphotransferase enzyme family IS_RS16780 PF00483 Nucleotidyl transferase IS_RS16785 PF00308 Bacterial dnaA protein IS_RS16790 PF01594 AI-2E family transporter IS_RS16800 PF02769 AIR synthase related protein, C-terminal domain IS_RS16800 PF00586 AIR synthase related protein, N-terminal domain IS_RS16810 PF00551 Formyl transferase IS_RS16830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IS_RS16835 PF01722 BolA-like protein IS_RS16840 PF01380 SIS domain IS_RS16840 PF00571 CBS domain IS_RS16855 PF03968 OstA-like protein IS_RS16860 PF00005 ABC transporter IS_RS16865 PF04963 Sigma-54 factor, core binding domain IS_RS16865 PF04552 Sigma-54, DNA binding domain IS_RS16865 PF00309 Sigma-54 factor, Activator interacting domain (AID) IS_RS16870 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IS_RS16875 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IS_RS16880 PF07475 HPr Serine kinase C-terminal domain IS_RS16880 PF02603 HPr Serine kinase N terminus IS_RS16885 PF03668 P-loop ATPase protein family IS_RS16895 PF00381 PTS HPr component phosphorylation site IS_RS16900 PF02896 PEP-utilising enzyme, TIM barrel domain IS_RS16900 PF05524 PEP-utilising enzyme, N-terminal IS_RS16900 PF00391 PEP-utilising enzyme, mobile domain IS_RS16905 PF01769 Divalent cation transporter IS_RS16905 PF03448 MgtE intracellular N domain IS_RS16905 PF00571 CBS domain IS_RS16910 PF00756 Putative esterase IS_RS16915 PF02322 Cytochrome bd terminal oxidase subunit II IS_RS16920 PF01654 Cytochrome bd terminal oxidase subunit I IS_RS16930 PF00324 Amino acid permease IS_RS16945 PF00561 alpha/beta hydrolase fold IS_RS16950 PF00196 Bacterial regulatory proteins, luxR family IS_RS16955 PF00324 Amino acid permease IS_RS16985 PF12706 Beta-lactamase superfamily domain IS_RS16990 PF04820 Tryptophan halogenase IS_RS17020 PF00376 MerR family regulatory protein IS_RS17020 PF09278 MerR, DNA binding IS_RS17025 PF07690 Major Facilitator Superfamily IS_RS17030 PF03738 Glutathionylspermidine synthase preATP-grasp IS_RS17055 PF04012 PspA/IM30 family IS_RS17065 PF01243 Pyridoxamine 5'-phosphate oxidase IS_RS17065 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IS_RS17070 PF01202 Shikimate kinase IS_RS17075 PF01761 3-dehydroquinate synthase IS_RS17085 PF01208 Uroporphyrinogen decarboxylase (URO-D) IS_RS17090 PF07690 Major Facilitator Superfamily IS_RS17095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS17095 PF00512 His Kinase A (phospho-acceptor) domain IS_RS17095 PF01627 Hpt domain IS_RS17095 PF00672 HAMP domain IS_RS17095 PF00072 Response regulator receiver domain IS_RS17095 PF17149 Periplasmic sensor domain found in signal transduction proteins IS_RS17100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS17100 PF00072 Response regulator receiver domain IS_RS17100 PF01627 Hpt domain IS_RS17100 PF00512 His Kinase A (phospho-acceptor) domain IS_RS17100 PF17149 Periplasmic sensor domain found in signal transduction proteins IS_RS17100 PF00672 HAMP domain IS_RS17105 PF01627 Hpt domain IS_RS17105 PF00072 Response regulator receiver domain IS_RS17105 PF00672 HAMP domain IS_RS17105 PF00512 His Kinase A (phospho-acceptor) domain IS_RS17105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS17105 PF17149 Periplasmic sensor domain found in signal transduction proteins IS_RS17115 PF01627 Hpt domain IS_RS17115 PF00072 Response regulator receiver domain IS_RS17115 PF00512 His Kinase A (phospho-acceptor) domain IS_RS17115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS17120 PF04264 YceI-like domain IS_RS17140 PF03313 Serine dehydratase alpha chain IS_RS17140 PF03315 Serine dehydratase beta chain IS_RS17145 PF00561 alpha/beta hydrolase fold IS_RS17150 PF00696 Amino acid kinase family IS_RS17150 PF00742 Homoserine dehydrogenase IS_RS17150 PF03447 Homoserine dehydrogenase, NAD binding domain IS_RS17155 PF01053 Cys/Met metabolism PLP-dependent enzyme IS_RS17160 PF00561 alpha/beta hydrolase fold IS_RS17165 PF01551 Peptidase family M23 IS_RS17165 PF01476 LysM domain IS_RS17165 PF08525 Opacity-associated protein A N-terminal motif IS_RS17170 PF00009 Elongation factor Tu GTP binding domain IS_RS17170 PF16658 Class II release factor RF3, C-terminal domain IS_RS17175 PF03006 Haemolysin-III related IS_RS17180 PF05170 AsmA family IS_RS17185 PF00478 IMP dehydrogenase / GMP reductase domain IS_RS17185 PF00571 CBS domain IS_RS17190 PF00535 Glycosyl transferase family 2 IS_RS17195 PF00912 Transglycosylase IS_RS17200 PF01430 Hsp33 protein IS_RS17210 PF00593 TonB dependent receptor IS_RS17210 PF07715 TonB-dependent Receptor Plug Domain IS_RS17215 PF00440 Bacterial regulatory proteins, tetR family IS_RS17220 PF00561 alpha/beta hydrolase fold IS_RS17225 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IS_RS17225 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IS_RS17225 PF09317 Domain of unknown function (DUF1974) IS_RS17250 PF01597 Glycine cleavage H-protein IS_RS17255 PF01571 Aminomethyltransferase folate-binding domain IS_RS17255 PF08669 Glycine cleavage T-protein C-terminal barrel domain IS_RS17265 PF02694 Uncharacterised BCR, YnfA/UPF0060 family IS_RS17270 PF03819 MazG nucleotide pyrophosphohydrolase domain IS_RS17275 PF00459 Inositol monophosphatase family IS_RS17280 PF00293 NUDIX domain IS_RS17285 PF00202 Aminotransferase class-III IS_RS17290 PF04452 RNA methyltransferase IS_RS17295 PF02685 Glucokinase IS_RS17310 PF01476 LysM domain IS_RS17310 PF00704 Glycosyl hydrolases family 18 IS_RS17315 PF07691 PA14 domain IS_RS17315 PF02838 Glycosyl hydrolase family 20, domain 2 IS_RS17315 PF00728 Glycosyl hydrolase family 20, catalytic domain IS_RS17325 PF00933 Glycosyl hydrolase family 3 N terminal domain IS_RS17325 PF01915 Glycosyl hydrolase family 3 C-terminal domain IS_RS17325 PF07691 PA14 domain IS_RS17325 PF14310 Fibronectin type III-like domain IS_RS17335 PF07971 Glycosyl hydrolase family 92 IS_RS17335 PF17678 Glycosyl hydrolase family 92 N-terminal domain IS_RS17340 PF01301 Glycosyl hydrolases family 35 IS_RS17370 PF03932 CutC family IS_RS17375 PF01112 Asparaginase IS_RS17380 PF12034 Domain of unknown function (DUF3520) IS_RS17380 PF00092 von Willebrand factor type A domain IS_RS17380 PF12450 von Willebrand factor IS_RS17385 PF04542 Sigma-70 region 2 IS_RS17385 PF08281 Sigma-70, region 4 IS_RS17400 PF13302 Acetyltransferase (GNAT) domain IS_RS17415 PF01627 Hpt domain IS_RS17415 PF01584 CheW-like domain IS_RS17415 PF02895 Signal transducing histidine kinase, homodimeric domain IS_RS17415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS17415 PF00072 Response regulator receiver domain IS_RS17420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS17420 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IS_RS17425 PF01584 CheW-like domain IS_RS17430 PF00072 Response regulator receiver domain IS_RS17435 PF00072 Response regulator receiver domain IS_RS17440 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IS_RS17440 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IS_RS17450 PF03747 ADP-ribosylglycohydrolase IS_RS17460 PF03747 ADP-ribosylglycohydrolase IS_RS17465 PF00814 Glycoprotease family IS_RS17470 PF04851 Type III restriction enzyme, res subunit IS_RS17470 PF13307 Helicase C-terminal domain IS_RS17480 PF14814 Bifunctional transglycosylase second domain IS_RS17480 PF00905 Penicillin binding protein transpeptidase domain IS_RS17480 PF00912 Transglycosylase IS_RS17485 PF00535 Glycosyl transferase family 2 IS_RS17495 PF02824 TGS domain IS_RS17495 PF13291 ACT domain IS_RS17495 PF04607 Region found in RelA / SpoT proteins IS_RS17500 PF12706 Beta-lactamase superfamily domain IS_RS17505 PF03070 TENA/THI-4/PQQC family IS_RS17510 PF05402 Coenzyme PQQ synthesis protein D (PqqD) IS_RS17515 PF13186 Iron-sulfur cluster-binding domain IS_RS17515 PF04055 Radical SAM superfamily IS_RS17535 PF02685 Glucokinase IS_RS17545 PF00270 DEAD/DEAH box helicase IS_RS17545 PF11898 Domain of unknown function (DUF3418) IS_RS17545 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IS_RS17545 PF00271 Helicase conserved C-terminal domain IS_RS17545 PF04408 Helicase associated domain (HA2) IS_RS17550 PF00210 Ferritin-like domain IS_RS17555 PF00270 DEAD/DEAH box helicase IS_RS17555 PF00570 HRDC domain IS_RS17555 PF16124 RecQ zinc-binding IS_RS17555 PF00271 Helicase conserved C-terminal domain IS_RS17555 PF09382 RQC domain IS_RS17585 PF01479 S4 domain IS_RS17585 PF00849 RNA pseudouridylate synthase IS_RS17595 PF02203 Tar ligand binding domain homologue IS_RS17595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS17595 PF00672 HAMP domain IS_RS17600 PF01810 LysE type translocator IS_RS17605 PF03466 LysR substrate binding domain IS_RS17605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS17615 PF07536 HWE histidine kinase IS_RS17615 PF13426 PAS domain IS_RS17615 PF13581 Histidine kinase-like ATPase domain IS_RS17620 PF06508 Queuosine biosynthesis protein QueC IS_RS17630 PF04055 Radical SAM superfamily IS_RS17640 PF00691 OmpA family IS_RS17645 PF07676 WD40-like Beta Propeller Repeat IS_RS17645 PF04052 TolB amino-terminal domain IS_RS17655 PF02472 Biopolymer transport protein ExbD/TolR IS_RS17660 PF01618 MotA/TolQ/ExbB proton channel family IS_RS17665 PF03061 Thioesterase superfamily IS_RS17670 PF05491 RuvB C-terminal winged helix domain IS_RS17670 PF05496 Holliday junction DNA helicase RuvB P-loop domain IS_RS17670 PF17864 RuvB AAA lid domain IS_RS17680 PF02705 K+ potassium transporter IS_RS17685 PF07499 RuvA, C-terminal domain IS_RS17685 PF01330 RuvA N terminal domain IS_RS17690 PF02075 Crossover junction endodeoxyribonuclease RuvC IS_RS17695 PF01709 Transcriptional regulator IS_RS17710 PF01336 OB-fold nucleic acid binding domain IS_RS17710 PF00152 tRNA synthetases class II (D, K and N) IS_RS17710 PF02938 GAD domain IS_RS17725 PF07690 Major Facilitator Superfamily IS_RS17735 PF05506 Domain of unknown function (DUF756) IS_RS17735 PF04185 Phosphoesterase family IS_RS17740 PF07859 alpha/beta hydrolase fold IS_RS17740 PF13472 GDSL-like Lipase/Acylhydrolase family IS_RS17750 PF03466 LysR substrate binding domain IS_RS17750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS17760 PF00005 ABC transporter IS_RS17760 PF12848 ABC transporter IS_RS17765 PF07715 TonB-dependent Receptor Plug Domain IS_RS17765 PF00593 TonB dependent receptor IS_RS17775 PF07715 TonB-dependent Receptor Plug Domain IS_RS17775 PF00593 TonB dependent receptor IS_RS17780 PF07715 TonB-dependent Receptor Plug Domain IS_RS17780 PF00593 TonB dependent receptor IS_RS17785 PF00067 Cytochrome P450 IS_RS17800 PF00593 TonB dependent receptor IS_RS17800 PF07660 Secretin and TonB N terminus short domain IS_RS17800 PF07715 TonB-dependent Receptor Plug Domain IS_RS17810 PF06276 Ferric iron reductase FhuF-like transporter IS_RS17810 PF04183 IucA / IucC family IS_RS17815 PF07690 Major Facilitator Superfamily IS_RS17820 PF06276 Ferric iron reductase FhuF-like transporter IS_RS17820 PF04183 IucA / IucC family IS_RS17825 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IS_RS17825 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IS_RS17835 PF02654 Cobalamin-5-phosphate synthase IS_RS17845 PF02277 Phosphoribosyltransferase IS_RS17850 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IS_RS17855 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IS_RS17855 PF07685 CobB/CobQ-like glutamine amidotransferase domain IS_RS17860 PF00155 Aminotransferase class I and II IS_RS17865 PF17113 Regulatory signalling modulator protein AmpE IS_RS17865 PF03186 CobD/Cbib protein IS_RS17870 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IS_RS17870 PF12557 Cob(I)alamin adenosyltransferase N terminal IS_RS17885 PF00593 TonB dependent receptor IS_RS17885 PF07715 TonB-dependent Receptor Plug Domain IS_RS17890 PF10431 C-terminal, D2-small domain, of ClpB protein IS_RS17890 PF02861 Clp amino terminal domain, pathogenicity island component IS_RS17890 PF00004 ATPase family associated with various cellular activities (AAA) IS_RS17890 PF07724 AAA domain (Cdc48 subfamily) IS_RS17890 PF17871 AAA lid domain IS_RS17895 PF01541 GIY-YIG catalytic domain IS_RS17930 PF07715 TonB-dependent Receptor Plug Domain IS_RS17930 PF00593 TonB dependent receptor IS_RS17935 PF02358 Trehalose-phosphatase IS_RS17940 PF00723 Glycosyl hydrolases family 15 IS_RS17945 PF00982 Glycosyltransferase family 20 IS_RS17950 PF01011 PQQ enzyme repeat IS_RS17955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS17955 PF00672 HAMP domain IS_RS17955 PF02203 Tar ligand binding domain homologue IS_RS17960 PF04134 Protein of unknown function, DUF393 IS_RS17970 PF02578 Multi-copper polyphenol oxidoreductase laccase IS_RS17975 PF00849 RNA pseudouridylate synthase IS_RS17980 PF13525 Outer membrane lipoprotein IS_RS17990 PF00795 Carbon-nitrogen hydrolase IS_RS17990 PF02540 NAD synthase IS_RS18005 PF02629 CoA binding domain IS_RS18005 PF00549 CoA-ligase IS_RS18010 PF08442 ATP-grasp domain IS_RS18010 PF00549 CoA-ligase IS_RS18015 PF00512 His Kinase A (phospho-acceptor) domain IS_RS18015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS18025 PF00072 Response regulator receiver domain IS_RS18025 PF02954 Bacterial regulatory protein, Fis family IS_RS18025 PF00158 Sigma-54 interaction domain IS_RS18030 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IS_RS18030 PF00437 Type II/IV secretion system protein IS_RS18035 PF00114 Pilin (bacterial filament) IS_RS18035 PF07963 Prokaryotic N-terminal methylation motif IS_RS18040 PF00482 Type II secretion system (T2SS), protein F IS_RS18045 PF01478 Type IV leader peptidase family IS_RS18045 PF06750 Bacterial Peptidase A24 N-terminal domain IS_RS18050 PF01121 Dephospho-CoA kinase IS_RS18065 PF01527 Transposase IS_RS18070 PF13683 Integrase core domain IS_RS18070 PF13276 HTH-like domain IS_RS18075 PF01527 Transposase IS_RS18080 PF13276 HTH-like domain IS_RS18080 PF13683 Integrase core domain IS_RS18085 PF00512 His Kinase A (phospho-acceptor) domain IS_RS18085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS18085 PF11808 Phosphate regulon sensor protein PhoR IS_RS18085 PF00989 PAS fold IS_RS18090 PF00486 Transcriptional regulatory protein, C terminal IS_RS18090 PF00072 Response regulator receiver domain IS_RS18100 PF08443 RimK-like ATP-grasp domain IS_RS18100 PF18030 RimK PreATP-grasp domain IS_RS18105 PF00128 Alpha amylase, catalytic domain IS_RS18105 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IS_RS18160 PF13333 Integrase core domain IS_RS18160 PF00665 Integrase core domain IS_RS18160 PF13276 HTH-like domain IS_RS18170 PF01527 Transposase IS_RS18175 PF13276 HTH-like domain IS_RS18175 PF13683 Integrase core domain IS_RS18190 PF04610 TrbL/VirB6 plasmid conjugal transfer protein IS_RS18205 PF01609 Transposase DDE domain IS_RS18205 PF05598 Transposase domain (DUF772) IS_RS18220 PF13276 HTH-like domain IS_RS18220 PF00665 Integrase core domain IS_RS18220 PF13333 Integrase core domain IS_RS18235 PF05114 Protein of unknown function (DUF692) IS_RS18250 PF04002 RadC-like JAB domain IS_RS18270 PF00665 Integrase core domain IS_RS18270 PF13333 Integrase core domain IS_RS18270 PF13276 HTH-like domain IS_RS18280 PF01527 Transposase IS_RS18310 PF05690 Thiazole biosynthesis protein ThiG IS_RS18315 PF02390 Putative methyltransferase IS_RS18320 PF03600 Citrate transporter IS_RS18320 PF02080 TrkA-C domain IS_RS18335 PF01557 Fumarylacetoacetate (FAA) hydrolase family IS_RS18340 PF01741 Large-conductance mechanosensitive channel, MscL IS_RS18355 PF00356 Bacterial regulatory proteins, lacI family IS_RS18365 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain IS_RS18365 PF00703 Glycosyl hydrolases family 2 IS_RS18365 PF02837 Glycosyl hydrolases family 2, sugar binding domain IS_RS18370 PF10566 Glycoside hydrolase 97 IS_RS18370 PF14508 Glycosyl-hydrolase 97 N-terminal IS_RS18370 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation IS_RS18380 PF00135 Carboxylesterase family IS_RS18385 PF08032 RNA 2'-O ribose methyltransferase substrate binding IS_RS18385 PF00588 SpoU rRNA Methylase family IS_RS18400 PF11838 ERAP1-like C-terminal domain IS_RS18400 PF01433 Peptidase family M1 domain IS_RS18430 PF00873 AcrB/AcrD/AcrF family IS_RS18435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IS_RS18435 PF00529 HlyD membrane-fusion protein of T1SS IS_RS18440 PF00009 Elongation factor Tu GTP binding domain IS_RS18445 PF01507 Phosphoadenosine phosphosulfate reductase family IS_RS18450 PF00175 Oxidoreductase NAD-binding domain IS_RS18450 PF00258 Flavodoxin IS_RS18450 PF00667 FAD binding domain IS_RS18455 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IS_RS18455 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IS_RS18460 PF01507 Phosphoadenosine phosphosulfate reductase family IS_RS18480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS18480 PF01627 Hpt domain IS_RS18480 PF00072 Response regulator receiver domain IS_RS18480 PF00512 His Kinase A (phospho-acceptor) domain IS_RS18495 PF03466 LysR substrate binding domain IS_RS18495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS18500 PF10414 Sirohaem synthase dimerisation region IS_RS18500 PF14824 Sirohaem biosynthesis protein central IS_RS18500 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IS_RS18505 PF00291 Pyridoxal-phosphate dependent enzyme IS_RS18515 PF01661 Macro domain IS_RS18520 PF00274 Fructose-bisphosphate aldolase class-I IS_RS18525 PF02887 Pyruvate kinase, alpha/beta domain IS_RS18525 PF00224 Pyruvate kinase, barrel domain IS_RS18530 PF13419 Haloacid dehalogenase-like hydrolase IS_RS18535 PF00162 Phosphoglycerate kinase IS_RS18555 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IS_RS18555 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IS_RS18565 PF03922 OmpW family IS_RS18570 PF03922 OmpW family IS_RS18580 PF04273 Putative phosphatase (DUF442) IS_RS18580 PF00753 Metallo-beta-lactamase superfamily IS_RS18590 PF00528 Binding-protein-dependent transport system inner membrane component IS_RS18595 PF03459 TOBE domain IS_RS18595 PF00005 ABC transporter IS_RS18630 PF03734 L,D-transpeptidase catalytic domain IS_RS18630 PF01476 LysM domain IS_RS18635 PF01551 Peptidase family M23 IS_RS18635 PF04225 Opacity-associated protein A LysM-like domain IS_RS18640 PF00593 TonB dependent receptor IS_RS18640 PF07715 TonB-dependent Receptor Plug Domain IS_RS18645 PF00456 Transketolase, thiamine diphosphate binding domain IS_RS18645 PF02779 Transketolase, pyrimidine binding domain IS_RS18645 PF02780 Transketolase, C-terminal domain IS_RS18650 PF00375 Sodium:dicarboxylate symporter family IS_RS18660 PF07584 Aerotolerance regulator N-terminal IS_RS18660 PF00092 von Willebrand factor type A domain IS_RS18680 PF07726 ATPase family associated with various cellular activities (AAA) IS_RS18680 PF17863 AAA lid domain IS_RS18685 PF11741 AMIN domain IS_RS18685 PF00263 Bacterial type II and III secretion system protein IS_RS18685 PF03958 Bacterial type II/III secretion system short domain IS_RS18685 PF07660 Secretin and TonB N terminus short domain IS_RS18690 PF04351 Pilus assembly protein, PilP IS_RS18695 PF04350 Pilus assembly protein, PilO IS_RS18700 PF05137 Fimbrial assembly protein (PilN) IS_RS18705 PF11104 Type IV pilus assembly protein PilM; IS_RS18710 PF17092 Penicillin-binding protein OB-like domain IS_RS18710 PF00912 Transglycosylase IS_RS18710 PF00905 Penicillin binding protein transpeptidase domain IS_RS18720 PF00285 Citrate synthase, C-terminal domain IS_RS18725 PF01197 Ribosomal protein L31 IS_RS18730 PF01156 Inosine-uridine preferring nucleoside hydrolase IS_RS18735 PF00271 Helicase conserved C-terminal domain IS_RS18735 PF17191 RecG wedge domain IS_RS18735 PF00270 DEAD/DEAH box helicase IS_RS18740 PF01042 Endoribonuclease L-PSP IS_RS18745 PF02824 TGS domain IS_RS18745 PF04607 Region found in RelA / SpoT proteins IS_RS18745 PF13291 ACT domain IS_RS18750 PF01192 RNA polymerase Rpb6 IS_RS18755 PF00625 Guanylate kinase IS_RS18760 PF03755 YicC-like family, N-terminal region IS_RS18760 PF08340 Domain of unknown function (DUF1732) IS_RS18765 PF03725 3' exoribonuclease family, domain 2 IS_RS18765 PF01138 3' exoribonuclease family, domain 1 IS_RS18775 PF01725 Ham1 family IS_RS18780 PF06969 HemN C-terminal domain IS_RS18780 PF04055 Radical SAM superfamily IS_RS18795 PF00557 Metallopeptidase family M24 IS_RS18805 PF00557 Metallopeptidase family M24 IS_RS18805 PF05195 Aminopeptidase P, N-terminal domain IS_RS18810 PF03695 Uncharacterised protein family (UPF0149) IS_RS18820 PF05164 Cell division protein ZapA IS_RS18825 PF01812 5-formyltetrahydrofolate cyclo-ligase family IS_RS18835 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IS_RS18845 PF13369 Transglutaminase-like superfamily IS_RS18850 PF00301 Rubredoxin IS_RS18855 PF02581 Thiamine monophosphate synthase IS_RS18865 PF00202 Aminotransferase class-III IS_RS18870 PF17874 MalT-like TPR region IS_RS18870 PF00196 Bacterial regulatory proteins, luxR family IS_RS18875 PF00127 Copper binding proteins, plastocyanin/azurin family IS_RS18880 PF00155 Aminotransferase class I and II IS_RS18890 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IS_RS18890 PF00034 Cytochrome c IS_RS18895 PF01593 Flavin containing amine oxidoreductase IS_RS18910 PF00202 Aminotransferase class-III IS_RS18915 PF00520 Ion transport protein IS_RS18915 PF00027 Cyclic nucleotide-binding domain IS_RS18930 PF01569 PAP2 superfamily IS_RS18935 PF01062 Bestrophin, RFP-TM, chloride channel IS_RS18945 PF02875 Mur ligase family, glutamate ligase domain IS_RS18945 PF01225 Mur ligase family, catalytic domain IS_RS18945 PF08245 Mur ligase middle domain IS_RS18955 PF00365 Phosphofructokinase IS_RS18965 PF04610 TrbL/VirB6 plasmid conjugal transfer protein IS_RS18980 PF04610 TrbL/VirB6 plasmid conjugal transfer protein IS_RS18995 PF04610 TrbL/VirB6 plasmid conjugal transfer protein IS_RS19015 PF03030 Inorganic H+ pyrophosphatase IS_RS19025 PF00719 Inorganic pyrophosphatase IS_RS19035 PF07715 TonB-dependent Receptor Plug Domain IS_RS19035 PF00593 TonB dependent receptor IS_RS19040 PF12833 Helix-turn-helix domain IS_RS19045 PF18500 CadC C-terminal domain 1 IS_RS19045 PF00486 Transcriptional regulatory protein, C terminal IS_RS19050 PF01964 Radical SAM ThiC family IS_RS19050 PF13667 ThiC-associated domain IS_RS19055 PF07715 TonB-dependent Receptor Plug Domain IS_RS19055 PF00593 TonB dependent receptor IS_RS19060 PF02203 Tar ligand binding domain homologue IS_RS19060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IS_RS19060 PF00672 HAMP domain IS_RS19070 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IS_RS19070 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IS_RS19075 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IS_RS19075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IS_RS19075 PF00205 Thiamine pyrophosphate enzyme, central domain IS_RS19085 PF00291 Pyridoxal-phosphate dependent enzyme IS_RS19090 PF00682 HMGL-like IS_RS19090 PF08502 LeuA allosteric (dimerisation) domain IS_RS19095 PF00180 Isocitrate/isopropylmalate dehydrogenase IS_RS19100 PF00694 Aconitase C-terminal domain IS_RS19105 PF00330 Aconitase family (aconitate hydratase) IS_RS19110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS19115 PF00990 Diguanylate cyclase, GGDEF domain IS_RS19130 PF02321 Outer membrane efflux protein IS_RS19135 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IS_RS19140 PF03279 Bacterial lipid A biosynthesis acyltransferase IS_RS19165 PF00390 Malic enzyme, N-terminal domain IS_RS19165 PF03949 Malic enzyme, NAD binding domain IS_RS19165 PF01515 Phosphate acetyl/butaryl transferase IS_RS19170 PF00375 Sodium:dicarboxylate symporter family IS_RS19180 PF00512 His Kinase A (phospho-acceptor) domain IS_RS19180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS19180 PF02743 Cache domain IS_RS19190 PF07690 Major Facilitator Superfamily IS_RS19200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS19200 PF03466 LysR substrate binding domain IS_RS19210 PF00248 Aldo/keto reductase family IS_RS19225 PF00072 Response regulator receiver domain IS_RS19225 PF00196 Bacterial regulatory proteins, luxR family IS_RS19235 PF08521 Two-component sensor kinase N-terminal IS_RS19235 PF00512 His Kinase A (phospho-acceptor) domain IS_RS19235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS19240 PF00486 Transcriptional regulatory protein, C terminal IS_RS19240 PF00072 Response regulator receiver domain IS_RS19250 PF03600 Citrate transporter IS_RS19255 PF00106 short chain dehydrogenase IS_RS19260 PF00356 Bacterial regulatory proteins, lacI family IS_RS19275 PF00128 Alpha amylase, catalytic domain IS_RS19290 PF03193 RsgA GTPase IS_RS19295 PF00155 Aminotransferase class I and II IS_RS19310 PF01522 Polysaccharide deacetylase IS_RS19315 PF00462 Glutaredoxin IS_RS19330 PF01979 Amidohydrolase family IS_RS19335 PF01979 Amidohydrolase family IS_RS19355 PF02645 Uncharacterised protein, DegV family COG1307 IS_RS19360 PF01327 Polypeptide deformylase IS_RS19365 PF03960 ArsC family IS_RS19380 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) IS_RS19385 PF01270 Glycosyl hydrolases family 8 IS_RS19390 PF03170 Bacterial cellulose synthase subunit IS_RS19410 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IS_RS19410 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IS_RS19445 PF07715 TonB-dependent Receptor Plug Domain IS_RS19445 PF00593 TonB dependent receptor IS_RS19455 PF00392 Bacterial regulatory proteins, gntR family IS_RS19455 PF07702 UTRA domain IS_RS19465 PF00263 Bacterial type II and III secretion system protein IS_RS19465 PF03958 Bacterial type II/III secretion system short domain IS_RS19475 PF10741 Type II secretion system (T2SS), protein M subtype b IS_RS19480 PF05137 Fimbrial assembly protein (PilN) IS_RS19485 PF03934 Type II secretion system (T2SS), protein K IS_RS19495 PF07963 Prokaryotic N-terminal methylation motif IS_RS19500 PF12019 Type II transport protein GspH IS_RS19505 PF08334 Type II secretion system (T2SS), protein G IS_RS19510 PF00482 Type II secretion system (T2SS), protein F IS_RS19515 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IS_RS19515 PF00437 Type II/IV secretion system protein IS_RS19520 PF04151 Bacterial pre-peptidase C-terminal domain IS_RS19520 PF00082 Subtilase family IS_RS19525 PF05658 Head domain of trimeric autotransporter adhesin IS_RS19525 PF05662 Coiled stalk of trimeric autotransporter adhesin IS_RS19525 PF03895 YadA-like membrane anchor domain IS_RS19525 PF13018 Extended Signal Peptide of Type V secretion system IS_RS19530 PF00082 Subtilase family IS_RS19530 PF04151 Bacterial pre-peptidase C-terminal domain IS_RS19535 PF13018 Extended Signal Peptide of Type V secretion system IS_RS19535 PF05662 Coiled stalk of trimeric autotransporter adhesin IS_RS19535 PF05658 Head domain of trimeric autotransporter adhesin IS_RS19535 PF03895 YadA-like membrane anchor domain IS_RS19540 PF02769 AIR synthase related protein, C-terminal domain IS_RS19540 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IS_RS19540 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IS_RS19545 PF13098 Thioredoxin-like domain IS_RS19545 PF10411 Disulfide bond isomerase protein N-terminus IS_RS19550 PF02899 Phage integrase, N-terminal SAM-like domain IS_RS19550 PF00589 Phage integrase family IS_RS19565 PF03739 Lipopolysaccharide export system permease LptF/LptG IS_RS19575 PF00883 Cytosol aminopeptidase family, catalytic domain IS_RS19575 PF02789 Cytosol aminopeptidase family, N-terminal domain IS_RS19590 PF00133 tRNA synthetases class I (I, L, M and V) IS_RS19590 PF10458 Valyl tRNA synthetase tRNA binding arm IS_RS19590 PF08264 Anticodon-binding domain of tRNA IS_RS19595 PF00593 TonB dependent receptor IS_RS19595 PF07715 TonB-dependent Receptor Plug Domain IS_RS19600 PF01464 Transglycosylase SLT domain IS_RS19600 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain IS_RS19605 PF00544 Pectate lyase IS_RS19625 PF01066 CDP-alcohol phosphatidyltransferase IS_RS19635 PF03129 Anticodon binding domain IS_RS19635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IS_RS19635 PF04073 Aminoacyl-tRNA editing domain IS_RS19640 PF00816 H-NS histone family IS_RS19650 PF02405 Permease MlaE IS_RS19655 PF00005 ABC transporter IS_RS19660 PF03886 ABC-type transport auxiliary lipoprotein component IS_RS19660 PF02470 MlaD protein IS_RS19680 PF01144 Coenzyme A transferase IS_RS19685 PF01144 Coenzyme A transferase IS_RS19690 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IS_RS19690 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IS_RS19690 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IS_RS19690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IS_RS19695 PF00483 Nucleotidyl transferase IS_RS19695 PF01050 Mannose-6-phosphate isomerase IS_RS19700 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IS_RS19700 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IS_RS19700 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IS_RS19705 PF04321 RmlD substrate binding domain IS_RS19710 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase IS_RS19715 PF00483 Nucleotidyl transferase IS_RS19720 PF16363 GDP-mannose 4,6 dehydratase IS_RS19725 PF01012 Electron transfer flavoprotein domain IS_RS19730 PF00766 Electron transfer flavoprotein FAD-binding domain IS_RS19730 PF01012 Electron transfer flavoprotein domain IS_RS19735 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IS_RS19740 PF00535 Glycosyl transferase family 2 IS_RS19760 PF16363 GDP-mannose 4,6 dehydratase IS_RS19765 PF16363 GDP-mannose 4,6 dehydratase IS_RS19770 PF00534 Glycosyl transferases group 1 IS_RS19770 PF13477 Glycosyl transferase 4-like IS_RS19775 PF00069 Protein kinase domain IS_RS19775 PF13847 Methyltransferase domain IS_RS19780 PF00005 ABC transporter IS_RS19790 PF13439 Glycosyltransferase Family 4 IS_RS19790 PF00534 Glycosyl transferases group 1 IS_RS19795 PF01053 Cys/Met metabolism PLP-dependent enzyme IS_RS19800 PF00571 CBS domain IS_RS19800 PF00291 Pyridoxal-phosphate dependent enzyme IS_RS19820 PF00437 Type II/IV secretion system protein IS_RS19825 PF14497 Glutathione S-transferase, C-terminal domain IS_RS19825 PF02798 Glutathione S-transferase, N-terminal domain IS_RS19835 PF00271 Helicase conserved C-terminal domain IS_RS19835 PF00270 DEAD/DEAH box helicase IS_RS19840 PF01242 6-pyruvoyl tetrahydropterin synthase IS_RS19855 PF13185 GAF domain IS_RS19865 PF13419 Haloacid dehalogenase-like hydrolase IS_RS19870 PF11799 impB/mucB/samB family C-terminal domain IS_RS19870 PF00817 impB/mucB/samB family IS_RS19875 PF07977 FabA-like domain IS_RS19880 PF00109 Beta-ketoacyl synthase, N-terminal domain IS_RS19880 PF02801 Beta-ketoacyl synthase, C-terminal domain IS_RS19890 PF01432 Peptidase family M3 IS_RS19905 PF07732 Multicopper oxidase IS_RS19905 PF07731 Multicopper oxidase IS_RS19905 PF00394 Multicopper oxidase IS_RS19910 PF05275 Copper resistance protein B precursor (CopB) IS_RS19915 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IS_RS19940 PF01380 SIS domain IS_RS19945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IS_RS19950 PF00005 ABC transporter IS_RS19955 PF12704 MacB-like periplasmic core domain IS_RS19955 PF02687 FtsX-like permease family IS_RS19960 PF12704 MacB-like periplasmic core domain IS_RS19960 PF02687 FtsX-like permease family IS_RS19960 PF00005 ABC transporter IS_RS19970 PF00158 Sigma-54 interaction domain IS_RS19970 PF00072 Response regulator receiver domain IS_RS19970 PF02954 Bacterial regulatory protein, Fis family IS_RS19975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS19975 PF00512 His Kinase A (phospho-acceptor) domain IS_RS19980 PF00132 Bacterial transferase hexapeptide (six repeats) IS_RS19980 PF12804 MobA-like NTP transferase domain IS_RS19980 PF14602 Hexapeptide repeat of succinyl-transferase IS_RS19990 PF01817 Chorismate mutase type II IS_RS19995 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain IS_RS19995 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IS_RS20000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IS_RS20000 PF02874 ATP synthase alpha/beta family, beta-barrel domain IS_RS20005 PF00231 ATP synthase IS_RS20010 PF02874 ATP synthase alpha/beta family, beta-barrel domain IS_RS20010 PF00306 ATP synthase alpha/beta chain, C terminal domain IS_RS20010 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IS_RS20015 PF00213 ATP synthase delta (OSCP) subunit IS_RS20020 PF00430 ATP synthase B/B' CF(0) IS_RS20025 PF00137 ATP synthase subunit C IS_RS20030 PF00119 ATP synthase A chain IS_RS20050 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS20050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IS_RS20060 PF02817 e3 binding domain IS_RS20060 PF00364 Biotin-requiring enzyme IS_RS20060 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IS_RS20100 PF03180 NLPA lipoprotein IS_RS20105 PF00528 Binding-protein-dependent transport system inner membrane component IS_RS20110 PF00005 ABC transporter IS_RS20110 PF09383 NIL domain IS_RS20115 PF00892 EamA-like transporter family IS_RS20120 PF04461 Protein of unknown function (DUF520) IS_RS20130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS20130 PF00512 His Kinase A (phospho-acceptor) domain IS_RS20130 PF18415 Histidine kinase receptor ArcB trans-membrane domain IS_RS20130 PF01627 Hpt domain IS_RS20130 PF00989 PAS fold IS_RS20130 PF00072 Response regulator receiver domain IS_RS20155 PF13419 Haloacid dehalogenase-like hydrolase IS_RS20160 PF01479 S4 domain IS_RS20160 PF00849 RNA pseudouridylate synthase IS_RS20165 PF08468 Methyltransferase small domain N-terminal IS_RS20165 PF05175 Methyltransferase small domain IS_RS20175 PF07995 Glucose / Sorbosone dehydrogenase IS_RS20185 PF00989 PAS fold IS_RS20185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS20185 PF00512 His Kinase A (phospho-acceptor) domain IS_RS20205 PF01168 Alanine racemase, N-terminal domain IS_RS20205 PF00842 Alanine racemase, C-terminal domain IS_RS20210 PF01266 FAD dependent oxidoreductase IS_RS20215 PF01037 Lrp/AsnC ligand binding domain IS_RS20225 PF01641 SelR domain IS_RS20235 PF01618 MotA/TolQ/ExbB proton channel family IS_RS20240 PF00691 OmpA family IS_RS20240 PF13677 Membrane MotB of proton-channel complex MotA/MotB IS_RS20265 PF01061 ABC-2 type transporter IS_RS20270 PF00005 ABC transporter IS_RS20275 PF00999 Sodium/hydrogen exchanger family IS_RS20280 PF02469 Fasciclin domain IS_RS20285 PF03167 Uracil DNA glycosylase superfamily IS_RS20295 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IS_RS20300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS20300 PF03466 LysR substrate binding domain IS_RS20305 PF03358 NADPH-dependent FMN reductase IS_RS20320 PF05649 Peptidase family M13 IS_RS20320 PF01431 Peptidase family M13 IS_RS20335 PF13520 Amino acid permease IS_RS20345 PF00072 Response regulator receiver domain IS_RS20345 PF04397 LytTr DNA-binding domain IS_RS20350 PF02743 Cache domain IS_RS20350 PF00672 HAMP domain IS_RS20350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS20350 PF06580 Histidine kinase IS_RS20365 PF05974 Domain of unknown function (DUF892) IS_RS20370 PF05067 Manganese containing catalase IS_RS20390 PF01739 CheR methyltransferase, SAM binding domain IS_RS20390 PF01339 CheB methylesterase IS_RS20390 PF03705 CheR methyltransferase, all-alpha domain IS_RS20390 PF08448 PAS fold IS_RS20405 PF00072 Response regulator receiver domain IS_RS20405 PF02954 Bacterial regulatory protein, Fis family IS_RS20405 PF00158 Sigma-54 interaction domain IS_RS20415 PF01654 Cytochrome bd terminal oxidase subunit I IS_RS20420 PF02322 Cytochrome bd terminal oxidase subunit II IS_RS20440 PF16363 GDP-mannose 4,6 dehydratase IS_RS20450 PF03275 UDP-galactopyranose mutase IS_RS20460 PF00664 ABC transporter transmembrane region IS_RS20460 PF00005 ABC transporter IS_RS20475 PF00107 Zinc-binding dehydrogenase IS_RS20475 PF13823 Alcohol dehydrogenase GroES-associated IS_RS20475 PF08240 Alcohol dehydrogenase GroES-like domain IS_RS20520 PF07715 TonB-dependent Receptor Plug Domain IS_RS20520 PF00593 TonB dependent receptor IS_RS20535 PF00005 ABC transporter IS_RS20545 PF03466 LysR substrate binding domain IS_RS20545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS20550 PF01042 Endoribonuclease L-PSP IS_RS20565 PF03466 LysR substrate binding domain IS_RS20565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS20570 PF02525 Flavodoxin-like fold IS_RS20600 PF01740 STAS domain IS_RS20600 PF00916 Sulfate permease family IS_RS20605 PF00654 Voltage gated chloride channel IS_RS20615 PF00557 Metallopeptidase family M24 IS_RS20625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS20625 PF03466 LysR substrate binding domain IS_RS20650 PF00717 Peptidase S24-like IS_RS20690 PF04546 Sigma-70, non-essential region IS_RS20690 PF03979 Sigma-70 factor, region 1.1 IS_RS20690 PF04542 Sigma-70 region 2 IS_RS20690 PF00140 Sigma-70 factor, region 1.2 IS_RS20690 PF04539 Sigma-70 region 3 IS_RS20690 PF04545 Sigma-70, region 4 IS_RS20695 PF02580 D-Tyr-tRNA(Tyr) deacylase IS_RS20700 PF03279 Bacterial lipid A biosynthesis acyltransferase IS_RS20715 PF00925 GTP cyclohydrolase II IS_RS20730 PF05598 Transposase domain (DUF772) IS_RS20740 PF00535 Glycosyl transferase family 2 IS_RS20755 PF01029 NusB family IS_RS20755 PF01189 16S rRNA methyltransferase RsmB/F IS_RS20760 PF02911 Formyl transferase, C-terminal domain IS_RS20760 PF00551 Formyl transferase IS_RS20765 PF01327 Polypeptide deformylase IS_RS20770 PF01476 LysM domain IS_RS20775 PF02481 DNA recombination-mediator protein A IS_RS20775 PF17782 DprA winged helix domain IS_RS20780 PF04361 Protein of unknown function (DUF494) IS_RS20785 PF00114 Pilin (bacterial filament) IS_RS20785 PF07963 Prokaryotic N-terminal methylation motif IS_RS20795 PF13368 Topoisomerase C-terminal repeat IS_RS20795 PF01751 Toprim domain IS_RS20795 PF01131 DNA topoisomerase IS_RS20800 PF01300 Telomere recombination IS_RS20825 PF01343 Peptidase family S49 IS_RS20830 PF01554 MatE IS_RS20850 PF00270 DEAD/DEAH box helicase IS_RS20850 PF17764 3′ DNA-binding domain (3′BD) IS_RS20850 PF18074 Primosomal protein N C-terminal domain IS_RS20850 PF00271 Helicase conserved C-terminal domain IS_RS20850 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IS_RS20870 PF07992 Pyridine nucleotide-disulphide oxidoreductase IS_RS20875 PF03458 UPF0126 domain IS_RS20880 PF04542 Sigma-70 region 2 IS_RS20880 PF04545 Sigma-70, region 4 IS_RS20885 PF03167 Uracil DNA glycosylase superfamily IS_RS20890 PF01339 CheB methylesterase IS_RS20890 PF00072 Response regulator receiver domain IS_RS20895 PF18075 FtsX extracellular domain IS_RS20900 PF00005 ABC transporter IS_RS20905 PF12300 ATP-dependent RNA helicase RhlB IS_RS20905 PF00271 Helicase conserved C-terminal domain IS_RS20905 PF00270 DEAD/DEAH box helicase IS_RS20910 PF00085 Thioredoxin IS_RS20915 PF07498 Rho termination factor, N-terminal domain IS_RS20915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IS_RS20915 PF07497 Rho termination factor, RNA-binding domain IS_RS20925 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) IS_RS20930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS20930 PF03466 LysR substrate binding domain IS_RS20940 PF03971 Monomeric isocitrate dehydrogenase IS_RS20950 PF04972 BON domain IS_RS20950 PF01476 LysM domain IS_RS20955 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IS_RS20955 PF14489 QueF-like protein IS_RS20960 PF01546 Peptidase family M20/M25/M40 IS_RS20960 PF07687 Peptidase dimerisation domain IS_RS20965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IS_RS20970 PF00873 AcrB/AcrD/AcrF family IS_RS20975 PF00873 AcrB/AcrD/AcrF family IS_RS20980 PF07063 Domain of unknown function (DUF1338) IS_RS21020 PF01427 D-ala-D-ala dipeptidase IS_RS21025 PF01510 N-acetylmuramoyl-L-alanine amidase IS_RS21035 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IS_RS21035 PF13378 Enolase C-terminal domain-like IS_RS21045 PF13520 Amino acid permease IS_RS21060 PF05360 yiaA/B two helix domain IS_RS21065 PF07995 Glucose / Sorbosone dehydrogenase IS_RS21070 PF14310 Fibronectin type III-like domain IS_RS21070 PF01915 Glycosyl hydrolase family 3 C-terminal domain IS_RS21070 PF00933 Glycosyl hydrolase family 3 N terminal domain IS_RS21075 PF02152 Dihydroneopterin aldolase IS_RS21080 PF00814 Glycoprotease family IS_RS21085 PF01165 Ribosomal protein S21 IS_RS21090 PF09424 Yqey-like protein IS_RS21095 PF03631 Virulence factor BrkB IS_RS21100 PF10410 DnaB-helicase binding domain of primase IS_RS21100 PF01807 CHC2 zinc finger IS_RS21100 PF08275 DNA primase catalytic core, N-terminal domain IS_RS21100 PF08278 DNA primase DnaG DnaB-binding IS_RS21105 PF13593 SBF-like CPA transporter family (DUF4137) IS_RS21115 PF01040 UbiA prenyltransferase family IS_RS21140 PF00510 Cytochrome c oxidase subunit III IS_RS21145 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 IS_RS21155 PF00115 Cytochrome C and Quinol oxidase polypeptide I IS_RS21160 PF02790 Cytochrome C oxidase subunit II, transmembrane domain IS_RS21160 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IS_RS21170 PF00171 Aldehyde dehydrogenase family IS_RS21170 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IS_RS21170 PF14850 DNA-binding domain of Proline dehydrogenase IS_RS21170 PF01619 Proline dehydrogenase IS_RS21200 PF00579 tRNA synthetases class I (W and Y) IS_RS21205 PF01551 Peptidase family M23 IS_RS21205 PF04225 Opacity-associated protein A LysM-like domain IS_RS21210 PF03702 Anhydro-N-acetylmuramic acid kinase IS_RS21220 PF07690 Major Facilitator Superfamily IS_RS21225 PF03372 Endonuclease/Exonuclease/phosphatase family IS_RS21230 PF00156 Phosphoribosyl transferase domain IS_RS21240 PF13614 AAA domain IS_RS21245 PF02195 ParB-like nuclease domain IS_RS21245 PF17762 HTH domain found in ParB protein IS_RS21255 PF01370 NAD dependent epimerase/dehydratase family IS_RS21260 PF00535 Glycosyl transferase family 2 IS_RS21275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IS_RS21275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IS_RS21275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IS_RS21275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IS_RS21280 PF00692 dUTPase IS_RS21285 PF04127 DNA / pantothenate metabolism flavoprotein IS_RS21285 PF02441 Flavoprotein IS_RS21290 PF04002 RadC-like JAB domain IS_RS21295 PF00750 tRNA synthetases class I (R) IS_RS21295 PF05746 DALR anticodon binding domain IS_RS21295 PF03485 Arginyl tRNA synthetase N terminal domain IS_RS21310 PF00106 short chain dehydrogenase IS_RS21325 PF03033 Glycosyltransferase family 28 N-terminal domain IS_RS21340 PF17810 Arginine decarboxylase helical bundle domain IS_RS21340 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IS_RS21340 PF17944 Arginine decarboxylase C-terminal helical extension IS_RS21345 PF17284 Spermidine synthase tetramerisation domain IS_RS21370 PF07555 beta-N-acetylglucosaminidase IS_RS21370 PF00041 Fibronectin type III domain IS_RS21370 PF00754 F5/8 type C domain IS_RS21370 PF00963 Cohesin domain IS_RS21370 PF02838 Glycosyl hydrolase family 20, domain 2 IS_RS21375 PF00543 Nitrogen regulatory protein P-II IS_RS21380 PF04380 Membrane fusogenic activity IS_RS21385 PF13335 Magnesium chelatase, subunit ChlI C-terminal IS_RS21385 PF01078 Magnesium chelatase, subunit ChlI IS_RS21400 PF12792 CSS motif domain associated with EAL IS_RS21400 PF00563 EAL domain IS_RS21405 PF00487 Fatty acid desaturase IS_RS21410 PF00970 Oxidoreductase FAD-binding domain IS_RS21410 PF00175 Oxidoreductase NAD-binding domain IS_RS21410 PF00111 2Fe-2S iron-sulfur cluster binding domain IS_RS21415 PF00440 Bacterial regulatory proteins, tetR family IS_RS21440 PF01139 tRNA-splicing ligase RtcB IS_RS21480 PF08338 Domain of unknown function (DUF1731) IS_RS21480 PF01370 NAD dependent epimerase/dehydratase family IS_RS21485 PF00486 Transcriptional regulatory protein, C terminal IS_RS21485 PF00072 Response regulator receiver domain IS_RS21490 PF08521 Two-component sensor kinase N-terminal IS_RS21490 PF00512 His Kinase A (phospho-acceptor) domain IS_RS21490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS21510 PF00595 PDZ domain IS_RS21530 PF01594 AI-2E family transporter IS_RS21535 PF13419 Haloacid dehalogenase-like hydrolase IS_RS21540 PF02789 Cytosol aminopeptidase family, N-terminal domain IS_RS21540 PF00883 Cytosol aminopeptidase family, catalytic domain IS_RS21550 PF04542 Sigma-70 region 2 IS_RS21550 PF08281 Sigma-70, region 4 IS_RS21555 PF00199 Catalase IS_RS21570 PF00196 Bacterial regulatory proteins, luxR family IS_RS21570 PF00072 Response regulator receiver domain IS_RS21575 PF07730 Histidine kinase IS_RS21580 PF13533 Biotin-lipoyl like IS_RS21585 PF00005 ABC transporter IS_RS21605 PF00892 EamA-like transporter family IS_RS21610 PF00892 EamA-like transporter family IS_RS21625 PF00753 Metallo-beta-lactamase superfamily IS_RS21630 PF00579 tRNA synthetases class I (W and Y) IS_RS21635 PF05532 CsbD-like IS_RS21650 PF00491 Arginase family IS_RS21675 PF02223 Thymidylate kinase IS_RS21695 PF03309 Type III pantothenate kinase IS_RS21700 PF08279 HTH domain IS_RS21700 PF03099 Biotin/lipoate A/B protein ligase family IS_RS21700 PF02237 Biotin protein ligase C terminal domain IS_RS21710 PF06167 Glucose-regulated metallo-peptidase M90 IS_RS21725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS21730 PF00486 Transcriptional regulatory protein, C terminal IS_RS21730 PF00072 Response regulator receiver domain IS_RS21740 PF01207 Dihydrouridine synthase (Dus) IS_RS21760 PF00199 Catalase IS_RS21760 PF06628 Catalase-related immune-responsive IS_RS21765 PF13307 Helicase C-terminal domain IS_RS21765 PF06733 DEAD_2 IS_RS21780 PF08501 Shikimate dehydrogenase substrate binding domain IS_RS21780 PF01488 Shikimate / quinate 5-dehydrogenase IS_RS21780 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IS_RS21800 PF00490 Delta-aminolevulinic acid dehydratase IS_RS21825 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region IS_RS21825 PF00326 Prolyl oligopeptidase family IS_RS21830 PF00043 Glutathione S-transferase, C-terminal domain IS_RS21830 PF02798 Glutathione S-transferase, N-terminal domain IS_RS21855 PF04820 Tryptophan halogenase IS_RS21870 PF00005 ABC transporter IS_RS21880 PF01381 Helix-turn-helix IS_RS21895 PF02583 Metal-sensitive transcriptional repressor IS_RS21900 PF01545 Cation efflux family IS_RS21905 PF00175 Oxidoreductase NAD-binding domain IS_RS21905 PF01383 CpcD/allophycocyanin linker domain IS_RS21910 PF00005 ABC transporter IS_RS21915 PF01061 ABC-2 type transporter IS_RS21920 PF02558 Ketopantoate reductase PanE/ApbA IS_RS21920 PF08546 Ketopantoate reductase PanE/ApbA C terminal IS_RS21945 PF00258 Flavodoxin IS_RS21950 PF00268 Ribonucleotide reductase, small chain IS_RS21955 PF00317 Ribonucleotide reductase, all-alpha domain IS_RS21955 PF02867 Ribonucleotide reductase, barrel domain IS_RS21955 PF03477 ATP cone domain IS_RS21965 PF00583 Acetyltransferase (GNAT) family IS_RS21965 PF13380 CoA binding domain IS_RS21965 PF13607 Succinyl-CoA ligase like flavodoxin domain IS_RS21970 PF00571 CBS domain IS_RS21970 PF03448 MgtE intracellular N domain IS_RS21970 PF01769 Divalent cation transporter IS_RS21975 PF00194 Eukaryotic-type carbonic anhydrase IS_RS21985 PF00999 Sodium/hydrogen exchanger family IS_RS21985 PF02254 TrkA-N domain IS_RS21995 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IS_RS21995 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IS_RS22000 PF00723 Glycosyl hydrolases family 15 IS_RS22010 PF05166 YcgL domain IS_RS22015 PF02801 Beta-ketoacyl synthase, C-terminal domain IS_RS22015 PF00109 Beta-ketoacyl synthase, N-terminal domain IS_RS22025 PF00535 Glycosyl transferase family 2 IS_RS22035 PF01609 Transposase DDE domain IS_RS22035 PF05598 Transposase domain (DUF772) IS_RS22085 PF07977 FabA-like domain IS_RS22090 PF01553 Acyltransferase IS_RS22100 PF00550 Phosphopantetheine attachment site IS_RS22105 PF04820 Tryptophan halogenase IS_RS22135 PF01218 Coproporphyrinogen III oxidase IS_RS22145 PF00476 DNA polymerase family A IS_RS22145 PF01612 3'-5' exonuclease IS_RS22145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IS_RS22145 PF01367 5'-3' exonuclease, C-terminal SAM fold IS_RS22155 PF06812 ImpA, N-terminal, type VI secretion system IS_RS22175 PF00069 Protein kinase domain IS_RS22190 PF06761 Intracellular multiplication and human macrophage-killing IS_RS22190 PF14331 ImcF-related N-terminal domain IS_RS22190 PF06744 Type VI secretion protein IcmF C-terminal IS_RS22200 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IS_RS22205 PF00248 Aldo/keto reductase family IS_RS22210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS22210 PF03466 LysR substrate binding domain IS_RS22225 PF04717 Type VI secretion system, phage-baseplate injector IS_RS22240 PF03793 PASTA domain IS_RS22240 PF00069 Protein kinase domain IS_RS22250 PF08281 Sigma-70, region 4 IS_RS22250 PF04542 Sigma-70 region 2 IS_RS22265 PF00328 Histidine phosphatase superfamily (branch 2) IS_RS22305 PF01527 Transposase IS_RS22310 PF13683 Integrase core domain IS_RS22310 PF13276 HTH-like domain IS_RS22315 PF10431 C-terminal, D2-small domain, of ClpB protein IS_RS22315 PF17871 AAA lid domain IS_RS22315 PF07724 AAA domain (Cdc48 subfamily) IS_RS22315 PF00004 ATPase family associated with various cellular activities (AAA) IS_RS22325 PF05947 Type VI secretion system, TssF IS_RS22330 PF04965 Gene 25-like lysozyme IS_RS22335 PF07024 ImpE protein IS_RS22340 PF05638 Type VI secretion system effector, Hcp IS_RS22345 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IS_RS22350 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 IS_RS22365 PF12464 Maltose acetyltransferase IS_RS22365 PF14602 Hexapeptide repeat of succinyl-transferase IS_RS22375 PF13361 UvrD-like helicase C-terminal domain IS_RS22375 PF00580 UvrD/REP helicase N-terminal domain IS_RS22390 PF13396 Phospholipase_D-nuclease N-terminal IS_RS22390 PF13091 PLD-like domain IS_RS22395 PF03466 LysR substrate binding domain IS_RS22395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS22400 PF03737 Aldolase/RraA IS_RS22405 PF04303 PrpF protein IS_RS22410 PF04909 Amidohydrolase IS_RS22415 PF00471 Ribosomal protein L33 IS_RS22420 PF00830 Ribosomal L28 family IS_RS22430 PF00873 AcrB/AcrD/AcrF family IS_RS22435 PF13533 Biotin-lipoyl like IS_RS22455 PF02527 rRNA small subunit methyltransferase G IS_RS22460 PF16655 PhoD-like phosphatase, N-terminal domain IS_RS22460 PF09423 PhoD-like phosphatase IS_RS22465 PF09423 PhoD-like phosphatase IS_RS22465 PF16655 PhoD-like phosphatase, N-terminal domain IS_RS22470 PF01648 4'-phosphopantetheinyl transferase superfamily IS_RS22480 PF04226 Transglycosylase associated protein IS_RS22490 PF03372 Endonuclease/Exonuclease/phosphatase family IS_RS22500 PF00474 Sodium:solute symporter family IS_RS22505 PF04341 Protein of unknown function, DUF485 IS_RS22515 PF16177 Acetyl-coenzyme A synthetase N-terminus IS_RS22515 PF00501 AMP-binding enzyme IS_RS22515 PF13193 AMP-binding enzyme C-terminal domain IS_RS22520 PF00196 Bacterial regulatory proteins, luxR family IS_RS22520 PF00072 Response regulator receiver domain IS_RS22545 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain IS_RS22545 PF04616 Glycosyl hydrolases family 43 IS_RS22555 PF00248 Aldo/keto reductase family IS_RS22570 PF01557 Fumarylacetoacetate (FAA) hydrolase family IS_RS22575 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IS_RS22575 PF13378 Enolase C-terminal domain-like IS_RS22580 PF05336 L-rhamnose mutarotase IS_RS22585 PF07690 Major Facilitator Superfamily IS_RS22590 PF09339 IclR helix-turn-helix domain IS_RS22590 PF01614 Bacterial transcriptional regulator IS_RS22595 PF02659 Putative manganese efflux pump IS_RS22600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS22600 PF00512 His Kinase A (phospho-acceptor) domain IS_RS22610 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain IS_RS22610 PF06165 Glycosyltransferase family 36 IS_RS22625 PF13360 PQQ-like domain IS_RS22625 PF13570 PQQ-like domain IS_RS22625 PF01011 PQQ enzyme repeat IS_RS22645 PF04357 TamB, inner membrane protein subunit of TAM complex IS_RS22650 PF17243 POTRA domain TamA domain 1 IS_RS22650 PF01103 Surface antigen IS_RS22665 PF13181 Tetratricopeptide repeat IS_RS22670 PF02092 Glycyl-tRNA synthetase beta subunit IS_RS22670 PF05746 DALR anticodon binding domain IS_RS22675 PF02091 Glycyl-tRNA synthetase alpha subunit IS_RS22680 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IS_RS22680 PF00437 Type II/IV secretion system protein IS_RS22690 PF00958 GMP synthase C terminal domain IS_RS22690 PF00117 Glutamine amidotransferase class-I IS_RS22700 PF00902 Sec-independent protein translocase protein (TatC) IS_RS22705 PF02416 mttA/Hcf106 family IS_RS22710 PF02416 mttA/Hcf106 family IS_RS22720 PF00762 Ferrochelatase IS_RS22725 PF12697 Alpha/beta hydrolase family IS_RS22740 PF04381 Putative exonuclease, RdgC IS_RS22745 PF01171 PP-loop family IS_RS22755 PF00356 Bacterial regulatory proteins, lacI family IS_RS22760 PF07488 Glycosyl hydrolase family 67 middle domain IS_RS22760 PF07477 Glycosyl hydrolase family 67 C-terminus IS_RS22760 PF03648 Glycosyl hydrolase family 67 N-terminus IS_RS22770 PF13378 Enolase C-terminal domain-like IS_RS22770 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IS_RS22775 PF04616 Glycosyl hydrolases family 43 IS_RS22775 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain IS_RS22780 PF14310 Fibronectin type III-like domain IS_RS22780 PF01915 Glycosyl hydrolase family 3 C-terminal domain IS_RS22780 PF07691 PA14 domain IS_RS22780 PF00933 Glycosyl hydrolase family 3 N terminal domain IS_RS22785 PF08125 Mannitol dehydrogenase C-terminal domain IS_RS22785 PF01232 Mannitol dehydrogenase Rossmann domain IS_RS22820 PF00171 Aldehyde dehydrogenase family IS_RS22835 PF00202 Aminotransferase class-III IS_RS22845 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IS_RS22845 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IS_RS22860 PF08450 SMP-30/Gluconolactonase/LRE-like region IS_RS22865 PF00331 Glycosyl hydrolase family 10 IS_RS22870 PF02836 Glycosyl hydrolases family 2, TIM barrel domain IS_RS22870 PF02837 Glycosyl hydrolases family 2, sugar binding domain IS_RS22870 PF16355 Domain of unknown function (DUF4982) IS_RS22870 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 IS_RS22870 PF00703 Glycosyl hydrolases family 2 IS_RS22875 PF02614 Glucuronate isomerase IS_RS22880 PF00331 Glycosyl hydrolase family 10 IS_RS22880 PF03422 Carbohydrate binding module (family 6) IS_RS22880 PF00553 Cellulose binding domain IS_RS22890 PF03422 Carbohydrate binding module (family 6) IS_RS22890 PF00331 Glycosyl hydrolase family 10 IS_RS22890 PF00553 Cellulose binding domain IS_RS22910 PF04616 Glycosyl hydrolases family 43 IS_RS22940 PF08240 Alcohol dehydrogenase GroES-like domain IS_RS22940 PF14765 Polyketide synthase dehydratase IS_RS22940 PF00698 Acyl transferase domain IS_RS22940 PF00107 Zinc-binding dehydrogenase IS_RS22940 PF00109 Beta-ketoacyl synthase, N-terminal domain IS_RS22940 PF02801 Beta-ketoacyl synthase, C-terminal domain IS_RS22940 PF16197 Ketoacyl-synthetase C-terminal extension IS_RS22940 PF08659 KR domain IS_RS22940 PF00550 Phosphopantetheine attachment site IS_RS22945 PF01553 Acyltransferase IS_RS22955 PF00356 Bacterial regulatory proteins, lacI family IS_RS22975 PF04820 Tryptophan halogenase IS_RS22980 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IS_RS22985 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) IS_RS22990 PF04337 Protein of unknown function, DUF480 IS_RS23005 PF13361 UvrD-like helicase C-terminal domain IS_RS23005 PF00580 UvrD/REP helicase N-terminal domain IS_RS23010 PF00265 Thymidine kinase IS_RS23015 PF00360 Phytochrome region IS_RS23015 PF01590 GAF domain IS_RS23015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IS_RS23015 PF00512 His Kinase A (phospho-acceptor) domain IS_RS23015 PF08446 PAS fold IS_RS23020 PF04349 Periplasmic glucan biosynthesis protein, MdoG IS_RS23030 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IS_RS23030 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IS_RS23030 PF06827 Zinc finger found in FPG and IleRS IS_RS23060 PF03594 Benzoate membrane transport protein IS_RS23065 PF00360 Phytochrome region IS_RS23065 PF13426 PAS domain IS_RS23065 PF08446 PAS fold IS_RS23065 PF01590 GAF domain IS_RS23070 PF01126 Heme oxygenase IS_RS23075 PF07690 Major Facilitator Superfamily IS_RS23080 PF01263 Aldose 1-epimerase IS_RS23090 PF02810 SEC-C motif IS_RS23095 PF01925 Sulfite exporter TauE/SafE IS_RS23115 PF01227 GTP cyclohydrolase I IS_RS23125 PF07869 Protein of unknown function (DUF1656) IS_RS23130 PF00529 HlyD membrane-fusion protein of T1SS IS_RS23130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IS_RS23135 PF02321 Outer membrane efflux protein IS_RS23140 PF04632 Fusaric acid resistance protein family IS_RS23145 PF00083 Sugar (and other) transporter IS_RS23165 PF13396 Phospholipase_D-nuclease N-terminal IS_RS23165 PF13091 PLD-like domain IS_RS23235 PF00849 RNA pseudouridylate synthase IS_RS23275 PF00440 Bacterial regulatory proteins, tetR family IS_RS23305 PF01381 Helix-turn-helix IS_RS23315 PF13538 UvrD-like helicase C-terminal domain IS_RS23320 PF12705 PD-(D/E)XK nuclease superfamily IS_RS23320 PF00580 UvrD/REP helicase N-terminal domain IS_RS23320 PF13361 UvrD-like helicase C-terminal domain IS_RS23325 PF17946 RecC C-terminal domain IS_RS23360 PF00005 ABC transporter IS_RS23365 PF02405 Permease MlaE IS_RS23370 PF02470 MlaD protein IS_RS23375 PF05494 MlaC protein IS_RS23385 PF04333 MlaA lipoprotein IS_RS23395 PF00255 Glutathione peroxidase IS_RS23405 PF02646 RmuC family IS_RS23410 PF08240 Alcohol dehydrogenase GroES-like domain IS_RS23410 PF00107 Zinc-binding dehydrogenase IS_RS23415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IS_RS23415 PF03466 LysR substrate binding domain IS_RS23435 PF13520 Amino acid permease IS_RS23440 PF07971 Glycosyl hydrolase family 92 IS_RS23440 PF17678 Glycosyl hydrolase family 92 N-terminal domain IS_RS23445 PF07715 TonB-dependent Receptor Plug Domain IS_RS23445 PF00593 TonB dependent receptor IS_RS23450 PF10947 Protein of unknown function (DUF2628) IS_RS23455 PF00990 Diguanylate cyclase, GGDEF domain IS_RS23460 PF13556 PucR C-terminal helix-turn-helix domain IS_RS23460 PF05651 Putative sugar diacid recognition IS_RS23460 PF17853 GGDEF-like domain IS_RS23465 PF02595 Glycerate kinase family IS_RS23470 PF07690 Major Facilitator Superfamily IS_RS23485 PF17785 PUA-like domain IS_RS23485 PF10672 S-adenosylmethionine-dependent methyltransferase IS_RS23490 PF03741 Integral membrane protein TerC family IS_RS23495 PF01694 Rhomboid family IS_RS23500 PF03009 Glycerophosphoryl diester phosphodiesterase family IS_RS23510 PF01569 PAP2 superfamily IS_RS23515 PF12631 MnmE helical domain IS_RS23515 PF10396 GTP-binding protein TrmE N-terminus IS_RS23515 PF01926 50S ribosome-binding GTPase IS_RS23520 PF01522 Polysaccharide deacetylase IS_RS23525 PF14849 YidC periplasmic domain IS_RS23525 PF02096 60Kd inner membrane protein IS_RS23530 PF00825 Ribonuclease P IS_RS23535 PF00468 Ribosomal protein L34 IS_RS23610 PF00106 short chain dehydrogenase IS_RS23645 PF00248 Aldo/keto reductase family