locus-tag class description AMD12_RS00045 PF07015 VirC1 protein AMD12_RS00065 PF03377 TAL effector repeat AMD12_RS00090 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AMD12_RS00100 PF00239 Resolvase, N terminal domain AMD12_RS00100 PF02796 Helix-turn-helix domain of resolvase AMD12_RS00135 PF02796 Helix-turn-helix domain of resolvase AMD12_RS00135 PF00239 Resolvase, N terminal domain AMD12_RS00140 PF03377 TAL effector repeat AMD12_RS00170 PF13406 Transglycosylase SLT domain AMD12_RS00175 PF13700 Domain of unknown function (DUF4158) AMD12_RS00175 PF01526 Tn3 transposase DDE domain AMD12_RS00205 PF03377 TAL effector repeat AMD12_RS00225 PF07015 VirC1 protein AMD12_RS00270 PF07057 DNA helicase TraI AMD12_RS00270 PF18340 DNA relaxase TraI 2B/2B-like domain AMD12_RS00270 PF18272 single-stranded DNA binding TraI N-terminal subdomain AMD12_RS00270 PF18340 DNA relaxase TraI 2B/2B-like domain AMD12_RS00270 PF08751 TrwC relaxase AMD12_RS00270 PF08751 TrwC relaxase AMD12_RS00270 PF18272 single-stranded DNA binding TraI N-terminal subdomain AMD12_RS00270 PF07057 DNA helicase TraI AMD12_RS00295 PF01464 Transglycosylase SLT domain AMD12_RS00300 PF00437 Type II/IV secretion system protein AMD12_RS00305 PF03743 Bacterial conjugation TrbI-like protein AMD12_RS00310 PF03524 Conjugal transfer protein AMD12_RS00385 PF02195 ParB-like nuclease domain AMD12_RS00385 PF06613 KorB C-terminal beta-barrel domain AMD12_RS00385 PF08535 KorB domain AMD12_RS00390 PF13614 AAA domain AMD12_RS00415 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AMD12_RS00420 PF02796 Helix-turn-helix domain of resolvase AMD12_RS00420 PF00239 Resolvase, N terminal domain AMD12_RS00430 PF03377 TAL effector repeat AMD12_RS00455 PF02796 Helix-turn-helix domain of resolvase AMD12_RS00455 PF00239 Resolvase, N terminal domain AMD12_RS00460 PF00239 Resolvase, N terminal domain AMD12_RS00460 PF02796 Helix-turn-helix domain of resolvase AMD12_RS00470 PF08299 Bacterial dnaA protein helix-turn-helix AMD12_RS00470 PF00308 Bacterial dnaA protein AMD12_RS00470 PF11638 DnaA N-terminal domain AMD12_RS00475 PF02768 DNA polymerase III beta subunit, C-terminal domain AMD12_RS00475 PF02767 DNA polymerase III beta subunit, central domain AMD12_RS00475 PF00712 DNA polymerase III beta subunit, N-terminal domain AMD12_RS00480 PF02463 RecF/RecN/SMC N terminal domain AMD12_RS00485 PF18053 DNA gyrase B subunit insert domain AMD12_RS00485 PF00986 DNA gyrase B subunit, carboxyl terminus AMD12_RS00485 PF01751 Toprim domain AMD12_RS00485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS00485 PF00204 DNA gyrase B AMD12_RS00495 PF01435 Peptidase family M48 AMD12_RS00505 PF03544 Gram-negative bacterial TonB protein C-terminal AMD12_RS00510 PF01618 MotA/TolQ/ExbB proton channel family AMD12_RS00515 PF02472 Biopolymer transport protein ExbD/TolR AMD12_RS00520 PF02472 Biopolymer transport protein ExbD/TolR AMD12_RS00525 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMD12_RS00535 PF13091 PLD-like domain AMD12_RS00535 PF13396 Phospholipase_D-nuclease N-terminal AMD12_RS00550 PF04055 Radical SAM superfamily AMD12_RS00560 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD12_RS00575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD12_RS00575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD12_RS00580 PF03572 Peptidase family S41 AMD12_RS00580 PF13180 PDZ domain AMD12_RS00585 PF01551 Peptidase family M23 AMD12_RS00595 PF04389 Peptidase family M28 AMD12_RS00605 PF00150 Cellulase (glycosyl hydrolase family 5) AMD12_RS00610 PF00150 Cellulase (glycosyl hydrolase family 5) AMD12_RS00615 PF00150 Cellulase (glycosyl hydrolase family 5) AMD12_RS00620 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS00620 PF00107 Zinc-binding dehydrogenase AMD12_RS00625 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD12_RS00625 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMD12_RS00630 PF01645 Conserved region in glutamate synthase AMD12_RS00630 PF00310 Glutamine amidotransferases class-II AMD12_RS00630 PF04898 Glutamate synthase central domain AMD12_RS00630 PF01493 GXGXG motif AMD12_RS00660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS00660 PF03466 LysR substrate binding domain AMD12_RS00675 PF02397 Bacterial sugar transferase AMD12_RS00680 PF02350 UDP-N-acetylglucosamine 2-epimerase AMD12_RS00690 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMD12_RS00695 PF00534 Glycosyl transferases group 1 AMD12_RS00695 PF13439 Glycosyltransferase Family 4 AMD12_RS00715 PF00733 Asparagine synthase AMD12_RS00715 PF13537 Glutamine amidotransferase domain AMD12_RS00730 PF16363 GDP-mannose 4,6 dehydratase AMD12_RS00745 PF00005 ABC transporter AMD12_RS00745 PF00664 ABC transporter transmembrane region AMD12_RS00760 PF13537 Glutamine amidotransferase domain AMD12_RS00760 PF00733 Asparagine synthase AMD12_RS00775 PF07475 HPr Serine kinase C-terminal domain AMD12_RS00775 PF02603 HPr Serine kinase N terminus AMD12_RS00780 PF00685 Sulfotransferase domain AMD12_RS00855 PF00271 Helicase conserved C-terminal domain AMD12_RS00855 PF09369 Domain of unknown function (DUF1998) AMD12_RS00855 PF00270 DEAD/DEAH box helicase AMD12_RS00860 PF03006 Haemolysin-III related AMD12_RS00875 PF00106 short chain dehydrogenase AMD12_RS00885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS00885 PF03466 LysR substrate binding domain AMD12_RS00900 PF02525 Flavodoxin-like fold AMD12_RS00960 PF05532 CsbD-like AMD12_RS00980 PF16485 Protealysin propeptide AMD12_RS00980 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD12_RS00980 PF01447 Thermolysin metallopeptidase, catalytic domain AMD12_RS00990 PF13344 Haloacid dehalogenase-like hydrolase AMD12_RS00990 PF00293 NUDIX domain AMD12_RS01010 PF00085 Thioredoxin AMD12_RS01020 PF08946 Osmosensory transporter coiled coil AMD12_RS01020 PF00083 Sugar (and other) transporter AMD12_RS01060 PF07726 ATPase family associated with various cellular activities (AAA) AMD12_RS01060 PF17863 AAA lid domain AMD12_RS01090 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMD12_RS01095 PF00155 Aminotransferase class I and II AMD12_RS01100 PF00593 TonB dependent receptor AMD12_RS01100 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS01110 PF07883 Cupin domain AMD12_RS01115 PF00171 Aldehyde dehydrogenase family AMD12_RS01135 PF02735 Ku70/Ku80 beta-barrel domain AMD12_RS01140 PF01070 FMN-dependent dehydrogenase AMD12_RS01145 PF00144 Beta-lactamase AMD12_RS01150 PF07730 Histidine kinase AMD12_RS01155 PF00072 Response regulator receiver domain AMD12_RS01155 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS01175 PF18500 CadC C-terminal domain 1 AMD12_RS01175 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS01180 PF07055 Enoyl reductase FAD binding domain AMD12_RS01180 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMD12_RS01180 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMD12_RS01190 PF00294 pfkB family carbohydrate kinase AMD12_RS01255 PF00128 Alpha amylase, catalytic domain AMD12_RS01255 PF11896 Domain of unknown function (DUF3416) AMD12_RS01260 PF16657 Maltogenic Amylase, C-terminal domain AMD12_RS01260 PF00128 Alpha amylase, catalytic domain AMD12_RS01265 PF00128 Alpha amylase, catalytic domain AMD12_RS01265 PF02806 Alpha amylase, C-terminal all-beta domain AMD12_RS01265 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD12_RS01275 PF00248 Aldo/keto reductase family AMD12_RS01280 PF00135 Carboxylesterase family AMD12_RS01285 PF13472 GDSL-like Lipase/Acylhydrolase family AMD12_RS01285 PF07859 alpha/beta hydrolase fold AMD12_RS01295 PF03480 Bacterial extracellular solute-binding protein, family 7 AMD12_RS01305 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMD12_RS01310 PF04616 Glycosyl hydrolases family 43 AMD12_RS01310 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD12_RS01315 PF00356 Bacterial regulatory proteins, lacI family AMD12_RS01320 PF04962 KduI/IolB family AMD12_RS01335 PF00657 GDSL-like Lipase/Acylhydrolase AMD12_RS01350 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMD12_RS01355 PF01037 Lrp/AsnC ligand binding domain AMD12_RS01360 PF07660 Secretin and TonB N terminus short domain AMD12_RS01360 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS01360 PF00593 TonB dependent receptor AMD12_RS01365 PF01734 Patatin-like phospholipase AMD12_RS01375 PF00005 ABC transporter AMD12_RS01390 PF00005 ABC transporter AMD12_RS01395 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS01405 PF12867 DinB superfamily AMD12_RS01405 PF03781 Sulfatase-modifying factor enzyme 1 AMD12_RS01425 PF01381 Helix-turn-helix AMD12_RS01450 PF10609 NUBPL iron-transfer P-loop NTPase AMD12_RS01450 PF01883 Iron-sulfur cluster assembly protein AMD12_RS01465 PF13091 PLD-like domain AMD12_RS01470 PF03061 Thioesterase superfamily AMD12_RS01500 PF00107 Zinc-binding dehydrogenase AMD12_RS01500 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS01510 PF02673 Bacitracin resistance protein BacA AMD12_RS01515 PF03951 Glutamine synthetase, beta-Grasp domain AMD12_RS01515 PF00120 Glutamine synthetase, catalytic domain AMD12_RS01520 PF00543 Nitrogen regulatory protein P-II AMD12_RS01525 PF00909 Ammonium Transporter Family AMD12_RS01530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS01530 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS01530 PF00989 PAS fold AMD12_RS01535 PF00072 Response regulator receiver domain AMD12_RS01535 PF00158 Sigma-54 interaction domain AMD12_RS01535 PF02954 Bacterial regulatory protein, Fis family AMD12_RS01540 PF00080 Copper/zinc superoxide dismutase (SODC) AMD12_RS01545 PF00080 Copper/zinc superoxide dismutase (SODC) AMD12_RS01550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD12_RS01560 PF00108 Thiolase, N-terminal domain AMD12_RS01560 PF02803 Thiolase, C-terminal domain AMD12_RS01595 PF00581 Rhodanese-like domain AMD12_RS01600 PF02556 Preprotein translocase subunit SecB AMD12_RS01605 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMD12_RS01605 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMD12_RS01615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD12_RS01615 PF00205 Thiamine pyrophosphate enzyme, central domain AMD12_RS01615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD12_RS01620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS01625 PF02954 Bacterial regulatory protein, Fis family AMD12_RS01625 PF00158 Sigma-54 interaction domain AMD12_RS01625 PF00072 Response regulator receiver domain AMD12_RS01640 PF07690 Major Facilitator Superfamily AMD12_RS01645 PF00588 SpoU rRNA Methylase family AMD12_RS01660 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD12_RS01660 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD12_RS01665 PF02661 Fic/DOC family AMD12_RS01665 PF13784 Fic/DOC family N-terminal AMD12_RS01670 PF00561 alpha/beta hydrolase fold AMD12_RS01675 PF03692 Putative zinc- or iron-chelating domain AMD12_RS01680 PF00501 AMP-binding enzyme AMD12_RS01685 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD12_RS01700 PF01820 D-ala D-ala ligase N-terminus AMD12_RS01700 PF07478 D-ala D-ala ligase C-terminus AMD12_RS01710 PF03109 ABC1 family AMD12_RS01720 PF00849 RNA pseudouridylate synthase AMD12_RS01730 PF00472 RF-1 domain AMD12_RS01740 PF01112 Asparaginase AMD12_RS01745 PF01432 Peptidase family M3 AMD12_RS01750 PF12706 Beta-lactamase superfamily domain AMD12_RS01770 PF12833 Helix-turn-helix domain AMD12_RS01775 PF00999 Sodium/hydrogen exchanger family AMD12_RS01780 PF03466 LysR substrate binding domain AMD12_RS01780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS01785 PF01274 Malate synthase AMD12_RS01790 PF00463 Isocitrate lyase family AMD12_RS01795 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS01815 PF00326 Prolyl oligopeptidase family AMD12_RS01820 PF00364 Biotin-requiring enzyme AMD12_RS01820 PF00289 Biotin carboxylase, N-terminal domain AMD12_RS01820 PF02785 Biotin carboxylase C-terminal domain AMD12_RS01820 PF18140 Propionyl-coenzyme A carboxylase BT domain AMD12_RS01820 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD12_RS01825 PF01039 Carboxyl transferase domain AMD12_RS01830 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD12_RS01830 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD12_RS01830 PF02770 Acyl-CoA dehydrogenase, middle domain AMD12_RS01885 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMD12_RS01885 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMD12_RS01910 PF03969 AFG1-like ATPase AMD12_RS01915 PF01047 MarR family AMD12_RS01920 PF02566 OsmC-like protein AMD12_RS01950 PF00107 Zinc-binding dehydrogenase AMD12_RS01950 PF16884 N-terminal domain of oxidoreductase AMD12_RS01955 PF00248 Aldo/keto reductase family AMD12_RS01965 PF00849 RNA pseudouridylate synthase AMD12_RS01970 PF00593 TonB dependent receptor AMD12_RS01980 PF00270 DEAD/DEAH box helicase AMD12_RS01980 PF00271 Helicase conserved C-terminal domain AMD12_RS01980 PF04408 Helicase associated domain (HA2) AMD12_RS01980 PF08482 ATP-dependent helicase C-terminal AMD12_RS01990 PF07308 Protein of unknown function (DUF1456) AMD12_RS01995 PF00576 HIUase/Transthyretin family AMD12_RS02000 PF13454 FAD-NAD(P)-binding AMD12_RS02005 PF09349 OHCU decarboxylase AMD12_RS02005 PF01014 Uricase AMD12_RS02020 PF00266 Aminotransferase class-V AMD12_RS02025 PF01546 Peptidase family M20/M25/M40 AMD12_RS02025 PF07687 Peptidase dimerisation domain AMD12_RS02030 PF03466 LysR substrate binding domain AMD12_RS02030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS02035 PF07690 Major Facilitator Superfamily AMD12_RS02050 PF01425 Amidase AMD12_RS02065 PF00860 Permease family AMD12_RS02075 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD12_RS02080 PF00355 Rieske [2Fe-2S] domain AMD12_RS02085 PF03466 LysR substrate binding domain AMD12_RS02085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS02090 PF01026 TatD related DNase AMD12_RS02105 PF03466 LysR substrate binding domain AMD12_RS02105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS02110 PF07690 Major Facilitator Superfamily AMD12_RS02125 PF02146 Sir2 family AMD12_RS02130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD12_RS02135 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD12_RS02135 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD12_RS02145 PF00551 Formyl transferase AMD12_RS02150 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS02150 PF00072 Response regulator receiver domain AMD12_RS02155 PF00672 HAMP domain AMD12_RS02155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS02155 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS02160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD12_RS02160 PF00529 HlyD membrane-fusion protein of T1SS AMD12_RS02165 PF00873 AcrB/AcrD/AcrF family AMD12_RS02170 PF02321 Outer membrane efflux protein AMD12_RS02180 PF02219 Methylenetetrahydrofolate reductase AMD12_RS02185 PF02677 Epoxyqueuosine reductase QueH AMD12_RS02190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS02190 PF03466 LysR substrate binding domain AMD12_RS02195 PF03358 NADPH-dependent FMN reductase AMD12_RS02205 PF08267 Cobalamin-independent synthase, N-terminal domain AMD12_RS02205 PF01717 Cobalamin-independent synthase, Catalytic domain AMD12_RS02210 PF03812 2-keto-3-deoxygluconate permease AMD12_RS02220 PF05368 NmrA-like family AMD12_RS02225 PF01638 HxlR-like helix-turn-helix AMD12_RS02260 PF00589 Phage integrase family AMD12_RS02260 PF13495 Phage integrase, N-terminal SAM-like domain AMD12_RS02265 PF00920 Dehydratase family AMD12_RS02285 PF00132 Bacterial transferase hexapeptide (six repeats) AMD12_RS02295 PF07690 Major Facilitator Superfamily AMD12_RS02300 PF01966 HD domain AMD12_RS02300 PF11871 Domain of unknown function (DUF3391) AMD12_RS02320 PF00171 Aldehyde dehydrogenase family AMD12_RS02330 PF01494 FAD binding domain AMD12_RS02340 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD12_RS02340 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD12_RS02345 PF00230 Major intrinsic protein AMD12_RS02350 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMD12_RS02350 PF01266 FAD dependent oxidoreductase AMD12_RS02355 PF08220 DeoR-like helix-turn-helix domain AMD12_RS02355 PF00455 DeoR C terminal sensor domain AMD12_RS02360 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD12_RS02360 PF00970 Oxidoreductase FAD-binding domain AMD12_RS02365 PF00355 Rieske [2Fe-2S] domain AMD12_RS02370 PF01144 Coenzyme A transferase AMD12_RS02375 PF01144 Coenzyme A transferase AMD12_RS02380 PF00108 Thiolase, N-terminal domain AMD12_RS02380 PF02803 Thiolase, C-terminal domain AMD12_RS02385 PF00775 Dioxygenase AMD12_RS02385 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMD12_RS02395 PF10397 Adenylosuccinate lyase C-terminus AMD12_RS02395 PF00206 Lyase AMD12_RS02400 PF12146 Serine aminopeptidase, S33 AMD12_RS02405 PF02627 Carboxymuconolactone decarboxylase family AMD12_RS02415 PF09339 IclR helix-turn-helix domain AMD12_RS02415 PF01614 Bacterial transcriptional regulator AMD12_RS02425 PF07859 alpha/beta hydrolase fold AMD12_RS02430 PF10677 Protein of unknown function (DUF2490) AMD12_RS02435 PF13932 GidA associated domain AMD12_RS02435 PF01134 Glucose inhibited division protein A AMD12_RS02445 PF00291 Pyridoxal-phosphate dependent enzyme AMD12_RS02465 PF13649 Methyltransferase domain AMD12_RS02475 PF12697 Alpha/beta hydrolase family AMD12_RS02485 PF00155 Aminotransferase class I and II AMD12_RS02490 PF04055 Radical SAM superfamily AMD12_RS02490 PF06968 Biotin and Thiamin Synthesis associated domain AMD12_RS02500 PF01040 UbiA prenyltransferase family AMD12_RS02515 PF05819 NolX protein AMD12_RS02550 PF01313 Bacterial export proteins, family 3 AMD12_RS02555 PF00813 FliP family AMD12_RS02570 PF00771 FHIPEP family AMD12_RS02575 PF01312 FlhB HrpN YscU SpaS Family AMD12_RS02590 PF01514 Secretory protein of YscJ/FliF family AMD12_RS02605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD12_RS02605 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD12_RS02605 PF18269 T3SS EscN ATPase C-terminal domain AMD12_RS02615 PF01311 Bacterial export proteins, family 1 AMD12_RS02620 PF03958 Bacterial type II/III secretion system short domain AMD12_RS02620 PF00263 Bacterial type II and III secretion system protein AMD12_RS02630 PF01464 Transglycosylase SLT domain AMD12_RS02645 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMD12_RS02645 PF00924 Mechanosensitive ion channel AMD12_RS02645 PF12795 Mechanosensitive ion channel porin domain AMD12_RS02650 PF00884 Sulfatase AMD12_RS02655 PF03109 ABC1 family AMD12_RS02660 PF05661 Protein of unknown function (DUF808) AMD12_RS02665 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS02670 PF08323 Starch synthase catalytic domain AMD12_RS02670 PF00534 Glycosyl transferases group 1 AMD12_RS02675 PF00128 Alpha amylase, catalytic domain AMD12_RS02675 PF02806 Alpha amylase, C-terminal all-beta domain AMD12_RS02675 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD12_RS02680 PF11941 Domain of unknown function (DUF3459) AMD12_RS02680 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD12_RS02680 PF00128 Alpha amylase, catalytic domain AMD12_RS02685 PF02446 4-alpha-glucanotransferase AMD12_RS02690 PF00128 Alpha amylase, catalytic domain AMD12_RS02700 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD12_RS02700 PF00128 Alpha amylase, catalytic domain AMD12_RS02705 PF13460 NAD(P)H-binding AMD12_RS02725 PF06903 VirK protein AMD12_RS02730 PF02321 Outer membrane efflux protein AMD12_RS02745 PF00873 AcrB/AcrD/AcrF family AMD12_RS02760 PF00271 Helicase conserved C-terminal domain AMD12_RS02760 PF00270 DEAD/DEAH box helicase AMD12_RS02765 PF02817 e3 binding domain AMD12_RS02765 PF00364 Biotin-requiring enzyme AMD12_RS02765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD12_RS02775 PF02780 Transketolase, C-terminal domain AMD12_RS02775 PF02779 Transketolase, pyrimidine binding domain AMD12_RS02780 PF00676 Dehydrogenase E1 component AMD12_RS02790 PF03301 Tryptophan 2,3-dioxygenase AMD12_RS02795 PF00854 POT family AMD12_RS02805 PF01047 MarR family AMD12_RS02810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD12_RS02815 PF04209 homogentisate 1,2-dioxygenase AMD12_RS02830 PF03334 Na+/H+ antiporter subunit AMD12_RS02835 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AMD12_RS02845 PF00361 Proton-conducting membrane transporter AMD12_RS02850 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD12_RS02855 PF00361 Proton-conducting membrane transporter AMD12_RS02855 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AMD12_RS02855 PF13244 Domain of unknown function (DUF4040) AMD12_RS02855 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD12_RS02875 PF00182 Chitinase class I AMD12_RS02895 PF01259 SAICAR synthetase AMD12_RS02900 PF05099 Tellurite resistance protein TerB AMD12_RS02900 PF00226 DnaJ domain AMD12_RS02910 PF00834 Ribulose-phosphate 3 epimerase family AMD12_RS02915 PF00583 Acetyltransferase (GNAT) family AMD12_RS02920 PF00781 Diacylglycerol kinase catalytic domain AMD12_RS02925 PF04715 Anthranilate synthase component I, N terminal region AMD12_RS02925 PF00425 chorismate binding enzyme AMD12_RS02935 PF00117 Glutamine amidotransferase class-I AMD12_RS02945 PF02885 Glycosyl transferase family, helical bundle domain AMD12_RS02945 PF00591 Glycosyl transferase family, a/b domain AMD12_RS02950 PF00218 Indole-3-glycerol phosphate synthase AMD12_RS02960 PF00325 Bacterial regulatory proteins, crp family AMD12_RS02960 PF00027 Cyclic nucleotide-binding domain AMD12_RS02965 PF02675 S-adenosylmethionine decarboxylase AMD12_RS02970 PF00893 Small Multidrug Resistance protein AMD12_RS02975 PF03232 Ubiquinone biosynthesis protein COQ7 AMD12_RS02980 PF00572 Ribosomal protein L13 AMD12_RS02985 PF00380 Ribosomal protein S9/S16 AMD12_RS03000 PF00293 NUDIX domain AMD12_RS03010 PF00210 Ferritin-like domain AMD12_RS03015 PF01627 Hpt domain AMD12_RS03015 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD12_RS03015 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS03015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS03015 PF00672 HAMP domain AMD12_RS03015 PF00072 Response regulator receiver domain AMD12_RS03020 PF00072 Response regulator receiver domain AMD12_RS03020 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS03040 PF01521 Iron-sulphur cluster biosynthesis AMD12_RS03060 PF00293 NUDIX domain AMD12_RS03060 PF09297 NADH pyrophosphatase zinc ribbon domain AMD12_RS03060 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMD12_RS03065 PF17113 Regulatory signalling modulator protein AmpE AMD12_RS03065 PF03186 CobD/Cbib protein AMD12_RS03085 PF07690 Major Facilitator Superfamily AMD12_RS03090 PF03466 LysR substrate binding domain AMD12_RS03090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS03095 PF07690 Major Facilitator Superfamily AMD12_RS03100 PF12805 FUSC-like inner membrane protein yccS AMD12_RS03110 PF02844 Phosphoribosylglycinamide synthetase, N domain AMD12_RS03110 PF02843 Phosphoribosylglycinamide synthetase, C domain AMD12_RS03110 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMD12_RS03120 PF01808 AICARFT/IMPCHase bienzyme AMD12_RS03120 PF02142 MGS-like domain AMD12_RS03125 PF01066 CDP-alcohol phosphatidyltransferase AMD12_RS03130 PF12146 Serine aminopeptidase, S33 AMD12_RS03130 PF12147 Putative methyltransferase AMD12_RS03135 PF00782 Dual specificity phosphatase, catalytic domain AMD12_RS03165 PF02954 Bacterial regulatory protein, Fis family AMD12_RS03180 PF01381 Helix-turn-helix AMD12_RS03205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD12_RS03205 PF00289 Biotin carboxylase, N-terminal domain AMD12_RS03205 PF02785 Biotin carboxylase C-terminal domain AMD12_RS03215 PF00364 Biotin-requiring enzyme AMD12_RS03220 PF01220 Dehydroquinase class II AMD12_RS03225 PF11412 Disulphide bond corrector protein DsbC AMD12_RS03225 PF02683 Cytochrome C biogenesis protein transmembrane region AMD12_RS03230 PF03091 CutA1 divalent ion tolerance protein AMD12_RS03245 PF01852 START domain AMD12_RS03255 PF00106 short chain dehydrogenase AMD12_RS03260 PF04231 Endonuclease I AMD12_RS03265 PF00166 Chaperonin 10 Kd subunit AMD12_RS03270 PF00118 TCP-1/cpn60 chaperonin family AMD12_RS03280 PF00593 TonB dependent receptor AMD12_RS03280 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS03285 PF00793 DAHP synthetase I family AMD12_RS03300 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD12_RS03310 PF08335 GlnD PII-uridylyltransferase AMD12_RS03310 PF03710 Glutamate-ammonia ligase adenylyltransferase AMD12_RS03315 PF02592 Putative vitamin uptake transporter AMD12_RS03335 PF00881 Nitroreductase family AMD12_RS03340 PF04264 YceI-like domain AMD12_RS03365 PF16957 Malonate decarboxylase, alpha subunit, transporter AMD12_RS03370 PF06857 Malonate decarboxylase delta subunit (MdcD) AMD12_RS03375 PF01039 Carboxyl transferase domain AMD12_RS03385 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AMD12_RS03390 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AMD12_RS03395 PF00698 Acyl transferase domain AMD12_RS03405 PF07729 FCD domain AMD12_RS03405 PF00392 Bacterial regulatory proteins, gntR family AMD12_RS03410 PF13419 Haloacid dehalogenase-like hydrolase AMD12_RS03440 PF07745 Glycosyl hydrolase family 53 AMD12_RS03445 PF00456 Transketolase, thiamine diphosphate binding domain AMD12_RS03445 PF17831 Pyruvate dehydrogenase E1 component middle domain AMD12_RS03460 PF00106 short chain dehydrogenase AMD12_RS03475 PF00106 short chain dehydrogenase AMD12_RS03485 PF13409 Glutathione S-transferase, N-terminal domain AMD12_RS03510 PF03176 MMPL family AMD12_RS03510 PF12823 Domain of unknown function (DUF3817) AMD12_RS03515 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD12_RS03515 PF00326 Prolyl oligopeptidase family AMD12_RS03520 PF07759 Protein of unknown function (DUF1615) AMD12_RS03530 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS03555 PF00892 EamA-like transporter family AMD12_RS03560 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD12_RS03570 PF00324 Amino acid permease AMD12_RS03580 PF01544 CorA-like Mg2+ transporter protein AMD12_RS03590 PF01204 Trehalase AMD12_RS03600 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD12_RS03600 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD12_RS03625 PF00563 EAL domain AMD12_RS03625 PF08448 PAS fold AMD12_RS03625 PF08447 PAS fold AMD12_RS03625 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS03630 PF00672 HAMP domain AMD12_RS03630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS03630 PF02203 Tar ligand binding domain homologue AMD12_RS03635 PF00553 Cellulose binding domain AMD12_RS03635 PF00150 Cellulase (glycosyl hydrolase family 5) AMD12_RS03640 PF00916 Sulfate permease family AMD12_RS03640 PF01740 STAS domain AMD12_RS03650 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS03665 PF13632 Glycosyl transferase family group 2 AMD12_RS03675 PF06580 Histidine kinase AMD12_RS03675 PF07694 5TMR of 5TMR-LYT AMD12_RS03680 PF04397 LytTr DNA-binding domain AMD12_RS03680 PF00072 Response regulator receiver domain AMD12_RS03685 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMD12_RS03685 PF03900 Porphobilinogen deaminase, C-terminal domain AMD12_RS03710 PF00326 Prolyl oligopeptidase family AMD12_RS03710 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD12_RS03720 PF00155 Aminotransferase class I and II AMD12_RS03725 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD12_RS03725 PF00326 Prolyl oligopeptidase family AMD12_RS03730 PF04304 Protein of unknown function (DUF454) AMD12_RS03740 PF01678 Diaminopimelate epimerase AMD12_RS03750 PF00589 Phage integrase family AMD12_RS03750 PF02899 Phage integrase, N-terminal SAM-like domain AMD12_RS03755 PF00227 Proteasome subunit AMD12_RS03760 PF00004 ATPase family associated with various cellular activities (AAA) AMD12_RS03760 PF10431 C-terminal, D2-small domain, of ClpB protein AMD12_RS03760 PF07724 AAA domain (Cdc48 subfamily) AMD12_RS03770 PF13673 Acetyltransferase (GNAT) domain AMD12_RS03775 PF13533 Biotin-lipoyl like AMD12_RS03785 PF01209 ubiE/COQ5 methyltransferase family AMD12_RS03790 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS03790 PF00563 EAL domain AMD12_RS03790 PF03707 Bacterial signalling protein N terminal repeat AMD12_RS03795 PF01433 Peptidase family M1 domain AMD12_RS03795 PF11838 ERAP1-like C-terminal domain AMD12_RS03815 PF13360 PQQ-like domain AMD12_RS03820 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD12_RS03835 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS03835 PF00107 Zinc-binding dehydrogenase AMD12_RS03845 PF01590 GAF domain AMD12_RS03845 PF02954 Bacterial regulatory protein, Fis family AMD12_RS03845 PF00158 Sigma-54 interaction domain AMD12_RS03850 PF00294 pfkB family carbohydrate kinase AMD12_RS03860 PF04085 rod shape-determining protein MreC AMD12_RS03870 PF00905 Penicillin binding protein transpeptidase domain AMD12_RS03870 PF03717 Penicillin-binding Protein dimerisation domain AMD12_RS03875 PF01098 Cell cycle protein AMD12_RS03880 PF00295 Glycosyl hydrolases family 28 AMD12_RS03885 PF13406 Transglycosylase SLT domain AMD12_RS03890 PF03330 Lytic transglycolase AMD12_RS03890 PF05036 Sporulation related domain AMD12_RS03900 PF07943 Penicillin-binding protein 5, C-terminal domain AMD12_RS03900 PF00768 D-alanyl-D-alanine carboxypeptidase AMD12_RS03910 PF04359 Protein of unknown function (DUF493) AMD12_RS03915 PF03099 Biotin/lipoate A/B protein ligase family AMD12_RS03920 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMD12_RS03920 PF04055 Radical SAM superfamily AMD12_RS03925 PF03572 Peptidase family S41 AMD12_RS03925 PF11818 C-terminal domain of tail specific protease (DUF3340) AMD12_RS03925 PF00595 PDZ domain AMD12_RS03925 PF17804 Tail specific protease N-terminal domain AMD12_RS03935 PF03466 LysR substrate binding domain AMD12_RS03935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS03945 PF00293 NUDIX domain AMD12_RS03945 PF01467 Cytidylyltransferase-like AMD12_RS03980 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD12_RS03980 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMD12_RS03985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD12_RS03985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD12_RS03990 PF04972 BON domain AMD12_RS03995 PF08446 PAS fold AMD12_RS03995 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS03995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS03995 PF01590 GAF domain AMD12_RS03995 PF00360 Phytochrome region AMD12_RS04000 PF00072 Response regulator receiver domain AMD12_RS04005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS04005 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS04010 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD12_RS04015 PF00106 short chain dehydrogenase AMD12_RS04055 PF03958 Bacterial type II/III secretion system short domain AMD12_RS04055 PF00263 Bacterial type II and III secretion system protein AMD12_RS04060 PF00437 Type II/IV secretion system protein AMD12_RS04065 PF00482 Type II secretion system (T2SS), protein F AMD12_RS04070 PF08334 Type II secretion system (T2SS), protein G AMD12_RS04070 PF07963 Prokaryotic N-terminal methylation motif AMD12_RS04075 PF12019 Type II transport protein GspH AMD12_RS04075 PF07963 Prokaryotic N-terminal methylation motif AMD12_RS04080 PF07963 Prokaryotic N-terminal methylation motif AMD12_RS04080 PF02501 Type II secretion system (T2SS), protein I AMD12_RS04085 PF07963 Prokaryotic N-terminal methylation motif AMD12_RS04085 PF11612 Type II secretion system (T2SS), protein J AMD12_RS04090 PF03934 Type II secretion system (T2SS), protein K AMD12_RS04130 PF00392 Bacterial regulatory proteins, gntR family AMD12_RS04130 PF07702 UTRA domain AMD12_RS04135 PF07690 Major Facilitator Superfamily AMD12_RS04140 PF00356 Bacterial regulatory proteins, lacI family AMD12_RS04145 PF01380 SIS domain AMD12_RS04150 PF01979 Amidohydrolase family AMD12_RS04160 PF01743 Poly A polymerase head domain AMD12_RS04160 PF01966 HD domain AMD12_RS04160 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD12_RS04165 PF05199 GMC oxidoreductase AMD12_RS04165 PF00732 GMC oxidoreductase AMD12_RS04170 PF00171 Aldehyde dehydrogenase family AMD12_RS04175 PF02028 BCCT, betaine/carnitine/choline family transporter AMD12_RS04185 PF01323 DSBA-like thioredoxin domain AMD12_RS04195 PF00034 Cytochrome c AMD12_RS04200 PF01926 50S ribosome-binding GTPase AMD12_RS04205 PF10996 Beta-Casp domain AMD12_RS04205 PF00753 Metallo-beta-lactamase superfamily AMD12_RS04205 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMD12_RS04215 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMD12_RS04220 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS04220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS04220 PF00672 HAMP domain AMD12_RS04225 PF00072 Response regulator receiver domain AMD12_RS04225 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS04240 PF02583 Metal-sensitive transcriptional repressor AMD12_RS04245 PF00107 Zinc-binding dehydrogenase AMD12_RS04245 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS04250 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMD12_RS04255 PF00756 Putative esterase AMD12_RS04265 PF00155 Aminotransferase class I and II AMD12_RS04265 PF00392 Bacterial regulatory proteins, gntR family AMD12_RS04270 PF02567 Phenazine biosynthesis-like protein AMD12_RS04275 PF00892 EamA-like transporter family AMD12_RS04285 PF12848 ABC transporter AMD12_RS04285 PF00005 ABC transporter AMD12_RS04295 PF00464 Serine hydroxymethyltransferase AMD12_RS04300 PF03477 ATP cone domain AMD12_RS04310 PF01872 RibD C-terminal domain AMD12_RS04310 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD12_RS04320 PF00677 Lumazine binding domain AMD12_RS04325 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMD12_RS04325 PF00925 GTP cyclohydrolase II AMD12_RS04330 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMD12_RS04335 PF01029 NusB family AMD12_RS04340 PF02769 AIR synthase related protein, C-terminal domain AMD12_RS04340 PF00586 AIR synthase related protein, N-terminal domain AMD12_RS04360 PF03814 Potassium-transporting ATPase A subunit AMD12_RS04370 PF02669 K+-transporting ATPase, c chain AMD12_RS04375 PF13492 GAF domain AMD12_RS04375 PF13493 Domain of unknown function (DUF4118) AMD12_RS04375 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD12_RS04375 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS04375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS04380 PF00072 Response regulator receiver domain AMD12_RS04380 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS04395 PF01565 FAD binding domain AMD12_RS04395 PF02913 FAD linked oxidases, C-terminal domain AMD12_RS04400 PF04307 LexA-binding, inner membrane-associated putative hydrolase AMD12_RS04405 PF02021 Uncharacterised protein family UPF0102 AMD12_RS04415 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD12_RS04430 PF02381 MraZ protein, putative antitoxin-like AMD12_RS04435 PF01795 MraW methylase family AMD12_RS04440 PF04999 Cell division protein FtsL AMD12_RS04445 PF03717 Penicillin-binding Protein dimerisation domain AMD12_RS04445 PF00905 Penicillin binding protein transpeptidase domain AMD12_RS04450 PF08245 Mur ligase middle domain AMD12_RS04450 PF01225 Mur ligase family, catalytic domain AMD12_RS04450 PF02875 Mur ligase family, glutamate ligase domain AMD12_RS04455 PF02875 Mur ligase family, glutamate ligase domain AMD12_RS04455 PF01225 Mur ligase family, catalytic domain AMD12_RS04455 PF08245 Mur ligase middle domain AMD12_RS04460 PF00953 Glycosyl transferase family 4 AMD12_RS04465 PF01098 Cell cycle protein AMD12_RS04470 PF04101 Glycosyltransferase family 28 C-terminal domain AMD12_RS04470 PF03033 Glycosyltransferase family 28 N-terminal domain AMD12_RS04475 PF01225 Mur ligase family, catalytic domain AMD12_RS04475 PF02875 Mur ligase family, glutamate ligase domain AMD12_RS04475 PF08245 Mur ligase middle domain AMD12_RS04480 PF01820 D-ala D-ala ligase N-terminus AMD12_RS04480 PF07478 D-ala D-ala ligase C-terminus AMD12_RS04485 PF03799 Cell division protein FtsQ AMD12_RS04485 PF08478 POTRA domain, FtsQ-type AMD12_RS04490 PF02491 SHS2 domain inserted in FTSA AMD12_RS04495 PF12327 FtsZ family, C-terminal domain AMD12_RS04495 PF00091 Tubulin/FtsZ family, GTPase domain AMD12_RS04500 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMD12_RS04510 PF01476 LysM domain AMD12_RS04510 PF08525 Opacity-associated protein A N-terminal motif AMD12_RS04510 PF01551 Peptidase family M23 AMD12_RS04515 PF02810 SEC-C motif AMD12_RS04515 PF07517 SecA DEAD-like domain AMD12_RS04515 PF01043 SecA preprotein cross-linking domain AMD12_RS04515 PF07516 SecA Wing and Scaffold domain AMD12_RS04520 PF00293 NUDIX domain AMD12_RS04530 PF02219 Methylenetetrahydrofolate reductase AMD12_RS04540 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS04540 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD12_RS04540 PF00698 Acyl transferase domain AMD12_RS04540 PF08659 KR domain AMD12_RS04540 PF00550 Phosphopantetheine attachment site AMD12_RS04540 PF16197 Ketoacyl-synthetase C-terminal extension AMD12_RS04540 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD12_RS04540 PF14765 Polyketide synthase dehydratase AMD12_RS04540 PF00107 Zinc-binding dehydrogenase AMD12_RS04545 PF00082 Subtilase family AMD12_RS04545 PF09286 Pro-kumamolisin, activation domain AMD12_RS04555 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD12_RS04560 PF00128 Alpha amylase, catalytic domain AMD12_RS04590 PF13649 Methyltransferase domain AMD12_RS04595 PF05221 S-adenosyl-L-homocysteine hydrolase AMD12_RS04595 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD12_RS04605 PF00311 Phosphoenolpyruvate carboxylase AMD12_RS04635 PF00328 Histidine phosphatase superfamily (branch 2) AMD12_RS04640 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMD12_RS04640 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMD12_RS04640 PF02772 S-adenosylmethionine synthetase, central domain AMD12_RS04650 PF13649 Methyltransferase domain AMD12_RS04655 PF01207 Dihydrouridine synthase (Dus) AMD12_RS04665 PF00294 pfkB family carbohydrate kinase AMD12_RS04670 PF01773 Na+ dependent nucleoside transporter N-terminus AMD12_RS04670 PF07670 Nucleoside recognition AMD12_RS04670 PF07662 Na+ dependent nucleoside transporter C-terminus AMD12_RS04675 PF00248 Aldo/keto reductase family AMD12_RS04685 PF00593 TonB dependent receptor AMD12_RS04685 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS04705 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS04710 PF00005 ABC transporter AMD12_RS04720 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMD12_RS04730 PF00005 ABC transporter AMD12_RS04735 PF13472 GDSL-like Lipase/Acylhydrolase family AMD12_RS04740 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS04740 PF00072 Response regulator receiver domain AMD12_RS04745 PF08521 Two-component sensor kinase N-terminal AMD12_RS04745 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS04745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS04755 PF01219 Prokaryotic diacylglycerol kinase AMD12_RS04775 PF01790 Prolipoprotein diacylglyceryl transferase AMD12_RS04780 PF00303 Thymidylate synthase AMD12_RS04790 PF00186 Dihydrofolate reductase AMD12_RS04795 PF00158 Sigma-54 interaction domain AMD12_RS04800 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD12_RS04800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD12_RS04805 PF00005 ABC transporter AMD12_RS04810 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS04820 PF00296 Luciferase-like monooxygenase AMD12_RS04825 PF03358 NADPH-dependent FMN reductase AMD12_RS04845 PF00296 Luciferase-like monooxygenase AMD12_RS04850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMD12_RS04855 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS04860 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS04860 PF12911 N-terminal TM domain of oligopeptide transport permease C AMD12_RS04865 PF00005 ABC transporter AMD12_RS04865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMD12_RS04870 PF00149 Calcineurin-like phosphoesterase AMD12_RS04875 PF04379 ApaG domain AMD12_RS04880 PF00398 Ribosomal RNA adenine dimethylase AMD12_RS04885 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMD12_RS04890 PF00639 PPIC-type PPIASE domain AMD12_RS04890 PF09312 SurA N-terminal domain AMD12_RS04895 PF04453 LPS transport system D AMD12_RS04895 PF03968 OstA-like protein AMD12_RS04905 PF00850 Histone deacetylase domain AMD12_RS04910 PF01923 Cobalamin adenosyltransferase AMD12_RS04920 PF01494 FAD binding domain AMD12_RS04925 PF01494 FAD binding domain AMD12_RS04945 PF07729 FCD domain AMD12_RS04945 PF00392 Bacterial regulatory proteins, gntR family AMD12_RS04950 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD12_RS04955 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD12_RS04955 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AMD12_RS04960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS04960 PF03466 LysR substrate binding domain AMD12_RS04965 PF00501 AMP-binding enzyme AMD12_RS04965 PF13193 AMP-binding enzyme C-terminal domain AMD12_RS04970 PF00171 Aldehyde dehydrogenase family AMD12_RS04975 PF00378 Enoyl-CoA hydratase/isomerase AMD12_RS04995 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD12_RS05000 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD12_RS05000 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD12_RS05005 PF18125 RlmM ferredoxin-like domain AMD12_RS05005 PF01728 FtsJ-like methyltransferase AMD12_RS05030 PF00892 EamA-like transporter family AMD12_RS05040 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMD12_RS05040 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD12_RS05055 PF00072 Response regulator receiver domain AMD12_RS05055 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS05060 PF00672 HAMP domain AMD12_RS05060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS05060 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS05060 PF01627 Hpt domain AMD12_RS05060 PF00072 Response regulator receiver domain AMD12_RS05060 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD12_RS05065 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS05065 PF00072 Response regulator receiver domain AMD12_RS05075 PF01625 Peptide methionine sulfoxide reductase AMD12_RS05085 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMD12_RS05090 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD12_RS05090 PF14760 Rnk N-terminus AMD12_RS05095 PF03466 LysR substrate binding domain AMD12_RS05095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS05100 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD12_RS05100 PF13192 Thioredoxin domain AMD12_RS05105 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMD12_RS05105 PF00578 AhpC/TSA family AMD12_RS05110 PF17827 PrmC N-terminal domain AMD12_RS05110 PF05175 Methyltransferase small domain AMD12_RS05115 PF00561 alpha/beta hydrolase fold AMD12_RS05125 PF00293 NUDIX domain AMD12_RS05130 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD12_RS05130 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD12_RS05130 PF00476 DNA polymerase family A AMD12_RS05130 PF01612 3'-5' exonuclease AMD12_RS05160 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMD12_RS05160 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMD12_RS05160 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMD12_RS05185 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMD12_RS05190 PF02233 NAD(P) transhydrogenase beta subunit AMD12_RS05205 PF01063 Amino-transferase class IV AMD12_RS05210 PF04151 Bacterial pre-peptidase C-terminal domain AMD12_RS05210 PF00082 Subtilase family AMD12_RS05220 PF04151 Bacterial pre-peptidase C-terminal domain AMD12_RS05220 PF00082 Subtilase family AMD12_RS05225 PF04073 Aminoacyl-tRNA editing domain AMD12_RS05245 PF03358 NADPH-dependent FMN reductase AMD12_RS05250 PF03631 Virulence factor BrkB AMD12_RS05255 PF08534 Redoxin AMD12_RS05270 PF03976 Polyphosphate kinase 2 (PPK2) AMD12_RS05275 PF00994 Probable molybdopterin binding domain AMD12_RS05285 PF03462 PCRF domain AMD12_RS05285 PF00472 RF-1 domain AMD12_RS05300 PF03550 Outer membrane lipoprotein LolB AMD12_RS05305 PF08544 GHMP kinases C terminal AMD12_RS05305 PF00288 GHMP kinases N terminal domain AMD12_RS05315 PF14572 Phosphoribosyl synthetase-associated domain AMD12_RS05315 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMD12_RS05320 PF01386 Ribosomal L25p family AMD12_RS05320 PF14693 Ribosomal protein TL5, C-terminal domain AMD12_RS05325 PF01195 Peptidyl-tRNA hydrolase AMD12_RS05330 PF06071 Protein of unknown function (DUF933) AMD12_RS05330 PF01926 50S ribosome-binding GTPase AMD12_RS05350 PF03144 Elongation factor Tu domain 2 AMD12_RS05350 PF00009 Elongation factor Tu GTP binding domain AMD12_RS05350 PF03143 Elongation factor Tu C-terminal domain AMD12_RS05360 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMD12_RS05365 PF00467 KOW motif AMD12_RS05365 PF02357 Transcription termination factor nusG AMD12_RS05370 PF03946 Ribosomal protein L11, N-terminal domain AMD12_RS05370 PF00298 Ribosomal protein L11, RNA binding domain AMD12_RS05375 PF00687 Ribosomal protein L1p/L10e family AMD12_RS05380 PF00466 Ribosomal protein L10 AMD12_RS05385 PF16320 Ribosomal protein L7/L12 dimerisation domain AMD12_RS05385 PF00542 Ribosomal protein L7/L12 C-terminal domain AMD12_RS05390 PF10385 RNA polymerase beta subunit external 1 domain AMD12_RS05390 PF00562 RNA polymerase Rpb2, domain 6 AMD12_RS05390 PF04560 RNA polymerase Rpb2, domain 7 AMD12_RS05390 PF04565 RNA polymerase Rpb2, domain 3 AMD12_RS05390 PF04563 RNA polymerase beta subunit AMD12_RS05390 PF04561 RNA polymerase Rpb2, domain 2 AMD12_RS05395 PF05000 RNA polymerase Rpb1, domain 4 AMD12_RS05395 PF04997 RNA polymerase Rpb1, domain 1 AMD12_RS05395 PF00623 RNA polymerase Rpb1, domain 2 AMD12_RS05395 PF04998 RNA polymerase Rpb1, domain 5 AMD12_RS05395 PF04983 RNA polymerase Rpb1, domain 3 AMD12_RS05400 PF00164 Ribosomal protein S12/S23 AMD12_RS05405 PF00177 Ribosomal protein S7p/S5e AMD12_RS05410 PF03144 Elongation factor Tu domain 2 AMD12_RS05410 PF00009 Elongation factor Tu GTP binding domain AMD12_RS05410 PF14492 Elongation Factor G, domain II AMD12_RS05410 PF03764 Elongation factor G, domain IV AMD12_RS05410 PF00679 Elongation factor G C-terminus AMD12_RS05415 PF03143 Elongation factor Tu C-terminal domain AMD12_RS05415 PF03144 Elongation factor Tu domain 2 AMD12_RS05415 PF00009 Elongation factor Tu GTP binding domain AMD12_RS05420 PF00338 Ribosomal protein S10p/S20e AMD12_RS05425 PF00297 Ribosomal protein L3 AMD12_RS05430 PF00573 Ribosomal protein L4/L1 family AMD12_RS05435 PF00276 Ribosomal protein L23 AMD12_RS05440 PF03947 Ribosomal Proteins L2, C-terminal domain AMD12_RS05440 PF00181 Ribosomal Proteins L2, RNA binding domain AMD12_RS05445 PF00203 Ribosomal protein S19 AMD12_RS05450 PF00237 Ribosomal protein L22p/L17e AMD12_RS05455 PF07650 KH domain AMD12_RS05455 PF00189 Ribosomal protein S3, C-terminal domain AMD12_RS05460 PF00252 Ribosomal protein L16p/L10e AMD12_RS05465 PF00831 Ribosomal L29 protein AMD12_RS05470 PF00366 Ribosomal protein S17 AMD12_RS05475 PF00238 Ribosomal protein L14p/L23e AMD12_RS05480 PF00467 KOW motif AMD12_RS05480 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMD12_RS05485 PF00673 ribosomal L5P family C-terminus AMD12_RS05485 PF00281 Ribosomal protein L5 AMD12_RS05490 PF00253 Ribosomal protein S14p/S29e AMD12_RS05495 PF00410 Ribosomal protein S8 AMD12_RS05500 PF00347 Ribosomal protein L6 AMD12_RS05505 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMD12_RS05510 PF00333 Ribosomal protein S5, N-terminal domain AMD12_RS05510 PF03719 Ribosomal protein S5, C-terminal domain AMD12_RS05515 PF00327 Ribosomal protein L30p/L7e AMD12_RS05520 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMD12_RS05525 PF00344 SecY translocase AMD12_RS05530 PF00416 Ribosomal protein S13/S18 AMD12_RS05535 PF00411 Ribosomal protein S11 AMD12_RS05540 PF00163 Ribosomal protein S4/S9 N-terminal domain AMD12_RS05540 PF01479 S4 domain AMD12_RS05545 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMD12_RS05545 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMD12_RS05545 PF01000 RNA polymerase Rpb3/RpoA insert domain AMD12_RS05550 PF01196 Ribosomal protein L17 AMD12_RS05555 PF02600 Disulfide bond formation protein DsbB AMD12_RS05570 PF01474 Class-II DAHP synthetase family AMD12_RS05580 PF01425 Amidase AMD12_RS05590 PF00679 Elongation factor G C-terminus AMD12_RS05590 PF03144 Elongation factor Tu domain 2 AMD12_RS05590 PF00009 Elongation factor Tu GTP binding domain AMD12_RS05595 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD12_RS05600 PF00056 lactate/malate dehydrogenase, NAD binding domain AMD12_RS05600 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMD12_RS05605 PF02798 Glutathione S-transferase, N-terminal domain AMD12_RS05605 PF00043 Glutathione S-transferase, C-terminal domain AMD12_RS05615 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD12_RS05615 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD12_RS05620 PF00107 Zinc-binding dehydrogenase AMD12_RS05620 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS05625 PF00691 OmpA family AMD12_RS05625 PF05736 OprF membrane domain AMD12_RS05635 PF00849 RNA pseudouridylate synthase AMD12_RS05645 PF00155 Aminotransferase class I and II AMD12_RS05655 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS05660 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS05665 PF12857 TOBE-like domain AMD12_RS05665 PF00005 ABC transporter AMD12_RS05665 PF17850 CysA C-terminal regulatory domain AMD12_RS05675 PF00107 Zinc-binding dehydrogenase AMD12_RS05675 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS05690 PF05506 Domain of unknown function (DUF756) AMD12_RS05690 PF04185 Phosphoesterase family AMD12_RS05695 PF10459 Peptidase S46 AMD12_RS05700 PF10459 Peptidase S46 AMD12_RS05705 PF00300 Histidine phosphatase superfamily (branch 1) AMD12_RS05710 PF08245 Mur ligase middle domain AMD12_RS05710 PF02875 Mur ligase family, glutamate ligase domain AMD12_RS05725 PF00156 Phosphoribosyl transferase domain AMD12_RS05730 PF04305 Protein of unknown function (DUF455) AMD12_RS05750 PF00149 Calcineurin-like phosphoesterase AMD12_RS05755 PF01569 PAP2 superfamily AMD12_RS05760 PF00534 Glycosyl transferases group 1 AMD12_RS05760 PF13439 Glycosyltransferase Family 4 AMD12_RS05765 PF02541 Ppx/GppA phosphatase family AMD12_RS05770 PF02503 Polyphosphate kinase middle domain AMD12_RS05770 PF13090 Polyphosphate kinase C-terminal domain 2 AMD12_RS05770 PF17941 Polyphosphate kinase C-terminal domain 1 AMD12_RS05770 PF13089 Polyphosphate kinase N-terminal domain AMD12_RS05775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS05775 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS05775 PF00989 PAS fold AMD12_RS05775 PF11808 Phosphate regulon sensor protein PhoR AMD12_RS05780 PF00072 Response regulator receiver domain AMD12_RS05780 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS05785 PF13181 Tetratricopeptide repeat AMD12_RS05785 PF01435 Peptidase family M48 AMD12_RS05790 PF00462 Glutaredoxin AMD12_RS05800 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD12_RS05955 PF05697 Bacterial trigger factor protein (TF) AMD12_RS05955 PF05698 Bacterial trigger factor protein (TF) C-terminus AMD12_RS05960 PF00574 Clp protease AMD12_RS05965 PF06689 ClpX C4-type zinc finger AMD12_RS05965 PF10431 C-terminal, D2-small domain, of ClpB protein AMD12_RS05965 PF07724 AAA domain (Cdc48 subfamily) AMD12_RS05970 PF05362 Lon protease (S16) C-terminal proteolytic domain AMD12_RS05970 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMD12_RS05970 PF00004 ATPase family associated with various cellular activities (AAA) AMD12_RS05975 PF00216 Bacterial DNA-binding protein AMD12_RS06000 PF01476 LysM domain AMD12_RS06000 PF05257 CHAP domain AMD12_RS06005 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMD12_RS06005 PF00753 Metallo-beta-lactamase superfamily AMD12_RS06015 PF00075 RNase H AMD12_RS06020 PF00929 Exonuclease AMD12_RS06040 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMD12_RS06050 PF00753 Metallo-beta-lactamase superfamily AMD12_RS06050 PF12706 Beta-lactamase superfamily domain AMD12_RS06055 PF06463 Molybdenum Cofactor Synthesis C AMD12_RS06055 PF04055 Radical SAM superfamily AMD12_RS06065 PF01967 MoaC family AMD12_RS06070 PF02597 ThiS family AMD12_RS06075 PF02391 MoaE protein AMD12_RS06125 PF12170 DNA polymerase III tau subunit V interacting with alpha AMD12_RS06125 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMD12_RS06125 PF12169 DNA polymerase III subunits gamma and tau domain III AMD12_RS06130 PF02575 YbaB/EbfC DNA-binding family AMD12_RS06135 PF13662 Toprim domain AMD12_RS06135 PF02132 RecR protein AMD12_RS06140 PF01230 HIT domain AMD12_RS06150 PF11992 Domain of unknown function (DUF3488) AMD12_RS06150 PF01841 Transglutaminase-like superfamily AMD12_RS06150 PF13559 Domain of unknown function (DUF4129) AMD12_RS06160 PF17863 AAA lid domain AMD12_RS06160 PF07726 ATPase family associated with various cellular activities (AAA) AMD12_RS06180 PF02545 Maf-like protein AMD12_RS06185 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMD12_RS06190 PF01783 Ribosomal L32p protein family AMD12_RS06195 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD12_RS06195 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD12_RS06205 PF00698 Acyl transferase domain AMD12_RS06215 PF00550 Phosphopantetheine attachment site AMD12_RS06220 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD12_RS06220 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD12_RS06225 PF04715 Anthranilate synthase component I, N terminal region AMD12_RS06225 PF00425 chorismate binding enzyme AMD12_RS06230 PF02618 YceG-like family AMD12_RS06235 PF09115 DNA polymerase III, delta subunit, C terminal AMD12_RS06255 PF06506 Propionate catabolism activator AMD12_RS06255 PF00158 Sigma-54 interaction domain AMD12_RS06255 PF02954 Bacterial regulatory protein, Fis family AMD12_RS06265 PF00285 Citrate synthase, C-terminal domain AMD12_RS06270 PF00694 Aconitase C-terminal domain AMD12_RS06270 PF00330 Aconitase family (aconitate hydratase) AMD12_RS06275 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AMD12_RS06280 PF04303 PrpF protein AMD12_RS06285 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS06285 PF00593 TonB dependent receptor AMD12_RS06295 PF01835 MG2 domain AMD12_RS06295 PF17962 Bacterial macroglobulin domain 6 AMD12_RS06295 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AMD12_RS06295 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AMD12_RS06295 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AMD12_RS06295 PF07703 Alpha-2-macroglobulin bait region domain AMD12_RS06295 PF00207 Alpha-2-macroglobulin family AMD12_RS06295 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AMD12_RS06310 PF06832 Penicillin-Binding Protein C-terminus Family AMD12_RS06310 PF00905 Penicillin binding protein transpeptidase domain AMD12_RS06310 PF00912 Transglycosylase AMD12_RS06320 PF08534 Redoxin AMD12_RS06330 PF00226 DnaJ domain AMD12_RS06330 PF01556 DnaJ C terminal domain AMD12_RS06335 PF00072 Response regulator receiver domain AMD12_RS06340 PF12221 Bacterial membrane protein N terminal AMD12_RS06340 PF01145 SPFH domain / Band 7 family AMD12_RS06345 PF01145 SPFH domain / Band 7 family AMD12_RS06355 PF00709 Adenylosuccinate synthetase AMD12_RS06360 PF11838 ERAP1-like C-terminal domain AMD12_RS06360 PF01433 Peptidase family M1 domain AMD12_RS06375 PF00440 Bacterial regulatory proteins, tetR family AMD12_RS06440 PF13456 Reverse transcriptase-like AMD12_RS06440 PF00300 Histidine phosphatase superfamily (branch 1) AMD12_RS06445 PF01256 Carbohydrate kinase AMD12_RS06455 PF00723 Glycosyl hydrolases family 15 AMD12_RS06465 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD12_RS06465 PF07971 Glycosyl hydrolase family 92 AMD12_RS06485 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD12_RS06505 PF17755 UvrA DNA-binding domain AMD12_RS06510 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD12_RS06510 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD12_RS06515 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD12_RS06515 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD12_RS06520 PF01799 [2Fe-2S] binding domain AMD12_RS06520 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD12_RS06555 PF00717 Peptidase S24-like AMD12_RS06555 PF01726 LexA DNA binding domain AMD12_RS06570 PF14579 Helix-hairpin-helix motif AMD12_RS06570 PF02811 PHP domain AMD12_RS06570 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD12_RS06570 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD12_RS06575 PF00326 Prolyl oligopeptidase family AMD12_RS06585 PF03169 OPT oligopeptide transporter protein AMD12_RS06600 PF07676 WD40-like Beta Propeller Repeat AMD12_RS06600 PF00326 Prolyl oligopeptidase family AMD12_RS06600 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD12_RS06615 PF12833 Helix-turn-helix domain AMD12_RS06615 PF02311 AraC-like ligand binding domain AMD12_RS06630 PF00199 Catalase AMD12_RS06630 PF06628 Catalase-related immune-responsive AMD12_RS06630 PF18011 C-terminal domain found in long catalases AMD12_RS06635 PF00248 Aldo/keto reductase family AMD12_RS06640 PF00135 Carboxylesterase family AMD12_RS06645 PF02347 Glycine cleavage system P-protein AMD12_RS06650 PF07690 Major Facilitator Superfamily AMD12_RS06665 PF00884 Sulfatase AMD12_RS06665 PF08019 Phosphoethanolamine transferase EptA/EptB AMD12_RS06680 PF00072 Response regulator receiver domain AMD12_RS06680 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS06685 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS06685 PF08521 Two-component sensor kinase N-terminal AMD12_RS06685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS06695 PF03776 Septum formation topological specificity factor MinE AMD12_RS06700 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD12_RS06705 PF03775 Septum formation inhibitor MinC, C-terminal domain AMD12_RS06705 PF05209 Septum formation inhibitor MinC, N-terminal domain AMD12_RS06720 PF07730 Histidine kinase AMD12_RS06725 PF00072 Response regulator receiver domain AMD12_RS06725 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS06740 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD12_RS06765 PF02222 ATP-grasp domain AMD12_RS06775 PF04376 Arginine-tRNA-protein transferase, N terminus AMD12_RS06775 PF04377 Arginine-tRNA-protein transferase, C terminus AMD12_RS06800 PF00378 Enoyl-CoA hydratase/isomerase AMD12_RS06815 PF17755 UvrA DNA-binding domain AMD12_RS06815 PF00005 ABC transporter AMD12_RS06815 PF17760 UvrA interaction domain AMD12_RS06820 PF00829 Ribosomal prokaryotic L21 protein AMD12_RS06825 PF01016 Ribosomal L27 protein AMD12_RS06830 PF01926 50S ribosome-binding GTPase AMD12_RS06830 PF01018 GTP1/OBG AMD12_RS06835 PF01649 Ribosomal protein S20 AMD12_RS06840 PF03023 Lipid II flippase MurJ AMD12_RS06845 PF01687 Riboflavin kinase AMD12_RS06845 PF06574 FAD synthetase AMD12_RS06850 PF08264 Anticodon-binding domain of tRNA AMD12_RS06850 PF00133 tRNA synthetases class I (I, L, M and V) AMD12_RS06850 PF06827 Zinc finger found in FPG and IleRS AMD12_RS06855 PF01252 Signal peptidase (SPase) II AMD12_RS06860 PF02401 LytB protein AMD12_RS06875 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD12_RS06880 PF00510 Cytochrome c oxidase subunit III AMD12_RS06885 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMD12_RS06895 PF18073 Rubredoxin metal binding domain AMD12_RS06900 PF05656 Protein of unknown function (DUF805) AMD12_RS06910 PF12833 Helix-turn-helix domain AMD12_RS06915 PF00183 Hsp90 protein AMD12_RS06915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS06925 PF08678 Rsbr N terminal AMD12_RS06925 PF01740 STAS domain AMD12_RS06930 PF01740 STAS domain AMD12_RS06935 PF13581 Histidine kinase-like ATPase domain AMD12_RS06945 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD12_RS06945 PF00672 HAMP domain AMD12_RS06945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS06945 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS06945 PF01627 Hpt domain AMD12_RS06945 PF00072 Response regulator receiver domain AMD12_RS06950 PF08448 PAS fold AMD12_RS06950 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS06950 PF13188 PAS domain AMD12_RS06950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS06950 PF00072 Response regulator receiver domain AMD12_RS06955 PF04616 Glycosyl hydrolases family 43 AMD12_RS06955 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD12_RS06960 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS06960 PF00593 TonB dependent receptor AMD12_RS06965 PF00085 Thioredoxin AMD12_RS06970 PF07237 Protein of unknown function (DUF1428) AMD12_RS06975 PF13492 GAF domain AMD12_RS06975 PF13493 Domain of unknown function (DUF4118) AMD12_RS06975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS06975 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD12_RS06975 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS06980 PF01339 CheB methylesterase AMD12_RS06985 PF01739 CheR methyltransferase, SAM binding domain AMD12_RS06985 PF03705 CheR methyltransferase, all-alpha domain AMD12_RS06990 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD12_RS06990 PF00072 Response regulator receiver domain AMD12_RS06990 PF00672 HAMP domain AMD12_RS06990 PF01627 Hpt domain AMD12_RS06990 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS06990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS06995 PF13426 PAS domain AMD12_RS06995 PF00072 Response regulator receiver domain AMD12_RS06995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS07000 PF00072 Response regulator receiver domain AMD12_RS07005 PF00722 Glycosyl hydrolases family 16 AMD12_RS07010 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AMD12_RS07020 PF01263 Aldose 1-epimerase AMD12_RS07025 PF01578 Cytochrome C assembly protein AMD12_RS07030 PF02881 SRP54-type protein, helical bundle domain AMD12_RS07030 PF00448 SRP54-type protein, GTPase domain AMD12_RS07030 PF02978 Signal peptide binding domain AMD12_RS07035 PF03060 Nitronate monooxygenase AMD12_RS07040 PF01063 Amino-transferase class IV AMD12_RS07045 PF00886 Ribosomal protein S16 AMD12_RS07050 PF05239 PRC-barrel domain AMD12_RS07050 PF01782 RimM N-terminal domain AMD12_RS07055 PF01746 tRNA (Guanine-1)-methyltransferase AMD12_RS07060 PF01245 Ribosomal protein L19 AMD12_RS07085 PF01479 S4 domain AMD12_RS07090 PF00141 Peroxidase AMD12_RS07100 PF01624 MutS domain I AMD12_RS07100 PF05188 MutS domain II AMD12_RS07100 PF05192 MutS domain III AMD12_RS07100 PF00488 MutS domain V AMD12_RS07100 PF05190 MutS family domain IV AMD12_RS07110 PF03527 RHS protein AMD12_RS07110 PF05593 RHS Repeat AMD12_RS07130 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD12_RS07130 PF00703 Glycosyl hydrolases family 2 AMD12_RS07130 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMD12_RS07130 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD12_RS07130 PF16355 Domain of unknown function (DUF4982) AMD12_RS07135 PF07745 Glycosyl hydrolase family 53 AMD12_RS07145 PF09856 Predicted transcriptional regulator (DUF2083) AMD12_RS07145 PF06114 IrrE N-terminal-like domain AMD12_RS07145 PF01381 Helix-turn-helix AMD12_RS07150 PF00171 Aldehyde dehydrogenase family AMD12_RS07155 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD12_RS07155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD12_RS07155 PF02770 Acyl-CoA dehydrogenase, middle domain AMD12_RS07160 PF00378 Enoyl-CoA hydratase/isomerase AMD12_RS07165 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD12_RS07165 PF00378 Enoyl-CoA hydratase/isomerase AMD12_RS07165 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD12_RS07170 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD12_RS07170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD12_RS07175 PF01545 Cation efflux family AMD12_RS07180 PF00378 Enoyl-CoA hydratase/isomerase AMD12_RS07180 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD12_RS07180 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD12_RS07185 PF04542 Sigma-70 region 2 AMD12_RS07185 PF08281 Sigma-70, region 4 AMD12_RS07195 PF13180 PDZ domain AMD12_RS07200 PF03144 Elongation factor Tu domain 2 AMD12_RS07200 PF00679 Elongation factor G C-terminus AMD12_RS07200 PF06421 GTP-binding protein LepA C-terminus AMD12_RS07200 PF00009 Elongation factor Tu GTP binding domain AMD12_RS07205 PF10502 Signal peptidase, peptidase S26 AMD12_RS07215 PF14622 Ribonuclease-III-like AMD12_RS07215 PF00035 Double-stranded RNA binding motif AMD12_RS07220 PF01926 50S ribosome-binding GTPase AMD12_RS07220 PF07650 KH domain AMD12_RS07225 PF02565 Recombination protein O C terminal AMD12_RS07225 PF11967 Recombination protein O N terminal AMD12_RS07235 PF05958 tRNA (Uracil-5-)-methyltransferase AMD12_RS07240 PF01928 CYTH domain AMD12_RS07245 PF01323 DSBA-like thioredoxin domain AMD12_RS07250 PF01593 Flavin containing amine oxidoreductase AMD12_RS07255 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AMD12_RS07260 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD12_RS07265 PF00156 Phosphoribosyl transferase domain AMD12_RS07270 PF01048 Phosphorylase superfamily AMD12_RS07275 PF00313 'Cold-shock' DNA-binding domain AMD12_RS07280 PF01494 FAD binding domain AMD12_RS07290 PF00270 DEAD/DEAH box helicase AMD12_RS07290 PF08494 DEAD/H associated AMD12_RS07290 PF00271 Helicase conserved C-terminal domain AMD12_RS07295 PF04675 DNA ligase N terminus AMD12_RS07295 PF01068 ATP dependent DNA ligase domain AMD12_RS07295 PF04679 ATP dependent DNA ligase C terminal region AMD12_RS07305 PF01068 ATP dependent DNA ligase domain AMD12_RS07305 PF04679 ATP dependent DNA ligase C terminal region AMD12_RS07305 PF04675 DNA ligase N terminus AMD12_RS07320 PF00072 Response regulator receiver domain AMD12_RS07320 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS07335 PF00108 Thiolase, N-terminal domain AMD12_RS07335 PF02803 Thiolase, C-terminal domain AMD12_RS07340 PF00082 Subtilase family AMD12_RS07340 PF12951 Passenger-associated-transport-repeat AMD12_RS07340 PF03797 Autotransporter beta-domain AMD12_RS07345 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD12_RS07345 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMD12_RS07355 PF01863 Protein of unknown function DUF45 AMD12_RS07360 PF07043 Protein of unknown function (DUF1328) AMD12_RS07370 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD12_RS07395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD12_RS07405 PF03831 PhnA domain AMD12_RS07405 PF08274 PhnA Zinc-Ribbon AMD12_RS07410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD12_RS07415 PF07690 Major Facilitator Superfamily AMD12_RS07450 PF09924 Uncharacterised conserved protein (DUF2156) AMD12_RS07450 PF03706 Lysylphosphatidylglycerol synthase TM region AMD12_RS07460 PF01042 Endoribonuclease L-PSP AMD12_RS07505 PF04545 Sigma-70, region 4 AMD12_RS07505 PF04542 Sigma-70 region 2 AMD12_RS07525 PF04060 Putative Fe-S cluster AMD12_RS07535 PF01588 Putative tRNA binding domain AMD12_RS07535 PF09334 tRNA synthetases class I (M) AMD12_RS07550 PF00005 ABC transporter AMD12_RS07550 PF13732 Domain of unknown function (DUF4162) AMD12_RS07555 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD12_RS07560 PF00324 Amino acid permease AMD12_RS07565 PF02574 Homocysteine S-methyltransferase AMD12_RS07575 PF02592 Putative vitamin uptake transporter AMD12_RS07595 PF03551 Transcriptional regulator PadR-like family AMD12_RS07615 PF03653 Uncharacterised protein family (UPF0093) AMD12_RS07630 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMD12_RS07635 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD12_RS07635 PF02811 PHP domain AMD12_RS07635 PF14579 Helix-hairpin-helix motif AMD12_RS07635 PF01336 OB-fold nucleic acid binding domain AMD12_RS07635 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD12_RS07640 PF01351 Ribonuclease HII AMD12_RS07645 PF02684 Lipid-A-disaccharide synthetase AMD12_RS07650 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMD12_RS07650 PF00132 Bacterial transferase hexapeptide (six repeats) AMD12_RS07655 PF07977 FabA-like domain AMD12_RS07660 PF00132 Bacterial transferase hexapeptide (six repeats) AMD12_RS07660 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMD12_RS07670 PF01103 Surface antigen AMD12_RS07670 PF07244 Surface antigen variable number repeat AMD12_RS07675 PF17820 PDZ domain AMD12_RS07675 PF02163 Peptidase family M50 AMD12_RS07680 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMD12_RS07680 PF13288 DXP reductoisomerase C-terminal domain AMD12_RS07680 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMD12_RS07690 PF01255 Putative undecaprenyl diphosphate synthase AMD12_RS07695 PF01765 Ribosome recycling factor AMD12_RS07700 PF00696 Amino acid kinase family AMD12_RS07705 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS07705 PF00072 Response regulator receiver domain AMD12_RS07710 PF00889 Elongation factor TS AMD12_RS07715 PF00318 Ribosomal protein S2 AMD12_RS07750 PF00557 Metallopeptidase family M24 AMD12_RS07755 PF01909 Nucleotidyltransferase domain AMD12_RS07755 PF08335 GlnD PII-uridylyltransferase AMD12_RS07755 PF01966 HD domain AMD12_RS07760 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMD12_RS07760 PF00132 Bacterial transferase hexapeptide (six repeats) AMD12_RS07760 PF14602 Hexapeptide repeat of succinyl-transferase AMD12_RS07765 PF03960 ArsC family AMD12_RS07770 PF01546 Peptidase family M20/M25/M40 AMD12_RS07770 PF07687 Peptidase dimerisation domain AMD12_RS07775 PF00733 Asparagine synthase AMD12_RS07775 PF13537 Glutamine amidotransferase domain AMD12_RS07785 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS07785 PF00593 TonB dependent receptor AMD12_RS07800 PF00210 Ferritin-like domain AMD12_RS07805 PF05724 Thiopurine S-methyltransferase (TPMT) AMD12_RS07815 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD12_RS07815 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD12_RS07830 PF02321 Outer membrane efflux protein AMD12_RS07835 PF00529 HlyD membrane-fusion protein of T1SS AMD12_RS07835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD12_RS07840 PF07690 Major Facilitator Superfamily AMD12_RS07850 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD12_RS07850 PF14310 Fibronectin type III-like domain AMD12_RS07850 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD12_RS07860 PF00854 POT family AMD12_RS07885 PF12802 MarR family AMD12_RS07890 PF01432 Peptidase family M3 AMD12_RS07895 PF00255 Glutathione peroxidase AMD12_RS07900 PF00175 Oxidoreductase NAD-binding domain AMD12_RS07900 PF00970 Oxidoreductase FAD-binding domain AMD12_RS07905 PF00005 ABC transporter AMD12_RS07910 PF05681 Fumarate hydratase (Fumerase) AMD12_RS07910 PF05683 Fumarase C-terminus AMD12_RS07920 PF00484 Carbonic anhydrase AMD12_RS07925 PF02253 Phospholipase A1 AMD12_RS07935 PF00313 'Cold-shock' DNA-binding domain AMD12_RS07950 PF00899 ThiF family AMD12_RS07970 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD12_RS07970 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD12_RS07970 PF02770 Acyl-CoA dehydrogenase, middle domain AMD12_RS07980 PF00043 Glutathione S-transferase, C-terminal domain AMD12_RS07980 PF02798 Glutathione S-transferase, N-terminal domain AMD12_RS07990 PF13537 Glutamine amidotransferase domain AMD12_RS07990 PF00733 Asparagine synthase AMD12_RS07995 PF03358 NADPH-dependent FMN reductase AMD12_RS08000 PF03796 DnaB-like helicase C terminal domain AMD12_RS08000 PF00772 DnaB-like helicase N terminal domain AMD12_RS08005 PF03441 FAD binding domain of DNA photolyase AMD12_RS08005 PF00875 DNA photolyase AMD12_RS08010 PF00691 OmpA family AMD12_RS08010 PF05736 OprF membrane domain AMD12_RS08015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS08015 PF03466 LysR substrate binding domain AMD12_RS08030 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD12_RS08030 PF00529 HlyD membrane-fusion protein of T1SS AMD12_RS08035 PF00873 AcrB/AcrD/AcrF family AMD12_RS08040 PF00106 short chain dehydrogenase AMD12_RS08045 PF02321 Outer membrane efflux protein AMD12_RS08050 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS08060 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS08160 PF00082 Subtilase family AMD12_RS08165 PF01668 SmpB protein AMD12_RS08170 PF03364 Polyketide cyclase / dehydrase and lipid transport AMD12_RS08175 PF03658 RnfH family Ubiquitin AMD12_RS08180 PF04355 SmpA / OmlA family AMD12_RS08185 PF01475 Ferric uptake regulator family AMD12_RS08190 PF02463 RecF/RecN/SMC N terminal domain AMD12_RS08195 PF01628 HrcA protein C terminal domain AMD12_RS08195 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AMD12_RS08200 PF01025 GrpE AMD12_RS08205 PF00012 Hsp70 protein AMD12_RS08210 PF00226 DnaJ domain AMD12_RS08210 PF01556 DnaJ C terminal domain AMD12_RS08210 PF00684 DnaJ central domain AMD12_RS08215 PF08543 Phosphomethylpyrimidine kinase AMD12_RS08240 PF00664 ABC transporter transmembrane region AMD12_RS08240 PF03412 Peptidase C39 family AMD12_RS08240 PF00005 ABC transporter AMD12_RS08245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS08245 PF03466 LysR substrate binding domain AMD12_RS08250 PF00664 ABC transporter transmembrane region AMD12_RS08250 PF00005 ABC transporter AMD12_RS08255 PF01205 Uncharacterized protein family UPF0029 AMD12_RS08260 PF03641 Possible lysine decarboxylase AMD12_RS08265 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD12_RS08265 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD12_RS08270 PF02817 e3 binding domain AMD12_RS08270 PF00364 Biotin-requiring enzyme AMD12_RS08270 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD12_RS08275 PF00676 Dehydrogenase E1 component AMD12_RS08275 PF02779 Transketolase, pyrimidine binding domain AMD12_RS08275 PF16078 2-oxoglutarate dehydrogenase N-terminus AMD12_RS08275 PF16870 2-oxoglutarate dehydrogenase C-terminal AMD12_RS08285 PF08007 Cupin superfamily protein AMD12_RS08295 PF00206 Lyase AMD12_RS08295 PF08328 Adenylosuccinate lyase C-terminal AMD12_RS08305 PF01595 Cyclin M transmembrane N-terminal domain AMD12_RS08305 PF00571 CBS domain AMD12_RS08305 PF03471 Transporter associated domain AMD12_RS08310 PF00206 Lyase AMD12_RS08310 PF10415 Fumarase C C-terminus AMD12_RS08335 PF00005 ABC transporter AMD12_RS08340 PF00392 Bacterial regulatory proteins, gntR family AMD12_RS08345 PF00255 Glutathione peroxidase AMD12_RS08350 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD12_RS08350 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD12_RS08355 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD12_RS08355 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD12_RS08355 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD12_RS08360 PF04102 SlyX AMD12_RS08375 PF00356 Bacterial regulatory proteins, lacI family AMD12_RS08380 PF07690 Major Facilitator Superfamily AMD12_RS08385 PF00294 pfkB family carbohydrate kinase AMD12_RS08395 PF02310 B12 binding domain AMD12_RS08395 PF02574 Homocysteine S-methyltransferase AMD12_RS08395 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMD12_RS08395 PF02607 B12 binding domain AMD12_RS08395 PF00809 Pterin binding enzyme AMD12_RS08400 PF00809 Pterin binding enzyme AMD12_RS08400 PF02574 Homocysteine S-methyltransferase AMD12_RS08405 PF01209 ubiE/COQ5 methyltransferase family AMD12_RS08410 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD12_RS08410 PF02770 Acyl-CoA dehydrogenase, middle domain AMD12_RS08410 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD12_RS08425 PF17876 Cold shock domain AMD12_RS08425 PF00575 S1 RNA binding domain AMD12_RS08425 PF08461 Ribonuclease R winged-helix domain AMD12_RS08425 PF00773 RNB domain AMD12_RS08425 PF08206 Ribonuclease B OB domain AMD12_RS08435 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD12_RS08435 PF00588 SpoU rRNA Methylase family AMD12_RS08440 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS08445 PF00929 Exonuclease AMD12_RS08455 PF01895 PhoU domain AMD12_RS08460 PF00005 ABC transporter AMD12_RS08465 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS08470 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS08475 PF12849 PBP superfamily domain AMD12_RS08480 PF12849 PBP superfamily domain AMD12_RS08495 PF00484 Carbonic anhydrase AMD12_RS08500 PF00916 Sulfate permease family AMD12_RS08500 PF01740 STAS domain AMD12_RS08505 PF10576 Iron-sulfur binding domain of endonuclease III AMD12_RS08505 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD12_RS08505 PF00633 Helix-hairpin-helix motif AMD12_RS08515 PF00378 Enoyl-CoA hydratase/isomerase AMD12_RS08520 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD12_RS08520 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD12_RS08525 PF00293 NUDIX domain AMD12_RS08530 PF00581 Rhodanese-like domain AMD12_RS08560 PF00005 ABC transporter AMD12_RS08560 PF16326 ABC transporter C-terminal domain AMD12_RS08560 PF12848 ABC transporter AMD12_RS08565 PF02926 THUMP domain AMD12_RS08565 PF01170 Putative RNA methylase family UPF0020 AMD12_RS08565 PF10672 S-adenosylmethionine-dependent methyltransferase AMD12_RS08570 PF01513 ATP-NAD kinase AMD12_RS08595 PF00929 Exonuclease AMD12_RS08595 PF08411 Exonuclease C-terminal AMD12_RS08600 PF01494 FAD binding domain AMD12_RS08605 PF00266 Aminotransferase class-V AMD12_RS08615 PF06052 3-hydroxyanthranilic acid dioxygenase AMD12_RS08620 PF00484 Carbonic anhydrase AMD12_RS08665 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS08665 PF00072 Response regulator receiver domain AMD12_RS08680 PF04299 Putative FMN-binding domain AMD12_RS08700 PF01336 OB-fold nucleic acid binding domain AMD12_RS08700 PF00152 tRNA synthetases class II (D, K and N) AMD12_RS08705 PF01521 Iron-sulphur cluster biosynthesis AMD12_RS08710 PF01250 Ribosomal protein S6 AMD12_RS08715 PF01084 Ribosomal protein S18 AMD12_RS08720 PF03948 Ribosomal protein L9, C-terminal domain AMD12_RS08720 PF01281 Ribosomal protein L9, N-terminal domain AMD12_RS08725 PF02463 RecF/RecN/SMC N terminal domain AMD12_RS08730 PF04354 ZipA, C-terminal FtsZ-binding domain AMD12_RS08740 PF00155 Aminotransferase class I and II AMD12_RS08745 PF03120 NAD-dependent DNA ligase OB-fold domain AMD12_RS08745 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMD12_RS08745 PF01653 NAD-dependent DNA ligase adenylation domain AMD12_RS08745 PF00533 BRCA1 C Terminus (BRCT) domain AMD12_RS08745 PF12826 Helix-hairpin-helix motif AMD12_RS08750 PF00152 tRNA synthetases class II (D, K and N) AMD12_RS08760 PF01008 Initiation factor 2 subunit family AMD12_RS08765 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD12_RS08765 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD12_RS08780 PF17391 Urocanase N-terminal domain AMD12_RS08780 PF01175 Urocanase Rossmann-like domain AMD12_RS08780 PF17392 Urocanase C-terminal domain AMD12_RS08790 PF00221 Aromatic amino acid lyase AMD12_RS08795 PF07969 Amidohydrolase family AMD12_RS08810 PF07702 UTRA domain AMD12_RS08810 PF00392 Bacterial regulatory proteins, gntR family AMD12_RS08840 PF01794 Ferric reductase like transmembrane component AMD12_RS08845 PF00174 Oxidoreductase molybdopterin binding domain AMD12_RS08850 PF00266 Aminotransferase class-V AMD12_RS08855 PF01817 Chorismate mutase type II AMD12_RS08855 PF00800 Prephenate dehydratase AMD12_RS08855 PF01842 ACT domain AMD12_RS08860 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD12_RS08870 PF03544 Gram-negative bacterial TonB protein C-terminal AMD12_RS08875 PF02403 Seryl-tRNA synthetase N-terminal domain AMD12_RS08875 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD12_RS08880 PF02525 Flavodoxin-like fold AMD12_RS08885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS08885 PF03466 LysR substrate binding domain AMD12_RS08940 PF02203 Tar ligand binding domain homologue AMD12_RS08940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS08940 PF00672 HAMP domain AMD12_RS08945 PF01494 FAD binding domain AMD12_RS08965 PF08448 PAS fold AMD12_RS08965 PF00072 Response regulator receiver domain AMD12_RS08965 PF13188 PAS domain AMD12_RS08965 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS08965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS08970 PF00672 HAMP domain AMD12_RS08970 PF00072 Response regulator receiver domain AMD12_RS08970 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS08970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS08970 PF01627 Hpt domain AMD12_RS08970 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD12_RS08975 PF06745 KaiC AMD12_RS08980 PF13426 PAS domain AMD12_RS08980 PF00072 Response regulator receiver domain AMD12_RS08980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS08990 PF03918 Cytochrome C biogenesis protein AMD12_RS08995 PF08534 Redoxin AMD12_RS09000 PF01578 Cytochrome C assembly protein AMD12_RS09000 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMD12_RS09005 PF03100 CcmE AMD12_RS09015 PF01578 Cytochrome C assembly protein AMD12_RS09020 PF00082 Subtilase family AMD12_RS09030 PF08281 Sigma-70, region 4 AMD12_RS09030 PF04542 Sigma-70 region 2 AMD12_RS09045 PF00034 Cytochrome c AMD12_RS09060 PF05523 WxcM-like, C-terminal AMD12_RS09080 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD12_RS09085 PF01943 Polysaccharide biosynthesis protein AMD12_RS09090 PF00535 Glycosyl transferase family 2 AMD12_RS09105 PF08241 Methyltransferase domain AMD12_RS09125 PF13579 Glycosyl transferase 4-like domain AMD12_RS09125 PF00534 Glycosyl transferases group 1 AMD12_RS09140 PF00005 ABC transporter AMD12_RS09145 PF00664 ABC transporter transmembrane region AMD12_RS09145 PF00005 ABC transporter AMD12_RS09150 PF07690 Major Facilitator Superfamily AMD12_RS09155 PF00296 Luciferase-like monooxygenase AMD12_RS09170 PF00571 CBS domain AMD12_RS09170 PF03471 Transporter associated domain AMD12_RS09170 PF01595 Cyclin M transmembrane N-terminal domain AMD12_RS09180 PF01384 Phosphate transporter family AMD12_RS09195 PF01751 Toprim domain AMD12_RS09195 PF00986 DNA gyrase B subunit, carboxyl terminus AMD12_RS09195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS09195 PF00204 DNA gyrase B AMD12_RS09205 PF06418 CTP synthase N-terminus AMD12_RS09205 PF00117 Glutamine amidotransferase class-I AMD12_RS09210 PF00793 DAHP synthetase I family AMD12_RS09220 PF00113 Enolase, C-terminal TIM barrel domain AMD12_RS09220 PF03952 Enolase, N-terminal domain AMD12_RS09225 PF04977 Septum formation initiator AMD12_RS09230 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMD12_RS09235 PF02542 YgbB family AMD12_RS09240 PF01142 tRNA pseudouridine synthase D (TruD) AMD12_RS09245 PF01713 Smr domain AMD12_RS09250 PF01975 Survival protein SurE AMD12_RS09260 PF09335 SNARE associated Golgi protein AMD12_RS09265 PF01476 LysM domain AMD12_RS09265 PF01551 Peptidase family M23 AMD12_RS09270 PF04430 Protein of unknown function (DUF498/DUF598) AMD12_RS09275 PF01985 CRS1 / YhbY (CRM) domain AMD12_RS09280 PF01728 FtsJ-like methyltransferase AMD12_RS09285 PF06480 FtsH Extracellular AMD12_RS09285 PF17862 AAA+ lid domain AMD12_RS09285 PF00004 ATPase family associated with various cellular activities (AAA) AMD12_RS09285 PF01434 Peptidase family M41 AMD12_RS09290 PF00809 Pterin binding enzyme AMD12_RS09300 PF17209 Hfq protein AMD12_RS09305 PF16360 GTP-binding GTPase Middle Region AMD12_RS09305 PF13167 GTP-binding GTPase N-terminal AMD12_RS09305 PF01926 50S ribosome-binding GTPase AMD12_RS09310 PF02464 Competence-damaged protein AMD12_RS09315 PF03109 ABC1 family AMD12_RS09320 PF01726 LexA DNA binding domain AMD12_RS09320 PF00717 Peptidase S24-like AMD12_RS09325 PF00154 recA bacterial DNA recombination protein AMD12_RS09330 PF02631 RecX family AMD12_RS09335 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD12_RS09335 PF02272 DHHA1 domain AMD12_RS09335 PF01411 tRNA synthetases class II (A) AMD12_RS09340 PF02599 Global regulator protein family AMD12_RS09350 PF13426 PAS domain AMD12_RS09350 PF08447 PAS fold AMD12_RS09350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS09355 PF02678 Pirin AMD12_RS09355 PF17954 Quercetinase C-terminal cupin domain AMD12_RS09365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS09365 PF03466 LysR substrate binding domain AMD12_RS09390 PF08543 Phosphomethylpyrimidine kinase AMD12_RS09390 PF02581 Thiamine monophosphate synthase AMD12_RS09405 PF13638 PIN domain AMD12_RS09405 PF02562 PhoH-like protein AMD12_RS09410 PF00578 AhpC/TSA family AMD12_RS09425 PF00701 Dihydrodipicolinate synthetase family AMD12_RS09435 PF11953 Domain of unknown function (DUF3470) AMD12_RS09435 PF00037 4Fe-4S binding domain AMD12_RS09440 PF05035 2-keto-3-deoxy-galactonokinase AMD12_RS09445 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD12_RS09450 PF13378 Enolase C-terminal domain-like AMD12_RS09450 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD12_RS09455 PF01081 KDPG and KHG aldolase AMD12_RS09465 PF03466 LysR substrate binding domain AMD12_RS09465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS09480 PF03442 Carbohydrate binding domain X2 AMD12_RS09480 PF00942 Cellulose binding domain AMD12_RS09495 PF16338 Domain of unknown function (DUF4968) AMD12_RS09495 PF01055 Glycosyl hydrolases family 31 AMD12_RS09495 PF17137 Domain of unknown function (DUF5110) AMD12_RS09505 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD12_RS09505 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD12_RS09515 PF00083 Sugar (and other) transporter AMD12_RS09525 PF01520 N-acetylmuramoyl-L-alanine amidase AMD12_RS09530 PF02649 Type I GTP cyclohydrolase folE2 AMD12_RS09540 PF01743 Poly A polymerase head domain AMD12_RS09540 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD12_RS09540 PF12626 Polymerase A arginine-rich C-terminus AMD12_RS09545 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD12_RS09550 PF02548 Ketopantoate hydroxymethyltransferase AMD12_RS09555 PF02569 Pantoate-beta-alanine ligase AMD12_RS09560 PF02261 Aspartate decarboxylase AMD12_RS09565 PF00342 Phosphoglucose isomerase AMD12_RS09585 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD12_RS09585 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD12_RS09585 PF14310 Fibronectin type III-like domain AMD12_RS09590 PF00474 Sodium:solute symporter family AMD12_RS09595 PF00360 Phytochrome region AMD12_RS09595 PF01590 GAF domain AMD12_RS09595 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS09595 PF00563 EAL domain AMD12_RS09600 PF00150 Cellulase (glycosyl hydrolase family 5) AMD12_RS09600 PF02013 Cellulose or protein binding domain AMD12_RS09605 PF00072 Response regulator receiver domain AMD12_RS09615 PF04551 GcpE protein AMD12_RS09620 PF01569 PAP2 superfamily AMD12_RS09625 PF07690 Major Facilitator Superfamily AMD12_RS09630 PF01177 Asp/Glu/Hydantoin racemase AMD12_RS09635 PF00892 EamA-like transporter family AMD12_RS09640 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMD12_RS09640 PF01565 FAD binding domain AMD12_RS09645 PF01180 Dihydroorotate dehydrogenase AMD12_RS09660 PF00171 Aldehyde dehydrogenase family AMD12_RS09675 PF00535 Glycosyl transferase family 2 AMD12_RS09680 PF14883 Hypothetical glycosyl hydrolase family 13 AMD12_RS09680 PF01522 Polysaccharide deacetylase AMD12_RS09690 PF17287 POTRA domain AMD12_RS09690 PF08479 POTRA domain, ShlB-type AMD12_RS09690 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMD12_RS09695 PF05594 Haemagluttinin repeat AMD12_RS09695 PF13332 Hemagglutinin repeat AMD12_RS09695 PF04829 Pre-toxin domain with VENN motif AMD12_RS09700 PF04829 Pre-toxin domain with VENN motif AMD12_RS09700 PF05594 Haemagluttinin repeat AMD12_RS09700 PF13332 Hemagglutinin repeat AMD12_RS09705 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain AMD12_RS09705 PF13332 Hemagglutinin repeat AMD12_RS09705 PF13018 Extended Signal Peptide of Type V secretion system AMD12_RS09705 PF05594 Haemagluttinin repeat AMD12_RS09705 PF05860 haemagglutination activity domain AMD12_RS09715 PF03447 Homoserine dehydrogenase, NAD binding domain AMD12_RS09715 PF01842 ACT domain AMD12_RS09715 PF00742 Homoserine dehydrogenase AMD12_RS09715 PF13840 ACT domain AMD12_RS09715 PF00696 Amino acid kinase family AMD12_RS09720 PF08544 GHMP kinases C terminal AMD12_RS09720 PF00288 GHMP kinases N terminal domain AMD12_RS09730 PF14821 Threonine synthase N terminus AMD12_RS09730 PF00291 Pyridoxal-phosphate dependent enzyme AMD12_RS09740 PF13545 Crp-like helix-turn-helix domain AMD12_RS09740 PF00027 Cyclic nucleotide-binding domain AMD12_RS09745 PF03129 Anticodon binding domain AMD12_RS09745 PF13393 Histidyl-tRNA synthetase AMD12_RS09755 PF01634 ATP phosphoribosyltransferase AMD12_RS09755 PF08029 HisG, C-terminal domain AMD12_RS09760 PF00815 Histidinol dehydrogenase AMD12_RS09765 PF00155 Aminotransferase class I and II AMD12_RS09770 PF00475 Imidazoleglycerol-phosphate dehydratase AMD12_RS09775 PF00117 Glutamine amidotransferase class-I AMD12_RS09780 PF00977 Histidine biosynthesis protein AMD12_RS09785 PF00977 Histidine biosynthesis protein AMD12_RS09790 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMD12_RS09790 PF01502 Phosphoribosyl-AMP cyclohydrolase AMD12_RS09810 PF03079 ARD/ARD' family AMD12_RS09815 PF00596 Class II Aldolase and Adducin N-terminal domain AMD12_RS09820 PF13520 Amino acid permease AMD12_RS09825 PF13520 Amino acid permease AMD12_RS09835 PF01842 ACT domain AMD12_RS09835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD12_RS09835 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD12_RS09840 PF01565 FAD binding domain AMD12_RS09840 PF02913 FAD linked oxidases, C-terminal domain AMD12_RS09860 PF09285 Elongation factor P, C-terminal AMD12_RS09860 PF01132 Elongation factor P (EF-P) OB domain AMD12_RS09860 PF08207 Elongation factor P (EF-P) KOW-like domain AMD12_RS09865 PF00106 short chain dehydrogenase AMD12_RS09870 PF00682 HMGL-like AMD12_RS09880 PF00378 Enoyl-CoA hydratase/isomerase AMD12_RS09890 PF07670 Nucleoside recognition AMD12_RS09890 PF07664 Ferrous iron transport protein B C terminus AMD12_RS09890 PF02421 Ferrous iron transport protein B AMD12_RS09905 PF00155 Aminotransferase class I and II AMD12_RS09910 PF03475 3-alpha domain AMD12_RS09910 PF03473 MOSC domain AMD12_RS09915 PF05173 Dihydrodipicolinate reductase, C-terminus AMD12_RS09915 PF01113 Dihydrodipicolinate reductase, N-terminus AMD12_RS09920 PF00117 Glutamine amidotransferase class-I AMD12_RS09920 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMD12_RS09930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD12_RS09930 PF02142 MGS-like domain AMD12_RS09930 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD12_RS09935 PF03449 Transcription elongation factor, N-terminal AMD12_RS09935 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD12_RS09945 PF02272 DHHA1 domain AMD12_RS09945 PF01368 DHH family AMD12_RS09945 PF17768 RecJ OB domain AMD12_RS09990 PF04397 LytTr DNA-binding domain AMD12_RS09990 PF00072 Response regulator receiver domain AMD12_RS09995 PF03462 PCRF domain AMD12_RS09995 PF00472 RF-1 domain AMD12_RS10000 PF00152 tRNA synthetases class II (D, K and N) AMD12_RS10000 PF01336 OB-fold nucleic acid binding domain AMD12_RS10005 PF00072 Response regulator receiver domain AMD12_RS10010 PF01627 Hpt domain AMD12_RS10010 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS10010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS10010 PF00072 Response regulator receiver domain AMD12_RS10015 PF00378 Enoyl-CoA hydratase/isomerase AMD12_RS10020 PF00501 AMP-binding enzyme AMD12_RS10020 PF13193 AMP-binding enzyme C-terminal domain AMD12_RS10030 PF00694 Aconitase C-terminal domain AMD12_RS10030 PF00330 Aconitase family (aconitate hydratase) AMD12_RS10045 PF00330 Aconitase family (aconitate hydratase) AMD12_RS10045 PF11791 Aconitate B N-terminal domain AMD12_RS10045 PF06434 Aconitate hydratase 2 N-terminus AMD12_RS10050 PF00561 alpha/beta hydrolase fold AMD12_RS10055 PF00563 EAL domain AMD12_RS10055 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS10055 PF03707 Bacterial signalling protein N terminal repeat AMD12_RS10060 PF00072 Response regulator receiver domain AMD12_RS10060 PF01339 CheB methylesterase AMD12_RS10065 PF03975 CheD chemotactic sensory transduction AMD12_RS10070 PF03705 CheR methyltransferase, all-alpha domain AMD12_RS10070 PF01739 CheR methyltransferase, SAM binding domain AMD12_RS10075 PF00672 HAMP domain AMD12_RS10075 PF02203 Tar ligand binding domain homologue AMD12_RS10075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS10080 PF00672 HAMP domain AMD12_RS10080 PF02203 Tar ligand binding domain homologue AMD12_RS10080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS10085 PF00672 HAMP domain AMD12_RS10085 PF02203 Tar ligand binding domain homologue AMD12_RS10085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS10095 PF00672 HAMP domain AMD12_RS10095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS10095 PF02203 Tar ligand binding domain homologue AMD12_RS10100 PF00672 HAMP domain AMD12_RS10100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS10100 PF02203 Tar ligand binding domain homologue AMD12_RS10105 PF00672 HAMP domain AMD12_RS10105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS10105 PF02203 Tar ligand binding domain homologue AMD12_RS10110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS10110 PF00672 HAMP domain AMD12_RS10110 PF02203 Tar ligand binding domain homologue AMD12_RS10125 PF00672 HAMP domain AMD12_RS10125 PF02203 Tar ligand binding domain homologue AMD12_RS10125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS10130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS10130 PF08269 Cache domain AMD12_RS10140 PF00672 HAMP domain AMD12_RS10140 PF02203 Tar ligand binding domain homologue AMD12_RS10140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS10145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS10145 PF01627 Hpt domain AMD12_RS10145 PF02895 Signal transducing histidine kinase, homodimeric domain AMD12_RS10145 PF01584 CheW-like domain AMD12_RS10145 PF09078 CheY binding AMD12_RS10150 PF00072 Response regulator receiver domain AMD12_RS10160 PF01584 CheW-like domain AMD12_RS10165 PF13614 AAA domain AMD12_RS10170 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMD12_RS10170 PF00691 OmpA family AMD12_RS10175 PF01618 MotA/TolQ/ExbB proton channel family AMD12_RS10190 PF00069 Protein kinase domain AMD12_RS10190 PF03793 PASTA domain AMD12_RS10260 PF04055 Radical SAM superfamily AMD12_RS10260 PF13186 Iron-sulfur cluster-binding domain AMD12_RS10275 PF02895 Signal transducing histidine kinase, homodimeric domain AMD12_RS10275 PF01627 Hpt domain AMD12_RS10275 PF01584 CheW-like domain AMD12_RS10275 PF00072 Response regulator receiver domain AMD12_RS10275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS10280 PF04344 Chemotaxis phosphatase, CheZ AMD12_RS10285 PF00072 Response regulator receiver domain AMD12_RS10290 PF04545 Sigma-70, region 4 AMD12_RS10290 PF04539 Sigma-70 region 3 AMD12_RS10290 PF04542 Sigma-70 region 2 AMD12_RS10295 PF10609 NUBPL iron-transfer P-loop NTPase AMD12_RS10300 PF00448 SRP54-type protein, GTPase domain AMD12_RS10305 PF00771 FHIPEP family AMD12_RS10310 PF01312 FlhB HrpN YscU SpaS Family AMD12_RS10315 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS10315 PF00563 EAL domain AMD12_RS10315 PF03707 Bacterial signalling protein N terminal repeat AMD12_RS10325 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS10330 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS10335 PF01311 Bacterial export proteins, family 1 AMD12_RS10340 PF01313 Bacterial export proteins, family 3 AMD12_RS10345 PF00813 FliP family AMD12_RS10350 PF04347 Flagellar biosynthesis protein, FliO AMD12_RS10355 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMD12_RS10360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMD12_RS10360 PF02154 Flagellar motor switch protein FliM AMD12_RS10380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD12_RS10380 PF18269 T3SS EscN ATPase C-terminal domain AMD12_RS10390 PF01706 FliG C-terminal domain AMD12_RS10390 PF14841 FliG middle domain AMD12_RS10390 PF14842 FliG N-terminal domain AMD12_RS10395 PF01514 Secretory protein of YscJ/FliF family AMD12_RS10395 PF08345 Flagellar M-ring protein C-terminal AMD12_RS10400 PF02049 Flagellar hook-basal body complex protein FliE AMD12_RS10405 PF00535 Glycosyl transferase family 2 AMD12_RS10405 PF00534 Glycosyl transferases group 1 AMD12_RS10440 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD12_RS10440 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD12_RS10450 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD12_RS10455 PF02954 Bacterial regulatory protein, Fis family AMD12_RS10455 PF06490 Flagellar regulatory protein FleQ AMD12_RS10455 PF00158 Sigma-54 interaction domain AMD12_RS10460 PF00072 Response regulator receiver domain AMD12_RS10460 PF01339 CheB methylesterase AMD12_RS10465 PF04963 Sigma-54 factor, core binding domain AMD12_RS10465 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMD12_RS10465 PF04552 Sigma-54, DNA binding domain AMD12_RS10470 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS10470 PF00072 Response regulator receiver domain AMD12_RS10485 PF02561 Flagellar protein FliS AMD12_RS10490 PF02465 Flagellar hook-associated protein 2 N-terminus AMD12_RS10490 PF07196 Flagellin hook IN motif AMD12_RS10490 PF07195 Flagellar hook-associated protein 2 C-terminus AMD12_RS10495 PF00700 Bacterial flagellin C-terminal helical region AMD12_RS10495 PF00669 Bacterial flagellin N-terminal helical region AMD12_RS10500 PF00700 Bacterial flagellin C-terminal helical region AMD12_RS10500 PF00669 Bacterial flagellin N-terminal helical region AMD12_RS10505 PF07196 Flagellin hook IN motif AMD12_RS10505 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD12_RS10510 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMD12_RS10510 PF10135 Rod binding protein AMD12_RS10515 PF02119 Flagellar P-ring protein AMD12_RS10520 PF02107 Flagellar L-ring protein AMD12_RS10525 PF00460 Flagella basal body rod protein AMD12_RS10525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD12_RS10530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD12_RS10530 PF00460 Flagella basal body rod protein AMD12_RS10535 PF07559 Flagellar basal body protein FlaE AMD12_RS10535 PF00460 Flagella basal body rod protein AMD12_RS10535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD12_RS10540 PF03963 Flagellar hook capping protein - N-terminal region AMD12_RS10545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD12_RS10545 PF00460 Flagella basal body rod protein AMD12_RS10555 PF00072 Response regulator receiver domain AMD12_RS10555 PF01584 CheW-like domain AMD12_RS10575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS10575 PF13426 PAS domain AMD12_RS10575 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS10575 PF13188 PAS domain AMD12_RS10575 PF00989 PAS fold AMD12_RS10580 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS10580 PF00563 EAL domain AMD12_RS10580 PF03707 Bacterial signalling protein N terminal repeat AMD12_RS10585 PF07730 Histidine kinase AMD12_RS10585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS10590 PF03707 Bacterial signalling protein N terminal repeat AMD12_RS10590 PF00563 EAL domain AMD12_RS10590 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS10600 PF12729 Four helix bundle sensory module for signal transduction AMD12_RS10600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS10600 PF00672 HAMP domain AMD12_RS10605 PF04356 Protein of unknown function (DUF489) AMD12_RS10615 PF00293 NUDIX domain AMD12_RS10620 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMD12_RS10625 PF10431 C-terminal, D2-small domain, of ClpB protein AMD12_RS10625 PF00004 ATPase family associated with various cellular activities (AAA) AMD12_RS10625 PF07724 AAA domain (Cdc48 subfamily) AMD12_RS10625 PF17871 AAA lid domain AMD12_RS10625 PF02861 Clp amino terminal domain, pathogenicity island component AMD12_RS10630 PF01176 Translation initiation factor 1A / IF-1 AMD12_RS10635 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMD12_RS10645 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD12_RS10650 PF01580 FtsK/SpoIIIE family AMD12_RS10650 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMD12_RS10650 PF09397 Ftsk gamma domain AMD12_RS10650 PF17854 FtsK alpha domain AMD12_RS10660 PF03548 Outer membrane lipoprotein carrier protein LolA AMD12_RS10670 PF16193 AAA C-terminal domain AMD12_RS10670 PF12002 MgsA AAA+ ATPase C terminal AMD12_RS10670 PF00004 ATPase family associated with various cellular activities (AAA) AMD12_RS10675 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMD12_RS10685 PF00108 Thiolase, N-terminal domain AMD12_RS10685 PF02803 Thiolase, C-terminal domain AMD12_RS10690 PF00378 Enoyl-CoA hydratase/isomerase AMD12_RS10690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD12_RS10690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD12_RS10700 PF00334 Nucleoside diphosphate kinase AMD12_RS10705 PF04055 Radical SAM superfamily AMD12_RS10715 PF13464 Domain of unknown function (DUF4115) AMD12_RS10725 PF01011 PQQ enzyme repeat AMD12_RS10725 PF13360 PQQ-like domain AMD12_RS10730 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMD12_RS10730 PF01926 50S ribosome-binding GTPase AMD12_RS10735 PF00994 Probable molybdopterin binding domain AMD12_RS10735 PF03454 MoeA C-terminal region (domain IV) AMD12_RS10735 PF03453 MoeA N-terminal region (domain I and II) AMD12_RS10740 PF00899 ThiF family AMD12_RS10765 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS10765 PF00107 Zinc-binding dehydrogenase AMD12_RS10765 PF13823 Alcohol dehydrogenase GroES-associated AMD12_RS10775 PF03372 Endonuclease/Exonuclease/phosphatase family AMD12_RS10785 PF00994 Probable molybdopterin binding domain AMD12_RS10785 PF03454 MoeA C-terminal region (domain IV) AMD12_RS10785 PF03453 MoeA N-terminal region (domain I and II) AMD12_RS10790 PF12804 MobA-like NTP transferase domain AMD12_RS10800 PF00561 alpha/beta hydrolase fold AMD12_RS10805 PF01566 Natural resistance-associated macrophage protein AMD12_RS10810 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMD12_RS10810 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMD12_RS10815 PF14437 MafB19-like deaminase AMD12_RS10820 PF00929 Exonuclease AMD12_RS10825 PF05552 Conserved TM helix AMD12_RS10825 PF00924 Mechanosensitive ion channel AMD12_RS10830 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMD12_RS10830 PF02896 PEP-utilising enzyme, TIM barrel domain AMD12_RS10830 PF00391 PEP-utilising enzyme, mobile domain AMD12_RS10835 PF03618 Kinase/pyrophosphorylase AMD12_RS10855 PF01066 CDP-alcohol phosphatidyltransferase AMD12_RS10865 PF00561 alpha/beta hydrolase fold AMD12_RS10880 PF01266 FAD dependent oxidoreductase AMD12_RS10880 PF00355 Rieske [2Fe-2S] domain AMD12_RS10890 PF00575 S1 RNA binding domain AMD12_RS10890 PF17674 HHH domain AMD12_RS10890 PF09371 Tex-like protein N-terminal domain AMD12_RS10890 PF16921 Tex protein YqgF-like domain AMD12_RS10895 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS10895 PF00072 Response regulator receiver domain AMD12_RS10895 PF09308 LuxQ, periplasmic AMD12_RS10895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS10935 PF00034 Cytochrome c AMD12_RS10945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD12_RS10950 PF00873 AcrB/AcrD/AcrF family AMD12_RS10955 PF00873 AcrB/AcrD/AcrF family AMD12_RS10960 PF01081 KDPG and KHG aldolase AMD12_RS10965 PF00920 Dehydratase family AMD12_RS10970 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMD12_RS10975 PF02685 Glucokinase AMD12_RS10980 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD12_RS10980 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD12_RS10985 PF17912 MalK OB fold domain AMD12_RS10985 PF00005 ABC transporter AMD12_RS10995 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD12_RS11000 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD12_RS11005 PF00890 FAD binding domain AMD12_RS11005 PF02910 Fumarate reductase flavoprotein C-term AMD12_RS11015 PF13085 2Fe-2S iron-sulfur cluster binding domain AMD12_RS11020 PF03937 Flavinator of succinate dehydrogenase AMD12_RS11030 PF12704 MacB-like periplasmic core domain AMD12_RS11030 PF02687 FtsX-like permease family AMD12_RS11035 PF00005 ABC transporter AMD12_RS11045 PF03772 Competence protein AMD12_RS11045 PF00753 Metallo-beta-lactamase superfamily AMD12_RS11050 PF01618 MotA/TolQ/ExbB proton channel family AMD12_RS11060 PF00005 ABC transporter AMD12_RS11060 PF00664 ABC transporter transmembrane region AMD12_RS11065 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMD12_RS11070 PF02348 Cytidylyltransferase AMD12_RS11075 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMD12_RS11085 PF02151 UvrB/uvrC motif AMD12_RS11085 PF08459 UvrC Helix-hairpin-helix N-terminal AMD12_RS11085 PF01541 GIY-YIG catalytic domain AMD12_RS11090 PF01066 CDP-alcohol phosphatidyltransferase AMD12_RS11110 PF00550 Phosphopantetheine attachment site AMD12_RS11110 PF00668 Condensation domain AMD12_RS11110 PF13193 AMP-binding enzyme C-terminal domain AMD12_RS11110 PF00501 AMP-binding enzyme AMD12_RS11115 PF13193 AMP-binding enzyme C-terminal domain AMD12_RS11115 PF00668 Condensation domain AMD12_RS11115 PF00550 Phosphopantetheine attachment site AMD12_RS11115 PF00975 Thioesterase domain AMD12_RS11115 PF00501 AMP-binding enzyme AMD12_RS11150 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD12_RS11150 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD12_RS11150 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD12_RS11160 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD12_RS11170 PF17773 UPF0176 acylphosphatase like domain AMD12_RS11170 PF00581 Rhodanese-like domain AMD12_RS11175 PF00072 Response regulator receiver domain AMD12_RS11175 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS11180 PF00575 S1 RNA binding domain AMD12_RS11180 PF12111 Polyribonucleotide phosphorylase C terminal AMD12_RS11180 PF10150 Ribonuclease E/G family AMD12_RS11185 PF00849 RNA pseudouridylate synthase AMD12_RS11185 PF01479 S4 domain AMD12_RS11190 PF11737 Protein of unknown function (DUF3300) AMD12_RS11195 PF02535 ZIP Zinc transporter AMD12_RS11205 PF01329 Pterin 4 alpha carbinolamine dehydratase AMD12_RS11210 PF01106 NifU-like domain AMD12_RS11265 PF00106 short chain dehydrogenase AMD12_RS11295 PF01494 FAD binding domain AMD12_RS11300 PF09335 SNARE associated Golgi protein AMD12_RS11320 PF07995 Glucose / Sorbosone dehydrogenase AMD12_RS11330 PF00144 Beta-lactamase AMD12_RS11335 PF00072 Response regulator receiver domain AMD12_RS11335 PF04397 LytTr DNA-binding domain AMD12_RS11340 PF07694 5TMR of 5TMR-LYT AMD12_RS11340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS11340 PF06580 Histidine kinase AMD12_RS11355 PF00082 Subtilase family AMD12_RS11355 PF03797 Autotransporter beta-domain AMD12_RS11360 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD12_RS11365 PF00873 AcrB/AcrD/AcrF family AMD12_RS11375 PF08448 PAS fold AMD12_RS11375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS11375 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS11375 PF13426 PAS domain AMD12_RS11375 PF00072 Response regulator receiver domain AMD12_RS11380 PF00072 Response regulator receiver domain AMD12_RS11380 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS11385 PF12951 Passenger-associated-transport-repeat AMD12_RS11385 PF12951 Passenger-associated-transport-repeat AMD12_RS11390 PF08448 PAS fold AMD12_RS11390 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS11390 PF08447 PAS fold AMD12_RS11390 PF00563 EAL domain AMD12_RS11405 PF05974 Domain of unknown function (DUF892) AMD12_RS11420 PF10414 Sirohaem synthase dimerisation region AMD12_RS11420 PF14824 Sirohaem biosynthesis protein central AMD12_RS11420 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD12_RS11435 PF05977 Transmembrane secretion effector AMD12_RS11455 PF00857 Isochorismatase family AMD12_RS11470 PF00072 Response regulator receiver domain AMD12_RS11470 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS11490 PF03466 LysR substrate binding domain AMD12_RS11490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS11495 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AMD12_RS11495 PF00361 Proton-conducting membrane transporter AMD12_RS11495 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD12_RS11500 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AMD12_RS11515 PF01381 Helix-turn-helix AMD12_RS11520 PF05284 Protein of unknown function (DUF736) AMD12_RS11525 PF04002 RadC-like JAB domain AMD12_RS11550 PF00589 Phage integrase family AMD12_RS11550 PF13356 Arm DNA-binding domain AMD12_RS11565 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS11565 PF00593 TonB dependent receptor AMD12_RS11580 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AMD12_RS11605 PF00593 TonB dependent receptor AMD12_RS11605 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS11615 PF10947 Protein of unknown function (DUF2628) AMD12_RS11645 PF00664 ABC transporter transmembrane region AMD12_RS11645 PF00005 ABC transporter AMD12_RS11645 PF03412 Peptidase C39 family AMD12_RS11655 PF13614 AAA domain AMD12_RS11700 PF00145 C-5 cytosine-specific DNA methylase AMD12_RS11750 PF06250 YhcG PDDEXK nuclease domain AMD12_RS11750 PF17761 DUF1016 N-terminal domain AMD12_RS11770 PF00892 EamA-like transporter family AMD12_RS11775 PF00892 EamA-like transporter family AMD12_RS11785 PF02525 Flavodoxin-like fold AMD12_RS11790 PF02798 Glutathione S-transferase, N-terminal domain AMD12_RS11790 PF00043 Glutathione S-transferase, C-terminal domain AMD12_RS11795 PF05544 Proline racemase AMD12_RS11800 PF03358 NADPH-dependent FMN reductase AMD12_RS11810 PF07690 Major Facilitator Superfamily AMD12_RS11815 PF02311 AraC-like ligand binding domain AMD12_RS11815 PF12833 Helix-turn-helix domain AMD12_RS11965 PF13361 UvrD-like helicase C-terminal domain AMD12_RS11965 PF00580 UvrD/REP helicase N-terminal domain AMD12_RS11965 PF12462 DNA helicase IV / RNA helicase N terminal AMD12_RS12040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS12040 PF03466 LysR substrate binding domain AMD12_RS12045 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD12_RS12045 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD12_RS12050 PF03401 Tripartite tricarboxylate transporter family receptor AMD12_RS12065 PF04002 RadC-like JAB domain AMD12_RS12100 PF13356 Arm DNA-binding domain AMD12_RS12100 PF00589 Phage integrase family AMD12_RS12105 PF02540 NAD synthase AMD12_RS12105 PF00958 GMP synthase C terminal domain AMD12_RS12105 PF00117 Glutamine amidotransferase class-I AMD12_RS12110 PF00571 CBS domain AMD12_RS12110 PF00478 IMP dehydrogenase / GMP reductase domain AMD12_RS12115 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMD12_RS12115 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMD12_RS12125 PF00999 Sodium/hydrogen exchanger family AMD12_RS12125 PF02254 TrkA-N domain AMD12_RS12130 PF00483 Nucleotidyl transferase AMD12_RS12135 PF02719 Polysaccharide biosynthesis protein AMD12_RS12140 PF00953 Glycosyl transferase family 4 AMD12_RS12145 PF18073 Rubredoxin metal binding domain AMD12_RS12155 PF00216 Bacterial DNA-binding protein AMD12_RS12160 PF00575 S1 RNA binding domain AMD12_RS12165 PF02224 Cytidylate kinase AMD12_RS12170 PF00444 Ribosomal protein L36 AMD12_RS12180 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMD12_RS12185 PF00795 Carbon-nitrogen hydrolase AMD12_RS12210 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS12215 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS12235 PF00356 Bacterial regulatory proteins, lacI family AMD12_RS12245 PF03795 YCII-related domain AMD12_RS12250 PF02616 Segregation and condensation protein ScpA AMD12_RS12255 PF04079 Segregation and condensation complex subunit ScpB AMD12_RS12260 PF00849 RNA pseudouridylate synthase AMD12_RS12260 PF01479 S4 domain AMD12_RS12275 PF00795 Carbon-nitrogen hydrolase AMD12_RS12280 PF00155 Aminotransferase class I and II AMD12_RS12285 PF00005 ABC transporter AMD12_RS12290 PF03379 CcmB protein AMD12_RS12295 PF01578 Cytochrome C assembly protein AMD12_RS12305 PF03100 CcmE AMD12_RS12310 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMD12_RS12310 PF01578 Cytochrome C assembly protein AMD12_RS12315 PF08534 Redoxin AMD12_RS12320 PF03918 Cytochrome C biogenesis protein AMD12_RS12330 PF00561 alpha/beta hydrolase fold AMD12_RS12335 PF00313 'Cold-shock' DNA-binding domain AMD12_RS12340 PF00664 ABC transporter transmembrane region AMD12_RS12340 PF00005 ABC transporter AMD12_RS12345 PF00005 ABC transporter AMD12_RS12345 PF00664 ABC transporter transmembrane region AMD12_RS12350 PF01654 Cytochrome bd terminal oxidase subunit I AMD12_RS12355 PF02322 Cytochrome bd terminal oxidase subunit II AMD12_RS12375 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMD12_RS12375 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD12_RS12380 PF00171 Aldehyde dehydrogenase family AMD12_RS12385 PF00696 Amino acid kinase family AMD12_RS12385 PF01472 PUA domain AMD12_RS12395 PF00206 Lyase AMD12_RS12400 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD12_RS12410 PF00696 Amino acid kinase family AMD12_RS12410 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase AMD12_RS12415 PF01546 Peptidase family M20/M25/M40 AMD12_RS12415 PF07687 Peptidase dimerisation domain AMD12_RS12425 PF00764 Arginosuccinate synthase AMD12_RS12430 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD12_RS12430 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD12_RS12440 PF09190 DALR domain AMD12_RS12440 PF01406 tRNA synthetases class I (C) catalytic domain AMD12_RS12445 PF02657 Fe-S metabolism associated domain AMD12_RS12465 PF01809 Putative membrane protein insertion efficiency factor AMD12_RS12470 PF01979 Amidohydrolase family AMD12_RS12475 PF01551 Peptidase family M23 AMD12_RS12475 PF08460 Bacterial SH3 domain AMD12_RS12490 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AMD12_RS12495 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AMD12_RS12505 PF00753 Metallo-beta-lactamase superfamily AMD12_RS12525 PF01527 Transposase AMD12_RS12530 PF00295 Glycosyl hydrolases family 28 AMD12_RS12540 PF13419 Haloacid dehalogenase-like hydrolase AMD12_RS12550 PF01979 Amidohydrolase family AMD12_RS12560 PF08207 Elongation factor P (EF-P) KOW-like domain AMD12_RS12560 PF01132 Elongation factor P (EF-P) OB domain AMD12_RS12560 PF09285 Elongation factor P, C-terminal AMD12_RS12565 PF04055 Radical SAM superfamily AMD12_RS12570 PF13188 PAS domain AMD12_RS12570 PF03707 Bacterial signalling protein N terminal repeat AMD12_RS12570 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS12570 PF00563 EAL domain AMD12_RS12580 PF00588 SpoU rRNA Methylase family AMD12_RS12585 PF00459 Inositol monophosphatase family AMD12_RS12590 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD12_RS12590 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD12_RS12595 PF00545 ribonuclease AMD12_RS12605 PF00005 ABC transporter AMD12_RS12605 PF12848 ABC transporter AMD12_RS12605 PF16326 ABC transporter C-terminal domain AMD12_RS12610 PF00270 DEAD/DEAH box helicase AMD12_RS12610 PF03880 DbpA RNA binding domain AMD12_RS12610 PF00271 Helicase conserved C-terminal domain AMD12_RS12615 PF00156 Phosphoribosyl transferase domain AMD12_RS12620 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMD12_RS12625 PF00135 Carboxylesterase family AMD12_RS12630 PF02798 Glutathione S-transferase, N-terminal domain AMD12_RS12630 PF14497 Glutathione S-transferase, C-terminal domain AMD12_RS12635 PF00313 'Cold-shock' DNA-binding domain AMD12_RS12640 PF07152 YaeQ protein AMD12_RS12650 PF00072 Response regulator receiver domain AMD12_RS12650 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS12650 PF00563 EAL domain AMD12_RS12655 PF01435 Peptidase family M48 AMD12_RS12660 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD12_RS12665 PF00106 short chain dehydrogenase AMD12_RS12670 PF05233 PHB accumulation regulatory domain AMD12_RS12670 PF07879 PHB/PHA accumulation regulator DNA-binding domain AMD12_RS12685 PF01119 DNA mismatch repair protein, C-terminal domain AMD12_RS12685 PF08676 MutL C terminal dimerisation domain AMD12_RS12690 PF11741 AMIN domain AMD12_RS12690 PF01520 N-acetylmuramoyl-L-alanine amidase AMD12_RS12695 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMD12_RS12700 PF03853 YjeF-related protein N-terminus AMD12_RS12700 PF01256 Carbohydrate kinase AMD12_RS12705 PF08331 Domain of unknown function (DUF1730) AMD12_RS12710 PF13742 OB-fold nucleic acid binding domain AMD12_RS12710 PF02601 Exonuclease VII, large subunit AMD12_RS12720 PF03781 Sulfatase-modifying factor enzyme 1 AMD12_RS12725 PF00570 HRDC domain AMD12_RS12725 PF01612 3'-5' exonuclease AMD12_RS12730 PF13298 DNA polymerase Ligase (LigD) AMD12_RS12730 PF04679 ATP dependent DNA ligase C terminal region AMD12_RS12730 PF01068 ATP dependent DNA ligase domain AMD12_RS12750 PF00589 Phage integrase family AMD12_RS12805 PF01619 Proline dehydrogenase AMD12_RS12805 PF14850 DNA-binding domain of Proline dehydrogenase AMD12_RS12805 PF00171 Aldehyde dehydrogenase family AMD12_RS12805 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMD12_RS12825 PF02796 Helix-turn-helix domain of resolvase AMD12_RS12825 PF00239 Resolvase, N terminal domain AMD12_RS12840 PF02384 N-6 DNA Methylase AMD12_RS12845 PF09572 XamI restriction endonuclease AMD12_RS12900 PF01584 CheW-like domain AMD12_RS12905 PF00672 HAMP domain AMD12_RS12905 PF02743 Cache domain AMD12_RS12905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS12910 PF02245 Methylpurine-DNA glycosylase (MPG) AMD12_RS12915 PF00271 Helicase conserved C-terminal domain AMD12_RS12915 PF00270 DEAD/DEAH box helicase AMD12_RS12915 PF08494 DEAD/H associated AMD12_RS12930 PF04386 Stringent starvation protein B AMD12_RS12935 PF02798 Glutathione S-transferase, N-terminal domain AMD12_RS12935 PF00043 Glutathione S-transferase, C-terminal domain AMD12_RS12940 PF02167 Cytochrome C1 family AMD12_RS12945 PF00032 Cytochrome b(C-terminal)/b6/petD AMD12_RS12945 PF00033 Cytochrome b/b6/petB AMD12_RS12950 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMD12_RS12950 PF00355 Rieske [2Fe-2S] domain AMD12_RS12955 PF01464 Transglycosylase SLT domain AMD12_RS12970 PF04055 Radical SAM superfamily AMD12_RS12970 PF00919 Uncharacterized protein family UPF0004 AMD12_RS12970 PF01938 TRAM domain AMD12_RS12975 PF02562 PhoH-like protein AMD12_RS12985 PF02130 Uncharacterized protein family UPF0054 AMD12_RS12995 PF03471 Transporter associated domain AMD12_RS12995 PF00571 CBS domain AMD12_RS13010 PF00171 Aldehyde dehydrogenase family AMD12_RS13020 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS13025 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS13030 PF00005 ABC transporter AMD12_RS13030 PF08402 TOBE domain AMD12_RS13035 PF02321 Outer membrane efflux protein AMD12_RS13040 PF07690 Major Facilitator Superfamily AMD12_RS13045 PF13533 Biotin-lipoyl like AMD12_RS13050 PF13416 Bacterial extracellular solute-binding protein AMD12_RS13055 PF00202 Aminotransferase class-III AMD12_RS13060 PF00120 Glutamine synthetase, catalytic domain AMD12_RS13065 PF07722 Peptidase C26 AMD12_RS13070 PF00120 Glutamine synthetase, catalytic domain AMD12_RS13075 PF01266 FAD dependent oxidoreductase AMD12_RS13080 PF00072 Response regulator receiver domain AMD12_RS13080 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS13085 PF01814 Hemerythrin HHE cation binding domain AMD12_RS13090 PF07690 Major Facilitator Superfamily AMD12_RS13090 PF00083 Sugar (and other) transporter AMD12_RS13100 PF00384 Molybdopterin oxidoreductase AMD12_RS13105 PF02634 FdhD/NarQ family AMD12_RS13110 PF07690 Major Facilitator Superfamily AMD12_RS13120 PF00202 Aminotransferase class-III AMD12_RS13130 PF04286 Protein of unknown function (DUF445) AMD12_RS13135 PF00672 HAMP domain AMD12_RS13135 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS13135 PF01627 Hpt domain AMD12_RS13135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD12_RS13135 PF00072 Response regulator receiver domain AMD12_RS13135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS13140 PF00072 Response regulator receiver domain AMD12_RS13145 PF07690 Major Facilitator Superfamily AMD12_RS13150 PF05088 Bacterial NAD-glutamate dehydrogenase AMD12_RS13160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD12_RS13160 PF00529 HlyD membrane-fusion protein of T1SS AMD12_RS13165 PF00873 AcrB/AcrD/AcrF family AMD12_RS13170 PF00356 Bacterial regulatory proteins, lacI family AMD12_RS13175 PF00381 PTS HPr component phosphorylation site AMD12_RS13175 PF05524 PEP-utilising enzyme, N-terminal AMD12_RS13175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD12_RS13175 PF02896 PEP-utilising enzyme, TIM barrel domain AMD12_RS13175 PF00391 PEP-utilising enzyme, mobile domain AMD12_RS13180 PF00294 pfkB family carbohydrate kinase AMD12_RS13185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD12_RS13220 PF07549 SecD/SecF GG Motif AMD12_RS13220 PF02355 Protein export membrane protein AMD12_RS13225 PF02355 Protein export membrane protein AMD12_RS13225 PF07549 SecD/SecF GG Motif AMD12_RS13225 PF13721 SecD export protein N-terminal TM region AMD12_RS13230 PF02699 Preprotein translocase subunit AMD12_RS13235 PF01702 Queuine tRNA-ribosyltransferase AMD12_RS13240 PF02547 Queuosine biosynthesis protein AMD12_RS13285 PF00759 Glycosyl hydrolase family 9 AMD12_RS13285 PF02927 Cellulase N-terminal ig-like domain AMD12_RS13300 PF00037 4Fe-4S binding domain AMD12_RS13315 PF01467 Cytidylyltransferase-like AMD12_RS13325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS13325 PF00183 Hsp90 protein AMD12_RS13340 PF00593 TonB dependent receptor AMD12_RS13340 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS13350 PF04616 Glycosyl hydrolases family 43 AMD12_RS13355 PF07532 Bacterial Ig-like domain (group 4) AMD12_RS13360 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS13360 PF00593 TonB dependent receptor AMD12_RS13370 PF09286 Pro-kumamolisin, activation domain AMD12_RS13370 PF00082 Subtilase family AMD12_RS13395 PF13520 Amino acid permease AMD12_RS13410 PF01321 Creatinase/Prolidase N-terminal domain AMD12_RS13410 PF00557 Metallopeptidase family M24 AMD12_RS13415 PF00171 Aldehyde dehydrogenase family AMD12_RS13420 PF00701 Dihydrodipicolinate synthetase family AMD12_RS13425 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD12_RS13425 PF04324 BFD-like [2Fe-2S] binding domain AMD12_RS13435 PF01266 FAD dependent oxidoreductase AMD12_RS13440 PF05544 Proline racemase AMD12_RS13450 PF00448 SRP54-type protein, GTPase domain AMD12_RS13450 PF02881 SRP54-type protein, helical bundle domain AMD12_RS13455 PF10576 Iron-sulfur binding domain of endonuclease III AMD12_RS13455 PF00633 Helix-hairpin-helix motif AMD12_RS13455 PF14815 NUDIX domain AMD12_RS13455 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD12_RS13460 PF04362 Bacterial Fe(2+) trafficking AMD12_RS13465 PF13426 PAS domain AMD12_RS13465 PF00072 Response regulator receiver domain AMD12_RS13465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS13495 PF08212 Lipocalin-like domain AMD12_RS13505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD12_RS13505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD12_RS13505 PF02770 Acyl-CoA dehydrogenase, middle domain AMD12_RS13505 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMD12_RS13515 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMD12_RS13515 PF02780 Transketolase, C-terminal domain AMD12_RS13515 PF02779 Transketolase, pyrimidine binding domain AMD12_RS13535 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD12_RS13540 PF00753 Metallo-beta-lactamase superfamily AMD12_RS13540 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMD12_RS13545 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD12_RS13545 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD12_RS13560 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMD12_RS13575 PF14667 Polysaccharide biosynthesis C-terminal domain AMD12_RS13585 PF13439 Glycosyltransferase Family 4 AMD12_RS13585 PF00534 Glycosyl transferases group 1 AMD12_RS13605 PF02397 Bacterial sugar transferase AMD12_RS13625 PF13411 MerR HTH family regulatory protein AMD12_RS13630 PF00216 Bacterial DNA-binding protein AMD12_RS13635 PF01588 Putative tRNA binding domain AMD12_RS13635 PF03147 Ferredoxin-fold anticodon binding domain AMD12_RS13635 PF03484 tRNA synthetase B5 domain AMD12_RS13635 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMD12_RS13635 PF03483 B3/4 domain AMD12_RS13640 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMD12_RS13640 PF01409 tRNA synthetases class II core domain (F) AMD12_RS13645 PF00453 Ribosomal protein L20 AMD12_RS13650 PF01632 Ribosomal protein L35 AMD12_RS13655 PF00707 Translation initiation factor IF-3, C-terminal domain AMD12_RS13655 PF05198 Translation initiation factor IF-3, N-terminal domain AMD12_RS13660 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD12_RS13660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD12_RS13660 PF02824 TGS domain AMD12_RS13660 PF03129 Anticodon binding domain AMD12_RS13665 PF00356 Bacterial regulatory proteins, lacI family AMD12_RS13670 PF00128 Alpha amylase, catalytic domain AMD12_RS13670 PF00686 Starch binding domain AMD12_RS13675 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMD12_RS13685 PF14508 Glycosyl-hydrolase 97 N-terminal AMD12_RS13685 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD12_RS13685 PF10566 Glycoside hydrolase 97 AMD12_RS13700 PF00128 Alpha amylase, catalytic domain AMD12_RS13745 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AMD12_RS13750 PF05101 Type IV secretory pathway, VirB3-like protein AMD12_RS13760 PF01464 Transglycosylase SLT domain AMD12_RS13765 PF00437 Type II/IV secretion system protein AMD12_RS13770 PF03743 Bacterial conjugation TrbI-like protein AMD12_RS13790 PF02534 Type IV secretory system Conjugative DNA transfer AMD12_RS13805 PF17757 UvrB interaction domain AMD12_RS13805 PF12344 Ultra-violet resistance protein B AMD12_RS13805 PF00271 Helicase conserved C-terminal domain AMD12_RS13805 PF04851 Type III restriction enzyme, res subunit AMD12_RS13805 PF02151 UvrB/uvrC motif AMD12_RS13870 PF01555 DNA methylase AMD12_RS13920 PF00182 Chitinase class I AMD12_RS13985 PF07963 Prokaryotic N-terminal methylation motif AMD12_RS13985 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor AMD12_RS13990 PF05567 Neisseria PilC beta-propeller domain AMD12_RS14015 PF06580 Histidine kinase AMD12_RS14015 PF07694 5TMR of 5TMR-LYT AMD12_RS14015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS14020 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AMD12_RS14020 PF03641 Possible lysine decarboxylase AMD12_RS14020 PF11892 Domain of unknown function (DUF3412) AMD12_RS14025 PF00593 TonB dependent receptor AMD12_RS14030 PF01914 MarC family integral membrane protein AMD12_RS14040 PF00462 Glutaredoxin AMD12_RS14045 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD12_RS14045 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD12_RS14050 PF02222 ATP-grasp domain AMD12_RS14050 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMD12_RS14055 PF00731 AIR carboxylase AMD12_RS14065 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMD12_RS14065 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMD12_RS14075 PF03725 3' exoribonuclease family, domain 2 AMD12_RS14075 PF00013 KH domain AMD12_RS14075 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMD12_RS14075 PF01138 3' exoribonuclease family, domain 1 AMD12_RS14075 PF00575 S1 RNA binding domain AMD12_RS14080 PF00312 Ribosomal protein S15 AMD12_RS14085 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMD12_RS14085 PF09157 Pseudouridine synthase II TruB, C-terminal AMD12_RS14085 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMD12_RS14090 PF02033 Ribosome-binding factor A AMD12_RS14095 PF00009 Elongation factor Tu GTP binding domain AMD12_RS14095 PF04760 Translation initiation factor IF-2, N-terminal region AMD12_RS14095 PF11987 Translation-initiation factor 2 AMD12_RS14095 PF08364 Bacterial translation initiation factor IF-2 associated region AMD12_RS14100 PF00575 S1 RNA binding domain AMD12_RS14100 PF13184 NusA-like KH domain AMD12_RS14100 PF08529 NusA N-terminal domain AMD12_RS14105 PF17384 RimP C-terminal SH3 domain AMD12_RS14105 PF02576 RimP N-terminal domain AMD12_RS14115 PF00361 Proton-conducting membrane transporter AMD12_RS14120 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMD12_RS14120 PF00361 Proton-conducting membrane transporter AMD12_RS14125 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD12_RS14125 PF00361 Proton-conducting membrane transporter AMD12_RS14130 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD12_RS14135 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMD12_RS14140 PF12838 4Fe-4S dicluster domain AMD12_RS14145 PF00146 NADH dehydrogenase AMD12_RS14150 PF00384 Molybdopterin oxidoreductase AMD12_RS14150 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AMD12_RS14150 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD12_RS14155 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD12_RS14155 PF10531 SLBB domain AMD12_RS14155 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMD12_RS14165 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMD12_RS14170 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMD12_RS14175 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMD12_RS14180 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMD12_RS14195 PF00121 Triosephosphate isomerase AMD12_RS14200 PF00106 short chain dehydrogenase AMD12_RS14215 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS14215 PF03707 Bacterial signalling protein N terminal repeat AMD12_RS14215 PF00563 EAL domain AMD12_RS14235 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD12_RS14235 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD12_RS14235 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD12_RS14235 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD12_RS14240 PF01039 Carboxyl transferase domain AMD12_RS14240 PF17848 Acetyl-coA carboxylase zinc finger domain AMD12_RS14245 PF00290 Tryptophan synthase alpha chain AMD12_RS14255 PF00291 Pyridoxal-phosphate dependent enzyme AMD12_RS14260 PF03466 LysR substrate binding domain AMD12_RS14260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS14265 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMD12_RS14270 PF01416 tRNA pseudouridine synthase AMD12_RS14290 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMD12_RS14290 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD12_RS14295 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD12_RS14295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD12_RS14300 PF01264 Chorismate synthase AMD12_RS14305 PF05175 Methyltransferase small domain AMD12_RS14310 PF02630 SCO1/SenC AMD12_RS14315 PF02666 Phosphatidylserine decarboxylase AMD12_RS14325 PF05872 Bacterial protein of unknown function (DUF853) AMD12_RS14330 PF00293 NUDIX domain AMD12_RS14345 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD12_RS14345 PF03449 Transcription elongation factor, N-terminal AMD12_RS14350 PF18693 TRAM domain AMD12_RS14350 PF04055 Radical SAM superfamily AMD12_RS14350 PF00919 Uncharacterized protein family UPF0004 AMD12_RS14355 PF01738 Dienelactone hydrolase family AMD12_RS14375 PF00692 dUTPase AMD12_RS14380 PF10609 NUBPL iron-transfer P-loop NTPase AMD12_RS14385 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS14385 PF00593 TonB dependent receptor AMD12_RS14400 PF01431 Peptidase family M13 AMD12_RS14400 PF05649 Peptidase family M13 AMD12_RS14405 PF05649 Peptidase family M13 AMD12_RS14405 PF01431 Peptidase family M13 AMD12_RS14420 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD12_RS14425 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD12_RS14425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD12_RS14430 PF01266 FAD dependent oxidoreductase AMD12_RS14435 PF04235 Protein of unknown function (DUF418) AMD12_RS14440 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD12_RS14445 PF00877 NlpC/P60 family AMD12_RS14450 PF00877 NlpC/P60 family AMD12_RS14465 PF00375 Sodium:dicarboxylate symporter family AMD12_RS14470 PF00245 Alkaline phosphatase AMD12_RS14475 PF09179 TilS substrate binding domain AMD12_RS14475 PF01171 PP-loop family AMD12_RS14475 PF11734 TilS substrate C-terminal domain AMD12_RS14480 PF02609 Exonuclease VII small subunit AMD12_RS14485 PF00348 Polyprenyl synthetase AMD12_RS14490 PF14521 Lysine-specific metallo-endopeptidase AMD12_RS14500 PF01523 Putative modulator of DNA gyrase AMD12_RS14505 PF04751 Protein of unknown function (DUF615) AMD12_RS14510 PF01523 Putative modulator of DNA gyrase AMD12_RS14520 PF13502 AsmA-like C-terminal region AMD12_RS14520 PF13116 Protein of unknown function AMD12_RS14525 PF10150 Ribonuclease E/G family AMD12_RS14525 PF00575 S1 RNA binding domain AMD12_RS14530 PF02545 Maf-like protein AMD12_RS14535 PF04402 Protein of unknown function (DUF541) AMD12_RS14550 PF02590 Predicted SPOUT methyltransferase AMD12_RS14565 PF01467 Cytidylyltransferase-like AMD12_RS14580 PF08264 Anticodon-binding domain of tRNA AMD12_RS14580 PF00133 tRNA synthetases class I (I, L, M and V) AMD12_RS14580 PF13603 Leucyl-tRNA synthetase, Domain 2 AMD12_RS14590 PF00085 Thioredoxin AMD12_RS14615 PF04070 Domain of unknown function (DUF378) AMD12_RS14620 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD12_RS14630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS14630 PF03466 LysR substrate binding domain AMD12_RS14660 PF00005 ABC transporter AMD12_RS14660 PF00664 ABC transporter transmembrane region AMD12_RS14670 PF00873 AcrB/AcrD/AcrF family AMD12_RS14685 PF02321 Outer membrane efflux protein AMD12_RS14690 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS14690 PF00072 Response regulator receiver domain AMD12_RS14695 PF00672 HAMP domain AMD12_RS14695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS14695 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS14700 PF00999 Sodium/hydrogen exchanger family AMD12_RS14705 PF00144 Beta-lactamase AMD12_RS14710 PF03737 Aldolase/RraA AMD12_RS14730 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS14735 PF00849 RNA pseudouridylate synthase AMD12_RS14735 PF01479 S4 domain AMD12_RS14740 PF08448 PAS fold AMD12_RS14740 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS14740 PF00563 EAL domain AMD12_RS14745 PF03880 DbpA RNA binding domain AMD12_RS14745 PF00270 DEAD/DEAH box helicase AMD12_RS14745 PF00271 Helicase conserved C-terminal domain AMD12_RS14790 PF06029 AlkA N-terminal domain AMD12_RS14790 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD12_RS14795 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMD12_RS14795 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD12_RS14805 PF00654 Voltage gated chloride channel AMD12_RS14810 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS14810 PF00107 Zinc-binding dehydrogenase AMD12_RS14825 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS14825 PF00593 TonB dependent receptor AMD12_RS14835 PF01483 Proprotein convertase P-domain AMD12_RS14835 PF00082 Subtilase family AMD12_RS14845 PF00082 Subtilase family AMD12_RS14845 PF01483 Proprotein convertase P-domain AMD12_RS14855 PF00248 Aldo/keto reductase family AMD12_RS14860 PF07690 Major Facilitator Superfamily AMD12_RS14865 PF03466 LysR substrate binding domain AMD12_RS14865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS14875 PF12833 Helix-turn-helix domain AMD12_RS14875 PF06719 AraC-type transcriptional regulator N-terminus AMD12_RS14885 PF00440 Bacterial regulatory proteins, tetR family AMD12_RS14885 PF16859 Tetracyclin repressor-like, C-terminal domain AMD12_RS14890 PF02321 Outer membrane efflux protein AMD12_RS14895 PF00873 AcrB/AcrD/AcrF family AMD12_RS14900 PF00529 HlyD membrane-fusion protein of T1SS AMD12_RS14900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD12_RS14910 PF01475 Ferric uptake regulator family AMD12_RS14915 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD12_RS14940 PF06123 Inner membrane protein CreD AMD12_RS14950 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS14950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS14950 PF00672 HAMP domain AMD12_RS14955 PF00072 Response regulator receiver domain AMD12_RS14955 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS14960 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMD12_RS14970 PF02559 CarD-like/TRCF domain AMD12_RS14970 PF00271 Helicase conserved C-terminal domain AMD12_RS14970 PF03461 TRCF domain AMD12_RS14970 PF17757 UvrB interaction domain AMD12_RS14970 PF00270 DEAD/DEAH box helicase AMD12_RS15005 PF01627 Hpt domain AMD12_RS15005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS15005 PF09078 CheY binding AMD12_RS15005 PF01584 CheW-like domain AMD12_RS15005 PF02895 Signal transducing histidine kinase, homodimeric domain AMD12_RS15010 PF00672 HAMP domain AMD12_RS15010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS15010 PF02203 Tar ligand binding domain homologue AMD12_RS15015 PF01584 CheW-like domain AMD12_RS15020 PF13426 PAS domain AMD12_RS15020 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS15020 PF00563 EAL domain AMD12_RS15025 PF01739 CheR methyltransferase, SAM binding domain AMD12_RS15025 PF03705 CheR methyltransferase, all-alpha domain AMD12_RS15030 PF00072 Response regulator receiver domain AMD12_RS15030 PF01339 CheB methylesterase AMD12_RS15035 PF13091 PLD-like domain AMD12_RS15040 PF01431 Peptidase family M13 AMD12_RS15040 PF05649 Peptidase family M13 AMD12_RS15050 PF00300 Histidine phosphatase superfamily (branch 1) AMD12_RS15055 PF04493 Endonuclease V AMD12_RS15065 PF05726 Pirin C-terminal cupin domain AMD12_RS15065 PF02678 Pirin AMD12_RS15080 PF02678 Pirin AMD12_RS15080 PF05726 Pirin C-terminal cupin domain AMD12_RS15085 PF13722 5TM C-terminal transporter carbon starvation CstA AMD12_RS15085 PF02554 Carbon starvation protein CstA AMD12_RS15090 PF04328 Selenoprotein, putative AMD12_RS15145 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD12_RS15145 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD12_RS15150 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD12_RS15150 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD12_RS15155 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD12_RS15155 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMD12_RS15155 PF01799 [2Fe-2S] binding domain AMD12_RS15160 PF16197 Ketoacyl-synthetase C-terminal extension AMD12_RS15160 PF08659 KR domain AMD12_RS15160 PF00550 Phosphopantetheine attachment site AMD12_RS15160 PF09277 Erythronolide synthase, docking AMD12_RS15160 PF08990 Erythronolide synthase docking AMD12_RS15160 PF14765 Polyketide synthase dehydratase AMD12_RS15160 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS15160 PF00698 Acyl transferase domain AMD12_RS15160 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD12_RS15160 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD12_RS15165 PF00563 EAL domain AMD12_RS15165 PF01590 GAF domain AMD12_RS15165 PF00360 Phytochrome region AMD12_RS15165 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS15180 PF02384 N-6 DNA Methylase AMD12_RS15180 PF12161 HsdM N-terminal domain AMD12_RS15205 PF00436 Single-strand binding protein family AMD12_RS15210 PF00348 Polyprenyl synthetase AMD12_RS15220 PF02875 Mur ligase family, glutamate ligase domain AMD12_RS15220 PF08245 Mur ligase middle domain AMD12_RS15235 PF01842 ACT domain AMD12_RS15235 PF00696 Amino acid kinase family AMD12_RS15240 PF02567 Phenazine biosynthesis-like protein AMD12_RS15245 PF02567 Phenazine biosynthesis-like protein AMD12_RS15255 PF02566 OsmC-like protein AMD12_RS15260 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD12_RS15260 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD12_RS15265 PF03652 Holliday junction resolvase AMD12_RS15270 PF02622 Uncharacterized ACR, COG1678 AMD12_RS15280 PF00117 Glutamine amidotransferase class-I AMD12_RS15280 PF00958 GMP synthase C terminal domain AMD12_RS15280 PF13302 Acetyltransferase (GNAT) domain AMD12_RS15280 PF13673 Acetyltransferase (GNAT) domain AMD12_RS15280 PF03352 Methyladenine glycosylase AMD12_RS15290 PF03211 Pectate lyase AMD12_RS15295 PF00437 Type II/IV secretion system protein AMD12_RS15300 PF00437 Type II/IV secretion system protein AMD12_RS15305 PF01168 Alanine racemase, N-terminal domain AMD12_RS15310 PF03807 NADP oxidoreductase coenzyme F420-dependent AMD12_RS15310 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMD12_RS15320 PF01551 Peptidase family M23 AMD12_RS15340 PF01965 DJ-1/PfpI family AMD12_RS15350 PF02082 Transcriptional regulator AMD12_RS15355 PF01458 Uncharacterized protein family (UPF0051) AMD12_RS15360 PF00005 ABC transporter AMD12_RS15365 PF01458 Uncharacterized protein family (UPF0051) AMD12_RS15370 PF00266 Aminotransferase class-V AMD12_RS15380 PF00355 Rieske [2Fe-2S] domain AMD12_RS15385 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS15385 PF00593 TonB dependent receptor AMD12_RS15390 PF13640 2OG-Fe(II) oxygenase superfamily AMD12_RS15390 PF18331 PKHD-type hydroxylase C-terminal domain AMD12_RS15415 PF02424 ApbE family AMD12_RS15420 PF00667 FAD binding domain AMD12_RS15420 PF00175 Oxidoreductase NAD-binding domain AMD12_RS15420 PF00258 Flavodoxin AMD12_RS15440 PF01546 Peptidase family M20/M25/M40 AMD12_RS15440 PF07687 Peptidase dimerisation domain AMD12_RS15450 PF01636 Phosphotransferase enzyme family AMD12_RS15455 PF00483 Nucleotidyl transferase AMD12_RS15460 PF00308 Bacterial dnaA protein AMD12_RS15465 PF01594 AI-2E family transporter AMD12_RS15475 PF02769 AIR synthase related protein, C-terminal domain AMD12_RS15475 PF00586 AIR synthase related protein, N-terminal domain AMD12_RS15485 PF00551 Formyl transferase AMD12_RS15505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD12_RS15510 PF01722 BolA-like protein AMD12_RS15515 PF01380 SIS domain AMD12_RS15515 PF00571 CBS domain AMD12_RS15530 PF03968 OstA-like protein AMD12_RS15535 PF00005 ABC transporter AMD12_RS15540 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMD12_RS15540 PF04963 Sigma-54 factor, core binding domain AMD12_RS15540 PF04552 Sigma-54, DNA binding domain AMD12_RS15545 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMD12_RS15550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD12_RS15555 PF02603 HPr Serine kinase N terminus AMD12_RS15555 PF07475 HPr Serine kinase C-terminal domain AMD12_RS15560 PF03668 P-loop ATPase protein family AMD12_RS15570 PF00381 PTS HPr component phosphorylation site AMD12_RS15575 PF02896 PEP-utilising enzyme, TIM barrel domain AMD12_RS15575 PF05524 PEP-utilising enzyme, N-terminal AMD12_RS15575 PF00391 PEP-utilising enzyme, mobile domain AMD12_RS15580 PF00571 CBS domain AMD12_RS15580 PF03448 MgtE intracellular N domain AMD12_RS15580 PF01769 Divalent cation transporter AMD12_RS15585 PF00756 Putative esterase AMD12_RS15590 PF02322 Cytochrome bd terminal oxidase subunit II AMD12_RS15595 PF01654 Cytochrome bd terminal oxidase subunit I AMD12_RS15605 PF00324 Amino acid permease AMD12_RS15610 PF00544 Pectate lyase AMD12_RS15615 PF00561 alpha/beta hydrolase fold AMD12_RS15625 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS15630 PF00324 Amino acid permease AMD12_RS15650 PF12706 Beta-lactamase superfamily domain AMD12_RS15655 PF04820 Tryptophan halogenase AMD12_RS15680 PF09278 MerR, DNA binding AMD12_RS15680 PF00376 MerR family regulatory protein AMD12_RS15685 PF07690 Major Facilitator Superfamily AMD12_RS15695 PF03738 Glutathionylspermidine synthase preATP-grasp AMD12_RS15720 PF04012 PspA/IM30 family AMD12_RS15730 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMD12_RS15730 PF01243 Pyridoxamine 5'-phosphate oxidase AMD12_RS15735 PF01202 Shikimate kinase AMD12_RS15740 PF01761 3-dehydroquinate synthase AMD12_RS15750 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMD12_RS15820 PF01590 GAF domain AMD12_RS15820 PF02954 Bacterial regulatory protein, Fis family AMD12_RS15820 PF00158 Sigma-54 interaction domain AMD12_RS15825 PF07690 Major Facilitator Superfamily AMD12_RS15830 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD12_RS15830 PF00672 HAMP domain AMD12_RS15830 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS15830 PF01627 Hpt domain AMD12_RS15830 PF00072 Response regulator receiver domain AMD12_RS15830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS15835 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS15835 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD12_RS15835 PF00072 Response regulator receiver domain AMD12_RS15835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS15835 PF01627 Hpt domain AMD12_RS15835 PF00672 HAMP domain AMD12_RS15845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS15845 PF01627 Hpt domain AMD12_RS15845 PF00072 Response regulator receiver domain AMD12_RS15845 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS15850 PF04264 YceI-like domain AMD12_RS15870 PF03313 Serine dehydratase alpha chain AMD12_RS15870 PF03315 Serine dehydratase beta chain AMD12_RS15875 PF12697 Alpha/beta hydrolase family AMD12_RS15880 PF00696 Amino acid kinase family AMD12_RS15880 PF03447 Homoserine dehydrogenase, NAD binding domain AMD12_RS15880 PF00742 Homoserine dehydrogenase AMD12_RS15885 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD12_RS15890 PF00561 alpha/beta hydrolase fold AMD12_RS15895 PF08525 Opacity-associated protein A N-terminal motif AMD12_RS15895 PF01476 LysM domain AMD12_RS15895 PF01551 Peptidase family M23 AMD12_RS15900 PF00009 Elongation factor Tu GTP binding domain AMD12_RS15900 PF16658 Class II release factor RF3, C-terminal domain AMD12_RS15905 PF03006 Haemolysin-III related AMD12_RS15910 PF05170 AsmA family AMD12_RS15915 PF00478 IMP dehydrogenase / GMP reductase domain AMD12_RS15915 PF00571 CBS domain AMD12_RS15920 PF00535 Glycosyl transferase family 2 AMD12_RS15925 PF00912 Transglycosylase AMD12_RS15930 PF01430 Hsp33 protein AMD12_RS15940 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS15940 PF00593 TonB dependent receptor AMD12_RS15950 PF00440 Bacterial regulatory proteins, tetR family AMD12_RS15955 PF00561 alpha/beta hydrolase fold AMD12_RS15960 PF09317 Domain of unknown function (DUF1974) AMD12_RS15960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD12_RS15960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD12_RS15985 PF01597 Glycine cleavage H-protein AMD12_RS15990 PF01571 Aminomethyltransferase folate-binding domain AMD12_RS15990 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMD12_RS16000 PF01145 SPFH domain / Band 7 family AMD12_RS16000 PF16200 C-terminal region of band_7 AMD12_RS16005 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMD12_RS16010 PF03819 MazG nucleotide pyrophosphohydrolase domain AMD12_RS16015 PF00459 Inositol monophosphatase family AMD12_RS16020 PF00293 NUDIX domain AMD12_RS16025 PF00202 Aminotransferase class-III AMD12_RS16030 PF04452 RNA methyltransferase AMD12_RS16035 PF02685 Glucokinase AMD12_RS16050 PF00704 Glycosyl hydrolases family 18 AMD12_RS16050 PF01476 LysM domain AMD12_RS16065 PF07691 PA14 domain AMD12_RS16065 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD12_RS16065 PF14310 Fibronectin type III-like domain AMD12_RS16065 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD12_RS16075 PF01301 Glycosyl hydrolases family 35 AMD12_RS16080 PF13520 Amino acid permease AMD12_RS16090 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMD12_RS16090 PF02056 Family 4 glycosyl hydrolase AMD12_RS16100 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD12_RS16100 PF07971 Glycosyl hydrolase family 92 AMD12_RS16105 PF01301 Glycosyl hydrolases family 35 AMD12_RS16135 PF03932 CutC family AMD12_RS16140 PF01112 Asparaginase AMD12_RS16150 PF13302 Acetyltransferase (GNAT) domain AMD12_RS16165 PF01584 CheW-like domain AMD12_RS16165 PF01627 Hpt domain AMD12_RS16165 PF00072 Response regulator receiver domain AMD12_RS16165 PF02895 Signal transducing histidine kinase, homodimeric domain AMD12_RS16165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS16170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS16170 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AMD12_RS16175 PF01584 CheW-like domain AMD12_RS16180 PF00072 Response regulator receiver domain AMD12_RS16185 PF00072 Response regulator receiver domain AMD12_RS16190 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMD12_RS16190 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMD12_RS16200 PF03747 ADP-ribosylglycohydrolase AMD12_RS16205 PF00814 Glycoprotease family AMD12_RS16210 PF04851 Type III restriction enzyme, res subunit AMD12_RS16210 PF13307 Helicase C-terminal domain AMD12_RS16220 PF00905 Penicillin binding protein transpeptidase domain AMD12_RS16220 PF14814 Bifunctional transglycosylase second domain AMD12_RS16220 PF00912 Transglycosylase AMD12_RS16225 PF00535 Glycosyl transferase family 2 AMD12_RS16235 PF13291 ACT domain AMD12_RS16235 PF04607 Region found in RelA / SpoT proteins AMD12_RS16235 PF02824 TGS domain AMD12_RS16240 PF12706 Beta-lactamase superfamily domain AMD12_RS16245 PF03070 TENA/THI-4/PQQC family AMD12_RS16250 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMD12_RS16255 PF13186 Iron-sulfur cluster-binding domain AMD12_RS16255 PF04055 Radical SAM superfamily AMD12_RS16270 PF02685 Glucokinase AMD12_RS16280 PF11898 Domain of unknown function (DUF3418) AMD12_RS16280 PF04408 Helicase associated domain (HA2) AMD12_RS16280 PF00271 Helicase conserved C-terminal domain AMD12_RS16280 PF00270 DEAD/DEAH box helicase AMD12_RS16280 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMD12_RS16285 PF00210 Ferritin-like domain AMD12_RS16290 PF00271 Helicase conserved C-terminal domain AMD12_RS16290 PF00570 HRDC domain AMD12_RS16290 PF16124 RecQ zinc-binding AMD12_RS16290 PF09382 RQC domain AMD12_RS16290 PF00270 DEAD/DEAH box helicase AMD12_RS16325 PF00672 HAMP domain AMD12_RS16325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS16325 PF02203 Tar ligand binding domain homologue AMD12_RS16330 PF01810 LysE type translocator AMD12_RS16335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS16335 PF03466 LysR substrate binding domain AMD12_RS16345 PF07536 HWE histidine kinase AMD12_RS16345 PF13581 Histidine kinase-like ATPase domain AMD12_RS16345 PF13426 PAS domain AMD12_RS16350 PF06508 Queuosine biosynthesis protein QueC AMD12_RS16360 PF04055 Radical SAM superfamily AMD12_RS16370 PF00691 OmpA family AMD12_RS16375 PF04052 TolB amino-terminal domain AMD12_RS16375 PF07676 WD40-like Beta Propeller Repeat AMD12_RS16385 PF02472 Biopolymer transport protein ExbD/TolR AMD12_RS16390 PF01618 MotA/TolQ/ExbB proton channel family AMD12_RS16395 PF03061 Thioesterase superfamily AMD12_RS16400 PF17864 RuvB AAA lid domain AMD12_RS16400 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMD12_RS16400 PF05491 RuvB C-terminal winged helix domain AMD12_RS16410 PF02705 K+ potassium transporter AMD12_RS16415 PF01330 RuvA N terminal domain AMD12_RS16415 PF07499 RuvA, C-terminal domain AMD12_RS16420 PF02075 Crossover junction endodeoxyribonuclease RuvC AMD12_RS16425 PF01709 Transcriptional regulator AMD12_RS16440 PF00152 tRNA synthetases class II (D, K and N) AMD12_RS16440 PF01336 OB-fold nucleic acid binding domain AMD12_RS16440 PF02938 GAD domain AMD12_RS16455 PF07690 Major Facilitator Superfamily AMD12_RS16465 PF05506 Domain of unknown function (DUF756) AMD12_RS16465 PF04185 Phosphoesterase family AMD12_RS16480 PF03466 LysR substrate binding domain AMD12_RS16480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS16490 PF12848 ABC transporter AMD12_RS16490 PF00005 ABC transporter AMD12_RS16495 PF00593 TonB dependent receptor AMD12_RS16495 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS16510 PF00593 TonB dependent receptor AMD12_RS16510 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS16515 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS16515 PF00593 TonB dependent receptor AMD12_RS16520 PF00067 Cytochrome P450 AMD12_RS16525 PF00999 Sodium/hydrogen exchanger family AMD12_RS16525 PF02254 TrkA-N domain AMD12_RS16550 PF00593 TonB dependent receptor AMD12_RS16550 PF07660 Secretin and TonB N terminus short domain AMD12_RS16550 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS16560 PF04183 IucA / IucC family AMD12_RS16560 PF06276 Ferric iron reductase FhuF-like transporter AMD12_RS16565 PF07690 Major Facilitator Superfamily AMD12_RS16570 PF06276 Ferric iron reductase FhuF-like transporter AMD12_RS16570 PF04183 IucA / IucC family AMD12_RS16575 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMD12_RS16575 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD12_RS16590 PF02654 Cobalamin-5-phosphate synthase AMD12_RS16600 PF02277 Phosphoribosyltransferase AMD12_RS16605 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMD12_RS16610 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD12_RS16610 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMD12_RS16615 PF00155 Aminotransferase class I and II AMD12_RS16620 PF17113 Regulatory signalling modulator protein AmpE AMD12_RS16620 PF03186 CobD/Cbib protein AMD12_RS16625 PF12557 Cob(I)alamin adenosyltransferase N terminal AMD12_RS16625 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMD12_RS16640 PF00593 TonB dependent receptor AMD12_RS16640 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS16645 PF10431 C-terminal, D2-small domain, of ClpB protein AMD12_RS16645 PF02861 Clp amino terminal domain, pathogenicity island component AMD12_RS16645 PF17871 AAA lid domain AMD12_RS16645 PF07724 AAA domain (Cdc48 subfamily) AMD12_RS16645 PF00004 ATPase family associated with various cellular activities (AAA) AMD12_RS16650 PF00005 ABC transporter AMD12_RS16655 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS16660 PF09084 NMT1/THI5 like AMD12_RS16665 PF00248 Aldo/keto reductase family AMD12_RS16670 PF00296 Luciferase-like monooxygenase AMD12_RS16675 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS16675 PF00593 TonB dependent receptor AMD12_RS16680 PF01541 GIY-YIG catalytic domain AMD12_RS16715 PF00593 TonB dependent receptor AMD12_RS16715 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS16720 PF02358 Trehalose-phosphatase AMD12_RS16725 PF00723 Glycosyl hydrolases family 15 AMD12_RS16730 PF00982 Glycosyltransferase family 20 AMD12_RS16735 PF01011 PQQ enzyme repeat AMD12_RS16740 PF00672 HAMP domain AMD12_RS16740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS16740 PF02203 Tar ligand binding domain homologue AMD12_RS16745 PF04134 Protein of unknown function, DUF393 AMD12_RS16755 PF02578 Multi-copper polyphenol oxidoreductase laccase AMD12_RS16760 PF00849 RNA pseudouridylate synthase AMD12_RS16765 PF13525 Outer membrane lipoprotein AMD12_RS16775 PF02540 NAD synthase AMD12_RS16775 PF00795 Carbon-nitrogen hydrolase AMD12_RS16805 PF13406 Transglycosylase SLT domain AMD12_RS16810 PF01526 Tn3 transposase DDE domain AMD12_RS16810 PF13700 Domain of unknown function (DUF4158) AMD12_RS16830 PF01129 NAD:arginine ADP-ribosyltransferase AMD12_RS16855 PF00549 CoA-ligase AMD12_RS16855 PF02629 CoA binding domain AMD12_RS16860 PF00549 CoA-ligase AMD12_RS16860 PF08442 ATP-grasp domain AMD12_RS16865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS16865 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS16870 PF02954 Bacterial regulatory protein, Fis family AMD12_RS16870 PF00158 Sigma-54 interaction domain AMD12_RS16870 PF00072 Response regulator receiver domain AMD12_RS16875 PF00437 Type II/IV secretion system protein AMD12_RS16875 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD12_RS16880 PF00437 Type II/IV secretion system protein AMD12_RS16880 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD12_RS16885 PF00437 Type II/IV secretion system protein AMD12_RS16885 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD12_RS16890 PF00114 Pilin (bacterial filament) AMD12_RS16890 PF07963 Prokaryotic N-terminal methylation motif AMD12_RS16895 PF07963 Prokaryotic N-terminal methylation motif AMD12_RS16895 PF00114 Pilin (bacterial filament) AMD12_RS16900 PF00482 Type II secretion system (T2SS), protein F AMD12_RS16905 PF06750 Bacterial Peptidase A24 N-terminal domain AMD12_RS16905 PF01478 Type IV leader peptidase family AMD12_RS16910 PF01121 Dephospho-CoA kinase AMD12_RS16935 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS16935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS16935 PF00989 PAS fold AMD12_RS16935 PF16736 Single Cache-like AMD12_RS16940 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS16940 PF00072 Response regulator receiver domain AMD12_RS16955 PF00128 Alpha amylase, catalytic domain AMD12_RS16955 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD12_RS17010 PF04002 RadC-like JAB domain AMD12_RS17035 PF00072 Response regulator receiver domain AMD12_RS17035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS17035 PF13426 PAS domain AMD12_RS17040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS17040 PF13426 PAS domain AMD12_RS17040 PF00072 Response regulator receiver domain AMD12_RS17125 PF13188 PAS domain AMD12_RS17125 PF08448 PAS fold AMD12_RS17125 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS17125 PF00072 Response regulator receiver domain AMD12_RS17125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS17150 PF13676 TIR domain AMD12_RS17165 PF03797 Autotransporter beta-domain AMD12_RS17165 PF00657 GDSL-like Lipase/Acylhydrolase AMD12_RS17175 PF05690 Thiazole biosynthesis protein ThiG AMD12_RS17180 PF02390 Putative methyltransferase AMD12_RS17185 PF03600 Citrate transporter AMD12_RS17185 PF02080 TrkA-C domain AMD12_RS17200 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD12_RS17205 PF01741 Large-conductance mechanosensitive channel, MscL AMD12_RS17220 PF00356 Bacterial regulatory proteins, lacI family AMD12_RS17230 PF00703 Glycosyl hydrolases family 2 AMD12_RS17230 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD12_RS17230 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMD12_RS17235 PF14508 Glycosyl-hydrolase 97 N-terminal AMD12_RS17235 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD12_RS17235 PF10566 Glycoside hydrolase 97 AMD12_RS17245 PF00135 Carboxylesterase family AMD12_RS17250 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD12_RS17250 PF00588 SpoU rRNA Methylase family AMD12_RS17260 PF11838 ERAP1-like C-terminal domain AMD12_RS17260 PF01433 Peptidase family M1 domain AMD12_RS17310 PF00873 AcrB/AcrD/AcrF family AMD12_RS17315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD12_RS17315 PF00529 HlyD membrane-fusion protein of T1SS AMD12_RS17320 PF00009 Elongation factor Tu GTP binding domain AMD12_RS17325 PF01507 Phosphoadenosine phosphosulfate reductase family AMD12_RS17330 PF00258 Flavodoxin AMD12_RS17330 PF00667 FAD binding domain AMD12_RS17330 PF00175 Oxidoreductase NAD-binding domain AMD12_RS17335 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMD12_RS17335 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMD12_RS17340 PF01507 Phosphoadenosine phosphosulfate reductase family AMD12_RS17360 PF01627 Hpt domain AMD12_RS17360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS17360 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS17360 PF00072 Response regulator receiver domain AMD12_RS17375 PF03466 LysR substrate binding domain AMD12_RS17375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS17380 PF10414 Sirohaem synthase dimerisation region AMD12_RS17380 PF14824 Sirohaem biosynthesis protein central AMD12_RS17380 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD12_RS17385 PF00291 Pyridoxal-phosphate dependent enzyme AMD12_RS17395 PF01661 Macro domain AMD12_RS17400 PF00274 Fructose-bisphosphate aldolase class-I AMD12_RS17405 PF02887 Pyruvate kinase, alpha/beta domain AMD12_RS17405 PF00224 Pyruvate kinase, barrel domain AMD12_RS17410 PF13419 Haloacid dehalogenase-like hydrolase AMD12_RS17415 PF00162 Phosphoglycerate kinase AMD12_RS17435 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD12_RS17435 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMD12_RS17445 PF03922 OmpW family AMD12_RS17450 PF03922 OmpW family AMD12_RS17460 PF04273 Putative phosphatase (DUF442) AMD12_RS17460 PF00753 Metallo-beta-lactamase superfamily AMD12_RS17470 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS17475 PF00005 ABC transporter AMD12_RS17475 PF03459 TOBE domain AMD12_RS17510 PF03734 L,D-transpeptidase catalytic domain AMD12_RS17510 PF01476 LysM domain AMD12_RS17515 PF04225 Opacity-associated protein A LysM-like domain AMD12_RS17515 PF01551 Peptidase family M23 AMD12_RS17525 PF00593 TonB dependent receptor AMD12_RS17525 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS17540 PF02780 Transketolase, C-terminal domain AMD12_RS17540 PF00456 Transketolase, thiamine diphosphate binding domain AMD12_RS17540 PF02779 Transketolase, pyrimidine binding domain AMD12_RS17545 PF00375 Sodium:dicarboxylate symporter family AMD12_RS17555 PF07584 Aerotolerance regulator N-terminal AMD12_RS17555 PF00092 von Willebrand factor type A domain AMD12_RS17575 PF17863 AAA lid domain AMD12_RS17575 PF07726 ATPase family associated with various cellular activities (AAA) AMD12_RS17580 PF11741 AMIN domain AMD12_RS17580 PF03958 Bacterial type II/III secretion system short domain AMD12_RS17580 PF00263 Bacterial type II and III secretion system protein AMD12_RS17580 PF07660 Secretin and TonB N terminus short domain AMD12_RS17585 PF04351 Pilus assembly protein, PilP AMD12_RS17590 PF04350 Pilus assembly protein, PilO AMD12_RS17595 PF05137 Fimbrial assembly protein (PilN) AMD12_RS17600 PF11104 Type IV pilus assembly protein PilM; AMD12_RS17605 PF00905 Penicillin binding protein transpeptidase domain AMD12_RS17605 PF00912 Transglycosylase AMD12_RS17605 PF17092 Penicillin-binding protein OB-like domain AMD12_RS17615 PF00285 Citrate synthase, C-terminal domain AMD12_RS17620 PF01197 Ribosomal protein L31 AMD12_RS17625 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD12_RS17630 PF00270 DEAD/DEAH box helicase AMD12_RS17630 PF00271 Helicase conserved C-terminal domain AMD12_RS17630 PF17191 RecG wedge domain AMD12_RS17635 PF01042 Endoribonuclease L-PSP AMD12_RS17640 PF13291 ACT domain AMD12_RS17640 PF02824 TGS domain AMD12_RS17640 PF04607 Region found in RelA / SpoT proteins AMD12_RS17645 PF01192 RNA polymerase Rpb6 AMD12_RS17650 PF00625 Guanylate kinase AMD12_RS17655 PF08340 Domain of unknown function (DUF1732) AMD12_RS17655 PF03755 YicC-like family, N-terminal region AMD12_RS17660 PF03725 3' exoribonuclease family, domain 2 AMD12_RS17660 PF01138 3' exoribonuclease family, domain 1 AMD12_RS17670 PF01725 Ham1 family AMD12_RS17675 PF06969 HemN C-terminal domain AMD12_RS17675 PF04055 Radical SAM superfamily AMD12_RS17690 PF00557 Metallopeptidase family M24 AMD12_RS17700 PF05195 Aminopeptidase P, N-terminal domain AMD12_RS17700 PF00557 Metallopeptidase family M24 AMD12_RS17705 PF03695 Uncharacterised protein family (UPF0149) AMD12_RS17715 PF05164 Cell division protein ZapA AMD12_RS17720 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMD12_RS17730 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMD12_RS17740 PF13369 Transglutaminase-like superfamily AMD12_RS17745 PF00301 Rubredoxin AMD12_RS17750 PF02581 Thiamine monophosphate synthase AMD12_RS17765 PF00202 Aminotransferase class-III AMD12_RS17770 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS17770 PF17874 MalT-like TPR region AMD12_RS17775 PF00127 Copper binding proteins, plastocyanin/azurin family AMD12_RS17780 PF00155 Aminotransferase class I and II AMD12_RS17790 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMD12_RS17790 PF00034 Cytochrome c AMD12_RS17795 PF01593 Flavin containing amine oxidoreductase AMD12_RS17810 PF00202 Aminotransferase class-III AMD12_RS17815 PF00027 Cyclic nucleotide-binding domain AMD12_RS17815 PF00520 Ion transport protein AMD12_RS17830 PF01569 PAP2 superfamily AMD12_RS17835 PF01062 Bestrophin, RFP-TM, chloride channel AMD12_RS17845 PF01225 Mur ligase family, catalytic domain AMD12_RS17845 PF08245 Mur ligase middle domain AMD12_RS17845 PF02875 Mur ligase family, glutamate ligase domain AMD12_RS17855 PF00365 Phosphofructokinase AMD12_RS17865 PF03030 Inorganic H+ pyrophosphatase AMD12_RS17875 PF00719 Inorganic pyrophosphatase AMD12_RS17885 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS17885 PF00593 TonB dependent receptor AMD12_RS17890 PF12833 Helix-turn-helix domain AMD12_RS17895 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS17895 PF18500 CadC C-terminal domain 1 AMD12_RS17900 PF13667 ThiC-associated domain AMD12_RS17900 PF01964 Radical SAM ThiC family AMD12_RS17905 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS17905 PF00593 TonB dependent receptor AMD12_RS17910 PF00672 HAMP domain AMD12_RS17910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS17920 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMD12_RS17920 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMD12_RS17925 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD12_RS17925 PF00205 Thiamine pyrophosphate enzyme, central domain AMD12_RS17925 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD12_RS17935 PF00291 Pyridoxal-phosphate dependent enzyme AMD12_RS17940 PF00682 HMGL-like AMD12_RS17940 PF08502 LeuA allosteric (dimerisation) domain AMD12_RS17945 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD12_RS17950 PF00694 Aconitase C-terminal domain AMD12_RS17955 PF00330 Aconitase family (aconitate hydratase) AMD12_RS17960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS17965 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS17980 PF02321 Outer membrane efflux protein AMD12_RS17985 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMD12_RS17990 PF03279 Bacterial lipid A biosynthesis acyltransferase AMD12_RS18015 PF03949 Malic enzyme, NAD binding domain AMD12_RS18015 PF00390 Malic enzyme, N-terminal domain AMD12_RS18015 PF01515 Phosphate acetyl/butaryl transferase AMD12_RS18020 PF00375 Sodium:dicarboxylate symporter family AMD12_RS18030 PF02743 Cache domain AMD12_RS18030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS18030 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS18035 PF07690 Major Facilitator Superfamily AMD12_RS18045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS18045 PF03466 LysR substrate binding domain AMD12_RS18050 PF00248 Aldo/keto reductase family AMD12_RS18065 PF00072 Response regulator receiver domain AMD12_RS18065 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS18075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS18075 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS18075 PF08521 Two-component sensor kinase N-terminal AMD12_RS18080 PF00072 Response regulator receiver domain AMD12_RS18080 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS18090 PF03600 Citrate transporter AMD12_RS18095 PF00106 short chain dehydrogenase AMD12_RS18100 PF00356 Bacterial regulatory proteins, lacI family AMD12_RS18115 PF00128 Alpha amylase, catalytic domain AMD12_RS18130 PF03193 RsgA GTPase AMD12_RS18135 PF00155 Aminotransferase class I and II AMD12_RS18150 PF00593 TonB dependent receptor AMD12_RS18150 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS18155 PF01522 Polysaccharide deacetylase AMD12_RS18160 PF00462 Glutaredoxin AMD12_RS18195 PF02645 Uncharacterised protein, DegV family COG1307 AMD12_RS18200 PF01327 Polypeptide deformylase AMD12_RS18205 PF03960 ArsC family AMD12_RS18220 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) AMD12_RS18225 PF01270 Glycosyl hydrolases family 8 AMD12_RS18230 PF03170 Bacterial cellulose synthase subunit AMD12_RS18235 PF03552 Cellulose synthase AMD12_RS18235 PF07238 PilZ domain AMD12_RS18235 PF00535 Glycosyl transferase family 2 AMD12_RS18250 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMD12_RS18250 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMD12_RS18305 PF07702 UTRA domain AMD12_RS18305 PF00392 Bacterial regulatory proteins, gntR family AMD12_RS18315 PF00263 Bacterial type II and III secretion system protein AMD12_RS18315 PF03958 Bacterial type II/III secretion system short domain AMD12_RS18325 PF10741 Type II secretion system (T2SS), protein M subtype b AMD12_RS18330 PF05137 Fimbrial assembly protein (PilN) AMD12_RS18335 PF03934 Type II secretion system (T2SS), protein K AMD12_RS18345 PF07963 Prokaryotic N-terminal methylation motif AMD12_RS18350 PF12019 Type II transport protein GspH AMD12_RS18355 PF08334 Type II secretion system (T2SS), protein G AMD12_RS18360 PF00482 Type II secretion system (T2SS), protein F AMD12_RS18365 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD12_RS18365 PF00437 Type II/IV secretion system protein AMD12_RS18370 PF00082 Subtilase family AMD12_RS18370 PF04151 Bacterial pre-peptidase C-terminal domain AMD12_RS18375 PF05658 Head domain of trimeric autotransporter adhesin AMD12_RS18375 PF13018 Extended Signal Peptide of Type V secretion system AMD12_RS18375 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD12_RS18375 PF03895 YadA-like membrane anchor domain AMD12_RS18380 PF00082 Subtilase family AMD12_RS18380 PF04151 Bacterial pre-peptidase C-terminal domain AMD12_RS18385 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD12_RS18385 PF05658 Head domain of trimeric autotransporter adhesin AMD12_RS18385 PF03895 YadA-like membrane anchor domain AMD12_RS18385 PF13018 Extended Signal Peptide of Type V secretion system AMD12_RS18395 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMD12_RS18395 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMD12_RS18395 PF02769 AIR synthase related protein, C-terminal domain AMD12_RS18400 PF13098 Thioredoxin-like domain AMD12_RS18400 PF10411 Disulfide bond isomerase protein N-terminus AMD12_RS18405 PF02899 Phage integrase, N-terminal SAM-like domain AMD12_RS18405 PF00589 Phage integrase family AMD12_RS18420 PF03739 Lipopolysaccharide export system permease LptF/LptG AMD12_RS18430 PF00883 Cytosol aminopeptidase family, catalytic domain AMD12_RS18430 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD12_RS18445 PF10458 Valyl tRNA synthetase tRNA binding arm AMD12_RS18445 PF08264 Anticodon-binding domain of tRNA AMD12_RS18445 PF00133 tRNA synthetases class I (I, L, M and V) AMD12_RS18450 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS18450 PF00593 TonB dependent receptor AMD12_RS18455 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AMD12_RS18455 PF01464 Transglycosylase SLT domain AMD12_RS18460 PF00544 Pectate lyase AMD12_RS18475 PF01066 CDP-alcohol phosphatidyltransferase AMD12_RS18485 PF03129 Anticodon binding domain AMD12_RS18485 PF04073 Aminoacyl-tRNA editing domain AMD12_RS18485 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD12_RS18490 PF00816 H-NS histone family AMD12_RS18500 PF02405 Permease MlaE AMD12_RS18505 PF00005 ABC transporter AMD12_RS18510 PF03886 ABC-type transport auxiliary lipoprotein component AMD12_RS18510 PF02470 MlaD protein AMD12_RS18530 PF05045 Rhamnan synthesis protein F AMD12_RS18530 PF14307 Glycosyltransferase WbsX AMD12_RS18535 PF01144 Coenzyme A transferase AMD12_RS18540 PF01144 Coenzyme A transferase AMD12_RS18545 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD12_RS18545 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD12_RS18545 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD12_RS18545 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD12_RS18550 PF00483 Nucleotidyl transferase AMD12_RS18550 PF01050 Mannose-6-phosphate isomerase AMD12_RS18555 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD12_RS18555 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD12_RS18555 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD12_RS18560 PF04321 RmlD substrate binding domain AMD12_RS18565 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMD12_RS18570 PF00483 Nucleotidyl transferase AMD12_RS18575 PF16363 GDP-mannose 4,6 dehydratase AMD12_RS18580 PF01012 Electron transfer flavoprotein domain AMD12_RS18585 PF00766 Electron transfer flavoprotein FAD-binding domain AMD12_RS18585 PF01012 Electron transfer flavoprotein domain AMD12_RS18595 PF01040 UbiA prenyltransferase family AMD12_RS18600 PF04030 D-arabinono-1,4-lactone oxidase AMD12_RS18600 PF01565 FAD binding domain AMD12_RS18605 PF00106 short chain dehydrogenase AMD12_RS18615 PF01370 NAD dependent epimerase/dehydratase family AMD12_RS18620 PF01593 Flavin containing amine oxidoreductase AMD12_RS18645 PF00535 Glycosyl transferase family 2 AMD12_RS18655 PF00005 ABC transporter AMD12_RS18655 PF14524 Wzt C-terminal domain AMD12_RS18665 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD12_RS18670 PF00571 CBS domain AMD12_RS18670 PF00291 Pyridoxal-phosphate dependent enzyme AMD12_RS18690 PF00437 Type II/IV secretion system protein AMD12_RS18700 PF02798 Glutathione S-transferase, N-terminal domain AMD12_RS18700 PF14497 Glutathione S-transferase, C-terminal domain AMD12_RS18710 PF00271 Helicase conserved C-terminal domain AMD12_RS18710 PF00270 DEAD/DEAH box helicase AMD12_RS18720 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS18720 PF00593 TonB dependent receptor AMD12_RS18725 PF01242 6-pyruvoyl tetrahydropterin synthase AMD12_RS18745 PF13185 GAF domain AMD12_RS18755 PF00756 Putative esterase AMD12_RS18760 PF00593 TonB dependent receptor AMD12_RS18760 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS18765 PF13419 Haloacid dehalogenase-like hydrolase AMD12_RS18770 PF00817 impB/mucB/samB family AMD12_RS18770 PF11799 impB/mucB/samB family C-terminal domain AMD12_RS18775 PF07977 FabA-like domain AMD12_RS18780 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD12_RS18780 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD12_RS18790 PF01432 Peptidase family M3 AMD12_RS18805 PF00394 Multicopper oxidase AMD12_RS18805 PF07732 Multicopper oxidase AMD12_RS18805 PF07731 Multicopper oxidase AMD12_RS18810 PF05275 Copper resistance protein B precursor (CopB) AMD12_RS18815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD12_RS18840 PF01380 SIS domain AMD12_RS18845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD12_RS18850 PF12704 MacB-like periplasmic core domain AMD12_RS18850 PF02687 FtsX-like permease family AMD12_RS18850 PF00005 ABC transporter AMD12_RS18855 PF00005 ABC transporter AMD12_RS18855 PF12704 MacB-like periplasmic core domain AMD12_RS18855 PF02687 FtsX-like permease family AMD12_RS18860 PF12704 MacB-like periplasmic core domain AMD12_RS18860 PF02687 FtsX-like permease family AMD12_RS18875 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS18875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS18880 PF12804 MobA-like NTP transferase domain AMD12_RS18880 PF14602 Hexapeptide repeat of succinyl-transferase AMD12_RS18880 PF00132 Bacterial transferase hexapeptide (six repeats) AMD12_RS18895 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMD12_RS18895 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMD12_RS18900 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD12_RS18900 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD12_RS18905 PF00231 ATP synthase AMD12_RS18910 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD12_RS18910 PF00306 ATP synthase alpha/beta chain, C terminal domain AMD12_RS18910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD12_RS18915 PF00213 ATP synthase delta (OSCP) subunit AMD12_RS18920 PF00430 ATP synthase B/B' CF(0) AMD12_RS18925 PF00137 ATP synthase subunit C AMD12_RS18930 PF00119 ATP synthase A chain AMD12_RS18950 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD12_RS18950 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD12_RS18960 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD12_RS18960 PF00364 Biotin-requiring enzyme AMD12_RS18960 PF02817 e3 binding domain AMD12_RS19000 PF03180 NLPA lipoprotein AMD12_RS19005 PF00528 Binding-protein-dependent transport system inner membrane component AMD12_RS19010 PF00005 ABC transporter AMD12_RS19010 PF09383 NIL domain AMD12_RS19015 PF00892 EamA-like transporter family AMD12_RS19020 PF04461 Protein of unknown function (DUF520) AMD12_RS19030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS19030 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS19030 PF00072 Response regulator receiver domain AMD12_RS19030 PF00989 PAS fold AMD12_RS19030 PF01627 Hpt domain AMD12_RS19030 PF18415 Histidine kinase receptor ArcB trans-membrane domain AMD12_RS19055 PF13419 Haloacid dehalogenase-like hydrolase AMD12_RS19060 PF01479 S4 domain AMD12_RS19060 PF00849 RNA pseudouridylate synthase AMD12_RS19065 PF05175 Methyltransferase small domain AMD12_RS19065 PF08468 Methyltransferase small domain N-terminal AMD12_RS19075 PF07995 Glucose / Sorbosone dehydrogenase AMD12_RS19085 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS19085 PF00989 PAS fold AMD12_RS19085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS19105 PF00842 Alanine racemase, C-terminal domain AMD12_RS19105 PF01168 Alanine racemase, N-terminal domain AMD12_RS19110 PF01266 FAD dependent oxidoreductase AMD12_RS19115 PF01037 Lrp/AsnC ligand binding domain AMD12_RS19125 PF01641 SelR domain AMD12_RS19135 PF01618 MotA/TolQ/ExbB proton channel family AMD12_RS19140 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMD12_RS19140 PF00691 OmpA family AMD12_RS19165 PF01061 ABC-2 type transporter AMD12_RS19170 PF00005 ABC transporter AMD12_RS19175 PF00999 Sodium/hydrogen exchanger family AMD12_RS19180 PF02469 Fasciclin domain AMD12_RS19185 PF03167 Uracil DNA glycosylase superfamily AMD12_RS19195 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD12_RS19205 PF03466 LysR substrate binding domain AMD12_RS19205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS19210 PF03358 NADPH-dependent FMN reductase AMD12_RS19215 PF00248 Aldo/keto reductase family AMD12_RS19245 PF13520 Amino acid permease AMD12_RS19255 PF00072 Response regulator receiver domain AMD12_RS19255 PF04397 LytTr DNA-binding domain AMD12_RS19275 PF05974 Domain of unknown function (DUF892) AMD12_RS19280 PF05067 Manganese containing catalase AMD12_RS19300 PF03705 CheR methyltransferase, all-alpha domain AMD12_RS19300 PF01739 CheR methyltransferase, SAM binding domain AMD12_RS19300 PF01339 CheB methylesterase AMD12_RS19300 PF08448 PAS fold AMD12_RS19315 PF00158 Sigma-54 interaction domain AMD12_RS19315 PF00072 Response regulator receiver domain AMD12_RS19315 PF02954 Bacterial regulatory protein, Fis family AMD12_RS19325 PF01654 Cytochrome bd terminal oxidase subunit I AMD12_RS19330 PF02322 Cytochrome bd terminal oxidase subunit II AMD12_RS19350 PF16363 GDP-mannose 4,6 dehydratase AMD12_RS19360 PF03275 UDP-galactopyranose mutase AMD12_RS19370 PF00005 ABC transporter AMD12_RS19370 PF00664 ABC transporter transmembrane region AMD12_RS19385 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS19385 PF13823 Alcohol dehydrogenase GroES-associated AMD12_RS19385 PF00107 Zinc-binding dehydrogenase AMD12_RS19430 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS19430 PF00593 TonB dependent receptor AMD12_RS19445 PF00005 ABC transporter AMD12_RS19455 PF03466 LysR substrate binding domain AMD12_RS19455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS19460 PF01042 Endoribonuclease L-PSP AMD12_RS19490 PF02203 Tar ligand binding domain homologue AMD12_RS19490 PF00672 HAMP domain AMD12_RS19490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD12_RS19510 PF02525 Flavodoxin-like fold AMD12_RS19550 PF00557 Metallopeptidase family M24 AMD12_RS19570 PF04539 Sigma-70 region 3 AMD12_RS19570 PF04545 Sigma-70, region 4 AMD12_RS19570 PF00140 Sigma-70 factor, region 1.2 AMD12_RS19570 PF04542 Sigma-70 region 2 AMD12_RS19570 PF03979 Sigma-70 factor, region 1.1 AMD12_RS19570 PF04546 Sigma-70, non-essential region AMD12_RS19575 PF02580 D-Tyr-tRNA(Tyr) deacylase AMD12_RS19580 PF03279 Bacterial lipid A biosynthesis acyltransferase AMD12_RS19595 PF00925 GTP cyclohydrolase II AMD12_RS19615 PF00535 Glycosyl transferase family 2 AMD12_RS19630 PF01029 NusB family AMD12_RS19630 PF01189 16S rRNA methyltransferase RsmB/F AMD12_RS19635 PF02911 Formyl transferase, C-terminal domain AMD12_RS19635 PF00551 Formyl transferase AMD12_RS19640 PF01327 Polypeptide deformylase AMD12_RS19645 PF01476 LysM domain AMD12_RS19650 PF02481 DNA recombination-mediator protein A AMD12_RS19650 PF17782 DprA winged helix domain AMD12_RS19655 PF04361 Protein of unknown function (DUF494) AMD12_RS19660 PF00114 Pilin (bacterial filament) AMD12_RS19660 PF07963 Prokaryotic N-terminal methylation motif AMD12_RS19670 PF01131 DNA topoisomerase AMD12_RS19670 PF01751 Toprim domain AMD12_RS19670 PF13368 Topoisomerase C-terminal repeat AMD12_RS19675 PF01300 Telomere recombination AMD12_RS19700 PF01343 Peptidase family S49 AMD12_RS19705 PF01554 MatE AMD12_RS19725 PF00271 Helicase conserved C-terminal domain AMD12_RS19725 PF17764 3′ DNA-binding domain (3′BD) AMD12_RS19725 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMD12_RS19725 PF18074 Primosomal protein N C-terminal domain AMD12_RS19725 PF00270 DEAD/DEAH box helicase AMD12_RS19730 PF13417 Glutathione S-transferase, N-terminal domain AMD12_RS19730 PF00043 Glutathione S-transferase, C-terminal domain AMD12_RS19745 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD12_RS19750 PF03458 UPF0126 domain AMD12_RS19755 PF04542 Sigma-70 region 2 AMD12_RS19755 PF04545 Sigma-70, region 4 AMD12_RS19760 PF03167 Uracil DNA glycosylase superfamily AMD12_RS19765 PF00072 Response regulator receiver domain AMD12_RS19770 PF18075 FtsX extracellular domain AMD12_RS19775 PF00005 ABC transporter AMD12_RS19780 PF00271 Helicase conserved C-terminal domain AMD12_RS19780 PF12300 ATP-dependent RNA helicase RhlB AMD12_RS19780 PF00270 DEAD/DEAH box helicase AMD12_RS19785 PF00085 Thioredoxin AMD12_RS19790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD12_RS19790 PF07498 Rho termination factor, N-terminal domain AMD12_RS19790 PF07497 Rho termination factor, RNA-binding domain AMD12_RS19795 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AMD12_RS19800 PF03466 LysR substrate binding domain AMD12_RS19800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS19810 PF03971 Monomeric isocitrate dehydrogenase AMD12_RS19825 PF09704 CRISPR-associated protein (Cas_Cas5) AMD12_RS19845 PF01867 CRISPR associated protein Cas1 AMD12_RS19850 PF09827 CRISPR associated protein Cas2 AMD12_RS19860 PF04972 BON domain AMD12_RS19860 PF01476 LysM domain AMD12_RS19865 PF14489 QueF-like protein AMD12_RS19865 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMD12_RS19870 PF01546 Peptidase family M20/M25/M40 AMD12_RS19870 PF07687 Peptidase dimerisation domain AMD12_RS19875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD12_RS19880 PF00873 AcrB/AcrD/AcrF family AMD12_RS19885 PF00873 AcrB/AcrD/AcrF family AMD12_RS19890 PF07063 Domain of unknown function (DUF1338) AMD12_RS19930 PF01427 D-ala-D-ala dipeptidase AMD12_RS19935 PF01510 N-acetylmuramoyl-L-alanine amidase AMD12_RS19945 PF13378 Enolase C-terminal domain-like AMD12_RS19945 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD12_RS19955 PF13520 Amino acid permease AMD12_RS19970 PF05360 yiaA/B two helix domain AMD12_RS19975 PF07995 Glucose / Sorbosone dehydrogenase AMD12_RS19980 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD12_RS19980 PF14310 Fibronectin type III-like domain AMD12_RS19980 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD12_RS19985 PF02152 Dihydroneopterin aldolase AMD12_RS19990 PF00814 Glycoprotease family AMD12_RS19995 PF01165 Ribosomal protein S21 AMD12_RS20000 PF09424 Yqey-like protein AMD12_RS20005 PF03631 Virulence factor BrkB AMD12_RS20010 PF10410 DnaB-helicase binding domain of primase AMD12_RS20010 PF08278 DNA primase DnaG DnaB-binding AMD12_RS20010 PF08275 DNA primase catalytic core, N-terminal domain AMD12_RS20010 PF01807 CHC2 zinc finger AMD12_RS20015 PF13593 SBF-like CPA transporter family (DUF4137) AMD12_RS20025 PF01040 UbiA prenyltransferase family AMD12_RS20050 PF00510 Cytochrome c oxidase subunit III AMD12_RS20055 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMD12_RS20060 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD12_RS20065 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMD12_RS20065 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMD12_RS20075 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMD12_RS20075 PF14850 DNA-binding domain of Proline dehydrogenase AMD12_RS20075 PF01619 Proline dehydrogenase AMD12_RS20075 PF00171 Aldehyde dehydrogenase family AMD12_RS20110 PF00579 tRNA synthetases class I (W and Y) AMD12_RS20115 PF04225 Opacity-associated protein A LysM-like domain AMD12_RS20115 PF01551 Peptidase family M23 AMD12_RS20120 PF03702 Anhydro-N-acetylmuramic acid kinase AMD12_RS20130 PF07690 Major Facilitator Superfamily AMD12_RS20135 PF03372 Endonuclease/Exonuclease/phosphatase family AMD12_RS20140 PF00156 Phosphoribosyl transferase domain AMD12_RS20150 PF13614 AAA domain AMD12_RS20155 PF17762 HTH domain found in ParB protein AMD12_RS20155 PF02195 ParB-like nuclease domain AMD12_RS20165 PF01370 NAD dependent epimerase/dehydratase family AMD12_RS20170 PF00535 Glycosyl transferase family 2 AMD12_RS20190 PF00692 dUTPase AMD12_RS20195 PF04127 DNA / pantothenate metabolism flavoprotein AMD12_RS20195 PF02441 Flavoprotein AMD12_RS20200 PF04002 RadC-like JAB domain AMD12_RS20205 PF03485 Arginyl tRNA synthetase N terminal domain AMD12_RS20205 PF00750 tRNA synthetases class I (R) AMD12_RS20205 PF05746 DALR anticodon binding domain AMD12_RS20220 PF00106 short chain dehydrogenase AMD12_RS20225 PF01757 Acyltransferase family AMD12_RS20230 PF03033 Glycosyltransferase family 28 N-terminal domain AMD12_RS20235 PF00501 AMP-binding enzyme AMD12_RS20235 PF13193 AMP-binding enzyme C-terminal domain AMD12_RS20235 PF00668 Condensation domain AMD12_RS20235 PF00550 Phosphopantetheine attachment site AMD12_RS20235 PF00975 Thioesterase domain AMD12_RS20245 PF17944 Arginine decarboxylase C-terminal helical extension AMD12_RS20245 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD12_RS20245 PF17810 Arginine decarboxylase helical bundle domain AMD12_RS20250 PF17284 Spermidine synthase tetramerisation domain AMD12_RS20280 PF00543 Nitrogen regulatory protein P-II AMD12_RS20285 PF04380 Membrane fusogenic activity AMD12_RS20290 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMD12_RS20290 PF01078 Magnesium chelatase, subunit ChlI AMD12_RS20325 PF13361 UvrD-like helicase C-terminal domain AMD12_RS20325 PF00580 UvrD/REP helicase N-terminal domain AMD12_RS20325 PF00570 HRDC domain AMD12_RS20400 PF00563 EAL domain AMD12_RS20400 PF12792 CSS motif domain associated with EAL AMD12_RS20405 PF00487 Fatty acid desaturase AMD12_RS20410 PF00175 Oxidoreductase NAD-binding domain AMD12_RS20410 PF00970 Oxidoreductase FAD-binding domain AMD12_RS20410 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD12_RS20415 PF00440 Bacterial regulatory proteins, tetR family AMD12_RS20435 PF01139 tRNA-splicing ligase RtcB AMD12_RS20475 PF01370 NAD dependent epimerase/dehydratase family AMD12_RS20475 PF08338 Domain of unknown function (DUF1731) AMD12_RS20480 PF00072 Response regulator receiver domain AMD12_RS20480 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS20485 PF08521 Two-component sensor kinase N-terminal AMD12_RS20485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS20485 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS20505 PF00595 PDZ domain AMD12_RS20525 PF01594 AI-2E family transporter AMD12_RS20530 PF13419 Haloacid dehalogenase-like hydrolase AMD12_RS20535 PF00883 Cytosol aminopeptidase family, catalytic domain AMD12_RS20535 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD12_RS20545 PF08281 Sigma-70, region 4 AMD12_RS20545 PF04542 Sigma-70 region 2 AMD12_RS20550 PF00199 Catalase AMD12_RS20565 PF00072 Response regulator receiver domain AMD12_RS20565 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS20570 PF07730 Histidine kinase AMD12_RS20575 PF13533 Biotin-lipoyl like AMD12_RS20580 PF00005 ABC transporter AMD12_RS20605 PF00892 EamA-like transporter family AMD12_RS20620 PF00753 Metallo-beta-lactamase superfamily AMD12_RS20625 PF00579 tRNA synthetases class I (W and Y) AMD12_RS20630 PF05532 CsbD-like AMD12_RS20645 PF00491 Arginase family AMD12_RS20670 PF02223 Thymidylate kinase AMD12_RS20685 PF03309 Type III pantothenate kinase AMD12_RS20690 PF08279 HTH domain AMD12_RS20690 PF03099 Biotin/lipoate A/B protein ligase family AMD12_RS20690 PF02237 Biotin protein ligase C terminal domain AMD12_RS20700 PF06167 Glucose-regulated metallo-peptidase M90 AMD12_RS20715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS20720 PF00486 Transcriptional regulatory protein, C terminal AMD12_RS20720 PF00072 Response regulator receiver domain AMD12_RS20730 PF01207 Dihydrouridine synthase (Dus) AMD12_RS20745 PF00199 Catalase AMD12_RS20745 PF06628 Catalase-related immune-responsive AMD12_RS20750 PF06733 DEAD_2 AMD12_RS20750 PF13307 Helicase C-terminal domain AMD12_RS20765 PF08501 Shikimate dehydrogenase substrate binding domain AMD12_RS20765 PF01488 Shikimate / quinate 5-dehydrogenase AMD12_RS20765 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMD12_RS20775 PF00175 Oxidoreductase NAD-binding domain AMD12_RS20775 PF00667 FAD binding domain AMD12_RS20775 PF00258 Flavodoxin AMD12_RS20785 PF03466 LysR substrate binding domain AMD12_RS20785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS20795 PF00490 Delta-aminolevulinic acid dehydratase AMD12_RS20820 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD12_RS20820 PF00326 Prolyl oligopeptidase family AMD12_RS20825 PF02798 Glutathione S-transferase, N-terminal domain AMD12_RS20825 PF00043 Glutathione S-transferase, C-terminal domain AMD12_RS20850 PF04820 Tryptophan halogenase AMD12_RS20865 PF00005 ABC transporter AMD12_RS20875 PF01381 Helix-turn-helix AMD12_RS20885 PF01229 Glycosyl hydrolases family 39 AMD12_RS20890 PF02583 Metal-sensitive transcriptional repressor AMD12_RS20895 PF16916 Dimerisation domain of Zinc Transporter AMD12_RS20895 PF01545 Cation efflux family AMD12_RS20905 PF00593 TonB dependent receptor AMD12_RS20905 PF07715 TonB-dependent Receptor Plug Domain AMD12_RS20915 PF01965 DJ-1/PfpI family AMD12_RS20915 PF12833 Helix-turn-helix domain AMD12_RS20920 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD12_RS20920 PF00175 Oxidoreductase NAD-binding domain AMD12_RS20920 PF00970 Oxidoreductase FAD-binding domain AMD12_RS20925 PF00005 ABC transporter AMD12_RS20930 PF01061 ABC-2 type transporter AMD12_RS20940 PF02558 Ketopantoate reductase PanE/ApbA AMD12_RS20940 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMD12_RS20970 PF00268 Ribonucleotide reductase, small chain AMD12_RS20975 PF00317 Ribonucleotide reductase, all-alpha domain AMD12_RS20975 PF02867 Ribonucleotide reductase, barrel domain AMD12_RS20975 PF03477 ATP cone domain AMD12_RS20985 PF00583 Acetyltransferase (GNAT) family AMD12_RS20985 PF13380 CoA binding domain AMD12_RS20985 PF13607 Succinyl-CoA ligase like flavodoxin domain AMD12_RS20990 PF03448 MgtE intracellular N domain AMD12_RS20990 PF01769 Divalent cation transporter AMD12_RS20990 PF00571 CBS domain AMD12_RS21000 PF02254 TrkA-N domain AMD12_RS21000 PF00999 Sodium/hydrogen exchanger family AMD12_RS21005 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD12_RS21005 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD12_RS21010 PF00723 Glycosyl hydrolases family 15 AMD12_RS21025 PF05166 YcgL domain AMD12_RS21030 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD12_RS21030 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD12_RS21040 PF00535 Glycosyl transferase family 2 AMD12_RS21095 PF07977 FabA-like domain AMD12_RS21100 PF01553 Acyltransferase AMD12_RS21110 PF00550 Phosphopantetheine attachment site AMD12_RS21115 PF04820 Tryptophan halogenase AMD12_RS21135 PF07676 WD40-like Beta Propeller Repeat AMD12_RS21135 PF00326 Prolyl oligopeptidase family AMD12_RS21150 PF01218 Coproporphyrinogen III oxidase AMD12_RS21155 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD12_RS21155 PF00476 DNA polymerase family A AMD12_RS21155 PF01612 3'-5' exonuclease AMD12_RS21155 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD12_RS21165 PF06812 ImpA, N-terminal, type VI secretion system AMD12_RS21185 PF03793 PASTA domain AMD12_RS21185 PF00069 Protein kinase domain AMD12_RS21200 PF06744 Type VI secretion protein IcmF C-terminal AMD12_RS21200 PF14331 ImcF-related N-terminal domain AMD12_RS21200 PF06761 Intracellular multiplication and human macrophage-killing AMD12_RS21210 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AMD12_RS21225 PF04717 Type VI secretion system, phage-baseplate injector AMD12_RS21240 PF03793 PASTA domain AMD12_RS21240 PF00069 Protein kinase domain AMD12_RS21250 PF04542 Sigma-70 region 2 AMD12_RS21250 PF08281 Sigma-70, region 4 AMD12_RS21265 PF00328 Histidine phosphatase superfamily (branch 2) AMD12_RS21295 PF00004 ATPase family associated with various cellular activities (AAA) AMD12_RS21295 PF10431 C-terminal, D2-small domain, of ClpB protein AMD12_RS21295 PF07724 AAA domain (Cdc48 subfamily) AMD12_RS21295 PF17871 AAA lid domain AMD12_RS21305 PF05947 Type VI secretion system, TssF AMD12_RS21310 PF04965 Gene 25-like lysozyme AMD12_RS21315 PF07024 ImpE protein AMD12_RS21320 PF05638 Type VI secretion system effector, Hcp AMD12_RS21325 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMD12_RS21330 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMD12_RS21345 PF12464 Maltose acetyltransferase AMD12_RS21345 PF14602 Hexapeptide repeat of succinyl-transferase AMD12_RS21350 PF13361 UvrD-like helicase C-terminal domain AMD12_RS21350 PF00580 UvrD/REP helicase N-terminal domain AMD12_RS21365 PF13091 PLD-like domain AMD12_RS21365 PF13396 Phospholipase_D-nuclease N-terminal AMD12_RS21370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS21370 PF03466 LysR substrate binding domain AMD12_RS21375 PF03737 Aldolase/RraA AMD12_RS21380 PF04303 PrpF protein AMD12_RS21385 PF04909 Amidohydrolase AMD12_RS21390 PF00471 Ribosomal protein L33 AMD12_RS21395 PF00830 Ribosomal L28 family AMD12_RS21400 PF00873 AcrB/AcrD/AcrF family AMD12_RS21405 PF13533 Biotin-lipoyl like AMD12_RS21425 PF02527 rRNA small subunit methyltransferase G AMD12_RS21430 PF09423 PhoD-like phosphatase AMD12_RS21430 PF16655 PhoD-like phosphatase, N-terminal domain AMD12_RS21435 PF09423 PhoD-like phosphatase AMD12_RS21435 PF16655 PhoD-like phosphatase, N-terminal domain AMD12_RS21440 PF01648 4'-phosphopantetheinyl transferase superfamily AMD12_RS21450 PF04226 Transglycosylase associated protein AMD12_RS21460 PF03372 Endonuclease/Exonuclease/phosphatase family AMD12_RS21465 PF00480 ROK family AMD12_RS21475 PF09312 SurA N-terminal domain AMD12_RS21485 PF00474 Sodium:solute symporter family AMD12_RS21490 PF04341 Protein of unknown function, DUF485 AMD12_RS21500 PF00501 AMP-binding enzyme AMD12_RS21500 PF16177 Acetyl-coenzyme A synthetase N-terminus AMD12_RS21500 PF13193 AMP-binding enzyme C-terminal domain AMD12_RS21505 PF00196 Bacterial regulatory proteins, luxR family AMD12_RS21505 PF00072 Response regulator receiver domain AMD12_RS21530 PF04616 Glycosyl hydrolases family 43 AMD12_RS21530 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD12_RS21540 PF00248 Aldo/keto reductase family AMD12_RS21555 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD12_RS21560 PF13378 Enolase C-terminal domain-like AMD12_RS21560 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD12_RS21570 PF05336 L-rhamnose mutarotase AMD12_RS21575 PF07690 Major Facilitator Superfamily AMD12_RS21580 PF09339 IclR helix-turn-helix domain AMD12_RS21580 PF01614 Bacterial transcriptional regulator AMD12_RS21585 PF02659 Putative manganese efflux pump AMD12_RS21590 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS21590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS21605 PF06165 Glycosyltransferase family 36 AMD12_RS21605 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AMD12_RS21620 PF01011 PQQ enzyme repeat AMD12_RS21620 PF13570 PQQ-like domain AMD12_RS21620 PF13360 PQQ-like domain AMD12_RS21640 PF04357 TamB, inner membrane protein subunit of TAM complex AMD12_RS21645 PF17243 POTRA domain TamA domain 1 AMD12_RS21645 PF01103 Surface antigen AMD12_RS21680 PF02092 Glycyl-tRNA synthetase beta subunit AMD12_RS21680 PF05746 DALR anticodon binding domain AMD12_RS21685 PF02091 Glycyl-tRNA synthetase alpha subunit AMD12_RS21690 PF00437 Type II/IV secretion system protein AMD12_RS21690 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD12_RS21700 PF00117 Glutamine amidotransferase class-I AMD12_RS21700 PF00958 GMP synthase C terminal domain AMD12_RS21710 PF00902 Sec-independent protein translocase protein (TatC) AMD12_RS21715 PF02416 mttA/Hcf106 family AMD12_RS21720 PF02416 mttA/Hcf106 family AMD12_RS21730 PF00762 Ferrochelatase AMD12_RS21735 PF12697 Alpha/beta hydrolase family AMD12_RS21750 PF04381 Putative exonuclease, RdgC AMD12_RS21755 PF01171 PP-loop family AMD12_RS21765 PF00356 Bacterial regulatory proteins, lacI family AMD12_RS21770 PF07488 Glycosyl hydrolase family 67 middle domain AMD12_RS21770 PF07477 Glycosyl hydrolase family 67 C-terminus AMD12_RS21770 PF03648 Glycosyl hydrolase family 67 N-terminus AMD12_RS21780 PF13378 Enolase C-terminal domain-like AMD12_RS21780 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD12_RS21785 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD12_RS21785 PF04616 Glycosyl hydrolases family 43 AMD12_RS21790 PF14310 Fibronectin type III-like domain AMD12_RS21790 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD12_RS21790 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD12_RS21790 PF07691 PA14 domain AMD12_RS21795 PF01232 Mannitol dehydrogenase Rossmann domain AMD12_RS21795 PF08125 Mannitol dehydrogenase C-terminal domain AMD12_RS21820 PF00171 Aldehyde dehydrogenase family AMD12_RS21845 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD12_RS21845 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD12_RS21870 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD12_RS21875 PF00331 Glycosyl hydrolase family 10 AMD12_RS21880 PF16355 Domain of unknown function (DUF4982) AMD12_RS21880 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD12_RS21880 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMD12_RS21880 PF00703 Glycosyl hydrolases family 2 AMD12_RS21880 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD12_RS21885 PF02614 Glucuronate isomerase AMD12_RS21905 PF00331 Glycosyl hydrolase family 10 AMD12_RS21905 PF03422 Carbohydrate binding module (family 6) AMD12_RS21905 PF00553 Cellulose binding domain AMD12_RS21925 PF04616 Glycosyl hydrolases family 43 AMD12_RS21960 PF00698 Acyl transferase domain AMD12_RS21960 PF16197 Ketoacyl-synthetase C-terminal extension AMD12_RS21960 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS21960 PF00107 Zinc-binding dehydrogenase AMD12_RS21960 PF14765 Polyketide synthase dehydratase AMD12_RS21960 PF00550 Phosphopantetheine attachment site AMD12_RS21960 PF08659 KR domain AMD12_RS21960 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD12_RS21960 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD12_RS21965 PF01553 Acyltransferase AMD12_RS21975 PF00356 Bacterial regulatory proteins, lacI family AMD12_RS21995 PF04820 Tryptophan halogenase AMD12_RS22000 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD12_RS22005 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AMD12_RS22010 PF04337 Protein of unknown function, DUF480 AMD12_RS22025 PF00580 UvrD/REP helicase N-terminal domain AMD12_RS22025 PF13361 UvrD-like helicase C-terminal domain AMD12_RS22030 PF00265 Thymidine kinase AMD12_RS22035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS22035 PF00512 His Kinase A (phospho-acceptor) domain AMD12_RS22035 PF08446 PAS fold AMD12_RS22035 PF00360 Phytochrome region AMD12_RS22035 PF01590 GAF domain AMD12_RS22040 PF04349 Periplasmic glucan biosynthesis protein, MdoG AMD12_RS22050 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD12_RS22050 PF06827 Zinc finger found in FPG and IleRS AMD12_RS22050 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD12_RS22085 PF03594 Benzoate membrane transport protein AMD12_RS22090 PF01590 GAF domain AMD12_RS22090 PF00360 Phytochrome region AMD12_RS22090 PF13426 PAS domain AMD12_RS22090 PF08446 PAS fold AMD12_RS22095 PF01126 Heme oxygenase AMD12_RS22100 PF07690 Major Facilitator Superfamily AMD12_RS22105 PF01263 Aldose 1-epimerase AMD12_RS22115 PF02810 SEC-C motif AMD12_RS22120 PF01925 Sulfite exporter TauE/SafE AMD12_RS22140 PF01227 GTP cyclohydrolase I AMD12_RS22150 PF07869 Protein of unknown function (DUF1656) AMD12_RS22155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD12_RS22155 PF00529 HlyD membrane-fusion protein of T1SS AMD12_RS22160 PF02321 Outer membrane efflux protein AMD12_RS22165 PF04632 Fusaric acid resistance protein family AMD12_RS22170 PF00083 Sugar (and other) transporter AMD12_RS22175 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AMD12_RS22180 PF13396 Phospholipase_D-nuclease N-terminal AMD12_RS22180 PF13091 PLD-like domain AMD12_RS22205 PF01850 PIN domain AMD12_RS22230 PF00849 RNA pseudouridylate synthase AMD12_RS22265 PF02785 Biotin carboxylase C-terminal domain AMD12_RS22265 PF00289 Biotin carboxylase, N-terminal domain AMD12_RS22265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD12_RS22270 PF01425 Amidase AMD12_RS22300 PF13538 UvrD-like helicase C-terminal domain AMD12_RS22305 PF00580 UvrD/REP helicase N-terminal domain AMD12_RS22305 PF13361 UvrD-like helicase C-terminal domain AMD12_RS22305 PF12705 PD-(D/E)XK nuclease superfamily AMD12_RS22310 PF17946 RecC C-terminal domain AMD12_RS22325 PF00005 ABC transporter AMD12_RS22330 PF02405 Permease MlaE AMD12_RS22335 PF02470 MlaD protein AMD12_RS22340 PF05494 MlaC protein AMD12_RS22350 PF04333 MlaA lipoprotein AMD12_RS22360 PF00255 Glutathione peroxidase AMD12_RS22370 PF02646 RmuC family AMD12_RS22375 PF00107 Zinc-binding dehydrogenase AMD12_RS22375 PF08240 Alcohol dehydrogenase GroES-like domain AMD12_RS22380 PF03466 LysR substrate binding domain AMD12_RS22380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD12_RS22390 PF00043 Glutathione S-transferase, C-terminal domain AMD12_RS22390 PF13417 Glutathione S-transferase, N-terminal domain AMD12_RS22400 PF13520 Amino acid permease AMD12_RS22405 PF07971 Glycosyl hydrolase family 92 AMD12_RS22405 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD12_RS22410 PF10947 Protein of unknown function (DUF2628) AMD12_RS22415 PF00990 Diguanylate cyclase, GGDEF domain AMD12_RS22420 PF17853 GGDEF-like domain AMD12_RS22420 PF13556 PucR C-terminal helix-turn-helix domain AMD12_RS22420 PF05651 Putative sugar diacid recognition AMD12_RS22425 PF02595 Glycerate kinase family AMD12_RS22430 PF07690 Major Facilitator Superfamily AMD12_RS22445 PF17785 PUA-like domain AMD12_RS22445 PF10672 S-adenosylmethionine-dependent methyltransferase AMD12_RS22450 PF03741 Integral membrane protein TerC family AMD12_RS22455 PF01694 Rhomboid family AMD12_RS22460 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD12_RS22470 PF01569 PAP2 superfamily AMD12_RS22475 PF10396 GTP-binding protein TrmE N-terminus AMD12_RS22475 PF12631 MnmE helical domain AMD12_RS22475 PF01926 50S ribosome-binding GTPase AMD12_RS22480 PF01522 Polysaccharide deacetylase AMD12_RS22490 PF02096 60Kd inner membrane protein AMD12_RS22490 PF14849 YidC periplasmic domain AMD12_RS22495 PF00825 Ribonuclease P AMD12_RS22500 PF00468 Ribosomal protein L34 AMD12_RS22540 PF02810 SEC-C motif AMD12_RS22540 PF03695 Uncharacterised protein family (UPF0149) AMD12_RS22625 PF07516 SecA Wing and Scaffold domain AMD12_RS22625 PF01043 SecA preprotein cross-linking domain AMD12_RS22625 PF07517 SecA DEAD-like domain AMD12_RS22625 PF02810 SEC-C motif AMD12_RS22860 PF00145 C-5 cytosine-specific DNA methylase AMD12_RS23090 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AMD12_RS23090 PF18766 SWI2/SNF2 ATPase AMD12_RS23090 PF11867 Domain of unknown function (DUF3387) AMD12_RS23240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD12_RS23240 PF02770 Acyl-CoA dehydrogenase, middle domain AMD12_RS23240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD12_RS23245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD12_RS23245 PF02770 Acyl-CoA dehydrogenase, middle domain AMD12_RS23245 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD12_RS23250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD12_RS23250 PF02770 Acyl-CoA dehydrogenase, middle domain AMD12_RS23250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD12_RS23420 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AMD12_RS23480 PF00589 Phage integrase family AMD12_RS23565 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD12_RS23925 PF08042 PqqA family AMD12_RS23945 PF04185 Phosphoesterase family AMD12_RS23945 PF05506 Domain of unknown function (DUF756) AMD12_RS24070 PF12146 Serine aminopeptidase, S33 AMD12_RS24240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD12_RS24240 PF00672 HAMP domain AMD12_RS24240 PF06580 Histidine kinase AMD12_RS24240 PF02743 Cache domain AMD12_RS24320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD12_RS24320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD12_RS24320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD12_RS24320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD12_RS24340 PF02463 RecF/RecN/SMC N terminal domain AMD12_RS24385 PF06628 Catalase-related immune-responsive AMD12_RS24385 PF00199 Catalase