locus-tag class description AMD09_RS00030 PF01751 Toprim domain AMD09_RS00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS00030 PF18053 DNA gyrase B subunit insert domain AMD09_RS00030 PF00986 DNA gyrase B subunit, carboxyl terminus AMD09_RS00030 PF00204 DNA gyrase B AMD09_RS00095 PF00712 DNA polymerase III beta subunit, N-terminal domain AMD09_RS00095 PF02768 DNA polymerase III beta subunit, C-terminal domain AMD09_RS00095 PF02767 DNA polymerase III beta subunit, central domain AMD09_RS00400 PF00308 Bacterial dnaA protein AMD09_RS00400 PF08299 Bacterial dnaA protein helix-turn-helix AMD09_RS00400 PF11638 DnaA N-terminal domain AMD09_RS00405 PF00712 DNA polymerase III beta subunit, N-terminal domain AMD09_RS00405 PF02767 DNA polymerase III beta subunit, central domain AMD09_RS00405 PF02768 DNA polymerase III beta subunit, C-terminal domain AMD09_RS00410 PF02463 RecF/RecN/SMC N terminal domain AMD09_RS00415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS00415 PF00204 DNA gyrase B AMD09_RS00415 PF01751 Toprim domain AMD09_RS00415 PF18053 DNA gyrase B subunit insert domain AMD09_RS00415 PF00986 DNA gyrase B subunit, carboxyl terminus AMD09_RS00425 PF01435 Peptidase family M48 AMD09_RS00435 PF03544 Gram-negative bacterial TonB protein C-terminal AMD09_RS00440 PF01618 MotA/TolQ/ExbB proton channel family AMD09_RS00445 PF02472 Biopolymer transport protein ExbD/TolR AMD09_RS00450 PF02472 Biopolymer transport protein ExbD/TolR AMD09_RS00455 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMD09_RS00465 PF13396 Phospholipase_D-nuclease N-terminal AMD09_RS00465 PF13091 PLD-like domain AMD09_RS00480 PF04055 Radical SAM superfamily AMD09_RS00490 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMD09_RS00505 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD09_RS00505 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD09_RS00510 PF13180 PDZ domain AMD09_RS00510 PF03572 Peptidase family S41 AMD09_RS00515 PF01551 Peptidase family M23 AMD09_RS00525 PF04389 Peptidase family M28 AMD09_RS00535 PF00150 Cellulase (glycosyl hydrolase family 5) AMD09_RS00540 PF00150 Cellulase (glycosyl hydrolase family 5) AMD09_RS00570 PF04616 Glycosyl hydrolases family 43 AMD09_RS00590 PF00331 Glycosyl hydrolase family 10 AMD09_RS00590 PF03422 Carbohydrate binding module (family 6) AMD09_RS00590 PF00553 Cellulose binding domain AMD09_RS00605 PF03422 Carbohydrate binding module (family 6) AMD09_RS00605 PF00331 Glycosyl hydrolase family 10 AMD09_RS00605 PF00553 Cellulose binding domain AMD09_RS00610 PF02614 Glucuronate isomerase AMD09_RS00615 PF00703 Glycosyl hydrolases family 2 AMD09_RS00615 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD09_RS00615 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD09_RS00615 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMD09_RS00615 PF16355 Domain of unknown function (DUF4982) AMD09_RS00620 PF00331 Glycosyl hydrolase family 10 AMD09_RS00625 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD09_RS00640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD09_RS00640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD09_RS00650 PF00202 Aminotransferase class-III AMD09_RS00665 PF00171 Aldehyde dehydrogenase family AMD09_RS00690 PF01232 Mannitol dehydrogenase Rossmann domain AMD09_RS00690 PF08125 Mannitol dehydrogenase C-terminal domain AMD09_RS00695 PF07691 PA14 domain AMD09_RS00695 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD09_RS00695 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD09_RS00695 PF14310 Fibronectin type III-like domain AMD09_RS00700 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD09_RS00700 PF04616 Glycosyl hydrolases family 43 AMD09_RS00705 PF13378 Enolase C-terminal domain-like AMD09_RS00705 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD09_RS00715 PF03648 Glycosyl hydrolase family 67 N-terminus AMD09_RS00715 PF07488 Glycosyl hydrolase family 67 middle domain AMD09_RS00715 PF07477 Glycosyl hydrolase family 67 C-terminus AMD09_RS00720 PF00356 Bacterial regulatory proteins, lacI family AMD09_RS00735 PF04381 Putative exonuclease, RdgC AMD09_RS00750 PF12697 Alpha/beta hydrolase family AMD09_RS00755 PF00762 Ferrochelatase AMD09_RS00765 PF02416 mttA/Hcf106 family AMD09_RS00770 PF02416 mttA/Hcf106 family AMD09_RS00775 PF00902 Sec-independent protein translocase protein (TatC) AMD09_RS00785 PF00117 Glutamine amidotransferase class-I AMD09_RS00785 PF00958 GMP synthase C terminal domain AMD09_RS00795 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD09_RS00795 PF00437 Type II/IV secretion system protein AMD09_RS00800 PF02091 Glycyl-tRNA synthetase alpha subunit AMD09_RS00805 PF05746 DALR anticodon binding domain AMD09_RS00805 PF02092 Glycyl-tRNA synthetase beta subunit AMD09_RS00830 PF17243 POTRA domain TamA domain 1 AMD09_RS00830 PF01103 Surface antigen AMD09_RS00835 PF04357 TamB, inner membrane protein subunit of TAM complex AMD09_RS00855 PF01011 PQQ enzyme repeat AMD09_RS00855 PF13360 PQQ-like domain AMD09_RS00855 PF13570 PQQ-like domain AMD09_RS00870 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain AMD09_RS00870 PF06165 Glycosyltransferase family 36 AMD09_RS00885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS00885 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS00890 PF02659 Putative manganese efflux pump AMD09_RS00895 PF09339 IclR helix-turn-helix domain AMD09_RS00895 PF01614 Bacterial transcriptional regulator AMD09_RS00900 PF07690 Major Facilitator Superfamily AMD09_RS00905 PF05336 L-rhamnose mutarotase AMD09_RS00915 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD09_RS00915 PF13378 Enolase C-terminal domain-like AMD09_RS00920 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD09_RS00935 PF00248 Aldo/keto reductase family AMD09_RS00945 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD09_RS00945 PF04616 Glycosyl hydrolases family 43 AMD09_RS00970 PF00072 Response regulator receiver domain AMD09_RS00970 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS00975 PF00501 AMP-binding enzyme AMD09_RS00975 PF13193 AMP-binding enzyme C-terminal domain AMD09_RS00975 PF16177 Acetyl-coenzyme A synthetase N-terminus AMD09_RS00985 PF04341 Protein of unknown function, DUF485 AMD09_RS00990 PF00474 Sodium:solute symporter family AMD09_RS01000 PF09312 SurA N-terminal domain AMD09_RS01010 PF00480 ROK family AMD09_RS01015 PF03372 Endonuclease/Exonuclease/phosphatase family AMD09_RS01025 PF04226 Transglycosylase associated protein AMD09_RS01035 PF01648 4'-phosphopantetheinyl transferase superfamily AMD09_RS01040 PF09423 PhoD-like phosphatase AMD09_RS01040 PF16655 PhoD-like phosphatase, N-terminal domain AMD09_RS01045 PF09423 PhoD-like phosphatase AMD09_RS01045 PF16655 PhoD-like phosphatase, N-terminal domain AMD09_RS01050 PF02527 rRNA small subunit methyltransferase G AMD09_RS01070 PF13533 Biotin-lipoyl like AMD09_RS01075 PF00873 AcrB/AcrD/AcrF family AMD09_RS01080 PF00830 Ribosomal L28 family AMD09_RS01085 PF00471 Ribosomal protein L33 AMD09_RS01090 PF04909 Amidohydrolase AMD09_RS01095 PF04303 PrpF protein AMD09_RS01100 PF03737 Aldolase/RraA AMD09_RS01105 PF03466 LysR substrate binding domain AMD09_RS01105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS01110 PF13091 PLD-like domain AMD09_RS01110 PF13396 Phospholipase_D-nuclease N-terminal AMD09_RS01125 PF13361 UvrD-like helicase C-terminal domain AMD09_RS01125 PF00580 UvrD/REP helicase N-terminal domain AMD09_RS01130 PF12464 Maltose acetyltransferase AMD09_RS01130 PF14602 Hexapeptide repeat of succinyl-transferase AMD09_RS01145 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 AMD09_RS01150 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMD09_RS01155 PF05638 Type VI secretion system effector, Hcp AMD09_RS01160 PF07024 ImpE protein AMD09_RS01165 PF04965 Gene 25-like lysozyme AMD09_RS01170 PF05947 Type VI secretion system, TssF AMD09_RS01180 PF00004 ATPase family associated with various cellular activities (AAA) AMD09_RS01180 PF07724 AAA domain (Cdc48 subfamily) AMD09_RS01180 PF17871 AAA lid domain AMD09_RS01180 PF10431 C-terminal, D2-small domain, of ClpB protein AMD09_RS01210 PF00328 Histidine phosphatase superfamily (branch 2) AMD09_RS01225 PF08281 Sigma-70, region 4 AMD09_RS01225 PF04542 Sigma-70 region 2 AMD09_RS01235 PF00069 Protein kinase domain AMD09_RS01235 PF03793 PASTA domain AMD09_RS01250 PF04717 Type VI secretion system, phage-baseplate injector AMD09_RS01265 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AMD09_RS01275 PF06761 Intracellular multiplication and human macrophage-killing AMD09_RS01275 PF14331 ImcF-related N-terminal domain AMD09_RS01275 PF06744 Type VI secretion protein IcmF C-terminal AMD09_RS01290 PF03793 PASTA domain AMD09_RS01290 PF00069 Protein kinase domain AMD09_RS01310 PF06812 ImpA, N-terminal, type VI secretion system AMD09_RS01320 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD09_RS01320 PF00476 DNA polymerase family A AMD09_RS01320 PF01612 3'-5' exonuclease AMD09_RS01320 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD09_RS01325 PF01218 Coproporphyrinogen III oxidase AMD09_RS01340 PF07676 WD40-like Beta Propeller Repeat AMD09_RS01340 PF00326 Prolyl oligopeptidase family AMD09_RS01360 PF04820 Tryptophan halogenase AMD09_RS01365 PF00550 Phosphopantetheine attachment site AMD09_RS01375 PF01553 Acyltransferase AMD09_RS01380 PF07977 FabA-like domain AMD09_RS01430 PF00535 Glycosyl transferase family 2 AMD09_RS01440 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD09_RS01440 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD09_RS01445 PF05166 YcgL domain AMD09_RS01460 PF00723 Glycosyl hydrolases family 15 AMD09_RS01465 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD09_RS01465 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD09_RS01470 PF00999 Sodium/hydrogen exchanger family AMD09_RS01470 PF02254 TrkA-N domain AMD09_RS01475 PF00194 Eukaryotic-type carbonic anhydrase AMD09_RS01480 PF03448 MgtE intracellular N domain AMD09_RS01480 PF01769 Divalent cation transporter AMD09_RS01480 PF00571 CBS domain AMD09_RS01485 PF13607 Succinyl-CoA ligase like flavodoxin domain AMD09_RS01485 PF13380 CoA binding domain AMD09_RS01485 PF00583 Acetyltransferase (GNAT) family AMD09_RS01495 PF02867 Ribonucleotide reductase, barrel domain AMD09_RS01495 PF00317 Ribonucleotide reductase, all-alpha domain AMD09_RS01495 PF03477 ATP cone domain AMD09_RS01500 PF00268 Ribonucleotide reductase, small chain AMD09_RS01530 PF02558 Ketopantoate reductase PanE/ApbA AMD09_RS01530 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMD09_RS01540 PF01061 ABC-2 type transporter AMD09_RS01545 PF00005 ABC transporter AMD09_RS01550 PF00970 Oxidoreductase FAD-binding domain AMD09_RS01550 PF00175 Oxidoreductase NAD-binding domain AMD09_RS01550 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD09_RS01555 PF01965 DJ-1/PfpI family AMD09_RS01555 PF12833 Helix-turn-helix domain AMD09_RS01565 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS01565 PF00593 TonB dependent receptor AMD09_RS01575 PF16916 Dimerisation domain of Zinc Transporter AMD09_RS01575 PF01545 Cation efflux family AMD09_RS01580 PF02583 Metal-sensitive transcriptional repressor AMD09_RS01585 PF01229 Glycosyl hydrolases family 39 AMD09_RS01595 PF01381 Helix-turn-helix AMD09_RS01605 PF00005 ABC transporter AMD09_RS01620 PF04820 Tryptophan halogenase AMD09_RS01645 PF00043 Glutathione S-transferase, C-terminal domain AMD09_RS01645 PF02798 Glutathione S-transferase, N-terminal domain AMD09_RS01650 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD09_RS01650 PF00326 Prolyl oligopeptidase family AMD09_RS01675 PF00490 Delta-aminolevulinic acid dehydratase AMD09_RS01685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS01685 PF03466 LysR substrate binding domain AMD09_RS01695 PF00667 FAD binding domain AMD09_RS01695 PF00258 Flavodoxin AMD09_RS01695 PF00175 Oxidoreductase NAD-binding domain AMD09_RS01705 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMD09_RS01705 PF01488 Shikimate / quinate 5-dehydrogenase AMD09_RS01705 PF08501 Shikimate dehydrogenase substrate binding domain AMD09_RS01720 PF13307 Helicase C-terminal domain AMD09_RS01720 PF06733 DEAD_2 AMD09_RS01725 PF00199 Catalase AMD09_RS01725 PF06628 Catalase-related immune-responsive AMD09_RS01740 PF01207 Dihydrouridine synthase (Dus) AMD09_RS01750 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS01750 PF00072 Response regulator receiver domain AMD09_RS01755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS01770 PF06167 Glucose-regulated metallo-peptidase M90 AMD09_RS01780 PF02237 Biotin protein ligase C terminal domain AMD09_RS01780 PF08279 HTH domain AMD09_RS01780 PF03099 Biotin/lipoate A/B protein ligase family AMD09_RS01785 PF03309 Type III pantothenate kinase AMD09_RS01800 PF02223 Thymidylate kinase AMD09_RS01825 PF00491 Arginase family AMD09_RS01840 PF05532 CsbD-like AMD09_RS01845 PF00579 tRNA synthetases class I (W and Y) AMD09_RS01850 PF00753 Metallo-beta-lactamase superfamily AMD09_RS01865 PF00892 EamA-like transporter family AMD09_RS01870 PF00892 EamA-like transporter family AMD09_RS01890 PF00005 ABC transporter AMD09_RS01895 PF13533 Biotin-lipoyl like AMD09_RS01900 PF07730 Histidine kinase AMD09_RS01905 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS01905 PF00072 Response regulator receiver domain AMD09_RS01920 PF00199 Catalase AMD09_RS01925 PF08281 Sigma-70, region 4 AMD09_RS01925 PF04542 Sigma-70 region 2 AMD09_RS01935 PF00883 Cytosol aminopeptidase family, catalytic domain AMD09_RS01935 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD09_RS01940 PF13419 Haloacid dehalogenase-like hydrolase AMD09_RS01945 PF01594 AI-2E family transporter AMD09_RS01965 PF00595 PDZ domain AMD09_RS01985 PF08521 Two-component sensor kinase N-terminal AMD09_RS01985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS01985 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS01990 PF00072 Response regulator receiver domain AMD09_RS01990 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS01995 PF08338 Domain of unknown function (DUF1731) AMD09_RS01995 PF01370 NAD dependent epimerase/dehydratase family AMD09_RS02035 PF01139 tRNA-splicing ligase RtcB AMD09_RS02055 PF00440 Bacterial regulatory proteins, tetR family AMD09_RS02060 PF00970 Oxidoreductase FAD-binding domain AMD09_RS02060 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD09_RS02060 PF00175 Oxidoreductase NAD-binding domain AMD09_RS02065 PF00487 Fatty acid desaturase AMD09_RS02070 PF00563 EAL domain AMD09_RS02070 PF12792 CSS motif domain associated with EAL AMD09_RS02085 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMD09_RS02085 PF01078 Magnesium chelatase, subunit ChlI AMD09_RS02090 PF04380 Membrane fusogenic activity AMD09_RS02095 PF00543 Nitrogen regulatory protein P-II AMD09_RS02125 PF17284 Spermidine synthase tetramerisation domain AMD09_RS02130 PF17944 Arginine decarboxylase C-terminal helical extension AMD09_RS02130 PF17810 Arginine decarboxylase helical bundle domain AMD09_RS02130 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD09_RS02140 PF00975 Thioesterase domain AMD09_RS02140 PF00501 AMP-binding enzyme AMD09_RS02140 PF00550 Phosphopantetheine attachment site AMD09_RS02140 PF13193 AMP-binding enzyme C-terminal domain AMD09_RS02140 PF00668 Condensation domain AMD09_RS02145 PF03033 Glycosyltransferase family 28 N-terminal domain AMD09_RS02150 PF01757 Acyltransferase family AMD09_RS02155 PF00106 short chain dehydrogenase AMD09_RS02170 PF03485 Arginyl tRNA synthetase N terminal domain AMD09_RS02170 PF05746 DALR anticodon binding domain AMD09_RS02170 PF00750 tRNA synthetases class I (R) AMD09_RS02175 PF04002 RadC-like JAB domain AMD09_RS02180 PF04127 DNA / pantothenate metabolism flavoprotein AMD09_RS02180 PF02441 Flavoprotein AMD09_RS02185 PF00692 dUTPase AMD09_RS02190 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD09_RS02190 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD09_RS02190 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD09_RS02190 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD09_RS02205 PF00535 Glycosyl transferase family 2 AMD09_RS02210 PF01370 NAD dependent epimerase/dehydratase family AMD09_RS02220 PF02195 ParB-like nuclease domain AMD09_RS02220 PF17762 HTH domain found in ParB protein AMD09_RS02225 PF13614 AAA domain AMD09_RS02235 PF00156 Phosphoribosyl transferase domain AMD09_RS02240 PF03372 Endonuclease/Exonuclease/phosphatase family AMD09_RS02245 PF07690 Major Facilitator Superfamily AMD09_RS02255 PF03702 Anhydro-N-acetylmuramic acid kinase AMD09_RS02260 PF01551 Peptidase family M23 AMD09_RS02260 PF04225 Opacity-associated protein A LysM-like domain AMD09_RS02265 PF00579 tRNA synthetases class I (W and Y) AMD09_RS02295 PF06827 Zinc finger found in FPG and IleRS AMD09_RS02295 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD09_RS02295 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD09_RS02305 PF04349 Periplasmic glucan biosynthesis protein, MdoG AMD09_RS02310 PF00360 Phytochrome region AMD09_RS02310 PF01590 GAF domain AMD09_RS02310 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS02310 PF08446 PAS fold AMD09_RS02310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS02315 PF00265 Thymidine kinase AMD09_RS02320 PF13361 UvrD-like helicase C-terminal domain AMD09_RS02320 PF00580 UvrD/REP helicase N-terminal domain AMD09_RS02340 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AMD09_RS02345 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD09_RS02350 PF04820 Tryptophan halogenase AMD09_RS02370 PF00356 Bacterial regulatory proteins, lacI family AMD09_RS02380 PF01553 Acyltransferase AMD09_RS02385 PF00698 Acyl transferase domain AMD09_RS02385 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD09_RS02385 PF08659 KR domain AMD09_RS02385 PF14765 Polyketide synthase dehydratase AMD09_RS02385 PF00550 Phosphopantetheine attachment site AMD09_RS02385 PF00107 Zinc-binding dehydrogenase AMD09_RS02385 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD09_RS02385 PF16197 Ketoacyl-synthetase C-terminal extension AMD09_RS02385 PF08240 Alcohol dehydrogenase GroES-like domain AMD09_RS02400 PF02796 Helix-turn-helix domain of resolvase AMD09_RS02400 PF00665 Integrase core domain AMD09_RS02405 PF01695 IstB-like ATP binding protein AMD09_RS02410 PF00150 Cellulase (glycosyl hydrolase family 5) AMD09_RS02415 PF08240 Alcohol dehydrogenase GroES-like domain AMD09_RS02415 PF00107 Zinc-binding dehydrogenase AMD09_RS02420 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMD09_RS02420 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD09_RS02425 PF01645 Conserved region in glutamate synthase AMD09_RS02425 PF04898 Glutamate synthase central domain AMD09_RS02425 PF00310 Glutamine amidotransferases class-II AMD09_RS02425 PF01493 GXGXG motif AMD09_RS02455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS02455 PF03466 LysR substrate binding domain AMD09_RS02475 PF02350 UDP-N-acetylglucosamine 2-epimerase AMD09_RS02485 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMD09_RS02490 PF13439 Glycosyltransferase Family 4 AMD09_RS02490 PF00534 Glycosyl transferases group 1 AMD09_RS02525 PF16363 GDP-mannose 4,6 dehydratase AMD09_RS02540 PF00664 ABC transporter transmembrane region AMD09_RS02540 PF00005 ABC transporter AMD09_RS02570 PF02603 HPr Serine kinase N terminus AMD09_RS02570 PF07475 HPr Serine kinase C-terminal domain AMD09_RS02575 PF00685 Sulfotransferase domain AMD09_RS02650 PF00270 DEAD/DEAH box helicase AMD09_RS02650 PF09369 Domain of unknown function (DUF1998) AMD09_RS02650 PF00271 Helicase conserved C-terminal domain AMD09_RS02655 PF03006 Haemolysin-III related AMD09_RS02670 PF00106 short chain dehydrogenase AMD09_RS02680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS02680 PF03466 LysR substrate binding domain AMD09_RS02695 PF02525 Flavodoxin-like fold AMD09_RS02700 PF01527 Transposase AMD09_RS02710 PF13276 HTH-like domain AMD09_RS02710 PF13333 Integrase core domain AMD09_RS02710 PF00665 Integrase core domain AMD09_RS02755 PF05532 CsbD-like AMD09_RS02775 PF01447 Thermolysin metallopeptidase, catalytic domain AMD09_RS02775 PF16485 Protealysin propeptide AMD09_RS02775 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD09_RS02785 PF13344 Haloacid dehalogenase-like hydrolase AMD09_RS02785 PF00293 NUDIX domain AMD09_RS02805 PF00085 Thioredoxin AMD09_RS02815 PF00083 Sugar (and other) transporter AMD09_RS02815 PF08946 Osmosensory transporter coiled coil AMD09_RS02855 PF07726 ATPase family associated with various cellular activities (AAA) AMD09_RS02855 PF17863 AAA lid domain AMD09_RS02885 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMD09_RS02890 PF00155 Aminotransferase class I and II AMD09_RS02895 PF00593 TonB dependent receptor AMD09_RS02895 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS02905 PF07883 Cupin domain AMD09_RS02910 PF00171 Aldehyde dehydrogenase family AMD09_RS02930 PF02735 Ku70/Ku80 beta-barrel domain AMD09_RS02935 PF01070 FMN-dependent dehydrogenase AMD09_RS02945 PF00144 Beta-lactamase AMD09_RS02950 PF07730 Histidine kinase AMD09_RS02955 PF00072 Response regulator receiver domain AMD09_RS02955 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS02975 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS02975 PF18500 CadC C-terminal domain 1 AMD09_RS02980 PF07055 Enoyl reductase FAD binding domain AMD09_RS02980 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMD09_RS02980 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMD09_RS02990 PF00294 pfkB family carbohydrate kinase AMD09_RS03045 PF01527 Transposase AMD09_RS03050 PF13333 Integrase core domain AMD09_RS03050 PF00665 Integrase core domain AMD09_RS03050 PF13276 HTH-like domain AMD09_RS03055 PF11896 Domain of unknown function (DUF3416) AMD09_RS03055 PF00128 Alpha amylase, catalytic domain AMD09_RS03060 PF16657 Maltogenic Amylase, C-terminal domain AMD09_RS03060 PF00128 Alpha amylase, catalytic domain AMD09_RS03065 PF00128 Alpha amylase, catalytic domain AMD09_RS03065 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD09_RS03065 PF02806 Alpha amylase, C-terminal all-beta domain AMD09_RS03075 PF00248 Aldo/keto reductase family AMD09_RS03080 PF00135 Carboxylesterase family AMD09_RS03085 PF07859 alpha/beta hydrolase fold AMD09_RS03085 PF13472 GDSL-like Lipase/Acylhydrolase family AMD09_RS03095 PF03480 Bacterial extracellular solute-binding protein, family 7 AMD09_RS03105 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMD09_RS03110 PF04616 Glycosyl hydrolases family 43 AMD09_RS03110 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD09_RS03115 PF00356 Bacterial regulatory proteins, lacI family AMD09_RS03120 PF04962 KduI/IolB family AMD09_RS03135 PF00657 GDSL-like Lipase/Acylhydrolase AMD09_RS03150 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMD09_RS03155 PF01037 Lrp/AsnC ligand binding domain AMD09_RS03160 PF00593 TonB dependent receptor AMD09_RS03160 PF07660 Secretin and TonB N terminus short domain AMD09_RS03160 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS03165 PF01734 Patatin-like phospholipase AMD09_RS03175 PF00005 ABC transporter AMD09_RS03190 PF00005 ABC transporter AMD09_RS03195 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS03205 PF03781 Sulfatase-modifying factor enzyme 1 AMD09_RS03205 PF12867 DinB superfamily AMD09_RS03225 PF01381 Helix-turn-helix AMD09_RS03250 PF10609 NUBPL iron-transfer P-loop NTPase AMD09_RS03250 PF01883 Iron-sulfur cluster assembly protein AMD09_RS03265 PF13091 PLD-like domain AMD09_RS03270 PF03061 Thioesterase superfamily AMD09_RS03310 PF02673 Bacitracin resistance protein BacA AMD09_RS03315 PF03951 Glutamine synthetase, beta-Grasp domain AMD09_RS03315 PF00120 Glutamine synthetase, catalytic domain AMD09_RS03320 PF00543 Nitrogen regulatory protein P-II AMD09_RS03325 PF00909 Ammonium Transporter Family AMD09_RS03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS03330 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS03330 PF00989 PAS fold AMD09_RS03335 PF00158 Sigma-54 interaction domain AMD09_RS03335 PF00072 Response regulator receiver domain AMD09_RS03335 PF02954 Bacterial regulatory protein, Fis family AMD09_RS03340 PF00080 Copper/zinc superoxide dismutase (SODC) AMD09_RS03345 PF00080 Copper/zinc superoxide dismutase (SODC) AMD09_RS03360 PF00108 Thiolase, N-terminal domain AMD09_RS03360 PF02803 Thiolase, C-terminal domain AMD09_RS03395 PF00581 Rhodanese-like domain AMD09_RS03400 PF02556 Preprotein translocase subunit SecB AMD09_RS03405 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMD09_RS03405 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMD09_RS03415 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD09_RS03415 PF00205 Thiamine pyrophosphate enzyme, central domain AMD09_RS03415 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD09_RS03420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS03425 PF00158 Sigma-54 interaction domain AMD09_RS03425 PF02954 Bacterial regulatory protein, Fis family AMD09_RS03425 PF00072 Response regulator receiver domain AMD09_RS03440 PF07690 Major Facilitator Superfamily AMD09_RS03445 PF00588 SpoU rRNA Methylase family AMD09_RS03460 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD09_RS03460 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD09_RS03470 PF00561 alpha/beta hydrolase fold AMD09_RS03475 PF03692 Putative zinc- or iron-chelating domain AMD09_RS03480 PF00501 AMP-binding enzyme AMD09_RS03485 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD09_RS03500 PF01820 D-ala D-ala ligase N-terminus AMD09_RS03500 PF07478 D-ala D-ala ligase C-terminus AMD09_RS03510 PF03109 ABC1 family AMD09_RS03520 PF00849 RNA pseudouridylate synthase AMD09_RS03530 PF00472 RF-1 domain AMD09_RS03540 PF01112 Asparaginase AMD09_RS03545 PF01432 Peptidase family M3 AMD09_RS03550 PF12706 Beta-lactamase superfamily domain AMD09_RS03570 PF12833 Helix-turn-helix domain AMD09_RS03575 PF00999 Sodium/hydrogen exchanger family AMD09_RS03580 PF03466 LysR substrate binding domain AMD09_RS03580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS03585 PF01274 Malate synthase AMD09_RS03595 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS03615 PF00326 Prolyl oligopeptidase family AMD09_RS03620 PF00364 Biotin-requiring enzyme AMD09_RS03620 PF02785 Biotin carboxylase C-terminal domain AMD09_RS03620 PF18140 Propionyl-coenzyme A carboxylase BT domain AMD09_RS03620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD09_RS03620 PF00289 Biotin carboxylase, N-terminal domain AMD09_RS03625 PF01039 Carboxyl transferase domain AMD09_RS03630 PF02770 Acyl-CoA dehydrogenase, middle domain AMD09_RS03630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD09_RS03630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD09_RS03685 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMD09_RS03685 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMD09_RS03710 PF03969 AFG1-like ATPase AMD09_RS03715 PF01047 MarR family AMD09_RS03720 PF02566 OsmC-like protein AMD09_RS03750 PF00107 Zinc-binding dehydrogenase AMD09_RS03750 PF16884 N-terminal domain of oxidoreductase AMD09_RS03755 PF00248 Aldo/keto reductase family AMD09_RS03765 PF00849 RNA pseudouridylate synthase AMD09_RS03780 PF04408 Helicase associated domain (HA2) AMD09_RS03780 PF00270 DEAD/DEAH box helicase AMD09_RS03780 PF00271 Helicase conserved C-terminal domain AMD09_RS03780 PF08482 ATP-dependent helicase C-terminal AMD09_RS03790 PF07308 Protein of unknown function (DUF1456) AMD09_RS03795 PF00576 HIUase/Transthyretin family AMD09_RS03800 PF13454 FAD-NAD(P)-binding AMD09_RS03805 PF09349 OHCU decarboxylase AMD09_RS03805 PF01014 Uricase AMD09_RS03820 PF00266 Aminotransferase class-V AMD09_RS03825 PF07687 Peptidase dimerisation domain AMD09_RS03825 PF01546 Peptidase family M20/M25/M40 AMD09_RS03830 PF03466 LysR substrate binding domain AMD09_RS03830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS03835 PF07690 Major Facilitator Superfamily AMD09_RS03850 PF01425 Amidase AMD09_RS03855 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD09_RS03865 PF00860 Permease family AMD09_RS03875 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD09_RS03880 PF00355 Rieske [2Fe-2S] domain AMD09_RS03885 PF03466 LysR substrate binding domain AMD09_RS03885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS03890 PF01026 TatD related DNase AMD09_RS03905 PF03466 LysR substrate binding domain AMD09_RS03905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS03910 PF07690 Major Facilitator Superfamily AMD09_RS03920 PF00561 alpha/beta hydrolase fold AMD09_RS03925 PF02146 Sir2 family AMD09_RS03930 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD09_RS03935 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD09_RS03935 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD09_RS03945 PF00551 Formyl transferase AMD09_RS03950 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS03950 PF00072 Response regulator receiver domain AMD09_RS03955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS03955 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS03955 PF00672 HAMP domain AMD09_RS03960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD09_RS03960 PF00529 HlyD membrane-fusion protein of T1SS AMD09_RS03965 PF00873 AcrB/AcrD/AcrF family AMD09_RS03970 PF02321 Outer membrane efflux protein AMD09_RS03980 PF02219 Methylenetetrahydrofolate reductase AMD09_RS03985 PF02677 Epoxyqueuosine reductase QueH AMD09_RS03990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS03990 PF03466 LysR substrate binding domain AMD09_RS03995 PF03358 NADPH-dependent FMN reductase AMD09_RS04005 PF01717 Cobalamin-independent synthase, Catalytic domain AMD09_RS04005 PF08267 Cobalamin-independent synthase, N-terminal domain AMD09_RS04010 PF03812 2-keto-3-deoxygluconate permease AMD09_RS04020 PF05368 NmrA-like family AMD09_RS04025 PF01638 HxlR-like helix-turn-helix AMD09_RS04050 PF13333 Integrase core domain AMD09_RS04050 PF00665 Integrase core domain AMD09_RS04050 PF13276 HTH-like domain AMD09_RS04055 PF01527 Transposase AMD09_RS04060 PF00589 Phage integrase family AMD09_RS04060 PF13495 Phage integrase, N-terminal SAM-like domain AMD09_RS04065 PF00920 Dehydratase family AMD09_RS04085 PF00132 Bacterial transferase hexapeptide (six repeats) AMD09_RS04095 PF07690 Major Facilitator Superfamily AMD09_RS04100 PF01966 HD domain AMD09_RS04100 PF11871 Domain of unknown function (DUF3391) AMD09_RS04120 PF00171 Aldehyde dehydrogenase family AMD09_RS04130 PF01494 FAD binding domain AMD09_RS04140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD09_RS04140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD09_RS04145 PF00230 Major intrinsic protein AMD09_RS04150 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMD09_RS04150 PF01266 FAD dependent oxidoreductase AMD09_RS04155 PF08220 DeoR-like helix-turn-helix domain AMD09_RS04155 PF00455 DeoR C terminal sensor domain AMD09_RS04160 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD09_RS04160 PF00970 Oxidoreductase FAD-binding domain AMD09_RS04165 PF00355 Rieske [2Fe-2S] domain AMD09_RS04170 PF01144 Coenzyme A transferase AMD09_RS04175 PF01144 Coenzyme A transferase AMD09_RS04180 PF00108 Thiolase, N-terminal domain AMD09_RS04180 PF02803 Thiolase, C-terminal domain AMD09_RS04185 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal AMD09_RS04185 PF00775 Dioxygenase AMD09_RS04195 PF10397 Adenylosuccinate lyase C-terminus AMD09_RS04195 PF00206 Lyase AMD09_RS04200 PF12146 Serine aminopeptidase, S33 AMD09_RS04205 PF02627 Carboxymuconolactone decarboxylase family AMD09_RS04215 PF01614 Bacterial transcriptional regulator AMD09_RS04215 PF09339 IclR helix-turn-helix domain AMD09_RS04225 PF07859 alpha/beta hydrolase fold AMD09_RS04230 PF10677 Protein of unknown function (DUF2490) AMD09_RS04235 PF13932 GidA associated domain AMD09_RS04235 PF01134 Glucose inhibited division protein A AMD09_RS04245 PF00291 Pyridoxal-phosphate dependent enzyme AMD09_RS04265 PF13649 Methyltransferase domain AMD09_RS04275 PF12697 Alpha/beta hydrolase family AMD09_RS04285 PF00155 Aminotransferase class I and II AMD09_RS04290 PF06968 Biotin and Thiamin Synthesis associated domain AMD09_RS04290 PF04055 Radical SAM superfamily AMD09_RS04300 PF01040 UbiA prenyltransferase family AMD09_RS04315 PF05819 NolX protein AMD09_RS04350 PF01313 Bacterial export proteins, family 3 AMD09_RS04355 PF00813 FliP family AMD09_RS04370 PF00771 FHIPEP family AMD09_RS04375 PF01312 FlhB HrpN YscU SpaS Family AMD09_RS04390 PF01514 Secretory protein of YscJ/FliF family AMD09_RS04405 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD09_RS04405 PF18269 T3SS EscN ATPase C-terminal domain AMD09_RS04405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD09_RS04415 PF01311 Bacterial export proteins, family 1 AMD09_RS04420 PF00263 Bacterial type II and III secretion system protein AMD09_RS04420 PF03958 Bacterial type II/III secretion system short domain AMD09_RS04430 PF01464 Transglycosylase SLT domain AMD09_RS04445 PF12795 Mechanosensitive ion channel porin domain AMD09_RS04445 PF00924 Mechanosensitive ion channel AMD09_RS04445 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMD09_RS04450 PF00884 Sulfatase AMD09_RS04460 PF05661 Protein of unknown function (DUF808) AMD09_RS04465 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS04470 PF08323 Starch synthase catalytic domain AMD09_RS04470 PF00534 Glycosyl transferases group 1 AMD09_RS04475 PF00128 Alpha amylase, catalytic domain AMD09_RS04475 PF02806 Alpha amylase, C-terminal all-beta domain AMD09_RS04475 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD09_RS04480 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD09_RS04480 PF00128 Alpha amylase, catalytic domain AMD09_RS04480 PF11941 Domain of unknown function (DUF3459) AMD09_RS04485 PF02446 4-alpha-glucanotransferase AMD09_RS04490 PF00128 Alpha amylase, catalytic domain AMD09_RS04500 PF00128 Alpha amylase, catalytic domain AMD09_RS04500 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD09_RS04505 PF13460 NAD(P)H-binding AMD09_RS04525 PF06903 VirK protein AMD09_RS04530 PF02321 Outer membrane efflux protein AMD09_RS04545 PF00873 AcrB/AcrD/AcrF family AMD09_RS04560 PF00270 DEAD/DEAH box helicase AMD09_RS04560 PF00271 Helicase conserved C-terminal domain AMD09_RS04565 PF02817 e3 binding domain AMD09_RS04565 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD09_RS04565 PF00364 Biotin-requiring enzyme AMD09_RS04575 PF02779 Transketolase, pyrimidine binding domain AMD09_RS04575 PF02780 Transketolase, C-terminal domain AMD09_RS04580 PF00676 Dehydrogenase E1 component AMD09_RS04590 PF03301 Tryptophan 2,3-dioxygenase AMD09_RS04595 PF00854 POT family AMD09_RS04605 PF01047 MarR family AMD09_RS04610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD09_RS04615 PF04209 homogentisate 1,2-dioxygenase AMD09_RS04630 PF03334 Na+/H+ antiporter subunit AMD09_RS04635 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AMD09_RS04645 PF00361 Proton-conducting membrane transporter AMD09_RS04650 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD09_RS04655 PF13244 Domain of unknown function (DUF4040) AMD09_RS04655 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AMD09_RS04655 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD09_RS04655 PF00361 Proton-conducting membrane transporter AMD09_RS04670 PF01483 Proprotein convertase P-domain AMD09_RS04670 PF01447 Thermolysin metallopeptidase, catalytic domain AMD09_RS04670 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMD09_RS04670 PF07504 Fungalysin/Thermolysin Propeptide Motif AMD09_RS04675 PF00182 Chitinase class I AMD09_RS04695 PF01259 SAICAR synthetase AMD09_RS04700 PF00226 DnaJ domain AMD09_RS04700 PF05099 Tellurite resistance protein TerB AMD09_RS04710 PF00834 Ribulose-phosphate 3 epimerase family AMD09_RS04715 PF00583 Acetyltransferase (GNAT) family AMD09_RS04720 PF00781 Diacylglycerol kinase catalytic domain AMD09_RS04725 PF00425 chorismate binding enzyme AMD09_RS04725 PF04715 Anthranilate synthase component I, N terminal region AMD09_RS04735 PF00117 Glutamine amidotransferase class-I AMD09_RS04745 PF00591 Glycosyl transferase family, a/b domain AMD09_RS04745 PF02885 Glycosyl transferase family, helical bundle domain AMD09_RS04750 PF00218 Indole-3-glycerol phosphate synthase AMD09_RS04760 PF00027 Cyclic nucleotide-binding domain AMD09_RS04760 PF00325 Bacterial regulatory proteins, crp family AMD09_RS04765 PF02675 S-adenosylmethionine decarboxylase AMD09_RS04770 PF00893 Small Multidrug Resistance protein AMD09_RS04775 PF03232 Ubiquinone biosynthesis protein COQ7 AMD09_RS04780 PF00572 Ribosomal protein L13 AMD09_RS04785 PF00380 Ribosomal protein S9/S16 AMD09_RS04800 PF00293 NUDIX domain AMD09_RS04810 PF00210 Ferritin-like domain AMD09_RS04815 PF00672 HAMP domain AMD09_RS04815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS04815 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS04815 PF01627 Hpt domain AMD09_RS04815 PF00072 Response regulator receiver domain AMD09_RS04815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD09_RS04820 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS04820 PF00072 Response regulator receiver domain AMD09_RS04840 PF01521 Iron-sulphur cluster biosynthesis AMD09_RS04855 PF09297 NADH pyrophosphatase zinc ribbon domain AMD09_RS04855 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMD09_RS04855 PF00293 NUDIX domain AMD09_RS04860 PF17113 Regulatory signalling modulator protein AmpE AMD09_RS04860 PF03186 CobD/Cbib protein AMD09_RS04880 PF07690 Major Facilitator Superfamily AMD09_RS04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS04885 PF03466 LysR substrate binding domain AMD09_RS04890 PF07690 Major Facilitator Superfamily AMD09_RS04895 PF12805 FUSC-like inner membrane protein yccS AMD09_RS04905 PF02844 Phosphoribosylglycinamide synthetase, N domain AMD09_RS04905 PF02843 Phosphoribosylglycinamide synthetase, C domain AMD09_RS04905 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMD09_RS04915 PF02142 MGS-like domain AMD09_RS04915 PF01808 AICARFT/IMPCHase bienzyme AMD09_RS04920 PF01066 CDP-alcohol phosphatidyltransferase AMD09_RS04925 PF12146 Serine aminopeptidase, S33 AMD09_RS04925 PF12147 Putative methyltransferase AMD09_RS04930 PF00782 Dual specificity phosphatase, catalytic domain AMD09_RS04960 PF02954 Bacterial regulatory protein, Fis family AMD09_RS04975 PF01381 Helix-turn-helix AMD09_RS05005 PF02785 Biotin carboxylase C-terminal domain AMD09_RS05005 PF00289 Biotin carboxylase, N-terminal domain AMD09_RS05005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD09_RS05015 PF00364 Biotin-requiring enzyme AMD09_RS05020 PF01220 Dehydroquinase class II AMD09_RS05025 PF02683 Cytochrome C biogenesis protein transmembrane region AMD09_RS05025 PF11412 Disulphide bond corrector protein DsbC AMD09_RS05030 PF03091 CutA1 divalent ion tolerance protein AMD09_RS05045 PF01852 START domain AMD09_RS05055 PF00106 short chain dehydrogenase AMD09_RS05060 PF04231 Endonuclease I AMD09_RS05065 PF00166 Chaperonin 10 Kd subunit AMD09_RS05070 PF00118 TCP-1/cpn60 chaperonin family AMD09_RS05080 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS05080 PF00593 TonB dependent receptor AMD09_RS05085 PF00793 DAHP synthetase I family AMD09_RS05100 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD09_RS05110 PF03710 Glutamate-ammonia ligase adenylyltransferase AMD09_RS05110 PF08335 GlnD PII-uridylyltransferase AMD09_RS05115 PF02592 Putative vitamin uptake transporter AMD09_RS05135 PF00881 Nitroreductase family AMD09_RS05140 PF04264 YceI-like domain AMD09_RS05165 PF16957 Malonate decarboxylase, alpha subunit, transporter AMD09_RS05170 PF06857 Malonate decarboxylase delta subunit (MdcD) AMD09_RS05175 PF01039 Carboxyl transferase domain AMD09_RS05185 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG AMD09_RS05190 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase AMD09_RS05195 PF00698 Acyl transferase domain AMD09_RS05205 PF00392 Bacterial regulatory proteins, gntR family AMD09_RS05205 PF07729 FCD domain AMD09_RS05210 PF13419 Haloacid dehalogenase-like hydrolase AMD09_RS05240 PF07745 Glycosyl hydrolase family 53 AMD09_RS05245 PF00456 Transketolase, thiamine diphosphate binding domain AMD09_RS05245 PF17831 Pyruvate dehydrogenase E1 component middle domain AMD09_RS05250 PF13333 Integrase core domain AMD09_RS05250 PF00665 Integrase core domain AMD09_RS05250 PF13276 HTH-like domain AMD09_RS05260 PF01527 Transposase AMD09_RS05265 PF00106 short chain dehydrogenase AMD09_RS05280 PF00106 short chain dehydrogenase AMD09_RS05290 PF13409 Glutathione S-transferase, N-terminal domain AMD09_RS05315 PF01527 Transposase AMD09_RS05325 PF13333 Integrase core domain AMD09_RS05325 PF00665 Integrase core domain AMD09_RS05325 PF13276 HTH-like domain AMD09_RS05335 PF11838 ERAP1-like C-terminal domain AMD09_RS05335 PF01433 Peptidase family M1 domain AMD09_RS05345 PF00588 SpoU rRNA Methylase family AMD09_RS05345 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD09_RS05350 PF00135 Carboxylesterase family AMD09_RS05360 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD09_RS05360 PF14508 Glycosyl-hydrolase 97 N-terminal AMD09_RS05360 PF10566 Glycoside hydrolase 97 AMD09_RS05365 PF00703 Glycosyl hydrolases family 2 AMD09_RS05365 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD09_RS05365 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain AMD09_RS05375 PF00356 Bacterial regulatory proteins, lacI family AMD09_RS05390 PF01741 Large-conductance mechanosensitive channel, MscL AMD09_RS05395 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMD09_RS05410 PF02080 TrkA-C domain AMD09_RS05410 PF03600 Citrate transporter AMD09_RS05415 PF02390 Putative methyltransferase AMD09_RS05420 PF05690 Thiazole biosynthesis protein ThiG AMD09_RS05430 PF00657 GDSL-like Lipase/Acylhydrolase AMD09_RS05430 PF03797 Autotransporter beta-domain AMD09_RS05515 PF04002 RadC-like JAB domain AMD09_RS05550 PF01555 DNA methylase AMD09_RS05575 PF00665 Integrase core domain AMD09_RS05575 PF02796 Helix-turn-helix domain of resolvase AMD09_RS05580 PF01695 IstB-like ATP binding protein AMD09_RS05630 PF00128 Alpha amylase, catalytic domain AMD09_RS05630 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMD09_RS05645 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS05645 PF00072 Response regulator receiver domain AMD09_RS05650 PF00989 PAS fold AMD09_RS05650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS05650 PF16736 Single Cache-like AMD09_RS05650 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS05655 PF13276 HTH-like domain AMD09_RS05655 PF13333 Integrase core domain AMD09_RS05655 PF00665 Integrase core domain AMD09_RS05660 PF01527 Transposase AMD09_RS05675 PF01121 Dephospho-CoA kinase AMD09_RS05680 PF06750 Bacterial Peptidase A24 N-terminal domain AMD09_RS05680 PF01478 Type IV leader peptidase family AMD09_RS05685 PF00482 Type II secretion system (T2SS), protein F AMD09_RS05690 PF00114 Pilin (bacterial filament) AMD09_RS05690 PF07963 Prokaryotic N-terminal methylation motif AMD09_RS05695 PF07963 Prokaryotic N-terminal methylation motif AMD09_RS05695 PF00114 Pilin (bacterial filament) AMD09_RS05700 PF00437 Type II/IV secretion system protein AMD09_RS05700 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD09_RS05705 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD09_RS05705 PF00437 Type II/IV secretion system protein AMD09_RS05710 PF00158 Sigma-54 interaction domain AMD09_RS05710 PF00072 Response regulator receiver domain AMD09_RS05710 PF02954 Bacterial regulatory protein, Fis family AMD09_RS05715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS05715 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS05720 PF08442 ATP-grasp domain AMD09_RS05720 PF00549 CoA-ligase AMD09_RS05725 PF00549 CoA-ligase AMD09_RS05725 PF02629 CoA binding domain AMD09_RS05750 PF01129 NAD:arginine ADP-ribosyltransferase AMD09_RS05760 PF00665 Integrase core domain AMD09_RS05760 PF02796 Helix-turn-helix domain of resolvase AMD09_RS05800 PF01527 Transposase AMD09_RS05805 PF13276 HTH-like domain AMD09_RS05805 PF00665 Integrase core domain AMD09_RS05805 PF13333 Integrase core domain AMD09_RS05965 PF02954 Bacterial regulatory protein, Fis family AMD09_RS05965 PF00072 Response regulator receiver domain AMD09_RS05965 PF00158 Sigma-54 interaction domain AMD09_RS05970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS05970 PF13426 PAS domain AMD09_RS05970 PF00072 Response regulator receiver domain AMD09_RS06045 PF01695 IstB-like ATP binding protein AMD09_RS06055 PF11798 IMS family HHH motif AMD09_RS06055 PF11799 impB/mucB/samB family C-terminal domain AMD09_RS06055 PF00817 impB/mucB/samB family AMD09_RS06055 PF13438 Domain of unknown function (DUF4113) AMD09_RS06060 PF00717 Peptidase S24-like AMD09_RS06065 PF00989 PAS fold AMD09_RS06065 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS06065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS06075 PF05697 Bacterial trigger factor protein (TF) AMD09_RS06075 PF05698 Bacterial trigger factor protein (TF) C-terminus AMD09_RS06080 PF00574 Clp protease AMD09_RS06085 PF10431 C-terminal, D2-small domain, of ClpB protein AMD09_RS06085 PF07724 AAA domain (Cdc48 subfamily) AMD09_RS06085 PF06689 ClpX C4-type zinc finger AMD09_RS06090 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMD09_RS06090 PF05362 Lon protease (S16) C-terminal proteolytic domain AMD09_RS06090 PF00004 ATPase family associated with various cellular activities (AAA) AMD09_RS06095 PF00216 Bacterial DNA-binding protein AMD09_RS06120 PF01476 LysM domain AMD09_RS06120 PF05257 CHAP domain AMD09_RS06125 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMD09_RS06125 PF00753 Metallo-beta-lactamase superfamily AMD09_RS06135 PF00075 RNase H AMD09_RS06140 PF00929 Exonuclease AMD09_RS06160 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMD09_RS06170 PF12706 Beta-lactamase superfamily domain AMD09_RS06170 PF00753 Metallo-beta-lactamase superfamily AMD09_RS06175 PF04055 Radical SAM superfamily AMD09_RS06175 PF06463 Molybdenum Cofactor Synthesis C AMD09_RS06185 PF01967 MoaC family AMD09_RS06190 PF02597 ThiS family AMD09_RS06195 PF02391 MoaE protein AMD09_RS06205 PF01527 Transposase AMD09_RS06210 PF00665 Integrase core domain AMD09_RS06210 PF13333 Integrase core domain AMD09_RS06210 PF13276 HTH-like domain AMD09_RS06240 PF12169 DNA polymerase III subunits gamma and tau domain III AMD09_RS06240 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMD09_RS06240 PF12170 DNA polymerase III tau subunit V interacting with alpha AMD09_RS06245 PF02575 YbaB/EbfC DNA-binding family AMD09_RS06250 PF02132 RecR protein AMD09_RS06250 PF13662 Toprim domain AMD09_RS06255 PF01230 HIT domain AMD09_RS06265 PF11992 Domain of unknown function (DUF3488) AMD09_RS06265 PF01841 Transglutaminase-like superfamily AMD09_RS06265 PF13559 Domain of unknown function (DUF4129) AMD09_RS06275 PF07726 ATPase family associated with various cellular activities (AAA) AMD09_RS06275 PF17863 AAA lid domain AMD09_RS06300 PF02545 Maf-like protein AMD09_RS06305 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMD09_RS06310 PF01783 Ribosomal L32p protein family AMD09_RS06315 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD09_RS06315 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD09_RS06325 PF00698 Acyl transferase domain AMD09_RS06335 PF00550 Phosphopantetheine attachment site AMD09_RS06340 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD09_RS06340 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD09_RS06345 PF00425 chorismate binding enzyme AMD09_RS06345 PF04715 Anthranilate synthase component I, N terminal region AMD09_RS06350 PF02618 YceG-like family AMD09_RS06355 PF09115 DNA polymerase III, delta subunit, C terminal AMD09_RS06375 PF02954 Bacterial regulatory protein, Fis family AMD09_RS06375 PF06506 Propionate catabolism activator AMD09_RS06375 PF00158 Sigma-54 interaction domain AMD09_RS06385 PF00285 Citrate synthase, C-terminal domain AMD09_RS06390 PF00694 Aconitase C-terminal domain AMD09_RS06390 PF00330 Aconitase family (aconitate hydratase) AMD09_RS06395 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH AMD09_RS06400 PF04303 PrpF protein AMD09_RS06405 PF00593 TonB dependent receptor AMD09_RS06405 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS06415 PF01835 MG2 domain AMD09_RS06415 PF17962 Bacterial macroglobulin domain 6 AMD09_RS06415 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AMD09_RS06415 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AMD09_RS06415 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AMD09_RS06415 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AMD09_RS06415 PF07703 Alpha-2-macroglobulin bait region domain AMD09_RS06415 PF00207 Alpha-2-macroglobulin family AMD09_RS06430 PF06832 Penicillin-Binding Protein C-terminus Family AMD09_RS06430 PF00912 Transglycosylase AMD09_RS06430 PF00905 Penicillin binding protein transpeptidase domain AMD09_RS06440 PF08534 Redoxin AMD09_RS06450 PF01556 DnaJ C terminal domain AMD09_RS06450 PF00226 DnaJ domain AMD09_RS06455 PF00072 Response regulator receiver domain AMD09_RS06460 PF01145 SPFH domain / Band 7 family AMD09_RS06460 PF12221 Bacterial membrane protein N terminal AMD09_RS06465 PF01145 SPFH domain / Band 7 family AMD09_RS06475 PF00709 Adenylosuccinate synthetase AMD09_RS06480 PF01433 Peptidase family M1 domain AMD09_RS06480 PF11838 ERAP1-like C-terminal domain AMD09_RS06495 PF00440 Bacterial regulatory proteins, tetR family AMD09_RS06565 PF13456 Reverse transcriptase-like AMD09_RS06565 PF00300 Histidine phosphatase superfamily (branch 1) AMD09_RS06570 PF01256 Carbohydrate kinase AMD09_RS06580 PF00723 Glycosyl hydrolases family 15 AMD09_RS06590 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD09_RS06590 PF07971 Glycosyl hydrolase family 92 AMD09_RS06610 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD09_RS06630 PF17755 UvrA DNA-binding domain AMD09_RS06635 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD09_RS06635 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD09_RS06640 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD09_RS06640 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD09_RS06645 PF01799 [2Fe-2S] binding domain AMD09_RS06645 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD09_RS06680 PF00717 Peptidase S24-like AMD09_RS06680 PF01726 LexA DNA binding domain AMD09_RS06695 PF02811 PHP domain AMD09_RS06695 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD09_RS06695 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD09_RS06695 PF14579 Helix-hairpin-helix motif AMD09_RS06700 PF00326 Prolyl oligopeptidase family AMD09_RS06710 PF03169 OPT oligopeptide transporter protein AMD09_RS06725 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD09_RS06725 PF07676 WD40-like Beta Propeller Repeat AMD09_RS06725 PF00326 Prolyl oligopeptidase family AMD09_RS06740 PF12833 Helix-turn-helix domain AMD09_RS06740 PF02311 AraC-like ligand binding domain AMD09_RS06765 PF02559 CarD-like/TRCF domain AMD09_RS06765 PF00270 DEAD/DEAH box helicase AMD09_RS06765 PF17757 UvrB interaction domain AMD09_RS06765 PF00271 Helicase conserved C-terminal domain AMD09_RS06765 PF03461 TRCF domain AMD09_RS06775 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMD09_RS06780 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS06780 PF00072 Response regulator receiver domain AMD09_RS06785 PF00672 HAMP domain AMD09_RS06785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS06785 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS06795 PF06123 Inner membrane protein CreD AMD09_RS06820 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD09_RS06825 PF01475 Ferric uptake regulator family AMD09_RS06835 PF00529 HlyD membrane-fusion protein of T1SS AMD09_RS06835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD09_RS06840 PF00873 AcrB/AcrD/AcrF family AMD09_RS06845 PF02321 Outer membrane efflux protein AMD09_RS06850 PF00440 Bacterial regulatory proteins, tetR family AMD09_RS06850 PF16859 Tetracyclin repressor-like, C-terminal domain AMD09_RS06860 PF06719 AraC-type transcriptional regulator N-terminus AMD09_RS06860 PF12833 Helix-turn-helix domain AMD09_RS06870 PF03466 LysR substrate binding domain AMD09_RS06870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS06875 PF07690 Major Facilitator Superfamily AMD09_RS06880 PF00248 Aldo/keto reductase family AMD09_RS06890 PF01483 Proprotein convertase P-domain AMD09_RS06890 PF00082 Subtilase family AMD09_RS06900 PF00082 Subtilase family AMD09_RS06900 PF01483 Proprotein convertase P-domain AMD09_RS06910 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS06910 PF00593 TonB dependent receptor AMD09_RS06925 PF00107 Zinc-binding dehydrogenase AMD09_RS06925 PF08240 Alcohol dehydrogenase GroES-like domain AMD09_RS06930 PF00654 Voltage gated chloride channel AMD09_RS06940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMD09_RS06940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD09_RS06990 PF00271 Helicase conserved C-terminal domain AMD09_RS06990 PF00270 DEAD/DEAH box helicase AMD09_RS06990 PF03880 DbpA RNA binding domain AMD09_RS06995 PF08448 PAS fold AMD09_RS06995 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS06995 PF00563 EAL domain AMD09_RS07000 PF01479 S4 domain AMD09_RS07000 PF00849 RNA pseudouridylate synthase AMD09_RS07005 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS07025 PF03737 Aldolase/RraA AMD09_RS07030 PF00144 Beta-lactamase AMD09_RS07035 PF00999 Sodium/hydrogen exchanger family AMD09_RS07040 PF00672 HAMP domain AMD09_RS07040 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS07040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS07045 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS07045 PF00072 Response regulator receiver domain AMD09_RS07050 PF02321 Outer membrane efflux protein AMD09_RS07065 PF00873 AcrB/AcrD/AcrF family AMD09_RS07075 PF00664 ABC transporter transmembrane region AMD09_RS07075 PF00005 ABC transporter AMD09_RS07105 PF03466 LysR substrate binding domain AMD09_RS07105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS07115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD09_RS07120 PF04070 Domain of unknown function (DUF378) AMD09_RS07145 PF00085 Thioredoxin AMD09_RS07155 PF13603 Leucyl-tRNA synthetase, Domain 2 AMD09_RS07155 PF00133 tRNA synthetases class I (I, L, M and V) AMD09_RS07155 PF08264 Anticodon-binding domain of tRNA AMD09_RS07170 PF01467 Cytidylyltransferase-like AMD09_RS07185 PF02590 Predicted SPOUT methyltransferase AMD09_RS07200 PF04402 Protein of unknown function (DUF541) AMD09_RS07205 PF02545 Maf-like protein AMD09_RS07210 PF10150 Ribonuclease E/G family AMD09_RS07210 PF00575 S1 RNA binding domain AMD09_RS07215 PF13116 Protein of unknown function AMD09_RS07215 PF13502 AsmA-like C-terminal region AMD09_RS07225 PF01523 Putative modulator of DNA gyrase AMD09_RS07230 PF04751 Protein of unknown function (DUF615) AMD09_RS07235 PF01523 Putative modulator of DNA gyrase AMD09_RS07245 PF14521 Lysine-specific metallo-endopeptidase AMD09_RS07250 PF00348 Polyprenyl synthetase AMD09_RS07255 PF02609 Exonuclease VII small subunit AMD09_RS07260 PF09179 TilS substrate binding domain AMD09_RS07260 PF11734 TilS substrate C-terminal domain AMD09_RS07260 PF01171 PP-loop family AMD09_RS07265 PF00245 Alkaline phosphatase AMD09_RS07270 PF00375 Sodium:dicarboxylate symporter family AMD09_RS07285 PF00877 NlpC/P60 family AMD09_RS07290 PF00877 NlpC/P60 family AMD09_RS07295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD09_RS07300 PF04235 Protein of unknown function (DUF418) AMD09_RS07305 PF01266 FAD dependent oxidoreductase AMD09_RS07310 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD09_RS07310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD09_RS07315 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMD09_RS07330 PF01431 Peptidase family M13 AMD09_RS07330 PF05649 Peptidase family M13 AMD09_RS07335 PF01431 Peptidase family M13 AMD09_RS07335 PF05649 Peptidase family M13 AMD09_RS07350 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS07350 PF00593 TonB dependent receptor AMD09_RS07355 PF10609 NUBPL iron-transfer P-loop NTPase AMD09_RS07360 PF00692 dUTPase AMD09_RS07380 PF01738 Dienelactone hydrolase family AMD09_RS07385 PF00919 Uncharacterized protein family UPF0004 AMD09_RS07385 PF18693 TRAM domain AMD09_RS07385 PF04055 Radical SAM superfamily AMD09_RS07390 PF03449 Transcription elongation factor, N-terminal AMD09_RS07390 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD09_RS07405 PF00293 NUDIX domain AMD09_RS07410 PF05872 Bacterial protein of unknown function (DUF853) AMD09_RS07420 PF02666 Phosphatidylserine decarboxylase AMD09_RS07425 PF02630 SCO1/SenC AMD09_RS07430 PF05175 Methyltransferase small domain AMD09_RS07435 PF01264 Chorismate synthase AMD09_RS07440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD09_RS07440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD09_RS07445 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD09_RS07445 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMD09_RS07465 PF01416 tRNA pseudouridine synthase AMD09_RS07470 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMD09_RS07475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS07475 PF03466 LysR substrate binding domain AMD09_RS07480 PF00291 Pyridoxal-phosphate dependent enzyme AMD09_RS07490 PF00290 Tryptophan synthase alpha chain AMD09_RS07495 PF17848 Acetyl-coA carboxylase zinc finger domain AMD09_RS07495 PF01039 Carboxyl transferase domain AMD09_RS07500 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD09_RS07500 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD09_RS07500 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD09_RS07500 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD09_RS07520 PF00563 EAL domain AMD09_RS07520 PF03707 Bacterial signalling protein N terminal repeat AMD09_RS07520 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS07535 PF00106 short chain dehydrogenase AMD09_RS07540 PF00121 Triosephosphate isomerase AMD09_RS07555 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMD09_RS07560 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMD09_RS07565 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMD09_RS07570 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMD09_RS07580 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMD09_RS07580 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD09_RS07580 PF10531 SLBB domain AMD09_RS07585 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AMD09_RS07585 PF00384 Molybdopterin oxidoreductase AMD09_RS07585 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD09_RS07590 PF00146 NADH dehydrogenase AMD09_RS07595 PF12838 4Fe-4S dicluster domain AMD09_RS07600 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMD09_RS07605 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMD09_RS07610 PF00361 Proton-conducting membrane transporter AMD09_RS07610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD09_RS07615 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AMD09_RS07615 PF00361 Proton-conducting membrane transporter AMD09_RS07620 PF00361 Proton-conducting membrane transporter AMD09_RS07630 PF17384 RimP C-terminal SH3 domain AMD09_RS07630 PF02576 RimP N-terminal domain AMD09_RS07635 PF08529 NusA N-terminal domain AMD09_RS07635 PF13184 NusA-like KH domain AMD09_RS07635 PF00575 S1 RNA binding domain AMD09_RS07640 PF08364 Bacterial translation initiation factor IF-2 associated region AMD09_RS07640 PF11987 Translation-initiation factor 2 AMD09_RS07640 PF04760 Translation initiation factor IF-2, N-terminal region AMD09_RS07640 PF00009 Elongation factor Tu GTP binding domain AMD09_RS07645 PF02033 Ribosome-binding factor A AMD09_RS07650 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMD09_RS07650 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMD09_RS07650 PF09157 Pseudouridine synthase II TruB, C-terminal AMD09_RS07655 PF00312 Ribosomal protein S15 AMD09_RS07660 PF00575 S1 RNA binding domain AMD09_RS07660 PF03725 3' exoribonuclease family, domain 2 AMD09_RS07660 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMD09_RS07660 PF00013 KH domain AMD09_RS07660 PF01138 3' exoribonuclease family, domain 1 AMD09_RS07670 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMD09_RS07670 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMD09_RS07680 PF00731 AIR carboxylase AMD09_RS07685 PF02222 ATP-grasp domain AMD09_RS07685 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMD09_RS07690 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD09_RS07690 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD09_RS07695 PF00462 Glutaredoxin AMD09_RS07705 PF01914 MarC family integral membrane protein AMD09_RS07710 PF00593 TonB dependent receptor AMD09_RS07715 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AMD09_RS07715 PF11892 Domain of unknown function (DUF3412) AMD09_RS07715 PF03641 Possible lysine decarboxylase AMD09_RS07720 PF06580 Histidine kinase AMD09_RS07720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS07720 PF07694 5TMR of 5TMR-LYT AMD09_RS07745 PF05567 Neisseria PilC beta-propeller domain AMD09_RS07750 PF07963 Prokaryotic N-terminal methylation motif AMD09_RS07750 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor AMD09_RS07760 PF01527 Transposase AMD09_RS07795 PF04002 RadC-like JAB domain AMD09_RS07800 PF05284 Protein of unknown function (DUF736) AMD09_RS07805 PF01381 Helix-turn-helix AMD09_RS07810 PF01527 Transposase AMD09_RS07820 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) AMD09_RS07825 PF00361 Proton-conducting membrane transporter AMD09_RS07825 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMD09_RS07825 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus AMD09_RS07830 PF03466 LysR substrate binding domain AMD09_RS07830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS07850 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS07850 PF00072 Response regulator receiver domain AMD09_RS07865 PF00857 Isochorismatase family AMD09_RS07875 PF07969 Amidohydrolase family AMD09_RS07885 PF05977 Transmembrane secretion effector AMD09_RS07900 PF14824 Sirohaem biosynthesis protein central AMD09_RS07900 PF10414 Sirohaem synthase dimerisation region AMD09_RS07900 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD09_RS07915 PF05974 Domain of unknown function (DUF892) AMD09_RS07930 PF08447 PAS fold AMD09_RS07930 PF08448 PAS fold AMD09_RS07930 PF00563 EAL domain AMD09_RS07930 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS07935 PF12951 Passenger-associated-transport-repeat AMD09_RS07935 PF12951 Passenger-associated-transport-repeat AMD09_RS07940 PF00072 Response regulator receiver domain AMD09_RS07940 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS07945 PF08448 PAS fold AMD09_RS07945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS07945 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS07945 PF13426 PAS domain AMD09_RS07945 PF00072 Response regulator receiver domain AMD09_RS07955 PF00873 AcrB/AcrD/AcrF family AMD09_RS07960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD09_RS07970 PF00082 Subtilase family AMD09_RS07970 PF03797 Autotransporter beta-domain AMD09_RS07985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS07985 PF07694 5TMR of 5TMR-LYT AMD09_RS07985 PF06580 Histidine kinase AMD09_RS07990 PF04397 LytTr DNA-binding domain AMD09_RS07990 PF00072 Response regulator receiver domain AMD09_RS07995 PF00144 Beta-lactamase AMD09_RS08005 PF07995 Glucose / Sorbosone dehydrogenase AMD09_RS08015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD09_RS08025 PF09335 SNARE associated Golgi protein AMD09_RS08030 PF01494 FAD binding domain AMD09_RS08035 PF01527 Transposase AMD09_RS08040 PF13276 HTH-like domain AMD09_RS08040 PF13333 Integrase core domain AMD09_RS08040 PF00665 Integrase core domain AMD09_RS08080 PF17091 Inovirus G7P protein AMD09_RS08100 PF00106 short chain dehydrogenase AMD09_RS08110 PF12697 Alpha/beta hydrolase family AMD09_RS08110 PF08241 Methyltransferase domain AMD09_RS08155 PF01106 NifU-like domain AMD09_RS08160 PF01329 Pterin 4 alpha carbinolamine dehydratase AMD09_RS08170 PF02535 ZIP Zinc transporter AMD09_RS08175 PF11737 Protein of unknown function (DUF3300) AMD09_RS08180 PF01479 S4 domain AMD09_RS08180 PF00849 RNA pseudouridylate synthase AMD09_RS08185 PF00575 S1 RNA binding domain AMD09_RS08185 PF10150 Ribonuclease E/G family AMD09_RS08185 PF12111 Polyribonucleotide phosphorylase C terminal AMD09_RS08190 PF00072 Response regulator receiver domain AMD09_RS08190 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS08195 PF17773 UPF0176 acylphosphatase like domain AMD09_RS08195 PF00581 Rhodanese-like domain AMD09_RS08205 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD09_RS08215 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD09_RS08215 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD09_RS08215 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD09_RS08225 PF00589 Phage integrase family AMD09_RS08230 PF01527 Transposase AMD09_RS08235 PF13276 HTH-like domain AMD09_RS08235 PF13333 Integrase core domain AMD09_RS08235 PF00665 Integrase core domain AMD09_RS08240 PF01527 Transposase AMD09_RS08250 PF00501 AMP-binding enzyme AMD09_RS08250 PF00975 Thioesterase domain AMD09_RS08250 PF00668 Condensation domain AMD09_RS08250 PF13193 AMP-binding enzyme C-terminal domain AMD09_RS08250 PF00550 Phosphopantetheine attachment site AMD09_RS08255 PF00550 Phosphopantetheine attachment site AMD09_RS08255 PF00668 Condensation domain AMD09_RS08255 PF13193 AMP-binding enzyme C-terminal domain AMD09_RS08255 PF00501 AMP-binding enzyme AMD09_RS08270 PF05598 Transposase domain (DUF772) AMD09_RS08270 PF01609 Transposase DDE domain AMD09_RS08285 PF01609 Transposase DDE domain AMD09_RS08285 PF05598 Transposase domain (DUF772) AMD09_RS08290 PF00665 Integrase core domain AMD09_RS08290 PF02796 Helix-turn-helix domain of resolvase AMD09_RS08295 PF01695 IstB-like ATP binding protein AMD09_RS08325 PF18337 RapA N-terminal Tudor like domain AMD09_RS08325 PF18339 RapA N-terminal Tudor like domain 1 AMD09_RS08325 PF00176 SNF2 family N-terminal domain AMD09_RS08325 PF12137 RNA polymerase recycling family C-terminal AMD09_RS08325 PF00271 Helicase conserved C-terminal domain AMD09_RS08330 PF01695 IstB-like ATP binding protein AMD09_RS08335 PF00665 Integrase core domain AMD09_RS08335 PF02796 Helix-turn-helix domain of resolvase AMD09_RS08340 PF00271 Helicase conserved C-terminal domain AMD09_RS08340 PF12137 RNA polymerase recycling family C-terminal AMD09_RS08340 PF18339 RapA N-terminal Tudor like domain 1 AMD09_RS08340 PF18337 RapA N-terminal Tudor like domain AMD09_RS08340 PF00176 SNF2 family N-terminal domain AMD09_RS08345 PF00145 C-5 cytosine-specific DNA methylase AMD09_RS08355 PF01695 IstB-like ATP binding protein AMD09_RS08360 PF00665 Integrase core domain AMD09_RS08360 PF02796 Helix-turn-helix domain of resolvase AMD09_RS08370 PF13614 AAA domain AMD09_RS08405 PF00436 Single-strand binding protein family AMD09_RS08410 PF01751 Toprim domain AMD09_RS08410 PF01131 DNA topoisomerase AMD09_RS08415 PF00145 C-5 cytosine-specific DNA methylase AMD09_RS08430 PF02021 Uncharacterised protein family UPF0102 AMD09_RS08460 PF13936 Helix-turn-helix domain AMD09_RS08460 PF00665 Integrase core domain AMD09_RS08585 PF04002 RadC-like JAB domain AMD09_RS08645 PF04610 TrbL/VirB6 plasmid conjugal transfer protein AMD09_RS08670 PF05598 Transposase domain (DUF772) AMD09_RS08675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS08675 PF03466 LysR substrate binding domain AMD09_RS08680 PF01381 Helix-turn-helix AMD09_RS08690 PF01695 IstB-like ATP binding protein AMD09_RS08695 PF00665 Integrase core domain AMD09_RS08695 PF02796 Helix-turn-helix domain of resolvase AMD09_RS08700 PF00589 Phage integrase family AMD09_RS08700 PF13356 Arm DNA-binding domain AMD09_RS08710 PF01066 CDP-alcohol phosphatidyltransferase AMD09_RS08715 PF01541 GIY-YIG catalytic domain AMD09_RS08715 PF08459 UvrC Helix-hairpin-helix N-terminal AMD09_RS08715 PF02151 UvrB/uvrC motif AMD09_RS08725 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMD09_RS08730 PF02348 Cytidylyltransferase AMD09_RS08735 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMD09_RS08740 PF00005 ABC transporter AMD09_RS08740 PF00664 ABC transporter transmembrane region AMD09_RS08750 PF01618 MotA/TolQ/ExbB proton channel family AMD09_RS08755 PF03772 Competence protein AMD09_RS08755 PF00753 Metallo-beta-lactamase superfamily AMD09_RS08765 PF00005 ABC transporter AMD09_RS08770 PF12704 MacB-like periplasmic core domain AMD09_RS08770 PF02687 FtsX-like permease family AMD09_RS08780 PF03937 Flavinator of succinate dehydrogenase AMD09_RS08785 PF13085 2Fe-2S iron-sulfur cluster binding domain AMD09_RS08795 PF00890 FAD binding domain AMD09_RS08795 PF02910 Fumarate reductase flavoprotein C-term AMD09_RS08800 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD09_RS08805 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMD09_RS08815 PF00005 ABC transporter AMD09_RS08815 PF17912 MalK OB fold domain AMD09_RS08820 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AMD09_RS08820 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AMD09_RS08825 PF02685 Glucokinase AMD09_RS08830 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMD09_RS08835 PF00920 Dehydratase family AMD09_RS08840 PF01081 KDPG and KHG aldolase AMD09_RS08845 PF00873 AcrB/AcrD/AcrF family AMD09_RS08850 PF00873 AcrB/AcrD/AcrF family AMD09_RS08855 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD09_RS08865 PF00034 Cytochrome c AMD09_RS08905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS08905 PF00072 Response regulator receiver domain AMD09_RS08905 PF09308 LuxQ, periplasmic AMD09_RS08905 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS08910 PF00575 S1 RNA binding domain AMD09_RS08910 PF09371 Tex-like protein N-terminal domain AMD09_RS08910 PF17674 HHH domain AMD09_RS08910 PF16921 Tex protein YqgF-like domain AMD09_RS08920 PF00355 Rieske [2Fe-2S] domain AMD09_RS08920 PF01266 FAD dependent oxidoreductase AMD09_RS08935 PF00561 alpha/beta hydrolase fold AMD09_RS08945 PF01066 CDP-alcohol phosphatidyltransferase AMD09_RS08965 PF03618 Kinase/pyrophosphorylase AMD09_RS08970 PF00391 PEP-utilising enzyme, mobile domain AMD09_RS08970 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMD09_RS08970 PF02896 PEP-utilising enzyme, TIM barrel domain AMD09_RS08975 PF05552 Conserved TM helix AMD09_RS08975 PF00924 Mechanosensitive ion channel AMD09_RS08980 PF00929 Exonuclease AMD09_RS08985 PF14437 MafB19-like deaminase AMD09_RS08990 PF01325 Iron dependent repressor, N-terminal DNA binding domain AMD09_RS08990 PF02742 Iron dependent repressor, metal binding and dimerisation domain AMD09_RS08995 PF01566 Natural resistance-associated macrophage protein AMD09_RS09000 PF00561 alpha/beta hydrolase fold AMD09_RS09010 PF12804 MobA-like NTP transferase domain AMD09_RS09015 PF00994 Probable molybdopterin binding domain AMD09_RS09015 PF03454 MoeA C-terminal region (domain IV) AMD09_RS09015 PF03453 MoeA N-terminal region (domain I and II) AMD09_RS09025 PF03372 Endonuclease/Exonuclease/phosphatase family AMD09_RS09035 PF08240 Alcohol dehydrogenase GroES-like domain AMD09_RS09035 PF00107 Zinc-binding dehydrogenase AMD09_RS09035 PF13823 Alcohol dehydrogenase GroES-associated AMD09_RS09060 PF00899 ThiF family AMD09_RS09065 PF00994 Probable molybdopterin binding domain AMD09_RS09065 PF03453 MoeA N-terminal region (domain I and II) AMD09_RS09065 PF03454 MoeA C-terminal region (domain IV) AMD09_RS09070 PF01926 50S ribosome-binding GTPase AMD09_RS09070 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMD09_RS09075 PF13360 PQQ-like domain AMD09_RS09075 PF01011 PQQ enzyme repeat AMD09_RS09085 PF13464 Domain of unknown function (DUF4115) AMD09_RS09095 PF04055 Radical SAM superfamily AMD09_RS09100 PF00334 Nucleoside diphosphate kinase AMD09_RS09110 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD09_RS09110 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD09_RS09110 PF00378 Enoyl-CoA hydratase/isomerase AMD09_RS09115 PF00108 Thiolase, N-terminal domain AMD09_RS09115 PF02803 Thiolase, C-terminal domain AMD09_RS09125 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMD09_RS09130 PF16193 AAA C-terminal domain AMD09_RS09130 PF12002 MgsA AAA+ ATPase C terminal AMD09_RS09130 PF00004 ATPase family associated with various cellular activities (AAA) AMD09_RS09140 PF03548 Outer membrane lipoprotein carrier protein LolA AMD09_RS09150 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMD09_RS09150 PF17854 FtsK alpha domain AMD09_RS09150 PF09397 Ftsk gamma domain AMD09_RS09150 PF01580 FtsK/SpoIIIE family AMD09_RS09155 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD09_RS09165 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMD09_RS09170 PF01176 Translation initiation factor 1A / IF-1 AMD09_RS09175 PF17871 AAA lid domain AMD09_RS09175 PF02861 Clp amino terminal domain, pathogenicity island component AMD09_RS09175 PF10431 C-terminal, D2-small domain, of ClpB protein AMD09_RS09175 PF07724 AAA domain (Cdc48 subfamily) AMD09_RS09175 PF00004 ATPase family associated with various cellular activities (AAA) AMD09_RS09180 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMD09_RS09185 PF00293 NUDIX domain AMD09_RS09195 PF04356 Protein of unknown function (DUF489) AMD09_RS09200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS09200 PF00672 HAMP domain AMD09_RS09200 PF12729 Four helix bundle sensory module for signal transduction AMD09_RS09210 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS09210 PF03707 Bacterial signalling protein N terminal repeat AMD09_RS09210 PF00563 EAL domain AMD09_RS09215 PF07730 Histidine kinase AMD09_RS09215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS09220 PF00563 EAL domain AMD09_RS09220 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS09220 PF03707 Bacterial signalling protein N terminal repeat AMD09_RS09225 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS09225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS09225 PF00989 PAS fold AMD09_RS09225 PF13188 PAS domain AMD09_RS09225 PF13426 PAS domain AMD09_RS09245 PF00072 Response regulator receiver domain AMD09_RS09245 PF01584 CheW-like domain AMD09_RS09255 PF00460 Flagella basal body rod protein AMD09_RS09255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD09_RS09260 PF03963 Flagellar hook capping protein - N-terminal region AMD09_RS09265 PF00460 Flagella basal body rod protein AMD09_RS09265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD09_RS09265 PF07559 Flagellar basal body protein FlaE AMD09_RS09270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD09_RS09270 PF00460 Flagella basal body rod protein AMD09_RS09275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD09_RS09275 PF00460 Flagella basal body rod protein AMD09_RS09280 PF02107 Flagellar L-ring protein AMD09_RS09285 PF02119 Flagellar P-ring protein AMD09_RS09290 PF10135 Rod binding protein AMD09_RS09290 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMD09_RS09295 PF07196 Flagellin hook IN motif AMD09_RS09295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMD09_RS09300 PF00669 Bacterial flagellin N-terminal helical region AMD09_RS09300 PF00700 Bacterial flagellin C-terminal helical region AMD09_RS09305 PF00700 Bacterial flagellin C-terminal helical region AMD09_RS09305 PF00669 Bacterial flagellin N-terminal helical region AMD09_RS09310 PF07196 Flagellin hook IN motif AMD09_RS09310 PF02465 Flagellar hook-associated protein 2 N-terminus AMD09_RS09310 PF07195 Flagellar hook-associated protein 2 C-terminus AMD09_RS09315 PF02561 Flagellar protein FliS AMD09_RS09330 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS09330 PF00072 Response regulator receiver domain AMD09_RS09335 PF04552 Sigma-54, DNA binding domain AMD09_RS09335 PF04963 Sigma-54 factor, core binding domain AMD09_RS09335 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMD09_RS09340 PF01339 CheB methylesterase AMD09_RS09340 PF00072 Response regulator receiver domain AMD09_RS09345 PF00158 Sigma-54 interaction domain AMD09_RS09345 PF02954 Bacterial regulatory protein, Fis family AMD09_RS09345 PF06490 Flagellar regulatory protein FleQ AMD09_RS09350 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD09_RS09360 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD09_RS09360 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD09_RS09395 PF00535 Glycosyl transferase family 2 AMD09_RS09395 PF00534 Glycosyl transferases group 1 AMD09_RS09400 PF02049 Flagellar hook-basal body complex protein FliE AMD09_RS09405 PF01514 Secretory protein of YscJ/FliF family AMD09_RS09405 PF08345 Flagellar M-ring protein C-terminal AMD09_RS09410 PF14841 FliG middle domain AMD09_RS09410 PF14842 FliG N-terminal domain AMD09_RS09410 PF01706 FliG C-terminal domain AMD09_RS09420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD09_RS09420 PF18269 T3SS EscN ATPase C-terminal domain AMD09_RS09440 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMD09_RS09440 PF02154 Flagellar motor switch protein FliM AMD09_RS09445 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMD09_RS09450 PF04347 Flagellar biosynthesis protein, FliO AMD09_RS09455 PF00813 FliP family AMD09_RS09465 PF01313 Bacterial export proteins, family 3 AMD09_RS09470 PF01311 Bacterial export proteins, family 1 AMD09_RS09475 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS09485 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS09490 PF03707 Bacterial signalling protein N terminal repeat AMD09_RS09490 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS09490 PF00563 EAL domain AMD09_RS09495 PF01312 FlhB HrpN YscU SpaS Family AMD09_RS09500 PF00771 FHIPEP family AMD09_RS09505 PF00448 SRP54-type protein, GTPase domain AMD09_RS09510 PF10609 NUBPL iron-transfer P-loop NTPase AMD09_RS09515 PF04545 Sigma-70, region 4 AMD09_RS09515 PF04539 Sigma-70 region 3 AMD09_RS09515 PF04542 Sigma-70 region 2 AMD09_RS09520 PF00072 Response regulator receiver domain AMD09_RS09525 PF04344 Chemotaxis phosphatase, CheZ AMD09_RS09530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS09530 PF01584 CheW-like domain AMD09_RS09530 PF01627 Hpt domain AMD09_RS09530 PF00072 Response regulator receiver domain AMD09_RS09530 PF02895 Signal transducing histidine kinase, homodimeric domain AMD09_RS09540 PF04055 Radical SAM superfamily AMD09_RS09540 PF13186 Iron-sulfur cluster-binding domain AMD09_RS09560 PF01527 Transposase AMD09_RS09565 PF13333 Integrase core domain AMD09_RS09565 PF13276 HTH-like domain AMD09_RS09565 PF00665 Integrase core domain AMD09_RS09580 PF02796 Helix-turn-helix domain of resolvase AMD09_RS09580 PF00665 Integrase core domain AMD09_RS09585 PF01695 IstB-like ATP binding protein AMD09_RS09610 PF12462 DNA helicase IV / RNA helicase N terminal AMD09_RS09610 PF13361 UvrD-like helicase C-terminal domain AMD09_RS09610 PF00580 UvrD/REP helicase N-terminal domain AMD09_RS09685 PF03466 LysR substrate binding domain AMD09_RS09685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS09690 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD09_RS09690 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD09_RS09695 PF03401 Tripartite tricarboxylate transporter family receptor AMD09_RS09710 PF04002 RadC-like JAB domain AMD09_RS09745 PF00589 Phage integrase family AMD09_RS09745 PF13356 Arm DNA-binding domain AMD09_RS09750 PF00958 GMP synthase C terminal domain AMD09_RS09750 PF02540 NAD synthase AMD09_RS09750 PF00117 Glutamine amidotransferase class-I AMD09_RS09755 PF00478 IMP dehydrogenase / GMP reductase domain AMD09_RS09755 PF00571 CBS domain AMD09_RS09760 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMD09_RS09760 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMD09_RS09770 PF00999 Sodium/hydrogen exchanger family AMD09_RS09770 PF02254 TrkA-N domain AMD09_RS09775 PF00483 Nucleotidyl transferase AMD09_RS09780 PF02719 Polysaccharide biosynthesis protein AMD09_RS09785 PF00953 Glycosyl transferase family 4 AMD09_RS09790 PF18073 Rubredoxin metal binding domain AMD09_RS09800 PF00216 Bacterial DNA-binding protein AMD09_RS09805 PF00575 S1 RNA binding domain AMD09_RS09810 PF02224 Cytidylate kinase AMD09_RS09815 PF00444 Ribosomal protein L36 AMD09_RS09825 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMD09_RS09830 PF00795 Carbon-nitrogen hydrolase AMD09_RS09855 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS09860 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS09880 PF00356 Bacterial regulatory proteins, lacI family AMD09_RS09890 PF03795 YCII-related domain AMD09_RS09895 PF02616 Segregation and condensation protein ScpA AMD09_RS09900 PF04079 Segregation and condensation complex subunit ScpB AMD09_RS09905 PF00849 RNA pseudouridylate synthase AMD09_RS09905 PF01479 S4 domain AMD09_RS09920 PF00795 Carbon-nitrogen hydrolase AMD09_RS09925 PF00155 Aminotransferase class I and II AMD09_RS09930 PF00005 ABC transporter AMD09_RS09935 PF03379 CcmB protein AMD09_RS09940 PF01578 Cytochrome C assembly protein AMD09_RS09950 PF03100 CcmE AMD09_RS09955 PF01578 Cytochrome C assembly protein AMD09_RS09955 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMD09_RS09960 PF08534 Redoxin AMD09_RS09965 PF03918 Cytochrome C biogenesis protein AMD09_RS09975 PF00561 alpha/beta hydrolase fold AMD09_RS09980 PF00313 'Cold-shock' DNA-binding domain AMD09_RS09985 PF00664 ABC transporter transmembrane region AMD09_RS09985 PF00005 ABC transporter AMD09_RS09990 PF00005 ABC transporter AMD09_RS09990 PF00664 ABC transporter transmembrane region AMD09_RS09995 PF01654 Cytochrome bd terminal oxidase subunit I AMD09_RS10000 PF02322 Cytochrome bd terminal oxidase subunit II AMD09_RS10020 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD09_RS10020 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMD09_RS10025 PF00171 Aldehyde dehydrogenase family AMD09_RS10030 PF00696 Amino acid kinase family AMD09_RS10030 PF01472 PUA domain AMD09_RS10040 PF00206 Lyase AMD09_RS10045 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMD09_RS10055 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase AMD09_RS10055 PF00696 Amino acid kinase family AMD09_RS10060 PF07687 Peptidase dimerisation domain AMD09_RS10060 PF01546 Peptidase family M20/M25/M40 AMD09_RS10070 PF00764 Arginosuccinate synthase AMD09_RS10075 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD09_RS10075 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD09_RS10085 PF01406 tRNA synthetases class I (C) catalytic domain AMD09_RS10085 PF09190 DALR domain AMD09_RS10090 PF02657 Fe-S metabolism associated domain AMD09_RS10100 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD09_RS10110 PF01809 Putative membrane protein insertion efficiency factor AMD09_RS10115 PF01979 Amidohydrolase family AMD09_RS10120 PF08460 Bacterial SH3 domain AMD09_RS10120 PF01551 Peptidase family M23 AMD09_RS10135 PF06751 Ethanolamine ammonia lyase large subunit (EutB) AMD09_RS10140 PF05985 Ethanolamine ammonia-lyase light chain (EutC) AMD09_RS10150 PF00753 Metallo-beta-lactamase superfamily AMD09_RS10170 PF01527 Transposase AMD09_RS10175 PF00295 Glycosyl hydrolases family 28 AMD09_RS10185 PF13419 Haloacid dehalogenase-like hydrolase AMD09_RS10195 PF01979 Amidohydrolase family AMD09_RS10205 PF01132 Elongation factor P (EF-P) OB domain AMD09_RS10205 PF08207 Elongation factor P (EF-P) KOW-like domain AMD09_RS10205 PF09285 Elongation factor P, C-terminal AMD09_RS10210 PF04055 Radical SAM superfamily AMD09_RS10215 PF00563 EAL domain AMD09_RS10215 PF13188 PAS domain AMD09_RS10215 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS10215 PF03707 Bacterial signalling protein N terminal repeat AMD09_RS10225 PF00588 SpoU rRNA Methylase family AMD09_RS10230 PF00459 Inositol monophosphatase family AMD09_RS10235 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMD09_RS10235 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMD09_RS10240 PF00545 ribonuclease AMD09_RS10250 PF12848 ABC transporter AMD09_RS10250 PF00005 ABC transporter AMD09_RS10250 PF16326 ABC transporter C-terminal domain AMD09_RS10255 PF00271 Helicase conserved C-terminal domain AMD09_RS10255 PF00270 DEAD/DEAH box helicase AMD09_RS10255 PF03880 DbpA RNA binding domain AMD09_RS10260 PF00156 Phosphoribosyl transferase domain AMD09_RS10265 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMD09_RS10270 PF00135 Carboxylesterase family AMD09_RS10275 PF14497 Glutathione S-transferase, C-terminal domain AMD09_RS10275 PF02798 Glutathione S-transferase, N-terminal domain AMD09_RS10280 PF00313 'Cold-shock' DNA-binding domain AMD09_RS10285 PF07152 YaeQ protein AMD09_RS10295 PF00072 Response regulator receiver domain AMD09_RS10295 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS10295 PF00563 EAL domain AMD09_RS10300 PF01435 Peptidase family M48 AMD09_RS10305 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD09_RS10310 PF00106 short chain dehydrogenase AMD09_RS10315 PF05233 PHB accumulation regulatory domain AMD09_RS10315 PF07879 PHB/PHA accumulation regulator DNA-binding domain AMD09_RS10330 PF01119 DNA mismatch repair protein, C-terminal domain AMD09_RS10330 PF08676 MutL C terminal dimerisation domain AMD09_RS10335 PF11741 AMIN domain AMD09_RS10335 PF01520 N-acetylmuramoyl-L-alanine amidase AMD09_RS10340 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMD09_RS10345 PF01256 Carbohydrate kinase AMD09_RS10345 PF03853 YjeF-related protein N-terminus AMD09_RS10350 PF08331 Domain of unknown function (DUF1730) AMD09_RS10355 PF02601 Exonuclease VII, large subunit AMD09_RS10355 PF13742 OB-fold nucleic acid binding domain AMD09_RS10365 PF03781 Sulfatase-modifying factor enzyme 1 AMD09_RS10370 PF00570 HRDC domain AMD09_RS10370 PF01612 3'-5' exonuclease AMD09_RS10375 PF04679 ATP dependent DNA ligase C terminal region AMD09_RS10375 PF13298 DNA polymerase Ligase (LigD) AMD09_RS10375 PF01068 ATP dependent DNA ligase domain AMD09_RS10395 PF00589 Phage integrase family AMD09_RS10420 PF05598 Transposase domain (DUF772) AMD09_RS10430 PF01527 Transposase AMD09_RS10450 PF00171 Aldehyde dehydrogenase family AMD09_RS10450 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMD09_RS10450 PF01619 Proline dehydrogenase AMD09_RS10450 PF14850 DNA-binding domain of Proline dehydrogenase AMD09_RS10460 PF01527 Transposase AMD09_RS10465 PF13276 HTH-like domain AMD09_RS10465 PF13333 Integrase core domain AMD09_RS10465 PF00665 Integrase core domain AMD09_RS10470 PF02796 Helix-turn-helix domain of resolvase AMD09_RS10470 PF00239 Resolvase, N terminal domain AMD09_RS10485 PF02384 N-6 DNA Methylase AMD09_RS10490 PF09572 XamI restriction endonuclease AMD09_RS10545 PF01584 CheW-like domain AMD09_RS10550 PF00672 HAMP domain AMD09_RS10550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS10550 PF02203 Tar ligand binding domain homologue AMD09_RS10555 PF02245 Methylpurine-DNA glycosylase (MPG) AMD09_RS10560 PF00271 Helicase conserved C-terminal domain AMD09_RS10560 PF00270 DEAD/DEAH box helicase AMD09_RS10560 PF08494 DEAD/H associated AMD09_RS10575 PF04386 Stringent starvation protein B AMD09_RS10580 PF00043 Glutathione S-transferase, C-terminal domain AMD09_RS10580 PF02798 Glutathione S-transferase, N-terminal domain AMD09_RS10585 PF02167 Cytochrome C1 family AMD09_RS10590 PF00033 Cytochrome b/b6/petB AMD09_RS10590 PF00032 Cytochrome b(C-terminal)/b6/petD AMD09_RS10595 PF00355 Rieske [2Fe-2S] domain AMD09_RS10595 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMD09_RS10600 PF01464 Transglycosylase SLT domain AMD09_RS10615 PF01938 TRAM domain AMD09_RS10615 PF04055 Radical SAM superfamily AMD09_RS10615 PF00919 Uncharacterized protein family UPF0004 AMD09_RS10620 PF02562 PhoH-like protein AMD09_RS10630 PF02130 Uncharacterized protein family UPF0054 AMD09_RS10640 PF03471 Transporter associated domain AMD09_RS10640 PF00571 CBS domain AMD09_RS10655 PF00171 Aldehyde dehydrogenase family AMD09_RS10665 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS10670 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS10675 PF08402 TOBE domain AMD09_RS10675 PF00005 ABC transporter AMD09_RS10680 PF02321 Outer membrane efflux protein AMD09_RS10685 PF07690 Major Facilitator Superfamily AMD09_RS10690 PF13533 Biotin-lipoyl like AMD09_RS10695 PF13416 Bacterial extracellular solute-binding protein AMD09_RS10700 PF00202 Aminotransferase class-III AMD09_RS10705 PF00120 Glutamine synthetase, catalytic domain AMD09_RS10710 PF07722 Peptidase C26 AMD09_RS10715 PF00120 Glutamine synthetase, catalytic domain AMD09_RS10720 PF01266 FAD dependent oxidoreductase AMD09_RS10725 PF00072 Response regulator receiver domain AMD09_RS10725 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS10730 PF01814 Hemerythrin HHE cation binding domain AMD09_RS10735 PF00083 Sugar (and other) transporter AMD09_RS10735 PF07690 Major Facilitator Superfamily AMD09_RS10745 PF00384 Molybdopterin oxidoreductase AMD09_RS10750 PF02634 FdhD/NarQ family AMD09_RS10755 PF07690 Major Facilitator Superfamily AMD09_RS10760 PF00202 Aminotransferase class-III AMD09_RS10770 PF04286 Protein of unknown function (DUF445) AMD09_RS10775 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS10775 PF00672 HAMP domain AMD09_RS10775 PF01627 Hpt domain AMD09_RS10775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS10775 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD09_RS10775 PF00072 Response regulator receiver domain AMD09_RS10780 PF00072 Response regulator receiver domain AMD09_RS10785 PF07690 Major Facilitator Superfamily AMD09_RS10790 PF05088 Bacterial NAD-glutamate dehydrogenase AMD09_RS10800 PF00529 HlyD membrane-fusion protein of T1SS AMD09_RS10800 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD09_RS10805 PF00873 AcrB/AcrD/AcrF family AMD09_RS10810 PF00356 Bacterial regulatory proteins, lacI family AMD09_RS10815 PF05524 PEP-utilising enzyme, N-terminal AMD09_RS10815 PF00391 PEP-utilising enzyme, mobile domain AMD09_RS10815 PF00381 PTS HPr component phosphorylation site AMD09_RS10815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD09_RS10815 PF02896 PEP-utilising enzyme, TIM barrel domain AMD09_RS10820 PF00294 pfkB family carbohydrate kinase AMD09_RS10825 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMD09_RS10860 PF07549 SecD/SecF GG Motif AMD09_RS10860 PF02355 Protein export membrane protein AMD09_RS10865 PF13721 SecD export protein N-terminal TM region AMD09_RS10865 PF02355 Protein export membrane protein AMD09_RS10865 PF07549 SecD/SecF GG Motif AMD09_RS10870 PF02699 Preprotein translocase subunit AMD09_RS10875 PF01702 Queuine tRNA-ribosyltransferase AMD09_RS10880 PF02547 Queuosine biosynthesis protein AMD09_RS10925 PF02927 Cellulase N-terminal ig-like domain AMD09_RS10925 PF00759 Glycosyl hydrolase family 9 AMD09_RS10940 PF00037 4Fe-4S binding domain AMD09_RS10955 PF01467 Cytidylyltransferase-like AMD09_RS10965 PF00183 Hsp90 protein AMD09_RS10965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS10980 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS10980 PF00593 TonB dependent receptor AMD09_RS10990 PF04616 Glycosyl hydrolases family 43 AMD09_RS10995 PF07532 Bacterial Ig-like domain (group 4) AMD09_RS11000 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS11000 PF00593 TonB dependent receptor AMD09_RS11010 PF09286 Pro-kumamolisin, activation domain AMD09_RS11010 PF00082 Subtilase family AMD09_RS11035 PF13520 Amino acid permease AMD09_RS11050 PF01321 Creatinase/Prolidase N-terminal domain AMD09_RS11050 PF00557 Metallopeptidase family M24 AMD09_RS11055 PF00171 Aldehyde dehydrogenase family AMD09_RS11060 PF00701 Dihydrodipicolinate synthetase family AMD09_RS11065 PF04324 BFD-like [2Fe-2S] binding domain AMD09_RS11065 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD09_RS11075 PF01266 FAD dependent oxidoreductase AMD09_RS11080 PF05544 Proline racemase AMD09_RS11090 PF00448 SRP54-type protein, GTPase domain AMD09_RS11090 PF02881 SRP54-type protein, helical bundle domain AMD09_RS11095 PF10576 Iron-sulfur binding domain of endonuclease III AMD09_RS11095 PF00633 Helix-hairpin-helix motif AMD09_RS11095 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD09_RS11095 PF14815 NUDIX domain AMD09_RS11100 PF04362 Bacterial Fe(2+) trafficking AMD09_RS11105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS11105 PF00072 Response regulator receiver domain AMD09_RS11105 PF13426 PAS domain AMD09_RS11135 PF08212 Lipocalin-like domain AMD09_RS11145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD09_RS11145 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMD09_RS11145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD09_RS11145 PF02770 Acyl-CoA dehydrogenase, middle domain AMD09_RS11155 PF02780 Transketolase, C-terminal domain AMD09_RS11155 PF02779 Transketolase, pyrimidine binding domain AMD09_RS11155 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMD09_RS11175 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AMD09_RS11180 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMD09_RS11180 PF00753 Metallo-beta-lactamase superfamily AMD09_RS11185 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMD09_RS11185 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMD09_RS11200 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMD09_RS11215 PF14667 Polysaccharide biosynthesis C-terminal domain AMD09_RS11225 PF13439 Glycosyltransferase Family 4 AMD09_RS11225 PF00534 Glycosyl transferases group 1 AMD09_RS11245 PF02397 Bacterial sugar transferase AMD09_RS11265 PF13411 MerR HTH family regulatory protein AMD09_RS11270 PF00216 Bacterial DNA-binding protein AMD09_RS11275 PF01588 Putative tRNA binding domain AMD09_RS11275 PF03147 Ferredoxin-fold anticodon binding domain AMD09_RS11275 PF03484 tRNA synthetase B5 domain AMD09_RS11275 PF03483 B3/4 domain AMD09_RS11275 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMD09_RS11280 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMD09_RS11280 PF01409 tRNA synthetases class II core domain (F) AMD09_RS11285 PF00453 Ribosomal protein L20 AMD09_RS11290 PF01632 Ribosomal protein L35 AMD09_RS11295 PF00707 Translation initiation factor IF-3, C-terminal domain AMD09_RS11295 PF05198 Translation initiation factor IF-3, N-terminal domain AMD09_RS11300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD09_RS11300 PF03129 Anticodon binding domain AMD09_RS11300 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD09_RS11300 PF02824 TGS domain AMD09_RS11305 PF00356 Bacterial regulatory proteins, lacI family AMD09_RS11310 PF00128 Alpha amylase, catalytic domain AMD09_RS11310 PF00686 Starch binding domain AMD09_RS11315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMD09_RS11325 PF14508 Glycosyl-hydrolase 97 N-terminal AMD09_RS11325 PF10566 Glycoside hydrolase 97 AMD09_RS11325 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation AMD09_RS11340 PF00128 Alpha amylase, catalytic domain AMD09_RS11345 PF01527 Transposase AMD09_RS11360 PF00083 Sugar (and other) transporter AMD09_RS11370 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMD09_RS11370 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMD09_RS11380 PF16338 Domain of unknown function (DUF4968) AMD09_RS11380 PF17137 Domain of unknown function (DUF5110) AMD09_RS11380 PF01055 Glycosyl hydrolases family 31 AMD09_RS11395 PF03442 Carbohydrate binding domain X2 AMD09_RS11395 PF00942 Cellulose binding domain AMD09_RS11410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS11410 PF03466 LysR substrate binding domain AMD09_RS11420 PF01081 KDPG and KHG aldolase AMD09_RS11425 PF13378 Enolase C-terminal domain-like AMD09_RS11425 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD09_RS11430 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD09_RS11435 PF05035 2-keto-3-deoxy-galactonokinase AMD09_RS11440 PF00037 4Fe-4S binding domain AMD09_RS11440 PF11953 Domain of unknown function (DUF3470) AMD09_RS11450 PF00701 Dihydrodipicolinate synthetase family AMD09_RS11465 PF00578 AhpC/TSA family AMD09_RS11470 PF02562 PhoH-like protein AMD09_RS11470 PF13638 PIN domain AMD09_RS11485 PF08543 Phosphomethylpyrimidine kinase AMD09_RS11485 PF02581 Thiamine monophosphate synthase AMD09_RS11510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS11510 PF03466 LysR substrate binding domain AMD09_RS11520 PF02678 Pirin AMD09_RS11520 PF17954 Quercetinase C-terminal cupin domain AMD09_RS11525 PF13426 PAS domain AMD09_RS11525 PF08447 PAS fold AMD09_RS11525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS11535 PF02599 Global regulator protein family AMD09_RS11540 PF01411 tRNA synthetases class II (A) AMD09_RS11540 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMD09_RS11540 PF02272 DHHA1 domain AMD09_RS11545 PF02631 RecX family AMD09_RS11550 PF00154 recA bacterial DNA recombination protein AMD09_RS11555 PF00717 Peptidase S24-like AMD09_RS11555 PF01726 LexA DNA binding domain AMD09_RS11560 PF03109 ABC1 family AMD09_RS11565 PF02464 Competence-damaged protein AMD09_RS11570 PF01926 50S ribosome-binding GTPase AMD09_RS11570 PF13167 GTP-binding GTPase N-terminal AMD09_RS11570 PF16360 GTP-binding GTPase Middle Region AMD09_RS11575 PF17209 Hfq protein AMD09_RS11585 PF00809 Pterin binding enzyme AMD09_RS11590 PF00004 ATPase family associated with various cellular activities (AAA) AMD09_RS11590 PF01434 Peptidase family M41 AMD09_RS11590 PF17862 AAA+ lid domain AMD09_RS11590 PF06480 FtsH Extracellular AMD09_RS11595 PF01728 FtsJ-like methyltransferase AMD09_RS11600 PF01985 CRS1 / YhbY (CRM) domain AMD09_RS11605 PF04430 Protein of unknown function (DUF498/DUF598) AMD09_RS11610 PF01476 LysM domain AMD09_RS11610 PF01551 Peptidase family M23 AMD09_RS11615 PF09335 SNARE associated Golgi protein AMD09_RS11625 PF01975 Survival protein SurE AMD09_RS11630 PF01713 Smr domain AMD09_RS11635 PF01142 tRNA pseudouridine synthase D (TruD) AMD09_RS11640 PF02542 YgbB family AMD09_RS11645 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMD09_RS11650 PF04977 Septum formation initiator AMD09_RS11655 PF03952 Enolase, N-terminal domain AMD09_RS11655 PF00113 Enolase, C-terminal TIM barrel domain AMD09_RS11665 PF00793 DAHP synthetase I family AMD09_RS11670 PF06418 CTP synthase N-terminus AMD09_RS11670 PF00117 Glutamine amidotransferase class-I AMD09_RS11680 PF00986 DNA gyrase B subunit, carboxyl terminus AMD09_RS11680 PF01751 Toprim domain AMD09_RS11680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS11680 PF00204 DNA gyrase B AMD09_RS11695 PF01384 Phosphate transporter family AMD09_RS11705 PF01595 Cyclin M transmembrane N-terminal domain AMD09_RS11705 PF03471 Transporter associated domain AMD09_RS11705 PF00571 CBS domain AMD09_RS11720 PF00296 Luciferase-like monooxygenase AMD09_RS11725 PF07690 Major Facilitator Superfamily AMD09_RS11730 PF00664 ABC transporter transmembrane region AMD09_RS11730 PF00005 ABC transporter AMD09_RS11735 PF00005 ABC transporter AMD09_RS11750 PF13579 Glycosyl transferase 4-like domain AMD09_RS11750 PF00534 Glycosyl transferases group 1 AMD09_RS11770 PF08241 Methyltransferase domain AMD09_RS11785 PF00535 Glycosyl transferase family 2 AMD09_RS11790 PF01943 Polysaccharide biosynthesis protein AMD09_RS11795 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMD09_RS11815 PF05523 WxcM-like, C-terminal AMD09_RS11830 PF00034 Cytochrome c AMD09_RS11845 PF04542 Sigma-70 region 2 AMD09_RS11845 PF08281 Sigma-70, region 4 AMD09_RS11855 PF00082 Subtilase family AMD09_RS11860 PF01578 Cytochrome C assembly protein AMD09_RS11870 PF03100 CcmE AMD09_RS11875 PF01578 Cytochrome C assembly protein AMD09_RS11875 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMD09_RS11880 PF08534 Redoxin AMD09_RS11885 PF03918 Cytochrome C biogenesis protein AMD09_RS11895 PF13426 PAS domain AMD09_RS11895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS11895 PF00072 Response regulator receiver domain AMD09_RS11900 PF06745 KaiC AMD09_RS11905 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD09_RS11905 PF00072 Response regulator receiver domain AMD09_RS11905 PF00672 HAMP domain AMD09_RS11905 PF01627 Hpt domain AMD09_RS11905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS11905 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS11910 PF13188 PAS domain AMD09_RS11910 PF00072 Response regulator receiver domain AMD09_RS11910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS11910 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS11910 PF08448 PAS fold AMD09_RS11930 PF01494 FAD binding domain AMD09_RS11935 PF02203 Tar ligand binding domain homologue AMD09_RS11935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS11935 PF00672 HAMP domain AMD09_RS11960 PF01527 Transposase AMD09_RS11965 PF01381 Helix-turn-helix AMD09_RS11970 PF05284 Protein of unknown function (DUF736) AMD09_RS11975 PF04002 RadC-like JAB domain AMD09_RS12000 PF00589 Phage integrase family AMD09_RS12000 PF13356 Arm DNA-binding domain AMD09_RS12015 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS12015 PF00593 TonB dependent receptor AMD09_RS12030 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AMD09_RS12055 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS12055 PF00593 TonB dependent receptor AMD09_RS12065 PF10947 Protein of unknown function (DUF2628) AMD09_RS12075 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) AMD09_RS12075 PF00722 Glycosyl hydrolases family 16 AMD09_RS12090 PF00664 ABC transporter transmembrane region AMD09_RS12090 PF03412 Peptidase C39 family AMD09_RS12090 PF00005 ABC transporter AMD09_RS12100 PF13614 AAA domain AMD09_RS12145 PF00145 C-5 cytosine-specific DNA methylase AMD09_RS12195 PF06250 YhcG PDDEXK nuclease domain AMD09_RS12195 PF17761 DUF1016 N-terminal domain AMD09_RS12200 PF01527 Transposase AMD09_RS12210 PF13333 Integrase core domain AMD09_RS12210 PF00665 Integrase core domain AMD09_RS12210 PF13276 HTH-like domain AMD09_RS12225 PF01695 IstB-like ATP binding protein AMD09_RS12265 PF03793 PASTA domain AMD09_RS12265 PF00069 Protein kinase domain AMD09_RS12280 PF01618 MotA/TolQ/ExbB proton channel family AMD09_RS12285 PF00691 OmpA family AMD09_RS12285 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMD09_RS12290 PF13614 AAA domain AMD09_RS12295 PF01584 CheW-like domain AMD09_RS12305 PF00072 Response regulator receiver domain AMD09_RS12310 PF01584 CheW-like domain AMD09_RS12310 PF01627 Hpt domain AMD09_RS12310 PF09078 CheY binding AMD09_RS12310 PF02895 Signal transducing histidine kinase, homodimeric domain AMD09_RS12310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS12315 PF02203 Tar ligand binding domain homologue AMD09_RS12315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12315 PF00672 HAMP domain AMD09_RS12325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12325 PF08269 Cache domain AMD09_RS12325 PF08269 Cache domain AMD09_RS12325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12330 PF00672 HAMP domain AMD09_RS12330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12330 PF02203 Tar ligand binding domain homologue AMD09_RS12340 PF00672 HAMP domain AMD09_RS12340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12340 PF02203 Tar ligand binding domain homologue AMD09_RS12345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12345 PF00672 HAMP domain AMD09_RS12350 PF02203 Tar ligand binding domain homologue AMD09_RS12350 PF00672 HAMP domain AMD09_RS12350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12355 PF00672 HAMP domain AMD09_RS12355 PF02203 Tar ligand binding domain homologue AMD09_RS12355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12365 PF02203 Tar ligand binding domain homologue AMD09_RS12365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12365 PF00672 HAMP domain AMD09_RS12370 PF00672 HAMP domain AMD09_RS12370 PF02203 Tar ligand binding domain homologue AMD09_RS12370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12375 PF00672 HAMP domain AMD09_RS12375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12375 PF02203 Tar ligand binding domain homologue AMD09_RS12380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12380 PF00672 HAMP domain AMD09_RS12380 PF02203 Tar ligand binding domain homologue AMD09_RS12385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12385 PF02203 Tar ligand binding domain homologue AMD09_RS12385 PF00672 HAMP domain AMD09_RS12390 PF07238 PilZ domain AMD09_RS12390 PF07317 Flagellar regulator YcgR AMD09_RS12395 PF01584 CheW-like domain AMD09_RS12405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS12405 PF02203 Tar ligand binding domain homologue AMD09_RS12405 PF00672 HAMP domain AMD09_RS12410 PF01739 CheR methyltransferase, SAM binding domain AMD09_RS12410 PF03705 CheR methyltransferase, all-alpha domain AMD09_RS12415 PF03975 CheD chemotactic sensory transduction AMD09_RS12420 PF01339 CheB methylesterase AMD09_RS12420 PF00072 Response regulator receiver domain AMD09_RS12425 PF00563 EAL domain AMD09_RS12425 PF03707 Bacterial signalling protein N terminal repeat AMD09_RS12425 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS12430 PF00561 alpha/beta hydrolase fold AMD09_RS12435 PF00330 Aconitase family (aconitate hydratase) AMD09_RS12435 PF06434 Aconitate hydratase 2 N-terminus AMD09_RS12435 PF11791 Aconitate B N-terminal domain AMD09_RS12450 PF00330 Aconitase family (aconitate hydratase) AMD09_RS12450 PF00694 Aconitase C-terminal domain AMD09_RS12460 PF00501 AMP-binding enzyme AMD09_RS12460 PF13193 AMP-binding enzyme C-terminal domain AMD09_RS12465 PF00378 Enoyl-CoA hydratase/isomerase AMD09_RS12470 PF01627 Hpt domain AMD09_RS12470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS12470 PF00072 Response regulator receiver domain AMD09_RS12470 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS12475 PF00072 Response regulator receiver domain AMD09_RS12480 PF01336 OB-fold nucleic acid binding domain AMD09_RS12480 PF00152 tRNA synthetases class II (D, K and N) AMD09_RS12485 PF00472 RF-1 domain AMD09_RS12485 PF03462 PCRF domain AMD09_RS12490 PF04397 LytTr DNA-binding domain AMD09_RS12490 PF00072 Response regulator receiver domain AMD09_RS12535 PF17768 RecJ OB domain AMD09_RS12535 PF01368 DHH family AMD09_RS12535 PF02272 DHHA1 domain AMD09_RS12545 PF03449 Transcription elongation factor, N-terminal AMD09_RS12545 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD09_RS12550 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD09_RS12550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD09_RS12550 PF02142 MGS-like domain AMD09_RS12560 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMD09_RS12560 PF00117 Glutamine amidotransferase class-I AMD09_RS12565 PF01113 Dihydrodipicolinate reductase, N-terminus AMD09_RS12565 PF05173 Dihydrodipicolinate reductase, C-terminus AMD09_RS12570 PF03473 MOSC domain AMD09_RS12570 PF03475 3-alpha domain AMD09_RS12575 PF00155 Aminotransferase class I and II AMD09_RS12590 PF07664 Ferrous iron transport protein B C terminus AMD09_RS12590 PF07670 Nucleoside recognition AMD09_RS12590 PF02421 Ferrous iron transport protein B AMD09_RS12600 PF00378 Enoyl-CoA hydratase/isomerase AMD09_RS12610 PF00682 HMGL-like AMD09_RS12615 PF00106 short chain dehydrogenase AMD09_RS12620 PF08207 Elongation factor P (EF-P) KOW-like domain AMD09_RS12620 PF09285 Elongation factor P, C-terminal AMD09_RS12620 PF01132 Elongation factor P (EF-P) OB domain AMD09_RS12640 PF02913 FAD linked oxidases, C-terminal domain AMD09_RS12640 PF01565 FAD binding domain AMD09_RS12645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMD09_RS12645 PF01842 ACT domain AMD09_RS12645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMD09_RS12655 PF13520 Amino acid permease AMD09_RS12660 PF13520 Amino acid permease AMD09_RS12665 PF00596 Class II Aldolase and Adducin N-terminal domain AMD09_RS12670 PF03079 ARD/ARD' family AMD09_RS12690 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMD09_RS12690 PF01502 Phosphoribosyl-AMP cyclohydrolase AMD09_RS12695 PF00977 Histidine biosynthesis protein AMD09_RS12700 PF00977 Histidine biosynthesis protein AMD09_RS12705 PF00117 Glutamine amidotransferase class-I AMD09_RS12710 PF00475 Imidazoleglycerol-phosphate dehydratase AMD09_RS12715 PF00155 Aminotransferase class I and II AMD09_RS12720 PF00815 Histidinol dehydrogenase AMD09_RS12725 PF01634 ATP phosphoribosyltransferase AMD09_RS12725 PF08029 HisG, C-terminal domain AMD09_RS12735 PF03129 Anticodon binding domain AMD09_RS12735 PF13393 Histidyl-tRNA synthetase AMD09_RS12740 PF13545 Crp-like helix-turn-helix domain AMD09_RS12740 PF00027 Cyclic nucleotide-binding domain AMD09_RS12750 PF14821 Threonine synthase N terminus AMD09_RS12750 PF00291 Pyridoxal-phosphate dependent enzyme AMD09_RS12760 PF00288 GHMP kinases N terminal domain AMD09_RS12760 PF08544 GHMP kinases C terminal AMD09_RS12765 PF01842 ACT domain AMD09_RS12765 PF00742 Homoserine dehydrogenase AMD09_RS12765 PF00696 Amino acid kinase family AMD09_RS12765 PF13840 ACT domain AMD09_RS12765 PF03447 Homoserine dehydrogenase, NAD binding domain AMD09_RS12775 PF05860 haemagglutination activity domain AMD09_RS12775 PF05594 Haemagluttinin repeat AMD09_RS12775 PF13018 Extended Signal Peptide of Type V secretion system AMD09_RS12775 PF13332 Hemagglutinin repeat AMD09_RS12775 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain AMD09_RS12780 PF04829 Pre-toxin domain with VENN motif AMD09_RS12780 PF13332 Hemagglutinin repeat AMD09_RS12780 PF05594 Haemagluttinin repeat AMD09_RS12785 PF04829 Pre-toxin domain with VENN motif AMD09_RS12785 PF13332 Hemagglutinin repeat AMD09_RS12785 PF05594 Haemagluttinin repeat AMD09_RS12790 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMD09_RS12790 PF08479 POTRA domain, ShlB-type AMD09_RS12790 PF17287 POTRA domain AMD09_RS12800 PF01522 Polysaccharide deacetylase AMD09_RS12800 PF14883 Hypothetical glycosyl hydrolase family 13 AMD09_RS12805 PF00535 Glycosyl transferase family 2 AMD09_RS12820 PF00171 Aldehyde dehydrogenase family AMD09_RS12835 PF01180 Dihydroorotate dehydrogenase AMD09_RS12840 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMD09_RS12840 PF01565 FAD binding domain AMD09_RS12845 PF00892 EamA-like transporter family AMD09_RS12850 PF01177 Asp/Glu/Hydantoin racemase AMD09_RS12855 PF07690 Major Facilitator Superfamily AMD09_RS12860 PF01569 PAP2 superfamily AMD09_RS12865 PF04551 GcpE protein AMD09_RS12875 PF00072 Response regulator receiver domain AMD09_RS12880 PF00150 Cellulase (glycosyl hydrolase family 5) AMD09_RS12880 PF02013 Cellulose or protein binding domain AMD09_RS12885 PF01590 GAF domain AMD09_RS12885 PF00360 Phytochrome region AMD09_RS12885 PF00563 EAL domain AMD09_RS12885 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS12890 PF00474 Sodium:solute symporter family AMD09_RS12895 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD09_RS12895 PF14310 Fibronectin type III-like domain AMD09_RS12895 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD09_RS12915 PF00342 Phosphoglucose isomerase AMD09_RS12920 PF02261 Aspartate decarboxylase AMD09_RS12925 PF02569 Pantoate-beta-alanine ligase AMD09_RS12930 PF02548 Ketopantoate hydroxymethyltransferase AMD09_RS12935 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD09_RS12940 PF01743 Poly A polymerase head domain AMD09_RS12940 PF12626 Polymerase A arginine-rich C-terminus AMD09_RS12940 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD09_RS12950 PF02649 Type I GTP cyclohydrolase folE2 AMD09_RS12955 PF01520 N-acetylmuramoyl-L-alanine amidase AMD09_RS12960 PF00128 Alpha amylase, catalytic domain AMD09_RS12965 PF01527 Transposase AMD09_RS13005 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AMD09_RS13020 PF01464 Transglycosylase SLT domain AMD09_RS13025 PF00437 Type II/IV secretion system protein AMD09_RS13030 PF03743 Bacterial conjugation TrbI-like protein AMD09_RS13050 PF02534 Type IV secretory system Conjugative DNA transfer AMD09_RS13065 PF17757 UvrB interaction domain AMD09_RS13065 PF02151 UvrB/uvrC motif AMD09_RS13065 PF12344 Ultra-violet resistance protein B AMD09_RS13065 PF04851 Type III restriction enzyme, res subunit AMD09_RS13065 PF00271 Helicase conserved C-terminal domain AMD09_RS13100 PF01527 Transposase AMD09_RS13110 PF00665 Integrase core domain AMD09_RS13110 PF13333 Integrase core domain AMD09_RS13110 PF13276 HTH-like domain AMD09_RS13140 PF03466 LysR substrate binding domain AMD09_RS13140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS13145 PF02525 Flavodoxin-like fold AMD09_RS13150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD09_RS13150 PF02403 Seryl-tRNA synthetase N-terminal domain AMD09_RS13155 PF03544 Gram-negative bacterial TonB protein C-terminal AMD09_RS13165 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD09_RS13170 PF00800 Prephenate dehydratase AMD09_RS13170 PF01842 ACT domain AMD09_RS13170 PF01817 Chorismate mutase type II AMD09_RS13175 PF00266 Aminotransferase class-V AMD09_RS13180 PF00174 Oxidoreductase molybdopterin binding domain AMD09_RS13185 PF01794 Ferric reductase like transmembrane component AMD09_RS13215 PF00392 Bacterial regulatory proteins, gntR family AMD09_RS13215 PF07702 UTRA domain AMD09_RS13230 PF07969 Amidohydrolase family AMD09_RS13235 PF00221 Aromatic amino acid lyase AMD09_RS13245 PF17391 Urocanase N-terminal domain AMD09_RS13245 PF17392 Urocanase C-terminal domain AMD09_RS13245 PF01175 Urocanase Rossmann-like domain AMD09_RS13255 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD09_RS13255 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD09_RS13260 PF01008 Initiation factor 2 subunit family AMD09_RS13270 PF00152 tRNA synthetases class II (D, K and N) AMD09_RS13275 PF03120 NAD-dependent DNA ligase OB-fold domain AMD09_RS13275 PF12826 Helix-hairpin-helix motif AMD09_RS13275 PF01653 NAD-dependent DNA ligase adenylation domain AMD09_RS13275 PF00533 BRCA1 C Terminus (BRCT) domain AMD09_RS13275 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMD09_RS13280 PF00155 Aminotransferase class I and II AMD09_RS13290 PF04354 ZipA, C-terminal FtsZ-binding domain AMD09_RS13295 PF02463 RecF/RecN/SMC N terminal domain AMD09_RS13300 PF03948 Ribosomal protein L9, C-terminal domain AMD09_RS13300 PF01281 Ribosomal protein L9, N-terminal domain AMD09_RS13305 PF01084 Ribosomal protein S18 AMD09_RS13310 PF01250 Ribosomal protein S6 AMD09_RS13315 PF01521 Iron-sulphur cluster biosynthesis AMD09_RS13320 PF01336 OB-fold nucleic acid binding domain AMD09_RS13320 PF00152 tRNA synthetases class II (D, K and N) AMD09_RS13340 PF04299 Putative FMN-binding domain AMD09_RS13355 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS13355 PF00072 Response regulator receiver domain AMD09_RS13400 PF00484 Carbonic anhydrase AMD09_RS13405 PF06052 3-hydroxyanthranilic acid dioxygenase AMD09_RS13415 PF00266 Aminotransferase class-V AMD09_RS13420 PF01494 FAD binding domain AMD09_RS13425 PF00929 Exonuclease AMD09_RS13425 PF08411 Exonuclease C-terminal AMD09_RS13450 PF01513 ATP-NAD kinase AMD09_RS13455 PF01170 Putative RNA methylase family UPF0020 AMD09_RS13455 PF02926 THUMP domain AMD09_RS13455 PF10672 S-adenosylmethionine-dependent methyltransferase AMD09_RS13460 PF00005 ABC transporter AMD09_RS13460 PF16326 ABC transporter C-terminal domain AMD09_RS13460 PF12848 ABC transporter AMD09_RS13490 PF00581 Rhodanese-like domain AMD09_RS13495 PF00293 NUDIX domain AMD09_RS13500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD09_RS13500 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD09_RS13505 PF00378 Enoyl-CoA hydratase/isomerase AMD09_RS13515 PF10576 Iron-sulfur binding domain of endonuclease III AMD09_RS13515 PF00633 Helix-hairpin-helix motif AMD09_RS13515 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD09_RS13520 PF01740 STAS domain AMD09_RS13520 PF00916 Sulfate permease family AMD09_RS13525 PF00484 Carbonic anhydrase AMD09_RS13540 PF12849 PBP superfamily domain AMD09_RS13545 PF12849 PBP superfamily domain AMD09_RS13550 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS13555 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS13560 PF00005 ABC transporter AMD09_RS13565 PF01895 PhoU domain AMD09_RS13575 PF00929 Exonuclease AMD09_RS13580 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS13585 PF00588 SpoU rRNA Methylase family AMD09_RS13585 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMD09_RS13595 PF08461 Ribonuclease R winged-helix domain AMD09_RS13595 PF17876 Cold shock domain AMD09_RS13595 PF00773 RNB domain AMD09_RS13595 PF08206 Ribonuclease B OB domain AMD09_RS13595 PF00575 S1 RNA binding domain AMD09_RS13610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD09_RS13610 PF02770 Acyl-CoA dehydrogenase, middle domain AMD09_RS13610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD09_RS13615 PF01209 ubiE/COQ5 methyltransferase family AMD09_RS13620 PF00809 Pterin binding enzyme AMD09_RS13620 PF02574 Homocysteine S-methyltransferase AMD09_RS13625 PF02574 Homocysteine S-methyltransferase AMD09_RS13625 PF00809 Pterin binding enzyme AMD09_RS13625 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMD09_RS13625 PF02607 B12 binding domain AMD09_RS13625 PF02310 B12 binding domain AMD09_RS13635 PF00294 pfkB family carbohydrate kinase AMD09_RS13640 PF07690 Major Facilitator Superfamily AMD09_RS13645 PF00356 Bacterial regulatory proteins, lacI family AMD09_RS13660 PF04102 SlyX AMD09_RS13665 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD09_RS13665 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD09_RS13665 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD09_RS13670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD09_RS13670 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMD09_RS13675 PF00255 Glutathione peroxidase AMD09_RS13680 PF00392 Bacterial regulatory proteins, gntR family AMD09_RS13685 PF00005 ABC transporter AMD09_RS13710 PF10415 Fumarase C C-terminus AMD09_RS13710 PF00206 Lyase AMD09_RS13715 PF01595 Cyclin M transmembrane N-terminal domain AMD09_RS13715 PF03471 Transporter associated domain AMD09_RS13715 PF00571 CBS domain AMD09_RS13725 PF00206 Lyase AMD09_RS13725 PF08328 Adenylosuccinate lyase C-terminal AMD09_RS13735 PF08007 Cupin superfamily protein AMD09_RS13745 PF02779 Transketolase, pyrimidine binding domain AMD09_RS13745 PF00676 Dehydrogenase E1 component AMD09_RS13745 PF16870 2-oxoglutarate dehydrogenase C-terminal AMD09_RS13745 PF16078 2-oxoglutarate dehydrogenase N-terminus AMD09_RS13750 PF02817 e3 binding domain AMD09_RS13750 PF00364 Biotin-requiring enzyme AMD09_RS13750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD09_RS13755 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD09_RS13755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD09_RS13760 PF03641 Possible lysine decarboxylase AMD09_RS13765 PF01205 Uncharacterized protein family UPF0029 AMD09_RS13770 PF00664 ABC transporter transmembrane region AMD09_RS13770 PF00005 ABC transporter AMD09_RS13775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS13775 PF03466 LysR substrate binding domain AMD09_RS13780 PF00664 ABC transporter transmembrane region AMD09_RS13780 PF03412 Peptidase C39 family AMD09_RS13780 PF00005 ABC transporter AMD09_RS13805 PF08543 Phosphomethylpyrimidine kinase AMD09_RS13810 PF00684 DnaJ central domain AMD09_RS13810 PF01556 DnaJ C terminal domain AMD09_RS13810 PF00226 DnaJ domain AMD09_RS13815 PF00012 Hsp70 protein AMD09_RS13820 PF01025 GrpE AMD09_RS13825 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AMD09_RS13825 PF01628 HrcA protein C terminal domain AMD09_RS13830 PF02463 RecF/RecN/SMC N terminal domain AMD09_RS13835 PF01475 Ferric uptake regulator family AMD09_RS13840 PF04355 SmpA / OmlA family AMD09_RS13845 PF03658 RnfH family Ubiquitin AMD09_RS13850 PF03364 Polyketide cyclase / dehydrase and lipid transport AMD09_RS13855 PF01668 SmpB protein AMD09_RS13860 PF00082 Subtilase family AMD09_RS13895 PF01527 Transposase AMD09_RS13920 PF05598 Transposase domain (DUF772) AMD09_RS13965 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS13975 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS13980 PF02321 Outer membrane efflux protein AMD09_RS13985 PF00106 short chain dehydrogenase AMD09_RS13990 PF00873 AcrB/AcrD/AcrF family AMD09_RS13995 PF00529 HlyD membrane-fusion protein of T1SS AMD09_RS13995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD09_RS14010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS14010 PF03466 LysR substrate binding domain AMD09_RS14015 PF00691 OmpA family AMD09_RS14015 PF05736 OprF membrane domain AMD09_RS14020 PF03441 FAD binding domain of DNA photolyase AMD09_RS14020 PF00875 DNA photolyase AMD09_RS14025 PF03796 DnaB-like helicase C terminal domain AMD09_RS14025 PF00772 DnaB-like helicase N terminal domain AMD09_RS14030 PF03358 NADPH-dependent FMN reductase AMD09_RS14035 PF13537 Glutamine amidotransferase domain AMD09_RS14035 PF00733 Asparagine synthase AMD09_RS14045 PF00043 Glutathione S-transferase, C-terminal domain AMD09_RS14045 PF02798 Glutathione S-transferase, N-terminal domain AMD09_RS14055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD09_RS14055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD09_RS14055 PF02770 Acyl-CoA dehydrogenase, middle domain AMD09_RS14070 PF01026 TatD related DNase AMD09_RS14075 PF00899 ThiF family AMD09_RS14090 PF00313 'Cold-shock' DNA-binding domain AMD09_RS14100 PF02253 Phospholipase A1 AMD09_RS14105 PF00484 Carbonic anhydrase AMD09_RS14115 PF05681 Fumarate hydratase (Fumerase) AMD09_RS14115 PF05683 Fumarase C-terminus AMD09_RS14120 PF00005 ABC transporter AMD09_RS14125 PF00970 Oxidoreductase FAD-binding domain AMD09_RS14125 PF00175 Oxidoreductase NAD-binding domain AMD09_RS14130 PF00255 Glutathione peroxidase AMD09_RS14135 PF01432 Peptidase family M3 AMD09_RS14140 PF12802 MarR family AMD09_RS14165 PF00854 POT family AMD09_RS14175 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD09_RS14175 PF14310 Fibronectin type III-like domain AMD09_RS14175 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD09_RS14185 PF07690 Major Facilitator Superfamily AMD09_RS14190 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD09_RS14190 PF00529 HlyD membrane-fusion protein of T1SS AMD09_RS14195 PF02321 Outer membrane efflux protein AMD09_RS14210 PF03989 DNA gyrase C-terminal domain, beta-propeller AMD09_RS14210 PF00521 DNA gyrase/topoisomerase IV, subunit A AMD09_RS14220 PF05724 Thiopurine S-methyltransferase (TPMT) AMD09_RS14225 PF00210 Ferritin-like domain AMD09_RS14230 PF01804 Penicillin amidase AMD09_RS14235 PF00593 TonB dependent receptor AMD09_RS14235 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS14245 PF13537 Glutamine amidotransferase domain AMD09_RS14245 PF00733 Asparagine synthase AMD09_RS14250 PF01546 Peptidase family M20/M25/M40 AMD09_RS14250 PF07687 Peptidase dimerisation domain AMD09_RS14255 PF03960 ArsC family AMD09_RS14260 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMD09_RS14260 PF00132 Bacterial transferase hexapeptide (six repeats) AMD09_RS14260 PF14602 Hexapeptide repeat of succinyl-transferase AMD09_RS14265 PF08335 GlnD PII-uridylyltransferase AMD09_RS14265 PF01966 HD domain AMD09_RS14265 PF01909 Nucleotidyltransferase domain AMD09_RS14270 PF00557 Metallopeptidase family M24 AMD09_RS14305 PF00318 Ribosomal protein S2 AMD09_RS14310 PF00889 Elongation factor TS AMD09_RS14315 PF00072 Response regulator receiver domain AMD09_RS14315 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS14320 PF00696 Amino acid kinase family AMD09_RS14325 PF01765 Ribosome recycling factor AMD09_RS14330 PF01255 Putative undecaprenyl diphosphate synthase AMD09_RS14340 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMD09_RS14340 PF13288 DXP reductoisomerase C-terminal domain AMD09_RS14340 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMD09_RS14345 PF02163 Peptidase family M50 AMD09_RS14345 PF17820 PDZ domain AMD09_RS14350 PF01103 Surface antigen AMD09_RS14350 PF07244 Surface antigen variable number repeat AMD09_RS14360 PF00132 Bacterial transferase hexapeptide (six repeats) AMD09_RS14360 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMD09_RS14365 PF07977 FabA-like domain AMD09_RS14370 PF00132 Bacterial transferase hexapeptide (six repeats) AMD09_RS14370 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMD09_RS14375 PF02684 Lipid-A-disaccharide synthetase AMD09_RS14380 PF01351 Ribonuclease HII AMD09_RS14385 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMD09_RS14385 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMD09_RS14385 PF01336 OB-fold nucleic acid binding domain AMD09_RS14385 PF02811 PHP domain AMD09_RS14385 PF14579 Helix-hairpin-helix motif AMD09_RS14390 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMD09_RS14405 PF03653 Uncharacterised protein family (UPF0093) AMD09_RS14425 PF03551 Transcriptional regulator PadR-like family AMD09_RS14445 PF02592 Putative vitamin uptake transporter AMD09_RS14455 PF02574 Homocysteine S-methyltransferase AMD09_RS14460 PF00324 Amino acid permease AMD09_RS14465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD09_RS14470 PF13732 Domain of unknown function (DUF4162) AMD09_RS14470 PF00005 ABC transporter AMD09_RS14485 PF09334 tRNA synthetases class I (M) AMD09_RS14485 PF01588 Putative tRNA binding domain AMD09_RS14495 PF04060 Putative Fe-S cluster AMD09_RS14515 PF04542 Sigma-70 region 2 AMD09_RS14515 PF04545 Sigma-70, region 4 AMD09_RS14560 PF01042 Endoribonuclease L-PSP AMD09_RS14570 PF03706 Lysylphosphatidylglycerol synthase TM region AMD09_RS14570 PF09924 Uncharacterised conserved protein (DUF2156) AMD09_RS14605 PF07690 Major Facilitator Superfamily AMD09_RS14610 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD09_RS14615 PF03831 PhnA domain AMD09_RS14615 PF08274 PhnA Zinc-Ribbon AMD09_RS14625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMD09_RS14650 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMD09_RS14660 PF07043 Protein of unknown function (DUF1328) AMD09_RS14665 PF01863 Protein of unknown function DUF45 AMD09_RS14675 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD09_RS14675 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMD09_RS14680 PF12951 Passenger-associated-transport-repeat AMD09_RS14680 PF00082 Subtilase family AMD09_RS14680 PF03797 Autotransporter beta-domain AMD09_RS14685 PF00108 Thiolase, N-terminal domain AMD09_RS14685 PF02803 Thiolase, C-terminal domain AMD09_RS14700 PF00072 Response regulator receiver domain AMD09_RS14700 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS14715 PF04679 ATP dependent DNA ligase C terminal region AMD09_RS14715 PF04675 DNA ligase N terminus AMD09_RS14715 PF01068 ATP dependent DNA ligase domain AMD09_RS14725 PF04679 ATP dependent DNA ligase C terminal region AMD09_RS14725 PF01068 ATP dependent DNA ligase domain AMD09_RS14725 PF04675 DNA ligase N terminus AMD09_RS14730 PF00271 Helicase conserved C-terminal domain AMD09_RS14730 PF00270 DEAD/DEAH box helicase AMD09_RS14730 PF08494 DEAD/H associated AMD09_RS14740 PF01494 FAD binding domain AMD09_RS14745 PF00313 'Cold-shock' DNA-binding domain AMD09_RS14750 PF01048 Phosphorylase superfamily AMD09_RS14755 PF00156 Phosphoribosyl transferase domain AMD09_RS14760 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD09_RS14765 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AMD09_RS14770 PF01593 Flavin containing amine oxidoreductase AMD09_RS14775 PF01323 DSBA-like thioredoxin domain AMD09_RS14780 PF01928 CYTH domain AMD09_RS14785 PF05958 tRNA (Uracil-5-)-methyltransferase AMD09_RS14795 PF02565 Recombination protein O C terminal AMD09_RS14795 PF11967 Recombination protein O N terminal AMD09_RS14800 PF07650 KH domain AMD09_RS14800 PF01926 50S ribosome-binding GTPase AMD09_RS14805 PF14622 Ribonuclease-III-like AMD09_RS14805 PF00035 Double-stranded RNA binding motif AMD09_RS14815 PF10502 Signal peptidase, peptidase S26 AMD09_RS14820 PF00679 Elongation factor G C-terminus AMD09_RS14820 PF00009 Elongation factor Tu GTP binding domain AMD09_RS14820 PF03144 Elongation factor Tu domain 2 AMD09_RS14820 PF06421 GTP-binding protein LepA C-terminus AMD09_RS14825 PF13180 PDZ domain AMD09_RS14835 PF08281 Sigma-70, region 4 AMD09_RS14835 PF04542 Sigma-70 region 2 AMD09_RS14840 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD09_RS14840 PF00378 Enoyl-CoA hydratase/isomerase AMD09_RS14840 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD09_RS14845 PF01545 Cation efflux family AMD09_RS14850 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMD09_RS14850 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD09_RS14855 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMD09_RS14855 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMD09_RS14855 PF00378 Enoyl-CoA hydratase/isomerase AMD09_RS14860 PF00378 Enoyl-CoA hydratase/isomerase AMD09_RS14865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD09_RS14865 PF02770 Acyl-CoA dehydrogenase, middle domain AMD09_RS14865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD09_RS14870 PF00171 Aldehyde dehydrogenase family AMD09_RS14875 PF06114 IrrE N-terminal-like domain AMD09_RS14875 PF01381 Helix-turn-helix AMD09_RS14875 PF09856 Predicted transcriptional regulator (DUF2083) AMD09_RS14885 PF07745 Glycosyl hydrolase family 53 AMD09_RS14890 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMD09_RS14890 PF16355 Domain of unknown function (DUF4982) AMD09_RS14890 PF00703 Glycosyl hydrolases family 2 AMD09_RS14890 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD09_RS14890 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD09_RS14910 PF05593 RHS Repeat AMD09_RS14910 PF03527 RHS protein AMD09_RS14920 PF05192 MutS domain III AMD09_RS14920 PF05190 MutS family domain IV AMD09_RS14920 PF00488 MutS domain V AMD09_RS14920 PF05188 MutS domain II AMD09_RS14920 PF01624 MutS domain I AMD09_RS14930 PF00141 Peroxidase AMD09_RS14935 PF01479 S4 domain AMD09_RS14955 PF01554 MatE AMD09_RS14960 PF01245 Ribosomal protein L19 AMD09_RS14965 PF01746 tRNA (Guanine-1)-methyltransferase AMD09_RS14970 PF05239 PRC-barrel domain AMD09_RS14970 PF01782 RimM N-terminal domain AMD09_RS14975 PF00886 Ribosomal protein S16 AMD09_RS14980 PF01063 Amino-transferase class IV AMD09_RS14985 PF03060 Nitronate monooxygenase AMD09_RS14990 PF02881 SRP54-type protein, helical bundle domain AMD09_RS14990 PF02978 Signal peptide binding domain AMD09_RS14990 PF00448 SRP54-type protein, GTPase domain AMD09_RS14995 PF01578 Cytochrome C assembly protein AMD09_RS15000 PF01263 Aldose 1-epimerase AMD09_RS15010 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AMD09_RS15015 PF00722 Glycosyl hydrolases family 16 AMD09_RS15020 PF00072 Response regulator receiver domain AMD09_RS15025 PF00072 Response regulator receiver domain AMD09_RS15025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS15025 PF13426 PAS domain AMD09_RS15030 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS15030 PF00672 HAMP domain AMD09_RS15030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS15030 PF01627 Hpt domain AMD09_RS15030 PF00072 Response regulator receiver domain AMD09_RS15030 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD09_RS15035 PF03705 CheR methyltransferase, all-alpha domain AMD09_RS15035 PF01739 CheR methyltransferase, SAM binding domain AMD09_RS15040 PF01339 CheB methylesterase AMD09_RS15045 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD09_RS15045 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS15045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS15045 PF13492 GAF domain AMD09_RS15045 PF13493 Domain of unknown function (DUF4118) AMD09_RS15050 PF07237 Protein of unknown function (DUF1428) AMD09_RS15055 PF00085 Thioredoxin AMD09_RS15060 PF00593 TonB dependent receptor AMD09_RS15060 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS15065 PF04616 Glycosyl hydrolases family 43 AMD09_RS15065 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AMD09_RS15070 PF00072 Response regulator receiver domain AMD09_RS15070 PF13188 PAS domain AMD09_RS15070 PF08448 PAS fold AMD09_RS15070 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS15070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS15075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS15075 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS15075 PF01627 Hpt domain AMD09_RS15075 PF00072 Response regulator receiver domain AMD09_RS15075 PF00672 HAMP domain AMD09_RS15075 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD09_RS15085 PF13581 Histidine kinase-like ATPase domain AMD09_RS15090 PF01740 STAS domain AMD09_RS15095 PF01740 STAS domain AMD09_RS15095 PF08678 Rsbr N terminal AMD09_RS15105 PF00183 Hsp90 protein AMD09_RS15105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS15110 PF12833 Helix-turn-helix domain AMD09_RS15120 PF05656 Protein of unknown function (DUF805) AMD09_RS15125 PF18073 Rubredoxin metal binding domain AMD09_RS15135 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AMD09_RS15140 PF00510 Cytochrome c oxidase subunit III AMD09_RS15145 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD09_RS15150 PF06481 COX Aromatic Rich Motif AMD09_RS15150 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMD09_RS15160 PF02401 LytB protein AMD09_RS15165 PF01252 Signal peptidase (SPase) II AMD09_RS15170 PF06827 Zinc finger found in FPG and IleRS AMD09_RS15170 PF00133 tRNA synthetases class I (I, L, M and V) AMD09_RS15170 PF08264 Anticodon-binding domain of tRNA AMD09_RS15175 PF01687 Riboflavin kinase AMD09_RS15175 PF06574 FAD synthetase AMD09_RS15180 PF03023 Lipid II flippase MurJ AMD09_RS15185 PF01649 Ribosomal protein S20 AMD09_RS15190 PF01018 GTP1/OBG AMD09_RS15190 PF01926 50S ribosome-binding GTPase AMD09_RS15195 PF01016 Ribosomal L27 protein AMD09_RS15200 PF00829 Ribosomal prokaryotic L21 protein AMD09_RS15205 PF17760 UvrA interaction domain AMD09_RS15205 PF00005 ABC transporter AMD09_RS15205 PF17755 UvrA DNA-binding domain AMD09_RS15220 PF00378 Enoyl-CoA hydratase/isomerase AMD09_RS15245 PF04376 Arginine-tRNA-protein transferase, N terminus AMD09_RS15245 PF04377 Arginine-tRNA-protein transferase, C terminus AMD09_RS15255 PF02222 ATP-grasp domain AMD09_RS15280 PF00730 HhH-GPD superfamily base excision DNA repair protein AMD09_RS15295 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS15295 PF00072 Response regulator receiver domain AMD09_RS15300 PF07730 Histidine kinase AMD09_RS15315 PF05209 Septum formation inhibitor MinC, N-terminal domain AMD09_RS15315 PF03775 Septum formation inhibitor MinC, C-terminal domain AMD09_RS15320 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD09_RS15325 PF03776 Septum formation topological specificity factor MinE AMD09_RS15335 PF08521 Two-component sensor kinase N-terminal AMD09_RS15335 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS15335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS15340 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS15340 PF00072 Response regulator receiver domain AMD09_RS15355 PF08019 Phosphoethanolamine transferase EptA/EptB AMD09_RS15355 PF00884 Sulfatase AMD09_RS15370 PF07690 Major Facilitator Superfamily AMD09_RS15375 PF02347 Glycine cleavage system P-protein AMD09_RS15380 PF00135 Carboxylesterase family AMD09_RS15385 PF00248 Aldo/keto reductase family AMD09_RS15390 PF00199 Catalase AMD09_RS15390 PF18011 C-terminal domain found in long catalases AMD09_RS15390 PF06628 Catalase-related immune-responsive AMD09_RS15420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS15420 PF02895 Signal transducing histidine kinase, homodimeric domain AMD09_RS15420 PF01584 CheW-like domain AMD09_RS15420 PF09078 CheY binding AMD09_RS15420 PF01627 Hpt domain AMD09_RS15425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS15425 PF02203 Tar ligand binding domain homologue AMD09_RS15425 PF00672 HAMP domain AMD09_RS15430 PF01584 CheW-like domain AMD09_RS15435 PF13426 PAS domain AMD09_RS15435 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS15435 PF00563 EAL domain AMD09_RS15440 PF01739 CheR methyltransferase, SAM binding domain AMD09_RS15440 PF03705 CheR methyltransferase, all-alpha domain AMD09_RS15445 PF01339 CheB methylesterase AMD09_RS15445 PF00072 Response regulator receiver domain AMD09_RS15450 PF13091 PLD-like domain AMD09_RS15455 PF05649 Peptidase family M13 AMD09_RS15455 PF01431 Peptidase family M13 AMD09_RS15465 PF00300 Histidine phosphatase superfamily (branch 1) AMD09_RS15470 PF04493 Endonuclease V AMD09_RS15480 PF02678 Pirin AMD09_RS15480 PF05726 Pirin C-terminal cupin domain AMD09_RS15495 PF05726 Pirin C-terminal cupin domain AMD09_RS15495 PF02678 Pirin AMD09_RS15500 PF13722 5TM C-terminal transporter carbon starvation CstA AMD09_RS15500 PF02554 Carbon starvation protein CstA AMD09_RS15505 PF04328 Selenoprotein, putative AMD09_RS15550 PF02625 XdhC and CoxI family AMD09_RS15550 PF13478 XdhC Rossmann domain AMD09_RS15555 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD09_RS15555 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMD09_RS15560 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMD09_RS15560 PF00941 FAD binding domain in molybdopterin dehydrogenase AMD09_RS15565 PF01799 [2Fe-2S] binding domain AMD09_RS15565 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMD09_RS15565 PF00111 2Fe-2S iron-sulfur cluster binding domain AMD09_RS15570 PF00698 Acyl transferase domain AMD09_RS15570 PF08240 Alcohol dehydrogenase GroES-like domain AMD09_RS15570 PF14765 Polyketide synthase dehydratase AMD09_RS15570 PF00550 Phosphopantetheine attachment site AMD09_RS15570 PF08659 KR domain AMD09_RS15570 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD09_RS15570 PF08990 Erythronolide synthase docking AMD09_RS15570 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD09_RS15570 PF16197 Ketoacyl-synthetase C-terminal extension AMD09_RS15570 PF09277 Erythronolide synthase, docking AMD09_RS15575 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS15575 PF00563 EAL domain AMD09_RS15575 PF01590 GAF domain AMD09_RS15575 PF00360 Phytochrome region AMD09_RS15580 PF00436 Single-strand binding protein family AMD09_RS15585 PF00348 Polyprenyl synthetase AMD09_RS15595 PF08245 Mur ligase middle domain AMD09_RS15595 PF02875 Mur ligase family, glutamate ligase domain AMD09_RS15610 PF00696 Amino acid kinase family AMD09_RS15610 PF01842 ACT domain AMD09_RS15615 PF02567 Phenazine biosynthesis-like protein AMD09_RS15620 PF02567 Phenazine biosynthesis-like protein AMD09_RS15630 PF02566 OsmC-like protein AMD09_RS15635 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMD09_RS15635 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMD09_RS15640 PF03652 Holliday junction resolvase AMD09_RS15645 PF02622 Uncharacterized ACR, COG1678 AMD09_RS15655 PF00117 Glutamine amidotransferase class-I AMD09_RS15655 PF00958 GMP synthase C terminal domain AMD09_RS15655 PF03352 Methyladenine glycosylase AMD09_RS15655 PF13673 Acetyltransferase (GNAT) domain AMD09_RS15655 PF13302 Acetyltransferase (GNAT) domain AMD09_RS15665 PF03211 Pectate lyase AMD09_RS15670 PF00437 Type II/IV secretion system protein AMD09_RS15675 PF00437 Type II/IV secretion system protein AMD09_RS15680 PF01168 Alanine racemase, N-terminal domain AMD09_RS15685 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMD09_RS15685 PF03807 NADP oxidoreductase coenzyme F420-dependent AMD09_RS15695 PF01551 Peptidase family M23 AMD09_RS15715 PF01965 DJ-1/PfpI family AMD09_RS15725 PF02082 Transcriptional regulator AMD09_RS15730 PF01458 Uncharacterized protein family (UPF0051) AMD09_RS15735 PF00005 ABC transporter AMD09_RS15740 PF01458 Uncharacterized protein family (UPF0051) AMD09_RS15745 PF00266 Aminotransferase class-V AMD09_RS15755 PF00355 Rieske [2Fe-2S] domain AMD09_RS15760 PF00593 TonB dependent receptor AMD09_RS15760 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS15765 PF13640 2OG-Fe(II) oxygenase superfamily AMD09_RS15765 PF18331 PKHD-type hydroxylase C-terminal domain AMD09_RS15790 PF02424 ApbE family AMD09_RS15795 PF00175 Oxidoreductase NAD-binding domain AMD09_RS15795 PF00258 Flavodoxin AMD09_RS15795 PF00667 FAD binding domain AMD09_RS15815 PF01546 Peptidase family M20/M25/M40 AMD09_RS15815 PF07687 Peptidase dimerisation domain AMD09_RS15825 PF01636 Phosphotransferase enzyme family AMD09_RS15830 PF00483 Nucleotidyl transferase AMD09_RS15835 PF00308 Bacterial dnaA protein AMD09_RS15840 PF01594 AI-2E family transporter AMD09_RS15850 PF00586 AIR synthase related protein, N-terminal domain AMD09_RS15850 PF02769 AIR synthase related protein, C-terminal domain AMD09_RS15860 PF00551 Formyl transferase AMD09_RS15880 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMD09_RS15885 PF01722 BolA-like protein AMD09_RS15890 PF00571 CBS domain AMD09_RS15890 PF01380 SIS domain AMD09_RS15905 PF03968 OstA-like protein AMD09_RS15910 PF00005 ABC transporter AMD09_RS15915 PF04963 Sigma-54 factor, core binding domain AMD09_RS15915 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMD09_RS15915 PF04552 Sigma-54, DNA binding domain AMD09_RS15920 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMD09_RS15925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMD09_RS15930 PF02603 HPr Serine kinase N terminus AMD09_RS15930 PF07475 HPr Serine kinase C-terminal domain AMD09_RS15935 PF03668 P-loop ATPase protein family AMD09_RS15945 PF00381 PTS HPr component phosphorylation site AMD09_RS15950 PF05524 PEP-utilising enzyme, N-terminal AMD09_RS15950 PF00391 PEP-utilising enzyme, mobile domain AMD09_RS15950 PF02896 PEP-utilising enzyme, TIM barrel domain AMD09_RS15955 PF03448 MgtE intracellular N domain AMD09_RS15955 PF00571 CBS domain AMD09_RS15955 PF01769 Divalent cation transporter AMD09_RS15960 PF00756 Putative esterase AMD09_RS15965 PF02322 Cytochrome bd terminal oxidase subunit II AMD09_RS15970 PF01654 Cytochrome bd terminal oxidase subunit I AMD09_RS15980 PF00324 Amino acid permease AMD09_RS15985 PF00544 Pectate lyase AMD09_RS15995 PF00561 alpha/beta hydrolase fold AMD09_RS16005 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS16010 PF00324 Amino acid permease AMD09_RS16030 PF12706 Beta-lactamase superfamily domain AMD09_RS16035 PF04820 Tryptophan halogenase AMD09_RS16060 PF09278 MerR, DNA binding AMD09_RS16060 PF00376 MerR family regulatory protein AMD09_RS16065 PF07690 Major Facilitator Superfamily AMD09_RS16075 PF03738 Glutathionylspermidine synthase preATP-grasp AMD09_RS16100 PF04012 PspA/IM30 family AMD09_RS16110 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMD09_RS16110 PF01243 Pyridoxamine 5'-phosphate oxidase AMD09_RS16115 PF01202 Shikimate kinase AMD09_RS16120 PF01761 3-dehydroquinate synthase AMD09_RS16130 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMD09_RS16200 PF01590 GAF domain AMD09_RS16200 PF02954 Bacterial regulatory protein, Fis family AMD09_RS16200 PF00158 Sigma-54 interaction domain AMD09_RS16205 PF07690 Major Facilitator Superfamily AMD09_RS16210 PF01627 Hpt domain AMD09_RS16210 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD09_RS16210 PF00072 Response regulator receiver domain AMD09_RS16210 PF00672 HAMP domain AMD09_RS16210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS16210 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS16215 PF00672 HAMP domain AMD09_RS16215 PF17149 Periplasmic sensor domain found in signal transduction proteins AMD09_RS16215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS16215 PF01627 Hpt domain AMD09_RS16215 PF00072 Response regulator receiver domain AMD09_RS16215 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS16225 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS16225 PF01627 Hpt domain AMD09_RS16225 PF00072 Response regulator receiver domain AMD09_RS16225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS16230 PF04264 YceI-like domain AMD09_RS16250 PF03315 Serine dehydratase beta chain AMD09_RS16250 PF03313 Serine dehydratase alpha chain AMD09_RS16255 PF12697 Alpha/beta hydrolase family AMD09_RS16260 PF03447 Homoserine dehydrogenase, NAD binding domain AMD09_RS16260 PF00696 Amino acid kinase family AMD09_RS16260 PF00742 Homoserine dehydrogenase AMD09_RS16265 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD09_RS16270 PF00561 alpha/beta hydrolase fold AMD09_RS16275 PF01476 LysM domain AMD09_RS16275 PF08525 Opacity-associated protein A N-terminal motif AMD09_RS16275 PF01551 Peptidase family M23 AMD09_RS16280 PF00009 Elongation factor Tu GTP binding domain AMD09_RS16280 PF16658 Class II release factor RF3, C-terminal domain AMD09_RS16285 PF03006 Haemolysin-III related AMD09_RS16290 PF05170 AsmA family AMD09_RS16295 PF00478 IMP dehydrogenase / GMP reductase domain AMD09_RS16295 PF00571 CBS domain AMD09_RS16300 PF00535 Glycosyl transferase family 2 AMD09_RS16305 PF00912 Transglycosylase AMD09_RS16310 PF01430 Hsp33 protein AMD09_RS16320 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS16320 PF00593 TonB dependent receptor AMD09_RS16330 PF00440 Bacterial regulatory proteins, tetR family AMD09_RS16335 PF00561 alpha/beta hydrolase fold AMD09_RS16340 PF09317 Domain of unknown function (DUF1974) AMD09_RS16340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMD09_RS16340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD09_RS16365 PF01597 Glycine cleavage H-protein AMD09_RS16370 PF01571 Aminomethyltransferase folate-binding domain AMD09_RS16370 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMD09_RS16380 PF01145 SPFH domain / Band 7 family AMD09_RS16380 PF16200 C-terminal region of band_7 AMD09_RS16385 PF02694 Uncharacterised BCR, YnfA/UPF0060 family AMD09_RS16390 PF03819 MazG nucleotide pyrophosphohydrolase domain AMD09_RS16395 PF00459 Inositol monophosphatase family AMD09_RS16400 PF00293 NUDIX domain AMD09_RS16405 PF00202 Aminotransferase class-III AMD09_RS16410 PF04452 RNA methyltransferase AMD09_RS16415 PF02685 Glucokinase AMD09_RS16430 PF01476 LysM domain AMD09_RS16430 PF00704 Glycosyl hydrolases family 18 AMD09_RS16435 PF07691 PA14 domain AMD09_RS16435 PF00728 Glycosyl hydrolase family 20, catalytic domain AMD09_RS16435 PF02838 Glycosyl hydrolase family 20, domain 2 AMD09_RS16445 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD09_RS16445 PF14310 Fibronectin type III-like domain AMD09_RS16445 PF07691 PA14 domain AMD09_RS16445 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD09_RS16455 PF01301 Glycosyl hydrolases family 35 AMD09_RS16460 PF13520 Amino acid permease AMD09_RS16470 PF02056 Family 4 glycosyl hydrolase AMD09_RS16470 PF11975 Family 4 glycosyl hydrolase C-terminal domain AMD09_RS16480 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD09_RS16480 PF07971 Glycosyl hydrolase family 92 AMD09_RS16485 PF01301 Glycosyl hydrolases family 35 AMD09_RS16515 PF03932 CutC family AMD09_RS16520 PF01112 Asparaginase AMD09_RS16530 PF13302 Acetyltransferase (GNAT) domain AMD09_RS16545 PF02895 Signal transducing histidine kinase, homodimeric domain AMD09_RS16545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS16545 PF01627 Hpt domain AMD09_RS16545 PF00072 Response regulator receiver domain AMD09_RS16545 PF01584 CheW-like domain AMD09_RS16550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS16550 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AMD09_RS16555 PF01584 CheW-like domain AMD09_RS16560 PF00072 Response regulator receiver domain AMD09_RS16565 PF00072 Response regulator receiver domain AMD09_RS16570 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMD09_RS16570 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMD09_RS16580 PF03747 ADP-ribosylglycohydrolase AMD09_RS16585 PF00814 Glycoprotease family AMD09_RS16590 PF04851 Type III restriction enzyme, res subunit AMD09_RS16590 PF13307 Helicase C-terminal domain AMD09_RS16600 PF14814 Bifunctional transglycosylase second domain AMD09_RS16600 PF00912 Transglycosylase AMD09_RS16600 PF00905 Penicillin binding protein transpeptidase domain AMD09_RS16605 PF00535 Glycosyl transferase family 2 AMD09_RS16615 PF02824 TGS domain AMD09_RS16615 PF04607 Region found in RelA / SpoT proteins AMD09_RS16615 PF13291 ACT domain AMD09_RS16620 PF12706 Beta-lactamase superfamily domain AMD09_RS16625 PF03070 TENA/THI-4/PQQC family AMD09_RS16630 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMD09_RS16635 PF04055 Radical SAM superfamily AMD09_RS16635 PF13186 Iron-sulfur cluster-binding domain AMD09_RS16650 PF02685 Glucokinase AMD09_RS16660 PF00271 Helicase conserved C-terminal domain AMD09_RS16660 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMD09_RS16660 PF11898 Domain of unknown function (DUF3418) AMD09_RS16660 PF04408 Helicase associated domain (HA2) AMD09_RS16660 PF00270 DEAD/DEAH box helicase AMD09_RS16665 PF00210 Ferritin-like domain AMD09_RS16670 PF09382 RQC domain AMD09_RS16670 PF00270 DEAD/DEAH box helicase AMD09_RS16670 PF00271 Helicase conserved C-terminal domain AMD09_RS16670 PF00570 HRDC domain AMD09_RS16670 PF16124 RecQ zinc-binding AMD09_RS16705 PF02203 Tar ligand binding domain homologue AMD09_RS16705 PF00672 HAMP domain AMD09_RS16705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS16710 PF01810 LysE type translocator AMD09_RS16715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS16715 PF03466 LysR substrate binding domain AMD09_RS16725 PF07536 HWE histidine kinase AMD09_RS16725 PF13426 PAS domain AMD09_RS16725 PF13581 Histidine kinase-like ATPase domain AMD09_RS16730 PF06508 Queuosine biosynthesis protein QueC AMD09_RS16740 PF04055 Radical SAM superfamily AMD09_RS16750 PF00691 OmpA family AMD09_RS16755 PF04052 TolB amino-terminal domain AMD09_RS16755 PF07676 WD40-like Beta Propeller Repeat AMD09_RS16765 PF02472 Biopolymer transport protein ExbD/TolR AMD09_RS16770 PF01618 MotA/TolQ/ExbB proton channel family AMD09_RS16775 PF03061 Thioesterase superfamily AMD09_RS16780 PF17864 RuvB AAA lid domain AMD09_RS16780 PF05491 RuvB C-terminal winged helix domain AMD09_RS16780 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMD09_RS16790 PF02705 K+ potassium transporter AMD09_RS16795 PF01330 RuvA N terminal domain AMD09_RS16795 PF07499 RuvA, C-terminal domain AMD09_RS16800 PF02075 Crossover junction endodeoxyribonuclease RuvC AMD09_RS16805 PF01709 Transcriptional regulator AMD09_RS16820 PF02938 GAD domain AMD09_RS16820 PF00152 tRNA synthetases class II (D, K and N) AMD09_RS16820 PF01336 OB-fold nucleic acid binding domain AMD09_RS16835 PF07690 Major Facilitator Superfamily AMD09_RS16860 PF03466 LysR substrate binding domain AMD09_RS16860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS16870 PF00005 ABC transporter AMD09_RS16870 PF12848 ABC transporter AMD09_RS16875 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS16875 PF00593 TonB dependent receptor AMD09_RS16890 PF00593 TonB dependent receptor AMD09_RS16890 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS16895 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS16895 PF00593 TonB dependent receptor AMD09_RS16900 PF00067 Cytochrome P450 AMD09_RS16905 PF02254 TrkA-N domain AMD09_RS16905 PF00999 Sodium/hydrogen exchanger family AMD09_RS16930 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS16930 PF00593 TonB dependent receptor AMD09_RS16930 PF07660 Secretin and TonB N terminus short domain AMD09_RS16940 PF04183 IucA / IucC family AMD09_RS16940 PF06276 Ferric iron reductase FhuF-like transporter AMD09_RS16945 PF07690 Major Facilitator Superfamily AMD09_RS16950 PF06276 Ferric iron reductase FhuF-like transporter AMD09_RS16950 PF04183 IucA / IucC family AMD09_RS16955 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMD09_RS16955 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMD09_RS16970 PF02654 Cobalamin-5-phosphate synthase AMD09_RS16980 PF02277 Phosphoribosyltransferase AMD09_RS16985 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase AMD09_RS16990 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMD09_RS16990 PF07685 CobB/CobQ-like glutamine amidotransferase domain AMD09_RS16995 PF00155 Aminotransferase class I and II AMD09_RS17000 PF17113 Regulatory signalling modulator protein AmpE AMD09_RS17000 PF03186 CobD/Cbib protein AMD09_RS17005 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP AMD09_RS17005 PF12557 Cob(I)alamin adenosyltransferase N terminal AMD09_RS17020 PF00593 TonB dependent receptor AMD09_RS17020 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS17025 PF10431 C-terminal, D2-small domain, of ClpB protein AMD09_RS17025 PF02861 Clp amino terminal domain, pathogenicity island component AMD09_RS17025 PF17871 AAA lid domain AMD09_RS17025 PF07724 AAA domain (Cdc48 subfamily) AMD09_RS17025 PF00004 ATPase family associated with various cellular activities (AAA) AMD09_RS17030 PF00005 ABC transporter AMD09_RS17035 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS17040 PF09084 NMT1/THI5 like AMD09_RS17045 PF00248 Aldo/keto reductase family AMD09_RS17050 PF00296 Luciferase-like monooxygenase AMD09_RS17055 PF00593 TonB dependent receptor AMD09_RS17055 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS17060 PF01541 GIY-YIG catalytic domain AMD09_RS17095 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS17095 PF00593 TonB dependent receptor AMD09_RS17100 PF02358 Trehalose-phosphatase AMD09_RS17105 PF00723 Glycosyl hydrolases family 15 AMD09_RS17110 PF00982 Glycosyltransferase family 20 AMD09_RS17115 PF01011 PQQ enzyme repeat AMD09_RS17120 PF02203 Tar ligand binding domain homologue AMD09_RS17120 PF00672 HAMP domain AMD09_RS17120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS17125 PF04134 Protein of unknown function, DUF393 AMD09_RS17135 PF02578 Multi-copper polyphenol oxidoreductase laccase AMD09_RS17140 PF00849 RNA pseudouridylate synthase AMD09_RS17145 PF13525 Outer membrane lipoprotein AMD09_RS17155 PF02540 NAD synthase AMD09_RS17155 PF00795 Carbon-nitrogen hydrolase AMD09_RS17165 PF01527 Transposase AMD09_RS17175 PF13276 HTH-like domain AMD09_RS17175 PF13333 Integrase core domain AMD09_RS17175 PF00665 Integrase core domain AMD09_RS17185 PF13406 Transglycosylase SLT domain AMD09_RS17190 PF01526 Tn3 transposase DDE domain AMD09_RS17190 PF13700 Domain of unknown function (DUF4158) AMD09_RS17230 PF01695 IstB-like ATP binding protein AMD09_RS17250 PF01527 Transposase AMD09_RS17255 PF00665 Integrase core domain AMD09_RS17255 PF13276 HTH-like domain AMD09_RS17255 PF13333 Integrase core domain AMD09_RS17285 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD09_RS17295 PF00462 Glutaredoxin AMD09_RS17300 PF01435 Peptidase family M48 AMD09_RS17300 PF13181 Tetratricopeptide repeat AMD09_RS17305 PF00072 Response regulator receiver domain AMD09_RS17305 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS17310 PF00989 PAS fold AMD09_RS17310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS17310 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS17310 PF11808 Phosphate regulon sensor protein PhoR AMD09_RS17315 PF13089 Polyphosphate kinase N-terminal domain AMD09_RS17315 PF17941 Polyphosphate kinase C-terminal domain 1 AMD09_RS17315 PF13090 Polyphosphate kinase C-terminal domain 2 AMD09_RS17315 PF02503 Polyphosphate kinase middle domain AMD09_RS17320 PF02541 Ppx/GppA phosphatase family AMD09_RS17325 PF00534 Glycosyl transferases group 1 AMD09_RS17325 PF13439 Glycosyltransferase Family 4 AMD09_RS17330 PF01569 PAP2 superfamily AMD09_RS17335 PF00149 Calcineurin-like phosphoesterase AMD09_RS17360 PF00156 Phosphoribosyl transferase domain AMD09_RS17375 PF08245 Mur ligase middle domain AMD09_RS17375 PF02875 Mur ligase family, glutamate ligase domain AMD09_RS17380 PF00300 Histidine phosphatase superfamily (branch 1) AMD09_RS17385 PF10459 Peptidase S46 AMD09_RS17390 PF10459 Peptidase S46 AMD09_RS17395 PF05506 Domain of unknown function (DUF756) AMD09_RS17395 PF04185 Phosphoesterase family AMD09_RS17405 PF08240 Alcohol dehydrogenase GroES-like domain AMD09_RS17405 PF00107 Zinc-binding dehydrogenase AMD09_RS17415 PF00005 ABC transporter AMD09_RS17415 PF12857 TOBE-like domain AMD09_RS17415 PF17850 CysA C-terminal regulatory domain AMD09_RS17420 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS17425 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS17435 PF00155 Aminotransferase class I and II AMD09_RS17445 PF00849 RNA pseudouridylate synthase AMD09_RS17455 PF00691 OmpA family AMD09_RS17455 PF05736 OprF membrane domain AMD09_RS17465 PF00107 Zinc-binding dehydrogenase AMD09_RS17465 PF08240 Alcohol dehydrogenase GroES-like domain AMD09_RS17470 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD09_RS17470 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD09_RS17480 PF00043 Glutathione S-transferase, C-terminal domain AMD09_RS17480 PF02798 Glutathione S-transferase, N-terminal domain AMD09_RS17485 PF00056 lactate/malate dehydrogenase, NAD binding domain AMD09_RS17485 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMD09_RS17490 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMD09_RS17495 PF00679 Elongation factor G C-terminus AMD09_RS17495 PF00009 Elongation factor Tu GTP binding domain AMD09_RS17495 PF03144 Elongation factor Tu domain 2 AMD09_RS17505 PF01425 Amidase AMD09_RS17515 PF01474 Class-II DAHP synthetase family AMD09_RS17530 PF02600 Disulfide bond formation protein DsbB AMD09_RS17535 PF01196 Ribosomal protein L17 AMD09_RS17540 PF01000 RNA polymerase Rpb3/RpoA insert domain AMD09_RS17540 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMD09_RS17540 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMD09_RS17545 PF00163 Ribosomal protein S4/S9 N-terminal domain AMD09_RS17545 PF01479 S4 domain AMD09_RS17550 PF00411 Ribosomal protein S11 AMD09_RS17555 PF00416 Ribosomal protein S13/S18 AMD09_RS17560 PF00344 SecY translocase AMD09_RS17565 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMD09_RS17570 PF00327 Ribosomal protein L30p/L7e AMD09_RS17575 PF03719 Ribosomal protein S5, C-terminal domain AMD09_RS17575 PF00333 Ribosomal protein S5, N-terminal domain AMD09_RS17580 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMD09_RS17585 PF00347 Ribosomal protein L6 AMD09_RS17590 PF00410 Ribosomal protein S8 AMD09_RS17595 PF00253 Ribosomal protein S14p/S29e AMD09_RS17600 PF00673 ribosomal L5P family C-terminus AMD09_RS17600 PF00281 Ribosomal protein L5 AMD09_RS17605 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMD09_RS17605 PF00467 KOW motif AMD09_RS17610 PF00238 Ribosomal protein L14p/L23e AMD09_RS17615 PF00366 Ribosomal protein S17 AMD09_RS17620 PF00831 Ribosomal L29 protein AMD09_RS17625 PF00252 Ribosomal protein L16p/L10e AMD09_RS17630 PF07650 KH domain AMD09_RS17630 PF00189 Ribosomal protein S3, C-terminal domain AMD09_RS17635 PF00237 Ribosomal protein L22p/L17e AMD09_RS17640 PF00203 Ribosomal protein S19 AMD09_RS17645 PF00181 Ribosomal Proteins L2, RNA binding domain AMD09_RS17645 PF03947 Ribosomal Proteins L2, C-terminal domain AMD09_RS17650 PF00276 Ribosomal protein L23 AMD09_RS17655 PF00573 Ribosomal protein L4/L1 family AMD09_RS17660 PF00297 Ribosomal protein L3 AMD09_RS17665 PF00338 Ribosomal protein S10p/S20e AMD09_RS17670 PF03144 Elongation factor Tu domain 2 AMD09_RS17670 PF00009 Elongation factor Tu GTP binding domain AMD09_RS17670 PF03143 Elongation factor Tu C-terminal domain AMD09_RS17675 PF03764 Elongation factor G, domain IV AMD09_RS17675 PF00679 Elongation factor G C-terminus AMD09_RS17675 PF14492 Elongation Factor G, domain II AMD09_RS17675 PF00009 Elongation factor Tu GTP binding domain AMD09_RS17675 PF03144 Elongation factor Tu domain 2 AMD09_RS17680 PF00177 Ribosomal protein S7p/S5e AMD09_RS17685 PF00164 Ribosomal protein S12/S23 AMD09_RS17690 PF00623 RNA polymerase Rpb1, domain 2 AMD09_RS17690 PF04997 RNA polymerase Rpb1, domain 1 AMD09_RS17690 PF04998 RNA polymerase Rpb1, domain 5 AMD09_RS17690 PF05000 RNA polymerase Rpb1, domain 4 AMD09_RS17690 PF04983 RNA polymerase Rpb1, domain 3 AMD09_RS17695 PF10385 RNA polymerase beta subunit external 1 domain AMD09_RS17695 PF04561 RNA polymerase Rpb2, domain 2 AMD09_RS17695 PF04563 RNA polymerase beta subunit AMD09_RS17695 PF00562 RNA polymerase Rpb2, domain 6 AMD09_RS17695 PF04560 RNA polymerase Rpb2, domain 7 AMD09_RS17695 PF04565 RNA polymerase Rpb2, domain 3 AMD09_RS17700 PF16320 Ribosomal protein L7/L12 dimerisation domain AMD09_RS17700 PF00542 Ribosomal protein L7/L12 C-terminal domain AMD09_RS17705 PF00466 Ribosomal protein L10 AMD09_RS17710 PF00687 Ribosomal protein L1p/L10e family AMD09_RS17715 PF03946 Ribosomal protein L11, N-terminal domain AMD09_RS17715 PF00298 Ribosomal protein L11, RNA binding domain AMD09_RS17720 PF00467 KOW motif AMD09_RS17720 PF02357 Transcription termination factor nusG AMD09_RS17725 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMD09_RS17735 PF03143 Elongation factor Tu C-terminal domain AMD09_RS17735 PF00009 Elongation factor Tu GTP binding domain AMD09_RS17735 PF03144 Elongation factor Tu domain 2 AMD09_RS17755 PF06071 Protein of unknown function (DUF933) AMD09_RS17755 PF01926 50S ribosome-binding GTPase AMD09_RS17760 PF01195 Peptidyl-tRNA hydrolase AMD09_RS17765 PF14693 Ribosomal protein TL5, C-terminal domain AMD09_RS17765 PF01386 Ribosomal L25p family AMD09_RS17770 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMD09_RS17770 PF14572 Phosphoribosyl synthetase-associated domain AMD09_RS17780 PF00288 GHMP kinases N terminal domain AMD09_RS17780 PF08544 GHMP kinases C terminal AMD09_RS17785 PF03550 Outer membrane lipoprotein LolB AMD09_RS17795 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMD09_RS17795 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMD09_RS17795 PF01488 Shikimate / quinate 5-dehydrogenase AMD09_RS17800 PF00472 RF-1 domain AMD09_RS17800 PF03462 PCRF domain AMD09_RS17810 PF00994 Probable molybdopterin binding domain AMD09_RS17815 PF03976 Polyphosphate kinase 2 (PPK2) AMD09_RS17825 PF00708 Acylphosphatase AMD09_RS17830 PF08534 Redoxin AMD09_RS17835 PF03631 Virulence factor BrkB AMD09_RS17840 PF03358 NADPH-dependent FMN reductase AMD09_RS17860 PF04073 Aminoacyl-tRNA editing domain AMD09_RS17865 PF04151 Bacterial pre-peptidase C-terminal domain AMD09_RS17865 PF00082 Subtilase family AMD09_RS17870 PF00082 Subtilase family AMD09_RS17870 PF04151 Bacterial pre-peptidase C-terminal domain AMD09_RS17875 PF00082 Subtilase family AMD09_RS17875 PF04151 Bacterial pre-peptidase C-terminal domain AMD09_RS17880 PF01063 Amino-transferase class IV AMD09_RS17895 PF02233 NAD(P) transhydrogenase beta subunit AMD09_RS17900 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMD09_RS17920 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMD09_RS17920 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMD09_RS17920 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMD09_RS17950 PF00476 DNA polymerase family A AMD09_RS17950 PF01367 5'-3' exonuclease, C-terminal SAM fold AMD09_RS17950 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMD09_RS17950 PF01612 3'-5' exonuclease AMD09_RS17955 PF00293 NUDIX domain AMD09_RS17965 PF00561 alpha/beta hydrolase fold AMD09_RS17970 PF17827 PrmC N-terminal domain AMD09_RS17970 PF05175 Methyltransferase small domain AMD09_RS17975 PF00578 AhpC/TSA family AMD09_RS17975 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMD09_RS17980 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD09_RS17980 PF13192 Thioredoxin domain AMD09_RS17985 PF03466 LysR substrate binding domain AMD09_RS17985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS17990 PF01272 Transcription elongation factor, GreA/GreB, C-term AMD09_RS17990 PF14760 Rnk N-terminus AMD09_RS17995 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMD09_RS18005 PF01625 Peptide methionine sulfoxide reductase AMD09_RS18015 PF00072 Response regulator receiver domain AMD09_RS18015 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS18020 PF00072 Response regulator receiver domain AMD09_RS18020 PF00672 HAMP domain AMD09_RS18020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS18020 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS18020 PF01627 Hpt domain AMD09_RS18020 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMD09_RS18025 PF00072 Response regulator receiver domain AMD09_RS18025 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS18040 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMD09_RS18040 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMD09_RS18050 PF00892 EamA-like transporter family AMD09_RS18075 PF18125 RlmM ferredoxin-like domain AMD09_RS18075 PF01728 FtsJ-like methyltransferase AMD09_RS18080 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD09_RS18080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD09_RS18085 PF08450 SMP-30/Gluconolactonase/LRE-like region AMD09_RS18105 PF00378 Enoyl-CoA hydratase/isomerase AMD09_RS18110 PF00171 Aldehyde dehydrogenase family AMD09_RS18120 PF03466 LysR substrate binding domain AMD09_RS18120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS18125 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit AMD09_RS18125 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD09_RS18130 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD09_RS18135 PF00392 Bacterial regulatory proteins, gntR family AMD09_RS18135 PF07729 FCD domain AMD09_RS18155 PF01494 FAD binding domain AMD09_RS18160 PF01494 FAD binding domain AMD09_RS18170 PF01923 Cobalamin adenosyltransferase AMD09_RS18175 PF00850 Histone deacetylase domain AMD09_RS18185 PF04453 LPS transport system D AMD09_RS18185 PF03968 OstA-like protein AMD09_RS18190 PF09312 SurA N-terminal domain AMD09_RS18190 PF00639 PPIC-type PPIASE domain AMD09_RS18195 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMD09_RS18200 PF00398 Ribosomal RNA adenine dimethylase AMD09_RS18205 PF04379 ApaG domain AMD09_RS18210 PF00149 Calcineurin-like phosphoesterase AMD09_RS18215 PF00005 ABC transporter AMD09_RS18215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMD09_RS18220 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS18220 PF12911 N-terminal TM domain of oligopeptide transport permease C AMD09_RS18225 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS18230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMD09_RS18235 PF00296 Luciferase-like monooxygenase AMD09_RS18255 PF03358 NADPH-dependent FMN reductase AMD09_RS18260 PF00296 Luciferase-like monooxygenase AMD09_RS18270 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS18275 PF00005 ABC transporter AMD09_RS18280 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMD09_RS18280 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMD09_RS18285 PF00158 Sigma-54 interaction domain AMD09_RS18290 PF00186 Dihydrofolate reductase AMD09_RS18300 PF00303 Thymidylate synthase AMD09_RS18305 PF01790 Prolipoprotein diacylglyceryl transferase AMD09_RS18325 PF01219 Prokaryotic diacylglycerol kinase AMD09_RS18335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS18335 PF08521 Two-component sensor kinase N-terminal AMD09_RS18335 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS18340 PF00072 Response regulator receiver domain AMD09_RS18340 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS18345 PF13472 GDSL-like Lipase/Acylhydrolase family AMD09_RS18350 PF00005 ABC transporter AMD09_RS18360 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AMD09_RS18370 PF00005 ABC transporter AMD09_RS18375 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS18395 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS18395 PF00593 TonB dependent receptor AMD09_RS18405 PF00248 Aldo/keto reductase family AMD09_RS18410 PF07670 Nucleoside recognition AMD09_RS18410 PF01773 Na+ dependent nucleoside transporter N-terminus AMD09_RS18410 PF07662 Na+ dependent nucleoside transporter C-terminus AMD09_RS18415 PF00294 pfkB family carbohydrate kinase AMD09_RS18425 PF01207 Dihydrouridine synthase (Dus) AMD09_RS18430 PF13649 Methyltransferase domain AMD09_RS18440 PF02772 S-adenosylmethionine synthetase, central domain AMD09_RS18440 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMD09_RS18440 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMD09_RS18445 PF00328 Histidine phosphatase superfamily (branch 2) AMD09_RS18475 PF00311 Phosphoenolpyruvate carboxylase AMD09_RS18485 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD09_RS18485 PF05221 S-adenosyl-L-homocysteine hydrolase AMD09_RS18490 PF13649 Methyltransferase domain AMD09_RS18520 PF00128 Alpha amylase, catalytic domain AMD09_RS18525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD09_RS18535 PF00082 Subtilase family AMD09_RS18535 PF09286 Pro-kumamolisin, activation domain AMD09_RS18540 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD09_RS18540 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD09_RS18540 PF00698 Acyl transferase domain AMD09_RS18540 PF00107 Zinc-binding dehydrogenase AMD09_RS18540 PF08240 Alcohol dehydrogenase GroES-like domain AMD09_RS18540 PF08659 KR domain AMD09_RS18540 PF14765 Polyketide synthase dehydratase AMD09_RS18540 PF16197 Ketoacyl-synthetase C-terminal extension AMD09_RS18540 PF00550 Phosphopantetheine attachment site AMD09_RS18560 PF00293 NUDIX domain AMD09_RS18565 PF01043 SecA preprotein cross-linking domain AMD09_RS18565 PF07516 SecA Wing and Scaffold domain AMD09_RS18565 PF07517 SecA DEAD-like domain AMD09_RS18565 PF02810 SEC-C motif AMD09_RS18570 PF08525 Opacity-associated protein A N-terminal motif AMD09_RS18570 PF01551 Peptidase family M23 AMD09_RS18570 PF01476 LysM domain AMD09_RS18580 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMD09_RS18585 PF00091 Tubulin/FtsZ family, GTPase domain AMD09_RS18585 PF12327 FtsZ family, C-terminal domain AMD09_RS18590 PF02491 SHS2 domain inserted in FTSA AMD09_RS18595 PF08478 POTRA domain, FtsQ-type AMD09_RS18595 PF03799 Cell division protein FtsQ AMD09_RS18600 PF01820 D-ala D-ala ligase N-terminus AMD09_RS18600 PF07478 D-ala D-ala ligase C-terminus AMD09_RS18605 PF08245 Mur ligase middle domain AMD09_RS18605 PF02875 Mur ligase family, glutamate ligase domain AMD09_RS18605 PF01225 Mur ligase family, catalytic domain AMD09_RS18610 PF03033 Glycosyltransferase family 28 N-terminal domain AMD09_RS18610 PF04101 Glycosyltransferase family 28 C-terminal domain AMD09_RS18615 PF04101 Glycosyltransferase family 28 C-terminal domain AMD09_RS18615 PF03033 Glycosyltransferase family 28 N-terminal domain AMD09_RS18620 PF01098 Cell cycle protein AMD09_RS18625 PF00953 Glycosyl transferase family 4 AMD09_RS18630 PF08245 Mur ligase middle domain AMD09_RS18630 PF01225 Mur ligase family, catalytic domain AMD09_RS18630 PF02875 Mur ligase family, glutamate ligase domain AMD09_RS18635 PF08245 Mur ligase middle domain AMD09_RS18635 PF01225 Mur ligase family, catalytic domain AMD09_RS18635 PF02875 Mur ligase family, glutamate ligase domain AMD09_RS18640 PF03717 Penicillin-binding Protein dimerisation domain AMD09_RS18640 PF00905 Penicillin binding protein transpeptidase domain AMD09_RS18645 PF04999 Cell division protein FtsL AMD09_RS18650 PF01795 MraW methylase family AMD09_RS18655 PF02381 MraZ protein, putative antitoxin-like AMD09_RS18670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD09_RS18680 PF02021 Uncharacterised protein family UPF0102 AMD09_RS18685 PF04307 LexA-binding, inner membrane-associated putative hydrolase AMD09_RS18690 PF01565 FAD binding domain AMD09_RS18690 PF02913 FAD linked oxidases, C-terminal domain AMD09_RS18705 PF00072 Response regulator receiver domain AMD09_RS18705 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS18710 PF02702 Osmosensitive K+ channel His kinase sensor domain AMD09_RS18710 PF13493 Domain of unknown function (DUF4118) AMD09_RS18710 PF13492 GAF domain AMD09_RS18710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS18710 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS18715 PF02669 K+-transporting ATPase, c chain AMD09_RS18725 PF03814 Potassium-transporting ATPase A subunit AMD09_RS18745 PF02769 AIR synthase related protein, C-terminal domain AMD09_RS18745 PF00586 AIR synthase related protein, N-terminal domain AMD09_RS18750 PF01029 NusB family AMD09_RS18755 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMD09_RS18760 PF00925 GTP cyclohydrolase II AMD09_RS18760 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMD09_RS18765 PF00677 Lumazine binding domain AMD09_RS18775 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMD09_RS18775 PF01872 RibD C-terminal domain AMD09_RS18785 PF03477 ATP cone domain AMD09_RS18790 PF00464 Serine hydroxymethyltransferase AMD09_RS18800 PF00005 ABC transporter AMD09_RS18800 PF12848 ABC transporter AMD09_RS18810 PF00892 EamA-like transporter family AMD09_RS18815 PF02567 Phenazine biosynthesis-like protein AMD09_RS18820 PF00392 Bacterial regulatory proteins, gntR family AMD09_RS18820 PF00155 Aminotransferase class I and II AMD09_RS18830 PF00756 Putative esterase AMD09_RS18835 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMD09_RS18840 PF00107 Zinc-binding dehydrogenase AMD09_RS18840 PF08240 Alcohol dehydrogenase GroES-like domain AMD09_RS18845 PF02583 Metal-sensitive transcriptional repressor AMD09_RS18860 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS18860 PF00072 Response regulator receiver domain AMD09_RS18865 PF00672 HAMP domain AMD09_RS18865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS18865 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS18870 PF04107 Glutamate-cysteine ligase family 2(GCS2) AMD09_RS18880 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMD09_RS18880 PF10996 Beta-Casp domain AMD09_RS18880 PF00753 Metallo-beta-lactamase superfamily AMD09_RS18885 PF01926 50S ribosome-binding GTPase AMD09_RS18890 PF00034 Cytochrome c AMD09_RS18900 PF01323 DSBA-like thioredoxin domain AMD09_RS18910 PF02028 BCCT, betaine/carnitine/choline family transporter AMD09_RS18915 PF00171 Aldehyde dehydrogenase family AMD09_RS18920 PF05199 GMC oxidoreductase AMD09_RS18920 PF00732 GMC oxidoreductase AMD09_RS18925 PF01743 Poly A polymerase head domain AMD09_RS18925 PF12627 Probable RNA and SrmB- binding site of polymerase A AMD09_RS18925 PF01966 HD domain AMD09_RS18935 PF01979 Amidohydrolase family AMD09_RS18940 PF01380 SIS domain AMD09_RS18945 PF00356 Bacterial regulatory proteins, lacI family AMD09_RS18950 PF07690 Major Facilitator Superfamily AMD09_RS18955 PF00392 Bacterial regulatory proteins, gntR family AMD09_RS18955 PF07702 UTRA domain AMD09_RS18970 PF00703 Glycosyl hydrolases family 2 AMD09_RS18970 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMD09_RS18970 PF16355 Domain of unknown function (DUF4982) AMD09_RS18970 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMD09_RS18970 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 AMD09_RS18995 PF03934 Type II secretion system (T2SS), protein K AMD09_RS19000 PF11612 Type II secretion system (T2SS), protein J AMD09_RS19000 PF07963 Prokaryotic N-terminal methylation motif AMD09_RS19005 PF07963 Prokaryotic N-terminal methylation motif AMD09_RS19005 PF02501 Type II secretion system (T2SS), protein I AMD09_RS19010 PF07963 Prokaryotic N-terminal methylation motif AMD09_RS19010 PF12019 Type II transport protein GspH AMD09_RS19015 PF07963 Prokaryotic N-terminal methylation motif AMD09_RS19015 PF08334 Type II secretion system (T2SS), protein G AMD09_RS19020 PF00482 Type II secretion system (T2SS), protein F AMD09_RS19025 PF00437 Type II/IV secretion system protein AMD09_RS19030 PF00263 Bacterial type II and III secretion system protein AMD09_RS19030 PF03958 Bacterial type II/III secretion system short domain AMD09_RS19070 PF00106 short chain dehydrogenase AMD09_RS19075 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMD09_RS19080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS19080 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS19085 PF00072 Response regulator receiver domain AMD09_RS19090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS19090 PF01590 GAF domain AMD09_RS19090 PF00360 Phytochrome region AMD09_RS19090 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS19090 PF08446 PAS fold AMD09_RS19095 PF04972 BON domain AMD09_RS19100 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMD09_RS19100 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMD09_RS19105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMD09_RS19105 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AMD09_RS19140 PF00293 NUDIX domain AMD09_RS19140 PF01467 Cytidylyltransferase-like AMD09_RS19150 PF03466 LysR substrate binding domain AMD09_RS19150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS19160 PF00595 PDZ domain AMD09_RS19160 PF11818 C-terminal domain of tail specific protease (DUF3340) AMD09_RS19160 PF17804 Tail specific protease N-terminal domain AMD09_RS19160 PF03572 Peptidase family S41 AMD09_RS19165 PF04055 Radical SAM superfamily AMD09_RS19165 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMD09_RS19170 PF03099 Biotin/lipoate A/B protein ligase family AMD09_RS19175 PF04359 Protein of unknown function (DUF493) AMD09_RS19185 PF00768 D-alanyl-D-alanine carboxypeptidase AMD09_RS19185 PF07943 Penicillin-binding protein 5, C-terminal domain AMD09_RS19195 PF05036 Sporulation related domain AMD09_RS19195 PF03330 Lytic transglycolase AMD09_RS19200 PF13406 Transglycosylase SLT domain AMD09_RS19205 PF00295 Glycosyl hydrolases family 28 AMD09_RS19210 PF01098 Cell cycle protein AMD09_RS19215 PF00905 Penicillin binding protein transpeptidase domain AMD09_RS19215 PF03717 Penicillin-binding Protein dimerisation domain AMD09_RS19225 PF04085 rod shape-determining protein MreC AMD09_RS19235 PF00294 pfkB family carbohydrate kinase AMD09_RS19240 PF02954 Bacterial regulatory protein, Fis family AMD09_RS19240 PF00158 Sigma-54 interaction domain AMD09_RS19240 PF01590 GAF domain AMD09_RS19250 PF08240 Alcohol dehydrogenase GroES-like domain AMD09_RS19250 PF00107 Zinc-binding dehydrogenase AMD09_RS19265 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD09_RS19270 PF13360 PQQ-like domain AMD09_RS19290 PF01433 Peptidase family M1 domain AMD09_RS19290 PF11838 ERAP1-like C-terminal domain AMD09_RS19295 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS19295 PF00563 EAL domain AMD09_RS19295 PF03707 Bacterial signalling protein N terminal repeat AMD09_RS19300 PF01209 ubiE/COQ5 methyltransferase family AMD09_RS19310 PF13533 Biotin-lipoyl like AMD09_RS19315 PF13673 Acetyltransferase (GNAT) domain AMD09_RS19325 PF00004 ATPase family associated with various cellular activities (AAA) AMD09_RS19325 PF10431 C-terminal, D2-small domain, of ClpB protein AMD09_RS19325 PF07724 AAA domain (Cdc48 subfamily) AMD09_RS19330 PF00227 Proteasome subunit AMD09_RS19335 PF02899 Phage integrase, N-terminal SAM-like domain AMD09_RS19335 PF00589 Phage integrase family AMD09_RS19345 PF01678 Diaminopimelate epimerase AMD09_RS19355 PF04304 Protein of unknown function (DUF454) AMD09_RS19360 PF00326 Prolyl oligopeptidase family AMD09_RS19360 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD09_RS19365 PF00155 Aminotransferase class I and II AMD09_RS19375 PF00326 Prolyl oligopeptidase family AMD09_RS19375 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMD09_RS19400 PF03900 Porphobilinogen deaminase, C-terminal domain AMD09_RS19400 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMD09_RS19405 PF04397 LytTr DNA-binding domain AMD09_RS19405 PF00072 Response regulator receiver domain AMD09_RS19410 PF06580 Histidine kinase AMD09_RS19410 PF07694 5TMR of 5TMR-LYT AMD09_RS19420 PF13632 Glycosyl transferase family group 2 AMD09_RS19435 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS19445 PF00553 Cellulose binding domain AMD09_RS19445 PF00150 Cellulase (glycosyl hydrolase family 5) AMD09_RS19450 PF00672 HAMP domain AMD09_RS19450 PF02203 Tar ligand binding domain homologue AMD09_RS19450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS19455 PF00563 EAL domain AMD09_RS19455 PF08448 PAS fold AMD09_RS19455 PF08447 PAS fold AMD09_RS19455 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS19480 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMD09_RS19480 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD09_RS19490 PF01204 Trehalase AMD09_RS19500 PF01544 CorA-like Mg2+ transporter protein AMD09_RS19510 PF00324 Amino acid permease AMD09_RS19520 PF01695 IstB-like ATP binding protein AMD09_RS19525 PF02796 Helix-turn-helix domain of resolvase AMD09_RS19525 PF00665 Integrase core domain AMD09_RS19530 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMD09_RS19535 PF00892 EamA-like transporter family AMD09_RS19570 PF07759 Protein of unknown function (DUF1615) AMD09_RS19575 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region AMD09_RS19575 PF00326 Prolyl oligopeptidase family AMD09_RS19580 PF03176 MMPL family AMD09_RS19580 PF12823 Domain of unknown function (DUF3817) AMD09_RS19605 PF13409 Glutathione S-transferase, N-terminal domain AMD09_RS19630 PF04002 RadC-like JAB domain AMD09_RS19655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS19655 PF00072 Response regulator receiver domain AMD09_RS19655 PF13426 PAS domain AMD09_RS19660 PF02796 Helix-turn-helix domain of resolvase AMD09_RS19660 PF00665 Integrase core domain AMD09_RS19665 PF01695 IstB-like ATP binding protein AMD09_RS19690 PF00873 AcrB/AcrD/AcrF family AMD09_RS19695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD09_RS19695 PF00529 HlyD membrane-fusion protein of T1SS AMD09_RS19700 PF00009 Elongation factor Tu GTP binding domain AMD09_RS19705 PF01507 Phosphoadenosine phosphosulfate reductase family AMD09_RS19710 PF00175 Oxidoreductase NAD-binding domain AMD09_RS19710 PF00258 Flavodoxin AMD09_RS19710 PF00667 FAD binding domain AMD09_RS19715 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMD09_RS19715 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMD09_RS19720 PF01507 Phosphoadenosine phosphosulfate reductase family AMD09_RS19740 PF01627 Hpt domain AMD09_RS19740 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS19740 PF00072 Response regulator receiver domain AMD09_RS19740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS19755 PF03466 LysR substrate binding domain AMD09_RS19755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS19760 PF10414 Sirohaem synthase dimerisation region AMD09_RS19760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMD09_RS19760 PF14824 Sirohaem biosynthesis protein central AMD09_RS19765 PF00291 Pyridoxal-phosphate dependent enzyme AMD09_RS19775 PF01661 Macro domain AMD09_RS19780 PF00274 Fructose-bisphosphate aldolase class-I AMD09_RS19785 PF00224 Pyruvate kinase, barrel domain AMD09_RS19785 PF02887 Pyruvate kinase, alpha/beta domain AMD09_RS19790 PF13419 Haloacid dehalogenase-like hydrolase AMD09_RS19795 PF00162 Phosphoglycerate kinase AMD09_RS19815 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD09_RS19815 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMD09_RS19825 PF03922 OmpW family AMD09_RS19830 PF03922 OmpW family AMD09_RS19840 PF04273 Putative phosphatase (DUF442) AMD09_RS19840 PF00753 Metallo-beta-lactamase superfamily AMD09_RS19850 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS19855 PF03459 TOBE domain AMD09_RS19855 PF00005 ABC transporter AMD09_RS19890 PF01476 LysM domain AMD09_RS19890 PF03734 L,D-transpeptidase catalytic domain AMD09_RS19895 PF04225 Opacity-associated protein A LysM-like domain AMD09_RS19895 PF01551 Peptidase family M23 AMD09_RS19905 PF00593 TonB dependent receptor AMD09_RS19905 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS19925 PF02780 Transketolase, C-terminal domain AMD09_RS19925 PF00456 Transketolase, thiamine diphosphate binding domain AMD09_RS19925 PF02779 Transketolase, pyrimidine binding domain AMD09_RS19930 PF00375 Sodium:dicarboxylate symporter family AMD09_RS19940 PF00092 von Willebrand factor type A domain AMD09_RS19940 PF07584 Aerotolerance regulator N-terminal AMD09_RS19960 PF07726 ATPase family associated with various cellular activities (AAA) AMD09_RS19960 PF17863 AAA lid domain AMD09_RS19965 PF00263 Bacterial type II and III secretion system protein AMD09_RS19965 PF07660 Secretin and TonB N terminus short domain AMD09_RS19965 PF03958 Bacterial type II/III secretion system short domain AMD09_RS19965 PF11741 AMIN domain AMD09_RS19970 PF04351 Pilus assembly protein, PilP AMD09_RS19975 PF04350 Pilus assembly protein, PilO AMD09_RS19980 PF05137 Fimbrial assembly protein (PilN) AMD09_RS19985 PF11104 Type IV pilus assembly protein PilM; AMD09_RS19990 PF00905 Penicillin binding protein transpeptidase domain AMD09_RS19990 PF00912 Transglycosylase AMD09_RS19990 PF17092 Penicillin-binding protein OB-like domain AMD09_RS20000 PF00285 Citrate synthase, C-terminal domain AMD09_RS20005 PF01197 Ribosomal protein L31 AMD09_RS20010 PF01156 Inosine-uridine preferring nucleoside hydrolase AMD09_RS20015 PF17191 RecG wedge domain AMD09_RS20015 PF00271 Helicase conserved C-terminal domain AMD09_RS20015 PF00270 DEAD/DEAH box helicase AMD09_RS20020 PF01042 Endoribonuclease L-PSP AMD09_RS20025 PF13291 ACT domain AMD09_RS20025 PF02824 TGS domain AMD09_RS20025 PF04607 Region found in RelA / SpoT proteins AMD09_RS20030 PF01192 RNA polymerase Rpb6 AMD09_RS20035 PF00625 Guanylate kinase AMD09_RS20040 PF08340 Domain of unknown function (DUF1732) AMD09_RS20040 PF03755 YicC-like family, N-terminal region AMD09_RS20045 PF03725 3' exoribonuclease family, domain 2 AMD09_RS20045 PF01138 3' exoribonuclease family, domain 1 AMD09_RS20055 PF01725 Ham1 family AMD09_RS20060 PF06969 HemN C-terminal domain AMD09_RS20060 PF04055 Radical SAM superfamily AMD09_RS20075 PF00557 Metallopeptidase family M24 AMD09_RS20085 PF05195 Aminopeptidase P, N-terminal domain AMD09_RS20085 PF00557 Metallopeptidase family M24 AMD09_RS20090 PF03695 Uncharacterised protein family (UPF0149) AMD09_RS20100 PF05164 Cell division protein ZapA AMD09_RS20105 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMD09_RS20115 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMD09_RS20125 PF13369 Transglutaminase-like superfamily AMD09_RS20130 PF00301 Rubredoxin AMD09_RS20135 PF02581 Thiamine monophosphate synthase AMD09_RS20150 PF00202 Aminotransferase class-III AMD09_RS20155 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS20155 PF17874 MalT-like TPR region AMD09_RS20160 PF00127 Copper binding proteins, plastocyanin/azurin family AMD09_RS20165 PF00155 Aminotransferase class I and II AMD09_RS20175 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMD09_RS20175 PF00034 Cytochrome c AMD09_RS20180 PF01593 Flavin containing amine oxidoreductase AMD09_RS20195 PF00202 Aminotransferase class-III AMD09_RS20200 PF00520 Ion transport protein AMD09_RS20200 PF00027 Cyclic nucleotide-binding domain AMD09_RS20215 PF01569 PAP2 superfamily AMD09_RS20220 PF01062 Bestrophin, RFP-TM, chloride channel AMD09_RS20230 PF01225 Mur ligase family, catalytic domain AMD09_RS20230 PF02875 Mur ligase family, glutamate ligase domain AMD09_RS20230 PF08245 Mur ligase middle domain AMD09_RS20240 PF00365 Phosphofructokinase AMD09_RS20250 PF03030 Inorganic H+ pyrophosphatase AMD09_RS20260 PF00719 Inorganic pyrophosphatase AMD09_RS20270 PF00593 TonB dependent receptor AMD09_RS20270 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS20275 PF12833 Helix-turn-helix domain AMD09_RS20280 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS20280 PF18500 CadC C-terminal domain 1 AMD09_RS20285 PF13667 ThiC-associated domain AMD09_RS20285 PF01964 Radical SAM ThiC family AMD09_RS20290 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS20290 PF00593 TonB dependent receptor AMD09_RS20295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS20295 PF00672 HAMP domain AMD09_RS20305 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMD09_RS20305 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMD09_RS20310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMD09_RS20310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMD09_RS20310 PF00205 Thiamine pyrophosphate enzyme, central domain AMD09_RS20320 PF00291 Pyridoxal-phosphate dependent enzyme AMD09_RS20325 PF08502 LeuA allosteric (dimerisation) domain AMD09_RS20325 PF00682 HMGL-like AMD09_RS20330 PF00180 Isocitrate/isopropylmalate dehydrogenase AMD09_RS20335 PF00694 Aconitase C-terminal domain AMD09_RS20340 PF00330 Aconitase family (aconitate hydratase) AMD09_RS20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS20350 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS20365 PF02321 Outer membrane efflux protein AMD09_RS20370 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMD09_RS20375 PF03279 Bacterial lipid A biosynthesis acyltransferase AMD09_RS20400 PF00390 Malic enzyme, N-terminal domain AMD09_RS20400 PF03949 Malic enzyme, NAD binding domain AMD09_RS20400 PF01515 Phosphate acetyl/butaryl transferase AMD09_RS20405 PF00375 Sodium:dicarboxylate symporter family AMD09_RS20415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS20415 PF02743 Cache domain AMD09_RS20415 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS20420 PF07690 Major Facilitator Superfamily AMD09_RS20430 PF03466 LysR substrate binding domain AMD09_RS20430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS20435 PF00248 Aldo/keto reductase family AMD09_RS20450 PF00072 Response regulator receiver domain AMD09_RS20450 PF00196 Bacterial regulatory proteins, luxR family AMD09_RS20460 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS20460 PF08521 Two-component sensor kinase N-terminal AMD09_RS20460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS20465 PF00072 Response regulator receiver domain AMD09_RS20465 PF00486 Transcriptional regulatory protein, C terminal AMD09_RS20475 PF03600 Citrate transporter AMD09_RS20480 PF00106 short chain dehydrogenase AMD09_RS20485 PF00356 Bacterial regulatory proteins, lacI family AMD09_RS20500 PF00128 Alpha amylase, catalytic domain AMD09_RS20515 PF03193 RsgA GTPase AMD09_RS20520 PF00155 Aminotransferase class I and II AMD09_RS20535 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS20535 PF00593 TonB dependent receptor AMD09_RS20540 PF01522 Polysaccharide deacetylase AMD09_RS20545 PF00462 Glutaredoxin AMD09_RS20560 PF01527 Transposase AMD09_RS20580 PF02645 Uncharacterised protein, DegV family COG1307 AMD09_RS20585 PF01327 Polypeptide deformylase AMD09_RS20590 PF03960 ArsC family AMD09_RS20610 PF01270 Glycosyl hydrolases family 8 AMD09_RS20615 PF03170 Bacterial cellulose synthase subunit AMD09_RS20620 PF03552 Cellulose synthase AMD09_RS20620 PF07238 PilZ domain AMD09_RS20620 PF00535 Glycosyl transferase family 2 AMD09_RS20635 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMD09_RS20635 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMD09_RS20680 PF00593 TonB dependent receptor AMD09_RS20680 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS20690 PF07702 UTRA domain AMD09_RS20690 PF00392 Bacterial regulatory proteins, gntR family AMD09_RS20700 PF00263 Bacterial type II and III secretion system protein AMD09_RS20700 PF03958 Bacterial type II/III secretion system short domain AMD09_RS20710 PF10741 Type II secretion system (T2SS), protein M subtype b AMD09_RS20715 PF05137 Fimbrial assembly protein (PilN) AMD09_RS20720 PF03934 Type II secretion system (T2SS), protein K AMD09_RS20730 PF07963 Prokaryotic N-terminal methylation motif AMD09_RS20735 PF12019 Type II transport protein GspH AMD09_RS20740 PF08334 Type II secretion system (T2SS), protein G AMD09_RS20745 PF00482 Type II secretion system (T2SS), protein F AMD09_RS20750 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMD09_RS20750 PF00437 Type II/IV secretion system protein AMD09_RS20755 PF00082 Subtilase family AMD09_RS20755 PF04151 Bacterial pre-peptidase C-terminal domain AMD09_RS20760 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD09_RS20760 PF13018 Extended Signal Peptide of Type V secretion system AMD09_RS20760 PF05658 Head domain of trimeric autotransporter adhesin AMD09_RS20760 PF03895 YadA-like membrane anchor domain AMD09_RS20765 PF04151 Bacterial pre-peptidase C-terminal domain AMD09_RS20765 PF00082 Subtilase family AMD09_RS20770 PF13018 Extended Signal Peptide of Type V secretion system AMD09_RS20770 PF03895 YadA-like membrane anchor domain AMD09_RS20770 PF05658 Head domain of trimeric autotransporter adhesin AMD09_RS20770 PF05662 Coiled stalk of trimeric autotransporter adhesin AMD09_RS20780 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMD09_RS20780 PF02769 AIR synthase related protein, C-terminal domain AMD09_RS20780 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMD09_RS20785 PF10411 Disulfide bond isomerase protein N-terminus AMD09_RS20785 PF13098 Thioredoxin-like domain AMD09_RS20790 PF00589 Phage integrase family AMD09_RS20790 PF02899 Phage integrase, N-terminal SAM-like domain AMD09_RS20805 PF03739 Lipopolysaccharide export system permease LptF/LptG AMD09_RS20815 PF00883 Cytosol aminopeptidase family, catalytic domain AMD09_RS20815 PF02789 Cytosol aminopeptidase family, N-terminal domain AMD09_RS20830 PF00133 tRNA synthetases class I (I, L, M and V) AMD09_RS20830 PF08264 Anticodon-binding domain of tRNA AMD09_RS20830 PF10458 Valyl tRNA synthetase tRNA binding arm AMD09_RS20835 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS20835 PF00593 TonB dependent receptor AMD09_RS20840 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AMD09_RS20840 PF01464 Transglycosylase SLT domain AMD09_RS20845 PF00544 Pectate lyase AMD09_RS20860 PF01066 CDP-alcohol phosphatidyltransferase AMD09_RS20870 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMD09_RS20870 PF03129 Anticodon binding domain AMD09_RS20870 PF04073 Aminoacyl-tRNA editing domain AMD09_RS20875 PF00816 H-NS histone family AMD09_RS20885 PF02405 Permease MlaE AMD09_RS20890 PF00005 ABC transporter AMD09_RS20895 PF03886 ABC-type transport auxiliary lipoprotein component AMD09_RS20895 PF02470 MlaD protein AMD09_RS20915 PF05045 Rhamnan synthesis protein F AMD09_RS20915 PF14307 Glycosyltransferase WbsX AMD09_RS20920 PF01144 Coenzyme A transferase AMD09_RS20925 PF01144 Coenzyme A transferase AMD09_RS20930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMD09_RS20930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMD09_RS20930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMD09_RS20930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMD09_RS20935 PF01050 Mannose-6-phosphate isomerase AMD09_RS20935 PF00483 Nucleotidyl transferase AMD09_RS20940 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMD09_RS20940 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMD09_RS20940 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMD09_RS20945 PF04321 RmlD substrate binding domain AMD09_RS20950 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMD09_RS20955 PF00483 Nucleotidyl transferase AMD09_RS20960 PF16363 GDP-mannose 4,6 dehydratase AMD09_RS20965 PF01012 Electron transfer flavoprotein domain AMD09_RS20970 PF01012 Electron transfer flavoprotein domain AMD09_RS20970 PF00766 Electron transfer flavoprotein FAD-binding domain AMD09_RS20980 PF01040 UbiA prenyltransferase family AMD09_RS20985 PF04030 D-arabinono-1,4-lactone oxidase AMD09_RS20985 PF01565 FAD binding domain AMD09_RS20990 PF00106 short chain dehydrogenase AMD09_RS21000 PF01370 NAD dependent epimerase/dehydratase family AMD09_RS21005 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD09_RS21005 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMD09_RS21020 PF01209 ubiE/COQ5 methyltransferase family AMD09_RS21030 PF05045 Rhamnan synthesis protein F AMD09_RS21030 PF14307 Glycosyltransferase WbsX AMD09_RS21035 PF00535 Glycosyl transferase family 2 AMD09_RS21040 PF00132 Bacterial transferase hexapeptide (six repeats) AMD09_RS21045 PF00005 ABC transporter AMD09_RS21055 PF01053 Cys/Met metabolism PLP-dependent enzyme AMD09_RS21060 PF00291 Pyridoxal-phosphate dependent enzyme AMD09_RS21060 PF00571 CBS domain AMD09_RS21080 PF00437 Type II/IV secretion system protein AMD09_RS21085 PF14497 Glutathione S-transferase, C-terminal domain AMD09_RS21085 PF02798 Glutathione S-transferase, N-terminal domain AMD09_RS21095 PF00271 Helicase conserved C-terminal domain AMD09_RS21095 PF00270 DEAD/DEAH box helicase AMD09_RS21105 PF00593 TonB dependent receptor AMD09_RS21105 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS21110 PF01242 6-pyruvoyl tetrahydropterin synthase AMD09_RS21130 PF13185 GAF domain AMD09_RS21140 PF00756 Putative esterase AMD09_RS21145 PF00593 TonB dependent receptor AMD09_RS21145 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS21150 PF13419 Haloacid dehalogenase-like hydrolase AMD09_RS21155 PF00817 impB/mucB/samB family AMD09_RS21155 PF11799 impB/mucB/samB family C-terminal domain AMD09_RS21160 PF07977 FabA-like domain AMD09_RS21165 PF02801 Beta-ketoacyl synthase, C-terminal domain AMD09_RS21165 PF00109 Beta-ketoacyl synthase, N-terminal domain AMD09_RS21175 PF01432 Peptidase family M3 AMD09_RS21190 PF07732 Multicopper oxidase AMD09_RS21190 PF00394 Multicopper oxidase AMD09_RS21190 PF07731 Multicopper oxidase AMD09_RS21195 PF05275 Copper resistance protein B precursor (CopB) AMD09_RS21200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMD09_RS21225 PF01380 SIS domain AMD09_RS21230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD09_RS21235 PF00005 ABC transporter AMD09_RS21235 PF02687 FtsX-like permease family AMD09_RS21235 PF12704 MacB-like periplasmic core domain AMD09_RS21240 PF02687 FtsX-like permease family AMD09_RS21240 PF12704 MacB-like periplasmic core domain AMD09_RS21245 PF02687 FtsX-like permease family AMD09_RS21245 PF12704 MacB-like periplasmic core domain AMD09_RS21255 PF02954 Bacterial regulatory protein, Fis family AMD09_RS21255 PF00072 Response regulator receiver domain AMD09_RS21255 PF00158 Sigma-54 interaction domain AMD09_RS21260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS21260 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS21265 PF14602 Hexapeptide repeat of succinyl-transferase AMD09_RS21265 PF12804 MobA-like NTP transferase domain AMD09_RS21265 PF00132 Bacterial transferase hexapeptide (six repeats) AMD09_RS21280 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMD09_RS21280 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMD09_RS21285 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD09_RS21285 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD09_RS21290 PF00231 ATP synthase AMD09_RS21295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD09_RS21295 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMD09_RS21295 PF00306 ATP synthase alpha/beta chain, C terminal domain AMD09_RS21300 PF00213 ATP synthase delta (OSCP) subunit AMD09_RS21305 PF00430 ATP synthase B/B' CF(0) AMD09_RS21310 PF00137 ATP synthase subunit C AMD09_RS21315 PF00119 ATP synthase A chain AMD09_RS21335 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD09_RS21335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMD09_RS21345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMD09_RS21345 PF02817 e3 binding domain AMD09_RS21345 PF00364 Biotin-requiring enzyme AMD09_RS21385 PF03180 NLPA lipoprotein AMD09_RS21390 PF00528 Binding-protein-dependent transport system inner membrane component AMD09_RS21395 PF09383 NIL domain AMD09_RS21395 PF00005 ABC transporter AMD09_RS21400 PF00892 EamA-like transporter family AMD09_RS21405 PF04461 Protein of unknown function (DUF520) AMD09_RS21415 PF01627 Hpt domain AMD09_RS21415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS21415 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS21415 PF00072 Response regulator receiver domain AMD09_RS21415 PF00989 PAS fold AMD09_RS21415 PF18415 Histidine kinase receptor ArcB trans-membrane domain AMD09_RS21440 PF13419 Haloacid dehalogenase-like hydrolase AMD09_RS21445 PF01479 S4 domain AMD09_RS21445 PF00849 RNA pseudouridylate synthase AMD09_RS21450 PF05175 Methyltransferase small domain AMD09_RS21450 PF08468 Methyltransferase small domain N-terminal AMD09_RS21460 PF07995 Glucose / Sorbosone dehydrogenase AMD09_RS21470 PF00989 PAS fold AMD09_RS21470 PF00512 His Kinase A (phospho-acceptor) domain AMD09_RS21470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS21490 PF00842 Alanine racemase, C-terminal domain AMD09_RS21490 PF01168 Alanine racemase, N-terminal domain AMD09_RS21495 PF01266 FAD dependent oxidoreductase AMD09_RS21500 PF01037 Lrp/AsnC ligand binding domain AMD09_RS21510 PF01641 SelR domain AMD09_RS21520 PF01618 MotA/TolQ/ExbB proton channel family AMD09_RS21525 PF00691 OmpA family AMD09_RS21525 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMD09_RS21550 PF01061 ABC-2 type transporter AMD09_RS21555 PF00005 ABC transporter AMD09_RS21560 PF00999 Sodium/hydrogen exchanger family AMD09_RS21565 PF02469 Fasciclin domain AMD09_RS21570 PF03167 Uracil DNA glycosylase superfamily AMD09_RS21580 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMD09_RS21590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS21590 PF03466 LysR substrate binding domain AMD09_RS21595 PF03358 NADPH-dependent FMN reductase AMD09_RS21600 PF00248 Aldo/keto reductase family AMD09_RS21610 PF05649 Peptidase family M13 AMD09_RS21610 PF01431 Peptidase family M13 AMD09_RS21630 PF13520 Amino acid permease AMD09_RS21640 PF00072 Response regulator receiver domain AMD09_RS21640 PF04397 LytTr DNA-binding domain AMD09_RS21645 PF02743 Cache domain AMD09_RS21645 PF06580 Histidine kinase AMD09_RS21645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMD09_RS21645 PF00672 HAMP domain AMD09_RS21660 PF05974 Domain of unknown function (DUF892) AMD09_RS21665 PF05067 Manganese containing catalase AMD09_RS21685 PF01739 CheR methyltransferase, SAM binding domain AMD09_RS21685 PF08448 PAS fold AMD09_RS21685 PF01339 CheB methylesterase AMD09_RS21685 PF03705 CheR methyltransferase, all-alpha domain AMD09_RS21700 PF00158 Sigma-54 interaction domain AMD09_RS21700 PF00072 Response regulator receiver domain AMD09_RS21700 PF02954 Bacterial regulatory protein, Fis family AMD09_RS21710 PF01654 Cytochrome bd terminal oxidase subunit I AMD09_RS21715 PF02322 Cytochrome bd terminal oxidase subunit II AMD09_RS21735 PF16363 GDP-mannose 4,6 dehydratase AMD09_RS21745 PF03275 UDP-galactopyranose mutase AMD09_RS21755 PF00664 ABC transporter transmembrane region AMD09_RS21755 PF00005 ABC transporter AMD09_RS21770 PF00107 Zinc-binding dehydrogenase AMD09_RS21770 PF13823 Alcohol dehydrogenase GroES-associated AMD09_RS21770 PF08240 Alcohol dehydrogenase GroES-like domain AMD09_RS21815 PF00593 TonB dependent receptor AMD09_RS21815 PF07715 TonB-dependent Receptor Plug Domain AMD09_RS21830 PF00005 ABC transporter AMD09_RS21840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS21840 PF03466 LysR substrate binding domain AMD09_RS21845 PF01042 Endoribonuclease L-PSP AMD09_RS21860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMD09_RS21860 PF00672 HAMP domain AMD09_RS21860 PF02203 Tar ligand binding domain homologue AMD09_RS21880 PF02525 Flavodoxin-like fold AMD09_RS21920 PF00557 Metallopeptidase family M24 AMD09_RS21930 PF01695 IstB-like ATP binding protein AMD09_RS21935 PF02796 Helix-turn-helix domain of resolvase AMD09_RS21935 PF00665 Integrase core domain AMD09_RS21940 PF01527 Transposase AMD09_RS21945 PF00665 Integrase core domain AMD09_RS21945 PF13276 HTH-like domain AMD09_RS21945 PF13333 Integrase core domain AMD09_RS21955 PF00717 Peptidase S24-like AMD09_RS21960 PF11799 impB/mucB/samB family C-terminal domain AMD09_RS21960 PF00817 impB/mucB/samB family AMD09_RS21960 PF13438 Domain of unknown function (DUF4113) AMD09_RS21960 PF11798 IMS family HHH motif AMD09_RS21980 PF01555 DNA methylase AMD09_RS22035 PF00182 Chitinase class I AMD09_RS22145 PF01695 IstB-like ATP binding protein AMD09_RS22150 PF00665 Integrase core domain AMD09_RS22150 PF02796 Helix-turn-helix domain of resolvase AMD09_RS22215 PF04546 Sigma-70, non-essential region AMD09_RS22215 PF04545 Sigma-70, region 4 AMD09_RS22215 PF00140 Sigma-70 factor, region 1.2 AMD09_RS22215 PF04542 Sigma-70 region 2 AMD09_RS22215 PF03979 Sigma-70 factor, region 1.1 AMD09_RS22215 PF04539 Sigma-70 region 3 AMD09_RS22220 PF02580 D-Tyr-tRNA(Tyr) deacylase AMD09_RS22225 PF03279 Bacterial lipid A biosynthesis acyltransferase AMD09_RS22240 PF00925 GTP cyclohydrolase II AMD09_RS22260 PF00535 Glycosyl transferase family 2 AMD09_RS22275 PF01189 16S rRNA methyltransferase RsmB/F AMD09_RS22275 PF01029 NusB family AMD09_RS22280 PF02911 Formyl transferase, C-terminal domain AMD09_RS22280 PF00551 Formyl transferase AMD09_RS22285 PF01327 Polypeptide deformylase AMD09_RS22290 PF01476 LysM domain AMD09_RS22295 PF17782 DprA winged helix domain AMD09_RS22295 PF02481 DNA recombination-mediator protein A AMD09_RS22300 PF04361 Protein of unknown function (DUF494) AMD09_RS22305 PF00114 Pilin (bacterial filament) AMD09_RS22305 PF07963 Prokaryotic N-terminal methylation motif AMD09_RS22315 PF01131 DNA topoisomerase AMD09_RS22315 PF13368 Topoisomerase C-terminal repeat AMD09_RS22315 PF01751 Toprim domain AMD09_RS22320 PF01300 Telomere recombination AMD09_RS22345 PF01343 Peptidase family S49 AMD09_RS22350 PF01554 MatE AMD09_RS22370 PF00270 DEAD/DEAH box helicase AMD09_RS22370 PF18074 Primosomal protein N C-terminal domain AMD09_RS22370 PF00271 Helicase conserved C-terminal domain AMD09_RS22370 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMD09_RS22370 PF17764 3′ DNA-binding domain (3′BD) AMD09_RS22375 PF13417 Glutathione S-transferase, N-terminal domain AMD09_RS22375 PF00043 Glutathione S-transferase, C-terminal domain AMD09_RS22390 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMD09_RS22395 PF03458 UPF0126 domain AMD09_RS22400 PF04545 Sigma-70, region 4 AMD09_RS22400 PF04542 Sigma-70 region 2 AMD09_RS22405 PF03167 Uracil DNA glycosylase superfamily AMD09_RS22410 PF01339 CheB methylesterase AMD09_RS22410 PF00072 Response regulator receiver domain AMD09_RS22415 PF18075 FtsX extracellular domain AMD09_RS22420 PF00005 ABC transporter AMD09_RS22425 PF00270 DEAD/DEAH box helicase AMD09_RS22425 PF12300 ATP-dependent RNA helicase RhlB AMD09_RS22425 PF00271 Helicase conserved C-terminal domain AMD09_RS22430 PF00085 Thioredoxin AMD09_RS22435 PF07498 Rho termination factor, N-terminal domain AMD09_RS22435 PF07497 Rho termination factor, RNA-binding domain AMD09_RS22435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMD09_RS22440 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AMD09_RS22445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS22445 PF03466 LysR substrate binding domain AMD09_RS22455 PF03971 Monomeric isocitrate dehydrogenase AMD09_RS22490 PF01867 CRISPR associated protein Cas1 AMD09_RS22500 PF02796 Helix-turn-helix domain of resolvase AMD09_RS22500 PF00665 Integrase core domain AMD09_RS22505 PF01695 IstB-like ATP binding protein AMD09_RS22515 PF04972 BON domain AMD09_RS22515 PF01476 LysM domain AMD09_RS22520 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMD09_RS22520 PF14489 QueF-like protein AMD09_RS22525 PF07687 Peptidase dimerisation domain AMD09_RS22525 PF01546 Peptidase family M20/M25/M40 AMD09_RS22530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD09_RS22535 PF00873 AcrB/AcrD/AcrF family AMD09_RS22540 PF00873 AcrB/AcrD/AcrF family AMD09_RS22545 PF07063 Domain of unknown function (DUF1338) AMD09_RS22585 PF01427 D-ala-D-ala dipeptidase AMD09_RS22590 PF01510 N-acetylmuramoyl-L-alanine amidase AMD09_RS22600 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AMD09_RS22600 PF13378 Enolase C-terminal domain-like AMD09_RS22610 PF13520 Amino acid permease AMD09_RS22625 PF05360 yiaA/B two helix domain AMD09_RS22630 PF07995 Glucose / Sorbosone dehydrogenase AMD09_RS22635 PF00933 Glycosyl hydrolase family 3 N terminal domain AMD09_RS22635 PF01915 Glycosyl hydrolase family 3 C-terminal domain AMD09_RS22635 PF14310 Fibronectin type III-like domain AMD09_RS22640 PF02152 Dihydroneopterin aldolase AMD09_RS22645 PF00814 Glycoprotease family AMD09_RS22650 PF01165 Ribosomal protein S21 AMD09_RS22655 PF09424 Yqey-like protein AMD09_RS22660 PF03631 Virulence factor BrkB AMD09_RS22665 PF08275 DNA primase catalytic core, N-terminal domain AMD09_RS22665 PF08278 DNA primase DnaG DnaB-binding AMD09_RS22665 PF10410 DnaB-helicase binding domain of primase AMD09_RS22665 PF01807 CHC2 zinc finger AMD09_RS22670 PF13593 SBF-like CPA transporter family (DUF4137) AMD09_RS22680 PF01040 UbiA prenyltransferase family AMD09_RS22705 PF00510 Cytochrome c oxidase subunit III AMD09_RS22710 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMD09_RS22715 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMD09_RS22725 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMD09_RS22725 PF00171 Aldehyde dehydrogenase family AMD09_RS22725 PF14850 DNA-binding domain of Proline dehydrogenase AMD09_RS22725 PF01619 Proline dehydrogenase AMD09_RS22765 PF03594 Benzoate membrane transport protein AMD09_RS22770 PF01590 GAF domain AMD09_RS22770 PF13426 PAS domain AMD09_RS22770 PF00360 Phytochrome region AMD09_RS22770 PF08446 PAS fold AMD09_RS22775 PF01126 Heme oxygenase AMD09_RS22780 PF07690 Major Facilitator Superfamily AMD09_RS22785 PF01263 Aldose 1-epimerase AMD09_RS22795 PF02810 SEC-C motif AMD09_RS22800 PF01925 Sulfite exporter TauE/SafE AMD09_RS22820 PF01227 GTP cyclohydrolase I AMD09_RS22830 PF07869 Protein of unknown function (DUF1656) AMD09_RS22835 PF00529 HlyD membrane-fusion protein of T1SS AMD09_RS22835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMD09_RS22840 PF02321 Outer membrane efflux protein AMD09_RS22845 PF04632 Fusaric acid resistance protein family AMD09_RS22850 PF00083 Sugar (and other) transporter AMD09_RS22855 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family AMD09_RS22860 PF13396 Phospholipase_D-nuclease N-terminal AMD09_RS22860 PF13091 PLD-like domain AMD09_RS22885 PF01850 PIN domain AMD09_RS22910 PF00849 RNA pseudouridylate synthase AMD09_RS22920 PF01527 Transposase AMD09_RS22930 PF13333 Integrase core domain AMD09_RS22930 PF00665 Integrase core domain AMD09_RS22930 PF13276 HTH-like domain AMD09_RS22945 PF02785 Biotin carboxylase C-terminal domain AMD09_RS22945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMD09_RS22945 PF00289 Biotin carboxylase, N-terminal domain AMD09_RS22950 PF01425 Amidase AMD09_RS22980 PF13538 UvrD-like helicase C-terminal domain AMD09_RS22985 PF13361 UvrD-like helicase C-terminal domain AMD09_RS22985 PF00580 UvrD/REP helicase N-terminal domain AMD09_RS22985 PF12705 PD-(D/E)XK nuclease superfamily AMD09_RS22990 PF17946 RecC C-terminal domain AMD09_RS23005 PF00005 ABC transporter AMD09_RS23010 PF02405 Permease MlaE AMD09_RS23015 PF02470 MlaD protein AMD09_RS23020 PF05494 MlaC protein AMD09_RS23030 PF04333 MlaA lipoprotein AMD09_RS23040 PF00255 Glutathione peroxidase AMD09_RS23050 PF02646 RmuC family AMD09_RS23055 PF00107 Zinc-binding dehydrogenase AMD09_RS23055 PF08240 Alcohol dehydrogenase GroES-like domain AMD09_RS23060 PF03466 LysR substrate binding domain AMD09_RS23060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMD09_RS23070 PF00043 Glutathione S-transferase, C-terminal domain AMD09_RS23070 PF13417 Glutathione S-transferase, N-terminal domain AMD09_RS23080 PF13520 Amino acid permease AMD09_RS23085 PF07971 Glycosyl hydrolase family 92 AMD09_RS23085 PF17678 Glycosyl hydrolase family 92 N-terminal domain AMD09_RS23090 PF10947 Protein of unknown function (DUF2628) AMD09_RS23095 PF00990 Diguanylate cyclase, GGDEF domain AMD09_RS23100 PF05651 Putative sugar diacid recognition AMD09_RS23100 PF17853 GGDEF-like domain AMD09_RS23100 PF13556 PucR C-terminal helix-turn-helix domain AMD09_RS23105 PF02595 Glycerate kinase family AMD09_RS23110 PF07690 Major Facilitator Superfamily AMD09_RS23125 PF17785 PUA-like domain AMD09_RS23125 PF10672 S-adenosylmethionine-dependent methyltransferase AMD09_RS23130 PF03741 Integral membrane protein TerC family AMD09_RS23135 PF01694 Rhomboid family AMD09_RS23140 PF03009 Glycerophosphoryl diester phosphodiesterase family AMD09_RS23150 PF01569 PAP2 superfamily AMD09_RS23155 PF10396 GTP-binding protein TrmE N-terminus AMD09_RS23155 PF12631 MnmE helical domain AMD09_RS23155 PF01926 50S ribosome-binding GTPase AMD09_RS23160 PF01522 Polysaccharide deacetylase AMD09_RS23170 PF02096 60Kd inner membrane protein AMD09_RS23170 PF14849 YidC periplasmic domain AMD09_RS23175 PF00825 Ribonuclease P AMD09_RS23180 PF00468 Ribosomal protein L34