AMD09_RS00400 SM00382 ATPases associated with a variety of cellular activities AMD09_RS00400 SM00760 Bacterial dnaA protein helix-turn-helix domain AMD09_RS00405 SM00480 DNA polymerase III beta subunit AMD09_RS00415 SM00387 Histidine kinase-like ATPases AMD09_RS00415 SM00433 TopoisomeraseII AMD09_RS00430 SM00028 Tetratricopeptide repeats AMD09_RS00465 SM00155 Phospholipase D. Active site motifs. AMD09_RS00480 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD09_RS00510 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD09_RS00510 SM00245 tail specific protease AMD09_RS00590 SM00633 Glycosyl hydrolase family 10 AMD09_RS00605 SM00633 Glycosyl hydrolase family 10 AMD09_RS00620 SM00633 Glycosyl hydrolase family 10 AMD09_RS00645 SM01007 Class II Aldolase and Adducin N-terminal domain AMD09_RS00675 SM00612 AMD09_RS00675 AMD09_RS00695 SM00758 AMD09_RS00695 AMD09_RS00695 SM01217 AMD09_RS00695 AMD09_RS00705 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD09_RS00720 SM00354 helix_turn _helix lactose operon repressor AMD09_RS00795 SM00382 ATPases associated with a variety of cellular activities AMD09_RS00805 SM00836 DALR anticodon binding domain AMD09_RS00855 SM00564 beta-propeller repeat AMD09_RS00885 SM00091 PAS domain AMD09_RS00885 SM00387 Histidine kinase-like ATPases AMD09_RS00885 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS00885 SM00448 cheY-homologous receiver domain AMD09_RS00895 SM00346 helix_turn_helix isocitrate lyase regulation AMD09_RS00915 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD09_RS00970 SM00421 helix_turn_helix, Lux Regulon AMD09_RS00970 SM00448 cheY-homologous receiver domain AMD09_RS01110 SM00155 Phospholipase D. Active site motifs. AMD09_RS01130 SM01266 AMD09_RS01130 AMD09_RS01140 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS01180 SM00382 ATPases associated with a variety of cellular activities AMD09_RS01180 SM01086 C-terminal, D2-small domain, of ClpB protein AMD09_RS01205 SM00915 Jacalin-like lectin domain AMD09_RS01215 SM00965 Secretin and TonB N terminus short domain AMD09_RS01235 SM00220 Serine/Threonine protein kinases, catalytic domain AMD09_RS01245 SM00028 Tetratricopeptide repeats AMD09_RS01260 SM00240 Forkhead associated domain AMD09_RS01285 SM00331 Sigma factor PP2C-like phosphatases AMD09_RS01285 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMD09_RS01305 SM00912 haemagglutination activity domain AMD09_RS01320 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD09_RS01320 SM00474 3'-5' exonuclease AMD09_RS01320 SM00475 5'-3' exonuclease AMD09_RS01320 SM00482 DNA polymerase A domain AMD09_RS01375 SM00563 Phosphate acyltransferases AMD09_RS01415 SM00822 AMD09_RS01415 AMD09_RS01440 SM00825 Beta-ketoacyl synthase AMD09_RS01450 SM00248 ankyrin repeats AMD09_RS01475 SM01057 Eukaryotic-type carbonic anhydrase AMD09_RS01480 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD09_RS01480 SM00924 MgtE intracellular N domain AMD09_RS01485 SM00881 CoA binding domain AMD09_RS01545 SM00382 ATPases associated with a variety of cellular activities AMD09_RS01555 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS01595 SM00530 Helix-turn-helix XRE-family like proteins AMD09_RS01605 SM00382 ATPases associated with a variety of cellular activities AMD09_RS01625 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD09_RS01675 SM01004 Delta-aminolevulinic acid dehydratase AMD09_RS01690 SM00477 DNA/RNA non-specific endonuclease AMD09_RS01690 SM00892 DNA/RNA non-specific endonuclease AMD09_RS01720 SM00491 AMD09_RS01720 AMD09_RS01725 SM01060 AMD09_RS01725 AMD09_RS01730 SM00248 ankyrin repeats AMD09_RS01750 SM00448 cheY-homologous receiver domain AMD09_RS01750 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS01755 SM00387 Histidine kinase-like ATPases AMD09_RS01755 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS01820 SM00960 Roadblock/LC7 domain AMD09_RS01850 SM00849 Metallo-beta-lactamase superfamily AMD09_RS01890 SM00382 ATPases associated with a variety of cellular activities AMD09_RS01905 SM00421 helix_turn_helix, Lux Regulon AMD09_RS01905 SM00448 cheY-homologous receiver domain AMD09_RS01920 SM01060 AMD09_RS01920 AMD09_RS01965 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD09_RS01985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS01985 SM00387 Histidine kinase-like ATPases AMD09_RS01985 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS01990 SM00448 cheY-homologous receiver domain AMD09_RS01990 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS02040 SM00244 prohibitin homologues AMD09_RS02070 SM00052 Putative diguanylate phosphodiesterase AMD09_RS02085 SM00382 ATPases associated with a variety of cellular activities AMD09_RS02095 SM00938 Nitrogen regulatory protein P-II AMD09_RS02140 SM00823 Phosphopantetheine attachment site AMD09_RS02140 SM00824 Thioesterase AMD09_RS02170 SM00836 DALR anticodon binding domain AMD09_RS02170 SM01016 Arginyl tRNA synthetase N terminal dom AMD09_RS02200 SM01259 AMD09_RS02200 AMD09_RS02220 SM00470 ParB-like nuclease domain AMD09_RS02265 SM00363 S4 RNA-binding domain AMD09_RS02295 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD09_RS02295 SM01232 AMD09_RS02295 AMD09_RS02310 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS02310 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS02345 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AMD09_RS02370 SM00354 helix_turn _helix lactose operon repressor AMD09_RS02380 SM00563 Phosphate acyltransferases AMD09_RS02385 SM00829 Enoylreductase AMD09_RS02405 SM00382 ATPases associated with a variety of cellular activities AMD09_RS02415 SM00829 Enoylreductase AMD09_RS02540 SM00382 ATPases associated with a variety of cellular activities AMD09_RS02650 SM00487 DEAD-like helicases superfamily AMD09_RS02650 SM00490 helicase superfamily c-terminal domain AMD09_RS02670 SM00822 AMD09_RS02670 AMD09_RS02930 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AMD09_RS02955 SM00421 helix_turn_helix, Lux Regulon AMD09_RS02955 SM00448 cheY-homologous receiver domain AMD09_RS02975 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS03055 SM00642 Alpha-amylase domain AMD09_RS03060 SM00642 Alpha-amylase domain AMD09_RS03065 SM00642 Alpha-amylase domain AMD09_RS03115 SM00354 helix_turn _helix lactose operon repressor AMD09_RS03155 SM00344 helix_turn_helix ASNC type AMD09_RS03175 SM00382 ATPases associated with a variety of cellular activities AMD09_RS03190 SM00382 ATPases associated with a variety of cellular activities AMD09_RS03225 SM00530 Helix-turn-helix XRE-family like proteins AMD09_RS03255 SM00855 Phosphoglycerate mutase family AMD09_RS03260 SM00867 YceI-like domain AMD09_RS03265 SM00155 Phospholipase D. Active site motifs. AMD09_RS03275 SM00563 Phosphate acyltransferases AMD09_RS03290 SM00028 Tetratricopeptide repeats AMD09_RS03315 SM01230 AMD09_RS03315 AMD09_RS03320 SM00938 Nitrogen regulatory protein P-II AMD09_RS03330 SM00387 Histidine kinase-like ATPases AMD09_RS03330 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS03335 SM00382 ATPases associated with a variety of cellular activities AMD09_RS03335 SM00448 cheY-homologous receiver domain AMD09_RS03395 SM00450 Rhodanese Homology Domain AMD09_RS03420 SM00387 Histidine kinase-like ATPases AMD09_RS03420 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS03425 SM00382 ATPases associated with a variety of cellular activities AMD09_RS03425 SM00448 cheY-homologous receiver domain AMD09_RS03535 SM00563 Phosphate acyltransferases AMD09_RS03570 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS03595 SM00100 Cyclic nucleotide-monophosphate binding domain AMD09_RS03595 SM00267 diguanylate cyclase AMD09_RS03620 SM00878 Biotin carboxylase C-terminal domain AMD09_RS03645 SM00953 AMD09_RS03645 AMD09_RS03685 SM00833 Cobalamin synthesis protein cobW C-terminal domain AMD09_RS03715 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD09_RS03750 SM00829 Enoylreductase AMD09_RS03780 SM00487 DEAD-like helicases superfamily AMD09_RS03780 SM00490 helicase superfamily c-terminal domain AMD09_RS03780 SM00847 Helicase associated domain (HA2) Add an annotation AMD09_RS03915 SM00422 helix_turn_helix, mercury resistance AMD09_RS03950 SM00448 cheY-homologous receiver domain AMD09_RS03950 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS03955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS03955 SM00387 Histidine kinase-like ATPases AMD09_RS03955 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS04100 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD09_RS04105 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD09_RS04125 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS04155 SM00420 helix_turn_helix, Deoxyribose operon repressor AMD09_RS04155 SM01134 AMD09_RS04155 AMD09_RS04170 SM00882 Coenzyme A transferase AMD09_RS04175 SM00882 Coenzyme A transferase AMD09_RS04195 SM00998 Adenylosuccinate lyase C-terminus AMD09_RS04215 SM00346 helix_turn_helix isocitrate lyase regulation AMD09_RS04220 SM00090 RIO-like kinase AMD09_RS04235 SM01228 AMD09_RS04235 AMD09_RS04290 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD09_RS04290 SM00876 Biotin and Thiamin Synthesis associated domain AMD09_RS04310 SM00369 Leucine-rich repeats, typical (most populated) subfamily AMD09_RS04405 SM00382 ATPases associated with a variety of cellular activities AMD09_RS04465 SM00267 diguanylate cyclase AMD09_RS04475 SM00642 Alpha-amylase domain AMD09_RS04480 SM00642 Alpha-amylase domain AMD09_RS04490 SM00642 Alpha-amylase domain AMD09_RS04500 SM00642 Alpha-amylase domain AMD09_RS04550 SM00822 AMD09_RS04550 AMD09_RS04560 SM00487 DEAD-like helicases superfamily AMD09_RS04560 SM00490 helicase superfamily c-terminal domain AMD09_RS04570 SM00326 Src homology 3 domains AMD09_RS04575 SM00861 Transketolase, pyrimidine binding domain AMD09_RS04585 SM00237 Domains in Na-Ca exchangers and integrin-beta4 AMD09_RS04605 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD09_RS04700 SM00271 DnaJ molecular chaperone homology domain AMD09_RS04720 SM00046 Diacylglycerol kinase catalytic domain (presumed) AMD09_RS04740 SM00903 Flavin reductase like domain AMD09_RS04760 SM00100 Cyclic nucleotide-monophosphate binding domain AMD09_RS04760 SM00419 helix_turn_helix, cAMP Regulatory protein AMD09_RS04815 SM00387 Histidine kinase-like ATPases AMD09_RS04815 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS04815 SM00448 cheY-homologous receiver domain AMD09_RS04820 SM00052 Putative diguanylate phosphodiesterase AMD09_RS04820 SM00267 diguanylate cyclase AMD09_RS04820 SM00448 cheY-homologous receiver domain AMD09_RS04880 SM00563 Phosphate acyltransferases AMD09_RS04905 SM01209 AMD09_RS04905 AMD09_RS04905 SM01210 AMD09_RS04905 AMD09_RS04915 SM00798 AICARFT/IMPCHase bienzyme AMD09_RS04915 SM00851 MGS-like domain AMD09_RS04930 SM00195 Dual specificity phosphatase, catalytic domain AMD09_RS04950 SM00563 Phosphate acyltransferases AMD09_RS04975 SM00530 Helix-turn-helix XRE-family like proteins AMD09_RS05005 SM00878 Biotin carboxylase C-terminal domain AMD09_RS05035 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS05045 SM00234 in StAR and phosphatidylcholine transfer protein AMD09_RS05065 SM00883 Chaperonin 10 Kd subunit AMD09_RS05125 SM00944 Pro-kumamolisin, activation domain AMD09_RS05140 SM00867 YceI-like domain AMD09_RS05195 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD09_RS05205 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD09_RS05205 SM00895 AMD09_RS05205 AMD09_RS05225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS05225 SM00331 Sigma factor PP2C-like phosphatases AMD09_RS05270 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS05345 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD09_RS05375 SM00354 helix_turn _helix lactose operon repressor AMD09_RS05430 SM00869 Autotransporter beta-domain AMD09_RS05475 SM00530 Helix-turn-helix XRE-family like proteins AMD09_RS05580 SM00382 ATPases associated with a variety of cellular activities AMD09_RS05615 SM00318 Staphylococcal nuclease homologues AMD09_RS05625 SM00528 Domain in histone-like proteins of HNS family AMD09_RS05630 SM00642 Alpha-amylase domain AMD09_RS05645 SM00448 cheY-homologous receiver domain AMD09_RS05645 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS05650 SM00387 Histidine kinase-like ATPases AMD09_RS05650 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS05710 SM00382 ATPases associated with a variety of cellular activities AMD09_RS05710 SM00448 cheY-homologous receiver domain AMD09_RS05715 SM00387 Histidine kinase-like ATPases AMD09_RS05715 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS05725 SM00881 CoA binding domain AMD09_RS05735 SM01126 AMD09_RS05735 AMD09_RS05965 SM00448 cheY-homologous receiver domain AMD09_RS05970 SM00387 Histidine kinase-like ATPases AMD09_RS06065 SM00387 Histidine kinase-like ATPases AMD09_RS06085 SM00382 ATPases associated with a variety of cellular activities AMD09_RS06085 SM00994 ClpX C4-type zinc finger AMD09_RS06085 SM01086 C-terminal, D2-small domain, of ClpB protein AMD09_RS06090 SM00382 ATPases associated with a variety of cellular activities AMD09_RS06090 SM00464 Found in ATP-dependent protease La (LON) AMD09_RS06095 SM00411 bacterial (prokaryotic) histone like domain AMD09_RS06120 SM00257 Lysin motif AMD09_RS06125 SM00849 Metallo-beta-lactamase superfamily AMD09_RS06140 SM00479 AMD09_RS06140 AMD09_RS06145 SM00331 Sigma factor PP2C-like phosphatases AMD09_RS06145 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AMD09_RS06170 SM00849 Metallo-beta-lactamase superfamily AMD09_RS06175 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD09_RS06240 SM00382 ATPases associated with a variety of cellular activities AMD09_RS06250 SM00493 AMD09_RS06250 AMD09_RS06265 SM00460 Transglutaminase/protease-like homologues AMD09_RS06275 SM00382 ATPases associated with a variety of cellular activities AMD09_RS06325 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AMD09_RS06330 SM00822 AMD09_RS06330 AMD09_RS06340 SM00825 Beta-ketoacyl synthase AMD09_RS06375 SM00382 ATPases associated with a variety of cellular activities AMD09_RS06415 SM01359 AMD09_RS06415 AMD09_RS06415 SM01360 AMD09_RS06415 AMD09_RS06450 SM00271 DnaJ molecular chaperone homology domain AMD09_RS06455 SM00448 cheY-homologous receiver domain AMD09_RS06460 SM00244 prohibitin homologues AMD09_RS06465 SM00244 prohibitin homologues AMD09_RS06470 SM01321 AMD09_RS06470 AMD09_RS06475 SM00788 Adenylosuccinate synthetase AMD09_RS06490 SM00822 AMD09_RS06490 AMD09_RS06545 SM00220 Serine/Threonine protein kinases, catalytic domain AMD09_RS06565 SM00855 Phosphoglycerate mutase family AMD09_RS06620 SM00052 Putative diguanylate phosphodiesterase AMD09_RS06625 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD09_RS06635 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD09_RS06640 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMD09_RS06655 SM00974 AMD09_RS06655 AMD09_RS06675 SM00966 SpoVT / AbrB like domain AMD09_RS06695 SM00481 DNA polymerase alpha chain like domain AMD09_RS06705 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD09_RS06740 SM00091 PAS domain AMD09_RS06740 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS06765 SM00487 DEAD-like helicases superfamily AMD09_RS06765 SM00490 helicase superfamily c-terminal domain AMD09_RS06765 SM00982 AMD09_RS06765 AMD09_RS06765 SM01058 CarD-like/TRCF domain AMD09_RS06780 SM00448 cheY-homologous receiver domain AMD09_RS06780 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS06785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS06785 SM00387 Histidine kinase-like ATPases AMD09_RS06785 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS06790 SM00645 Papain family cysteine protease AMD09_RS06860 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS06925 SM00829 Enoylreductase AMD09_RS06945 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS06945 SM00478 endonuclease III AMD09_RS06945 SM01009 AlkA N-terminal domain AMD09_RS06990 SM00487 DEAD-like helicases superfamily AMD09_RS06990 SM00490 helicase superfamily c-terminal domain AMD09_RS06995 SM00052 Putative diguanylate phosphodiesterase AMD09_RS06995 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD09_RS06995 SM00091 PAS domain AMD09_RS06995 SM00267 diguanylate cyclase AMD09_RS07000 SM00363 S4 RNA-binding domain AMD09_RS07005 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS07005 SM00267 diguanylate cyclase AMD09_RS07040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS07040 SM00387 Histidine kinase-like ATPases AMD09_RS07040 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS07045 SM00448 cheY-homologous receiver domain AMD09_RS07045 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS07075 SM00382 ATPases associated with a variety of cellular activities AMD09_RS07210 SM00316 Ribosomal protein S1-like RNA-binding domain AMD09_RS07245 SM01351 AMD09_RS07245 AMD09_RS07260 SM00977 TilS substrate C-terminal domain AMD09_RS07265 SM00098 Alkaline phosphatase homologues AMD09_RS07320 SM01160 AMD09_RS07320 AMD09_RS07385 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD09_RS07415 SM00257 Lysin motif AMD09_RS07445 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD09_RS07520 SM00052 Putative diguanylate phosphodiesterase AMD09_RS07520 SM00267 diguanylate cyclase AMD09_RS07520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS07535 SM00822 AMD09_RS07535 AMD09_RS07580 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMD09_RS07585 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMD09_RS07635 SM00316 Ribosomal protein S1-like RNA-binding domain AMD09_RS07635 SM00322 K homology RNA-binding domain AMD09_RS07655 SM01387 AMD09_RS07655 AMD09_RS07660 SM00316 Ribosomal protein S1-like RNA-binding domain AMD09_RS07660 SM00322 K homology RNA-binding domain AMD09_RS07680 SM01001 AIR carboxylase AMD09_RS07805 SM00530 Helix-turn-helix XRE-family like proteins AMD09_RS07845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS07850 SM00421 helix_turn_helix, Lux Regulon AMD09_RS07850 SM00448 cheY-homologous receiver domain AMD09_RS07855 SM00387 Histidine kinase-like ATPases AMD09_RS07860 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS07905 SM00448 cheY-homologous receiver domain AMD09_RS07930 SM00052 Putative diguanylate phosphodiesterase AMD09_RS07935 SM00869 Autotransporter beta-domain AMD09_RS07940 SM00421 helix_turn_helix, Lux Regulon AMD09_RS07940 SM00448 cheY-homologous receiver domain AMD09_RS07945 SM00387 Histidine kinase-like ATPases AMD09_RS07945 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS07970 SM00869 Autotransporter beta-domain AMD09_RS07990 SM00448 cheY-homologous receiver domain AMD09_RS07990 SM00850 LytTr DNA-binding domain AMD09_RS08140 SM01034 Sensors of blue-light using FAD AMD09_RS08180 SM00363 S4 RNA-binding domain AMD09_RS08185 SM00316 Ribosomal protein S1-like RNA-binding domain AMD09_RS08190 SM00421 helix_turn_helix, Lux Regulon AMD09_RS08190 SM00448 cheY-homologous receiver domain AMD09_RS08195 SM00450 Rhodanese Homology Domain AMD09_RS08215 SM00984 UDP binding domain AMD09_RS08250 SM00823 Phosphopantetheine attachment site AMD09_RS08305 SM00155 Phospholipase D. Active site motifs. AMD09_RS08315 SM00490 helicase superfamily c-terminal domain AMD09_RS08325 SM00490 helicase superfamily c-terminal domain AMD09_RS08330 SM00382 ATPases associated with a variety of cellular activities AMD09_RS08340 SM00487 DEAD-like helicases superfamily AMD09_RS08355 SM00382 ATPases associated with a variety of cellular activities AMD09_RS08410 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD09_RS08410 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD09_RS08410 SM00493 AMD09_RS08410 AMD09_RS08495 SM00487 DEAD-like helicases superfamily AMD09_RS08620 SM00953 AMD09_RS08620 AMD09_RS08680 SM00530 Helix-turn-helix XRE-family like proteins AMD09_RS08690 SM00382 ATPases associated with a variety of cellular activities AMD09_RS08715 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD09_RS08715 SM00465 GIY-YIG type nucleases (URI domain) AMD09_RS08725 SM00226 Low molecular weight phosphatase family AMD09_RS08740 SM00382 ATPases associated with a variety of cellular activities AMD09_RS08755 SM00849 Metallo-beta-lactamase superfamily AMD09_RS08765 SM00382 ATPases associated with a variety of cellular activities AMD09_RS08815 SM00382 ATPases associated with a variety of cellular activities AMD09_RS08900 SM00448 cheY-homologous receiver domain AMD09_RS08905 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS08905 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD09_RS08905 SM00091 PAS domain AMD09_RS08905 SM00387 Histidine kinase-like ATPases AMD09_RS08905 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS08905 SM00448 cheY-homologous receiver domain AMD09_RS08910 SM00316 Ribosomal protein S1-like RNA-binding domain AMD09_RS08910 SM00732 Likely ribonuclease with RNase H fold. AMD09_RS08980 SM00479 AMD09_RS08980 AMD09_RS08990 SM00529 Helix-turn-helix diphteria tox regulatory element AMD09_RS09015 SM00852 Probable molybdopterin binding domain AMD09_RS09060 SM00450 Rhodanese Homology Domain AMD09_RS09065 SM00852 Probable molybdopterin binding domain AMD09_RS09070 SM00382 ATPases associated with a variety of cellular activities AMD09_RS09075 SM00564 beta-propeller repeat AMD09_RS09090 SM00028 Tetratricopeptide repeats AMD09_RS09100 SM00562 AMD09_RS09100 AMD09_RS09130 SM00382 ATPases associated with a variety of cellular activities AMD09_RS09150 SM00382 ATPases associated with a variety of cellular activities AMD09_RS09150 SM00843 AMD09_RS09150 AMD09_RS09170 SM00316 Ribosomal protein S1-like RNA-binding domain AMD09_RS09175 SM00382 ATPases associated with a variety of cellular activities AMD09_RS09175 SM01086 C-terminal, D2-small domain, of ClpB protein AMD09_RS09200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS09210 SM00052 Putative diguanylate phosphodiesterase AMD09_RS09210 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD09_RS09210 SM00091 PAS domain AMD09_RS09210 SM00267 diguanylate cyclase AMD09_RS09215 SM00091 PAS domain AMD09_RS09215 SM00387 Histidine kinase-like ATPases AMD09_RS09220 SM00052 Putative diguanylate phosphodiesterase AMD09_RS09220 SM00267 diguanylate cyclase AMD09_RS09220 SM00448 cheY-homologous receiver domain AMD09_RS09225 SM00387 Histidine kinase-like ATPases AMD09_RS09240 SM00858 AMD09_RS09240 AMD09_RS09245 SM00260 Two component signalling adaptor domain AMD09_RS09245 SM00448 cheY-homologous receiver domain AMD09_RS09290 SM00047 Lysozyme subfamily 2 AMD09_RS09330 SM00421 helix_turn_helix, Lux Regulon AMD09_RS09330 SM00448 cheY-homologous receiver domain AMD09_RS09340 SM00448 cheY-homologous receiver domain AMD09_RS09345 SM00382 ATPases associated with a variety of cellular activities AMD09_RS09370 SM00822 AMD09_RS09370 AMD09_RS09420 SM00382 ATPases associated with a variety of cellular activities AMD09_RS09475 SM00267 diguanylate cyclase AMD09_RS09485 SM00267 diguanylate cyclase AMD09_RS09490 SM00052 Putative diguanylate phosphodiesterase AMD09_RS09490 SM00267 diguanylate cyclase AMD09_RS09505 SM00382 ATPases associated with a variety of cellular activities AMD09_RS09505 SM00962 SRP54-type protein, GTPase domain AMD09_RS09520 SM00448 cheY-homologous receiver domain AMD09_RS09530 SM00073 Histidine Phosphotransfer domain AMD09_RS09530 SM00260 Two component signalling adaptor domain AMD09_RS09530 SM00387 Histidine kinase-like ATPases AMD09_RS09530 SM01231 AMD09_RS09530 AMD09_RS09550 SM00530 Helix-turn-helix XRE-family like proteins AMD09_RS09585 SM00382 ATPases associated with a variety of cellular activities AMD09_RS09755 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD09_RS09755 SM01240 AMD09_RS09755 AMD09_RS09780 SM00822 AMD09_RS09780 AMD09_RS09790 SM00028 Tetratricopeptide repeats AMD09_RS09800 SM00411 bacterial (prokaryotic) histone like domain AMD09_RS09805 SM00316 Ribosomal protein S1-like RNA-binding domain AMD09_RS09880 SM00354 helix_turn _helix lactose operon repressor AMD09_RS09905 SM00363 S4 RNA-binding domain AMD09_RS09930 SM00382 ATPases associated with a variety of cellular activities AMD09_RS09980 SM00357 Cold shock protein domain AMD09_RS09985 SM00382 ATPases associated with a variety of cellular activities AMD09_RS09990 SM00382 ATPases associated with a variety of cellular activities AMD09_RS10020 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD09_RS10030 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD09_RS10045 SM00859 Semialdehyde dehydrogenase, NAD binding domain AMD09_RS10085 SM00840 AMD09_RS10085 AMD09_RS10110 SM01234 AMD09_RS10110 AMD09_RS10150 SM00849 Metallo-beta-lactamase superfamily AMD09_RS10205 SM00841 Elongation factor P, C-terminal AMD09_RS10205 SM01185 AMD09_RS10205 AMD09_RS10215 SM00052 Putative diguanylate phosphodiesterase AMD09_RS10215 SM00267 diguanylate cyclase AMD09_RS10215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS10250 SM00382 ATPases associated with a variety of cellular activities AMD09_RS10255 SM00487 DEAD-like helicases superfamily AMD09_RS10255 SM00490 helicase superfamily c-terminal domain AMD09_RS10280 SM00357 Cold shock protein domain AMD09_RS10285 SM01322 AMD09_RS10285 AMD09_RS10295 SM00052 Putative diguanylate phosphodiesterase AMD09_RS10295 SM00267 diguanylate cyclase AMD09_RS10310 SM00822 AMD09_RS10310 AMD09_RS10330 SM00853 MutL C terminal dimerisation domain AMD09_RS10330 SM01340 AMD09_RS10330 AMD09_RS10335 SM00646 AMD09_RS10335 AMD09_RS10370 SM00474 3'-5' exonuclease AMD09_RS10385 SM00528 Domain in histone-like proteins of HNS family AMD09_RS10470 SM00857 Resolvase, N terminal domain AMD09_RS10540 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS10540 SM00267 diguanylate cyclase AMD09_RS10545 SM00260 Two component signalling adaptor domain AMD09_RS10550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS10550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS10560 SM00487 DEAD-like helicases superfamily AMD09_RS10560 SM00490 helicase superfamily c-terminal domain AMD09_RS10615 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD09_RS10640 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD09_RS10640 SM01091 Transporter associated domain AMD09_RS10675 SM00382 ATPases associated with a variety of cellular activities AMD09_RS10705 SM01230 AMD09_RS10705 AMD09_RS10715 SM01230 AMD09_RS10715 AMD09_RS10725 SM00267 diguanylate cyclase AMD09_RS10725 SM00448 cheY-homologous receiver domain AMD09_RS10775 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD09_RS10775 SM00091 PAS domain AMD09_RS10775 SM00387 Histidine kinase-like ATPases AMD09_RS10775 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS10775 SM00448 cheY-homologous receiver domain AMD09_RS10775 SM01079 AMD09_RS10775 AMD09_RS10780 SM00448 cheY-homologous receiver domain AMD09_RS10780 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD09_RS10810 SM00354 helix_turn _helix lactose operon repressor AMD09_RS10870 SM01323 AMD09_RS10870 AMD09_RS10885 SM00344 helix_turn_helix ASNC type AMD09_RS10965 SM00387 Histidine kinase-like ATPases AMD09_RS11010 SM00944 Pro-kumamolisin, activation domain AMD09_RS11060 SM01130 AMD09_RS11060 AMD09_RS11085 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS11090 SM00382 ATPases associated with a variety of cellular activities AMD09_RS11090 SM00962 SRP54-type protein, GTPase domain AMD09_RS11090 SM00963 SRP54-type protein, helical bundle domain AMD09_RS11095 SM00478 endonuclease III AMD09_RS11105 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD09_RS11105 SM00091 PAS domain AMD09_RS11105 SM00387 Histidine kinase-like ATPases AMD09_RS11105 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS11105 SM00448 cheY-homologous receiver domain AMD09_RS11120 SM00465 GIY-YIG type nucleases (URI domain) AMD09_RS11150 SM00507 HNH nucleases AMD09_RS11155 SM00861 Transketolase, pyrimidine binding domain AMD09_RS11180 SM00849 Metallo-beta-lactamase superfamily AMD09_RS11265 SM00422 helix_turn_helix, mercury resistance AMD09_RS11270 SM00411 bacterial (prokaryotic) histone like domain AMD09_RS11275 SM00873 B3/4 domain AMD09_RS11275 SM00874 tRNA synthetase B5 domain AMD09_RS11275 SM00896 Ferredoxin-fold anticodon binding domain AMD09_RS11300 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD09_RS11305 SM00354 helix_turn _helix lactose operon repressor AMD09_RS11310 SM00642 Alpha-amylase domain AMD09_RS11340 SM00642 Alpha-amylase domain AMD09_RS11380 SM00758 AMD09_RS11380 AMD09_RS11425 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD09_RS11450 SM01130 AMD09_RS11450 AMD09_RS11470 SM00670 Large family of predicted nucleotide-binding domains AMD09_RS11525 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD09_RS11525 SM00091 PAS domain AMD09_RS11525 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS11540 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AMD09_RS11550 SM00382 ATPases associated with a variety of cellular activities AMD09_RS11590 SM00382 ATPases associated with a variety of cellular activities AMD09_RS11600 SM01103 AMD09_RS11600 AMD09_RS11610 SM00257 Lysin motif AMD09_RS11630 SM00463 Small MutS-related domain AMD09_RS11655 SM01192 AMD09_RS11655 AMD09_RS11655 SM01193 AMD09_RS11655 AMD09_RS11680 SM00387 Histidine kinase-like ATPases AMD09_RS11680 SM00433 TopoisomeraseII AMD09_RS11705 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD09_RS11705 SM01091 Transporter associated domain AMD09_RS11730 SM00382 ATPases associated with a variety of cellular activities AMD09_RS11740 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD09_RS11895 SM00091 PAS domain AMD09_RS11895 SM00387 Histidine kinase-like ATPases AMD09_RS11895 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS11895 SM00448 cheY-homologous receiver domain AMD09_RS11900 SM00382 ATPases associated with a variety of cellular activities AMD09_RS11905 SM00448 cheY-homologous receiver domain AMD09_RS11910 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD09_RS11910 SM00091 PAS domain AMD09_RS11910 SM00387 Histidine kinase-like ATPases AMD09_RS11910 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS11910 SM00448 cheY-homologous receiver domain AMD09_RS11925 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD09_RS11935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS11935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS11965 SM00530 Helix-turn-helix XRE-family like proteins AMD09_RS12030 SM00966 SpoVT / AbrB like domain AMD09_RS12075 SM00736 Dystroglycan-type cadherin-like domains. AMD09_RS12090 SM00382 ATPases associated with a variety of cellular activities AMD09_RS12265 SM00220 Serine/Threonine protein kinases, catalytic domain AMD09_RS12295 SM00260 Two component signalling adaptor domain AMD09_RS12305 SM00448 cheY-homologous receiver domain AMD09_RS12310 SM00073 Histidine Phosphotransfer domain AMD09_RS12310 SM00260 Two component signalling adaptor domain AMD09_RS12310 SM00387 Histidine kinase-like ATPases AMD09_RS12310 SM01231 AMD09_RS12310 AMD09_RS12315 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS12325 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12325 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS12325 SM01049 AMD09_RS12325 AMD09_RS12330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS12340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS12350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS12355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS12365 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12365 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS12370 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS12375 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS12380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS12385 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS12395 SM00260 Two component signalling adaptor domain AMD09_RS12405 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS12405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS12410 SM00138 Methyltransferase, chemotaxis proteins AMD09_RS12420 SM00448 cheY-homologous receiver domain AMD09_RS12425 SM00052 Putative diguanylate phosphodiesterase AMD09_RS12425 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS12425 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD09_RS12425 SM00091 PAS domain AMD09_RS12425 SM00267 diguanylate cyclase AMD09_RS12445 SM00966 SpoVT / AbrB like domain AMD09_RS12470 SM00073 Histidine Phosphotransfer domain AMD09_RS12470 SM00387 Histidine kinase-like ATPases AMD09_RS12470 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS12470 SM00448 cheY-homologous receiver domain AMD09_RS12475 SM00448 cheY-homologous receiver domain AMD09_RS12475 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD09_RS12485 SM00937 AMD09_RS12485 AMD09_RS12490 SM00850 LytTr DNA-binding domain AMD09_RS12550 SM00851 MGS-like domain AMD09_RS12550 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMD09_RS12560 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AMD09_RS12595 SM00899 AMD09_RS12595 AMD09_RS12615 SM00822 AMD09_RS12615 AMD09_RS12620 SM00841 Elongation factor P, C-terminal AMD09_RS12620 SM01185 AMD09_RS12620 AMD09_RS12665 SM01007 Class II Aldolase and Adducin N-terminal domain AMD09_RS12740 SM00100 Cyclic nucleotide-monophosphate binding domain AMD09_RS12740 SM00419 helix_turn_helix, cAMP Regulatory protein AMD09_RS12785 SM00912 haemagglutination activity domain AMD09_RS12860 SM00014 Acid phosphatase homologues AMD09_RS12870 SM00387 Histidine kinase-like ATPases AMD09_RS12875 SM00448 cheY-homologous receiver domain AMD09_RS12885 SM00052 Putative diguanylate phosphodiesterase AMD09_RS12885 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS12885 SM00267 diguanylate cyclase AMD09_RS12955 SM00646 AMD09_RS12955 AMD09_RS12960 SM00642 Alpha-amylase domain AMD09_RS13005 SM00382 ATPases associated with a variety of cellular activities AMD09_RS13065 SM00487 DEAD-like helicases superfamily AMD09_RS13065 SM00490 helicase superfamily c-terminal domain AMD09_RS13170 SM00830 Chorismate mutase type II AMD09_RS13190 SM00240 Forkhead associated domain AMD09_RS13215 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD09_RS13215 SM00866 AMD09_RS13215 AMD09_RS13255 SM00434 DNA Topoisomerase IV AMD09_RS13275 SM00292 breast cancer carboxy-terminal domain AMD09_RS13275 SM00532 Ligase N family AMD09_RS13290 SM00771 ZipA, C-terminal domain (FtsZ-binding) AMD09_RS13295 SM00968 SMC proteins Flexible Hinge Domain AMD09_RS13355 SM00421 helix_turn_helix, Lux Regulon AMD09_RS13355 SM00448 cheY-homologous receiver domain AMD09_RS13400 SM00947 Carbonic anhydrase AMD09_RS13425 SM00479 AMD09_RS13425 AMD09_RS13455 SM00981 AMD09_RS13455 AMD09_RS13460 SM00382 ATPases associated with a variety of cellular activities AMD09_RS13480 SM00644 AMD09_RS13480 AMD09_RS13490 SM00450 Rhodanese Homology Domain AMD09_RS13515 SM00478 endonuclease III AMD09_RS13525 SM00947 Carbonic anhydrase AMD09_RS13560 SM00382 ATPases associated with a variety of cellular activities AMD09_RS13575 SM00479 AMD09_RS13575 AMD09_RS13580 SM00267 diguanylate cyclase AMD09_RS13585 SM00967 RNA 2'-O ribose methyltransferase substrate binding AMD09_RS13595 SM00316 Ribosomal protein S1-like RNA-binding domain AMD09_RS13595 SM00357 Cold shock protein domain AMD09_RS13595 SM00955 AMD09_RS13595 AMD09_RS13615 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AMD09_RS13625 SM01018 B12 binding domain AMD09_RS13645 SM00354 helix_turn _helix lactose operon repressor AMD09_RS13665 SM00984 UDP binding domain AMD09_RS13680 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD09_RS13685 SM00382 ATPases associated with a variety of cellular activities AMD09_RS13715 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD09_RS13715 SM01091 Transporter associated domain AMD09_RS13735 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD09_RS13745 SM00861 Transketolase, pyrimidine binding domain AMD09_RS13770 SM00382 ATPases associated with a variety of cellular activities AMD09_RS13810 SM00271 DnaJ molecular chaperone homology domain AMD09_RS13905 SM00530 Helix-turn-helix XRE-family like proteins AMD09_RS13935 SM00528 Domain in histone-like proteins of HNS family AMD09_RS13950 SM00530 Helix-turn-helix XRE-family like proteins AMD09_RS13965 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS13965 SM00267 diguanylate cyclase AMD09_RS13975 SM00267 diguanylate cyclase AMD09_RS14090 SM00357 Cold shock protein domain AMD09_RS14105 SM00947 Carbonic anhydrase AMD09_RS14120 SM00382 ATPases associated with a variety of cellular activities AMD09_RS14140 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD09_RS14170 SM00631 AMD09_RS14170 AMD09_RS14175 SM01217 AMD09_RS14175 AMD09_RS14200 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD09_RS14205 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS14210 SM00434 DNA Topoisomerase IV AMD09_RS14240 SM00710 Parallel beta-helix repeats AMD09_RS14240 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AMD09_RS14245 SM01172 AMD09_RS14245 AMD09_RS14265 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD09_RS14275 SM00972 Spore Coat Protein U domain AMD09_RS14290 SM00972 Spore Coat Protein U domain AMD09_RS14315 SM00267 diguanylate cyclase AMD09_RS14345 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD09_RS14385 SM00481 DNA polymerase alpha chain like domain AMD09_RS14470 SM00382 ATPases associated with a variety of cellular activities AMD09_RS14670 SM00671 Sel1-like repeats. AMD09_RS14670 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD09_RS14675 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMD09_RS14680 SM00869 Autotransporter beta-domain AMD09_RS14700 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS14700 SM00267 diguanylate cyclase AMD09_RS14730 SM00487 DEAD-like helicases superfamily AMD09_RS14730 SM00490 helicase superfamily c-terminal domain AMD09_RS14745 SM00357 Cold shock protein domain AMD09_RS14780 SM01118 AMD09_RS14780 AMD09_RS14790 SM00448 cheY-homologous receiver domain AMD09_RS14805 SM00358 Double-stranded RNA binding motif AMD09_RS14805 SM00535 Ribonuclease III family AMD09_RS14820 SM00838 Elongation factor G C-terminus AMD09_RS14825 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD09_RS14875 SM00530 Helix-turn-helix XRE-family like proteins AMD09_RS14900 SM00812 Alpha-L-fucosidase AMD09_RS14920 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AMD09_RS14920 SM00534 ATPase domain of DNA mismatch repair MUTS family AMD09_RS14990 SM00382 ATPases associated with a variety of cellular activities AMD09_RS14990 SM00962 SRP54-type protein, GTPase domain AMD09_RS14990 SM00963 SRP54-type protein, helical bundle domain AMD09_RS15010 SM00813 Alpha-L-arabinofuranosidase C-terminus AMD09_RS15020 SM00448 cheY-homologous receiver domain AMD09_RS15025 SM00091 PAS domain AMD09_RS15025 SM00387 Histidine kinase-like ATPases AMD09_RS15025 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS15030 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS15030 SM00387 Histidine kinase-like ATPases AMD09_RS15030 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS15030 SM00448 cheY-homologous receiver domain AMD09_RS15035 SM00138 Methyltransferase, chemotaxis proteins AMD09_RS15045 SM00387 Histidine kinase-like ATPases AMD09_RS15045 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS15045 SM00448 cheY-homologous receiver domain AMD09_RS15070 SM00387 Histidine kinase-like ATPases AMD09_RS15070 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS15070 SM00448 cheY-homologous receiver domain AMD09_RS15075 SM00387 Histidine kinase-like ATPases AMD09_RS15075 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS15110 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS15115 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS15125 SM00382 ATPases associated with a variety of cellular activities AMD09_RS15130 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD09_RS15175 SM00904 Riboflavin kinase AMD09_RS15260 SM00244 prohibitin homologues AMD09_RS15280 SM00478 endonuclease III AMD09_RS15295 SM00421 helix_turn_helix, Lux Regulon AMD09_RS15295 SM00448 cheY-homologous receiver domain AMD09_RS15335 SM00387 Histidine kinase-like ATPases AMD09_RS15335 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS15340 SM00448 cheY-homologous receiver domain AMD09_RS15340 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS15390 SM01060 AMD09_RS15390 AMD09_RS15420 SM00073 Histidine Phosphotransfer domain AMD09_RS15420 SM00260 Two component signalling adaptor domain AMD09_RS15420 SM00387 Histidine kinase-like ATPases AMD09_RS15420 SM01231 AMD09_RS15420 AMD09_RS15425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS15425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS15430 SM00260 Two component signalling adaptor domain AMD09_RS15435 SM00052 Putative diguanylate phosphodiesterase AMD09_RS15435 SM00448 cheY-homologous receiver domain AMD09_RS15440 SM00138 Methyltransferase, chemotaxis proteins AMD09_RS15445 SM00448 cheY-homologous receiver domain AMD09_RS15450 SM00155 Phospholipase D. Active site motifs. AMD09_RS15465 SM00855 Phosphoglycerate mutase family AMD09_RS15515 SM00248 ankyrin repeats AMD09_RS15555 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMD09_RS15560 SM01092 CO dehydrogenase flavoprotein C-terminal domain AMD09_RS15570 SM00829 Enoylreductase AMD09_RS15575 SM00267 diguanylate cyclase AMD09_RS15640 SM00732 Likely ribonuclease with RNase H fold. AMD09_RS15675 SM00382 ATPases associated with a variety of cellular activities AMD09_RS15690 SM00411 bacterial (prokaryotic) histone like domain AMD09_RS15720 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain AMD09_RS15735 SM00382 ATPases associated with a variety of cellular activities AMD09_RS15765 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD09_RS15770 SM00671 Sel1-like repeats. AMD09_RS15800 SM00054 EF-hand, calcium binding motif AMD09_RS15890 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD09_RS15910 SM00382 ATPases associated with a variety of cellular activities AMD09_RS15955 SM00924 MgtE intracellular N domain AMD09_RS15985 SM00656 AMD09_RS15985 AMD09_RS16005 SM00421 helix_turn_helix, Lux Regulon AMD09_RS16030 SM00849 Metallo-beta-lactamase superfamily AMD09_RS16040 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. AMD09_RS16060 SM00422 helix_turn_helix, mercury resistance AMD09_RS16200 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS16210 SM00387 Histidine kinase-like ATPases AMD09_RS16210 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS16210 SM00448 cheY-homologous receiver domain AMD09_RS16215 SM00387 Histidine kinase-like ATPases AMD09_RS16215 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS16215 SM00448 cheY-homologous receiver domain AMD09_RS16225 SM00387 Histidine kinase-like ATPases AMD09_RS16225 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS16225 SM00448 cheY-homologous receiver domain AMD09_RS16230 SM00867 YceI-like domain AMD09_RS16240 SM00867 YceI-like domain AMD09_RS16295 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD09_RS16425 SM00812 Alpha-L-fucosidase AMD09_RS16430 SM00636 AMD09_RS16430 AMD09_RS16445 SM00758 AMD09_RS16445 AMD09_RS16445 SM01217 AMD09_RS16445 AMD09_RS16475 SM01149 AMD09_RS16475 AMD09_RS16535 SM00260 Two component signalling adaptor domain AMD09_RS16545 SM00073 Histidine Phosphotransfer domain AMD09_RS16545 SM00260 Two component signalling adaptor domain AMD09_RS16545 SM00387 Histidine kinase-like ATPases AMD09_RS16545 SM00448 cheY-homologous receiver domain AMD09_RS16545 SM01231 AMD09_RS16545 AMD09_RS16550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS16555 SM00260 Two component signalling adaptor domain AMD09_RS16560 SM00448 cheY-homologous receiver domain AMD09_RS16565 SM00448 cheY-homologous receiver domain AMD09_RS16590 SM00491 AMD09_RS16590 AMD09_RS16615 SM00954 Region found in RelA / SpoT proteins AMD09_RS16660 SM00382 ATPases associated with a variety of cellular activities AMD09_RS16660 SM00487 DEAD-like helicases superfamily AMD09_RS16660 SM00490 helicase superfamily c-terminal domain AMD09_RS16660 SM00847 Helicase associated domain (HA2) Add an annotation AMD09_RS16670 SM00341 Helicase and RNase D C-terminal AMD09_RS16670 SM00487 DEAD-like helicases superfamily AMD09_RS16670 SM00490 helicase superfamily c-terminal domain AMD09_RS16670 SM00956 AMD09_RS16670 AMD09_RS16680 SM00448 cheY-homologous receiver domain AMD09_RS16705 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS16705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS16720 SM00448 cheY-homologous receiver domain AMD09_RS16725 SM00091 PAS domain AMD09_RS16725 SM00911 HWE histidine kinase AMD09_RS16780 SM00382 ATPases associated with a variety of cellular activities AMD09_RS16795 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AMD09_RS16830 SM00834 Putative regulatory protein AMD09_RS16870 SM00382 ATPases associated with a variety of cellular activities AMD09_RS16975 SM00855 Phosphoglycerate mutase family AMD09_RS17025 SM00382 ATPases associated with a variety of cellular activities AMD09_RS17025 SM01086 C-terminal, D2-small domain, of ClpB protein AMD09_RS17030 SM00382 ATPases associated with a variety of cellular activities AMD09_RS17040 SM00062 Bacterial periplasmic substrate-binding proteins AMD09_RS17115 SM00564 beta-propeller repeat AMD09_RS17120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS17230 SM00382 ATPases associated with a variety of cellular activities AMD09_RS17285 SM01329 AMD09_RS17285 AMD09_RS17305 SM00448 cheY-homologous receiver domain AMD09_RS17305 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS17310 SM00387 Histidine kinase-like ATPases AMD09_RS17310 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS17330 SM00014 Acid phosphatase homologues AMD09_RS17380 SM00855 Phosphoglycerate mutase family AMD09_RS17405 SM00829 Enoylreductase AMD09_RS17415 SM00382 ATPases associated with a variety of cellular activities AMD09_RS17465 SM00829 Enoylreductase AMD09_RS17495 SM00838 Elongation factor G C-terminus AMD09_RS17540 SM00662 RNA polymerases D AMD09_RS17545 SM00363 S4 RNA-binding domain AMD09_RS17545 SM01390 AMD09_RS17545 AMD09_RS17605 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD09_RS17610 SM01374 AMD09_RS17610 AMD09_RS17630 SM00322 K homology RNA-binding domain AMD09_RS17645 SM01382 AMD09_RS17645 AMD09_RS17645 SM01383 AMD09_RS17645 AMD09_RS17665 SM01403 AMD09_RS17665 AMD09_RS17675 SM00838 Elongation factor G C-terminus AMD09_RS17675 SM00889 Elongation factor G, domain IV AMD09_RS17690 SM00663 RNA polymerase I subunit A N-terminus AMD09_RS17715 SM00649 Ribosomal protein L11/L12 AMD09_RS17720 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AMD09_RS17720 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AMD09_RS17770 SM01400 AMD09_RS17770 AMD09_RS17790 SM00028 Tetratricopeptide repeats AMD09_RS17800 SM00937 AMD09_RS17800 AMD09_RS17805 SM00028 Tetratricopeptide repeats AMD09_RS17810 SM00852 Probable molybdopterin binding domain AMD09_RS17920 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AMD09_RS17920 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AMD09_RS17950 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AMD09_RS17950 SM00475 5'-3' exonuclease AMD09_RS18015 SM00421 helix_turn_helix, Lux Regulon AMD09_RS18020 SM00387 Histidine kinase-like ATPases AMD09_RS18020 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS18020 SM00448 cheY-homologous receiver domain AMD09_RS18025 SM00448 cheY-homologous receiver domain AMD09_RS18100 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD09_RS18135 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD09_RS18135 SM00895 AMD09_RS18135 AMD09_RS18200 SM00650 Ribosomal RNA adenine dimethylases AMD09_RS18215 SM00382 ATPases associated with a variety of cellular activities AMD09_RS18275 SM00382 ATPases associated with a variety of cellular activities AMD09_RS18285 SM00382 ATPases associated with a variety of cellular activities AMD09_RS18335 SM00387 Histidine kinase-like ATPases AMD09_RS18335 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS18340 SM00448 cheY-homologous receiver domain AMD09_RS18340 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS18350 SM00382 ATPases associated with a variety of cellular activities AMD09_RS18370 SM00382 ATPases associated with a variety of cellular activities AMD09_RS18485 SM00996 S-adenosyl-L-homocysteine hydrolase AMD09_RS18485 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AMD09_RS18520 SM00642 Alpha-amylase domain AMD09_RS18535 SM00944 Pro-kumamolisin, activation domain AMD09_RS18540 SM00829 Enoylreductase AMD09_RS18565 SM00957 SecA DEAD-like domain AMD09_RS18565 SM00958 SecA preprotein cross-linking domain AMD09_RS18585 SM00864 Tubulin/FtsZ family, GTPase domain AMD09_RS18585 SM00865 Tubulin/FtsZ family, C-terminal domain AMD09_RS18590 SM00842 Cell division protein FtsA AMD09_RS18705 SM00448 cheY-homologous receiver domain AMD09_RS18705 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS18710 SM00387 Histidine kinase-like ATPases AMD09_RS18710 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS18740 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain AMD09_RS18800 SM00382 ATPases associated with a variety of cellular activities AMD09_RS18820 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD09_RS18840 SM00829 Enoylreductase AMD09_RS18860 SM00448 cheY-homologous receiver domain AMD09_RS18860 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS18865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS18865 SM00387 Histidine kinase-like ATPases AMD09_RS18865 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS18875 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS18880 SM00849 Metallo-beta-lactamase superfamily AMD09_RS18945 SM00354 helix_turn _helix lactose operon repressor AMD09_RS18955 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD09_RS18955 SM00866 AMD09_RS18955 AMD09_RS19025 SM00382 ATPases associated with a variety of cellular activities AMD09_RS19050 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. AMD09_RS19080 SM00387 Histidine kinase-like ATPases AMD09_RS19080 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS19080 SM00448 cheY-homologous receiver domain AMD09_RS19085 SM00448 cheY-homologous receiver domain AMD09_RS19090 SM00387 Histidine kinase-like ATPases AMD09_RS19090 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS19095 SM00749 bacterial OsmY and nodulation domain AMD09_RS19105 SM01350 AMD09_RS19105 AMD09_RS19160 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AMD09_RS19160 SM00245 tail specific protease AMD09_RS19165 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD09_RS19185 SM00936 Penicillin-binding protein 5, C-terminal domain AMD09_RS19205 SM00710 Parallel beta-helix repeats AMD09_RS19230 SM00268 Actin AMD09_RS19240 SM00382 ATPases associated with a variety of cellular activities AMD09_RS19250 SM00829 Enoylreductase AMD09_RS19265 SM00062 Bacterial periplasmic substrate-binding proteins AMD09_RS19265 SM00248 ankyrin repeats AMD09_RS19270 SM00564 beta-propeller repeat AMD09_RS19290 SM01263 AMD09_RS19290 AMD09_RS19295 SM00267 diguanylate cyclase AMD09_RS19325 SM00382 ATPases associated with a variety of cellular activities AMD09_RS19325 SM01086 C-terminal, D2-small domain, of ClpB protein AMD09_RS19405 SM00448 cheY-homologous receiver domain AMD09_RS19405 SM00850 LytTr DNA-binding domain AMD09_RS19435 SM00267 diguanylate cyclase AMD09_RS19445 SM00637 AMD09_RS19445 AMD09_RS19450 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS19450 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS19450 SM01049 AMD09_RS19450 AMD09_RS19455 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD09_RS19455 SM00091 PAS domain AMD09_RS19455 SM00267 diguanylate cyclase AMD09_RS19465 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS19480 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AMD09_RS19480 SM01232 AMD09_RS19480 AMD09_RS19520 SM00382 ATPases associated with a variety of cellular activities AMD09_RS19530 SM00062 Bacterial periplasmic substrate-binding proteins AMD09_RS19655 SM00387 Histidine kinase-like ATPases AMD09_RS19655 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS19665 SM00382 ATPases associated with a variety of cellular activities AMD09_RS19740 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS19740 SM00387 Histidine kinase-like ATPases AMD09_RS19775 SM00506 Appr-1"-p processing enzyme AMD09_RS19815 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMD09_RS19840 SM00849 Metallo-beta-lactamase superfamily AMD09_RS19855 SM00382 ATPases associated with a variety of cellular activities AMD09_RS19925 SM00861 Transketolase, pyrimidine binding domain AMD09_RS19940 SM00028 Tetratricopeptide repeats AMD09_RS19940 SM00327 von Willebrand factor (vWF) type A domain AMD09_RS19945 SM00327 von Willebrand factor (vWF) type A domain AMD09_RS19960 SM00382 ATPases associated with a variety of cellular activities AMD09_RS19965 SM00965 Secretin and TonB N terminus short domain AMD09_RS20015 SM00487 DEAD-like helicases superfamily AMD09_RS20015 SM00490 helicase superfamily c-terminal domain AMD09_RS20025 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AMD09_RS20025 SM00954 Region found in RelA / SpoT proteins AMD09_RS20030 SM01409 AMD09_RS20030 AMD09_RS20035 SM00072 Guanylate kinase homologues. AMD09_RS20060 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD09_RS20085 SM01011 Aminopeptidase P, N-terminal domain AMD09_RS20155 SM00028 Tetratricopeptide repeats AMD09_RS20155 SM00382 ATPases associated with a variety of cellular activities AMD09_RS20155 SM00421 helix_turn_helix, Lux Regulon AMD09_RS20225 SM00464 Found in ATP-dependent protease La (LON) AMD09_RS20275 SM00342 helix_turn_helix, arabinose operon control protein AMD09_RS20280 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS20295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS20325 SM00917 LeuA allosteric (dimerisation) domain AMD09_RS20330 SM01329 AMD09_RS20330 AMD09_RS20350 SM00267 diguanylate cyclase AMD09_RS20400 SM00919 Malic enzyme, NAD binding domain AMD09_RS20400 SM01274 AMD09_RS20400 AMD09_RS20415 SM00387 Histidine kinase-like ATPases AMD09_RS20415 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS20415 SM00448 cheY-homologous receiver domain AMD09_RS20450 SM00421 helix_turn_helix, Lux Regulon AMD09_RS20450 SM00448 cheY-homologous receiver domain AMD09_RS20460 SM00387 Histidine kinase-like ATPases AMD09_RS20460 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS20465 SM00448 cheY-homologous receiver domain AMD09_RS20465 SM00862 Transcriptional regulatory protein, C terminal AMD09_RS20480 SM00822 AMD09_RS20480 AMD09_RS20485 SM00354 helix_turn _helix lactose operon repressor AMD09_RS20500 SM00642 Alpha-amylase domain AMD09_RS20510 SM01154 AMD09_RS20510 AMD09_RS20545 SM00450 Rhodanese Homology Domain AMD09_RS20690 SM00345 helix_turn_helix gluconate operon transcriptional repressor AMD09_RS20690 SM00866 AMD09_RS20690 AMD09_RS20750 SM00382 ATPases associated with a variety of cellular activities AMD09_RS20780 SM01211 AMD09_RS20780 AMD09_RS20845 SM00656 AMD09_RS20845 AMD09_RS20875 SM00528 Domain in histone-like proteins of HNS family AMD09_RS20890 SM00382 ATPases associated with a variety of cellular activities AMD09_RS20920 SM00882 Coenzyme A transferase AMD09_RS20925 SM00882 Coenzyme A transferase AMD09_RS20940 SM00984 UDP binding domain AMD09_RS20965 SM00893 Electron transfer flavoprotein domain AMD09_RS20970 SM00893 Electron transfer flavoprotein domain AMD09_RS21045 SM00382 ATPases associated with a variety of cellular activities AMD09_RS21060 SM00116 Domain in cystathionine beta-synthase and other proteins. AMD09_RS21095 SM00487 DEAD-like helicases superfamily AMD09_RS21095 SM00490 helicase superfamily c-terminal domain AMD09_RS21130 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS21165 SM00825 Beta-ketoacyl synthase AMD09_RS21235 SM00382 ATPases associated with a variety of cellular activities AMD09_RS21255 SM00382 ATPases associated with a variety of cellular activities AMD09_RS21255 SM00448 cheY-homologous receiver domain AMD09_RS21260 SM00387 Histidine kinase-like ATPases AMD09_RS21275 SM00830 Chorismate mutase type II AMD09_RS21285 SM00382 ATPases associated with a variety of cellular activities AMD09_RS21355 SM00986 Uracil DNA glycosylase superfamily AMD09_RS21355 SM00987 UreE urease accessory protein, C-terminal domain AMD09_RS21395 SM00382 ATPases associated with a variety of cellular activities AMD09_RS21395 SM00930 AMD09_RS21395 AMD09_RS21415 SM00387 Histidine kinase-like ATPases AMD09_RS21415 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS21415 SM00448 cheY-homologous receiver domain AMD09_RS21470 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD09_RS21470 SM00091 PAS domain AMD09_RS21470 SM00387 Histidine kinase-like ATPases AMD09_RS21470 SM00388 His Kinase A (phosphoacceptor) domain AMD09_RS21470 SM00448 cheY-homologous receiver domain AMD09_RS21490 SM01005 Alanine racemase, C-terminal domain AMD09_RS21500 SM00344 helix_turn_helix ASNC type AMD09_RS21555 SM00382 ATPases associated with a variety of cellular activities AMD09_RS21565 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. AMD09_RS21570 SM00986 Uracil DNA glycosylase superfamily AMD09_RS21570 SM00987 UreE urease accessory protein, C-terminal domain AMD09_RS21575 SM00729 Elongator protein 3, MiaB family, Radical SAM AMD09_RS21640 SM00448 cheY-homologous receiver domain AMD09_RS21640 SM00850 LytTr DNA-binding domain AMD09_RS21645 SM00387 Histidine kinase-like ATPases AMD09_RS21685 SM00091 PAS domain AMD09_RS21685 SM00138 Methyltransferase, chemotaxis proteins AMD09_RS21685 SM00911 HWE histidine kinase AMD09_RS21690 SM00448 cheY-homologous receiver domain AMD09_RS21700 SM00382 ATPases associated with a variety of cellular activities AMD09_RS21700 SM00448 cheY-homologous receiver domain AMD09_RS21755 SM00382 ATPases associated with a variety of cellular activities AMD09_RS21830 SM00382 ATPases associated with a variety of cellular activities AMD09_RS21835 SM00631 AMD09_RS21835 AMD09_RS21860 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AMD09_RS21860 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AMD09_RS21865 SM00477 DNA/RNA non-specific endonuclease AMD09_RS21865 SM00892 DNA/RNA non-specific endonuclease AMD09_RS21930 SM00382 ATPases associated with a variety of cellular activities AMD09_RS22145 SM00382 ATPases associated with a variety of cellular activities AMD09_RS22290 SM00257 Lysin motif AMD09_RS22315 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AMD09_RS22315 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AMD09_RS22315 SM00493 AMD09_RS22315 AMD09_RS22370 SM00487 DEAD-like helicases superfamily AMD09_RS22370 SM00490 helicase superfamily c-terminal domain AMD09_RS22405 SM00986 Uracil DNA glycosylase superfamily AMD09_RS22405 SM00987 UreE urease accessory protein, C-terminal domain AMD09_RS22410 SM00448 cheY-homologous receiver domain AMD09_RS22420 SM00382 ATPases associated with a variety of cellular activities AMD09_RS22425 SM00487 DEAD-like helicases superfamily AMD09_RS22425 SM00490 helicase superfamily c-terminal domain AMD09_RS22435 SM00357 Cold shock protein domain AMD09_RS22435 SM00382 ATPases associated with a variety of cellular activities AMD09_RS22435 SM00959 Rho termination factor, N-terminal domain AMD09_RS22465 SM00487 DEAD-like helicases superfamily AMD09_RS22505 SM00382 ATPases associated with a variety of cellular activities AMD09_RS22515 SM00257 Lysin motif AMD09_RS22545 SM01150 AMD09_RS22545 AMD09_RS22590 SM00644 AMD09_RS22590 AMD09_RS22600 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AMD09_RS22635 SM01217 AMD09_RS22635 AMD09_RS22640 SM00905 Dihydroneopterin aldolase AMD09_RS22665 SM00400 zinc finger AMD09_RS22665 SM00493 AMD09_RS22665 AMD09_RS22665 SM00766 DNA primase DnaG DnaB-binding AMD09_RS22770 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS22770 SM00091 PAS domain AMD09_RS22825 SM00347 helix_turn_helix multiple antibiotic resistance protein AMD09_RS22860 SM00155 Phospholipase D. Active site motifs. AMD09_RS22945 SM00796 Allophanate hydrolase subunit 1 AMD09_RS22945 SM00797 Allophanate hydrolase subunit 2 AMD09_RS22945 SM00878 Biotin carboxylase C-terminal domain AMD09_RS23005 SM00382 ATPases associated with a variety of cellular activities AMD09_RS23055 SM00829 Enoylreductase AMD09_RS23095 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AMD09_RS23095 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AMD09_RS23095 SM00091 PAS domain AMD09_RS23095 SM00267 diguanylate cyclase AMD09_RS23125 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AMD09_RS23150 SM00014 Acid phosphatase homologues AMD09_RS23160 SM00028 Tetratricopeptide repeats